BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1040
(614 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P18173|DHGL_DROME Glucose dehydrogenase [acceptor] OS=Drosophila melanogaster GN=Gld
PE=3 SV=3
Length = 625
Score = 465 bits (1197), Expect = e-130, Method: Compositional matrix adjust.
Identities = 249/593 (41%), Positives = 351/593 (59%), Gaps = 11/593 (1%)
Query: 28 IARSCGSSLNVTLFMTLVDVMLRTQCDLADPCGRASSNLVRNRPLQEEYDFVVVGGGVAG 87
+A +CG S LFM L++V +R+QCDL DPCGRASS R+ P EYDF+V+GGG AG
Sbjct: 20 LASTCGGSA-FMLFMGLLEVFIRSQCDLEDPCGRASSRF-RSEP-DYEYDFIVIGGGSAG 76
Query: 88 PVVAGRLVENPNWKVLLLEAGPDEPTVTSVPGFAASAVGTHLDWKYKTERNKYACLST-G 146
VVA RL E P WKVLL+EAG DEP +P + +G+ +D++Y TE ACLS+
Sbjct: 77 SVVASRLSEVPQWKVLLIEAGGDEPVGAQIPSMFLNFIGSDIDYRYNTEPEPMACLSSME 136
Query: 147 GICEWPRGKMLAGTGAMTGMMYTRSHPSIYDEWQRQGNPGWGFSDVLRYFIKSEHNLNRD 206
C WPRGK+L GT + GMMY R + YD+W GNPGW ++DVL +F KSE NL+ D
Sbjct: 137 QRCYWPRGKVLGGTSVLNGMMYVRGNREDYDDWAADGNPGWAYNDVLPFFKKSEDNLDLD 196
Query: 207 QVDPEYHGYDGPLKVQRFSSYPPIGEDIIKAGKELGYASGDFNGANQIGVNFAQVMVDNG 266
+V EYH G L V +F PP+ I+KAG+ELG++ D NG N G AQ+ NG
Sbjct: 197 EVGTEYHAKGGLLPVGKFPYNPPLSYAILKAGEELGFSVHDLNGQNSTGFMIAQMTARNG 256
Query: 267 VRSSTPRMFLRDKYKQDNLKVQLNAHVMKLNIDPKTKRALSVQFKDTNTNEIKTVKAKKE 326
+R S+ R FLR ++NL + LN K+ I P TK L V+ D + + KKE
Sbjct: 257 IRYSSARAFLRPARMRNNLHILLNTTATKILIHPHTKNVLGVEVSD-QFGSTRKILVKKE 315
Query: 327 IILTAGAIGSPQLLMLSGVGPKSHLDELGIETISDL-RVGYNLVHHVGANLKFSILDNGV 385
++L+AGA+ SP +L+LSGVGPK L ++ + T+ +L VG NL +HV F I D
Sbjct: 316 VVLSAGAVNSPHILLLSGVGPKDELQQVNVRTVHNLPGVGKNLHNHVTYFTNFFIDDADT 375
Query: 386 SDNNGEIDEKGTYLEE---SNEGLSSMKGNMDEMLNDG--RPGRSILSNTFNALFSNNNK 440
+ N + + S G+S + + D RP + + A + +
Sbjct: 376 APLNWATAMEYLLFRDGLMSGTGISDVTAKLATRYADSPERPDLQLYFGGYLASCARTGQ 435
Query: 441 EEDKMPCGRRSIYARPTNLLPISRGRLVLRSADPFEYPKIHSNYLVMKQDIDVIIEGIRI 500
+ + RSI P L P SRG + LRSADP E P+I +NYL +QD+ ++EGI+
Sbjct: 436 VGELLSNNSRSIQIFPAVLNPRSRGFIGLRSADPLEPPRIVANYLTHEQDVKTLVEGIKF 495
Query: 501 IQKLTRTKALQKWDFQIDSTKMPECKHFEWDSNEYWECYIKTYTLPENHPGGTCKMGPAD 560
+ +L++T L+++ ++D T + C+ + S+ YWEC ++ T PENH G+CKMGP+
Sbjct: 496 VIRLSQTTPLKQYGMRLDKTVVKGCEAHAFGSDAYWECAVRQNTGPENHQAGSCKMGPSH 555
Query: 561 DYSSVVDAQLRIHGVPNLRVMDASIFPTNINSNPIATIIMIAEKGADMVKESW 613
D +VV+ +LR+HG+ LRVMD SI P + N A +MIAEKGA ++K +W
Sbjct: 556 DPMAVVNHELRVHGIRGLRVMDTSIMPKVSSGNTHAPAVMIAEKGAYLLKRAW 608
>sp|P18172|DHGL_DROPS Glucose dehydrogenase [acceptor] OS=Drosophila pseudoobscura
pseudoobscura GN=Gld PE=3 SV=4
Length = 625
Score = 457 bits (1176), Expect = e-127, Method: Compositional matrix adjust.
Identities = 247/594 (41%), Positives = 348/594 (58%), Gaps = 13/594 (2%)
Query: 28 IARSCGSSLNVTLFMTLVDVMLRTQCDLADPCGRASSNLVRNRPLQEEYDFVVVGGGVAG 87
+A +CG S LFM L++V +R+QCDL DPCGRAS+ R+ P EYDF+V+GGG AG
Sbjct: 20 LASTCGGSA-FMLFMGLLEVFIRSQCDLEDPCGRASTRF-RSEP-DYEYDFIVIGGGSAG 76
Query: 88 PVVAGRLVENPNWKVLLLEAGPDEPTVTSVPGFAASAVGTHLDWKYKTERNKYACLST-G 146
VVA RL E P WKVLL+EAG DEP +P + +G+ +D++Y TE + ACLS+
Sbjct: 77 SVVASRLSEVPQWKVLLIEAGGDEPVGAQIPSMFLNFIGSDIDYRYNTEPERMACLSSME 136
Query: 147 GICEWPRGKMLAGTGAMTGMMYTRSHPSIYDEWQRQGNPGWGFSDVLRYFIKSEHNLNRD 206
C WPRGK+L GT M GMMY R + YD+W QGNPGW + DVL +F KSE NL D
Sbjct: 137 QRCYWPRGKVLGGTSVMNGMMYIRGNREDYDDWAAQGNPGWSYQDVLPFFKKSEDNLELD 196
Query: 207 QVDPEYHGYDGPLKVQRFSSYPPIGEDIIKAGKELGYASGDFNGANQIGVNFAQVMVDNG 266
V EYH G L V +F PP+ ++KAG+E+G++ D NG N G AQ+ NG
Sbjct: 197 AVGTEYHAKGGLLPVGKFPYNPPLSYALLKAGEEMGFSVQDLNGQNSTGFMIAQMTARNG 256
Query: 267 VRSSTPRMFLRDKYKQDNLKVQLNAHVMKLNIDPKTKRALSVQFKDTNTNEIKTVKAKKE 326
+R S+ R FLR ++NL + LN V K+ I P TK + V+ D ++ + KKE
Sbjct: 257 IRYSSARAFLRPARMRNNLHILLNTTVTKVLIHPGTKNVVGVEVSD-QFGSMRKILVKKE 315
Query: 327 IILTAGAIGSPQLLMLSGVGPKSHLDELGIETISDL-RVGYNLVHHVGANLKFSILDNGV 385
+I++ GA+ SPQ+L+LSGVGPK L ++ + + L VG NL +HV F I D
Sbjct: 316 VIVSGGAVNSPQILLLSGVGPKEDLQKVNVRPVHHLPGVGKNLHNHVAYFTNFFIDDADT 375
Query: 386 SDNNGEIDEKGTYLEE---SNEGLSSMKGNMDEMLNDGRPGRSILSNTFNALFSN---NN 439
+ N + + S G+S + M D RP L F ++
Sbjct: 376 APLNWATAMEYLLFRDGLMSGTGISDVTAKMATRWAD-RPNLPDLQLYFGGYLASCARTG 434
Query: 440 KEEDKMPCGRRSIYARPTNLLPISRGRLVLRSADPFEYPKIHSNYLVMKQDIDVIIEGIR 499
+ + + R+I P L P SRG + LRSADP + P+I +NYL ++D+ ++EGI+
Sbjct: 435 QVGELLSNNSRAIQIFPAVLNPKSRGYITLRSADPLDPPRIFANYLTDERDVKTLVEGIK 494
Query: 500 IIQKLTRTKALQKWDFQIDSTKMPECKHFEWDSNEYWECYIKTYTLPENHPGGTCKMGPA 559
+L++T L+++ ++D T + C+ + S+ YWEC ++ T PENH G+CKMGP+
Sbjct: 495 FAIRLSQTSPLKQYGMRLDKTVVKGCESHAFASDAYWECAVRQNTGPENHQAGSCKMGPS 554
Query: 560 DDYSSVVDAQLRIHGVPNLRVMDASIFPTNINSNPIATIIMIAEKGADMVKESW 613
D +VV+ +LR+HGV LRVMD SI P N A +MIAEKGA ++K +W
Sbjct: 555 HDPMAVVNHELRVHGVRGLRVMDTSIMPKVTAGNTHAPAVMIAEKGAYLLKRAW 608
>sp|Q47944|SDH_GLUOY L-sorbose 1-dehydrogenase OS=Gluconobacter oxydans PE=3 SV=1
Length = 531
Score = 255 bits (652), Expect = 6e-67, Method: Compositional matrix adjust.
Identities = 184/544 (33%), Positives = 276/544 (50%), Gaps = 29/544 (5%)
Query: 76 YDFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGPDE--PTVTSVPGFAASAVGTHLDWKY 133
+D++VVGGG AG V+A RL ENP+ +V L+EAG + P + GFA G H W
Sbjct: 5 FDYIVVGGGSAGCVLAARLSENPSVRVCLIEAGRRDTHPLIHMPVGFAKMTTGPH-TWDL 63
Query: 134 KTERNKYACLSTGGICEWPRGKMLAGTGAMTGMMYTRSHPSIYDEWQRQGNPGWGFSDVL 193
TE K+A + +G++L G ++ ++TR HPS +D W +G GW F DV
Sbjct: 64 LTEPQKHA---NNRQIPYVQGRILGGGSSINAEVFTRGHPSDFDRWAAEGADGWSFRDVQ 120
Query: 194 RYFIKSEHNLNRDQVDPEYHGYDGPLKVQRFSSYPPIGEDIIKAGKELGYA-SGDFNGAN 252
+YFI+SE N +HG +GPL V + P +++ +E+G + DFNGA+
Sbjct: 121 KYFIRSEGNA---VFSGTWHGTNGPLGVSNLAEPNPTSRAFVQSCQEMGLPYNPDFNGAS 177
Query: 253 QIGVNFAQVMVDNGVRSSTPRMFLRDKYKQDNLKVQLNAHVMKLNIDPKTKRALSVQFKD 312
Q G Q+ + N R ST +LR + NL V A V+K+ + RA VQ+
Sbjct: 178 QEGAGIYQMTIRNNRRCSTAVGYLRPALGRKNLTVVTRALVLKIVFN--GTRATGVQYIA 235
Query: 313 TNTNEIKTVKAKKEIILTAGAIGSPQLLMLSGVGPKSHLDELGIETISDL-RVGYNLVHH 371
T + T +A +EI++TAGAIG+P+L+MLSGVGP +HL E GI + DL VG NL H
Sbjct: 236 NGT--LNTAEASQEIVVTAGAIGTPKLMMLSGVGPAAHLRENGIPVVQDLPGVGENLQDH 293
Query: 372 VGANLKFSILDNGVSDNNGEIDEK-GTYLEESNEGLSSMKGNMDE----MLNDGRPGRSI 426
G ++ + + D ++ LE + + N+ E +D G
Sbjct: 294 FGVDIVAELKTDESFDKYRKLHWMLWAGLEYTMFRSGPVASNVVEGGAFWYSDPSSGVPD 353
Query: 427 LSNTFNALFSNNNKEEDKMPCGRRSIYARPTNLLPISRGRLVLRSADPFEYPKIHSNYLV 486
L F A + +P G I L P SRG + LRSADP P + N+L
Sbjct: 354 LQFHFLAE-AGAEAGVTSVPKGASGITLNSYVLRPKSRGTVRLRSADPRVNPMVDPNFLG 412
Query: 487 MKQDIDVIIEGIRIIQKLTRTKALQKWDFQIDSTKMPECKHFEWDSNEYWECYIKTYTLP 546
D++ EG+R+ ++ +L+K I T K + + + Y + +
Sbjct: 413 DPADLETSAEGVRLSYEMFSQPSLEK---HIRKTCFFSGKQ---PTMQMYRDYAREHGRT 466
Query: 547 ENHPGGTCKMGPADDYSSVVDAQLRIHGVPNLRVMDASIFPTNINSNPIATIIMIAEKGA 606
HP TCKMG D SVVD +L++HG+ +R+ D+S+ P+ + SN A IMI+E+ A
Sbjct: 467 SYHPTCTCKMG--RDDMSVVDPRLKVHGLEGIRICDSSVMPSLLGSNTNAATIMISERAA 524
Query: 607 DMVK 610
D ++
Sbjct: 525 DFIQ 528
>sp|Q9WWW2|ALKJ_PSEPU Alcohol dehydrogenase [acceptor] OS=Pseudomonas putida GN=alkJ PE=3
SV=1
Length = 552
Score = 254 bits (648), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 181/550 (32%), Positives = 273/550 (49%), Gaps = 40/550 (7%)
Query: 76 YDFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGPDE--PTVTSVPGFAASAVGTHLDWKY 133
YD+++VG G AG V+A RL +P+ +V LLEAGP + P + G A + L+W +
Sbjct: 2 YDYIIVGAGSAGCVLANRLSADPSKRVCLLEAGPRDTNPLIHMPLGIALLSNSKKLNWAF 61
Query: 134 KTERNKYACLSTGGICEWPRGKMLAGTGAMTGMMYTRSHPSIYDEWQRQGNPGWGFSDVL 193
+T ++ + WPRGK L G+ ++ M+Y R H Y W++ G WG+
Sbjct: 62 QTAPQQHLNERS---LFWPRGKTLGGSSSINAMVYIRGHEEDYQAWEQAGGEYWGWKRAF 118
Query: 194 RYFIKSEHNLNRDQVDPEYHGYDGPLKVQRFSSYPPIGEDIIKAGKELGYA-SGDFNGAN 252
F K EHN D+ + YHG DG L V P+ + ++AG E + +GDFNGA+
Sbjct: 119 ALFKKLEHNQRFDKSN--YHGTDGELAVSDLKDLNPLSKSFVQAGMEAKISFNGDFNGAH 176
Query: 253 QIGVNFAQVMVDNGVRSSTPRMFLRDKYKQDNLKVQLNAHVMKLNIDPKTKRALSVQFKD 312
Q GV F QV +G R S+ R FL D + NL + AH K+ + ++A+ V +
Sbjct: 177 QEGVGFYQVTQKHGQRWSSARAFLHDVIDRPNLDIITEAHATKVLFE--DRKAVGVSYIQ 234
Query: 313 TNTNEIKTVKAKKEIILTAGAIGSPQLLMLSGVGPKSHLDELGIETISDL-RVGYNLVHH 371
N ++ E+IL+ GA+ +PQLLMLSGVG + L E GI + DL VG NL H
Sbjct: 235 KNMHQQVKTTDSGEVILSLGAVNTPQLLMLSGVGAAAELKEHGIALVHDLPEVGKNLQDH 294
Query: 372 VGANL------------KFSILDNGVSDNNGEIDEKGTYLEESNEGLSSMKGNMDEMLND 419
+ L FS + G+ I ++ +L + ++ G +
Sbjct: 295 LDITLMCAANSRTPIGVAFSFIPRGLVGLFSYIFKRKGFLTSN---VAESGGFVKSSPER 351
Query: 420 GRPGRSILSNTFNALFSNNNKEEDKMPCGRRSIYARPTNLLPISRGRLVLRSADPFEYPK 479
RP F+ L + K+ G +LLP SRGR+ L+SA+P + P
Sbjct: 352 DRPNLQ-----FHFLPTYLKDHGRKIAVG-YGYTLHICDLLPKSRGRIGLKSANPMDDPL 405
Query: 480 IHSNYLVMKQDIDVIIEGIRIIQKLTRTKALQKWDFQIDSTKMPECKHFEWDSNEYWECY 539
I NYL +DI +I GI+I + + ++ K F+ + P S++
Sbjct: 406 IDPNYLSDPEDIKTMIAGIKIGRAIFDAPSMAK-HFKREIVPGPAVT-----SDDEIVAD 459
Query: 540 IKTYTLPENHPGGTCKMGPADDYSSVVDAQLRIHGVPNLRVMDASIFPTNINSNPIATII 599
I++ HP GTC+MG D +SVVD L++ G+ N+RV+DASI P + N A I
Sbjct: 460 IRSRAETIYHPVGTCRMG--KDPASVVDPCLQVRGLRNIRVVDASIMPNLVAGNTNAPTI 517
Query: 600 MIAEKGADMV 609
MIAE A+++
Sbjct: 518 MIAENAAEII 527
>sp|P64264|Y1310_MYCBO Uncharacterized GMC-type oxidoreductase Mb1310 OS=Mycobacterium
bovis (strain ATCC BAA-935 / AF2122/97) GN=Mb1310 PE=3
SV=1
Length = 528
Score = 246 bits (627), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 177/552 (32%), Positives = 274/552 (49%), Gaps = 38/552 (6%)
Query: 72 LQEEYDFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGP-DEPTVTSVPGFAASAVGTHLD 130
+ + D+VVVG G AG VVA RL +P V+ LEAGP D+ VP + + +D
Sbjct: 1 MDTQSDYVVVGTGSAGAVVASRLSTDPATTVVALEAGPRDKNRFIGVPAAFSKLFRSEID 60
Query: 131 WKYKTERNKYACLSTGGICEWPRGKMLAGTGAMTGMMYTRSHPSIYDEWQRQGNPGWGFS 190
W Y TE G WPRGK+L G+ +M MM+ R S YDEW + P W ++
Sbjct: 61 WDYLTEPQPEL---DGREIYWPRGKVLGGSSSMNAMMWVRGFASDYDEWAARAGPRWSYA 117
Query: 191 DVLRYFIKSEH-NLNRDQVDPEYHGYDGPLKVQRFSSYPPIGEDIIKAGKELGYASGDFN 249
DVL YF + E+ V + G GPL + R S + + A +E G+A+ N
Sbjct: 118 DVLGYFRRIENVTAAWHFVSGDDSGVTGPLHISRQRSPRSVTAAWLAAARECGFAAARPN 177
Query: 250 GANQIGVNFAQVMVDNGVRSSTPRMFLRDKYKQDNLKVQLNAHVMKLNIDPKTKRALSVQ 309
G V G R ST +L+ ++ NL+V A ++ ID RA+ V+
Sbjct: 178 SPRPEGFCETVVTQRRGARFSTADAYLKPAMRRKNLRVLTGATATRVVID--GDRAVGVE 235
Query: 310 FKDTNTNEIKTVKAKKEIILTAGAIGSPQLLMLSGVGPKSHLDELGIETISDL-RVGYNL 368
++ + + + V A++E++L AGA+ SPQLLMLSG+G + HL E I+T+ VG NL
Sbjct: 236 YQ--SDGQTRIVYARREVVLCAGAVNSPQLLMLSGIGDRDHLAEHDIDTVYHAPEVGCNL 293
Query: 369 VHHVGANLKFSILDNGV--SDNNGEIDEKGTYLEESNEGLSSMKGNMDEMLNDGRPGRSI 426
+ H+ L F + + + ++ G++ +YL L+S N+ E R +
Sbjct: 294 LDHLVTVLGFDVEKDSLFAAEKPGQLI---SYLLRRRGMLTS---NVGEAYGFVRSRPEL 347
Query: 427 LSNTFNALFSNNNKEEDKM--PCGRRSIYARPTNLLPISRGRLVLRSADPFEYPKIHSNY 484
+F+ ++ + P G ++ P + P SRG++ LRSADP P I Y
Sbjct: 348 KLPDLELIFAPAPFYDEALVPPAGHGVVFG-PILVAPQSRGQITLRSADPHAKPVIEPRY 406
Query: 485 LVMKQDID--VIIEGIRIIQKLTRTKALQKWDFQI----DSTKMPECKHFEWDSNEYWEC 538
L +D ++ G+RI ++ + + L+ I +ST++ E E
Sbjct: 407 LSDLGGVDRAAMMAGLRICARIAQARPLRDLLGSIARPRNSTELDEAT---------LEL 457
Query: 539 YIKTYTLPENHPGGTCKMGPADDYSSVVDAQLRIHGVPNLRVMDASIFPTNINSNPIATI 598
+ T + HP GTC+MG D +SVVD QLR+ GV LRV DAS+ P+ + + A
Sbjct: 458 ALATCSHTLYHPMGTCRMG--SDEASVVDPQLRVRGVDGLRVADASVMPSTVRGHTHAPS 515
Query: 599 IMIAEKGADMVK 610
++I EK AD+++
Sbjct: 516 VLIGEKAADLIR 527
>sp|P64263|Y1279_MYCTU Uncharacterized GMC-type oxidoreductase Rv1279/MT1316
OS=Mycobacterium tuberculosis GN=Rv1279 PE=3 SV=1
Length = 528
Score = 246 bits (627), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 177/552 (32%), Positives = 274/552 (49%), Gaps = 38/552 (6%)
Query: 72 LQEEYDFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGP-DEPTVTSVPGFAASAVGTHLD 130
+ + D+VVVG G AG VVA RL +P V+ LEAGP D+ VP + + +D
Sbjct: 1 MDTQSDYVVVGTGSAGAVVASRLSTDPATTVVALEAGPRDKNRFIGVPAAFSKLFRSEID 60
Query: 131 WKYKTERNKYACLSTGGICEWPRGKMLAGTGAMTGMMYTRSHPSIYDEWQRQGNPGWGFS 190
W Y TE G WPRGK+L G+ +M MM+ R S YDEW + P W ++
Sbjct: 61 WDYLTEPQPEL---DGREIYWPRGKVLGGSSSMNAMMWVRGFASDYDEWAARAGPRWSYA 117
Query: 191 DVLRYFIKSEH-NLNRDQVDPEYHGYDGPLKVQRFSSYPPIGEDIIKAGKELGYASGDFN 249
DVL YF + E+ V + G GPL + R S + + A +E G+A+ N
Sbjct: 118 DVLGYFRRIENVTAAWHFVSGDDSGVTGPLHISRQRSPRSVTAAWLAAARECGFAAARPN 177
Query: 250 GANQIGVNFAQVMVDNGVRSSTPRMFLRDKYKQDNLKVQLNAHVMKLNIDPKTKRALSVQ 309
G V G R ST +L+ ++ NL+V A ++ ID RA+ V+
Sbjct: 178 SPRPEGFCETVVTQRRGARFSTADAYLKPAMRRKNLRVLTGATATRVVID--GDRAVGVE 235
Query: 310 FKDTNTNEIKTVKAKKEIILTAGAIGSPQLLMLSGVGPKSHLDELGIETISDL-RVGYNL 368
++ + + + V A++E++L AGA+ SPQLLMLSG+G + HL E I+T+ VG NL
Sbjct: 236 YQ--SDGQTRIVYARREVVLCAGAVNSPQLLMLSGIGDRDHLAEHDIDTVYHAPEVGCNL 293
Query: 369 VHHVGANLKFSILDNGV--SDNNGEIDEKGTYLEESNEGLSSMKGNMDEMLNDGRPGRSI 426
+ H+ L F + + + ++ G++ +YL L+S N+ E R +
Sbjct: 294 LDHLVTVLGFDVEKDSLFAAEKPGQLI---SYLLRRRGMLTS---NVGEAYGFVRSRPEL 347
Query: 427 LSNTFNALFSNNNKEEDKM--PCGRRSIYARPTNLLPISRGRLVLRSADPFEYPKIHSNY 484
+F+ ++ + P G ++ P + P SRG++ LRSADP P I Y
Sbjct: 348 KLPDLELIFAPAPFYDEALVPPAGHGVVFG-PILVAPQSRGQITLRSADPHAKPVIEPRY 406
Query: 485 LVMKQDID--VIIEGIRIIQKLTRTKALQKWDFQI----DSTKMPECKHFEWDSNEYWEC 538
L +D ++ G+RI ++ + + L+ I +ST++ E E
Sbjct: 407 LSDLGGVDRAAMMAGLRICARIAQARPLRDLLGSIARPRNSTELDEAT---------LEL 457
Query: 539 YIKTYTLPENHPGGTCKMGPADDYSSVVDAQLRIHGVPNLRVMDASIFPTNINSNPIATI 598
+ T + HP GTC+MG D +SVVD QLR+ GV LRV DAS+ P+ + + A
Sbjct: 458 ALATCSHTLYHPMGTCRMG--SDEASVVDPQLRVRGVDGLRVADASVMPSTVRGHTHAPS 515
Query: 599 IMIAEKGADMVK 610
++I EK AD+++
Sbjct: 516 VLIGEKAADLIR 527
>sp|Q6UPE0|CHDH_RAT Choline dehydrogenase, mitochondrial OS=Rattus norvegicus GN=Chdh
PE=1 SV=1
Length = 599
Score = 245 bits (626), Expect = 7e-64, Method: Compositional matrix adjust.
Identities = 178/555 (32%), Positives = 276/555 (49%), Gaps = 37/555 (6%)
Query: 73 QEEYDFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGPDEPTVTS--------VPG-FAAS 123
++EY F+VVG G AG V+A RL E+PN +VLLLEAGP + + S +P A+
Sbjct: 43 KDEYTFIVVGAGSAGCVLANRLTEDPNHRVLLLEAGPKDLLMGSKRLQWKIHMPAALVAN 102
Query: 124 AVGTHLDWKYKTERNKYACLSTGGICEWPRGKMLAGTGAMTGMMYTRSHPSIYDEWQRQG 183
+W Y TE G + WPRG++ G+ ++ M+Y R H Y+ W RQG
Sbjct: 103 LCDDKYNWYYHTEAQPGL---DGRVLYWPRGRVWGGSSSLNAMVYIRGHAEDYNRWHRQG 159
Query: 184 NPGWGFSDVLRYFIKSE-HNLNRDQVDPEYHGYDGPLKVQRFSSYPPIGEDIIKAGKELG 242
GW ++ L YF K++ H L + Y G DGPL V R + P+ + ++A ++ G
Sbjct: 160 AEGWDYAHCLPYFRKAQKHELGANM----YRGGDGPLHVSRGKTNHPLHQAFLQAARQAG 215
Query: 243 YA-SGDFNGANQIGVNFAQVMVDNGVRSSTPRMFLRDKYKQDNLKVQLNAHVMKLNIDPK 301
Y + D NG Q G + + + G R ST +LR + NL+ ++ V ++ +
Sbjct: 216 YPFTEDMNGFQQEGFGWMDMTIHQGKRWSTASAYLRPALSRPNLRAEVQTLVSRVLFE-- 273
Query: 302 TKRALSVQF-KDTNTNEIKTVKAKKEIILTAGAIGSPQLLMLSGVGPKSHLDELGIETIS 360
RA+ V++ KD +++ +E+IL+ GAI SPQLLMLSGVG L +LGI +
Sbjct: 274 GTRAVGVEYIKDGQSHK---AYVSREVILSGGAINSPQLLMLSGVGNADDLKKLGIPVVC 330
Query: 361 DLR-VGYNLVHHVGANLKFSILDNGVSDNNGEIDEKGTYLEESNEGLSSMKGNMDEMLND 419
L VG NL H+ ++ + ++ ++ + + + + G +
Sbjct: 331 HLPGVGQNLQDHLEIYIQHACTQP-ITLHSAQKPLRKVCIGLEWLWRFTGDGATAHLETG 389
Query: 420 G----RPGRSILSNTFNALFSNNNKEEDKMPCGRRSIYARPTNLLPISRGRLVLRSADPF 475
G RPG F+ L S + + P + + + S G L LRS +P
Sbjct: 390 GFIRSRPGVPHPDIQFHFLPS-QVIDHGRKPTQQEAYQVHVGTMRATSVGWLKLRSTNPQ 448
Query: 476 EYPKIHSNYLVMKQDIDVIIEGIRIIQKLTRTKALQKWDFQIDSTKMPECKHFEWDSNEY 535
++P I+ NYL + D +E R KLTR Q+ ++ H + S++
Sbjct: 449 DHPMINPNYLSTETD----VEDFRQCVKLTREIFAQEAFAPFRGKELQPGSHVQ--SDKE 502
Query: 536 WECYIKTYTLPENHPGGTCKMGPADDYSSVVDAQLRIHGVPNLRVMDASIFPTNINSNPI 595
+ +++ HP TCKMG D ++VVD Q R+ GV NLRV+DASI P+ ++ N
Sbjct: 503 IDAFVRAKADSAYHPSCTCKMGQPSDPTAVVDQQTRVIGVENLRVIDASIMPSVVSGNLN 562
Query: 596 ATIIMIAEKGADMVK 610
A IMIAEK AD++K
Sbjct: 563 APTIMIAEKAADVIK 577
>sp|Q8NE62|CHDH_HUMAN Choline dehydrogenase, mitochondrial OS=Homo sapiens GN=CHDH PE=2
SV=2
Length = 594
Score = 244 bits (623), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 182/559 (32%), Positives = 269/559 (48%), Gaps = 45/559 (8%)
Query: 73 QEEYDFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGPDEPTVTS--------VPG-FAAS 123
++EY +VVVG G AG V+AGRL E+P +VLLLEAGP + S +P A+
Sbjct: 38 RDEYSYVVVGAGSAGCVLAGRLTEDPAERVLLLEAGPKDVLAGSKRLSWKIHMPAALVAN 97
Query: 124 AVGTHLDWKYKTERNKYACLSTGGICEWPRGKMLAGTGAMTGMMYTRSHPSIYDEWQRQG 183
+W Y TE + G + WPRG++ G+ ++ M+Y R H Y+ WQRQG
Sbjct: 98 LCDDRYNWCYHTEVQRGL---DGRVLYWPRGRVWGGSSSLNAMVYVRGHAEDYERWQRQG 154
Query: 184 NPGWGFSDVLRYFIKSE-HNLNRDQVDPEYHGYDGPLKVQRFSSYPPIGEDIIKAGKELG 242
GW ++ L YF K++ H L + Y G DGPL+V R + P+ ++A ++ G
Sbjct: 155 ARGWDYAHCLPYFRKAQGHELGASR----YRGADGPLRVSRGKTNHPLHCAFLEATQQAG 210
Query: 243 YA-SGDFNGANQIGVNFAQVMVDNGVRSSTPRMFLRDKYKQDNLKVQLNAHVMKLNIDPK 301
Y + D NG Q G + + + G R S +L + NLK + V ++ +
Sbjct: 211 YPLTEDMNGFQQEGFGWMDMTIHEGKRWSAACAYLHPALSRTNLKAEAETLVSRVLFE-- 268
Query: 302 TKRALSVQFKDTNTNEIKTVKAKKEIILTAGAIGSPQLLMLSGVGPKSHLDELGIETISD 361
RA+ V++ + A KE+IL+ GAI SPQLLMLSG+G L +LGI +
Sbjct: 269 GTRAVGVEY--VKNGQSHRAYASKEVILSGGAINSPQLLMLSGIGNADDLKKLGIPVVCH 326
Query: 362 L-RVGYNLVHHVGANLKFSILDNGVSDNNGEIDEKGTYLEESNEGLSSM-----KGNMDE 415
L VG NL H I + L + GL + +G
Sbjct: 327 LPGVGQNLQDH------LEIYIQQACTRPITLHSAQKPLRKVCIGLEWLWKFTGEGATAH 380
Query: 416 MLNDG----RPGRSILSNTFNALFSNNNKEEDKMPCGRRSIYARPTNLLPISRGRLVLRS 471
+ G +PG F+ L S + ++P + + + S G L LRS
Sbjct: 381 LETGGFIRSQPGVPHPDIQFHFLPS-QVIDHGRVPTQQEAYQVHVGPMRGTSVGWLKLRS 439
Query: 472 ADPFEYPKIHSNYLVMKQDIDVIIEGIRIIQKLTRTKALQKWDFQIDSTKMPECKHFEWD 531
A+P ++P I NYL + D IE R+ KLTR Q+ ++ H +
Sbjct: 440 ANPQDHPVIQPNYLSTETD----IEDFRLCVKLTREIFAQEALAPFRGKELQPGSHIQ-- 493
Query: 532 SNEYWECYIKTYTLPENHPGGTCKMGPADDYSSVVDAQLRIHGVPNLRVMDASIFPTNIN 591
S++ + +++ HP TCKMG D ++VVD Q R+ GV NLRV+DASI P+ ++
Sbjct: 494 SDKEIDAFVRAKADSAYHPSCTCKMGQPSDPTAVVDPQTRVLGVENLRVVDASIMPSMVS 553
Query: 592 SNPIATIIMIAEKGADMVK 610
N A IMIAEK AD++K
Sbjct: 554 GNLNAPTIMIAEKAADIIK 572
>sp|Q00593|ALKJ_PSEOL Alcohol dehydrogenase [acceptor] OS=Pseudomonas oleovorans GN=alkJ
PE=1 SV=1
Length = 558
Score = 244 bits (622), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 178/550 (32%), Positives = 267/550 (48%), Gaps = 40/550 (7%)
Query: 76 YDFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGPDE--PTVTSVPGFAASAVGTHLDWKY 133
YD+++VG G AG V+A RL +P+ +V LLEAGP + P + G A + L+W +
Sbjct: 2 YDYIIVGAGSAGCVLANRLSADPSKRVCLLEAGPRDTNPLIHMPLGIALLSNSKKLNWAF 61
Query: 134 KTERNKYACLSTGGICEWPRGKMLAGTGAMTGMMYTRSHPSIYDEWQRQGNPGWGFSDVL 193
+T + G WPRGK L G+ ++ M+Y R H Y W++ WG+ L
Sbjct: 62 QTAPQQNL---NGRSLFWPRGKTLGGSSSINAMVYIRGHEDDYHAWEQAAGRYWGWYRAL 118
Query: 194 RYFIKSEHNLNRDQVDPEYHGYDGPLKVQRFSSYPPIGEDIIKAGKELGY-ASGDFNGAN 252
F + E N D+ E+HG DG L V P+ + ++AG E +GDFNG
Sbjct: 119 ELFKRLECNQRFDK--SEHHGVDGELAVSDLKYINPLSKAFVQAGMEANINFNGDFNGEY 176
Query: 253 QIGVNFAQVMVDNGVRSSTPRMFLRDKYKQDNLKVQLNAHVMKLNIDPKTKRALSVQFKD 312
Q GV F QV NG R S+ R FL + NL + +AH K+ + ++A+ V +
Sbjct: 177 QDGVGFYQVTQKNGQRWSSARAFLHGVLSRPNLDIITDAHASKILFE--DRKAVGVSYIK 234
Query: 313 TNTNEIKTVKAKKEIILTAGAIGSPQLLMLSGVGPKSHLDELGIETISDL-RVGYNLVHH 371
N + + E++L+ GA+G+P LLMLSGVG + L E G+ + DL VG NL H
Sbjct: 235 KNMHHQVKTTSGGEVLLSLGAVGTPHLLMLSGVGAAAELKEHGVSLVHDLPEVGKNLQDH 294
Query: 372 VGANL------------KFSILDNGVSDNNGEIDEKGTYLEESNEGLSSMKGNMDEMLND 419
+ L S + GVS + ++ +L + ++ G + +
Sbjct: 295 LDITLMCAANSREPIGVALSFIPRGVSGLFSYVFKREGFLTSN---VAESGGFVKSSPDR 351
Query: 420 GRPGRSILSNTFNALFSNNNKEEDKMPCGRRSIYARPTNLLPISRGRLVLRSADPFEYPK 479
RP N K+ + G +LLP SRGR+ L+SA+P + P
Sbjct: 352 DRP------NLQFHFLPTYLKDHGRKIAGGYGYTLHICDLLPKSRGRIGLKSANPLQPPL 405
Query: 480 IHSNYLVMKQDIDVIIEGIRIIQKLTRTKALQKWDFQIDSTKMPECKHFEWDSNEYWECY 539
I NYL +DI +I GI+I + + + ++ K F+ + K +E E
Sbjct: 406 IDPNYLSDHEDIKTMIAGIKIGRAILQAPSMAK-HFKHEVVPGQAVK----TDDEIIED- 459
Query: 540 IKTYTLPENHPGGTCKMGPADDYSSVVDAQLRIHGVPNLRVMDASIFPTNINSNPIATII 599
I+ HP GTC+MG D +SVVD L+I G+ N+RV+DASI P + N A I
Sbjct: 460 IRRRAETIYHPVGTCRMG--KDPASVVDPCLKIRGLANIRVVDASIMPHLVAGNTNAPTI 517
Query: 600 MIAEKGADMV 609
MIAE A+++
Sbjct: 518 MIAENAAEII 527
>sp|Q8BJ64|CHDH_MOUSE Choline dehydrogenase, mitochondrial OS=Mus musculus GN=Chdh PE=1
SV=1
Length = 596
Score = 243 bits (619), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 180/572 (31%), Positives = 287/572 (50%), Gaps = 46/572 (8%)
Query: 58 PCGRASSNLVRNRPLQEEYDFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGPDEPTVTS- 116
PC RA +++ ++ EY FVVVG G AG V+A RL E+PN +VLLLEAGP + + S
Sbjct: 30 PCSRAVASVGKD-----EYTFVVVGAGSAGCVLASRLTEDPNHRVLLLEAGPKDLLMGSK 84
Query: 117 -------VPG-FAASAVGTHLDWKYKTERNKYACLSTGGICEWPRGKMLAGTGAMTGMMY 168
+P ++ +W Y TE + WPRG++ G+ ++ M+Y
Sbjct: 85 RLQWKIHMPAALVSNLCDDKYNWYYHTEPQPGM---DSRVLYWPRGRVWGGSSSLNAMVY 141
Query: 169 TRSHPSIYDEWQRQGNPGWGFSDVLRYFIKSE-HNLNRDQVDPEYHGYDGPLKVQRFSSY 227
R H Y+ W R+G GW ++ L YF K++ H L + Y G DGPL V R +
Sbjct: 142 IRGHAEDYNRWHREGAEGWDYAHCLPYFRKAQRHELGANM----YRGGDGPLHVSRGKTN 197
Query: 228 PPIGEDIIKAGKELGYA-SGDFNGANQIGVNFAQVMVDNGVRSSTPRMFLRDKYKQDNLK 286
P+ + ++A ++ GY + D NG Q G + + V G R ST +L + NL+
Sbjct: 198 HPLHQAFLQAARQAGYPFTEDMNGFQQEGFGWMDMTVHQGKRWSTACAYLHPVLSRPNLR 257
Query: 287 VQLNAHVMKLNIDPKTKRALSVQF-KDTNTNEIKTVKAKKEIILTAGAIGSPQLLMLSGV 345
++ V ++ + RA+ V++ KD ++ +E+IL+ GAI SPQLLMLSGV
Sbjct: 258 AEVQTLVSRVLFE--GTRAVGVEYIKDGQRHK---AYVSREVILSGGAINSPQLLMLSGV 312
Query: 346 GPKSHLDELGIETISDLR-VGYNLVHHVGANLKFSILDNGVSDNNGEIDEKGTYLEESNE 404
G L +L I + L VG NL H+ ++ ++ ++ + + + E
Sbjct: 313 GNADDLRKLDIPVVCHLPGVGQNLQDHLEVYVQ-QACTQPITLHSAQKPLRKVCI--GLE 369
Query: 405 GLSSMKGN-MDEMLNDG-----RPGRSILSNTFNALFSNNNKEEDKMPCGRRSIYARPTN 458
L S G+ L G RPG F+ L S + + P + +
Sbjct: 370 WLWSYTGDGATAHLETGGFIRSRPGVPHPDIQFHFLPS-QVIDHGRKPTQQEAYQVHVGT 428
Query: 459 LLPISRGRLVLRSADPFEYPKIHSNYLVMKQDIDVIIEGIRIIQKLTRTKALQKWDFQID 518
+ S G L LRSA+P ++P IH NYL + D++ + +R+ +++ +AL
Sbjct: 429 MRATSVGWLKLRSANPRDHPVIHPNYLSTETDVEDFRQCVRLSREIFAQEALAP----FR 484
Query: 519 STKMPECKHFEWDSNEYWECYIKTYTLPENHPGGTCKMGPADDYSSVVDAQLRIHGVPNL 578
++ H + S++ + +++ HP TCKMG + D ++VVDAQ ++ GV NL
Sbjct: 485 GKELQPGSHVQ--SDKEIDAFVRAKADSAYHPSCTCKMGRSSDPTAVVDAQTKVIGVENL 542
Query: 579 RVMDASIFPTNINSNPIATIIMIAEKGADMVK 610
RV+DASI P+ ++ N A +MIAEK AD++K
Sbjct: 543 RVVDASIMPSVVSGNLNAPTVMIAEKAADIIK 574
>sp|Q7MF12|BETA_VIBVY Choline dehydrogenase OS=Vibrio vulnificus (strain YJ016) GN=betA
PE=3 SV=1
Length = 560
Score = 241 bits (616), Expect = 9e-63, Method: Compositional matrix adjust.
Identities = 179/549 (32%), Positives = 281/549 (51%), Gaps = 30/549 (5%)
Query: 72 LQEEYDFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGPDEPTVTSVPGFAASAVGTHLDW 131
+Q+ YD+++VG G AG V+A RL E+ + VLLLEAG + ++ A S +
Sbjct: 1 MQQHYDYIIVGAGSAGCVLADRLSESGDHSVLLLEAGGSDKSIFIQMPTALSYPMNSEKY 60
Query: 132 KYKTERNKYACLSTGGICEWPRGKMLAGTGAMTGMMYTRSHPSIYDEWQRQGNPGWGFSD 191
++ E + A L G PRGK+L G+ ++ GM+Y R H +DEW+ QG GW +
Sbjct: 61 AWQFETDAEADLD-GRRLHCPRGKVLGGSSSINGMVYVRGHACDFDEWEEQGAKGWNYQA 119
Query: 192 VLRYFIKSEHNLNRDQVDPEYHGYDGPLKVQRFS--SYPPIGEDIIKAGKELGY-ASGDF 248
L YF ++E+ ++ + EY G DGPL + + P+ I AGKE GY + D+
Sbjct: 120 CLPYFRRAENWIDGED---EYRGGDGPLSTCAGNKMTLNPLYRAFIDAGKEAGYPETSDY 176
Query: 249 NGANQIGVNFAQVMVDNGVRSSTPRMFLRDKYKQDNLKVQLNAHVMKLNIDPKTKRALSV 308
NG Q G + V NGVR+ST +L K+ N K+ V ++ ++ KRA+ V
Sbjct: 177 NGYQQEGFGPMHMTVKNGVRASTSNAYLSRAKKRSNFKLIKGVVVQRILLE--EKRAVGV 234
Query: 309 QFKDTNTNEIKTVKAKKEIILTAGAIGSPQLLMLSGVGPKSHLDELGIETISDL-RVGYN 367
+F+ E++T AK E+I +AG+IGS QLL LSG+GPK+ L++ G+ + L VG N
Sbjct: 235 EFE--LAGELRTCFAKNEVISSAGSIGSVQLLQLSGIGPKTVLEKAGVTPVYHLPGVGQN 292
Query: 368 LVHHVGANLKFS----ILDNGVSD--NNGEIDEKGTYLEESNEGLSSMKGNMDEMLNDGR 421
L H+ ++ I NG D + G I GT + +GL + R
Sbjct: 293 LQDHLEVYFQYHCQKPITLNGKLDWFSKGLI---GTEWILTRKGLGATNHFESCAFIRSR 349
Query: 422 PGRSILSNTFNALFSNNNKEEDKMPCGRR-SIYARPTNLLPISRGRLVLRSADPFEYPKI 480
G + ++ L + + G ++ P P SRGR+ + SA+P + PKI
Sbjct: 350 AGLKWPNIQYHFLPAAMRYDGQAAFDGHGFQVHVGPNK--PESRGRVEIVSANPLDKPKI 407
Query: 481 HSNYLVMKQDIDVIIEGIRIIQKLTRTKALQKWDFQIDSTKMPECKHFEWDSNEYWECYI 540
NYL ++D + IR+ +++ A+ ++ + + E D ++
Sbjct: 408 QFNYLSTERDRQDWRDCIRLTREILAQPAMDEFRGEEIQPGINVATDAEIDQ------WV 461
Query: 541 KTYTLPENHPGGTCKMGPADDYSSVVDAQLRIHGVPNLRVMDASIFPTNINSNPIATIIM 600
K HP +CKMG DD +V+D + R+ G+ NLRV+D+S+FPT N N A IM
Sbjct: 462 KENVESAYHPSCSCKMGADDDPMAVLDEECRVRGITNLRVVDSSVFPTIPNGNLNAPTIM 521
Query: 601 IAEKGADMV 609
+AE+ AD++
Sbjct: 522 VAERAADLI 530
>sp|Q8D3K2|BETA_VIBVU Choline dehydrogenase OS=Vibrio vulnificus (strain CMCP6) GN=betA
PE=3 SV=1
Length = 560
Score = 239 bits (611), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 177/548 (32%), Positives = 280/548 (51%), Gaps = 28/548 (5%)
Query: 72 LQEEYDFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGPDEPTVTSVPGFAASAVGTHLDW 131
+Q+ YD+++VG G AG V+A RL E+ + VLLLEAG + ++ A S +
Sbjct: 1 MQQHYDYIIVGAGSAGCVLADRLSESGDHSVLLLEAGGSDKSIFIQMPTALSYPMNSEKY 60
Query: 132 KYKTERNKYACLSTGGICEWPRGKMLAGTGAMTGMMYTRSHPSIYDEWQRQGNPGWGFSD 191
++ E + A L G PRGK+L G+ ++ GM+Y R H +DEW+ QG GW +
Sbjct: 61 AWQFETDAEADLD-GRRLHCPRGKVLGGSSSINGMVYVRGHACDFDEWEEQGAKGWNYQA 119
Query: 192 VLRYFIKSEHNLNRDQVDPEYHGYDGPLKVQRFS--SYPPIGEDIIKAGKELGY-ASGDF 248
L YF ++E+ ++ + EY G DGPL + + P+ I AGKE GY + D+
Sbjct: 120 CLPYFRRAENWIDGED---EYRGGDGPLSTCAGNKMTLNPLYRAFIDAGKEAGYPETSDY 176
Query: 249 NGANQIGVNFAQVMVDNGVRSSTPRMFLRDKYKQDNLKVQLNAHVMKLNIDPKTKRALSV 308
NG Q G + V NGVR+ST +L K+ N K+ V ++ ++ KRA+ V
Sbjct: 177 NGYQQEGFGPMHMTVKNGVRASTSNAYLSRAKKRSNFKLIKGVVVQRILLE--EKRAVGV 234
Query: 309 QFKDTNTNEIKTVKAKKEIILTAGAIGSPQLLMLSGVGPKSHLDELGIETISDL-RVGYN 367
+F+ E++T AK E+I +AG+IGS QLL LSG+GPK+ L++ G+ + L VG N
Sbjct: 235 EFE--LAGELRTCFAKNEVISSAGSIGSVQLLQLSGIGPKTVLEKAGVTPVHHLPGVGQN 292
Query: 368 LVHHVGANLKFSILDNGVSDNNGEID--EKGTYLEE---SNEGLSSMKGNMDEMLNDGRP 422
L H+ ++ NG++D KG E + +GL + R
Sbjct: 293 LQDHLEVYFQYHC--QKPITLNGKLDWFSKGLIGAEWILTRKGLGATNHFESCAFIRSRA 350
Query: 423 GRSILSNTFNALFSNNNKEEDKMPCGRR-SIYARPTNLLPISRGRLVLRSADPFEYPKIH 481
G + ++ L + + G ++ P P SRGR+ + SA+P + PKI
Sbjct: 351 GLKWPNIQYHFLPAAMRYDGQAAFDGHGFQVHVGPNK--PESRGRVEIVSANPSDKPKIQ 408
Query: 482 SNYLVMKQDIDVIIEGIRIIQKLTRTKALQKWDFQIDSTKMPECKHFEWDSNEYWECYIK 541
NYL ++D + IR+ +++ A+ ++ + + E D ++K
Sbjct: 409 FNYLSTERDRQDWRDCIRLTREILAQPAMDEFRGEEIQPGINVATDAEIDQ------WVK 462
Query: 542 TYTLPENHPGGTCKMGPADDYSSVVDAQLRIHGVPNLRVMDASIFPTNINSNPIATIIMI 601
HP +CKMG DD +V+D + R+ G+ NLRV+D+S+FPT N N A IM+
Sbjct: 463 ENVESAYHPSCSCKMGADDDPMAVLDEECRVRGITNLRVVDSSVFPTIPNGNLNAPTIMV 522
Query: 602 AEKGADMV 609
AE+ AD++
Sbjct: 523 AERAADLI 530
>sp|Q9X2M2|BETA_STAXY Choline dehydrogenase OS=Staphylococcus xylosus GN=betA PE=3 SV=1
Length = 560
Score = 233 bits (595), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 176/571 (30%), Positives = 282/571 (49%), Gaps = 69/571 (12%)
Query: 72 LQEEYDFVVVGGGVAGPVVAGRLVENPNWKVLLLEAG-PDEP--TVTSVPGFAASAVGTH 128
++E YD++++GGG AG V+ GRL E+ + VL+LEAG D P + +P G
Sbjct: 1 MKESYDYIIIGGGSAGSVLGGRLSEDVSNNVLVLEAGRSDYPWDLLIQMPAALMYPAGNK 60
Query: 129 L-DWKYKTERNKYACLSTGGICEWPRGKMLAGTGAMTGMMYTRSHPSIYDEWQR-QGNPG 186
L DW Y+T + G RGK+L G+ ++ GM+Y R +P Y++W + +G
Sbjct: 61 LYDWIYETTPEPHM---DGRKVGHARGKVLGGSSSINGMIYQRGNPMDYEKWAKPEGMES 117
Query: 187 WGFSDVLRYFIKSEHNLNRDQVDPEYHGYDGPLKVQRFSSYPPIGEDIIKAGKELGY-AS 245
W ++ L YF + E + DP Y G+ GP+K++R + P+ + AG E GY +
Sbjct: 118 WDYAHCLPYFKRLETTFGSKKGDP-YRGHHGPIKLRRGPADNPLFQAFFDAGVEAGYNKT 176
Query: 246 GDFNGANQIGVNFAQVMVDNGVRSSTPRMFLRDKYKQDNLKVQLNAHVMKLNIDPKTKRA 305
D NG Q G V NG R S R +L K+ NL+VQ A V KLN + +
Sbjct: 177 PDVNGFRQEGFGPFDSQVHNGRRVSASRAYLHPAMKRKNLEVQTRAFVTKLNFE--GNKV 234
Query: 306 LSVQFKDTNTNEIKTVKAKKEIILTAGAIGSPQLLMLSGVGPKSHLDELGIETISDLRVG 365
V FK N + ++ KE+IL+ GAI SPQLL LSG+G HL LGIE
Sbjct: 235 TGVTFK---KNGKEHTESAKEVILSGGAINSPQLLQLSGIGDSEHLRSLGIEP------- 284
Query: 366 YNLVHHVGANLKFSILDNGVSDNNGEIDEKGTYLEESNEGLSSMKGNMDEMLND------ 419
+H G F D Y++ + + SM+ +++++
Sbjct: 285 --RIHLPGVGENFE-------------DHLEVYVQHACKQPVSMQPSLNKLKMPFIGLQW 329
Query: 420 --GRPGRSILSNTFNALFSNNNKEEDK-------MPCGRR-------SIYARPTNLLPI- 462
GR G + ++ F +N + D +P R + + ++ P+
Sbjct: 330 ILGRKGAAASNHFEGGGFVRSNDDVDYPNLMFHFLPIAVRYDGTKAPAAHGYQVHVGPMY 389
Query: 463 --SRGRLVLRSADPFEYPKIHSNYLVMKQDIDVIIEGIRIIQKLTRTKALQKWDFQIDST 520
SRG L ++S DPFE P+ NYL ++D +E I++ + + + KAL ++ + +
Sbjct: 390 SNSRGHLKIKSKDPFEKPEFVFNYLSTEEDKREWVEAIKVARNILKQKALDPFNGG-EIS 448
Query: 521 KMPECKHFEWDSNEYWECYIKTYTLPENHPGGTCKMGPADDYSSVVDAQ-LRIHGVPNLR 579
PE + ++E ++K HP +C+MGPA D SVVD + ++HG+ NLR
Sbjct: 449 PGPEVQ-----TDEEIIEWVKRDGETALHPSCSCRMGPASDEMSVVDPETFKVHGMENLR 503
Query: 580 VMDASIFPTNINSNPIATIIMIAEKGADMVK 610
V+DAS+ P N N + ++M+AE+ +D+++
Sbjct: 504 VVDASVMPRTTNGNIHSPVLMMAERASDIIR 534
>sp|Q6LGH5|BETA_PHOPR Choline dehydrogenase OS=Photobacterium profundum GN=betA PE=3 SV=1
Length = 568
Score = 227 bits (578), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 168/549 (30%), Positives = 277/549 (50%), Gaps = 38/549 (6%)
Query: 76 YDFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGPDE-------PTVTSVPGFAASAVGTH 128
YD+++VG G AG V+A RL + +LLLEAG + PT S P +
Sbjct: 5 YDYIIVGAGSAGCVLADRLSASGEHYILLLEAGGSDRSIFIQMPTALSYPMNSEKYA--- 61
Query: 129 LDWKYKTERNKYACLSTGGICEWPRGKMLAGTGAMTGMMYTRSHPSIYDEWQRQGNPGWG 188
W+++T+ A L + + PRG++L G+ ++ GM+Y R H YDEW QG GW
Sbjct: 62 --WQFETQPE--AGLDSRSL-HCPRGRVLGGSSSINGMVYVRGHACDYDEWVEQGAEGWS 116
Query: 189 FSDVLRYFIKSEHNLNRDQVDPEYHGYDGPLKVQRFSSYP--PIGEDIIKAGKELGY-AS 245
+ + L YF ++E ++ + Y G DGP+ + P+ + I AG++ GY +
Sbjct: 117 YQECLPYFRRAESWIHGEDT---YRGGDGPVGTCNGNDMELNPLYQAFIDAGQQAGYPKT 173
Query: 246 GDFNGANQIGVNFAQVMVDNGVRSSTPRMFLRDKYKQDNLKVQLNAHVMKLNIDPKTKRA 305
D+NG Q G + VD G+R+ST +LR K+ NL V+ K+ I K K+A
Sbjct: 174 DDYNGYQQEGFGPMHMTVDKGIRASTSNAYLRRAMKRSNLTVRKGVVTRKVLI--KNKQA 231
Query: 306 LSVQFKDTNTNEIKTVKAKKEIILTAGAIGSPQLLMLSGVGPKSHLDELGIETISDL-RV 364
+ V+ + ++++V A E++L+AG++GSPQLL LSG+GPK+ L++ GI DL V
Sbjct: 232 IGVEIE--VGGKVQSVYANTEVLLSAGSVGSPQLLQLSGIGPKAVLEQAGIAVKHDLPGV 289
Query: 365 GYNLVHHVGANLKFSILDNGVSDNNGEIDEK---GTYLEESNEGLSSMKGNMDEMLNDGR 421
G NL H+ +++ ++ + K GT +GL + R
Sbjct: 290 GENLQDHLEVYFQYACHQPITLNSKLGLISKGLIGTRWILQKDGLGATNHFESCAFIRSR 349
Query: 422 PGRSILSNTFNALFSNNNKEEDKMPCGRR-SIYARPTNLLPISRGRLVLRSADPFEYPKI 480
G + ++ L + + G ++ P P SRGR+ + SADP + P I
Sbjct: 350 AGLKWPNIQYHFLPAAMRYDGQAAFDGHGFQVHVGPNK--PQSRGRIWITSADPHQKPNI 407
Query: 481 HSNYLVMKQDIDVIIEGIRIIQKLTRTKALQKWDFQIDSTKMPECKHFEWDSNEYWECYI 540
NY+ +QD + IR+ +++ A+ D++ + + + S+E + ++
Sbjct: 408 EFNYISTEQDKQDWRDCIRLTREILAQPAMD--DYRGEEIQ----PGADITSDEAMDAWV 461
Query: 541 KTYTLPENHPGGTCKMGPADDYSSVVDAQLRIHGVPNLRVMDASIFPTNINSNPIATIIM 600
+ HP TCKMG +D +V++ ++ G+ +LRV+D+S+FPT N N A IM
Sbjct: 462 RQNVESAYHPSCTCKMGSDNDPMTVLNKDCQVRGIDSLRVIDSSVFPTIPNGNLNAPTIM 521
Query: 601 IAEKGADMV 609
+AEK AD +
Sbjct: 522 VAEKAADAI 530
>sp|A7N2P9|BETA_VIBHB Choline dehydrogenase OS=Vibrio harveyi (strain ATCC BAA-1116 /
BB120) GN=betA PE=3 SV=1
Length = 569
Score = 225 bits (574), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 181/572 (31%), Positives = 276/572 (48%), Gaps = 76/572 (13%)
Query: 72 LQEEYDFVVVGGGVAGPVVAGRLVENPNWKVLLLEAG-PDEPTVTSVPGFAASAVGTH-L 129
+Q+ YD+++VG G AG V+A RL E+ +VLLLEAG D+ +P + + T
Sbjct: 1 MQQHYDYIIVGAGSAGCVLADRLSESGQHQVLLLEAGGSDKSIFIQMPTALSYPMNTEKY 60
Query: 130 DWKYKTERNKYACLSTGGICEWPRGKMLAGTGAMTGMMYTRSHPSIYDEWQRQGNPGWGF 189
W+++T + G PRGK+L G+ ++ GM+Y R H +DEW+ +G GW +
Sbjct: 61 AWQFETVAEEGL---DGRQLHCPRGKVLGGSSSINGMVYVRGHACDFDEWEAEGAKGWNY 117
Query: 190 SDVLRYFIKSEHNLNRDQVDPEYHGYDGPLKVQRFSSYP--PIGEDIIKAGKELGY-ASG 246
L YF K+E EY G GP+ + P+ + I+AGK+ GY +
Sbjct: 118 QACLPYFRKAETWTGGAD---EYRGGSGPVGTCNGNDMKLNPLYQAFIEAGKDAGYPETQ 174
Query: 247 DFNGANQIGVNFAQVMVDNGVRSSTPRMFLRDKYKQDNLKVQ--LNAHVMKLNIDPKTKR 304
D+NG Q G + VD GVR+ST +L K+ N + + AH + L + K+
Sbjct: 175 DYNGYQQEGFGPMHMTVDKGVRASTSNAYLSRAKKRSNFTLMKGVTAHRILL----EGKK 230
Query: 305 ALSVQFKDTNTNEIKTVKAKKEIILTAGAIGSPQLLMLSGVGPKSHLDELGIETISDLR- 363
A+ ++F+ + EIK A KE++ +AG+IGS QLL LSG+GPK+ LD+ GIE L
Sbjct: 231 AVGIEFE--QSGEIKQCFANKEVVSSAGSIGSVQLLQLSGIGPKTVLDKAGIEVKHTLEG 288
Query: 364 VGYNLVHH------------VGANLKFSILDNGVSDNNGEIDEKG----TYLE-----ES 402
VG NL H + N K ++ G+ + KG + E S
Sbjct: 289 VGKNLQDHLEVYFQYHCKQPITLNSKLGLISKGLIGTEWILTRKGLGATNHFESCAFIRS 348
Query: 403 NEGLSSMKGNMD----EMLNDGRPGRSILSNTFNALFSNNNKEEDKMPCGRRSIYARPTN 458
EGL S M DGR A F + + ++ P
Sbjct: 349 REGLKSPNIQFHFLPAAMRYDGR-----------AAFDGHGFQ----------VHVGPNK 387
Query: 459 LLPISRGRLVLRSADPFEYPKIHSNYLVMKQDIDVIIEGIRIIQKLTRTKALQKWDFQID 518
P SRG + + SA+P + PKI NY+ +QD + IR+ +++ A+ D
Sbjct: 388 --PESRGSVEVVSANPNDKPKIEFNYISTEQDKQDWRDCIRLTREILNQPAM-------D 438
Query: 519 STKMPECK-HFEWDSNEYWECYIKTYTLPENHPGGTCKMGPADDYSSVVDAQLRIHGVPN 577
+ + E + S+E ++K HP +CKMG DD +V++ ++ G+
Sbjct: 439 AFRGEEIQPGLNITSDEAIGEWVKQNVESAYHPSCSCKMGSNDDPMAVLNEACQVRGIEG 498
Query: 578 LRVMDASIFPTNINSNPIATIIMIAEKGADMV 609
LRV+D+SIFPT N N A IM+AE+ ADM+
Sbjct: 499 LRVVDSSIFPTIPNGNLNAPTIMVAERAADMI 530
>sp|Q985M5|BETA_RHILO Choline dehydrogenase OS=Rhizobium loti (strain MAFF303099) GN=betA
PE=3 SV=1
Length = 550
Score = 225 bits (573), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 166/545 (30%), Positives = 265/545 (48%), Gaps = 31/545 (5%)
Query: 75 EYDFVVVGGGVAGPVVAGRLVENPNWKVLLLE-AGPDEPTVTSVPGFAASAVGTHL-DWK 132
E DFV++G G AG +A RL E+ V+++E G D + +P + + L DW
Sbjct: 3 EADFVIIGSGSAGSAMAYRLSEDGKHSVIVIEFGGSDIGPLIQMPSALSIPLNMSLYDWG 62
Query: 133 YKTERNKYACLSTGGICEWPRGKMLAGTGAMTGMMYTRSHPSIYDEWQRQGNPGWGFSDV 192
+ +E + G + PRGK++ G+ ++ GM+Y R H +D W +G GWGF+DV
Sbjct: 63 FASEPEPHLG---GRVLATPRGKVIGGSSSINGMVYVRGHARDFDHWAEEGATGWGFADV 119
Query: 193 LRYFIKSEHNLNRDQVDPEYHGYDGPLKVQRFSSYPPIGEDIIKAGKELGYA-SGDFNGA 251
L YF + E N D + + G+ GPL VQR S P+ ++AG++ G+ + D+NG+
Sbjct: 120 LPYFKRMEDN---DGGEDGWRGHGGPLHVQRGSRKNPLYGAFVEAGRQAGFELTDDYNGS 176
Query: 252 NQIGVNFAQVMVDNGVRSSTPRMFLRDKYKQDNLKVQLNAHVMKLNIDPKTKRALSVQFK 311
Q G + + G R S +L+ K+ N+ + + ++ I+ +RA+ V+ +
Sbjct: 177 KQEGFGPMEQTISGGRRWSAASAYLKPALKRKNVSL-VKGFARRVIIE--NQRAIGVEIE 233
Query: 312 DTNTNEIKTVKAKKEIILTAGAIGSPQLLMLSGVGPKSHLDELGIETISDL-RVGYNLVH 370
+I+ VKA++E+I+ A +I SP++LMLSG+GP HL E GI ++D VG NL
Sbjct: 234 --AHKQIQVVKARREVIVAASSINSPKILMLSGIGPAEHLRENGIAVVADRPGVGRNLQD 291
Query: 371 HVGANLKFS----ILDNGVSD--NNGEIDEKGTYLEESNEGLSSMKGNMDEMLNDGRPGR 424
H+ ++ I N V + + I + + + GL + R G
Sbjct: 292 HMELYIQQESTKPITLNSVLNPFSKALIGAQWLFFK---SGLGATNHFEAAAFVRSRAGV 348
Query: 425 SILSNTFNALFSNNNKEEDKMPCGRRSIYARPTNLLPISRGRLVLRSADPFEYPKIHSNY 484
++ + + K A + SRG + LRS DP P I NY
Sbjct: 349 DYPDIQYH-FIPAAVRYDGKAAAKSHGFQAHVGPMRSKSRGSVTLRSPDPKAKPVIRFNY 407
Query: 485 LVMKQDIDVIIEGIRIIQKLTRTKALQKWDFQIDSTKMPECKHFEWDSNEYWECYIKTYT 544
+ D IR+ +++ A + Q ++ H + D + + +I+ +
Sbjct: 408 MSHPDDWTEFRHCIRLTREIFGQSAFDAFRGQ----EISPGSHVQSDDD--LDVFIRDHA 461
Query: 545 LPENHPGGTCKMGPADDYSSVVDAQLRIHGVPNLRVMDASIFPTNINSNPIATIIMIAEK 604
HP GTCKMG ADD +SVVD + R+ GV LRV D+SIFP N N A IM EK
Sbjct: 462 ESAYHPCGTCKMGRADDVTSVVDPECRVIGVDGLRVADSSIFPRVTNGNLNAPSIMTGEK 521
Query: 605 GADMV 609
+D +
Sbjct: 522 ASDHI 526
>sp|A8GBX9|BETA_SERP5 Choline dehydrogenase OS=Serratia proteamaculans (strain 568)
GN=betA PE=3 SV=1
Length = 555
Score = 223 bits (567), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 176/568 (30%), Positives = 278/568 (48%), Gaps = 67/568 (11%)
Query: 75 EYDFVVVGGGVAGPVVAGRLVENPNWKVLLLEAG-PDEPT--VTSVPGFAASAV-GTHLD 130
EYD++++G G AG V+A RL E+ + VLLLEAG PD T +P A + G +
Sbjct: 2 EYDYIIIGAGSAGNVLATRLTEDADVSVLLLEAGGPDYRMDFRTQMPAALAFPLQGRRYN 61
Query: 131 WKYKTERNKYACLSTGGICEWPRGKMLAGTGAMTGMMYTRSHPSIYDEWQRQ-GNPGWGF 189
W Y+T+ + E RGK L G+ + GM Y R + +D W + G W +
Sbjct: 62 WAYETDPEPHM---NNRRMECGRGKGLGGSSLINGMCYIRGNAMDFDNWAKAPGLEDWSY 118
Query: 190 SDVLRYFIKSEHNLNRDQVDPEYHGYDGPLKVQRFSSYPPIGED-----IIKAGKELGYA 244
D L YF K+E RD ++HG DGP+ V + P G + +++AG + GY
Sbjct: 119 LDCLPYFRKAE---TRDIGPNDFHGGDGPVSV----TTPKAGNNELFHAMVEAGVQAGYP 171
Query: 245 -SGDFNGANQIGVN-FAQVMVDNGVRSSTPRMFLRDKYKQDNLKVQLNAHVMKLNIDPKT 302
+ D NG Q G + + G R+ST R +L + NLK+ +A ++ D
Sbjct: 172 RTEDLNGYQQEGFGPMDRTVTPKGRRASTARGYLDQARSRPNLKIVTHALTDRIRFD--G 229
Query: 303 KRALSVQFKDTNTNEIKTVKAKKEIILTAGAIGSPQLLMLSGVGPKSHLDELGIETISDL 362
KRA+ V + ++ + +A++E++L AGAI SPQ+L SGVGP + L+ L I+ + +L
Sbjct: 230 KRAVGVDYLQGEAKDVTSARARREVLLCAGAIASPQILQRSGVGPAALLNRLDIDLVHEL 289
Query: 363 -RVGYNLVHHVGANLKFSILDNGVSDNNGEIDEKGTYLEESNEGLSSMKGNMDEMLNDGR 421
VG NL H+ L+++ +K L + + + K + + N
Sbjct: 290 PGVGENLQDHLEMYLQYAC-------------KKPVSLYPALQWFNQPKIGAEWLFNGSG 336
Query: 422 PGRSILSNTFNALFSNNNKEEDKMP------------------CGRRSIYARPTNLLPIS 463
G SN F A ++EE P A ++ S
Sbjct: 337 IG---ASNQFEAGGFIRSREEFAWPNIQYHFLPVAINYNGSNAVKEHGFQAHVGSMRSPS 393
Query: 464 RGRLVLRSADPFEYPKIHSNYLVMKQDIDVIIEGIRIIQKLTRTKALQKWDFQIDSTKMP 523
RGR+ ++S DP ++P I NY+ +QD + IRI +++ AL ++ + + + P
Sbjct: 394 RGRVQVKSKDPRQHPSILFNYMATEQDWQEFRDAIRITREIMAQPALDEYRGR-EISPGP 452
Query: 524 ECKHFEWDSNEYWECYIKTYTLPENHPGGTCKMGPADDYSSVVDAQLRIHGVPNLRVMDA 583
E + ++E + +++ + HP +CKMG +D +VVD Q R+HG+ LRV+DA
Sbjct: 453 EVQ-----TDEQLDAFVREHAETAFHPSCSCKMG--EDEMAVVDGQGRVHGLEGLRVVDA 505
Query: 584 SIFPTNINSNPIATIIMIAEKGADMVKE 611
SI P I N AT IMIAEK AD +++
Sbjct: 506 SIMPLIITGNLNATTIMIAEKIADRIRQ 533
>sp|Q4A0Q1|BETA_STAS1 Choline dehydrogenase OS=Staphylococcus saprophyticus subsp.
saprophyticus (strain ATCC 15305 / DSM 20229) GN=betA
PE=3 SV=1
Length = 560
Score = 223 bits (567), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 174/571 (30%), Positives = 278/571 (48%), Gaps = 69/571 (12%)
Query: 72 LQEEYDFVVVGGGVAGPVVAGRLVENPNWKVLLLEAG-PDEP--TVTSVPGFAASAVGTH 128
+++ YD++++GGG AG V+ R+ E+ + VL+LEAG D P + +P G
Sbjct: 1 MKQSYDYIIIGGGSAGSVLGSRISEDVSNNVLVLEAGRSDYPWDLLIQMPAALMYPAGNK 60
Query: 129 L-DWKYKTERNKYACLSTGGICEWPRGKMLAGTGAMTGMMYTRSHPSIYDEWQR-QGNPG 186
L DW Y+T + G RGK+L G+ ++ GM+Y R +P Y++W + +G
Sbjct: 61 LYDWIYETTPEPHM---DGRKVGHARGKVLGGSSSINGMIYQRGNPMDYEKWAKPEGMDS 117
Query: 187 WGFSDVLRYFIKSEHNLNRDQVDPEYHGYDGPLKVQRFSSYPPIGEDIIKAGKELGY-AS 245
W ++ L YF + E + D ++ G+ GP+K++R + P+ + AG E GY +
Sbjct: 118 WDYAHCLPYFKRLEKTFGATK-DDQFRGHHGPIKLRRGPADNPLFQAFFDAGVEAGYNKT 176
Query: 246 GDFNGANQIGVNFAQVMVDNGVRSSTPRMFLRDKYKQDNLKVQLNAHVMKLNIDPKTKRA 305
D NG Q G V NG R S R +L K+ NL+VQ A V KLN + +
Sbjct: 177 PDVNGFRQEGFGPFDSQVHNGRRVSASRAYLHPAMKRKNLEVQTRAFVTKLNFE--GNKV 234
Query: 306 LSVQFKDTNTNEIKTVKAKKEIILTAGAIGSPQLLMLSGVGPKSHLDELGIETISDLRVG 365
V FK TV AK E+IL+ GAI SPQLL LSG+G HL LGIE
Sbjct: 235 TGVTFKKNGREH--TVNAK-EVILSGGAINSPQLLQLSGIGDSEHLRSLGIEP------- 284
Query: 366 YNLVHHVGANLKFSILDNGVSDNNGEIDEKGTYLEESNEGLSSMKGNMDEMLND------ 419
+H G F D Y++ + + SM+ +++++
Sbjct: 285 --RIHLPGVGENFE-------------DHLEVYVQHACKEPVSMQPSLNKLKMPFIGLQW 329
Query: 420 --GRPGRSILSNTFNALFSNNNKEEDK-------MPCGRR-------SIYARPTNLLPI- 462
GR G + ++ F +N++ D +P R + + ++ P+
Sbjct: 330 IFGRKGAAASNHFEGGGFVRSNEDVDYPNLMFHFLPIAVRYDGTKAPAAHGYQVHVGPMY 389
Query: 463 --SRGRLVLRSADPFEYPKIHSNYLVMKQDIDVIIEGIRIIQKLTRTKALQKWDFQIDST 520
SRG L ++S DPF P NYL ++D +E I++ + + KAL ++ + +
Sbjct: 390 SNSRGHLKIKSKDPFVKPDFVFNYLSTEEDKREWVEAIKVARNILGQKALDPYNGG-EIS 448
Query: 521 KMPECKHFEWDSNEYWECYIKTYTLPENHPGGTCKMGPADDYSSVVDAQ-LRIHGVPNLR 579
PE + ++E ++K HP +C+MGPA D SVVD + ++HG+ NLR
Sbjct: 449 PGPEVQ-----TDEEIIEWVKRDGETALHPSCSCRMGPASDEMSVVDPETFKVHGMENLR 503
Query: 580 VMDASIFPTNINSNPIATIIMIAEKGADMVK 610
V+DAS+ P N N + ++M+AEK AD+++
Sbjct: 504 VVDASVMPRTTNGNIHSPVLMMAEKAADIIR 534
>sp|Q8UH55|BETA_AGRT5 Choline dehydrogenase OS=Agrobacterium tumefaciens (strain C58 /
ATCC 33970) GN=betA PE=3 SV=2
Length = 549
Score = 219 bits (559), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 165/552 (29%), Positives = 266/552 (48%), Gaps = 45/552 (8%)
Query: 75 EYDFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGPDE--PTVTSVPGFAASAVGTHLDWK 132
+ D+V+VG G AG +A RL E+ + V+++EAG + P + A +W
Sbjct: 2 QADYVIVGSGSAGSAIAYRLSEDGRYSVIVIEAGGSDFGPFIQMPAALAWPMSMKRYNWG 61
Query: 133 YKTERNKYACLSTGGICEWPRGKMLAGTGAMTGMMYTRSHPSIYDEWQRQGNPGWGFSDV 192
Y +E L I PRGK++ G+ ++ G++Y R H ++ W+ G GW ++DV
Sbjct: 62 YLSEPEP--NLDNRRITA-PRGKVIGGSSSINGLVYVRGHAEDFNRWEELGAQGWAYADV 118
Query: 193 LRYFIKSEHNLNRDQVDPEYHGYDGPLKVQRFSSYPPIGEDIIKAGKELGYA-SGDFNGA 251
L YF + EH+ ++ + G DGPL VQR P+ I+AG + G+ + D+NG+
Sbjct: 119 LPYFKRMEHSHGGEE---GWRGTDGPLHVQRGPVSNPLFHAFIQAGAQAGFELTDDYNGS 175
Query: 252 NQIGVNFAQVMVDNGVRSSTPRMFLRDKYKQDNLKVQLNAHVMKLNIDPKTKRALSVQFK 311
Q G + + NG R S +L+ K+ N+ + +N K+ I+ RA+ V+ +
Sbjct: 176 KQEGFGLMEQTIHNGRRWSAANAYLKPALKRGNVTL-VNGFARKVIIE--NGRAVGVEIE 232
Query: 312 DTNTNEIKTVKAKKEIILTAGAIGSPQLLMLSGVGPKSHLDELGIETISDL-RVGYNLVH 370
++TVKA +E+I++A + SP+LLMLSG+GP +HL ++GIE +D VG NL
Sbjct: 233 --RRGRVETVKANREVIVSASSFNSPKLLMLSGIGPAAHLKDMGIEVKADRPGVGANLQD 290
Query: 371 HVGANLK---------FSILD---NGVSDNNGEIDEKGTYLEESNEGLSSMKGNMDEMLN 418
H+ + +S L GV+ + + G E + ++
Sbjct: 291 HMEFYFQQVSTKPVSLYSWLPWFWQGVAGAQWLLSKGGLGASNQFEACAFLRSAPGLKQP 350
Query: 419 DGRPGRSILSNTFNALFSNNNKEEDKMPCGRRSIYARPTNLLPISRGRLVLRSADPFEYP 478
D I + S + K K A L SRG + LRSADP + P
Sbjct: 351 D------IQYHFLPVAISYDGKAAAK----SHGFQAHVGYNLSKSRGNVTLRSADPHDDP 400
Query: 479 KIHSNYLVMKQDIDVIIEGIRIIQKLTRTKALQKWDFQIDSTKMPECKHFE-WDSNEYWE 537
I NY+ +D + +R+ +++ KA D + PE + E +++E +
Sbjct: 401 VIRFNYMSHPEDWEKFRHCVRLTREIFGQKAF-------DDFRGPEIQPGENIETDEQID 453
Query: 538 CYIKTYTLPENHPGGTCKMGPADDYSSVVDAQLRIHGVPNLRVMDASIFPTNINSNPIAT 597
+++ + HP GTC+MG +D +VVD + R+ GV LRV D+SIFP N
Sbjct: 454 AFLREHLESAYHPCGTCRMGDRNDPMAVVDPECRVIGVEGLRVADSSIFPHVTYGNLNGP 513
Query: 598 IIMIAEKGADMV 609
IM EK AD +
Sbjct: 514 SIMTGEKAADHI 525
>sp|Q8G1Z8|BETA_BRUSU Choline dehydrogenase OS=Brucella suis biovar 1 (strain 1330)
GN=betA PE=3 SV=1
Length = 549
Score = 218 bits (556), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 164/556 (29%), Positives = 264/556 (47%), Gaps = 53/556 (9%)
Query: 75 EYDFVVVGGGVAGPVVAGRLVENPNWKVLLLEAG-PDEPTVTSVPGFAASAVGTH-LDWK 132
E DFV++G G AG +A RL EN + V+++E G PD + +P + + DW
Sbjct: 2 EADFVIIGSGSAGSAMAYRLSENGRYSVIVIEYGVPDVGPLIQMPAALSFPMNMETYDWG 61
Query: 133 YKTERNKYACLSTGGICEWPRGKMLAGTGAMTGMMYTRSHPSIYDEWQRQGNPGWGFSDV 192
+ +E + G PRGK+L G+ ++ GM+Y R H +D W + G GW ++DV
Sbjct: 62 FSSEPEPHI---GGRSLVTPRGKVLGGSSSINGMVYVRGHACDFDHWSQSGARGWAYADV 118
Query: 193 LRYFIKSEHNLNRDQVDPEYHGYDGPLKVQRFSSYPPIGEDIIKAGKELGY-ASGDFNGA 251
L YF + E N + G +GPL VQR P+ ++AG + G+ + D+NG
Sbjct: 119 LPYFKRME---NSQGGQEGWRGTNGPLYVQRGKRDNPLFHAFVEAGHQAGFEVTDDYNGE 175
Query: 252 NQIGVNFAQVMVDNGVRSSTPRMFLRDKYKQDNLKVQLNAHVMKLNIDPKTKRALSVQFK 311
Q G + + NG R S +L+ K+ N+K+ + K+ ++ KRA+ V+ +
Sbjct: 176 KQEGFGPMEQTIHNGRRWSAANAYLKPALKRPNVKL-VKGFARKIVLE--GKRAVGVEIE 232
Query: 312 DTNTNEIKTVKAKKEIILTAGAIGSPQLLMLSGVGPKSHLDELGIETISDL-RVGYNLVH 370
T T++A++E+I+ A +I SP+LLMLSG+GP +HL E GI+ ++D VG NL
Sbjct: 233 AGRT--FSTIRARREVIIAASSINSPKLLMLSGIGPAAHLKEHGIDLVADRPGVGQNLQD 290
Query: 371 HVGANLKFSILDNGVSDNNGEIDEKGTYLEESNEGLSSMKGNMDEMLNDGRPGRSILSNT 430
H+ ++ E + T E N S + ++ +L + G ++
Sbjct: 291 HLEVYIQ------------QECTQPITLYSELNL-FSKARIGVEWLLF--KTGDGATNHF 335
Query: 431 FNALFSNNN-----------------KEEDKMPCGRRSIYARPTNLLPISRGRLVLRSAD 473
+A F + + + K A + SRG + LRSA+
Sbjct: 336 ESAAFVRSKAGVEYPDIQYHFLPVAIRYDGKAAAQSHGFQAHVGPMRSKSRGSVTLRSAN 395
Query: 474 PFEYPKIHSNYLVMKQDIDVIIEGIRIIQKLTRTKALQKWDFQIDSTKMPECKHFEWDSN 533
P E P I NY+ + D +R+ +++ A + ++ H + D
Sbjct: 396 PREKPVIKFNYMSHEDDWADFRHCVRLTREIFGQAAFDPY----RGAEIQPGAHVQTDDE 451
Query: 534 EYWECYIKTYTLPENHPGGTCKMGPADDYSSVVDAQLRIHGVPNLRVMDASIFPTNINSN 593
+ +I+ + HP GTCKMG DD +VVD + R+ GV LRV D+SIFP N N
Sbjct: 452 --IDNFIREHVESAFHPCGTCKMGAVDDPMAVVDPECRVIGVEGLRVADSSIFPRITNGN 509
Query: 594 PIATIIMIAEKGADMV 609
IM+ EK +D +
Sbjct: 510 LNGPSIMVGEKASDHI 525
>sp|B7N8L3|BETA_ECOLU Choline dehydrogenase OS=Escherichia coli O17:K52:H18 (strain
UMN026 / ExPEC) GN=betA PE=3 SV=1
Length = 556
Score = 217 bits (552), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 184/557 (33%), Positives = 271/557 (48%), Gaps = 47/557 (8%)
Query: 75 EYDFVVVGGGVAGPVVAGRLVENPNWKVLLLEAG-PDE--PTVTSVPGFAASAV-GTHLD 130
++D++++G G AG V+A RL E+PN VLLLEAG PD T +P A + G +
Sbjct: 2 QFDYIIIGAGSAGNVLATRLTEDPNTTVLLLEAGGPDYRFDFRTQMPAALAFPLQGKRYN 61
Query: 131 WKYKTERNKYACLSTGGICEWPRGKMLAGTGAMTGMMYTRSHPSIYDEW-QRQGNPGWGF 189
W Y+TE + E RGK L G+ + GM Y R + D W Q G W +
Sbjct: 62 WAYETEPEPFM---NNRRMECGRGKGLGGSSLINGMCYIRGNALDLDNWAQEPGLENWSY 118
Query: 190 SDVLRYFIKSEHNLNRDQVDPEYHGYDGPLKVQRFSSYP---PIGEDIIKAGKELGYA-S 245
D L Y+ K+E RD + +YHG DGP+ V +S P P+ E +I+AG + GY +
Sbjct: 119 LDCLPYYRKAE---TRDVGENDYHGGDGPVSVT--TSKPGVNPLFEAMIEAGVQAGYPRT 173
Query: 246 GDFNGANQIGVN-FAQVMVDNGVRSSTPRMFLRDKYKQDNLKVQLNAHVMKLNIDPKTKR 304
D NG Q G + + +G R+ST R +L + NL ++ H M +I KR
Sbjct: 174 DDLNGYQQEGFGPMDRTVTPHGRRASTARGYLDQAKSRPNLTIR--THAMTDHIIFDGKR 231
Query: 305 ALSVQFKDTNTNEIKTVKAKKEIILTAGAIGSPQLLMLSGVGPKSHLDELGIETISDL-R 363
A+ V++ + ++ A KE++L AGAI SPQ+L SGVG L E I + DL
Sbjct: 232 AVGVEWLEGDSTIPTRATANKEVLLCAGAIASPQILQRSGVGSAELLAEFDIPLVHDLPG 291
Query: 364 VGYNLVHHVGANLKF------SILDNGVSDNNGEIDEK----GTYLEESNEGLSSMKGNM 413
VG NL H+ L++ S+ N +I + GT + SN +
Sbjct: 292 VGENLQDHLEMYLQYECKEPVSLYPALQWWNQPKIGAEWLFGGTGVGASNHFEAGGFIRS 351
Query: 414 DEMLNDGRPGRSILSNTFNALFSNNNKEEDKMPCGRRSIYARPTNLLPISRGRLVLRSAD 473
E L N SN KE ++ SRG + ++S D
Sbjct: 352 REEFAWPNIQYHFLPVAINYNGSNAVKEH--------GFQCHVGSMRSPSRGHVRIKSRD 403
Query: 474 PFEYPKIHSNYLVMKQDIDVIIEGIRIIQKLTRTKALQKWDFQIDSTKMPECKHFEWDSN 533
P ++P I NY+ +QD + IRI +++ AL ++ + S + EC+ ++
Sbjct: 404 PHQHPAILFNYMSHEQDWQEFRDAIRITREIMHQPALDQYRGREISPGV-ECQ-----TD 457
Query: 534 EYWECYIKTYTLPENHPGGTCKMGPADDYSSVVDAQLRIHGVPNLRVMDASIFPTNINSN 593
E + +++ + HP GTCKMG D +VVD + R+HG+ LRV+DASI P I N
Sbjct: 458 EQLDEFVRNHAETAFHPCGTCKMG--YDEMAVVDGEGRVHGLEGLRVVDASIMPQIITGN 515
Query: 594 PIATIIMIAEKGADMVK 610
AT IMI EK ADM++
Sbjct: 516 LNATTIMIGEKMADMIR 532
>sp|A9M9H8|BETA_BRUC2 Choline dehydrogenase OS=Brucella canis (strain ATCC 23365 / NCTC
10854) GN=betA PE=3 SV=1
Length = 549
Score = 216 bits (550), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 162/556 (29%), Positives = 266/556 (47%), Gaps = 53/556 (9%)
Query: 75 EYDFVVVGGGVAGPVVAGRLVENPNWKVLLLEAG-PDEPTVTSVPGFAASAVGTH-LDWK 132
E DFV++G G AG +A RL E+ + V+++E G PD + +P + + DW
Sbjct: 2 EADFVIIGSGSAGSAMAYRLSEDGRYSVIVIEYGVPDVGPLIQMPAALSFPMNMETYDWG 61
Query: 133 YKTERNKYACLSTGGICEWPRGKMLAGTGAMTGMMYTRSHPSIYDEWQRQGNPGWGFSDV 192
+ +E + G PRGK+L G+ ++ GM+Y R H +D W + G GW ++DV
Sbjct: 62 FSSEPEPHI---GGRSLVTPRGKVLGGSSSINGMVYVRGHACDFDHWSQSGARGWAYADV 118
Query: 193 LRYFIKSEHNLNRDQVDPEYHGYDGPLKVQRFSSYPPIGEDIIKAGKELGY-ASGDFNGA 251
L YF + E++ + + G +GPL VQR P+ ++AG + G+ + D+NG
Sbjct: 119 LPYFKRMENSQGGQE---GWRGTNGPLYVQRGKRDNPLFHAFVEAGHQAGFEVADDYNGE 175
Query: 252 NQIGVNFAQVMVDNGVRSSTPRMFLRDKYKQDNLKVQLNAHVMKLNIDPKTKRALSVQFK 311
Q G + + NG R S +L+ K+ N+K+ + K+ ++ KRA+ V+ +
Sbjct: 176 KQEGFGPMEQTIHNGRRWSAANAYLKPALKRPNVKL-VKGFARKIVLE--GKRAVGVEIE 232
Query: 312 DTNTNEIKTVKAKKEIILTAGAIGSPQLLMLSGVGPKSHLDELGIETISDL-RVGYNLVH 370
T T++A++E+I+ A +I SP+LLMLSG+GP +HL E GI+ ++D VG NL
Sbjct: 233 AGRT--FSTIRARREVIIAASSINSPKLLMLSGIGPAAHLKEHGIDLVADRPGVGQNLQD 290
Query: 371 HVGANLKFSILDNGVSDNNGEIDEKGTYLEESNEGLSSMKGNMDEMLNDGRPGRSILSNT 430
H+ ++ E + T E N S + ++ +L + G ++
Sbjct: 291 HLEVYIQ------------QECTQPITLYSELNL-FSKARIGVEWLLF--KTGDGATNHF 335
Query: 431 FNALFSNNN-----------------KEEDKMPCGRRSIYARPTNLLPISRGRLVLRSAD 473
+A F + + + K A + SRG + LRSA+
Sbjct: 336 ESAAFVRSKAGVEYPDIQYHFLPVAIRYDGKAAAQSHGFQAHVGPMRSKSRGSVTLRSAN 395
Query: 474 PFEYPKIHSNYLVMKQDIDVIIEGIRIIQKLTRTKALQKWDFQIDSTKMPECKHFEWDSN 533
P E P I NY+ + D +R+ +++ A + ++ H + D
Sbjct: 396 PREKPVIKFNYMSHEDDWADFRHCVRLTREIFGQAAFDPY----RGAEIQPGAHVQTDDE 451
Query: 534 EYWECYIKTYTLPENHPGGTCKMGPADDYSSVVDAQLRIHGVPNLRVMDASIFPTNINSN 593
+ +I+ + HP GTCKMG DD +VVD + R+ GV LRV D+SIFP N N
Sbjct: 452 --IDNFIREHVESAFHPCGTCKMGAVDDPMAVVDPECRVIGVEGLRVADSSIFPRITNGN 509
Query: 594 PIATIIMIAEKGADMV 609
IM+ EK +D +
Sbjct: 510 LNGPSIMVGEKASDHI 525
>sp|Q4K4K7|BETA_PSEF5 Choline dehydrogenase OS=Pseudomonas fluorescens (strain Pf-5 /
ATCC BAA-477) GN=betA PE=3 SV=1
Length = 567
Score = 216 bits (549), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 180/558 (32%), Positives = 273/558 (48%), Gaps = 43/558 (7%)
Query: 72 LQEEYDFVVVGGGVAGPVVAGRLVENPNWKVLLLEAG-PDE--PTVTSVPGFAASAV-GT 127
+ +EYD+++VG G AG +A RL E+ VLLLEAG PD T +P A + G
Sbjct: 1 MAQEYDYIIVGAGSAGNTLATRLTEDEGVTVLLLEAGGPDYRFDFRTQMPAALAFPLQGR 60
Query: 128 HLDWKYKTERNKYACLSTGGICEWPRGKMLAGTGAMTGMMYTRSHPSIYDEWQR-QGNPG 186
+W Y+T+ + G E RGK L G+ + GM Y R + YD W + G
Sbjct: 61 RYNWAYETDPEPHM---NGRRMECGRGKGLGGSSLINGMCYIRGNAMDYDGWAKLPGLED 117
Query: 187 WGFSDVLRYFIKSEHNLNRDQVDPEYHGYDGPLKVQR-FSSYPPIGEDIIKAGKELGYA- 244
W + D L YF K+E RD +YHG +GP+ V + P+ +++AG + GY
Sbjct: 118 WTYLDCLPYFRKAE---TRDIGPNDYHGGEGPVSVTTPKAGNNPLFHAMVEAGVQAGYPR 174
Query: 245 SGDFNGANQIGVN-FAQVMVDNGVRSSTPRMFLRDKYKQDNLKVQLNAHVMKLNIDPKTK 303
+ D NG Q G + + G R+ST R +L K+ L + +A K+ + K
Sbjct: 175 TEDLNGYQQEGFGPMDRTVTPKGRRASTARGYLDTAKKRSTLTIVTHALTDKILFE--GK 232
Query: 304 RALSVQFKDTNTNEIKTVKAKKEIILTAGAIGSPQLLMLSGVGPKSHLDELGIETISDL- 362
RA+ V + +T E +A+KE+I+++GAI SPQLL SGVGP++ L+ L I + DL
Sbjct: 233 RAVGVSYLQGSTEERVEARARKEVIVSSGAIASPQLLQRSGVGPRALLESLDIPVVHDLP 292
Query: 363 RVGYNLVHHVGANLKF------SILDNGVSDNNGEIDEK----GTYLEESNEGLSSMKGN 412
VG NL H+ L++ S+ + + N I + GT + SN+ +
Sbjct: 293 GVGENLQDHLELYLQYACTQPVSLYPSLLWWNQPAIGAEWLFNGTGIGASNQFEAGGFIR 352
Query: 413 MDEMLNDGRPGRSILSNTFNALFSNNNKEEDKMPCGRRSIYARPTNLLPISRGRLVLRSA 472
E L N SN KE A ++ SRGR+ L+S
Sbjct: 353 TREEFEWPNIQYHFLPVAINYNGSNGVKEH--------GFQAHMGSMRSPSRGRVQLKSK 404
Query: 473 DPFEYPKIHSNYLVMKQDIDVIIEGIRIIQKLTRTKALQKWDFQIDSTKMPECKHFEWDS 532
DP ++P I NY+ +QD +GIR+ +++ + AL + + S + E +
Sbjct: 405 DPRQHPSILFNYMATEQDWQEFRDGIRLTREIMQQPALDPFRGREISPGI------EVQT 458
Query: 533 NEYWECYIKTYTLPENHPGGTCKMGPADDYSSVVDAQLRIHGVPNLRVMDASIFPTNINS 592
+E + +++ + HP +CKMG D +VVD Q R+HG+ LRV+DASI P
Sbjct: 459 DEQLDKFVREHAETAFHPSCSCKMGTDD--MAVVDGQGRVHGMQGLRVVDASIMPIITTG 516
Query: 593 NPIATIIMIAEKGADMVK 610
N A IM+AEK AD ++
Sbjct: 517 NLNAPTIMMAEKIADKIR 534
>sp|Q2KB43|BETA_RHIEC Choline dehydrogenase OS=Rhizobium etli (strain CFN 42 / ATCC
51251) GN=betA PE=3 SV=1
Length = 549
Score = 215 bits (548), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 171/557 (30%), Positives = 262/557 (47%), Gaps = 55/557 (9%)
Query: 75 EYDFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGPDE--PTVTSVPGFAASAVGTHLDWK 132
+ DFV++G G AG +A RL E+ VL++EAG + P + A +W
Sbjct: 2 QADFVIIGSGSAGSALAYRLSEDGKNSVLVIEAGGSDFGPFIQMPAALAWPMSMKRYNWG 61
Query: 133 YKTERNKYACLSTGGICEWPRGKMLAGTGAMTGMMYTRSHPSIYDEWQRQGNPGWGFSDV 192
Y +E L+ I PRGK++ G+ ++ GM+Y R H ++ W+ G GW ++DV
Sbjct: 62 YLSEPEP--NLNNRRITA-PRGKVIGGSSSINGMVYVRGHAEDFNRWEELGASGWAYADV 118
Query: 193 LRYFIKSEHNLNRDQVDPEYHGYDGPLKVQRFSSYPPIGEDIIKAGKELGY-ASGDFNGA 251
L YF + EH+ ++ + G DGPL VQR P+ I+AGK+ G+ + D+NG+
Sbjct: 119 LPYFKRMEHSHGGEE---GWRGTDGPLHVQRGGFTNPLFRAFIEAGKQAGFETTEDYNGS 175
Query: 252 NQIGVNFAQVMVDNGVRSSTPRMFLRDKYKQDNLKVQLNAHVMKLNIDPKTKRALSVQFK 311
Q G + + G R S +L+ K+DN+ + + + I + RA V+ +
Sbjct: 176 KQEGFGLMEQTIFAGRRWSAANAYLKPALKRDNVGI---VYGLARRIVIENGRATGVEIE 232
Query: 312 DTNTNEIKTVKAKKEIILTAGAIGSPQLLMLSGVGPKSHLDELGIETISDLRVGYNLVHH 371
E+ VKA +E+I++A + SP+LLMLSG+GP HL E+GIE +D R G
Sbjct: 233 RGGRTEV--VKANREVIVSASSFNSPKLLMLSGIGPAKHLKEMGIEVKAD-RPG------ 283
Query: 372 VGANLKFSILDNGVSDNNGEIDEKGTYLEESNEGLSSMKGNMDEMLNDGRPGRSILSNTF 431
VGAN L + + ++ K L +L+ G G SN F
Sbjct: 284 VGAN-----LQDHMEFYFQQVSTKPVSLYSWLPWFWQGVAGAQWLLSKGGLG---ASNQF 335
Query: 432 NALFSNNNKEEDKMPC-------------GRRSIYARPTNL-----LPISRGRLVLRSAD 473
A + K P G+ + + + L SRG + LRS D
Sbjct: 336 EACAFLRSAPGLKQPDIQYHFLPVAISYDGKAAAKSHGFQVHVGYNLSKSRGSVTLRSPD 395
Query: 474 PFEYPKIHSNYLVMKQDIDVIIEGIRIIQKLTRTKALQKWDFQIDSTKMPECKHFEW-DS 532
P P + NY+ +D + +R+ +++ KA D+ + PE + E S
Sbjct: 396 PKADPVLRFNYMSHPEDWEKFRHCVRLTREIFGQKAF-------DAYRGPEIQPGEGVQS 448
Query: 533 NEYWECYIKTYTLPENHPGGTCKMGPADDYSSVVDAQLRIHGVPNLRVMDASIFPTNINS 592
+E + +++ + HP GTCKMG DD +VVD Q R+ GV LRV D+SIFP
Sbjct: 449 DEQIDSFLREHLESAYHPCGTCKMGAKDDPMAVVDPQTRVIGVDGLRVADSSIFPHVTYG 508
Query: 593 NPIATIIMIAEKGADMV 609
N IM EK AD +
Sbjct: 509 NLNGPSIMTGEKAADHI 525
>sp|A5WA97|BETA_PSEP1 Choline dehydrogenase OS=Pseudomonas putida (strain F1 / ATCC
700007) GN=betA PE=3 SV=1
Length = 565
Score = 214 bits (545), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 181/558 (32%), Positives = 273/558 (48%), Gaps = 43/558 (7%)
Query: 72 LQEEYDFVVVGGGVAGPVVAGRLVENPNWKVLLLEAG-PDE--PTVTSVPGFAASAV-GT 127
+ +E+D+++VG G AG +A RL E+ VLLLEAG PD T +P A + G
Sbjct: 1 MSQEFDYIIVGAGSAGNTLATRLTEDAGVTVLLLEAGGPDYRFDFRTQMPAALAFPLQGR 60
Query: 128 HLDWKYKTERNKYACLSTGGICEWPRGKMLAGTGAMTGMMYTRSHPSIYDEW-QRQGNPG 186
+W Y+T+ Y G E RGK L G+ + GM Y R + +D W + G
Sbjct: 61 RYNWAYETDPEPYM---DGRRMECGRGKGLGGSSLINGMCYIRGNAMDFDGWAELPGLED 117
Query: 187 WGFSDVLRYFIKSEHNLNRDQVDPEYHGYDGPLKVQR-FSSYPPIGEDIIKAGKELGYA- 244
W + D L YF K+E RD +YHG DGP+ V + P+ +++AG + GY
Sbjct: 118 WTYLDCLPYFRKAE---TRDIGPNDYHGGDGPVSVATPKAGNNPLFHAMVEAGVQAGYPR 174
Query: 245 SGDFNGANQIGVN-FAQVMVDNGVRSSTPRMFLRDKYKQDNLKVQLNAHVMKLNIDPKTK 303
+ D NG Q G + + NG RSST R +L K+ NL + +A ++ D K
Sbjct: 175 TEDLNGYQQEGFGPMDRSVTKNGRRSSTARGYLDQAKKRPNLTIVTHALTDRVLFD--GK 232
Query: 304 RALSVQFKDTNTNEIKTVKAKKEIILTAGAIGSPQLLMLSGVGPKSHLDELGIETISDL- 362
RA+ V + ++ E +A+KE+I+++GAI SPQLL SGVGP++ L+ L I + DL
Sbjct: 233 RAVGVTYLVGDSEERVEARARKEVIVSSGAIASPQLLQRSGVGPRALLESLDIPVVHDLP 292
Query: 363 RVGYNLVHHVGANLKF------SILDNGVSDNNGEIDEK----GTYLEESNEGLSSMKGN 412
VG NL H+ L++ S+ + + N I + GT + SN+ +
Sbjct: 293 GVGENLQDHLELYLQYACTQPVSLYPSLLWWNQPAIGAEWLFNGTGIGASNQFEAGGFIR 352
Query: 413 MDEMLNDGRPGRSILSNTFNALFSNNNKEEDKMPCGRRSIYARPTNLLPISRGRLVLRSA 472
L N SN KE A ++ +RGR+ +S
Sbjct: 353 TRPEFKWPNIQYHFLPVAINYNGSNGVKEH--------GFQAHMGSMRSPARGRIQAKSK 404
Query: 473 DPFEYPKIHSNYLVMKQDIDVIIEGIRIIQKLTRTKALQKWDFQIDSTKMPECKHFEWDS 532
DP ++P I NY+ +QD +GIR+ +++ AL + ++ H + D
Sbjct: 405 DPRQHPSILFNYMSTEQDWQEFRDGIRLTREIMAQPALDPY----RGREISPGAHVQTD- 459
Query: 533 NEYWECYIKTYTLPENHPGGTCKMGPADDYSSVVDAQLRIHGVPNLRVMDASIFPTNINS 592
E + +I+ + HP +CKMG D +VVD + R+HG+ LRV+DASI P I
Sbjct: 460 -EELDKFIREHAETAFHPSCSCKMGTDD--MAVVDGEGRVHGMKGLRVVDASIMPLIITG 516
Query: 593 NPIATIIMIAEKGADMVK 610
N AT IMIAEK +D ++
Sbjct: 517 NLNATTIMIAEKISDKIR 534
>sp|B1LIJ7|BETA_ECOSM Choline dehydrogenase OS=Escherichia coli (strain SMS-3-5 / SECEC)
GN=betA PE=3 SV=1
Length = 562
Score = 214 bits (545), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 183/557 (32%), Positives = 270/557 (48%), Gaps = 47/557 (8%)
Query: 75 EYDFVVVGGGVAGPVVAGRLVENPNWKVLLLEAG-PDE--PTVTSVPGFAASAV-GTHLD 130
++D++++G G AG V+A RL E+PN VLLLEAG PD T +P A + G +
Sbjct: 2 QFDYIIIGAGSAGNVLATRLTEDPNTTVLLLEAGGPDYRFDFRTQMPAALAFPLQGKRYN 61
Query: 131 WKYKTERNKYACLSTGGICEWPRGKMLAGTGAMTGMMYTRSHPSIYDEW-QRQGNPGWGF 189
W Y+TE + E RGK L G+ + GM Y R + D W Q G W +
Sbjct: 62 WAYETEPEPFM---NNRRMECGRGKGLGGSSLINGMCYIRGNALDLDNWAQEPGLENWSY 118
Query: 190 SDVLRYFIKSEHNLNRDQVDPEYHGYDGPLKVQRFSSYP---PIGEDIIKAGKELGYA-S 245
D L Y+ K+E RD + +YHG DGP+ V +S P P+ E +I+AG + GY +
Sbjct: 119 LDCLPYYRKAE---TRDVGENDYHGGDGPVSVT--TSKPGVNPLFEAMIEAGVQAGYPRT 173
Query: 246 GDFNGANQIGVN-FAQVMVDNGVRSSTPRMFLRDKYKQDNLKVQLNAHVMKLNIDPKTKR 304
D NG Q G + + +G R+ST R +L + NL ++ H M +I KR
Sbjct: 174 DDLNGYQQEGFGPMDRTVTPHGRRASTARGYLDQAKSRSNLTIR--THAMTDHIIFDGKR 231
Query: 305 ALSVQFKDTNTNEIKTVKAKKEIILTAGAIGSPQLLMLSGVGPKSHLDELGIETISDL-R 363
A+ V++ + ++ A KE++L AGAI SPQ+L SGVG L E I + +L
Sbjct: 232 AVGVEWLEGDSTIPTRAAANKEVLLCAGAIASPQILQRSGVGNAGLLAEFDIPLVHELPG 291
Query: 364 VGYNLVHHVGANLKF------SILDNGVSDNNGEIDEK----GTYLEESNEGLSSMKGNM 413
VG NL H+ L++ S+ N +I + GT + SN +
Sbjct: 292 VGENLQDHLEMYLQYECKEPVSLYPALQWWNQPKIGAEWLFGGTGIGASNHFEAGGFIRS 351
Query: 414 DEMLNDGRPGRSILSNTFNALFSNNNKEEDKMPCGRRSIYARPTNLLPISRGRLVLRSAD 473
E L N SN KE ++ SRG + ++S
Sbjct: 352 REEFAWPNIQYHFLPVAINYNGSNAVKEH--------GFQCHVGSMRSPSRGHVRIKSRA 403
Query: 474 PFEYPKIHSNYLVMKQDIDVIIEGIRIIQKLTRTKALQKWDFQIDSTKMPECKHFEWDSN 533
P ++P I NY+ +QD + IRI +++ AL ++ + S + EC+ ++
Sbjct: 404 PHQHPAILFNYMSHEQDWQEFRDAIRITREIMHQPALDQYHGREISPGV-ECQ-----TD 457
Query: 534 EYWECYIKTYTLPENHPGGTCKMGPADDYSSVVDAQLRIHGVPNLRVMDASIFPTNINSN 593
E + +++ + HP GTCKMG D SVVD + R+HG+ LRV+DASI P I N
Sbjct: 458 EQLDEFVRNHAETAFHPCGTCKMG--YDEMSVVDGEGRVHGLEGLRVVDASIMPQIITGN 515
Query: 594 PIATIIMIAEKGADMVK 610
AT IMI EK ADM++
Sbjct: 516 LNATTIMIGEKMADMIR 532
>sp|B0CKN4|BETA_BRUSI Choline dehydrogenase OS=Brucella suis (strain ATCC 23445 / NCTC
10510) GN=betA PE=3 SV=1
Length = 549
Score = 214 bits (545), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 163/564 (28%), Positives = 267/564 (47%), Gaps = 69/564 (12%)
Query: 75 EYDFVVVGGGVAGPVVAGRLVENPNWKVLLLEAG-PDEPTVTSVPGFAASAVGTH-LDWK 132
E DFV++G G AG +A RL E+ + V+++E G PD + +P + + DW
Sbjct: 2 EADFVIIGSGSAGSAMAYRLSEDGRYSVIVIEYGVPDVGPLIQMPAALSFPMNMETYDWG 61
Query: 133 YKTERNKYACLSTGGICEWPRGKMLAGTGAMTGMMYTRSHPSIYDEWQRQGNPGWGFSDV 192
+ +E + G PRGK+L G+ ++ GM+Y R H +D W + G GW ++DV
Sbjct: 62 FSSEPEPHI---GGRSLVTPRGKVLGGSSSINGMVYVRGHACDFDHWSQSGARGWAYADV 118
Query: 193 LRYFIKSEHNLNRDQVDPEYHGYDGPLKVQRFSSYPPIGEDIIKAGKELGY-ASGDFNGA 251
L YF + E++ + + G +GPL VQR P+ ++AG + G+ + D+NG
Sbjct: 119 LPYFKRMENSQGGQE---GWRGTNGPLYVQRGKRDNPLFHAFVEAGHQAGFEVTDDYNGE 175
Query: 252 NQIGVNFAQVMVDNGVRSSTPRMFLRDKYKQDNLKVQLNAHVMKLNIDPKTKRALSVQFK 311
Q G + + NG R S +L+ K+ N+K+ + K+ ++ KRA+ V+ +
Sbjct: 176 KQEGFGPMEQTIHNGRRWSAANAYLKPALKRPNVKL-VKGFARKIVLE--GKRAVGVEIE 232
Query: 312 DTNTNEIKTVKAKKEIILTAGAIGSPQLLMLSGVGPKSHLDELGIETISDLRVGYNLVHH 371
T T++A++E+I+ A +I SP+LLMLSG+GP +HL E GI+ ++D R G
Sbjct: 233 AGRT--FSTIRARREVIIAASSINSPKLLMLSGIGPAAHLKEHGIDLVAD-RPG------ 283
Query: 372 VGANLKFSILDNGVSDNNGEIDEKGTYLEESNEGLSSMKGNMDEMLNDGRPGRSIL---- 427
VG NL+ D Y+++ ++ ++ + + R G L
Sbjct: 284 VGQNLQ---------------DHLEVYIQQECTQPITLYSKLN-LFSKARIGVEWLLFKT 327
Query: 428 ----SNTF-NALFSNNN-----------------KEEDKMPCGRRSIYARPTNLLPISRG 465
+N F +A F + + + K A + SRG
Sbjct: 328 GDGATNHFESAAFVRSKAGVEYPDIQYHFLPVAIRYDGKAAAQSHGFQAHVGPMRSKSRG 387
Query: 466 RLVLRSADPFEYPKIHSNYLVMKQDIDVIIEGIRIIQKLTRTKALQKWDFQIDSTKMPEC 525
+ LRSA+P E P I NY+ + D +R+ +++ A + ++
Sbjct: 388 SVTLRSANPREKPVIKFNYMSHEDDWADFRHCVRLTREIFGQAAFDPYR----GAEIQPG 443
Query: 526 KHFEWDSNEYWECYIKTYTLPENHPGGTCKMGPADDYSSVVDAQLRIHGVPNLRVMDASI 585
H + D + +I+ + HP GTCKMG DD +VVD + R+ GV LRV D+SI
Sbjct: 444 AHVQTDDE--IDNFIREHVESAFHPCGTCKMGAVDDPMAVVDPECRVIGVEGLRVADSSI 501
Query: 586 FPTNINSNPIATIIMIAEKGADMV 609
FP N N IM+ EK +D +
Sbjct: 502 FPRITNGNLNGPSIMVGEKASDHI 525
>sp|A5VPA6|BETA_BRUO2 Choline dehydrogenase OS=Brucella ovis (strain ATCC 25840 / 63/290
/ NCTC 10512) GN=betA PE=3 SV=1
Length = 549
Score = 214 bits (545), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 163/564 (28%), Positives = 267/564 (47%), Gaps = 69/564 (12%)
Query: 75 EYDFVVVGGGVAGPVVAGRLVENPNWKVLLLEAG-PDEPTVTSVPGFAASAVGTH-LDWK 132
E DFV++G G AG +A RL E+ + V+++E G PD + +P + + DW
Sbjct: 2 EADFVIIGSGSAGSAMAYRLSEDGRYSVIVIEYGVPDVGPLIQMPAALSFPMNMETYDWG 61
Query: 133 YKTERNKYACLSTGGICEWPRGKMLAGTGAMTGMMYTRSHPSIYDEWQRQGNPGWGFSDV 192
+ +E + G PRGK+L G+ ++ GM+Y R H +D W + G GW ++DV
Sbjct: 62 FSSEPEPHI---GGRSLVTPRGKVLGGSSSINGMVYVRGHACDFDHWSQSGARGWAYADV 118
Query: 193 LRYFIKSEHNLNRDQVDPEYHGYDGPLKVQRFSSYPPIGEDIIKAGKELGY-ASGDFNGA 251
L YF + E++ + + G +GPL VQR P+ ++AG + G+ + D+NG
Sbjct: 119 LPYFKRMENSQGGQE---GWRGTNGPLYVQRGKRDNPLFHAFVEAGHQAGFEVTDDYNGE 175
Query: 252 NQIGVNFAQVMVDNGVRSSTPRMFLRDKYKQDNLKVQLNAHVMKLNIDPKTKRALSVQFK 311
Q G + + NG R S +L+ K+ N+K+ + K+ ++ KRA+ V+ +
Sbjct: 176 KQEGFGPMEQTIHNGRRWSAANAYLKPALKRPNVKL-VKGFARKIVLE--GKRAVGVEIE 232
Query: 312 DTNTNEIKTVKAKKEIILTAGAIGSPQLLMLSGVGPKSHLDELGIETISDLRVGYNLVHH 371
T T++A++E+I+ A +I SP+LLMLSG+GP +HL E GI+ ++D R G
Sbjct: 233 AGRT--FSTIRARREVIIAASSINSPKLLMLSGIGPAAHLKEHGIDLVAD-RPG------ 283
Query: 372 VGANLKFSILDNGVSDNNGEIDEKGTYLEESNEGLSSMKGNMDEMLNDGRPGRSIL---- 427
VG NL+ D Y+++ ++ ++ + + R G L
Sbjct: 284 VGQNLQ---------------DHLEVYIQQECTQPITLYSKLN-LFSKARIGVEWLLFKT 327
Query: 428 ----SNTF-NALFSNNN-----------------KEEDKMPCGRRSIYARPTNLLPISRG 465
+N F +A F + + + K A + SRG
Sbjct: 328 GDGATNHFESAAFVRSKAGVEYPDIQYHFLPVAIRYDGKAAAQSHGFQAHVGPMRSKSRG 387
Query: 466 RLVLRSADPFEYPKIHSNYLVMKQDIDVIIEGIRIIQKLTRTKALQKWDFQIDSTKMPEC 525
+ LRSA+P E P I NY+ + D +R+ +++ A + ++
Sbjct: 388 SVTLRSANPREKPVIKFNYMSHEDDWADFRHCVRLTREIFGQAAFDPYR----GAEIQPG 443
Query: 526 KHFEWDSNEYWECYIKTYTLPENHPGGTCKMGPADDYSSVVDAQLRIHGVPNLRVMDASI 585
H + D + +I+ + HP GTCKMG DD +VVD + R+ GV LRV D+SI
Sbjct: 444 AHVQTDDE--IDNFIREHVESAFHPCGTCKMGAVDDPMAVVDPECRVIGVEGLRVADSSI 501
Query: 586 FPTNINSNPIATIIMIAEKGADMV 609
FP N N IM+ EK +D +
Sbjct: 502 FPRITNGNLNGPSIMVGEKASDHI 525
>sp|Q48CM7|BETA_PSE14 Choline dehydrogenase OS=Pseudomonas syringae pv. phaseolicola
(strain 1448A / Race 6) GN=betA PE=3 SV=1
Length = 568
Score = 214 bits (544), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 178/557 (31%), Positives = 271/557 (48%), Gaps = 43/557 (7%)
Query: 73 QEEYDFVVVGGGVAGPVVAGRLVENPNWKVLLLEAG-PDEPT--VTSVPGFAASAV-GTH 128
Q EYD++++G G AG +A RL E+ VLLLEAG PD T +P A + G
Sbjct: 4 QSEYDYIIIGAGSAGNTLAARLTEDAGVTVLLLEAGGPDYRLDFRTQMPAALAFPLQGRR 63
Query: 129 LDWKYKTERNKYACLSTGGICEWPRGKMLAGTGAMTGMMYTRSHPSIYDEWQRQ-GNPGW 187
+W Y+TE + E RGK L G+ + GM Y R + YD W ++ G W
Sbjct: 64 YNWAYETEPEPHM---NNRRMECGRGKGLGGSSLINGMCYIRGNAMDYDGWAKEPGLEDW 120
Query: 188 GFSDVLRYFIKSEHNLNRDQVDPEYHGYDGPLKVQR-FSSYPPIGEDIIKAGKELGYA-S 245
+ D L YF K+E RD +YHG +GP+ V + + P+ +++AG + G+ +
Sbjct: 121 SYLDCLPYFRKAE---TRDIGPNDYHGGEGPVSVTKPKAGNNPLFHAMVEAGVQAGFPRT 177
Query: 246 GDFNGANQIGVN-FAQVMVDNGVRSSTPRMFLRDKYKQDNLKVQLNAHVMKLNIDPKTKR 304
D NG Q G + + NG R+ST R +L + K+ L + H + I + KR
Sbjct: 178 DDLNGYQQEGFGPMDRTVTPNGRRASTARGYLDEAKKRSTLTIV--THALTDRILFEGKR 235
Query: 305 ALSVQFKDTNTNEIKTVKAKKEIILTAGAIGSPQLLMLSGVGPKSHLDELGIETISDL-R 363
A+ V + +++ +A+KE++L GAI SPQ+L SGVGP L++L I + DL
Sbjct: 236 AVGVAYLVGDSDTRIQARARKEVLLCGGAIASPQILQRSGVGPAEVLNKLDIPVVHDLPG 295
Query: 364 VGYNLVHHVGANLKF------SILDNGVSDNNGEIDEKGTYLEESNEGLSSMKGNMDEML 417
VG NL H+ L++ S+ + N I K +L G N E
Sbjct: 296 VGQNLQDHLEMYLQYACTQPVSLYPSLKWWNQPAIGAKWMFL-----GTGIGASNQFEAG 350
Query: 418 NDGRPGRSI----LSNTFNALFSNNNKEEDKMPCGRRSIYARPTNLLPISRGRLVLRSAD 473
R + + F + N N + G A ++ SRGR+ ++S D
Sbjct: 351 GFIRSSEAFEWPNIQYHFLPVAINYNGTKGVQEHG---FQAHVGSMRSPSRGRVQVKSKD 407
Query: 474 PFEYPKIHSNYLVMKQDIDVIIEGIRIIQKLTRTKALQKWDFQIDSTKMPECKHFEWDSN 533
P EYP I NY+ +QD +GIR+ +++ + AL + + S + + S+
Sbjct: 408 PREYPSILFNYMSSEQDWQEFRDGIRLTREIMQQPALDPYRGREISPGI------DVQSD 461
Query: 534 EYWECYIKTYTLPENHPGGTCKMGPADDYSSVVDAQLRIHGVPNLRVMDASIFPTNINSN 593
E + +++ + HP +CKMG D +VVD Q R+HG+ +LRV+DASI P N
Sbjct: 462 EALDQFVREHAETAYHPSCSCKMG--TDEMAVVDGQGRVHGLQSLRVVDASIMPIITTGN 519
Query: 594 PIATIIMIAEKGADMVK 610
A IMIAEK AD ++
Sbjct: 520 LNAPTIMIAEKIADKIR 536
>sp|Q88AE7|BETA_PSESM Choline dehydrogenase OS=Pseudomonas syringae pv. tomato (strain
DC3000) GN=betA PE=3 SV=1
Length = 568
Score = 213 bits (543), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 179/557 (32%), Positives = 270/557 (48%), Gaps = 43/557 (7%)
Query: 73 QEEYDFVVVGGGVAGPVVAGRLVENPNWKVLLLEAG-PDEPT--VTSVPGFAASAV-GTH 128
Q EYD++++G G AG +A RL E+ VLLLEAG PD T +P A + G
Sbjct: 4 QSEYDYIIIGAGSAGNTLAARLTEDAGVTVLLLEAGGPDYRLDFRTQMPAALAFPLQGRR 63
Query: 129 LDWKYKTERNKYACLSTGGICEWPRGKMLAGTGAMTGMMYTRSHPSIYDEWQRQ-GNPGW 187
+W Y+TE + E RGK L G+ + GM Y R + YD W ++ G W
Sbjct: 64 YNWAYETEPEPHM---DNRRMECGRGKGLGGSSLINGMCYIRGNAMDYDGWAKEPGLEDW 120
Query: 188 GFSDVLRYFIKSEHNLNRDQVDPEYHGYDGPLKVQR-FSSYPPIGEDIIKAGKELGYA-S 245
+ D L YF K+E RD +YHG +GP+ V + P+ +++AG + G+ +
Sbjct: 121 SYLDCLPYFRKAE---TRDIGPNDYHGGEGPVSVTTPKAGNNPLFHAMVEAGVQAGFPRT 177
Query: 246 GDFNGANQIGVN-FAQVMVDNGVRSSTPRMFLRDKYKQDNLKVQLNAHVMKLNIDPKTKR 304
D NG Q G + + G R+ST R +L + K+D L + H + I + KR
Sbjct: 178 DDLNGYQQEGFGPMDRTVTPKGRRASTARGYLDEAKKRDTLSIV--THALTDRILFEGKR 235
Query: 305 ALSVQFKDTNTNEIKTVKAKKEIILTAGAIGSPQLLMLSGVGPKSHLDELGIETISDL-R 363
A+ V + +++ V+A+KE++L GAI SPQ+L SGVGP L++L I + DL
Sbjct: 236 AVGVAYLVGDSDTRIEVRARKEVLLCGGAIASPQILQRSGVGPAEVLNKLDIPVVHDLPG 295
Query: 364 VGYNLVHHVGANLKF------SILDNGVSDNNGEIDEKGTYLEESNEGLSSMKGNMDEML 417
VG NL H+ L++ S+ + N I + +L G N E
Sbjct: 296 VGQNLQDHLEMYLQYACTQPVSLYPSLKWWNQPAIGAEWMFL-----GTGIGASNQFEAG 350
Query: 418 NDGRPGRSI----LSNTFNALFSNNNKEEDKMPCGRRSIYARPTNLLPISRGRLVLRSAD 473
R + + F + N N + G A ++ SRGR+ ++S D
Sbjct: 351 GFIRSSEAFEWPNIQYHFLPVAINYNGTKGVQEHG---FQAHVGSMRSPSRGRVHVKSKD 407
Query: 474 PFEYPKIHSNYLVMKQDIDVIIEGIRIIQKLTRTKALQKWDFQIDSTKMPECKHFEWDSN 533
P EYP I NY+ QD +GIR+ +++ + AL + + S + + S+
Sbjct: 408 PREYPSILFNYMASDQDWQEFRDGIRLTREIMQQPALDPYRGREISPGI------DVQSD 461
Query: 534 EYWECYIKTYTLPENHPGGTCKMGPADDYSSVVDAQLRIHGVPNLRVMDASIFPTNINSN 593
E + +++ + HP +CKMG D +VVD Q R+HG+ NLRV+DASI P N
Sbjct: 462 EALDQFVREHAETAYHPSCSCKMG--TDEMAVVDGQGRVHGMQNLRVVDASIMPIITTGN 519
Query: 594 PIATIIMIAEKGADMVK 610
A IMIAEK AD ++
Sbjct: 520 LNAPTIMIAEKIADKIR 536
>sp|Q88CW6|BETA_PSEPK Choline dehydrogenase OS=Pseudomonas putida (strain KT2440) GN=betA
PE=3 SV=1
Length = 565
Score = 213 bits (543), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 179/558 (32%), Positives = 271/558 (48%), Gaps = 43/558 (7%)
Query: 72 LQEEYDFVVVGGGVAGPVVAGRLVENPNWKVLLLEAG-PDE--PTVTSVPGFAASAV-GT 127
+ +E+D+++VG G AG +A RL E+ VLLLEAG PD T +P A + G
Sbjct: 1 MSQEFDYIIVGAGSAGNTLATRLTEDAGVTVLLLEAGGPDYRFDFRTQMPAALAFPLQGR 60
Query: 128 HLDWKYKTERNKYACLSTGGICEWPRGKMLAGTGAMTGMMYTRSHPSIYDEW-QRQGNPG 186
+W Y+T+ Y G E RGK L G+ + GM Y R + +D W + G
Sbjct: 61 RYNWAYETDPEPYM---DGRRMECGRGKGLGGSSLINGMCYIRGNAMDFDGWAELPGLED 117
Query: 187 WGFSDVLRYFIKSEHNLNRDQVDPEYHGYDGPLKVQR-FSSYPPIGEDIIKAGKELGYA- 244
W + D L YF K+E RD +YHG +GP+ V + P+ +++AG + GY
Sbjct: 118 WTYLDCLPYFRKAE---TRDIGPNDYHGGEGPVSVTTPKAGNNPLFHAMVEAGVQAGYPR 174
Query: 245 SGDFNGANQIGVN-FAQVMVDNGVRSSTPRMFLRDKYKQDNLKVQLNAHVMKLNIDPKTK 303
+ D NG Q G + + NG RSST R +L K+ NL + +A ++ D K
Sbjct: 175 TEDLNGYQQEGFGPMDRTVTKNGRRSSTARGYLDQAKKRPNLTIVTHALTDRVLFD--GK 232
Query: 304 RALSVQFKDTNTNEIKTVKAKKEIILTAGAIGSPQLLMLSGVGPKSHLDELGIETISDL- 362
RA+ V + ++ E +A+KE+I+++GAI SPQLL SGVGP++ L+ L I + DL
Sbjct: 233 RAIGVTYLVGDSEERVEARARKEVIVSSGAIASPQLLQRSGVGPRALLESLDIPVVHDLP 292
Query: 363 RVGYNLVHHVGANLKF----------SILDNGVSDNNGEIDEKGTYLEESNEGLSSMKGN 412
VG NL H+ L++ S+L E GT + SN+ +
Sbjct: 293 GVGENLQDHLELYLQYACTQPVSLYPSLLWWNQPAIGAEWMFNGTGIGASNQFEAGGFIR 352
Query: 413 MDEMLNDGRPGRSILSNTFNALFSNNNKEEDKMPCGRRSIYARPTNLLPISRGRLVLRSA 472
L N SN KE A ++ +RGR+ ++S
Sbjct: 353 TRPEFKWPNIQYHFLPVAINYNGSNGVKEH--------GFQAHMGSMRSPARGRIQVKSK 404
Query: 473 DPFEYPKIHSNYLVMKQDIDVIIEGIRIIQKLTRTKALQKWDFQIDSTKMPECKHFEWDS 532
DP ++P I NY+ +QD +GIR+ +++ AL + + S + +
Sbjct: 405 DPRQHPSILFNYMSTEQDWQEFRDGIRLTREIMAQPALDPYRGREISPGA------DVQT 458
Query: 533 NEYWECYIKTYTLPENHPGGTCKMGPADDYSSVVDAQLRIHGVPNLRVMDASIFPTNINS 592
+E + +I+ + HP +CKMG D +VVD + R+HG+ LRV+DASI P I
Sbjct: 459 DEQLDKFIREHAETAFHPSCSCKMGTDD--MAVVDGEGRVHGMKGLRVVDASIMPLIITG 516
Query: 593 NPIATIIMIAEKGADMVK 610
N AT IMIAEK +D ++
Sbjct: 517 NLNATTIMIAEKISDKIR 534
>sp|Q1QXE1|BETA1_CHRSD Choline dehydrogenase OS=Chromohalobacter salexigens (strain DSM
3043 / ATCC BAA-138 / NCIMB 13768) GN=betA PE=3 SV=1
Length = 560
Score = 213 bits (543), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 174/555 (31%), Positives = 268/555 (48%), Gaps = 43/555 (7%)
Query: 75 EYDFVVVGGGVAGPVVAGRLVENPNWKVLLLEAG-PDE--PTVTSVPGFAASAV-GTHLD 130
EYD++++G G AG V+A RL E+P+ +VLLLEAG PD T +P A + G +
Sbjct: 6 EYDYIIIGAGSAGNVLATRLTEDPDVQVLLLEAGGPDYRFDFRTQMPAALAYPLQGKRYN 65
Query: 131 WKYKTERNKYACLSTGGICEWPRGKMLAGTGAMTGMMYTRSHPSIYDEWQR-QGNPGWGF 189
W ++T+ Y E RGK L G+ + GM Y R + YD W + G W +
Sbjct: 66 WAFETDPEPYM---NNRRMECGRGKGLGGSSLINGMCYLRGNALDYDNWAKIPGLEDWNY 122
Query: 190 SDVLRYFIKSEHNLNRDQVDPEYHGYDGPLKVQRFSSYPPIGED-----IIKAGKELGY- 243
L YF ++E RD +YHG DGP+ V + P G + I+AG E GY
Sbjct: 123 LQCLPYFKRAE---TRDIGPNDYHGGDGPVSV----ATPKEGNNELYGAFIRAGIEAGYP 175
Query: 244 ASGDFNGANQIGVN-FAQVMVDNGVRSSTPRMFLRDKYKQDNLKVQLNAHVMKLNIDPKT 302
A+ D NG Q G + NG R+ST R +L ++ NL ++ H I+ +
Sbjct: 176 ATEDVNGYQQEGFGPMDRTTTPNGRRASTARGYLDIAKQRPNLTIE--THATTDVIEFEG 233
Query: 303 KRALSVQFKDTNTNEIKTVKAKKEIILTAGAIGSPQLLMLSGVGPKSHLDELGIETISDL 362
KRA+ V ++ + + V+A++E++L AGAI SPQ+L SGVG HL+E I + +L
Sbjct: 234 KRAVGVSYE--RKGQAQRVRARREVLLCAGAIASPQILQRSGVGNPEHLEEFDIPVVHEL 291
Query: 363 -RVGYNLVHHVGANLKF------SILDNGVSDNNGEIDEKGTYLEESNEGLSSMKGNMDE 415
VG NL H+ +++ S+ N +I + + + + +
Sbjct: 292 PGVGENLQDHLEMYIQYECKKPISLYPALKWYNQPKIGAEWLFFGKGIGASNQFEAAGFI 351
Query: 416 MLNDGRPGRSILSNTFNALFSNNNKEEDKMPCGRRSIYARPTNLLPISRGRLVLRSADPF 475
ND ++ + S N K + A ++ +SRGR+ L S DP
Sbjct: 352 RTNDQEEWPNLQYHFLPIAISYNGKSAVQA----HGFQAHVGSMRSMSRGRIRLTSRDPK 407
Query: 476 EYPKIHSNYLVMKQDIDVIIEGIRIIQKLTRTKALQKWDFQIDSTKMPECKHFEWDSNEY 535
P I NY+ +D + IRI +++ + ++ + + + P + S+
Sbjct: 408 AAPSILFNYMSHDKDWQEFRDAIRITREIIEQPTMDEYRGR-EISPGPNVQ-----SDAE 461
Query: 536 WECYIKTYTLPENHPGGTCKMGPADDYSSVVDAQLRIHGVPNLRVMDASIFPTNINSNPI 595
+ +++ + HP G+CKMG ADD +VVD R+HG+ LRV+DASI P N
Sbjct: 462 LDEFVRQHAETAYHPAGSCKMGSADDAMAVVDGAGRVHGLEGLRVIDASIMPVIATGNLN 521
Query: 596 ATIIMIAEKGADMVK 610
A IMIAEK AD V+
Sbjct: 522 APTIMIAEKMADKVR 536
>sp|Q8PPG8|BETA_XANAC Choline dehydrogenase OS=Xanthomonas axonopodis pv. citri (strain
306) GN=betA PE=3 SV=1
Length = 556
Score = 213 bits (543), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 181/562 (32%), Positives = 267/562 (47%), Gaps = 51/562 (9%)
Query: 72 LQEEYDFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGPDEPTV---TSVPGFAASAV-GT 127
+Q EYD++++G G AG V+A RL E+P VLLLEAG + V T +P A + G
Sbjct: 1 MQREYDYIIIGAGSAGNVLAARLTEDPGVTVLLLEAGGPDYRVDFRTQMPAALAFPLQGR 60
Query: 128 HLDWKYKTERNKYACLSTGGICEWPRGKMLAGTGAMTGMMYTRSHPSIYDEW-QRQGNPG 186
+W Y+TE Y E RGK L G+ + GM Y R + +D W +R G
Sbjct: 61 RYNWAYETEPEPYM---DNRRMECGRGKGLGGSSLINGMCYIRGNALDFDHWAKRPGLED 117
Query: 187 WGFSDVLRYFIKSEHNLNRDQVDPEYHGYDGPLKVQRFSSYPP-----IGEDIIKAGKEL 241
W + DVL YF K+E RD +YHG DGP+ V + P + +++AG +
Sbjct: 118 WSYRDVLPYFRKAE---TRDIGANDYHGGDGPVSV----ATPKNDNNVLFHAMVEAGVQA 170
Query: 242 GYA-SGDFNGANQIGVN-FAQVMVDNGVRSSTPRMFLRDKYKQDNLKVQLNAHVMKLNID 299
GY +GD NG Q G + + G R+ST R +L +D L + +A ++
Sbjct: 171 GYPRTGDLNGYQQEGFGPMDRTVTPRGRRASTARGYLDMAKPRDGLHIVTHATTDRILF- 229
Query: 300 PKTKRALSVQFKDTNTNEIKTVKAKKEIILTAGAIGSPQLLMLSGVGPKSHLDELGIETI 359
KRA+ V + N++E A++E+++ AGAI SPQLL SGVG L L ++ +
Sbjct: 230 -AGKRAIGVHYLVGNSSEGIDAHARREVLVCAGAIASPQLLQRSGVGAPDLLRALDVQLV 288
Query: 360 SDL-RVGYNLVHHVGANLKF------SILDNGVSDNNGEIDEK----GTYLEESNEGLSS 408
DL VG NL H+ +++ S+ N I + GT SN+ +
Sbjct: 289 HDLPGVGQNLQDHLEVYIQYACTKPVSLYPALQWWNQPAIGAQWLFAGTGTGASNQFEAG 348
Query: 409 MKGNMDEMLNDGRPGRSILSNTFNALFSNNNKEEDKMPCGRRSIYARPTNLLPISRGRLV 468
E + L N SN KE A ++ SRGR+
Sbjct: 349 GFIRTREEFDWPNIQYHFLPVAINYNGSNAVKEH--------GFQAHVGSMRTPSRGRVH 400
Query: 469 LRSADPFEYPKIHSNYLVMKQDIDVIIEGIRIIQKLTRTKALQKWDFQIDSTKMPECKHF 528
+S DP ++P I NY QD + IRI +++ AL + + + + +CK
Sbjct: 401 AKSRDPRQHPSILFNYQSTDQDWQEFRDAIRITREIIAQPALDAYRGR-EISPSADCK-- 457
Query: 529 EWDSNEYWECYIKTYTLPENHPGGTCKMGPADDYSSVVDAQLRIHGVPNLRVMDASIFPT 588
++ + ++++ HP +C MG D +VVD Q R+HG+ LRV+DASI P
Sbjct: 458 ---TDAELDAFVRSRAETAYHPSCSCAMG--TDAMAVVDGQGRVHGMEGLRVIDASIMPR 512
Query: 589 NINSNPIATIIMIAEKGADMVK 610
I N AT IMIAEK AD V+
Sbjct: 513 IITGNLNATTIMIAEKIADRVR 534
>sp|C6DKY4|BETA_PECCP Choline dehydrogenase OS=Pectobacterium carotovorum subsp.
carotovorum (strain PC1) GN=betA PE=3 SV=1
Length = 559
Score = 213 bits (541), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 184/559 (32%), Positives = 270/559 (48%), Gaps = 53/559 (9%)
Query: 75 EYDFVVVGGGVAGPVVAGRLVENPNWKVLLLEAG-PDEPT--VTSVPGFAASAV-GTHLD 130
EYD++++G G AG V+A RL E + VLLLEAG PD T +P A + G +
Sbjct: 2 EYDYIIIGAGSAGNVLATRLTEESDVSVLLLEAGGPDYRLDFRTQMPAALAFPLQGKRYN 61
Query: 131 WKYKTERNKYACLSTGGICEWPRGKMLAGTGAMTGMMYTRSHPSIYDEWQRQ-GNPGWGF 189
W Y+T+ + E RGK L G+ + GM Y R + +D W G W +
Sbjct: 62 WAYETDPEPHM---NNRRMECGRGKGLGGSSLINGMCYIRGNAMDFDNWATMPGLEDWSY 118
Query: 190 SDVLRYFIKSEHNLNRDQVDPEYHGYDGPLKVQRFSSYPPIGED-----IIKAGKELGYA 244
D L YF K+E RD +YHG GP+ V + P +G + +++AG + GY
Sbjct: 119 LDCLPYFRKAE---TRDVGSNDYHGATGPVSV----ATPKMGNNELFHAMVEAGVQAGYP 171
Query: 245 -SGDFNGANQIGVN-FAQVMVDNGVRSSTPRMFLRDKYKQDNLKVQLNAHVMKLNIDPKT 302
+ D NG Q G + + G R+ST R +L + NL + H + I +
Sbjct: 172 RTDDLNGYQQEGFGPMDRTVTPKGRRASTARGYLDQAKGRKNLTIV--THALTDKILFEG 229
Query: 303 KRALSVQFKDTNTNEIKTVKAKKEIILTAGAIGSPQLLMLSGVGPKSHLDELGIETISDL 362
KRA+ V + + + TV+A++E++L AGAI SPQ+L SGVGPK L L I + DL
Sbjct: 230 KRAVGVAYFKGESPQ--TVQARREVLLCAGAIASPQILQRSGVGPKDLLQGLDIPVVHDL 287
Query: 363 -RVGYNLVHHVGANLKF------SILDNGVSDNNGEIDEK----GTYLEESNEGLSSMKG 411
VG NL H+ L++ S+ N +I + GT + SN+ +
Sbjct: 288 PGVGENLQDHLEMYLQYACKEPVSLYPALQWFNQPKIGAEWLFSGTGIGASNQFEAGGFI 347
Query: 412 NMDEMLNDGRPGRSILSNTFNALFSNNNKEEDKMPCGRRSIYARPTNLLPISRGRLVLRS 471
+ L N SN KE A ++ +SRGR+ +RS
Sbjct: 348 RSRDEFAWPNIQYHFLPVAINYNGSNAVKEH--------GFQAHVGSMRSLSRGRVQVRS 399
Query: 472 ADPFEYPKIHSNYLVMKQDIDVIIEGIRIIQKLTRTKALQKWDFQIDSTKMPECKHFEWD 531
D E+P I NY+ +QD + IRI +++ AL K+ + S + E
Sbjct: 400 KDAREHPSILFNYMSTEQDWQEFRDAIRITREIMAQPALDKYRGREISPGL------EVQ 453
Query: 532 SNEYWECYIKTYTLPENHPGGTCKMGPADDYSSVVDAQLRIHGVPNLRVMDASIFPTNIN 591
++E + +I+T+ HP +CKMG +D +VVD Q R+HG+ LRV+DASI P I
Sbjct: 454 TDEELDEFIRTHAETAFHPSCSCKMG--EDEMAVVDGQGRVHGMEGLRVVDASIMPQIIT 511
Query: 592 SNPIATIIMIAEKGADMVK 610
N AT IMIAEK AD ++
Sbjct: 512 GNLNATTIMIAEKIADRIR 530
>sp|Q6D6D9|BETA_ERWCT Choline dehydrogenase OS=Erwinia carotovora subsp. atroseptica
(strain SCRI 1043 / ATCC BAA-672) GN=betA PE=3 SV=1
Length = 559
Score = 213 bits (541), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 180/567 (31%), Positives = 269/567 (47%), Gaps = 69/567 (12%)
Query: 75 EYDFVVVGGGVAGPVVAGRLVENPNWKVLLLEAG-PDEPT--VTSVPGFAASAV-GTHLD 130
EYD++++G G AG V+A RL E + VLLLEAG PD T +P A + G +
Sbjct: 2 EYDYIIIGAGSAGNVLAARLTEESDVSVLLLEAGGPDYRLDFRTQMPAALAFPLQGKRYN 61
Query: 131 WKYKTERNKYACLSTGGICEWPRGKMLAGTGAMTGMMYTRSHPSIYDEWQR-QGNPGWGF 189
W Y+T+ + E RGK L G+ + GM Y R + +D W G W +
Sbjct: 62 WAYETDPEPHM---NDRRMECGRGKGLGGSSLINGMCYIRGNAMDFDHWATMSGLEDWSY 118
Query: 190 SDVLRYFIKSEHNLNRDQVDPEYHGYDGPLKVQRFSSYPPIGED-----IIKAGKELGYA 244
D L YF K+E RD +YHG GP+ V + P +G + +++AG + GY
Sbjct: 119 LDCLPYFRKAE---TRDVGANDYHGASGPVSV----TTPKMGNNELFHAMVEAGVQAGYP 171
Query: 245 -SGDFNGANQIGVN-FAQVMVDNGVRSSTPRMFLRDKYKQDNLKVQLNAHVMKLNIDPKT 302
+ D NG Q G + + G R+ST R +L + NL + +A ++ D
Sbjct: 172 RTDDLNGYQQEGFGPMDRTVTPKGRRASTARGYLDQAKSRKNLTIVTHALTDRILFD--G 229
Query: 303 KRALSVQFKDTNTNEIKTVKAKKEIILTAGAIGSPQLLMLSGVGPKSHLDELGIETISDL 362
KRA+ V + + + T KA++E++L AGAI SPQ+L SGVGPK L L I + DL
Sbjct: 230 KRAVGVAYFKGESAQ--TAKARREVLLCAGAIASPQILQRSGVGPKDLLQRLDISVVHDL 287
Query: 363 -RVGYNLVHHVGANLKFSILDNGVSDNNGEIDEKGTYLEESNEGLSSMKGNMDEMLNDGR 421
VG NL H+ L+++ ++ L + + + K + + N
Sbjct: 288 PGVGENLQDHLEMYLQYAC-------------KEPVSLYPALQWFNQPKIGAEWLFNGTG 334
Query: 422 PGRSILSNTFNALFSNNNKEEDKMP------------------CGRRSIYARPTNLLPIS 463
G SN F A +++E P A ++ +S
Sbjct: 335 IG---ASNQFEAGGFIRSRDEFTWPNIQYHFLPVAINYNGSNAVKEHGFQAHVGSMRSLS 391
Query: 464 RGRLVLRSADPFEYPKIHSNYLVMKQDIDVIIEGIRIIQKLTRTKALQKWDFQIDSTKMP 523
RGR+ +RS D E+P I NY+ +QD + IRI +++ AL K+ + S +
Sbjct: 392 RGRVQVRSKDAREHPSILFNYMSTEQDWQEFRDAIRITREIMAQPALDKYRGREISPGL- 450
Query: 524 ECKHFEWDSNEYWECYIKTYTLPENHPGGTCKMGPADDYSSVVDAQLRIHGVPNLRVMDA 583
++E + +I+T+ HP +CKMG +D SVVD Q +HG+ LRV+DA
Sbjct: 451 -----AVQTDEELDEFIRTHAETAFHPSCSCKMG--EDDMSVVDGQGCVHGMEGLRVVDA 503
Query: 584 SIFPTNINSNPIATIIMIAEKGADMVK 610
SI P I N AT IMIAEK AD ++
Sbjct: 504 SIMPQIITGNLNATTIMIAEKIADRIR 530
>sp|A4XPI5|BETA_PSEMY Choline dehydrogenase OS=Pseudomonas mendocina (strain ymp) GN=betA
PE=3 SV=1
Length = 565
Score = 212 bits (540), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 180/574 (31%), Positives = 275/574 (47%), Gaps = 73/574 (12%)
Query: 72 LQEEYDFVVVGGGVAGPVVAGRLVENPNWKVLLLEAG-PDEPT--VTSVPGFAASAV-GT 127
+ E+D++++G G AG V+A RL E+ + VLLLEAG PD T +P A + G
Sbjct: 1 MSHEFDYIIIGAGSAGNVLATRLTEDADVSVLLLEAGGPDYRLDFRTQMPAALAFPLQGR 60
Query: 128 HLDWKYKTERNKYACLSTGGICEWPRGKMLAGTGAMTGMMYTRSHPSIYDEWQR-QGNPG 186
+W Y+T+ + E RGK L G+ + GM Y R + +D W + +G
Sbjct: 61 RYNWAYETDPEPHM---NNRRMECGRGKGLGGSSLINGMCYIRGNALDFDNWAKAKGLED 117
Query: 187 WGFSDVLRYFIKSEHNLNRDQVDPEYHGYDGPLKVQR-FSSYPPIGEDIIKAGKELGYA- 244
W + D L YF K+E +RD +YHG DGP+ V + P+ +++AG + GY
Sbjct: 118 WTYHDCLPYFRKAE---SRDIGPNDYHGGDGPVSVTTPKAGNNPLFHAMVEAGVQAGYPR 174
Query: 245 SGDFNGANQIGVN-FAQVMVDNGVRSSTPRMFLRDKYKQDNLKVQLNAHVMKLNIDPKTK 303
+ D NG Q G + + G R+ST R +L ++ NL + +A ++ D K
Sbjct: 175 TDDLNGYQQEGFGPMDRTVTPQGRRASTARGYLDQARERPNLTIVTHATTDRILFD--GK 232
Query: 304 RALSVQFKDTNTNEIKTVKAKKEIILTAGAIGSPQLLMLSGVGPKSHLDELGIETISDLR 363
RA V + N N+ +A++E++L AGAI SPQ+L SGVGP + L EL I + +L
Sbjct: 233 RASGVSYLIGNANDATEARARREVLLCAGAIASPQILQRSGVGPAALLRELDIALVHEL- 291
Query: 364 VGYNLVHHVGANLKFSILDNGVSDNNGEIDEKGTYLEESNEGLSSMKGNMDEMLNDGRPG 423
VG NL+ D YL+ + S+ + ++LN G
Sbjct: 292 ------PGVGQNLQ---------------DHLEMYLQYACTQPVSLYPAL-KLLNQPGIG 329
Query: 424 RSIL--------SNTFNA--------LFSNNNKEEDKMPCG----------RRSIYARPT 457
L SN F A F+ N + +P A
Sbjct: 330 AQWLFTGNGIGASNQFEAGGFIRTRPEFAWPNIQFHFLPVAINYNGSNAVNEHGFQAHVG 389
Query: 458 NLLPISRGRLVLRSADPFEYPKIHSNYLVMKQDIDVIIEGIRIIQKLTRTKALQKWDFQI 517
++ SRGR+ L+S DP ++P I NY+ +QD + IRI +++ AL + +
Sbjct: 390 SMRSPSRGRIQLKSKDPRQHPSILFNYMSHEQDWQEFRDAIRITREIMAQPALDSYRGRE 449
Query: 518 DSTKMPECKHFEWDSNEYWECYIKTYTLPENHPGGTCKMGPADDYSSVVDAQLRIHGVPN 577
S + +C+ S+ + +I+ + HP +CKMG +D +VVD Q R+HGV
Sbjct: 450 ISPGI-DCQ-----SDAELDAFIREHAETAFHPSCSCKMG--EDDMAVVDGQGRVHGVQG 501
Query: 578 LRVMDASIFPTNINSNPIATIIMIAEKGADMVKE 611
LRV+DASI P I N AT IM+AEK AD +++
Sbjct: 502 LRVVDASIMPEIITGNLNATTIMMAEKIADRIRD 535
>sp|Q8YFY2|BETA_BRUME Choline dehydrogenase OS=Brucella melitensis biotype 1 (strain 16M
/ ATCC 23456 / NCTC 10094) GN=betA PE=3 SV=2
Length = 549
Score = 211 bits (538), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 162/564 (28%), Positives = 266/564 (47%), Gaps = 69/564 (12%)
Query: 75 EYDFVVVGGGVAGPVVAGRLVENPNWKVLLLEAG-PDEPTVTSVPGFAASAVGTH-LDWK 132
E DFV++G G AG +A RL E+ + V+++E G PD + +P + + DW
Sbjct: 2 EADFVIIGSGSAGSAMAYRLSEDGRYSVIVIEYGVPDVGPLIQMPAALSFPMNMETYDWG 61
Query: 133 YKTERNKYACLSTGGICEWPRGKMLAGTGAMTGMMYTRSHPSIYDEWQRQGNPGWGFSDV 192
+ +E + G PRGK+L G+ ++ GM+Y R H +D W + G GW ++DV
Sbjct: 62 FSSEPEPHI---RGRSLVTPRGKVLGGSSSINGMVYVRGHACDFDHWSQSGARGWAYADV 118
Query: 193 LRYFIKSEHNLNRDQVDPEYHGYDGPLKVQRFSSYPPIGEDIIKAGKELGY-ASGDFNGA 251
L YF + E++ + + G +GPL VQR P+ ++AG + G+ + D+NG
Sbjct: 119 LPYFKRMENSQGGQE---GWRGTNGPLYVQRGKRDNPLFHAFVEAGHQAGFEVTDDYNGE 175
Query: 252 NQIGVNFAQVMVDNGVRSSTPRMFLRDKYKQDNLKVQLNAHVMKLNIDPKTKRALSVQFK 311
Q G + + NG R S +L+ K+ N+K+ + K+ ++ KRA+ V+ +
Sbjct: 176 KQEGFGPMEQTIHNGRRWSAANAYLKPALKRPNVKL-VKGFARKIVLE--GKRAVGVEIE 232
Query: 312 DTNTNEIKTVKAKKEIILTAGAIGSPQLLMLSGVGPKSHLDELGIETISDLRVGYNLVHH 371
T T++A++E+I+ A +I SP+LLMLSG+GP +HL E GI+ ++D R G
Sbjct: 233 AGRT--FSTIRARREVIIAASSINSPKLLMLSGIGPAAHLKEHGIDLVAD-RPG------ 283
Query: 372 VGANLKFSILDNGVSDNNGEIDEKGTYLEESNEGLSSMKGNMDEMLNDGRPGRSIL---- 427
VG NL+ D Y+++ ++ ++ + + R G L
Sbjct: 284 VGQNLQ---------------DHLEVYIQQECTQPITLYSKLN-LFSKARIGVEWLLFKT 327
Query: 428 ----SNTF-NALFSNNN-----------------KEEDKMPCGRRSIYARPTNLLPISRG 465
+N F +A F + + + K A + SRG
Sbjct: 328 GDGATNHFESAAFVRSKAGVEYPDIQYHFLPVAIRYDGKAAAQSHGFQAHVGPMRSKSRG 387
Query: 466 RLVLRSADPFEYPKIHSNYLVMKQDIDVIIEGIRIIQKLTRTKALQKWDFQIDSTKMPEC 525
+ LRSA+P E P I NY+ + D +R+ +++ A + ++
Sbjct: 388 SVTLRSANPREKPVIKFNYMSHEDDWADFRHCVRLTREIFGQAAFDPYR----GAEIQPG 443
Query: 526 KHFEWDSNEYWECYIKTYTLPENHPGGTCKMGPADDYSSVVDAQLRIHGVPNLRVMDASI 585
H + D + +I+ + HP GTCKMG DD +VVD + R+ GV LRV D+SI
Sbjct: 444 AHVQTDDE--IDNFIREHVESAFHPCGTCKMGAVDDPMAVVDPECRVIGVEGLRVADSSI 501
Query: 586 FPTNINSNPIATIIMIAEKGADMV 609
FP N N IM+ EK + +
Sbjct: 502 FPRITNGNLNGPSIMVGEKASGHI 525
>sp|Q4ZM63|BETA_PSEU2 Choline dehydrogenase OS=Pseudomonas syringae pv. syringae (strain
B728a) GN=betA PE=3 SV=1
Length = 568
Score = 211 bits (538), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 177/557 (31%), Positives = 270/557 (48%), Gaps = 43/557 (7%)
Query: 73 QEEYDFVVVGGGVAGPVVAGRLVENPNWKVLLLEAG-PDEPT--VTSVPGFAASAV-GTH 128
Q EYD++++G G AG +A RL E+ VLLLEAG PD T +P A + G
Sbjct: 4 QSEYDYIIIGAGSAGNTLAARLTEDAGVTVLLLEAGGPDYRLDFRTQMPAALAFPLQGRR 63
Query: 129 LDWKYKTERNKYACLSTGGICEWPRGKMLAGTGAMTGMMYTRSHPSIYDEWQRQ-GNPGW 187
+W Y+TE + E RGK L G+ + GM Y R + YD W ++ G W
Sbjct: 64 YNWAYETEPEPHM---NNRRMECGRGKGLGGSSLINGMCYIRGNAMDYDGWAKEPGLEDW 120
Query: 188 GFSDVLRYFIKSEHNLNRDQVDPEYHGYDGPLKVQR-FSSYPPIGEDIIKAGKELGYA-S 245
+ D L YF K+E RD +YHG +GP+ V + P+ +++AG + G+ +
Sbjct: 121 SYLDCLPYFRKAE---TRDIGPNDYHGGEGPVSVTTPKAGNNPLFHAMVEAGVQAGFPRT 177
Query: 246 GDFNGANQIGVN-FAQVMVDNGVRSSTPRMFLRDKYKQDNLKVQLNAHVMKLNIDPKTKR 304
D NG Q G + + NG R+ST R +L + K+ L + H + I + KR
Sbjct: 178 DDLNGYQQEGFGPMDRTVTPNGRRASTARGYLDEAKKRSTLTIV--THALTDRILFEGKR 235
Query: 305 ALSVQFKDTNTNEIKTVKAKKEIILTAGAIGSPQLLMLSGVGPKSHLDELGIETISDL-R 363
A+ V + +++ +A+KE++L GAI SPQ+L SGVGP L++L I + DL
Sbjct: 236 AVGVAYLVGDSDTRIQARARKEVLLCGGAIASPQILQRSGVGPAEVLNKLDIPVVHDLPG 295
Query: 364 VGYNLVHHVGANLKF------SILDNGVSDNNGEIDEKGTYLEESNEGLSSMKGNMDEML 417
VG NL H+ L++ S+ + N I + +L G N E
Sbjct: 296 VGQNLQDHLEMYLQYACTQPVSLYPSLKWWNQPAIGAEWMFL-----GTGIGASNQFEAG 350
Query: 418 NDGRPGRSI----LSNTFNALFSNNNKEEDKMPCGRRSIYARPTNLLPISRGRLVLRSAD 473
R + + F + N N + G A ++ SRGR+ ++S D
Sbjct: 351 GFIRSSEAFEWPNIQYHFLPVAINYNGTKGVQEHG---FQAHVGSMRSPSRGRVQVKSKD 407
Query: 474 PFEYPKIHSNYLVMKQDIDVIIEGIRIIQKLTRTKALQKWDFQIDSTKMPECKHFEWDSN 533
P EYP I NY+ +QD +GIR+ +++ + AL + + S + + S+
Sbjct: 408 PREYPSILFNYMASEQDWQEFRDGIRLTREIMQQPALDPYRGREISPGI------DVQSD 461
Query: 534 EYWECYIKTYTLPENHPGGTCKMGPADDYSSVVDAQLRIHGVPNLRVMDASIFPTNINSN 593
E + +++ + HP +CKMG D +VVD Q R+HG+ +LRV+DASI P N
Sbjct: 462 EALDQFVREHAETAYHPSCSCKMG--TDEMAVVDGQGRVHGLQSLRVVDASIMPIITTGN 519
Query: 594 PIATIIMIAEKGADMVK 610
A IMIAEK AD ++
Sbjct: 520 LNAPTIMIAEKIADKIR 536
>sp|Q0TKW1|BETA_ECOL5 Choline dehydrogenase OS=Escherichia coli O6:K15:H31 (strain 536 /
UPEC) GN=betA PE=3 SV=2
Length = 556
Score = 211 bits (538), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 182/572 (31%), Positives = 270/572 (47%), Gaps = 77/572 (13%)
Query: 75 EYDFVVVGGGVAGPVVAGRLVENPNWKVLLLEAG-PDE--PTVTSVPGFAASAV-GTHLD 130
++D++++G G AG V+A RL E+PN VLLLEAG PD T +P A + G +
Sbjct: 2 QFDYIIIGAGSAGNVLATRLTEDPNTTVLLLEAGGPDYRFDFRTQMPAALAFPLQGKRYN 61
Query: 131 WKYKTERNKYACLSTGGICEWPRGKMLAGTGAMTGMMYTRSHPSIYDEW-QRQGNPGWGF 189
W Y+TE + E RGK L G+ + GM Y R + D W Q G W +
Sbjct: 62 WAYETEPEPFM---NNRRMECGRGKGLGGSSLINGMCYIRGNALDLDNWAQEPGLENWSY 118
Query: 190 SDVLRYFIKSEHNLNRDQVDPEYHGYDGPLKVQRFSSYP---PIGEDIIKAGKELGYA-S 245
D L Y+ K+E RD + +YHG DGP+ V +S P P+ E +I+AG + GY +
Sbjct: 119 LDCLPYYRKAE---TRDVGENDYHGGDGPVSV--ITSKPGVNPLFEAMIEAGMQAGYPRT 173
Query: 246 GDFNGANQIGVN-FAQVMVDNGVRSSTPRMFLRDKYKQDNLKVQLNAHVMKLNIDPKTKR 304
D NG Q G + + +G R+ST R +L + NL ++ H M +I KR
Sbjct: 174 DDLNGYQQEGFGPMDRTVTPHGRRASTSRGYLDQAKSRPNLTIR--THAMTDHIIFDGKR 231
Query: 305 ALSVQFKDTNTNEIKTVKAKKEIILTAGAIGSPQLLMLSGVGPKSHLDELGIETISDLRV 364
A+ V++ + ++ A KE++L AGAI SPQ+L SGVG L E I + +L
Sbjct: 232 AVGVEWLEGDSTIPTRAAANKEVLLCAGAIASPQILQRSGVGNAELLAEFDIPLVHELP- 290
Query: 365 GYNLVHHVGANLKFSILDNGVSDNNGEIDEKGTYLEESNEGLSSMKGNMDEMLNDGRPGR 424
VG NL+ D YL+ + S+ + + N R G
Sbjct: 291 ------GVGENLQ---------------DHLEMYLQYECKEPVSLYPAL-QWWNQPRIGA 328
Query: 425 SIL--------SNTFNALFSNNNKEEDKMP------------------CGRRSIYARPTN 458
L SN F A ++EE P +
Sbjct: 329 EWLFGGTGVGASNHFEAGGFIRSREEFAWPNIQYHFLPVAINYNGSNAVKEHGFQCHVGS 388
Query: 459 LLPISRGRLVLRSADPFEYPKIHSNYLVMKQDIDVIIEGIRIIQKLTRTKALQKWDFQID 518
+ SRG + ++S DP ++P I NY+ +QD + IRI +++ AL ++ +
Sbjct: 389 MRSPSRGHVRIKSRDPHQHPGILFNYMSHEQDWQEFRDAIRITREIMHQPALDQYRGREI 448
Query: 519 STKMPECKHFEWDSNEYWECYIKTYTLPENHPGGTCKMGPADDYSSVVDAQLRIHGVPNL 578
S + EC+ ++E + +++ + HP GTCKMG D +VVD + R+HG+ L
Sbjct: 449 SPGV-ECQ-----TDEQLDEFVRNHAETAFHPCGTCKMG--YDEMAVVDGEGRVHGLEGL 500
Query: 579 RVMDASIFPTNINSNPIATIIMIAEKGADMVK 610
RV+DASI P I N AT IMI EK ADM++
Sbjct: 501 RVVDASIMPQIITGNLNATTIMIGEKIADMIR 532
>sp|B5Z1R0|BETA_ECO5E Choline dehydrogenase OS=Escherichia coli O157:H7 (strain EC4115 /
EHEC) GN=betA PE=3 SV=1
Length = 562
Score = 211 bits (538), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 180/572 (31%), Positives = 270/572 (47%), Gaps = 77/572 (13%)
Query: 75 EYDFVVVGGGVAGPVVAGRLVENPNWKVLLLEAG-PDE--PTVTSVPGFAASAV-GTHLD 130
++D++++G G AG V+A RL E+PN VLLLEAG PD T +P A + G +
Sbjct: 2 QFDYIIIGAGSAGNVLATRLTEDPNTSVLLLEAGGPDYRFDFRTQMPAALAFPLQGKRYN 61
Query: 131 WKYKTERNKYACLSTGGICEWPRGKMLAGTGAMTGMMYTRSHPSIYDEWQRQ-GNPGWGF 189
W Y+TE + E RGK L G+ + GM Y R + D W ++ G W +
Sbjct: 62 WAYETEPEPFM---NNRRMECGRGKGLGGSSLINGMCYIRGNAMDLDNWAKEPGLENWSY 118
Query: 190 SDVLRYFIKSEHNLNRDQVDPEYHGYDGPLKVQRFSSYP---PIGEDIIKAGKELGYA-S 245
D L Y+ K+E RD + +YHG DGP+ V +S P P+ E +I+AG + GY +
Sbjct: 119 LDCLPYYRKAE---TRDVGENDYHGGDGPVSVT--TSKPGVNPLFEAMIEAGVQAGYPRT 173
Query: 246 GDFNGANQIGVN-FAQVMVDNGVRSSTPRMFLRDKYKQDNLKVQLNAHVMKLNIDPKTKR 304
D NG Q G + + G R+ST R +L + NL ++ H M +I KR
Sbjct: 174 DDLNGYQQEGFGPMDRTVTPQGRRASTARGYLDQAKSRPNLTIR--THAMTDHIIFDCKR 231
Query: 305 ALSVQFKDTNTNEIKTVKAKKEIILTAGAIGSPQLLMLSGVGPKSHLDELGIETISDLRV 364
A+ V++ + ++ A KE++L AGAI SPQ+L SGVG L E I + D
Sbjct: 232 AVGVEWLEGDSTIPTRATANKEVLLCAGAIASPQILQRSGVGNAELLAEFDIPLVHD--- 288
Query: 365 GYNLVHHVGANLKFSILDNGVSDNNGEIDEKGTYLEESNEGLSSMKGNMDEMLNDGRPGR 424
+ VG NL+ D YL+ + S+ + + N + G
Sbjct: 289 ----LPGVGENLQ---------------DHLEMYLQYECKEPVSLYPAL-QWWNQPKIGA 328
Query: 425 SIL--------SNTFNALFSNNNKEEDKMP------------------CGRRSIYARPTN 458
L SN F A ++EE P +
Sbjct: 329 EWLFGGTGVGASNHFEAGGFIRSREEFAWPNIQYHFLPVAINYNGSNAVKEHGFQCHVGS 388
Query: 459 LLPISRGRLVLRSADPFEYPKIHSNYLVMKQDIDVIIEGIRIIQKLTRTKALQKWDFQID 518
+ SRG + ++S DP ++P I NY+ +QD + IRI +++ AL ++ + +
Sbjct: 389 MRSPSRGHVRIKSRDPHQHPAILFNYMSHEQDWQEFRDAIRITREIMHQPALDQYRGR-E 447
Query: 519 STKMPECKHFEWDSNEYWECYIKTYTLPENHPGGTCKMGPADDYSSVVDAQLRIHGVPNL 578
+ EC+ ++E + +++ + HP GTCKMG D SVVD + R+HG+ L
Sbjct: 448 ISPGTECQ-----TDEQLDEFVRNHAETAFHPCGTCKMG--YDEMSVVDGEGRVHGLEGL 500
Query: 579 RVMDASIFPTNINSNPIATIIMIAEKGADMVK 610
RV+DASI P I N AT IMI EK ADM++
Sbjct: 501 RVVDASIMPQIITGNLNATTIMIGEKMADMIR 532
>sp|Q8X6C6|BETA_ECO57 Choline dehydrogenase OS=Escherichia coli O157:H7 GN=betA PE=3 SV=1
Length = 562
Score = 211 bits (538), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 180/572 (31%), Positives = 270/572 (47%), Gaps = 77/572 (13%)
Query: 75 EYDFVVVGGGVAGPVVAGRLVENPNWKVLLLEAG-PDE--PTVTSVPGFAASAV-GTHLD 130
++D++++G G AG V+A RL E+PN VLLLEAG PD T +P A + G +
Sbjct: 2 QFDYIIIGAGSAGNVLATRLTEDPNTSVLLLEAGGPDYRFDFRTQMPAALAFPLQGKRYN 61
Query: 131 WKYKTERNKYACLSTGGICEWPRGKMLAGTGAMTGMMYTRSHPSIYDEWQRQ-GNPGWGF 189
W Y+TE + E RGK L G+ + GM Y R + D W ++ G W +
Sbjct: 62 WAYETEPEPFM---NNRRMECGRGKGLGGSSLINGMCYIRGNAMDLDNWAKEPGLENWSY 118
Query: 190 SDVLRYFIKSEHNLNRDQVDPEYHGYDGPLKVQRFSSYP---PIGEDIIKAGKELGYA-S 245
D L Y+ K+E RD + +YHG DGP+ V +S P P+ E +I+AG + GY +
Sbjct: 119 LDCLPYYRKAE---TRDVGENDYHGGDGPVSVT--TSKPGVNPLFEAMIEAGVQAGYPRT 173
Query: 246 GDFNGANQIGVN-FAQVMVDNGVRSSTPRMFLRDKYKQDNLKVQLNAHVMKLNIDPKTKR 304
D NG Q G + + G R+ST R +L + NL ++ H M +I KR
Sbjct: 174 DDLNGYQQEGFGPMDRTVTPQGRRASTARGYLDQAKSRPNLTIR--THAMTDHIIFDCKR 231
Query: 305 ALSVQFKDTNTNEIKTVKAKKEIILTAGAIGSPQLLMLSGVGPKSHLDELGIETISDLRV 364
A+ V++ + ++ A KE++L AGAI SPQ+L SGVG L E I + D
Sbjct: 232 AVGVEWLEGDSTIPTRATANKEVLLCAGAIASPQILQRSGVGNAELLAEFDIPLVHD--- 288
Query: 365 GYNLVHHVGANLKFSILDNGVSDNNGEIDEKGTYLEESNEGLSSMKGNMDEMLNDGRPGR 424
+ VG NL+ D YL+ + S+ + + N + G
Sbjct: 289 ----LPGVGENLQ---------------DHLEMYLQYECKEPVSLYPAL-QWWNQPKIGA 328
Query: 425 SIL--------SNTFNALFSNNNKEEDKMP------------------CGRRSIYARPTN 458
L SN F A ++EE P +
Sbjct: 329 EWLFGGTGVGASNHFEAGGFIRSREEFAWPNIQYHFLPVAINYNGSNAVKEHGFQCHVGS 388
Query: 459 LLPISRGRLVLRSADPFEYPKIHSNYLVMKQDIDVIIEGIRIIQKLTRTKALQKWDFQID 518
+ SRG + ++S DP ++P I NY+ +QD + IRI +++ AL ++ + +
Sbjct: 389 MRSPSRGHVRIKSRDPHQHPAILFNYMSHEQDWQEFRDAIRITREIMHQPALDQYRGR-E 447
Query: 519 STKMPECKHFEWDSNEYWECYIKTYTLPENHPGGTCKMGPADDYSSVVDAQLRIHGVPNL 578
+ EC+ ++E + +++ + HP GTCKMG D SVVD + R+HG+ L
Sbjct: 448 ISPGTECQ-----TDEQLDEFVRNHAETAFHPCGTCKMG--YDEMSVVDGEGRVHGLEGL 500
Query: 579 RVMDASIFPTNINSNPIATIIMIAEKGADMVK 610
RV+DASI P I N AT IMI EK ADM++
Sbjct: 501 RVVDASIMPQIITGNLNATTIMIGEKMADMIR 532
>sp|B0KN19|BETA_PSEPG Choline dehydrogenase OS=Pseudomonas putida (strain GB-1) GN=betA
PE=3 SV=1
Length = 565
Score = 211 bits (536), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 179/558 (32%), Positives = 271/558 (48%), Gaps = 43/558 (7%)
Query: 72 LQEEYDFVVVGGGVAGPVVAGRLVENPNWKVLLLEAG-PDE--PTVTSVPGFAASAV-GT 127
+ +E+D+++VG G AG +A RL E+ VLLLEAG PD T +P A + G
Sbjct: 1 MSQEFDYIIVGAGSAGNTLATRLTEDAGVTVLLLEAGGPDYRFDFRTQMPAALAFPLQGR 60
Query: 128 HLDWKYKTERNKYACLSTGGICEWPRGKMLAGTGAMTGMMYTRSHPSIYDEW-QRQGNPG 186
+W Y+T+ + G E RGK L G+ + GM Y R + +D W + G
Sbjct: 61 RYNWAYETDPEPHM---DGRRMECGRGKGLGGSSLINGMCYIRGNAMDFDGWAELPGLQD 117
Query: 187 WGFSDVLRYFIKSEHNLNRDQVDPEYHGYDGPLKVQR-FSSYPPIGEDIIKAGKELGYA- 244
W + D L YF K+E RD +YHG +GP+ V + P+ +++AG + GY
Sbjct: 118 WTYLDCLPYFRKAE---TRDIGPNDYHGGEGPVSVATPKAGNNPLFHAMVEAGVQAGYPR 174
Query: 245 SGDFNGANQIGVN-FAQVMVDNGVRSSTPRMFLRDKYKQDNLKVQLNAHVMKLNIDPKTK 303
+ D NG Q G + + NG RSST R +L K+ NL + +A ++ D K
Sbjct: 175 TEDLNGYQQEGFGPMDRSVTKNGRRSSTARGYLDQAKKRPNLTIVTHALSDRVLFD--GK 232
Query: 304 RALSVQFKDTNTNEIKTVKAKKEIILTAGAIGSPQLLMLSGVGPKSHLDELGIETISDL- 362
RA+ V + ++ E +A+KE+I+++GAI SPQLL SGVGP++ L+ L I + DL
Sbjct: 233 RAVGVTYLVGDSEERVEARARKEVIVSSGAIASPQLLQRSGVGPRALLESLDIPVVHDLP 292
Query: 363 RVGYNLVHHVGANLKF----------SILDNGVSDNNGEIDEKGTYLEESNEGLSSMKGN 412
VG NL H+ L++ S+L E KGT + SN+ +
Sbjct: 293 GVGENLQDHLELYLQYACTQPVSLYPSLLWWNQPAIGAEWMFKGTGIGASNQFEAGGFIR 352
Query: 413 MDEMLNDGRPGRSILSNTFNALFSNNNKEEDKMPCGRRSIYARPTNLLPISRGRLVLRSA 472
L N SN KE A ++ +RGR+ +S
Sbjct: 353 TRPEFKWPNIQYHFLPVAINYNGSNGVKEH--------GFQAHMGSMRSPARGRIQAKSK 404
Query: 473 DPFEYPKIHSNYLVMKQDIDVIIEGIRIIQKLTRTKALQKWDFQIDSTKMPECKHFEWDS 532
DP ++P I NY+ +QD +GIR+ +++ AL + + S + +
Sbjct: 405 DPRQHPSILFNYMSTEQDWQEFRDGIRLTREIMAQPALDPYRGREISPGA------DVQT 458
Query: 533 NEYWECYIKTYTLPENHPGGTCKMGPADDYSSVVDAQLRIHGVPNLRVMDASIFPTNINS 592
+E + +I+ + HP +CKMG D +VVD + R+HG+ LRV+DASI P I
Sbjct: 459 DEQLDKFIREHAETAFHPSCSCKMGTDD--MAVVDGEGRVHGMKGLRVVDASIMPLIITG 516
Query: 593 NPIATIIMIAEKGADMVK 610
N AT IMIAEK +D ++
Sbjct: 517 NLNATTIMIAEKISDKIR 534
>sp|Q1RFM3|BETA_ECOUT Choline dehydrogenase OS=Escherichia coli (strain UTI89 / UPEC)
GN=betA PE=3 SV=2
Length = 562
Score = 211 bits (536), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 181/572 (31%), Positives = 271/572 (47%), Gaps = 77/572 (13%)
Query: 75 EYDFVVVGGGVAGPVVAGRLVENPNWKVLLLEAG-PDE--PTVTSVPGFAASAV-GTHLD 130
++D++++G G AG V+A RL E+PN VLLLEAG PD T +P A + G +
Sbjct: 2 QFDYIIIGAGSAGNVLATRLTEDPNTTVLLLEAGGPDYRFDFRTQMPAALAFPLQGKRYN 61
Query: 131 WKYKTERNKYACLSTGGICEWPRGKMLAGTGAMTGMMYTRSHPSIYDEW-QRQGNPGWGF 189
W Y+TE + E RGK L G+ + GM Y R + D W Q G W +
Sbjct: 62 WAYETEPEPFM---NNRRMECGRGKGLGGSSLINGMCYIRGNALDLDNWAQEPGLENWSY 118
Query: 190 SDVLRYFIKSEHNLNRDQVDPEYHGYDGPLKVQRFSSYP---PIGEDIIKAGKELGYA-S 245
D L Y+ K+E RD + +YHG DGP+ V +S P P+ E +I+AG + GY +
Sbjct: 119 LDCLPYYRKAE---TRDVGENDYHGGDGPVSVT--TSKPGVNPLFEAMIEAGVQAGYPRT 173
Query: 246 GDFNGANQIGVN-FAQVMVDNGVRSSTPRMFLRDKYKQDNLKVQLNAHVMKLNIDPKTKR 304
D NG Q G + + +G R+ST R +L + NL ++ H M +I KR
Sbjct: 174 DDLNGYQQEGFGPMDRTVTPHGRRASTARGYLDQAKSRPNLTIR--THAMTDHIFFDGKR 231
Query: 305 ALSVQFKDTNTNEIKTVKAKKEIILTAGAIGSPQLLMLSGVGPKSHLDELGIETISDLRV 364
A+ V++ + ++ A KE++L AGAI SPQ+L SGVG L E I + +
Sbjct: 232 AVGVEWLEGDSTIPTRAAANKEVLLCAGAIASPQILQRSGVGNAELLAEFDIPLVHE--- 288
Query: 365 GYNLVHHVGANLKFSILDNGVSDNNGEIDEKGTYLEESNEGLSSMKGNMDEMLNDGRPGR 424
+ VG NL+ D YL+ + S+ + + N + G
Sbjct: 289 ----LPGVGENLQ---------------DHLEMYLQYECKEPVSLYPAL-QWWNQPKIGA 328
Query: 425 SIL--------SNTFNALFSNNNKEEDKMP------------------CGRRSIYARPTN 458
L SN F A ++EE P +
Sbjct: 329 EWLFGGTGVGASNHFEAGGFIRSREEFAWPNIQYHFLPVAINYNGSNAVKEHGFQCHVGS 388
Query: 459 LLPISRGRLVLRSADPFEYPKIHSNYLVMKQDIDVIIEGIRIIQKLTRTKALQKWDFQID 518
+ SRG + ++S DP ++P I NY+ +QD + IRI +++ AL ++ +
Sbjct: 389 MRSPSRGHVRIKSRDPHQHPAILFNYMSHEQDWQEFRDAIRITREIMHQPALDQYRGREI 448
Query: 519 STKMPECKHFEWDSNEYWECYIKTYTLPENHPGGTCKMGPADDYSSVVDAQLRIHGVPNL 578
S + EC+ ++E + +++ + HP GTCKMG D +VVDA+ R+HG+ L
Sbjct: 449 SPGV-ECQ-----TDEQLDEFVRNHAETAFHPCGTCKMG--YDEMAVVDAEGRVHGLEGL 500
Query: 579 RVMDASIFPTNINSNPIATIIMIAEKGADMVK 610
RV+DASI P I N AT IMI EK ADM++
Sbjct: 501 RVVDASIMPQIITGNLNATTIMIGEKMADMIR 532
>sp|B7MCD0|BETA_ECO45 Choline dehydrogenase OS=Escherichia coli O45:K1 (strain S88 /
ExPEC) GN=betA PE=3 SV=1
Length = 562
Score = 211 bits (536), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 181/572 (31%), Positives = 271/572 (47%), Gaps = 77/572 (13%)
Query: 75 EYDFVVVGGGVAGPVVAGRLVENPNWKVLLLEAG-PDE--PTVTSVPGFAASAV-GTHLD 130
++D++++G G AG V+A RL E+PN VLLLEAG PD T +P A + G +
Sbjct: 2 QFDYIIIGAGSAGNVLATRLTEDPNTTVLLLEAGGPDYRFDFRTQMPAALAFPLQGKRYN 61
Query: 131 WKYKTERNKYACLSTGGICEWPRGKMLAGTGAMTGMMYTRSHPSIYDEW-QRQGNPGWGF 189
W Y+TE + E RGK L G+ + GM Y R + D W Q G W +
Sbjct: 62 WAYETEPEPFM---NNRRMECGRGKGLGGSSLINGMCYIRGNALDLDNWAQEPGLENWSY 118
Query: 190 SDVLRYFIKSEHNLNRDQVDPEYHGYDGPLKVQRFSSYP---PIGEDIIKAGKELGYA-S 245
D L Y+ K+E RD + +YHG DGP+ V +S P P+ E +I+AG + GY +
Sbjct: 119 LDCLPYYRKAE---TRDVGENDYHGGDGPVSVT--TSKPGVNPLFEAMIEAGVQAGYPRT 173
Query: 246 GDFNGANQIGVN-FAQVMVDNGVRSSTPRMFLRDKYKQDNLKVQLNAHVMKLNIDPKTKR 304
D NG Q G + + +G R+ST R +L + NL ++ H M +I KR
Sbjct: 174 DDLNGYQQEGFGPMDRTVTPHGRRASTARGYLDQAKSRPNLTIR--THAMTDHIFFDGKR 231
Query: 305 ALSVQFKDTNTNEIKTVKAKKEIILTAGAIGSPQLLMLSGVGPKSHLDELGIETISDLRV 364
A+ V++ + ++ A KE++L AGAI SPQ+L SGVG L E I + +
Sbjct: 232 AVGVEWLEGDSTIPTRAAANKEVLLCAGAIASPQILQRSGVGNAELLAEFDIPLVHE--- 288
Query: 365 GYNLVHHVGANLKFSILDNGVSDNNGEIDEKGTYLEESNEGLSSMKGNMDEMLNDGRPGR 424
+ VG NL+ D YL+ + S+ + + N + G
Sbjct: 289 ----LPGVGENLQ---------------DHLEMYLQYECKEPVSLYPAL-QWWNQPKIGA 328
Query: 425 SIL--------SNTFNALFSNNNKEEDKMP------------------CGRRSIYARPTN 458
L SN F A ++EE P +
Sbjct: 329 EWLFGGTGVGASNHFEAGGFIRSREEFAWPNIQYHFLPVAINYNGSNAVKEHGFQCHVGS 388
Query: 459 LLPISRGRLVLRSADPFEYPKIHSNYLVMKQDIDVIIEGIRIIQKLTRTKALQKWDFQID 518
+ SRG + ++S DP ++P I NY+ +QD + IRI +++ AL ++ +
Sbjct: 389 MRSPSRGHVRIKSRDPHQHPAILFNYMSHEQDWQEFRDAIRITREIMHQPALDQYRGREI 448
Query: 519 STKMPECKHFEWDSNEYWECYIKTYTLPENHPGGTCKMGPADDYSSVVDAQLRIHGVPNL 578
S + EC+ ++E + +++ + HP GTCKMG D +VVDA+ R+HG+ L
Sbjct: 449 SPGV-ECQ-----TDEQLDEFVRNHAETAFHPCGTCKMG--YDEMAVVDAEGRVHGLEGL 500
Query: 579 RVMDASIFPTNINSNPIATIIMIAEKGADMVK 610
RV+DASI P I N AT IMI EK ADM++
Sbjct: 501 RVVDASIMPQIITGNLNATTIMIGEKMADMIR 532
>sp|B4EX94|BETA_PROMH Choline dehydrogenase OS=Proteus mirabilis (strain HI4320) GN=betA
PE=3 SV=1
Length = 555
Score = 210 bits (534), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 186/559 (33%), Positives = 272/559 (48%), Gaps = 53/559 (9%)
Query: 76 YDFVVVGGGVAGPVVAGRLVENPNWKVLLLEAG-PDE--PTVTSVPGFAASAV-GTHLDW 131
YD++++G G AG V+A RL E+P+ VLLLEAG PD T +P A + G +W
Sbjct: 3 YDYIIIGAGSAGNVLATRLTEDPDVTVLLLEAGGPDYRFDFRTQMPAALAYPLQGRRYNW 62
Query: 132 KYKTERNKYACLSTGGICEWPRGKMLAGTGAMTGMMYTRSHPSIYDEWQR-QGNPGWGFS 190
Y+TE + E RGK L G+ + GM Y R + +DEW + G W +
Sbjct: 63 AYETEPEPHM---NNRRMECGRGKGLGGSSLINGMCYIRGNAMDFDEWAKLPGLEDWNYL 119
Query: 191 DVLRYFIKSEHNLNRDQVDPEYHGYDGPLKVQRFSSYPPIGEDI-----IKAGKELGYA- 244
+ L YF K+E RD +YHG GP+ V + P G ++ ++AG + GY
Sbjct: 120 NCLPYFRKAE---TRDIGANDYHGDSGPVSV----TTPKKGNNVLFHAMVEAGVQAGYPR 172
Query: 245 SGDFNGANQIGVN-FAQVMVDNGVRSSTPRMFLRDKYKQDNLKVQLNAHVMKLNIDPKTK 303
+ D NG Q G + + +G R+ST R +L + NL ++ H I+ + K
Sbjct: 173 TDDLNGYQQEGFGPMDRTVTPHGRRASTARGYLDQAKSRKNLTIE--THATTDIIEFEGK 230
Query: 304 RALSVQ-FKDTNTNEIKTVKAKKEIILTAGAIGSPQLLMLSGVGPKSHLDELGIETISDL 362
+A V+ FK TNT + VKA+KEI+L AGAI SPQ+L SGVGP+ L+E I + L
Sbjct: 231 KASGVRYFKGTNTTP-QHVKARKEILLCAGAIASPQILQRSGVGPEDVLNEFDISPVHVL 289
Query: 363 -RVGYNLVHHVGANLKF------SILDNGVSDNNGEIDE----KGTYLEESNEGLSSMKG 411
VG NL H+ L++ S+ N +I KGT + SN+ +
Sbjct: 290 PGVGQNLQDHLEMYLQYECKQPVSLYPALKWYNQPKIGAEWLFKGTGIGASNQFEAGGFI 349
Query: 412 NMDEMLNDGRPGRSILSNTFNALFSNNNKEEDKMPCGRRSIYARPTNLLPISRGRLVLRS 471
E L N ++ +N E A ++ SRGR+ + S
Sbjct: 350 RSSEKFAWPNIQFHFLPVAIN--YNGSNAVE------VHGFQAHVGSMRSPSRGRIKITS 401
Query: 472 ADPFEYPKIHSNYLVMKQDIDVIIEGIRIIQKLTRTKALQKWDFQIDSTKMPECKHFEWD 531
DP ++P I NY+ +QD IRI +++ AL + ++ K + D
Sbjct: 402 RDPHQHPSILFNYMSTEQDWQEFRAAIRITREIMAQPALDPY----RGEEISPGKDIQTD 457
Query: 532 SNEYWECYIKTYTLPENHPGGTCKMGPADDYSSVVDAQLRIHGVPNLRVMDASIFPTNIN 591
E + +++ HP G+CKMG +D +VVD R+HG+ +LRV+DASI P I
Sbjct: 458 --EQLDAFVRERAETAFHPCGSCKMG--NDEMAVVDGAGRVHGIESLRVIDASIMPNIIT 513
Query: 592 SNPIATIIMIAEKGADMVK 610
N AT IMIAEK AD +K
Sbjct: 514 GNLNATTIMIAEKMADKIK 532
>sp|A6U6Y8|BETA_SINMW Choline dehydrogenase OS=Sinorhizobium medicae (strain WSM419)
GN=betA PE=3 SV=1
Length = 549
Score = 210 bits (534), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 166/552 (30%), Positives = 261/552 (47%), Gaps = 45/552 (8%)
Query: 75 EYDFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGPDE--PTVTSVPGFAASAVGTHLDWK 132
+ DFV++G G AG +A RL E+ V++LE G + P + A +W
Sbjct: 2 QADFVIIGSGSAGSALAYRLSEDGANSVVVLEFGGSDVGPFIQMPAALAWPMSMNRYNWG 61
Query: 133 YKTERNKYACLSTGGICEWPRGKMLAGTGAMTGMMYTRSHPSIYDEWQRQGNPGWGFSDV 192
Y +E L+ I PRGK++ G+ ++ GM+Y R H +D W+ G GW ++DV
Sbjct: 62 YLSEPEP--NLNNRRITA-PRGKVIGGSSSINGMVYVRGHSEDFDRWEELGAKGWAYADV 118
Query: 193 LRYFIKSEHNLNRDQVDPEYHGYDGPLKVQRFSSYPPIGEDIIKAGKELGY-ASGDFNGA 251
L Y+ + EH+ ++ + G DGPL VQR P+ I+AGK+ G+ + D+NG+
Sbjct: 119 LPYYKRMEHSHGGEE---GWRGTDGPLHVQRGPVKNPLFHAFIEAGKQAGFEVTEDYNGS 175
Query: 252 NQIGVNFAQVMVDNGVRSSTPRMFLRDKYKQDNLKVQLNAHVMKLNIDPKTKRALSVQFK 311
Q G + G R S +LR K+ N+++ + K+ I+ RA V+ +
Sbjct: 176 KQEGFGLMEQTTWRGRRWSAASAYLRPALKRPNVEL-VRCFARKIVIE--NGRATGVEIE 232
Query: 312 DTNTNEIKTVKAKKEIILTAGAIGSPQLLMLSGVGPKSHLDELGIETISDL-RVGYNLVH 370
E+ V+A +E+I++A + SP+LLMLSG+GP +HL E+GI+ +D VG NL
Sbjct: 233 RGGRTEV--VRANREVIVSASSFNSPKLLMLSGIGPAAHLQEMGIDVKADRPGVGQNLQD 290
Query: 371 HVGANLK---------FSILD---NGVSDNNGEIDEKGTYLEESNEGLSSMKGNMDEMLN 418
H+ + +S L GV+ ++G + E + ++
Sbjct: 291 HMEFYFQQVSTKPVSLYSWLPWFWQGVAGAQWLFFKRGLGISNQFESCAFLRSAPGVKQP 350
Query: 419 DGRPGRSILSNTFNALFSNNNKEEDKMPCGRRSIYARPTNLLPISRGRLVLRSADPFEYP 478
D I + S + K K L SRG + LRS+DP P
Sbjct: 351 D------IQYHFLPVAISYDGKAAAK----SHGFQVHVGYNLSKSRGDVTLRSSDPKADP 400
Query: 479 KIHSNYLVMKQDIDVIIEGIRIIQKLTRTKALQKWDFQIDSTKMPECKHFE-WDSNEYWE 537
I NY+ +D + +R+ +++ KA D + PE + E ++E +
Sbjct: 401 VIRFNYMSHPEDWEKFRHCVRLTREIFGQKAF-------DLYRGPEIQPGEKVRTDEEID 453
Query: 538 CYIKTYTLPENHPGGTCKMGPADDYSSVVDAQLRIHGVPNLRVMDASIFPTNINSNPIAT 597
+++ + HP GTCKMG DD +VVD + R+ GV LRV D+SIFP N A
Sbjct: 454 AFLREHLESAYHPCGTCKMGAKDDPMAVVDPETRVIGVDGLRVADSSIFPHITYGNLNAP 513
Query: 598 IIMIAEKGADMV 609
IM EK AD +
Sbjct: 514 SIMTGEKAADHI 525
>sp|C3K3D3|BETA_PSEFS Choline dehydrogenase OS=Pseudomonas fluorescens (strain SBW25)
GN=betA PE=3 SV=1
Length = 567
Score = 210 bits (534), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 178/558 (31%), Positives = 267/558 (47%), Gaps = 43/558 (7%)
Query: 72 LQEEYDFVVVGGGVAGPVVAGRLVENPNWKVLLLEAG-PDEPT--VTSVPGFAASAV-GT 127
+ +EYD+++VG G AG +A RL E+ VLLLEAG PD T +P A + G
Sbjct: 1 MSQEYDYIIVGAGSAGNTLATRLTEDEGVTVLLLEAGGPDYRLDFRTQMPAALAFPLQGR 60
Query: 128 HLDWKYKTERNKYACLSTGGICEWPRGKMLAGTGAMTGMMYTRSHPSIYDEWQR-QGNPG 186
+W Y+T+ + G E RGK L G+ + GM Y R + YD W + G
Sbjct: 61 RYNWAYETDPEPHM---DGRRMECGRGKGLGGSSLINGMCYIRGNAMDYDNWAKLPGLEN 117
Query: 187 WGFSDVLRYFIKSEHNLNRDQVDPEYHGYDGPLKVQR-FSSYPPIGEDIIKAGKELGYA- 244
W + D L YF K+E RD +YHG +GP+ V + P+ +++AG + GY
Sbjct: 118 WTYLDCLPYFRKAE---TRDIGPNDYHGGEGPVSVTTPKAGNNPLFHAMVEAGVQAGYPR 174
Query: 245 SGDFNGANQIGVN-FAQVMVDNGVRSSTPRMFLRDKYKQDNLKVQLNAHVMKLNIDPKTK 303
+ D NG Q G + + NG R+ST R +L K+ L + +A K+ + K
Sbjct: 175 TDDLNGYQQEGFGPMDRTVTKNGRRASTARGYLDTAKKRSTLTIVTHALTDKVLFE--GK 232
Query: 304 RALSVQFKDTNTNEIKTVKAKKEIILTAGAIGSPQLLMLSGVGPKSHLDELGIETISDL- 362
RA+ V++ E +A+KE+++ +GAI SPQLL SGVGP L+ L I + DL
Sbjct: 233 RAVGVRYLIGAAEERVEARARKEVLVCSGAIASPQLLQRSGVGPAKLLESLDIPVVHDLP 292
Query: 363 RVGYNLVHHVGANLKF----------SILDNGVSDNNGEIDEKGTYLEESNEGLSSMKGN 412
VG NL H+ L++ S+L E GT + SN+ +
Sbjct: 293 GVGENLQDHLELYLQYACTQPVSLYPSLLWYNQPAIGAEWLFNGTGIGASNQFEAGGFIR 352
Query: 413 MDEMLNDGRPGRSILSNTFNALFSNNNKEEDKMPCGRRSIYARPTNLLPISRGRLVLRSA 472
+ L N SN KE A ++ SRGR+ L+S
Sbjct: 353 SRPEFDWPNIQYHFLPVAINYNGSNGVKEH--------GFQAHMGSMRSPSRGRVQLKSK 404
Query: 473 DPFEYPKIHSNYLVMKQDIDVIIEGIRIIQKLTRTKALQKWDFQIDSTKMPECKHFEWDS 532
+P +YP I NY+ +QD +GIR+ +++ + AL + + S + + +
Sbjct: 405 NPRDYPSILFNYMATEQDWQEFRDGIRLTREIMQQPALDPYRGREISPGI------DVQT 458
Query: 533 NEYWECYIKTYTLPENHPGGTCKMGPADDYSSVVDAQLRIHGVPNLRVMDASIFPTNINS 592
+E + +I+ + HP +CKMG D +VVD + R+HG+ LRV+DASI P
Sbjct: 459 DEQLDKFIREHAETAFHPSCSCKMG--TDEMAVVDGEGRVHGMQGLRVVDASIMPIITTG 516
Query: 593 NPIATIIMIAEKGADMVK 610
N A IMIAEK AD ++
Sbjct: 517 NLNAPTIMIAEKIADKIR 534
>sp|B7UJG4|BETA_ECO27 Choline dehydrogenase OS=Escherichia coli O127:H6 (strain E2348/69
/ EPEC) GN=betA PE=3 SV=1
Length = 556
Score = 210 bits (534), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 181/572 (31%), Positives = 269/572 (47%), Gaps = 77/572 (13%)
Query: 75 EYDFVVVGGGVAGPVVAGRLVENPNWKVLLLEAG-PDE--PTVTSVPGFAASAV-GTHLD 130
++D++++G G AG V+A RL E+PN VLLLEAG PD T +P A + G +
Sbjct: 2 QFDYIIIGAGSAGNVLATRLTEDPNTTVLLLEAGGPDYRFDFRTQMPAALAFPLQGKRYN 61
Query: 131 WKYKTERNKYACLSTGGICEWPRGKMLAGTGAMTGMMYTRSHPSIYDEW-QRQGNPGWGF 189
W Y+TE + E RGK L G+ + GM Y R + D W Q G W +
Sbjct: 62 WAYETEPEPFM---NNRRMECGRGKGLGGSSLINGMCYIRGNALDLDNWAQEPGLENWSY 118
Query: 190 SDVLRYFIKSEHNLNRDQVDPEYHGYDGPLKVQRFSSYP---PIGEDIIKAGKELGYA-S 245
D L Y+ K+E RD + +YHG DGP+ V +S P P+ E +I+AG + GY +
Sbjct: 119 LDCLPYYRKAE---TRDVGENDYHGGDGPVSV--ITSKPGVNPLFEAMIEAGMQAGYPRT 173
Query: 246 GDFNGANQIGVN-FAQVMVDNGVRSSTPRMFLRDKYKQDNLKVQLNAHVMKLNIDPKTKR 304
D NG Q G + + +G R+ST R +L + NL ++ H M +I KR
Sbjct: 174 DDLNGYQQEGFGPMDRTVTPHGRRASTARGYLDQAKSRPNLTIR--THAMTDHIIFDGKR 231
Query: 305 ALSVQFKDTNTNEIKTVKAKKEIILTAGAIGSPQLLMLSGVGPKSHLDELGIETISDLRV 364
A+ V++ + ++ A KE++L AGAI SPQ+L SGVG L E I + +L
Sbjct: 232 AVGVEWLEGDSTIPTRAAANKEVLLCAGAIASPQILQRSGVGNAELLAEFDIPLVHELP- 290
Query: 365 GYNLVHHVGANLKFSILDNGVSDNNGEIDEKGTYLEESNEGLSSMKGNMDEMLNDGRPGR 424
VG NL+ D YL+ + S+ + + N R G
Sbjct: 291 ------GVGENLQ---------------DHLEMYLQYECKEPVSLYPAL-QWWNQPRIGA 328
Query: 425 SIL--------SNTFNALFSNNNKEEDKMP------------------CGRRSIYARPTN 458
L SN F A ++EE P +
Sbjct: 329 EWLFGGTGVGASNHFEAGGFIRSREEFAWPNIQYHFLPVAINYNGSNAVKEHGFQCHVGS 388
Query: 459 LLPISRGRLVLRSADPFEYPKIHSNYLVMKQDIDVIIEGIRIIQKLTRTKALQKWDFQID 518
+ SRG + ++S DP ++P I NY+ +QD + IR +++ AL ++ +
Sbjct: 389 MRSPSRGHVRIKSRDPHQHPAILFNYMSHEQDWQEFRDAIRTTREIMHQPALDQYRGREI 448
Query: 519 STKMPECKHFEWDSNEYWECYIKTYTLPENHPGGTCKMGPADDYSSVVDAQLRIHGVPNL 578
S + EC+ ++E + +++ + HP GTCKMG D +VVD + R+HG+ L
Sbjct: 449 SPGV-ECQ-----TDEQLDEFVRNHAETAFHPCGTCKMG--YDEMAVVDGEGRVHGLEGL 500
Query: 579 RVMDASIFPTNINSNPIATIIMIAEKGADMVK 610
RV+DASI P I N AT IMI EK ADM++
Sbjct: 501 RVVDASIMPQIITGNLNATTIMIGEKIADMIR 532
>sp|P17444|BETA_ECOLI Choline dehydrogenase OS=Escherichia coli (strain K12) GN=betA PE=1
SV=1
Length = 556
Score = 209 bits (533), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 181/572 (31%), Positives = 269/572 (47%), Gaps = 77/572 (13%)
Query: 75 EYDFVVVGGGVAGPVVAGRLVENPNWKVLLLEAG-PDE--PTVTSVPGFAASAV-GTHLD 130
++D++++G G AG V+A RL E+PN VLLLEAG PD T +P A + G +
Sbjct: 2 QFDYIIIGAGSAGNVLATRLTEDPNTSVLLLEAGGPDYRFDFRTQMPAALAFPLQGKRYN 61
Query: 131 WKYKTERNKYACLSTGGICEWPRGKMLAGTGAMTGMMYTRSHPSIYDEW-QRQGNPGWGF 189
W Y+TE + E RGK L G+ + GM Y R + D W Q G W +
Sbjct: 62 WAYETEPEPFM---NNRRMECGRGKGLGGSSLINGMCYIRGNALDLDNWAQEPGLENWSY 118
Query: 190 SDVLRYFIKSEHNLNRDQVDPEYHGYDGPLKVQRFSSYP---PIGEDIIKAGKELGYA-S 245
D L Y+ K+E RD + +YHG DGP+ V +S P P+ E +I+AG + GY +
Sbjct: 119 LDCLPYYRKAE---TRDMGENDYHGGDGPVSVT--TSKPGVNPLFEAMIEAGVQAGYPRT 173
Query: 246 GDFNGANQIGVN-FAQVMVDNGVRSSTPRMFLRDKYKQDNLKVQLNAHVMKLNIDPKTKR 304
D NG Q G + + G R+ST R +L + NL ++ H M +I KR
Sbjct: 174 DDLNGYQQEGFGPMDRTVTPQGRRASTARGYLDQAKSRPNLTIR--THAMTDHIIFDGKR 231
Query: 305 ALSVQFKDTNTNEIKTVKAKKEIILTAGAIGSPQLLMLSGVGPKSHLDELGIETISDLRV 364
A+ V++ + ++ A KE++L AGAI SPQ+L SGVG L E I + +
Sbjct: 232 AVGVEWLEGDSTIPTRATANKEVLLCAGAIASPQILQRSGVGNAELLAEFDIPLVHE--- 288
Query: 365 GYNLVHHVGANLKFSILDNGVSDNNGEIDEKGTYLEESNEGLSSMKGNMDEMLNDGRPGR 424
+ VG NL+ D YL+ + S+ + + N + G
Sbjct: 289 ----LPGVGENLQ---------------DHLEMYLQYECKEPVSLYPAL-QWWNQPKIGA 328
Query: 425 SIL--------SNTFNALFSNNNKEEDKMP------------------CGRRSIYARPTN 458
L SN F A ++EE P +
Sbjct: 329 EWLFGGTGVGASNHFEAGGFIRSREEFAWPNIQYHFLPVAINYNGSNAVKEHGFQCHVGS 388
Query: 459 LLPISRGRLVLRSADPFEYPKIHSNYLVMKQDIDVIIEGIRIIQKLTRTKALQKWDFQID 518
+ SRG + ++S DP ++P I NY+ +QD + IRI +++ AL ++ +
Sbjct: 389 MRSPSRGHVRIKSRDPHQHPAILFNYMSHEQDWQEFRDAIRITREIMHQPALDQYRGREI 448
Query: 519 STKMPECKHFEWDSNEYWECYIKTYTLPENHPGGTCKMGPADDYSSVVDAQLRIHGVPNL 578
S + EC+ ++E + +++ + HP GTCKMG D SVVD + R+HG+ L
Sbjct: 449 SPGV-ECQ-----TDEQLDEFVRNHAETAFHPCGTCKMG--YDEMSVVDGEGRVHGLEGL 500
Query: 579 RVMDASIFPTNINSNPIATIIMIAEKGADMVK 610
RV+DASI P I N AT IMI EK ADM++
Sbjct: 501 RVVDASIMPQIITGNLNATTIMIGEKIADMIR 532
>sp|B1J0W6|BETA_ECOLC Choline dehydrogenase OS=Escherichia coli (strain ATCC 8739 / DSM
1576 / Crooks) GN=betA PE=3 SV=1
Length = 556
Score = 209 bits (533), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 181/572 (31%), Positives = 269/572 (47%), Gaps = 77/572 (13%)
Query: 75 EYDFVVVGGGVAGPVVAGRLVENPNWKVLLLEAG-PDE--PTVTSVPGFAASAV-GTHLD 130
++D++++G G AG V+A RL E+PN VLLLEAG PD T +P A + G +
Sbjct: 2 QFDYIIIGAGSAGNVLATRLTEDPNTSVLLLEAGGPDYRFDFRTQMPAALAFPLQGKRYN 61
Query: 131 WKYKTERNKYACLSTGGICEWPRGKMLAGTGAMTGMMYTRSHPSIYDEW-QRQGNPGWGF 189
W Y+TE + E RGK L G+ + GM Y R + D W Q G W +
Sbjct: 62 WAYETEPEPFM---NNRRMECGRGKGLGGSSLINGMCYIRGNALDLDNWAQEPGLENWSY 118
Query: 190 SDVLRYFIKSEHNLNRDQVDPEYHGYDGPLKVQRFSSYP---PIGEDIIKAGKELGYA-S 245
D L Y+ K+E RD + +YHG DGP+ V +S P P+ E +I+AG + GY +
Sbjct: 119 LDCLPYYRKAE---TRDMGENDYHGGDGPVSVT--TSKPGVNPLFEAMIEAGVQAGYPRT 173
Query: 246 GDFNGANQIGVN-FAQVMVDNGVRSSTPRMFLRDKYKQDNLKVQLNAHVMKLNIDPKTKR 304
D NG Q G + + G R+ST R +L + NL ++ H M +I KR
Sbjct: 174 DDLNGYQQEGFGPMDRTVTPQGRRASTARGYLDQAKSRPNLTIR--THAMTDHIIFDGKR 231
Query: 305 ALSVQFKDTNTNEIKTVKAKKEIILTAGAIGSPQLLMLSGVGPKSHLDELGIETISDLRV 364
A+ V++ + ++ A KE++L AGAI SPQ+L SGVG L E I + +
Sbjct: 232 AVGVEWLEGDSTIPTRATANKEVLLCAGAIASPQILQRSGVGNAELLAEFDIPLVHE--- 288
Query: 365 GYNLVHHVGANLKFSILDNGVSDNNGEIDEKGTYLEESNEGLSSMKGNMDEMLNDGRPGR 424
+ VG NL+ D YL+ + S+ + + N + G
Sbjct: 289 ----LPGVGENLQ---------------DHLEMYLQYECKEPVSLYPAL-QWWNQPKIGA 328
Query: 425 SIL--------SNTFNALFSNNNKEEDKMP------------------CGRRSIYARPTN 458
L SN F A ++EE P +
Sbjct: 329 EWLFGGTGVGASNHFEAGGFIRSREEFAWPNIQYHFLPVAINYNGSNAVKEHGFQCHVGS 388
Query: 459 LLPISRGRLVLRSADPFEYPKIHSNYLVMKQDIDVIIEGIRIIQKLTRTKALQKWDFQID 518
+ SRG + ++S DP ++P I NY+ +QD + IRI +++ AL ++ +
Sbjct: 389 MRSPSRGHVRIKSRDPHQHPAILFNYMSHEQDWQEFRDAIRITREIMHQPALDQYRGREI 448
Query: 519 STKMPECKHFEWDSNEYWECYIKTYTLPENHPGGTCKMGPADDYSSVVDAQLRIHGVPNL 578
S + EC+ ++E + +++ + HP GTCKMG D SVVD + R+HG+ L
Sbjct: 449 SPGV-ECQ-----TDEQLDEFVRNHAETAFHPCGTCKMG--YDEMSVVDGEGRVHGLEGL 500
Query: 579 RVMDASIFPTNINSNPIATIIMIAEKGADMVK 610
RV+DASI P I N AT IMI EK ADM++
Sbjct: 501 RVVDASIMPQIITGNLNATTIMIGEKIADMIR 532
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.135 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 241,288,645
Number of Sequences: 539616
Number of extensions: 10794181
Number of successful extensions: 28233
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 44
Number of HSP's that attempted gapping in prelim test: 27114
Number of HSP's gapped (non-prelim): 401
length of query: 614
length of database: 191,569,459
effective HSP length: 124
effective length of query: 490
effective length of database: 124,657,075
effective search space: 61081966750
effective search space used: 61081966750
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 64 (29.3 bits)