Query psy1040
Match_columns 614
No_of_seqs 402 out of 2581
Neff 8.7
Searched_HMMs 46136
Date Fri Aug 16 16:55:56 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1040.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/1040hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1238|consensus 100.0 4E-117 9E-122 933.9 45.4 537 73-614 55-617 (623)
2 PRK02106 choline dehydrogenase 100.0 3.6E-87 7.8E-92 742.9 49.6 514 73-613 3-535 (560)
3 TIGR01810 betA choline dehydro 100.0 9.7E-87 2.1E-91 735.6 49.5 512 77-613 1-530 (532)
4 COG2303 BetA Choline dehydroge 100.0 2.5E-78 5.4E-83 662.8 37.9 514 73-612 5-536 (542)
5 PLN02785 Protein HOTHEAD 100.0 1.1E-75 2.4E-80 645.1 39.8 485 73-613 53-580 (587)
6 TIGR02462 pyranose_ox pyranose 100.0 8.1E-53 1.8E-57 454.4 34.7 478 76-614 1-544 (544)
7 PF00732 GMC_oxred_N: GMC oxid 100.0 3E-52 6.6E-57 428.4 18.5 289 76-372 1-295 (296)
8 PF05199 GMC_oxred_C: GMC oxid 100.0 4.2E-34 9E-39 261.3 12.8 143 461-605 1-144 (144)
9 PRK12845 3-ketosteroid-delta-1 99.5 5.6E-13 1.2E-17 147.7 17.2 59 278-340 225-283 (564)
10 PRK12835 3-ketosteroid-delta-1 99.5 4.1E-13 8.8E-18 149.7 16.0 63 276-341 219-281 (584)
11 PRK07121 hypothetical protein; 99.5 6.6E-13 1.4E-17 146.0 16.8 64 276-342 183-246 (492)
12 PRK12844 3-ketosteroid-delta-1 99.5 2.3E-13 4.9E-18 151.2 13.1 61 277-341 215-275 (557)
13 PRK12837 3-ketosteroid-delta-1 99.5 3.5E-13 7.5E-18 148.6 14.0 61 276-340 180-240 (513)
14 PF00890 FAD_binding_2: FAD bi 99.4 3.1E-12 6.7E-17 138.0 17.3 60 277-340 148-207 (417)
15 PRK06481 fumarate reductase fl 99.4 2.9E-12 6.4E-17 141.0 16.3 59 278-340 198-256 (506)
16 PRK08274 tricarballylate dehyd 99.4 3.7E-12 8E-17 139.4 17.0 68 276-347 137-204 (466)
17 PRK11101 glpA sn-glycerol-3-ph 99.4 6.4E-12 1.4E-16 139.4 18.7 62 280-345 159-220 (546)
18 PRK06452 sdhA succinate dehydr 99.4 4.8E-12 1E-16 140.9 15.5 53 280-335 146-198 (566)
19 PF01266 DAO: FAD dependent ox 99.4 2.8E-12 6E-17 134.8 11.3 60 276-345 153-212 (358)
20 PRK08958 sdhA succinate dehydr 99.3 1E-11 2.2E-16 138.7 15.5 56 279-336 152-207 (588)
21 PRK12834 putative FAD-binding 99.3 1.4E-11 3.1E-16 137.0 16.3 35 74-109 3-37 (549)
22 PRK07843 3-ketosteroid-delta-1 99.3 8.6E-12 1.9E-16 138.7 14.5 64 276-343 214-277 (557)
23 PRK06175 L-aspartate oxidase; 99.3 1.1E-11 2.5E-16 133.6 14.1 54 278-336 137-190 (433)
24 PLN02815 L-aspartate oxidase 99.3 1.2E-11 2.6E-16 137.5 14.2 57 279-336 165-223 (594)
25 PTZ00139 Succinate dehydrogena 99.3 1.4E-11 2.9E-16 138.3 14.3 57 278-336 174-230 (617)
26 TIGR01813 flavo_cyto_c flavocy 99.3 7.5E-12 1.6E-16 135.9 11.9 60 276-338 136-195 (439)
27 PLN00128 Succinate dehydrogena 99.3 1.5E-11 3.3E-16 138.0 14.5 55 280-336 197-251 (635)
28 PRK07395 L-aspartate oxidase; 99.3 1.4E-11 3E-16 136.5 13.7 53 281-336 146-198 (553)
29 PRK07573 sdhA succinate dehydr 99.3 3.3E-11 7.2E-16 135.6 16.0 55 279-336 179-233 (640)
30 PRK09078 sdhA succinate dehydr 99.3 2.5E-11 5.3E-16 136.0 14.7 57 278-336 157-213 (598)
31 PRK06263 sdhA succinate dehydr 99.3 3.3E-11 7.2E-16 133.9 15.0 59 276-336 140-198 (543)
32 PRK08641 sdhA succinate dehydr 99.3 4.9E-11 1.1E-15 133.4 16.1 51 284-336 151-201 (589)
33 PTZ00306 NADH-dependent fumara 99.3 1.7E-11 3.7E-16 146.6 13.0 55 283-338 560-623 (1167)
34 PRK12842 putative succinate de 99.3 3.3E-11 7.2E-16 134.8 14.2 60 278-341 222-281 (574)
35 PRK05945 sdhA succinate dehydr 99.3 4.7E-11 1E-15 133.5 14.7 58 276-336 141-198 (575)
36 PRK06134 putative FAD-binding 99.3 4.5E-11 9.7E-16 133.7 14.5 62 276-341 223-284 (581)
37 TIGR01373 soxB sarcosine oxida 99.3 6E-11 1.3E-15 127.6 14.9 53 49-109 12-65 (407)
38 TIGR02734 crtI_fam phytoene de 99.3 2.6E-10 5.6E-15 126.1 19.7 58 276-341 225-282 (502)
39 PRK07057 sdhA succinate dehydr 99.2 9E-11 1.9E-15 131.3 15.9 55 280-336 158-212 (591)
40 PRK07804 L-aspartate oxidase; 99.2 1.3E-10 2.8E-15 129.0 16.9 59 276-336 150-211 (541)
41 PRK09231 fumarate reductase fl 99.2 7.9E-11 1.7E-15 131.5 14.6 54 280-336 144-197 (582)
42 PRK12843 putative FAD-binding 99.2 6.2E-11 1.3E-15 132.5 13.8 62 276-341 227-288 (578)
43 PRK12839 hypothetical protein; 99.2 5.4E-11 1.2E-15 132.3 13.0 60 277-339 221-280 (572)
44 PRK08626 fumarate reductase fl 99.2 7.6E-11 1.6E-15 133.0 14.3 57 277-336 165-221 (657)
45 PRK07803 sdhA succinate dehydr 99.2 8.4E-11 1.8E-15 132.3 14.4 49 285-336 166-214 (626)
46 PRK06854 adenylylsulfate reduc 99.2 1.5E-10 3.3E-15 129.8 16.1 52 281-335 144-195 (608)
47 TIGR01176 fum_red_Fp fumarate 99.2 1.5E-10 3.3E-15 129.0 15.4 54 280-336 143-196 (580)
48 PRK08275 putative oxidoreducta 99.2 1.8E-10 3.9E-15 128.3 15.8 59 275-335 142-200 (554)
49 TIGR01812 sdhA_frdA_Gneg succi 99.2 1.7E-10 3.7E-15 129.1 15.7 57 277-336 136-192 (566)
50 PRK06069 sdhA succinate dehydr 99.2 1.4E-10 3.1E-15 129.8 14.9 54 280-336 148-201 (577)
51 PRK09077 L-aspartate oxidase; 99.2 2.9E-10 6.4E-15 126.0 16.5 57 279-336 148-208 (536)
52 TIGR00551 nadB L-aspartate oxi 99.2 2.5E-10 5.4E-15 125.4 15.4 50 282-336 141-190 (488)
53 PTZ00383 malate:quinone oxidor 99.2 2.7E-10 5.8E-15 124.0 15.3 52 285-346 232-283 (497)
54 PRK08071 L-aspartate oxidase; 99.2 2.3E-10 4.9E-15 126.1 14.4 50 283-336 142-191 (510)
55 COG0578 GlpA Glycerol-3-phosph 99.2 3.4E-10 7.4E-15 121.3 15.1 77 280-361 174-253 (532)
56 PRK12409 D-amino acid dehydrog 99.2 2.9E-10 6.4E-15 122.3 14.6 34 76-110 2-35 (410)
57 TIGR01377 soxA_mon sarcosine o 99.2 4.3E-10 9.4E-15 119.7 15.3 34 76-110 1-34 (380)
58 PRK08205 sdhA succinate dehydr 99.2 4E-10 8.7E-15 126.1 15.5 60 276-336 146-207 (583)
59 PLN02464 glycerol-3-phosphate 99.1 8.2E-10 1.8E-14 124.2 16.1 64 279-344 241-304 (627)
60 TIGR01811 sdhA_Bsu succinate d 99.1 6.1E-10 1.3E-14 124.7 14.8 53 282-336 145-197 (603)
61 PRK13800 putative oxidoreducta 99.1 8.6E-10 1.9E-14 129.3 16.2 51 283-336 156-206 (897)
62 TIGR02061 aprA adenosine phosp 99.1 1.1E-09 2.3E-14 122.2 15.6 54 281-335 137-191 (614)
63 TIGR01320 mal_quin_oxido malat 99.1 4.3E-10 9.3E-15 122.6 12.3 64 279-346 187-250 (483)
64 PRK11728 hydroxyglutarate oxid 99.1 1E-09 2.2E-14 117.5 14.5 36 75-110 2-38 (393)
65 PF03486 HI0933_like: HI0933-l 99.1 2.9E-11 6.3E-16 128.2 2.5 57 275-339 114-170 (409)
66 TIGR02733 desat_CrtD C-3',4' d 99.1 8.1E-09 1.8E-13 113.8 21.8 61 276-339 238-298 (492)
67 PRK00711 D-amino acid dehydrog 99.1 9.5E-10 2E-14 118.6 13.8 33 77-110 2-34 (416)
68 TIGR03329 Phn_aa_oxid putative 99.1 1.8E-10 3.8E-15 125.7 7.8 37 73-109 22-59 (460)
69 PRK07512 L-aspartate oxidase; 99.1 1E-09 2.2E-14 121.1 13.7 51 281-336 148-198 (513)
70 COG2081 Predicted flavoprotein 99.1 4.7E-10 1E-14 114.4 9.7 37 75-112 3-39 (408)
71 COG1053 SdhA Succinate dehydro 99.1 5.4E-10 1.2E-14 122.8 10.9 54 280-335 149-202 (562)
72 PLN02661 Putative thiazole syn 99.1 1.3E-09 2.8E-14 111.6 12.2 38 73-110 90-127 (357)
73 TIGR03364 HpnW_proposed FAD de 99.0 6.5E-10 1.4E-14 117.7 10.3 34 76-110 1-34 (365)
74 PRK11259 solA N-methyltryptoph 99.0 1.5E-09 3.3E-14 115.3 12.7 35 75-110 3-37 (376)
75 COG3573 Predicted oxidoreducta 99.0 1.1E-09 2.4E-14 107.7 10.3 62 279-343 162-236 (552)
76 TIGR00292 thiazole biosynthesi 99.0 1.5E-09 3.3E-14 108.1 11.2 36 74-110 20-55 (254)
77 COG0579 Predicted dehydrogenas 99.0 4.3E-09 9.3E-14 110.8 14.8 206 74-348 2-223 (429)
78 TIGR02730 carot_isom carotene 99.0 6.7E-08 1.4E-12 106.5 24.7 58 276-341 235-292 (493)
79 PRK04176 ribulose-1,5-biphosph 99.0 2E-09 4.3E-14 107.6 11.1 37 73-110 23-59 (257)
80 PF01946 Thi4: Thi4 family; PD 99.0 1.7E-09 3.7E-14 101.8 9.0 36 74-110 16-51 (230)
81 PRK05257 malate:quinone oxidor 99.0 5.8E-09 1.3E-13 113.9 14.6 38 73-110 3-41 (494)
82 PRK08401 L-aspartate oxidase; 99.0 5E-09 1.1E-13 114.3 13.6 33 76-109 2-34 (466)
83 PRK12266 glpD glycerol-3-phosp 99.0 1.8E-08 3.9E-13 111.1 18.1 57 280-341 165-221 (508)
84 PF12831 FAD_oxidored: FAD dep 99.0 3.9E-10 8.5E-15 121.6 4.3 63 275-345 95-157 (428)
85 KOG0042|consensus 98.9 7.9E-10 1.7E-14 115.2 5.9 87 250-341 207-293 (680)
86 PRK13369 glycerol-3-phosphate 98.9 1.2E-08 2.6E-13 112.4 15.4 56 280-341 165-220 (502)
87 PRK13339 malate:quinone oxidor 98.9 1.6E-08 3.5E-13 109.7 15.7 38 73-110 4-42 (497)
88 COG1233 Phytoene dehydrogenase 98.9 1.3E-08 2.8E-13 111.6 14.2 37 75-112 3-39 (487)
89 COG1635 THI4 Ribulose 1,5-bisp 98.9 1.1E-08 2.4E-13 95.5 11.1 34 74-108 29-62 (262)
90 TIGR02485 CobZ_N-term precorri 98.9 1.5E-08 3.3E-13 109.8 13.9 62 276-342 129-190 (432)
91 PRK10157 putative oxidoreducta 98.9 3.3E-09 7E-14 114.6 7.6 36 74-110 4-39 (428)
92 COG0029 NadB Aspartate oxidase 98.8 2.7E-08 5.9E-13 103.9 11.9 57 275-335 139-196 (518)
93 PRK05192 tRNA uridine 5-carbox 98.8 1.2E-08 2.6E-13 111.8 8.9 35 74-109 3-37 (618)
94 KOG2820|consensus 98.8 3E-08 6.5E-13 98.3 10.5 61 276-343 159-219 (399)
95 PRK13977 myosin-cross-reactive 98.8 9.2E-08 2E-12 104.0 14.9 59 278-336 234-294 (576)
96 COG0644 FixC Dehydrogenases (f 98.7 5.3E-08 1.1E-12 104.2 11.8 38 74-112 2-39 (396)
97 PRK10015 oxidoreductase; Provi 98.7 2.4E-08 5.2E-13 107.8 9.1 36 74-110 4-39 (429)
98 PRK01747 mnmC bifunctional tRN 98.7 3.1E-08 6.7E-13 113.0 9.0 35 75-110 260-294 (662)
99 PF01134 GIDA: Glucose inhibit 98.7 6.3E-08 1.4E-12 100.9 9.0 50 280-338 106-155 (392)
100 COG0665 DadA Glycine/D-amino a 98.7 6.8E-08 1.5E-12 103.1 9.0 37 73-110 2-38 (387)
101 KOG2404|consensus 98.6 4.4E-08 9.5E-13 96.2 5.2 49 284-336 159-207 (477)
102 PLN02985 squalene monooxygenas 98.6 1.4E-06 3E-11 96.0 16.7 36 73-109 41-76 (514)
103 PTZ00363 rab-GDP dissociation 98.6 4.1E-07 9E-12 97.7 12.2 39 73-112 2-40 (443)
104 KOG1298|consensus 98.6 1.8E-07 3.8E-12 94.2 8.0 53 279-336 157-209 (509)
105 KOG2844|consensus 98.5 2E-07 4.4E-12 99.8 8.9 51 276-335 193-243 (856)
106 PRK07364 2-octaprenyl-6-methox 98.5 7.1E-07 1.5E-11 96.2 12.9 37 73-110 16-52 (415)
107 PRK06185 hypothetical protein; 98.5 1.2E-06 2.6E-11 94.3 13.8 60 280-346 119-178 (407)
108 PRK06126 hypothetical protein; 98.5 1.8E-06 3.8E-11 96.6 14.4 37 73-110 5-41 (545)
109 PF06039 Mqo: Malate:quinone o 98.5 2E-06 4.3E-11 90.0 13.2 68 275-346 187-254 (488)
110 PLN02172 flavin-containing mon 98.5 9.4E-07 2E-11 95.9 11.4 37 74-111 9-45 (461)
111 TIGR00275 flavoprotein, HI0933 98.5 2.2E-07 4.7E-12 99.5 6.2 31 79-110 1-31 (400)
112 PF13738 Pyr_redox_3: Pyridine 98.4 2.9E-07 6.2E-12 88.8 5.9 61 275-344 87-147 (203)
113 KOG2415|consensus 98.4 5.5E-07 1.2E-11 91.5 7.7 72 272-345 185-268 (621)
114 PF01494 FAD_binding_3: FAD bi 98.4 1E-06 2.2E-11 92.4 9.7 36 75-111 1-36 (356)
115 COG3380 Predicted NAD/FAD-depe 98.4 1.7E-06 3.7E-11 83.6 10.0 33 77-110 3-35 (331)
116 PRK05675 sdhA succinate dehydr 98.4 2.7E-06 5.9E-11 95.0 12.5 58 277-336 133-190 (570)
117 PRK07045 putative monooxygenas 98.3 1.6E-06 3.5E-11 92.6 9.9 36 74-110 4-39 (388)
118 PRK08244 hypothetical protein; 98.3 3.6E-06 7.7E-11 92.9 12.5 35 75-110 2-36 (493)
119 COG0654 UbiH 2-polyprenyl-6-me 98.3 4.2E-06 9E-11 89.4 12.6 33 75-108 2-34 (387)
120 KOG4254|consensus 98.3 5.5E-07 1.2E-11 92.6 5.3 59 275-341 269-327 (561)
121 TIGR03377 glycerol3P_GlpA glyc 98.3 7.6E-06 1.6E-10 90.8 14.1 63 279-345 137-199 (516)
122 COG1249 Lpd Pyruvate/2-oxoglut 98.3 5.5E-06 1.2E-10 89.0 12.2 37 73-110 2-38 (454)
123 TIGR00136 gidA glucose-inhibit 98.3 3.3E-06 7.1E-11 92.8 10.4 33 76-109 1-33 (617)
124 COG0445 GidA Flavin-dependent 98.3 2E-06 4.3E-11 91.0 8.0 52 280-339 111-162 (621)
125 PRK08243 4-hydroxybenzoate 3-m 98.3 5.8E-06 1.3E-10 88.4 11.6 35 75-110 2-36 (392)
126 PRK06183 mhpA 3-(3-hydroxyphen 98.3 1.9E-05 4.2E-10 88.0 16.0 37 73-110 8-44 (538)
127 TIGR01988 Ubi-OHases Ubiquinon 98.2 1E-05 2.2E-10 86.1 13.2 34 77-111 1-34 (385)
128 KOG2665|consensus 98.2 6.3E-06 1.4E-10 81.2 10.2 211 73-345 46-266 (453)
129 KOG2853|consensus 98.2 4E-05 8.6E-10 76.4 15.8 38 74-111 85-125 (509)
130 TIGR03378 glycerol3P_GlpB glyc 98.2 1.4E-05 3.1E-10 84.5 13.5 58 279-342 272-329 (419)
131 PRK07208 hypothetical protein; 98.2 1.4E-05 3E-10 88.0 14.2 38 74-112 3-40 (479)
132 PRK15317 alkyl hydroperoxide r 98.2 1E-05 2.3E-10 89.6 12.4 60 281-343 398-457 (517)
133 PRK06617 2-octaprenyl-6-methox 98.2 1.1E-05 2.3E-10 85.8 12.0 34 76-110 2-35 (374)
134 KOG2852|consensus 98.2 1.2E-06 2.5E-11 85.2 4.1 64 276-345 154-217 (380)
135 PRK05329 anaerobic glycerol-3- 98.2 4.8E-06 1E-10 88.9 9.1 58 276-339 265-322 (422)
136 PRK06184 hypothetical protein; 98.2 1.3E-05 2.8E-10 88.7 12.8 35 75-110 3-37 (502)
137 PRK07333 2-octaprenyl-6-methox 98.2 1.3E-05 2.8E-10 86.1 12.2 35 76-110 2-37 (403)
138 PRK06847 hypothetical protein; 98.2 6.8E-06 1.5E-10 87.3 9.9 35 75-110 4-38 (375)
139 PLN02697 lycopene epsilon cycl 98.2 1.3E-05 2.8E-10 88.1 11.7 35 73-108 106-140 (529)
140 PRK11445 putative oxidoreducta 98.1 4.1E-05 9E-10 80.6 14.6 33 76-110 2-34 (351)
141 COG0492 TrxB Thioredoxin reduc 98.1 8.7E-06 1.9E-10 83.1 9.0 62 277-344 186-247 (305)
142 PRK07588 hypothetical protein; 98.1 2.2E-05 4.7E-10 84.0 12.1 33 77-110 2-34 (391)
143 TIGR02360 pbenz_hydroxyl 4-hyd 98.1 1.5E-05 3.2E-10 85.3 10.7 35 75-110 2-36 (390)
144 TIGR01816 sdhA_forward succina 98.1 3.2E-05 6.9E-10 86.5 13.6 58 276-336 125-182 (565)
145 TIGR02731 phytoene_desat phyto 98.1 1.8E-05 3.8E-10 86.5 11.2 52 280-333 223-274 (453)
146 PF13450 NAD_binding_8: NAD(P) 98.1 3E-06 6.6E-11 66.1 3.4 32 80-112 1-32 (68)
147 PRK07538 hypothetical protein; 98.1 1.1E-05 2.4E-10 87.0 8.8 33 77-110 2-34 (413)
148 COG2072 TrkA Predicted flavopr 98.0 2.6E-05 5.6E-10 84.4 11.3 37 73-110 6-43 (443)
149 PRK08132 FAD-dependent oxidore 98.0 5.3E-05 1.1E-09 84.8 14.2 37 73-110 21-57 (547)
150 COG2509 Uncharacterized FAD-de 98.0 8.8E-05 1.9E-09 77.2 13.6 50 279-336 182-231 (486)
151 TIGR02352 thiamin_ThiO glycine 98.0 1.5E-05 3.3E-10 83.1 8.3 52 278-339 145-196 (337)
152 PRK06753 hypothetical protein; 98.0 2.2E-05 4.7E-10 83.4 9.0 33 77-110 2-34 (373)
153 PF00743 FMO-like: Flavin-bind 98.0 3.2E-05 7E-10 85.3 10.2 34 77-111 3-36 (531)
154 TIGR03140 AhpF alkyl hydropero 98.0 4.5E-05 9.8E-10 84.5 11.3 57 282-341 400-456 (515)
155 PRK08163 salicylate hydroxylas 97.9 2.6E-05 5.7E-10 83.5 9.1 35 75-110 4-38 (396)
156 TIGR02732 zeta_caro_desat caro 97.9 2.6E-05 5.5E-10 85.5 8.6 60 278-340 227-289 (474)
157 KOG1399|consensus 97.9 4E-05 8.7E-10 82.1 9.5 36 75-111 6-41 (448)
158 PLN00093 geranylgeranyl diphos 97.9 8.1E-06 1.8E-10 88.5 4.2 36 73-109 37-72 (450)
159 TIGR02023 BchP-ChlP geranylger 97.9 8E-06 1.7E-10 87.3 3.7 32 76-108 1-32 (388)
160 TIGR02032 GG-red-SF geranylger 97.9 1.1E-05 2.3E-10 82.4 4.1 34 76-110 1-34 (295)
161 PRK06475 salicylate hydroxylas 97.8 6.1E-05 1.3E-09 80.8 9.3 33 77-110 4-36 (400)
162 TIGR01372 soxA sarcosine oxida 97.8 0.00022 4.7E-09 85.0 14.6 62 279-345 360-421 (985)
163 PTZ00058 glutathione reductase 97.8 2.8E-05 6E-10 86.4 6.4 35 73-108 46-80 (561)
164 PRK06115 dihydrolipoamide dehy 97.8 1.7E-05 3.6E-10 86.9 4.6 33 75-108 3-35 (466)
165 PRK05249 soluble pyridine nucl 97.8 1.8E-05 4E-10 86.6 4.6 37 73-110 3-39 (461)
166 PRK12810 gltD glutamate syntha 97.8 0.00021 4.5E-09 78.4 12.3 38 73-111 141-178 (471)
167 TIGR01316 gltA glutamate synth 97.8 0.0017 3.6E-08 70.8 19.1 38 73-111 131-168 (449)
168 KOG2311|consensus 97.8 5.9E-05 1.3E-09 78.3 7.2 35 73-108 26-60 (679)
169 PRK08020 ubiF 2-octaprenyl-3-m 97.8 2.1E-05 4.5E-10 84.1 4.2 37 73-110 3-39 (391)
170 COG0562 Glf UDP-galactopyranos 97.8 2.5E-05 5.4E-10 77.5 4.3 36 76-112 2-37 (374)
171 TIGR01421 gluta_reduc_1 glutat 97.8 1.8E-05 4E-10 86.1 3.8 34 75-109 2-35 (450)
172 PRK12769 putative oxidoreducta 97.7 0.00033 7.3E-09 79.9 14.1 37 74-111 326-362 (654)
173 PRK08010 pyridine nucleotide-d 97.7 2.3E-05 4.9E-10 85.3 4.4 35 75-110 3-37 (441)
174 PRK07608 ubiquinone biosynthes 97.7 2.4E-05 5.1E-10 83.6 4.3 36 74-110 4-39 (388)
175 PRK08773 2-octaprenyl-3-methyl 97.7 2.7E-05 5.8E-10 83.3 4.4 36 74-110 5-40 (392)
176 TIGR02028 ChlP geranylgeranyl 97.7 2.3E-05 5E-10 83.9 3.8 33 76-109 1-33 (398)
177 PRK06116 glutathione reductase 97.7 2.6E-05 5.7E-10 85.0 4.3 34 74-108 3-36 (450)
178 PRK09126 hypothetical protein; 97.7 2.4E-05 5.2E-10 83.6 3.9 35 75-110 3-37 (392)
179 PRK08013 oxidoreductase; Provi 97.7 2.7E-05 5.8E-10 83.6 4.2 35 75-110 3-37 (400)
180 TIGR01424 gluta_reduc_2 glutat 97.7 2.4E-05 5.3E-10 85.1 3.8 33 75-108 2-34 (446)
181 PRK06467 dihydrolipoamide dehy 97.7 3.2E-05 6.9E-10 84.7 4.6 36 74-110 3-38 (471)
182 PF04820 Trp_halogenase: Trypt 97.7 6.8E-05 1.5E-09 81.5 7.1 51 274-332 158-208 (454)
183 PRK06416 dihydrolipoamide dehy 97.7 2.8E-05 6E-10 85.1 4.1 36 73-109 2-37 (462)
184 PLN02463 lycopene beta cyclase 97.7 3.9E-05 8.5E-10 82.9 5.0 37 73-110 26-62 (447)
185 PRK05714 2-octaprenyl-3-methyl 97.7 3.2E-05 7E-10 83.1 4.2 34 75-109 2-35 (405)
186 PRK07494 2-octaprenyl-6-methox 97.7 3.7E-05 8.1E-10 82.1 4.5 37 73-110 5-41 (388)
187 PRK06370 mercuric reductase; V 97.6 3.8E-05 8.2E-10 84.1 4.4 36 73-109 3-38 (463)
188 PRK07251 pyridine nucleotide-d 97.6 3.8E-05 8.2E-10 83.5 4.2 35 75-110 3-37 (438)
189 PRK12779 putative bifunctional 97.6 0.00072 1.6E-08 79.7 14.9 37 74-111 305-341 (944)
190 TIGR00031 UDP-GALP_mutase UDP- 97.6 4.1E-05 8.9E-10 80.5 4.2 36 76-112 2-37 (377)
191 COG3634 AhpF Alkyl hydroperoxi 97.6 0.00027 5.8E-09 70.8 9.3 60 281-343 401-460 (520)
192 PRK05976 dihydrolipoamide dehy 97.6 4.3E-05 9.3E-10 83.9 4.2 34 74-108 3-36 (472)
193 PRK08849 2-octaprenyl-3-methyl 97.6 4.2E-05 9.2E-10 81.6 4.0 34 75-109 3-36 (384)
194 PRK13748 putative mercuric red 97.6 5E-05 1.1E-09 85.3 4.6 34 74-108 97-130 (561)
195 PRK06292 dihydrolipoamide dehy 97.6 5.5E-05 1.2E-09 82.8 4.6 33 75-108 3-35 (460)
196 PLN02546 glutathione reductase 97.6 5.6E-05 1.2E-09 84.0 4.3 33 74-107 78-110 (558)
197 TIGR01423 trypano_reduc trypan 97.6 6.9E-05 1.5E-09 82.2 4.9 35 74-108 2-36 (486)
198 TIGR01989 COQ6 Ubiquinone bios 97.6 5.9E-05 1.3E-09 81.9 4.2 34 76-110 1-38 (437)
199 TIGR01790 carotene-cycl lycope 97.5 5.9E-05 1.3E-09 80.5 4.0 33 77-110 1-33 (388)
200 TIGR02053 MerA mercuric reduct 97.5 5.8E-05 1.3E-09 82.6 3.9 33 76-109 1-33 (463)
201 PRK12809 putative oxidoreducta 97.5 0.0014 3.1E-08 74.6 15.2 37 74-111 309-345 (639)
202 TIGR01984 UbiH 2-polyprenyl-6- 97.5 6.4E-05 1.4E-09 80.0 4.1 33 77-110 1-34 (382)
203 TIGR01350 lipoamide_DH dihydro 97.5 5.9E-05 1.3E-09 82.6 3.9 32 75-107 1-32 (461)
204 KOG0029|consensus 97.5 6.7E-05 1.5E-09 81.8 4.2 39 73-112 13-51 (501)
205 PTZ00153 lipoamide dehydrogena 97.5 6.8E-05 1.5E-09 84.6 4.3 34 74-108 115-148 (659)
206 PF05834 Lycopene_cycl: Lycope 97.5 6.7E-05 1.5E-09 79.6 4.0 34 77-111 1-36 (374)
207 PRK14694 putative mercuric red 97.5 6.6E-05 1.4E-09 82.2 4.1 36 73-109 4-39 (468)
208 TIGR01292 TRX_reduct thioredox 97.5 6.4E-05 1.4E-09 77.0 3.7 33 76-109 1-33 (300)
209 PRK07190 hypothetical protein; 97.5 7.2E-05 1.6E-09 82.1 4.0 36 74-110 4-39 (487)
210 PRK07818 dihydrolipoamide dehy 97.5 7.2E-05 1.6E-09 81.9 3.9 33 75-108 4-36 (466)
211 PTZ00367 squalene epoxidase; P 97.5 7.5E-05 1.6E-09 83.0 4.0 36 73-109 31-66 (567)
212 PTZ00052 thioredoxin reductase 97.5 7.9E-05 1.7E-09 82.2 4.2 34 74-108 4-37 (499)
213 TIGR03143 AhpF_homolog putativ 97.5 8E-05 1.7E-09 83.2 4.1 35 74-109 3-37 (555)
214 PRK08850 2-octaprenyl-6-methox 97.5 8.4E-05 1.8E-09 79.9 3.8 33 75-108 4-36 (405)
215 PRK06327 dihydrolipoamide dehy 97.5 8.9E-05 1.9E-09 81.4 3.9 33 74-107 3-35 (475)
216 PRK06834 hypothetical protein; 97.4 0.0001 2.2E-09 81.0 4.1 35 75-110 3-37 (488)
217 PLN02507 glutathione reductase 97.4 0.0001 2.2E-09 81.3 3.8 34 73-107 23-56 (499)
218 PRK14727 putative mercuric red 97.4 0.00014 3E-09 80.0 4.5 36 74-110 15-50 (479)
219 PLN02268 probable polyamine ox 97.4 0.00013 2.7E-09 79.3 4.2 36 77-113 2-37 (435)
220 TIGR01789 lycopene_cycl lycope 97.4 0.00012 2.7E-09 77.4 3.8 34 77-110 1-35 (370)
221 PRK11883 protoporphyrinogen ox 97.4 0.00014 2.9E-09 79.4 3.8 35 77-112 2-38 (451)
222 PRK05732 2-octaprenyl-6-methox 97.3 0.00015 3.3E-09 77.5 4.0 34 75-108 3-38 (395)
223 PRK06996 hypothetical protein; 97.3 0.00018 3.8E-09 77.2 4.3 37 73-110 9-49 (398)
224 PF13434 K_oxygenase: L-lysine 97.3 0.00026 5.5E-09 73.9 5.4 36 75-110 2-37 (341)
225 PRK07233 hypothetical protein; 97.3 0.00017 3.6E-09 78.2 4.0 35 77-112 1-35 (434)
226 PRK07236 hypothetical protein; 97.3 0.00017 3.7E-09 77.0 3.9 36 74-110 5-40 (386)
227 PRK09897 hypothetical protein; 97.3 0.0021 4.5E-08 70.9 12.3 36 76-111 2-38 (534)
228 COG1231 Monoamine oxidase [Ami 97.3 0.00023 5E-09 74.5 4.5 39 73-112 5-43 (450)
229 PLN02576 protoporphyrinogen ox 97.3 0.0002 4.2E-09 79.2 4.3 39 74-112 11-49 (496)
230 COG2907 Predicted NAD/FAD-bind 97.3 0.0033 7.3E-08 63.3 12.1 37 74-112 7-43 (447)
231 PRK10262 thioredoxin reductase 97.2 0.00025 5.5E-09 73.6 3.7 61 277-340 192-253 (321)
232 TIGR01438 TGR thioredoxin and 97.2 0.00026 5.6E-09 77.7 3.7 33 75-108 2-34 (484)
233 TIGR00562 proto_IX_ox protopor 97.2 0.00031 6.8E-09 76.8 4.1 37 76-112 3-42 (462)
234 PRK08294 phenol 2-monooxygenas 97.2 0.00034 7.4E-09 79.3 4.5 37 73-110 30-67 (634)
235 PF07992 Pyr_redox_2: Pyridine 97.2 0.00032 7E-09 67.2 3.7 33 77-110 1-33 (201)
236 PRK05335 tRNA (uracil-5-)-meth 97.2 0.00031 6.8E-09 74.3 3.8 35 76-111 3-37 (436)
237 COG3349 Uncharacterized conser 97.2 0.00032 7E-09 74.8 3.8 34 78-112 3-36 (485)
238 PLN02676 polyamine oxidase 97.1 0.00048 1E-08 75.6 4.9 38 74-112 25-63 (487)
239 PRK05868 hypothetical protein; 97.1 0.00037 8.1E-09 73.9 3.9 33 77-110 3-35 (372)
240 PLN02529 lysine-specific histo 97.1 0.00061 1.3E-08 77.5 5.3 39 73-112 158-196 (738)
241 TIGR03197 MnmC_Cterm tRNA U-34 97.1 0.0063 1.4E-07 64.8 12.8 47 278-334 143-189 (381)
242 PLN02568 polyamine oxidase 97.0 0.00055 1.2E-08 75.9 4.6 37 75-112 5-46 (539)
243 PRK12416 protoporphyrinogen ox 97.0 0.00053 1.1E-08 75.1 3.7 36 77-112 3-43 (463)
244 TIGR03452 mycothione_red mycot 96.9 0.00076 1.7E-08 73.5 4.6 31 75-108 2-32 (452)
245 TIGR03315 Se_ygfK putative sel 96.9 0.0007 1.5E-08 79.3 4.4 37 74-111 536-572 (1012)
246 PLN02927 antheraxanthin epoxid 96.9 0.00068 1.5E-08 76.2 4.1 36 73-109 79-114 (668)
247 KOG2614|consensus 96.9 0.00082 1.8E-08 69.5 4.0 34 76-110 3-36 (420)
248 KOG4716|consensus 96.9 0.00083 1.8E-08 67.1 3.8 35 73-108 17-51 (503)
249 KOG2960|consensus 96.9 0.00038 8.3E-09 65.0 1.1 34 75-108 76-110 (328)
250 TIGR00137 gid_trmFO tRNA:m(5)U 96.8 0.00083 1.8E-08 71.5 3.6 33 77-110 2-34 (433)
251 PRK12775 putative trifunctiona 96.8 0.0011 2.4E-08 78.8 4.9 38 74-112 429-466 (1006)
252 PF13454 NAD_binding_9: FAD-NA 96.8 0.014 2.9E-07 53.8 11.2 32 79-110 1-36 (156)
253 PRK12831 putative oxidoreducta 96.8 0.0012 2.5E-08 72.3 4.6 38 73-111 138-175 (464)
254 COG3075 GlpB Anaerobic glycero 96.8 0.00097 2.1E-08 66.6 3.6 35 75-110 2-36 (421)
255 PF06100 Strep_67kDa_ant: Stre 96.8 0.025 5.4E-07 60.5 14.2 53 280-334 217-273 (500)
256 KOG0405|consensus 96.8 0.0015 3.2E-08 65.8 4.5 36 73-109 18-53 (478)
257 PRK06912 acoL dihydrolipoamide 96.7 0.0012 2.6E-08 72.2 3.7 33 77-110 2-34 (458)
258 COG1232 HemY Protoporphyrinoge 96.7 0.0014 3E-08 70.1 3.7 34 78-112 3-38 (444)
259 PRK07846 mycothione reductase; 96.7 0.0014 3.1E-08 71.3 3.9 32 75-109 1-32 (451)
260 COG1252 Ndh NADH dehydrogenase 96.6 0.017 3.8E-07 60.9 11.7 53 275-339 214-266 (405)
261 COG1148 HdrA Heterodisulfide r 96.6 0.0017 3.6E-08 68.2 3.9 37 75-112 124-160 (622)
262 KOG1335|consensus 96.6 0.0021 4.6E-08 65.5 4.3 80 279-370 261-342 (506)
263 PLN02612 phytoene desaturase 96.6 0.0031 6.7E-08 70.7 6.2 38 74-112 92-129 (567)
264 TIGR03219 salicylate_mono sali 96.6 0.0017 3.7E-08 70.0 3.9 33 77-110 2-35 (414)
265 PF00070 Pyr_redox: Pyridine n 96.6 0.0027 5.9E-08 51.1 3.9 33 78-111 2-34 (80)
266 PLN02328 lysine-specific histo 96.5 0.0022 4.8E-08 73.5 4.1 38 74-112 237-274 (808)
267 KOG0685|consensus 96.5 0.0026 5.7E-08 66.8 4.1 40 74-113 20-59 (498)
268 PF00996 GDI: GDP dissociation 96.4 0.0028 6E-08 67.8 3.8 40 73-113 2-41 (438)
269 PRK09853 putative selenate red 96.4 0.003 6.5E-08 73.9 4.3 37 74-111 538-574 (1019)
270 PRK11749 dihydropyrimidine deh 96.4 0.0031 6.7E-08 68.9 4.3 38 73-111 138-175 (457)
271 PRK12778 putative bifunctional 96.3 0.0032 7E-08 73.1 4.4 37 74-111 430-466 (752)
272 PRK12814 putative NADPH-depend 96.3 0.0064 1.4E-07 69.4 6.2 37 74-111 192-228 (652)
273 KOG3855|consensus 96.2 0.0039 8.5E-08 64.3 3.7 38 73-110 34-74 (481)
274 PRK07845 flavoprotein disulfid 96.2 0.0037 8E-08 68.5 3.8 32 77-109 3-34 (466)
275 PLN02487 zeta-carotene desatur 96.2 0.0044 9.6E-08 69.0 4.3 59 279-340 304-365 (569)
276 PLN03000 amine oxidase 96.2 0.0066 1.4E-07 69.8 5.6 38 74-112 183-220 (881)
277 PRK08255 salicylyl-CoA 5-hydro 96.1 0.0039 8.6E-08 72.4 3.7 35 77-111 2-37 (765)
278 PLN02852 ferredoxin-NADP+ redu 96.1 0.0061 1.3E-07 66.5 4.6 39 74-112 25-64 (491)
279 PRK12770 putative glutamate sy 96.1 0.0068 1.5E-07 63.8 4.8 36 75-111 18-53 (352)
280 TIGR01317 GOGAT_sm_gam glutama 96.0 0.0087 1.9E-07 65.8 5.7 37 74-111 142-178 (485)
281 TIGR01318 gltD_gamma_fam gluta 95.9 0.012 2.7E-07 64.3 5.9 37 74-111 140-176 (467)
282 PLN02976 amine oxidase 95.9 0.0074 1.6E-07 72.0 4.3 38 74-112 692-729 (1713)
283 PRK06567 putative bifunctional 95.8 0.0076 1.6E-07 69.8 4.1 35 74-109 382-416 (1028)
284 TIGR01350 lipoamide_DH dihydro 95.8 0.06 1.3E-06 58.9 10.8 33 76-109 171-203 (461)
285 PRK04965 NADH:flavorubredoxin 95.7 0.093 2E-06 55.8 11.6 33 77-110 143-175 (377)
286 KOG1276|consensus 95.6 0.012 2.7E-07 61.0 4.4 39 75-113 11-50 (491)
287 PTZ00188 adrenodoxin reductase 95.6 0.01 2.2E-07 64.0 3.9 37 76-112 40-76 (506)
288 PRK06416 dihydrolipoamide dehy 95.6 0.096 2.1E-06 57.3 11.5 54 280-339 223-276 (462)
289 TIGR02053 MerA mercuric reduct 95.5 0.077 1.7E-06 58.1 10.4 33 77-110 168-200 (463)
290 PRK06327 dihydrolipoamide dehy 95.5 0.096 2.1E-06 57.5 11.0 54 281-339 235-288 (475)
291 PRK09564 coenzyme A disulfide 95.4 0.1 2.2E-06 56.8 10.9 33 76-109 150-182 (444)
292 PRK07818 dihydrolipoamide dehy 95.2 0.15 3.2E-06 55.9 11.6 55 280-339 223-277 (466)
293 TIGR02374 nitri_red_nirB nitri 95.2 0.092 2E-06 61.3 10.3 56 281-345 193-248 (785)
294 PRK06370 mercuric reductase; V 95.2 0.14 3E-06 56.1 11.2 52 281-338 223-274 (463)
295 PRK14989 nitrite reductase sub 95.2 0.11 2.4E-06 60.9 10.8 58 281-345 198-255 (847)
296 PRK12771 putative glutamate sy 95.2 0.017 3.8E-07 64.8 4.0 37 74-111 136-172 (564)
297 TIGR01292 TRX_reduct thioredox 95.1 0.22 4.7E-06 50.7 11.8 57 283-343 190-246 (300)
298 PRK13984 putative oxidoreducta 95.1 0.021 4.7E-07 64.7 4.4 37 74-111 282-318 (604)
299 KOG2403|consensus 95.0 0.02 4.4E-07 61.2 3.7 35 73-108 53-87 (642)
300 PRK10262 thioredoxin reductase 94.7 0.42 9.2E-06 49.5 12.7 32 77-109 148-179 (321)
301 PRK09754 phenylpropionate diox 94.7 0.03 6.5E-07 60.0 4.1 61 275-345 191-251 (396)
302 PRK09564 coenzyme A disulfide 94.4 0.033 7.1E-07 60.6 3.6 61 275-345 196-256 (444)
303 PRK13512 coenzyme A disulfide 94.3 0.036 7.8E-07 60.2 3.7 58 275-345 194-251 (438)
304 COG1206 Gid NAD(FAD)-utilizing 94.1 0.041 8.9E-07 55.3 3.2 33 77-110 5-37 (439)
305 PTZ00318 NADH dehydrogenase-li 93.9 0.057 1.2E-06 58.4 4.3 38 73-111 8-45 (424)
306 COG0493 GltD NADPH-dependent g 93.9 0.057 1.2E-06 58.4 4.1 36 76-112 124-159 (457)
307 PRK12831 putative oxidoreducta 93.7 0.85 1.8E-05 49.9 12.9 31 77-108 283-313 (464)
308 KOG1800|consensus 93.5 0.088 1.9E-06 54.1 4.3 36 76-111 21-57 (468)
309 KOG4405|consensus 93.4 0.087 1.9E-06 54.4 4.2 39 73-112 6-44 (547)
310 TIGR01438 TGR thioredoxin and 93.3 0.42 9E-06 52.6 9.9 56 279-340 229-284 (484)
311 TIGR03169 Nterm_to_SelD pyridi 93.3 0.083 1.8E-06 55.8 4.2 34 78-111 2-37 (364)
312 KOG1439|consensus 93.0 0.06 1.3E-06 55.6 2.4 39 73-112 2-40 (440)
313 COG5044 MRS6 RAB proteins gera 92.8 0.12 2.6E-06 52.9 4.2 38 74-112 5-42 (434)
314 PRK04965 NADH:flavorubredoxin 92.6 0.11 2.5E-06 55.1 4.0 62 276-346 189-250 (377)
315 KOG3851|consensus 92.4 0.12 2.6E-06 51.8 3.5 38 73-110 37-75 (446)
316 KOG0399|consensus 92.1 0.18 3.9E-06 58.3 4.7 38 74-112 1784-1821(2142)
317 KOG2755|consensus 92.0 0.11 2.5E-06 50.6 2.8 33 78-110 2-35 (334)
318 KOG0404|consensus 91.8 0.14 2.9E-06 48.9 3.0 32 76-108 9-40 (322)
319 COG0446 HcaD Uncharacterized N 91.6 0.15 3.3E-06 54.4 3.7 35 76-111 137-171 (415)
320 PF02558 ApbA: Ketopantoate re 91.4 0.19 4E-06 45.7 3.5 31 78-109 1-31 (151)
321 COG0569 TrkA K+ transport syst 91.3 0.19 4E-06 49.3 3.5 33 77-110 2-34 (225)
322 PF01210 NAD_Gly3P_dh_N: NAD-d 91.3 0.18 3.8E-06 46.4 3.2 31 78-109 2-32 (157)
323 COG0686 Ald Alanine dehydrogen 90.4 0.28 6E-06 49.2 3.7 34 75-109 168-201 (371)
324 TIGR03862 flavo_PP4765 unchara 90.1 0.61 1.3E-05 49.2 6.3 88 232-339 57-145 (376)
325 PF02737 3HCDH_N: 3-hydroxyacy 89.6 0.32 6.9E-06 45.8 3.4 31 78-109 2-32 (180)
326 PRK09754 phenylpropionate diox 89.5 0.33 7.2E-06 51.9 3.9 34 77-111 146-179 (396)
327 KOG1336|consensus 89.1 1.7 3.8E-05 46.3 8.5 56 280-342 265-320 (478)
328 PRK05976 dihydrolipoamide dehy 88.7 0.37 8.1E-06 52.9 3.6 33 77-110 182-214 (472)
329 PRK05708 2-dehydropantoate 2-r 88.6 0.4 8.6E-06 49.4 3.5 32 77-109 4-35 (305)
330 PRK07251 pyridine nucleotide-d 88.1 0.46 1E-05 51.6 3.8 33 77-110 159-191 (438)
331 PF03721 UDPG_MGDP_dh_N: UDP-g 88.1 0.53 1.1E-05 44.5 3.7 32 78-110 3-34 (185)
332 PF13738 Pyr_redox_3: Pyridine 87.6 0.56 1.2E-05 44.7 3.7 34 76-110 168-201 (203)
333 PRK06912 acoL dihydrolipoamide 87.6 0.53 1.1E-05 51.5 3.9 33 77-110 172-204 (458)
334 COG1252 Ndh NADH dehydrogenase 87.5 0.36 7.8E-06 51.2 2.4 36 76-111 156-203 (405)
335 TIGR02374 nitri_red_nirB nitri 87.3 0.51 1.1E-05 55.2 3.7 34 78-111 1-36 (785)
336 PRK06467 dihydrolipoamide dehy 87.0 0.56 1.2E-05 51.5 3.7 33 77-110 176-208 (471)
337 PRK07846 mycothione reductase; 86.9 0.59 1.3E-05 50.9 3.8 34 76-110 167-200 (451)
338 TIGR01421 gluta_reduc_1 glutat 86.9 0.58 1.3E-05 51.0 3.7 33 77-110 168-200 (450)
339 PRK06249 2-dehydropantoate 2-r 86.8 0.62 1.3E-05 48.1 3.7 32 77-109 7-38 (313)
340 PRK14989 nitrite reductase sub 86.7 0.64 1.4E-05 54.6 4.1 36 77-112 5-43 (847)
341 COG4529 Uncharacterized protei 86.1 0.77 1.7E-05 49.1 4.0 36 76-111 2-39 (474)
342 PRK06115 dihydrolipoamide dehy 86.0 0.73 1.6E-05 50.5 3.9 33 77-110 176-208 (466)
343 PLN02487 zeta-carotene desatur 85.8 1.2 2.6E-05 49.9 5.5 37 75-112 75-111 (569)
344 PRK06129 3-hydroxyacyl-CoA deh 85.8 0.67 1.5E-05 47.7 3.3 32 77-109 4-35 (308)
345 PF02254 TrkA_N: TrkA-N domain 85.7 0.83 1.8E-05 39.3 3.4 32 78-110 1-32 (116)
346 PF01593 Amino_oxidase: Flavin 85.7 0.51 1.1E-05 50.3 2.5 44 281-333 220-263 (450)
347 COG1249 Lpd Pyruvate/2-oxoglut 85.5 0.89 1.9E-05 49.3 4.2 34 77-111 175-208 (454)
348 PRK06522 2-dehydropantoate 2-r 85.4 0.79 1.7E-05 46.9 3.6 30 78-108 3-32 (304)
349 TIGR03385 CoA_CoA_reduc CoA-di 85.4 0.78 1.7E-05 49.6 3.7 33 77-110 139-171 (427)
350 PRK12921 2-dehydropantoate 2-r 85.2 0.77 1.7E-05 47.1 3.5 29 78-107 3-31 (305)
351 PRK13512 coenzyme A disulfide 85.2 0.79 1.7E-05 49.8 3.7 33 77-110 150-182 (438)
352 PRK05249 soluble pyridine nucl 84.8 0.88 1.9E-05 49.7 3.9 33 77-110 177-209 (461)
353 PRK01438 murD UDP-N-acetylmura 84.7 0.87 1.9E-05 50.1 3.8 33 77-110 18-50 (480)
354 PRK02705 murD UDP-N-acetylmura 84.5 0.92 2E-05 49.6 3.8 33 78-111 3-35 (459)
355 PRK08293 3-hydroxybutyryl-CoA 83.9 0.99 2.2E-05 45.9 3.6 32 77-109 5-36 (287)
356 PRK06292 dihydrolipoamide dehy 83.9 0.99 2.1E-05 49.3 3.8 33 77-110 171-203 (460)
357 TIGR03452 mycothione_red mycot 83.9 0.99 2.1E-05 49.2 3.7 34 76-110 170-203 (452)
358 PRK07066 3-hydroxybutyryl-CoA 83.6 1.1 2.4E-05 46.3 3.7 31 78-109 10-40 (321)
359 PRK09260 3-hydroxybutyryl-CoA 83.5 1 2.2E-05 45.9 3.4 31 78-109 4-34 (288)
360 COG3486 IucD Lysine/ornithine 83.3 1.6 3.5E-05 45.7 4.6 39 73-111 3-41 (436)
361 PRK07819 3-hydroxybutyryl-CoA 83.3 1.1 2.4E-05 45.5 3.6 33 77-110 7-39 (286)
362 TIGR01424 gluta_reduc_2 glutat 83.2 1.1 2.3E-05 48.8 3.7 33 77-110 168-200 (446)
363 TIGR03140 AhpF alkyl hydropero 83.0 1.1 2.5E-05 49.7 3.8 33 77-110 354-386 (515)
364 PF01488 Shikimate_DH: Shikima 83.0 1.2 2.6E-05 39.7 3.3 33 75-108 12-45 (135)
365 PTZ00153 lipoamide dehydrogena 82.7 1.2 2.6E-05 50.7 3.9 33 77-110 314-346 (659)
366 PRK14106 murD UDP-N-acetylmura 82.5 1.2 2.6E-05 48.5 3.7 33 76-109 6-38 (450)
367 TIGR02354 thiF_fam2 thiamine b 82.4 1.3 2.9E-05 42.4 3.6 33 75-108 21-54 (200)
368 PF13241 NAD_binding_7: Putati 82.3 1.1 2.3E-05 37.9 2.6 33 75-108 7-39 (103)
369 PRK04148 hypothetical protein; 82.3 1.3 2.9E-05 39.2 3.2 32 77-110 19-50 (134)
370 TIGR03143 AhpF_homolog putativ 82.0 1.3 2.8E-05 49.8 3.7 33 77-110 145-177 (555)
371 PLN02507 glutathione reductase 81.9 1.3 2.8E-05 48.9 3.7 33 77-110 205-237 (499)
372 PRK06719 precorrin-2 dehydroge 81.9 1.5 3.2E-05 40.3 3.5 30 76-106 14-43 (157)
373 PRK07845 flavoprotein disulfid 81.8 1.4 3.1E-05 48.2 4.0 33 77-110 179-211 (466)
374 PRK06116 glutathione reductase 81.8 1.4 3E-05 48.0 3.9 33 77-110 169-201 (450)
375 PRK06718 precorrin-2 dehydroge 81.8 1.5 3.2E-05 42.1 3.6 31 76-107 11-41 (202)
376 PRK14620 NAD(P)H-dependent gly 81.4 1.3 2.9E-05 45.9 3.5 30 78-108 3-32 (326)
377 PRK15317 alkyl hydroperoxide r 81.4 1.4 3E-05 49.0 3.7 33 77-110 353-385 (517)
378 PRK07530 3-hydroxybutyryl-CoA 81.2 1.4 3.1E-05 44.9 3.5 32 77-109 6-37 (292)
379 PRK08229 2-dehydropantoate 2-r 81.1 1.4 3.1E-05 45.9 3.5 31 77-108 4-34 (341)
380 PTZ00058 glutathione reductase 81.1 1.4 3E-05 49.3 3.6 33 77-110 239-271 (561)
381 PLN02546 glutathione reductase 80.4 1.6 3.4E-05 49.0 3.7 33 77-110 254-286 (558)
382 PRK08010 pyridine nucleotide-d 80.3 1.7 3.8E-05 47.1 4.0 33 77-110 160-192 (441)
383 PRK12475 thiamine/molybdopteri 80.0 1.7 3.6E-05 45.4 3.5 35 75-110 24-59 (338)
384 PTZ00318 NADH dehydrogenase-li 80.0 1.7 3.8E-05 46.9 3.8 34 77-110 175-221 (424)
385 PRK06035 3-hydroxyacyl-CoA deh 79.9 1.7 3.7E-05 44.3 3.5 31 78-109 6-36 (291)
386 PRK07688 thiamine/molybdopteri 79.9 1.7 3.8E-05 45.3 3.6 35 75-110 24-59 (339)
387 PRK13748 putative mercuric red 79.6 1.7 3.7E-05 48.9 3.7 31 77-108 272-302 (561)
388 COG1893 ApbA Ketopantoate redu 79.5 1.8 3.9E-05 44.5 3.6 32 78-110 3-34 (307)
389 PRK14618 NAD(P)H-dependent gly 79.2 1.9 4E-05 44.9 3.6 31 77-108 6-36 (328)
390 COG1748 LYS9 Saccharopine dehy 79.2 2 4.3E-05 45.3 3.8 33 77-110 3-36 (389)
391 PRK15116 sulfur acceptor prote 78.5 2 4.3E-05 43.1 3.4 35 75-110 30-65 (268)
392 PRK14694 putative mercuric red 78.2 2 4.3E-05 47.1 3.7 31 77-108 180-210 (468)
393 PRK14727 putative mercuric red 78.1 2 4.3E-05 47.3 3.6 31 77-108 190-220 (479)
394 cd01075 NAD_bind_Leu_Phe_Val_D 78.1 2.3 4.9E-05 40.8 3.6 31 77-108 30-60 (200)
395 PRK05808 3-hydroxybutyryl-CoA 77.8 2 4.4E-05 43.6 3.3 31 77-108 5-35 (282)
396 PRK12770 putative glutamate sy 77.8 2 4.3E-05 45.1 3.4 32 77-109 174-206 (352)
397 TIGR01316 gltA glutamate synth 77.7 2.1 4.6E-05 46.6 3.7 33 77-110 274-306 (449)
398 PLN02612 phytoene desaturase 77.6 3.3 7E-05 46.6 5.2 46 281-333 319-364 (567)
399 cd01483 E1_enzyme_family Super 77.4 2.5 5.4E-05 37.9 3.4 32 78-110 2-34 (143)
400 cd01487 E1_ThiF_like E1_ThiF_l 77.3 2.5 5.4E-05 39.5 3.5 31 78-109 2-33 (174)
401 cd01080 NAD_bind_m-THF_DH_Cycl 77.1 3.1 6.7E-05 38.6 4.0 33 75-108 44-77 (168)
402 TIGR01423 trypano_reduc trypan 77.0 2.4 5.1E-05 46.7 3.8 33 77-110 189-224 (486)
403 TIGR01470 cysG_Nterm siroheme 76.9 2.5 5.4E-05 40.7 3.5 30 77-107 11-40 (205)
404 PF00899 ThiF: ThiF family; I 76.7 2.2 4.9E-05 37.9 2.9 34 76-110 3-37 (135)
405 KOG3923|consensus 76.4 4.1 8.8E-05 40.9 4.8 36 75-110 3-44 (342)
406 cd05311 NAD_bind_2_malic_enz N 76.4 2.3 4.9E-05 41.7 3.1 32 77-109 27-61 (226)
407 PRK06130 3-hydroxybutyryl-CoA 76.2 2.5 5.4E-05 43.5 3.5 32 77-109 6-37 (311)
408 PRK00094 gpsA NAD(P)H-dependen 76.2 2.5 5.5E-05 43.6 3.6 32 77-109 3-34 (325)
409 PTZ00052 thioredoxin reductase 76.1 2.3 5E-05 47.0 3.5 31 77-108 184-214 (499)
410 KOG2495|consensus 75.8 1.5 3.4E-05 46.0 1.8 35 76-110 219-266 (491)
411 TIGR01763 MalateDH_bact malate 75.6 2.8 6E-05 43.1 3.6 30 78-108 4-34 (305)
412 PRK07233 hypothetical protein; 75.6 3.6 7.7E-05 44.3 4.7 54 278-340 206-259 (434)
413 PRK12548 shikimate 5-dehydroge 75.5 2.6 5.7E-05 42.9 3.4 32 77-109 128-160 (289)
414 PLN02545 3-hydroxybutyryl-CoA 75.2 2.9 6.3E-05 42.7 3.7 31 78-109 7-37 (295)
415 PRK12549 shikimate 5-dehydroge 75.1 2.9 6.3E-05 42.5 3.6 33 76-109 128-161 (284)
416 TIGR00518 alaDH alanine dehydr 75.1 2.7 5.9E-05 44.4 3.5 32 76-108 168-199 (370)
417 TIGR03026 NDP-sugDHase nucleot 74.7 3.2 6.8E-05 44.7 4.0 32 78-110 3-34 (411)
418 TIGR02356 adenyl_thiF thiazole 74.5 3.2 7E-05 39.8 3.6 35 75-110 21-56 (202)
419 COG2072 TrkA Predicted flavopr 74.3 3.5 7.5E-05 44.8 4.1 35 76-111 176-210 (443)
420 PF13478 XdhC_C: XdhC Rossmann 74.2 3.7 8E-05 36.7 3.6 32 78-110 1-32 (136)
421 TIGR02279 PaaC-3OHAcCoADH 3-hy 73.7 3 6.5E-05 46.0 3.5 32 78-110 8-39 (503)
422 PF01262 AlaDh_PNT_C: Alanine 73.4 3.4 7.5E-05 38.3 3.4 33 76-109 21-53 (168)
423 PRK11064 wecC UDP-N-acetyl-D-m 72.9 3.5 7.6E-05 44.4 3.7 32 78-110 6-37 (415)
424 PRK08328 hypothetical protein; 72.8 3.5 7.6E-05 40.5 3.4 34 75-109 27-61 (231)
425 PRK14619 NAD(P)H-dependent gly 72.5 3.4 7.3E-05 42.5 3.4 32 77-109 6-37 (308)
426 PRK11730 fadB multifunctional 72.4 3.5 7.6E-05 47.7 3.8 33 77-110 315-347 (715)
427 PLN02172 flavin-containing mon 72.3 3.6 7.7E-05 45.0 3.7 32 77-109 206-237 (461)
428 TIGR02355 moeB molybdopterin s 72.1 3.9 8.6E-05 40.4 3.6 35 75-110 24-59 (240)
429 cd05292 LDH_2 A subgroup of L- 71.6 4 8.6E-05 42.0 3.7 33 77-110 2-36 (308)
430 TIGR01915 npdG NADPH-dependent 71.5 4.2 9E-05 39.5 3.6 31 78-109 3-34 (219)
431 PRK02472 murD UDP-N-acetylmura 71.3 3.7 8E-05 44.6 3.5 31 78-109 8-38 (447)
432 COG1250 FadB 3-hydroxyacyl-CoA 71.2 4.2 9.2E-05 41.5 3.6 31 78-109 6-36 (307)
433 TIGR02437 FadB fatty oxidation 71.2 3.8 8.3E-05 47.3 3.7 33 77-110 315-347 (714)
434 COG3486 IucD Lysine/ornithine 71.1 11 0.00024 39.6 6.7 57 282-341 290-347 (436)
435 PLN02520 bifunctional 3-dehydr 71.1 3.9 8.4E-05 45.5 3.6 31 77-108 381-411 (529)
436 PRK08268 3-hydroxy-acyl-CoA de 70.8 4 8.7E-05 45.1 3.7 32 78-110 10-41 (507)
437 COG3075 GlpB Anaerobic glycero 70.8 3.5 7.6E-05 42.0 2.8 58 276-339 264-321 (421)
438 cd05291 HicDH_like L-2-hydroxy 70.4 4.8 0.0001 41.4 3.9 32 78-110 3-36 (306)
439 KOG2018|consensus 70.2 4.5 9.8E-05 40.7 3.4 30 75-106 75-105 (430)
440 cd00401 AdoHcyase S-adenosyl-L 70.2 4.3 9.3E-05 43.4 3.6 34 76-110 203-236 (413)
441 PRK08644 thiamine biosynthesis 70.1 4.3 9.4E-05 39.3 3.3 34 75-109 28-62 (212)
442 COG1004 Ugd Predicted UDP-gluc 70.1 4.3 9.4E-05 42.5 3.4 32 78-110 3-34 (414)
443 PRK08223 hypothetical protein; 70.1 4.3 9.3E-05 41.0 3.4 35 75-110 27-62 (287)
444 PRK07531 bifunctional 3-hydrox 69.5 4.5 9.6E-05 44.7 3.7 32 77-109 6-37 (495)
445 TIGR03736 PRTRC_ThiF PRTRC sys 69.2 5.4 0.00012 39.4 3.8 35 74-108 10-54 (244)
446 cd00757 ThiF_MoeB_HesA_family 69.1 4.7 0.0001 39.4 3.4 34 75-109 21-55 (228)
447 KOG2304|consensus 69.0 4.9 0.00011 38.7 3.2 34 76-110 12-45 (298)
448 TIGR02853 spore_dpaA dipicolin 68.9 4.6 0.0001 41.1 3.4 33 76-109 152-184 (287)
449 PRK05690 molybdopterin biosynt 68.8 5 0.00011 39.8 3.5 34 75-109 32-66 (245)
450 COG3976 Uncharacterized protei 68.5 3 6.6E-05 35.8 1.6 34 10-51 99-132 (135)
451 PRK08017 oxidoreductase; Provi 68.5 5.5 0.00012 39.3 3.8 31 78-109 5-36 (256)
452 PRK11749 dihydropyrimidine deh 68.5 4.8 0.0001 43.9 3.7 32 77-109 275-307 (457)
453 cd01339 LDH-like_MDH L-lactate 68.0 5.1 0.00011 41.1 3.5 32 78-110 1-33 (300)
454 COG3634 AhpF Alkyl hydroperoxi 67.5 4.4 9.6E-05 41.5 2.8 35 75-110 354-388 (520)
455 PTZ00082 L-lactate dehydrogena 67.4 6.2 0.00013 40.8 4.0 33 77-110 8-41 (321)
456 PLN02353 probable UDP-glucose 67.3 5.3 0.00011 43.7 3.6 34 77-110 3-37 (473)
457 TIGR02441 fa_ox_alpha_mit fatt 67.3 5 0.00011 46.5 3.6 33 77-110 337-369 (737)
458 PRK06223 malate dehydrogenase; 67.3 5.7 0.00012 40.8 3.7 32 77-109 4-36 (307)
459 cd01486 Apg7 Apg7 is an E1-lik 67.1 5.9 0.00013 40.3 3.6 32 78-110 2-34 (307)
460 TIGR00507 aroE shikimate 5-deh 67.0 5.8 0.00012 39.9 3.6 33 76-109 118-150 (270)
461 cd05191 NAD_bind_amino_acid_DH 67.0 7.4 0.00016 31.5 3.6 31 77-107 25-55 (86)
462 PRK09496 trkA potassium transp 66.6 5.4 0.00012 43.4 3.6 33 77-110 2-34 (453)
463 cd01484 E1-2_like Ubiquitin ac 66.5 5.6 0.00012 39.1 3.3 30 78-108 2-32 (234)
464 TIGR01381 E1_like_apg7 E1-like 66.3 5.9 0.00013 44.4 3.7 35 75-110 338-373 (664)
465 PRK07417 arogenate dehydrogena 66.0 5.5 0.00012 40.3 3.3 30 78-108 3-32 (279)
466 cd01485 E1-1_like Ubiquitin ac 65.5 6.6 0.00014 37.5 3.5 34 75-109 19-53 (198)
467 cd01078 NAD_bind_H4MPT_DH NADP 65.4 6.9 0.00015 37.1 3.7 32 76-108 29-61 (194)
468 PRK06505 enoyl-(acyl carrier p 65.4 7.3 0.00016 39.1 4.0 31 77-108 9-42 (271)
469 PRK10669 putative cation:proto 65.3 5.8 0.00013 44.5 3.6 35 75-110 417-451 (558)
470 PF13434 K_oxygenase: L-lysine 65.3 13 0.00029 38.8 6.0 49 281-332 290-338 (341)
471 TIGR03376 glycerol3P_DH glycer 65.1 6.2 0.00013 41.2 3.5 29 78-107 2-38 (342)
472 PRK14027 quinate/shikimate deh 64.8 6.8 0.00015 39.7 3.7 31 77-108 129-160 (283)
473 PRK08177 short chain dehydroge 64.6 8.2 0.00018 37.3 4.1 32 78-110 4-36 (225)
474 PRK07326 short chain dehydroge 64.4 7.6 0.00017 37.7 3.9 30 78-108 9-39 (237)
475 PF03446 NAD_binding_2: NAD bi 64.3 6.7 0.00015 36.1 3.3 32 77-109 3-34 (163)
476 PF03807 F420_oxidored: NADP o 64.2 7.9 0.00017 31.8 3.4 32 78-110 2-37 (96)
477 PRK06153 hypothetical protein; 64.0 7.8 0.00017 40.8 3.9 34 75-109 176-210 (393)
478 PRK12550 shikimate 5-dehydroge 63.9 6.8 0.00015 39.5 3.4 32 77-109 124-156 (272)
479 PRK07831 short chain dehydroge 63.7 7.7 0.00017 38.5 3.8 33 76-109 18-52 (262)
480 PRK08762 molybdopterin biosynt 63.6 7.1 0.00015 41.4 3.7 34 75-109 135-169 (376)
481 cd01492 Aos1_SUMO Ubiquitin ac 63.5 7.5 0.00016 37.1 3.5 34 75-109 21-55 (197)
482 TIGR01809 Shik-DH-AROM shikima 63.4 7.2 0.00016 39.6 3.5 32 76-108 126-158 (282)
483 PRK00258 aroE shikimate 5-dehy 63.4 6.9 0.00015 39.6 3.4 33 76-109 124-157 (278)
484 TIGR00936 ahcY adenosylhomocys 63.4 7.4 0.00016 41.5 3.7 34 76-110 196-229 (406)
485 PRK11154 fadJ multifunctional 63.2 6.9 0.00015 45.3 3.7 32 77-109 311-343 (708)
486 PRK06057 short chain dehydroge 63.1 7.9 0.00017 38.2 3.7 32 77-109 9-41 (255)
487 COG2085 Predicted dinucleotide 62.7 7.9 0.00017 37.1 3.4 30 78-108 4-33 (211)
488 PRK04308 murD UDP-N-acetylmura 62.7 8 0.00017 42.0 4.0 33 77-110 7-39 (445)
489 cd01490 Ube1_repeat2 Ubiquitin 62.4 7.2 0.00016 41.9 3.4 32 78-110 2-39 (435)
490 cd00755 YgdL_like Family of ac 62.4 7.6 0.00016 38.1 3.4 34 75-109 11-45 (231)
491 cd01488 Uba3_RUB Ubiquitin act 62.3 7.8 0.00017 39.4 3.5 30 78-108 2-32 (291)
492 PRK06720 hypothetical protein; 62.0 10 0.00022 35.2 4.0 33 76-109 17-50 (169)
493 PRK08306 dipicolinate synthase 61.9 7.9 0.00017 39.6 3.5 34 75-109 152-185 (296)
494 TIGR01505 tartro_sem_red 2-hyd 61.8 7.1 0.00015 39.7 3.2 31 78-109 2-32 (291)
495 PRK08594 enoyl-(acyl carrier p 61.5 9.4 0.0002 37.9 4.0 31 77-108 9-42 (257)
496 PRK12778 putative bifunctional 61.3 7.1 0.00015 45.6 3.5 33 77-110 572-605 (752)
497 PRK07523 gluconate 5-dehydroge 61.1 8.9 0.00019 37.8 3.7 31 77-108 12-43 (255)
498 PRK07878 molybdopterin biosynt 61.1 7.8 0.00017 41.4 3.5 35 75-110 42-77 (392)
499 PRK05476 S-adenosyl-L-homocyst 61.0 8.7 0.00019 41.3 3.7 33 77-110 214-246 (425)
500 TIGR02440 FadJ fatty oxidation 61.0 7.9 0.00017 44.7 3.7 32 77-109 306-338 (699)
No 1
>KOG1238|consensus
Probab=100.00 E-value=4.2e-117 Score=933.93 Aligned_cols=537 Identities=40% Similarity=0.658 Sum_probs=491.2
Q ss_pred CCcccEEEECCCCchHHHHHHHhcCCCCeEEEecCCCCCCCccccccccccccCCcccccceecccccccccC-CCeeee
Q psy1040 73 QEEYDFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGPDEPTVTSVPGFAASAVGTHLDWKYKTERNKYACLST-GGICEW 151 (614)
Q Consensus 73 ~~~yDvIVVGsG~aG~~~A~~Lae~~G~~VLlLEaG~~~~~~~~~p~~~~~~~~~~~~w~~~~~~~~~~~~~~-~~~~~~ 151 (614)
..+|||||||||+|||++|.||||+|.|+|||||||+.++...++|.+...++.+.++|.|.++|++.+|+.+ +++|.|
T Consensus 55 ~~~yDyIVVGgGtAGcvlAarLSEn~~~~VLLLEaGg~~~~~~~~p~~~~~~q~s~~dw~y~t~Ps~~ac~~m~~~~c~w 134 (623)
T KOG1238|consen 55 DSSYDYIVVGGGTAGCVLAARLSENPNWSVLLLEAGGDPPLYSDPPLLAANLQLSLYDWSYHTEPSQHACLAMSEDRCYW 134 (623)
T ss_pred ccCCCEEEECCCchhHHHHHhhccCCCceEEEEecCCCCcccccchHHHHHhccccccccCcCccChhhhhhhcCCceec
Confidence 5689999999999999999999999999999999999998888999888888999999999999999999999 999999
Q ss_pred cCceeeccccccCCceeecCChhhHHHHHHcCCCCCChhhHHHHHHhhhcCCCCCCCC-CCccCCCCCeeeeeCCCCCch
Q psy1040 152 PRGKMLAGTGAMTGMMYTRSHPSIYDEWQRQGNPGWGFSDVLRYFIKSEHNLNRDQVD-PEYHGYDGPLKVQRFSSYPPI 230 (614)
Q Consensus 152 ~~g~~lGGsS~~n~~~~~r~~~~d~~~w~~~g~~~w~~~~l~~y~~~~e~~~~~~~~~-~~~~~~~g~l~v~~~~~~~~~ 230 (614)
+|||+|||+|.+|+|+|.|+++.|||+|++.|+++|+|++++|||+|+|+........ + +|+..|++.++...+..+.
T Consensus 135 pRGrVLGGsS~iN~m~Y~RG~r~Dyd~W~~~gnpgW~y~~vl~yf~k~E~~~~~~~~~~~-y~~~~g~~~ve~~~~~~~~ 213 (623)
T KOG1238|consen 135 PRGRVLGGSSVLNAMFYVRGNRRDYDRWAAEGNPGWSYDEVLPYFKKSEDKVVPDPELTP-YHGAGGPLLVEAGVYPNNL 213 (623)
T ss_pred CccceecccccccceEEecCCccchHHHHHhcCCCCCHHHHHHHHHHHhhccCCCcccCc-ccccCCcceeccccccCch
Confidence 9999999999999999999999999999999999999999999999999987665443 4 8999999999999999999
Q ss_pred hHHHHHHHHHcCCCcCCCCCCCcceeEEeeccccCCcccccccccchhhhc-CCCeEEEcccEEEEEEEcCCCCeEEEEE
Q psy1040 231 GEDIIKAGKELGYASGDFNGANQIGVNFAQVMVDNGVRSSTPRMFLRDKYK-QDNLKVQLNAHVMKLNIDPKTKRALSVQ 309 (614)
Q Consensus 231 ~~~~~~a~~~~G~~~~d~~~~~~~g~~~~~~~~~~g~r~s~~~~~L~~~~~-~~n~~I~~~~~V~~I~~d~~~~ra~GV~ 309 (614)
...|.++.+++|.+..|+||..+.|+...+.++++|.|+++.++|+.++.. |+|+++..++.|++|++|+.++++.||+
T Consensus 214 ~~~~~~ag~e~G~~~~D~nG~~~tg~~~l~~t~~~g~R~s~~~a~l~~~~~~R~NL~~~~~~~vtrvl~D~~~~~a~gv~ 293 (623)
T KOG1238|consen 214 FTAFHRAGTEIGGSIFDRNGERHTGASLLQYTIRNGIRVSLAKAYLKPIRLTRPNLHISRNAAVTRVLIDPAGKRAKGVE 293 (623)
T ss_pred hhHhHHhHHhcCCCccCCCCccccchhhhhccccCCEEEEehhhhhhhhhccCccccccccceEEEEEEcCCCceEEEEE
Confidence 999999999999888899999999999999999999999999999999987 8999999999999999999889999999
Q ss_pred EEeCCCCceEEEEeccEEEEccCCCChHHHHHHhCCCCchhhhhcCCCcccccc-ccccccccccCceEEEEecCCCCCC
Q psy1040 310 FKDTNTNEIKTVKAKKEIILTAGAIGSPQLLMLSGVGPKSHLDELGIETISDLR-VGYNLVHHVGANLKFSILDNGVSDN 388 (614)
Q Consensus 310 ~~~~~~g~~~~v~A~k~VVlaaG~i~sp~LLl~SGig~~~~l~~~gi~~~~dlp-VG~nl~dH~~~~~~~~~~~~~~~~~ 388 (614)
+.+.. |+.++|+|+||||||||+|+||||||+|||||++||+++|||++.||| ||+|||||+..+++++..+ +....
T Consensus 294 ~~~~~-~~~~~v~a~kEVILSAGAi~SPQLLMLSGIGP~~~L~~~gIpvv~dLP~VG~nLqDH~~~~~~~~~~~-~~~~~ 371 (623)
T KOG1238|consen 294 FVRDG-GKEHTVKARKEVILSAGAINSPQLLMLSGIGPADHLKKLGIPVVLDLPGVGQNLQDHPMNPGFVFSTN-PVELS 371 (623)
T ss_pred EEecC-ceeeeecccceEEEeccccCCHHHHHHcCCCcHHHHHhcCCCeeccCcccccccccccccceeeecCC-Ccccc
Confidence 98763 689999999999999999999999999999999999999999999999 9999999999765555444 43332
Q ss_pred Ccc---hHHHHhHHHhcCCCccccccccc--cccc-c-----c-CCCcceeecc--cccc-------ccccccccccCCC
Q psy1040 389 NGE---IDEKGTYLEESNEGLSSMKGNMD--EMLN-D-----G-RPGRSILSNT--FNAL-------FSNNNKEEDKMPC 447 (614)
Q Consensus 389 ~~~---~~~~~~~~~~~~~G~~~~~~~~~--~f~~-~-----~-~p~~~~~~~~--~~~~-------~~~~~~~~~~~~~ 447 (614)
..+ +..+.+|+ ..+.||+...+ ++ +|++ . . +||+|+++.+ ...+ ...++|+..+..+
T Consensus 372 ~~~~~~~~~~~~yl-~~~~G~~~~~~-~e~~~f~~t~~~~~~~~~PD~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~ 449 (623)
T KOG1238|consen 372 LIRLVGITTVGQYL-EGGSGPLASPG-VETLGFINTVSSNLSLDWPDIELHFVAGSLSSDGLTALRKALGEIYQALFGEL 449 (623)
T ss_pred ccccccchHHHHHH-HcCCCCcccCc-ceeeEEeccccccCcCCCCCeeEEeccccccccchhhhhhhcchHHHHhhhhh
Confidence 222 36678898 88999999887 56 8888 1 2 9999988732 2111 1224555566555
Q ss_pred C-CCceEEeecccccCcceEEEeccCCCCCCCEEEeCCCCCHHHHHHHHHHHHHHHHHHhchhhhhcccccccccCCCCC
Q psy1040 448 G-RRSIYARPTNLLPISRGRLVLRSADPFEYPKIHSNYLVMKQDIDVIIEGIRIIQKLTRTKALQKWDFQIDSTKMPECK 526 (614)
Q Consensus 448 ~-~~~~~~~~~~~~p~s~g~v~l~s~d~~~~P~i~~~y~~~~~D~~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~p~~~ 526 (614)
. ...+.|+..+++|+|+|+|+|+|+||.+.|+|++||+.+|+|++++++|++.+.++.++++|+++++++...++|+|+
T Consensus 450 ~~~~~~~i~~~~l~P~SrG~l~L~s~nP~~~P~I~~NY~~~p~Dv~~~vegi~~~~~l~~s~af~~~~~r~~~~~~~~c~ 529 (623)
T KOG1238|consen 450 TNSDSFVIFPKLLRPKSRGRLKLRSTNPRDNPLITPNYFTHPEDVATLVEGIRTIIRLSNSKAFQRFGARLWKKPVPGCD 529 (623)
T ss_pred hcCceeEEeehhcCCCccceEEecCCCCCcCceeccCcCCCHHHHHHHHHHHHHHHHHHcCHHHHHhcchhccccCCCcc
Confidence 5 566889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHhccCCCcccccccccccCCCCCCCccCCCCcEecCCCcEEeccCCCCCCCCcchHHHHHHHHHHHH
Q psy1040 527 HFEWDSNEYWECYIKTYTLPENHPGGTCKMGPADDYSSVVDAQLRIHGVPNLRVMDASIFPTNINSNPIATIIMIAEKGA 606 (614)
Q Consensus 527 ~~~~~s~~~~~~~i~~~~~~~~H~~GT~rMG~~~d~~~VVD~~lrV~gv~nL~V~DaSv~P~~~~~Np~~ti~aia~r~A 606 (614)
.+.+.||+||+|++|..+.|.||++|||+|||+.||++|||+++|||||+||||+||||||.++++||++|+||||||+|
T Consensus 530 ~~~~~sd~yw~c~~R~~~~TiyH~~GtckMGp~~D~~aVVD~~lrV~Gv~~LRVVDaSimP~~psgN~nA~v~MIgek~a 609 (623)
T KOG1238|consen 530 LLAFLSDAYWECFCRHTVVTIYHYSGTCKMGPSSDPTAVVDPQLRVHGVRGLRVVDASIMPESPSGNPNAPVMMIGEKAA 609 (623)
T ss_pred cccCCCHHHHHHHHHhccceeeccCCceEeCCccCCCcccCCcceeccccCceEeeccccCCCCCCCccHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhC
Q psy1040 607 DMVKESWR 614 (614)
Q Consensus 607 d~I~~~~~ 614 (614)
|+||++|.
T Consensus 610 d~Ik~~~~ 617 (623)
T KOG1238|consen 610 DMIKEEWL 617 (623)
T ss_pred HHHHHHhh
Confidence 99999983
No 2
>PRK02106 choline dehydrogenase; Validated
Probab=100.00 E-value=3.6e-87 Score=742.86 Aligned_cols=514 Identities=35% Similarity=0.536 Sum_probs=413.2
Q ss_pred CCcccEEEECCCCchHHHHHHHhcCCCCeEEEecCCCCC---CCccccccccccc-cCCcccccceecccccccccC-CC
Q psy1040 73 QEEYDFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGPDE---PTVTSVPGFAASA-VGTHLDWKYKTERNKYACLST-GG 147 (614)
Q Consensus 73 ~~~yDvIVVGsG~aG~~~A~~Lae~~G~~VLlLEaG~~~---~~~~~~p~~~~~~-~~~~~~w~~~~~~~~~~~~~~-~~ 147 (614)
..+|||||||||++|+++|.||||++|++|||||+|+.. ......|...... ....++|.|.+.|++ .. ++
T Consensus 3 ~~~~D~iIVG~G~aG~vvA~rLae~~g~~VlvlEaG~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~p~~----~~~~~ 78 (560)
T PRK02106 3 TMEYDYIIIGAGSAGCVLANRLSEDPDVSVLLLEAGGPDYRWDFFIQMPAALAFPLQGKRYNWAYETEPEP----HMNNR 78 (560)
T ss_pred CCcCcEEEECCcHHHHHHHHHHHhCCCCeEEEecCCCcccCCCcceeCcHHHHHhcCCCceeeceecccCC----CCCCC
Confidence 346999999999999999999999559999999999753 2233455433222 245678999888876 44 66
Q ss_pred eeeecCceeeccccccCCceeecCChhhHHHHHHc-CCCCCChhhHHHHHHhhhcCCCCCCCCCCccCCCCCeeeeeC-C
Q psy1040 148 ICEWPRGKMLAGTGAMTGMMYTRSHPSIYDEWQRQ-GNPGWGFSDVLRYFIKSEHNLNRDQVDPEYHGYDGPLKVQRF-S 225 (614)
Q Consensus 148 ~~~~~~g~~lGGsS~~n~~~~~r~~~~d~~~w~~~-g~~~w~~~~l~~y~~~~e~~~~~~~~~~~~~~~~g~l~v~~~-~ 225 (614)
.+.|++|++|||+|.+|+|+|.|+.+.||+.|+.. |+++|+|++++|||+++|++.... .+ +|+..||+.+... .
T Consensus 79 ~~~~~~g~~lGGsS~iN~~~~~R~~~~Dfd~w~~~~g~~~Ws~~~l~py~~k~E~~~~~~--~~-~~g~~gp~~~~~~~~ 155 (560)
T PRK02106 79 RMECPRGKVLGGSSSINGMVYIRGNAMDYDNWAELPGLEGWSYADCLPYFKKAETRDGGE--DD-YRGGDGPLSVTRGKP 155 (560)
T ss_pred eeecccccccCCCCCccceEEecCCHHHHHHHHhhcCCCCCCHHHHHHHHHHhhccCCCC--cc-ccCCCCCEEEeCCCC
Confidence 78899999999999999999999999999999987 889999999999999999987321 22 6888899988755 4
Q ss_pred CCCchhHHHHHHHHHcCCCcC-CCCCCCcceeEEeeccccCCcccccccccchhhhcCCCeEEEcccEEEEEEEcCCCCe
Q psy1040 226 SYPPIGEDIIKAGKELGYASG-DFNGANQIGVNFAQVMVDNGVRSSTPRMFLRDKYKQDNLKVQLNAHVMKLNIDPKTKR 304 (614)
Q Consensus 226 ~~~~~~~~~~~a~~~~G~~~~-d~~~~~~~g~~~~~~~~~~g~r~s~~~~~L~~~~~~~n~~I~~~~~V~~I~~d~~~~r 304 (614)
...+..+.|.++++++|++.. ++++....|++.+...|..|.|.++..+||.++.+++|++|++++.|++|+++ +++
T Consensus 156 ~~~~~~~~~~~a~~~lG~~~~~~~~~~~~~g~~~~~~~~~~g~R~s~~~~~l~~a~~~~nl~i~~~a~V~rI~~~--~~~ 233 (560)
T PRK02106 156 GTNPLFQAFVEAGVQAGYPRTDDLNGYQQEGFGPMDRTVTNGRRWSAARAYLDPALKRPNLTIVTHALTDRILFE--GKR 233 (560)
T ss_pred CCCHHHHHHHHHHHHcCCCcCCCCCCCCCceeEEEeeecCCCEEEChHHHhhccccCCCCcEEEcCCEEEEEEEe--CCe
Confidence 456778889999999999876 77877788888888888999999999999999888999999999999999998 689
Q ss_pred EEEEEEEeCCCCceEEEEeccEEEEccCCCChHHHHHHhCCCCchhhhhcCCCcccccc-ccccccccccCceEEEEecC
Q psy1040 305 ALSVQFKDTNTNEIKTVKAKKEIILTAGAIGSPQLLMLSGVGPKSHLDELGIETISDLR-VGYNLVHHVGANLKFSILDN 383 (614)
Q Consensus 305 a~GV~~~~~~~g~~~~v~A~k~VVlaaG~i~sp~LLl~SGig~~~~l~~~gi~~~~dlp-VG~nl~dH~~~~~~~~~~~~ 383 (614)
|+||++.+. +...++.+.|+||||||+++||+|||+|||||+++|+++||+++.||| ||+|||||+.+ .+.+.+++
T Consensus 234 a~GV~~~~~--~~~~~~~~ak~VILaaGai~TP~LLl~SGIG~~~~L~~~gI~~~~dlP~VG~NL~dH~~~-~~~~~~~~ 310 (560)
T PRK02106 234 AVGVEYERG--GGRETARARREVILSAGAINSPQLLQLSGIGPAEHLKELGIPVVHDLPGVGENLQDHLEV-YIQYECKQ 310 (560)
T ss_pred EEEEEEEeC--CcEEEEEeeeeEEEccCCCCCHHHHhhcCCCChHHHHhcCCceEeeCCCCCcChhhCccc-eEEEEeCC
Confidence 999999876 444455555799999999999999999999999999999999999999 99999999986 57777765
Q ss_pred CCCCCCc--ch---HHHHhHHHhcCCCccccccccc-cccc-c-c--CCCcceeeccccccccccccccccCCCCCCceE
Q psy1040 384 GVSDNNG--EI---DEKGTYLEESNEGLSSMKGNMD-EMLN-D-G--RPGRSILSNTFNALFSNNNKEEDKMPCGRRSIY 453 (614)
Q Consensus 384 ~~~~~~~--~~---~~~~~~~~~~~~G~~~~~~~~~-~f~~-~-~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 453 (614)
+...... .+ ....+|+ ..+.|++....... +|.+ . . .|++++.+.... +... .. .......+.
T Consensus 311 ~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~--~~~~-~~---~~~~~~~~~ 383 (560)
T PRK02106 311 PVSLYPALKWWNKPKIGAEWL-FTGTGLGASNHFEAGGFIRSRAGVDWPNIQYHFLPVA--IRYD-GS---NAVKGHGFQ 383 (560)
T ss_pred CcccccccchhhhhHHHHHHH-hcCCCCccccccceeeEEecCCCCCCCCeEEEEeecc--cccc-CC---CCCCCCeEE
Confidence 4322110 11 2234566 56777765432211 4444 1 1 466654332110 1000 00 000122455
Q ss_pred EeecccccCcceEEEeccCCCCCCCEEEeCCCCCHHHHHHHHHHHHHHHHHHhchhhhhcccccccccCCCCCCCCCCCH
Q psy1040 454 ARPTNLLPISRGRLVLRSADPFEYPKIHSNYLVMKQDIDVIIEGIRIIQKLTRTKALQKWDFQIDSTKMPECKHFEWDSN 533 (614)
Q Consensus 454 ~~~~~~~p~s~g~v~l~s~d~~~~P~i~~~y~~~~~D~~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~p~~~~~~~~s~ 533 (614)
+...+++|.|+|+|+|+++||++.|+|+++|+.++.|++.++++++.+.+++++..++.+.... ..|++ ...++
T Consensus 384 ~~~~~~~P~srG~V~L~s~d~~~~P~i~~~y~~~~~D~~~~~~~~~~~~~i~~~~~~~~~~~~~---~~p~~---~~~~~ 457 (560)
T PRK02106 384 AHVGPMRSPSRGSVKLKSADPRAHPSILFNYMSTEQDWREFRDAIRLTREIMAQPALDPYRGRE---ISPGA---DVQTD 457 (560)
T ss_pred EEEEecCCcceEEEEEeCCCCccCceEccccCCCHHHHHHHHHHHHHHHHHHcChhhhhccccc---cCCCc---ccCCH
Confidence 5566778999999999999999999999999999999999999999999999887777654432 23443 24678
Q ss_pred HHHHHHHhccCCCcccccccccccCCCCCCCccCCCCcEecCCCcEEeccCCCCCCCCcchHHHHHHHHHHHHHHHHhhh
Q psy1040 534 EYWECYIKTYTLPENHPGGTCKMGPADDYSSVVDAQLRIHGVPNLRVMDASIFPTNINSNPIATIIMIAEKGADMVKESW 613 (614)
Q Consensus 534 ~~~~~~i~~~~~~~~H~~GT~rMG~~~d~~~VVD~~lrV~gv~nL~V~DaSv~P~~~~~Np~~ti~aia~r~Ad~I~~~~ 613 (614)
++|+++++....+.+|++||||||+ |++||||++|||||++||||+|+||||+++++||++|+||||||+||+|++++
T Consensus 458 ~~~~~~i~~~~~~~~H~~GTcrMG~--d~~sVVD~~~rV~Gv~nLrVvDaSv~P~~~~~np~~ti~aiaeraAd~I~~~~ 535 (560)
T PRK02106 458 EEIDAFVREHAETAYHPSCTCKMGT--DPMAVVDPEGRVHGVEGLRVVDASIMPTITNGNLNAPTIMIAEKAADLIRGRT 535 (560)
T ss_pred HHHHHHHHhccCcCcccCCCeecCC--CCCeeECCCCEEeccCCeEEeeccccCCCCCcchHHHHHHHHHHHHHHHhccC
Confidence 8999999999889999999999995 56899999999999999999999999999999999999999999999999876
No 3
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=100.00 E-value=9.7e-87 Score=735.60 Aligned_cols=512 Identities=35% Similarity=0.545 Sum_probs=411.9
Q ss_pred cEEEECCCCchHHHHHHHhcCCCCeEEEecCCCCCC---Ccccccccccc-ccCCcccccceecccccccccC-CCeeee
Q psy1040 77 DFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGPDEP---TVTSVPGFAAS-AVGTHLDWKYKTERNKYACLST-GGICEW 151 (614)
Q Consensus 77 DvIVVGsG~aG~~~A~~Lae~~G~~VLlLEaG~~~~---~~~~~p~~~~~-~~~~~~~w~~~~~~~~~~~~~~-~~~~~~ 151 (614)
||||||||+||+++|.||||+++.||||||+|+... .....|..... +..+.++|.|.+.|+. .+ ++.+.|
T Consensus 1 D~iIVG~G~aG~vvA~rLs~~~~~~VlvlEaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~----~~~~~~~~~ 76 (532)
T TIGR01810 1 DYIIIGGGSAGSVLAGRLSEDVSNSVLVLEAGGSDYPWDLLIQMPAALAYPAGNKRYNWIYETEPEP----HMNNRRVGH 76 (532)
T ss_pred CEEEECCCchHHHHHHHhccCCCCeEEEEecCCCCCCCCcceeCcHHHHHhcCCCCcceeeEcccCC----CCCCceEee
Confidence 899999999999999999999337999999998532 23444543322 2244578999988886 45 778899
Q ss_pred cCceeeccccccCCceeecCChhhHHHHHH-cCCCCCChhhHHHHHHhhhcCCCCCCCCCCccCCCCCeeeeeCCCCCch
Q psy1040 152 PRGKMLAGTGAMTGMMYTRSHPSIYDEWQR-QGNPGWGFSDVLRYFIKSEHNLNRDQVDPEYHGYDGPLKVQRFSSYPPI 230 (614)
Q Consensus 152 ~~g~~lGGsS~~n~~~~~r~~~~d~~~w~~-~g~~~w~~~~l~~y~~~~e~~~~~~~~~~~~~~~~g~l~v~~~~~~~~~ 230 (614)
++|++|||+|.+|+|+|.|+++.||+.|+. .|+++|+|++++|||+++|+..... .+ +|+.+|++.+...+...+.
T Consensus 77 ~~g~~lGGss~in~~~~~R~~~~d~~~w~~~~g~~~W~~~~l~py~~~~E~~~~~~--~~-~~g~~G~~~v~~~~~~~~~ 153 (532)
T TIGR01810 77 ARGKVLGGSSSINGMIYQRGNPMDYEKWAKPEGMESWDYADCLPYYKRLETTFGGE--KP-YRGHDGPIKVRRGPADNPL 153 (532)
T ss_pred ecccccCCCCCEeeeEEecCCHHHHHHHHHhcCCCCCCHHHHHHHHHHHhccCCCC--cc-cCCCCCCEEEecCCCCCHH
Confidence 999999999999999999999999999998 6889999999999999999887532 12 7899999998877777788
Q ss_pred hHHHHHHHHHcCCCcC-CCCCCCcceeEEeeccccCCcccccccccchhhhcCCCeEEEcccEEEEEEEcCCCCeEEEEE
Q psy1040 231 GEDIIKAGKELGYASG-DFNGANQIGVNFAQVMVDNGVRSSTPRMFLRDKYKQDNLKVQLNAHVMKLNIDPKTKRALSVQ 309 (614)
Q Consensus 231 ~~~~~~a~~~~G~~~~-d~~~~~~~g~~~~~~~~~~g~r~s~~~~~L~~~~~~~n~~I~~~~~V~~I~~d~~~~ra~GV~ 309 (614)
.+.+.++++++|++.. +.++....|++.+...+..|.|+++..+||.++.+++|++|++++.|++|+++ ++||+||+
T Consensus 154 ~~~~~~a~~~~G~~~~~~~~~~~~~g~~~~~~~~~~g~r~s~~~~~l~~a~~r~nl~i~~~~~V~rI~~~--~~ra~GV~ 231 (532)
T TIGR01810 154 FQAFIEAGVEAGYNKTPDVNGFRQEGFGPMDSTVHNGRRVSAARAYLHPAMKRPNLEVQTRAFVTKINFE--GNRATGVE 231 (532)
T ss_pred HHHHHHHHHHcCCCccCCCCCCCccceEEEEEEcCCCEEEcHHHHHhhhhccCCCeEEEeCCEEEEEEec--CCeEEEEE
Confidence 8899999999999876 67776677888888788899999999999999888999999999999999998 68999999
Q ss_pred EEeCCCCceEEEEeccEEEEccCCCChHHHHHHhCCCCchhhhhcCCCcccccc-ccccccccccCceEEEEecCCCCCC
Q psy1040 310 FKDTNTNEIKTVKAKKEIILTAGAIGSPQLLMLSGVGPKSHLDELGIETISDLR-VGYNLVHHVGANLKFSILDNGVSDN 388 (614)
Q Consensus 310 ~~~~~~g~~~~v~A~k~VVlaaG~i~sp~LLl~SGig~~~~l~~~gi~~~~dlp-VG~nl~dH~~~~~~~~~~~~~~~~~ 388 (614)
+.+. ++..++.+.|+||||||+++||+|||+|||||+++|+++||+++.|+| ||+|||||+.+ .+.+.++.+....
T Consensus 232 ~~~~--~~~~~~~~ak~VIlaAGai~SP~LLl~SGIG~~~~L~~~gI~~~~~lp~VG~nL~DH~~~-~~~~~~~~~~~~~ 308 (532)
T TIGR01810 232 FKKG--GRKEHTEANKEVILSAGAINSPQLLQLSGIGDAEHLRELGIEPRIHLPGVGENLQDHLEV-YVQHACKQPVSLY 308 (532)
T ss_pred EEeC--CcEEEEEEeeeEEEccCCCCCHHHHHhcCCCCHHHHHhcCCCeEeeCCccccchhhcccc-eeEEEecCCcccc
Confidence 9876 555556555799999999999999999999999999999999999999 99999999986 5777776543211
Q ss_pred Cc-----chHHHHhHHHhcCCCccccccccc-cccc-c-c--CCCcceeeccccccccccccccccCCCCCCceEEeecc
Q psy1040 389 NG-----EIDEKGTYLEESNEGLSSMKGNMD-EMLN-D-G--RPGRSILSNTFNALFSNNNKEEDKMPCGRRSIYARPTN 458 (614)
Q Consensus 389 ~~-----~~~~~~~~~~~~~~G~~~~~~~~~-~f~~-~-~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (614)
.. ......+|+ ..+.|++....... +|.+ . . .|++++.+.... .... . ........+.+....
T Consensus 309 ~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~--~~~~--~--~~~~~~~~~~~~~~~ 381 (532)
T TIGR01810 309 PSLNWLKQPFIGAQWL-FGRKGAGASNHFEGGGFVRSNDDVDYPNIQYHFLPVA--IRYD--G--TKAPKAHGFQVHVGP 381 (532)
T ss_pred cccchhhhhHHHHHHH-hcCCCCccccccceeEEEecCCCCCCCCeEEEEEeee--eccC--C--CCCCCCCcEEEEEee
Confidence 10 011223566 55666654432111 4544 1 1 466665432211 0000 0 000001234455566
Q ss_pred cccCcceEEEeccCCCCCCCEEEeCCCCCHHHHHHHHHHHHHHHHHHhchhhhhcccccccccCCCCCCCCCCCHHHHHH
Q psy1040 459 LLPISRGRLVLRSADPFEYPKIHSNYLVMKQDIDVIIEGIRIIQKLTRTKALQKWDFQIDSTKMPECKHFEWDSNEYWEC 538 (614)
Q Consensus 459 ~~p~s~g~v~l~s~d~~~~P~i~~~y~~~~~D~~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~p~~~~~~~~s~~~~~~ 538 (614)
++|.|||+|+|+++||++.|.|+++|+.++.|++.++++++.+++++++..++.+.... ..|+ ....+|++|++
T Consensus 382 ~~P~srG~V~L~s~dp~~~P~i~~~y~~~~~D~~~~~~~~~~~~~i~~~~~~~~~~~~~---~~p~---~~~~~d~~~~~ 455 (532)
T TIGR01810 382 MYSNSRGHVKIKSKDPFEKPEIVFNYMSHEEDWREFREAIRVTREILKQKALDPYRGGE---ISPG---PEVQTDEEIDE 455 (532)
T ss_pred cCCCCceEEEecCCCCccCceeccccCCCHHHHHHHHHHHHHHHHHHcCcchhhccccc---cCCC---CCCCCHHHHHH
Confidence 78999999999999999999999999999999999999999999999887776653322 2232 13468999999
Q ss_pred HHhccCCCcccccccccccCCCCCCCccCCCCcEecCCCcEEeccCCCCCCCCcchHHHHHHHHHHHHHHHHhhh
Q psy1040 539 YIKTYTLPENHPGGTCKMGPADDYSSVVDAQLRIHGVPNLRVMDASIFPTNINSNPIATIIMIAEKGADMVKESW 613 (614)
Q Consensus 539 ~i~~~~~~~~H~~GT~rMG~~~d~~~VVD~~lrV~gv~nL~V~DaSv~P~~~~~Np~~ti~aia~r~Ad~I~~~~ 613 (614)
++|....+.+|++||||||+++|++||||++|||||++||||+|+||||+++++||++|+||||||+||+|+++.
T Consensus 456 ~ir~~~~~~~H~~GTcrMG~~~~~~~VVD~~~rV~Gv~nLrVvDaSv~P~~~~~n~~~t~~aiaeraAd~I~~~~ 530 (532)
T TIGR01810 456 FVRRHGETALHPCGTCKMGPASDEMSVVDPETRVHGMEGLRVVDASIMPRITNGNLNAPVIMMGEKAADIIRGKK 530 (532)
T ss_pred HHhhhcccccccccceeCCCcccCCCccCCCCeEeccCCcEEeeeccCCCCCCCccHHHHHHHHHHHHHHHhccC
Confidence 999999999999999999986667899999999999999999999999999999999999999999999999863
No 4
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=100.00 E-value=2.5e-78 Score=662.79 Aligned_cols=514 Identities=35% Similarity=0.563 Sum_probs=418.5
Q ss_pred CCcccEEEECCCCchHHHHHHHhcCCCCeEEEecCCCCCCC-ccccccccccccCC-cccccceecccccccccC-CCee
Q psy1040 73 QEEYDFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGPDEPT-VTSVPGFAASAVGT-HLDWKYKTERNKYACLST-GGIC 149 (614)
Q Consensus 73 ~~~yDvIVVGsG~aG~~~A~~Lae~~G~~VLlLEaG~~~~~-~~~~p~~~~~~~~~-~~~w~~~~~~~~~~~~~~-~~~~ 149 (614)
..+||+||||||.+|+++|.|||+. |.+|||||+|+.... ...+|..+..+... ..+|.|.++++. .+ ++.+
T Consensus 5 ~~~~D~vIVGsG~aG~~lA~rLs~~-g~~VllLEaG~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~----~~~~r~~ 79 (542)
T COG2303 5 KMEYDYVIVGSGSAGSVLAARLSDA-GLSVLVLEAGGPDRRPLIQMPAAYAFLMNGPRYDWGFRTEPEP----HLRGREL 79 (542)
T ss_pred cCCCCEEEECCCchhHHHHHHhcCC-CCeEEEEeCCCCCCccceecchhHhhhccCcccCCccccCccc----CCCCccc
Confidence 5679999999999999999999955 999999999986533 45667666666555 789999999987 56 8889
Q ss_pred eecCceeeccccccCCceeecCChhhHHHHHHc-CCCCCChhhHHHHHHhhhcCCCCCCCC-CCccCCCCCeeeeeCCCC
Q psy1040 150 EWPRGKMLAGTGAMTGMMYTRSHPSIYDEWQRQ-GNPGWGFSDVLRYFIKSEHNLNRDQVD-PEYHGYDGPLKVQRFSSY 227 (614)
Q Consensus 150 ~~~~g~~lGGsS~~n~~~~~r~~~~d~~~w~~~-g~~~w~~~~l~~y~~~~e~~~~~~~~~-~~~~~~~g~l~v~~~~~~ 227 (614)
.|++|++|||+|.+|+|+|.|+.+.||+.|... |+++|.|+|++|||+++|++......+ ...|+..||+.+......
T Consensus 80 ~~~rgk~lGGsS~ing~~~~R~~~~Df~~w~~~~G~~~W~y~d~lPyf~~aE~~~~~~g~~~~~~~g~~gp~~~~~~~~~ 159 (542)
T COG2303 80 AWPRGKVLGGSSSINGMVYVRGHPEDFDAWAQESGAPGWPYDDVLPYFKRAEDLLGVGGQDLRTWHGGGGPLPVSPPRSP 159 (542)
T ss_pred cccccCcccchhhhccceeecCCHHHHHHHHhhcCCCCCCccccHHHHHHHHhhcCCCCCCCCCCcCCCCCccccCCCCc
Confidence 999999999999999999999999999999876 779999999999999999987764332 227889999998777666
Q ss_pred CchhHHHHHHHHHcCCCcC-CCCCCCcceeEEeeccccCCcccccccccchhhhcCCCeEEEcccEEEEEEEcCCCCeEE
Q psy1040 228 PPIGEDIIKAGKELGYASG-DFNGANQIGVNFAQVMVDNGVRSSTPRMFLRDKYKQDNLKVQLNAHVMKLNIDPKTKRAL 306 (614)
Q Consensus 228 ~~~~~~~~~a~~~~G~~~~-d~~~~~~~g~~~~~~~~~~g~r~s~~~~~L~~~~~~~n~~I~~~~~V~~I~~d~~~~ra~ 306 (614)
.++.+.+.++..++|++.. ++|+....|++.++.++.+|.|+++..+||.++.+++|++|++++.|++|+++ ++|++
T Consensus 160 ~~~~~a~~~a~~~~G~~~~~~~~~~~~~g~g~~~~~~~~g~r~sa~~a~l~~a~~~~nl~v~t~a~v~ri~~~--~~r~~ 237 (542)
T COG2303 160 NPIARAFIEAGEQLGFPTTPDPNGADQEGFGPYCVTICNGRRWSAARAYLKPALKRPNLTLLTGARVRRILLE--GDRAV 237 (542)
T ss_pred hHHHHHHHHHHHHcCCCcCcccccCCCCCcccceeeccCCeEeechhhcchhHhcCCceEEecCCEEEEEEEE--CCeeE
Confidence 7899999999999999987 78888888888888887899999999999999999999999999999999999 78999
Q ss_pred EEEEEeCCCCceEEEEeccEEEEccCCCChHHHHHHhCCCCchhhhhcCCCcccccc-ccccccccccCceEEEEecCCC
Q psy1040 307 SVQFKDTNTNEIKTVKAKKEIILTAGAIGSPQLLMLSGVGPKSHLDELGIETISDLR-VGYNLVHHVGANLKFSILDNGV 385 (614)
Q Consensus 307 GV~~~~~~~g~~~~v~A~k~VVlaaG~i~sp~LLl~SGig~~~~l~~~gi~~~~dlp-VG~nl~dH~~~~~~~~~~~~~~ 385 (614)
||++...+.+......+.++||||||+|+||+|||+||||+.+.+..+|+.++.++| ||+|||||+.+ .+.+..+...
T Consensus 238 gv~~~~~~~~~~~~~~a~~~viL~AGai~Sp~LL~~Sgig~~~~~~~~g~~~v~~~~~vg~nl~dH~~~-~~~~~~~~~~ 316 (542)
T COG2303 238 GVEVEIGDGGTIETAVAAREVVLAAGAINSPKLLLLSGIGPADHLLEHGIDVVGRLPGVGQNLQDHLEI-YVAFEATEPT 316 (542)
T ss_pred EEEEEeCCCCceEEEecCceEEEeccccCCHHHHHhcCCCchhhhhhcCCeeeecCcchhHHHHhhhhh-hhheeccCcc
Confidence 999987631323444455699999999999999999999999999999999999999 99999999986 4555555443
Q ss_pred -CCCCcc---h-HHHHhHHHhcCCCccccccccccccc-c--c-CCCcceeeccccccccccccccccCCCC-CCceEEe
Q psy1040 386 -SDNNGE---I-DEKGTYLEESNEGLSSMKGNMDEMLN-D--G-RPGRSILSNTFNALFSNNNKEEDKMPCG-RRSIYAR 455 (614)
Q Consensus 386 -~~~~~~---~-~~~~~~~~~~~~G~~~~~~~~~~f~~-~--~-~p~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 455 (614)
...... . .....|. ..+.|+........+|.. . . .|++++++.... +... ... ...+++.
T Consensus 317 ~~~~~~~~~~~~~~~~~~~-~~~~G~~~~~~~~~gf~~~~~~~~~p~~~~~~~~~~--~~~~-------~~~~~~~~~~~ 386 (542)
T COG2303 317 NDSVLSLFSKLGIGADRYL-LTRDGPGATNHFEGGFVRSGPAGEYPDGQYHFAPLP--LAIR-------AAGAEHGFTLH 386 (542)
T ss_pred ccccccccccccccceeEE-eecCCCcccccccccccccCccccCCCccccccccc--cccc-------ccccCCccEEe
Confidence 111101 1 1123444 456776654332225655 2 2 788888764321 0100 111 4556777
Q ss_pred ecccccCcceEEEeccCCCCCCCEEEeCCCCCHHHHHHHHHHHHHHHHHHhchhhhhcccccccccCCCCCCCCCCCHHH
Q psy1040 456 PTNLLPISRGRLVLRSADPFEYPKIHSNYLVMKQDIDVIIEGIRIIQKLTRTKALQKWDFQIDSTKMPECKHFEWDSNEY 535 (614)
Q Consensus 456 ~~~~~p~s~g~v~l~s~d~~~~P~i~~~y~~~~~D~~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~p~~~~~~~~s~~~ 535 (614)
...++|.|+|.|.+++.||...|.|+++|.+++.|+..+.++++..++++.+..+...-... ..|+. ...++++
T Consensus 387 ~~~~rp~srg~v~~~~~d~~~~p~i~~~~~~~~~d~~~~~~~~~~~r~i~~~~~~~~~~~~e---~~~~~---~~~~~~~ 460 (542)
T COG2303 387 VGPMRPKSRGSVTLRSPDPDNRPVIDPNYLSAEGDRAIFRAGIRLTREIIGQPALDARRKAE---LAPGP---RVTTDED 460 (542)
T ss_pred eccCCCccccceecCCCCCcCCcccCccccCchhHHHHHHHHHHHHHHHhcCccchhhHHHh---hcCCC---ccccHHH
Confidence 88899999999999999999999999999999999999999999999998755544332211 22321 4467778
Q ss_pred HHHHHhccCCCcccccccccccCCCCCC-CccCCCCcEecCCCcEEeccCCCCCCCCcchHHHHHHHHHHHHHHHHhh
Q psy1040 536 WECYIKTYTLPENHPGGTCKMGPADDYS-SVVDAQLRIHGVPNLRVMDASIFPTNINSNPIATIIMIAEKGADMVKES 612 (614)
Q Consensus 536 ~~~~i~~~~~~~~H~~GT~rMG~~~d~~-~VVD~~lrV~gv~nL~V~DaSv~P~~~~~Np~~ti~aia~r~Ad~I~~~ 612 (614)
+..+++....+.+|++|||||| .||. +|+|++|||||++||||+|||+||+++++||++|++|||||+||+|+++
T Consensus 461 ~~~~~~~~~~t~~H~~GT~rMG--~Dp~~~V~d~~lrv~g~~nL~VvDaSvmPt~~~~Np~~ti~ala~raA~~I~~~ 536 (542)
T COG2303 461 ISAAIRFLARTAYHPMGTCRMG--SDPAAVVDDPYLRVHGLENLRVVDASVMPTSTGVNPNLTIIALAERAADHILGD 536 (542)
T ss_pred HHHHHHhccCccccccccccCC--CCchhhccccccccccCCCeEEeCcccCcCccCCCccHhHHHHHHHHHHHHhhc
Confidence 9999999999999999999999 5664 4555999999999999999999999999999999999999999999874
No 5
>PLN02785 Protein HOTHEAD
Probab=100.00 E-value=1.1e-75 Score=645.06 Aligned_cols=485 Identities=25% Similarity=0.322 Sum_probs=349.4
Q ss_pred CCcccEEEECCCCchHHHHHHHhcCCCCeEEEecCCCCCCCccccccccccccCCcccccceecccccccccC-CCeeee
Q psy1040 73 QEEYDFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGPDEPTVTSVPGFAASAVGTHLDWKYKTERNKYACLST-GGICEW 151 (614)
Q Consensus 73 ~~~yDvIVVGsG~aG~~~A~~Lae~~G~~VLlLEaG~~~~~~~~~p~~~~~~~~~~~~w~~~~~~~~~~~~~~-~~~~~~ 151 (614)
..+|||||||+|.|||++|.+|++ +.+|||||+|+.+.....+.. ...+.....+|.|.+.++. .. ++.+.+
T Consensus 53 ~~~yD~IIVG~G~aG~~lA~~Ls~--~~~VLllE~G~~~~~~~~~~~-~~~~~~~~~d~~~~~~~q~----~~~~~~~~~ 125 (587)
T PLN02785 53 DSAYDYIVVGGGTAGCPLAATLSQ--NFSVLLLERGGVPFGNANVSF-LENFHIGLADTSPTSASQA----FISTDGVIN 125 (587)
T ss_pred cccCCEEEECcCHHHHHHHHHHhc--CCcEEEEecCCCCCCCchhhh-HHhhCCcccccCCcccccc----ccCCCceec
Confidence 346999999999999999999999 489999999985321111111 1112234568999988875 44 677899
Q ss_pred cCceeeccccccCCceeecCChhhHHHHHHcCCCCCChhhHHHHHHhhhcCCCCCCCCCCccCCCCCeeeeeCCCCCchh
Q psy1040 152 PRGKMLAGTGAMTGMMYTRSHPSIYDEWQRQGNPGWGFSDVLRYFIKSEHNLNRDQVDPEYHGYDGPLKVQRFSSYPPIG 231 (614)
Q Consensus 152 ~~g~~lGGsS~~n~~~~~r~~~~d~~~w~~~g~~~w~~~~l~~y~~~~e~~~~~~~~~~~~~~~~g~l~v~~~~~~~~~~ 231 (614)
+|||+|||+|.+|+|+|.|+++.||+. .+|+|+++.+||++.|+.... .+...+..
T Consensus 126 ~rGr~LGGsS~iN~~~y~Rg~~~d~~~------~GW~~~~~~~~~~~~e~~~~~------------------~~~~~~~~ 181 (587)
T PLN02785 126 ARARVLGGGTCINAGFYSRASTRFIQK------AGWDAKLVNESYPWVERQIVH------------------WPKVAPWQ 181 (587)
T ss_pred cccceecchhhhcCeEEEeCCHHHhcc------CCCCcccccchHHHHhccccc------------------CCCcChHH
Confidence 999999999999999999999999964 589999999999999875311 01224567
Q ss_pred HHHHHHHHHcCCCcCCCCCCC---cceeEEeeccc-cCCcccccccccchhhhcCCCeEEEcccEEEEEEEcCCC--CeE
Q psy1040 232 EDIIKAGKELGYASGDFNGAN---QIGVNFAQVMV-DNGVRSSTPRMFLRDKYKQDNLKVQLNAHVMKLNIDPKT--KRA 305 (614)
Q Consensus 232 ~~~~~a~~~~G~~~~d~~~~~---~~g~~~~~~~~-~~g~r~s~~~~~L~~~~~~~n~~I~~~~~V~~I~~d~~~--~ra 305 (614)
..+++++.++|++. +|+.. ..|........ ..|.|+++.. + .+..+++|++|++++.|+||++++.+ ++|
T Consensus 182 ~~~~~a~~e~G~~~--~n~~~~d~~~G~~~g~~i~~~~g~R~saa~-l-~~~~~~~nl~Vl~~a~V~rIl~~~~~~~~ra 257 (587)
T PLN02785 182 AALRDSLLEVGVSP--FNGFTYDHVYGTKVGGTIFDEFGRRHTAAE-L-LAAGNPNKLRVLLHATVQKIVFDTSGKRPRA 257 (587)
T ss_pred HHHHHHHHHcCCCc--cCCCCCCCccceeeeEEEeCCCCEEcCHHH-H-HhhcCCCCeEEEeCCEEEEEEEcCCCCCceE
Confidence 88999999999974 23211 11111111111 4688888765 3 45677899999999999999998532 389
Q ss_pred EEEEEEeCCCCceEEE----EeccEEEEccCCCChHHHHHHhCCCCchhhhhcCCCcccccc-ccccccccccCceEEEE
Q psy1040 306 LSVQFKDTNTNEIKTV----KAKKEIILTAGAIGSPQLLMLSGVGPKSHLDELGIETISDLR-VGYNLVHHVGANLKFSI 380 (614)
Q Consensus 306 ~GV~~~~~~~g~~~~v----~A~k~VVlaaG~i~sp~LLl~SGig~~~~l~~~gi~~~~dlp-VG~nl~dH~~~~~~~~~ 380 (614)
+||++.+.+ |+..++ +++|+||||||+++||+|||+|||||+++|+++||+++.|+| ||+||+||+.. .+.+.
T Consensus 258 ~GV~~~~~~-g~~~~~~~~~~~~~eVILsAGai~sP~lL~~SGIGp~~~L~~~gIpvv~dlP~VG~NL~DHp~~-~i~~~ 335 (587)
T PLN02785 258 TGVIFKDEN-GNQHQAFLSNNKGSEIILSAGAIGSPQMLLLSGIGPKKELKKHKIPVVLHNEHVGKGMADNPMN-SIFVP 335 (587)
T ss_pred EEEEEEECC-CceEEEEeecccCceEEecccccCCHHHHHHcCCCCHHHHHHcCCCeeecCCCcccchhhCccc-ceEEE
Confidence 999998753 554443 256799999999999999999999999999999999999999 99999999986 56666
Q ss_pred ecCCCCCCCcchHHHHhHHHhcCCCcccccccccccccccCCCcceee-------ccc---ccc-ccccccccccC---C
Q psy1040 381 LDNGVSDNNGEIDEKGTYLEESNEGLSSMKGNMDEMLNDGRPGRSILS-------NTF---NAL-FSNNNKEEDKM---P 446 (614)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~f~~~~~p~~~~~~-------~~~---~~~-~~~~~~~~~~~---~ 446 (614)
.+.+... .....+. ....|++..... +|... ..++.... ..+ ... ...+....++. .
T Consensus 336 ~~~~~~~-----~~~~~~~-~~~~g~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (587)
T PLN02785 336 SKAPVEQ-----SLIQTVG-ITKMGVYIEASS--GFGQS-PDSIHCHHGIMSAEIGQLSTIPPKQRTPEAIQAYIHRKKN 406 (587)
T ss_pred eCCCchh-----hhHhhhh-hhccccceeccc--ccccC-chhhhhhccccccccccccccCcccccchhhhhhccCccc
Confidence 5543210 0011111 122233211000 00000 00000000 000 000 00000000000 0
Q ss_pred CC---CCceEEeecccccCcceEEEeccCCCCCCCEEEeCCCCCHHHHHHHHHHHHHHHHHHhchhhhhccccccc--c-
Q psy1040 447 CG---RRSIYARPTNLLPISRGRLVLRSADPFEYPKIHSNYLVMKQDIDVIIEGIRIIQKLTRTKALQKWDFQIDS--T- 520 (614)
Q Consensus 447 ~~---~~~~~~~~~~~~p~s~g~v~l~s~d~~~~P~i~~~y~~~~~D~~~l~~~~~~~~~i~~~~~~~~~g~~~~~--~- 520 (614)
+. .....+...+++|.|||+|+|.|+||++.|.|++||+.+|.|++.++++++.+++++++..|+++...... .
T Consensus 407 ~~~~~~~~~~~~~~l~~P~SrG~V~L~ssdp~~~P~i~~ny~~~p~Dl~~~~~g~r~~~~i~~~~~~~~~~~~~~~~~~~ 486 (587)
T PLN02785 407 LPHEAFNGGFILEKIAGPISTGHLSLINTNVDDNPSVTFNYFKHPQDLQRCVYGIRTIEKIVKTNHFTNFTQCDKQTMEK 486 (587)
T ss_pred ccccccccceEEEEecCCCcceEEEecCCCCCcCCccccccCCCHHHHHHHHHHHHHHHHHHcChhhhhhcccccccccc
Confidence 00 00012345667999999999999999999999999999999999999999999999999888776532111 0
Q ss_pred -----------cCCCCCCCCCCCHHHHHHHHhccCCCcccccccccccCCCCCCCccCCCCcEecCCCcEEeccCCCCCC
Q psy1040 521 -----------KMPECKHFEWDSNEYWECYIKTYTLPENHPGGTCKMGPADDYSSVVDAQLRIHGVPNLRVMDASIFPTN 589 (614)
Q Consensus 521 -----------~~p~~~~~~~~s~~~~~~~i~~~~~~~~H~~GT~rMG~~~d~~~VVD~~lrV~gv~nL~V~DaSv~P~~ 589 (614)
..|+ ...++++|++++|....+.+|++|||+|| +|||+++||||++||||||+||||.+
T Consensus 487 ~~~~~~~~~~~~~p~----~~~~d~~l~~~ir~~~~t~~H~~GTc~MG------~VVD~~lrV~GV~~LRVvDaSi~P~~ 556 (587)
T PLN02785 487 VLNMSVKANINLIPK----HTNDTKSLEQFCKDTVITIWHYHGGCHVG------KVVDQNYKVLGVSRLRVIDGSTFDES 556 (587)
T ss_pred ccccccccccccCCC----CCCCHHHHHHHHHHhcccccCCcccccCC------CeECCCCeEeccCCeEEeecccCCCC
Confidence 0121 23578899999999999999999999999 79999999999999999999999999
Q ss_pred CCcchHHHHHHHHHHHHHHHHhhh
Q psy1040 590 INSNPIATIIMIAEKGADMVKESW 613 (614)
Q Consensus 590 ~~~Np~~ti~aia~r~Ad~I~~~~ 613 (614)
|++||++|+||||||+||+|+++.
T Consensus 557 p~~np~atv~miaer~A~~Il~~~ 580 (587)
T PLN02785 557 PGTNPQATVMMMGRYMGVKILRER 580 (587)
T ss_pred CCCccHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999864
No 6
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=100.00 E-value=8.1e-53 Score=454.44 Aligned_cols=478 Identities=14% Similarity=0.153 Sum_probs=293.8
Q ss_pred ccEEEECCCCchHHHHHHHhcCCCCeEEEecCCCCCCCc----ccccc---------cccc----ccC------------
Q psy1040 76 YDFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGPDEPTV----TSVPG---------FAAS----AVG------------ 126 (614)
Q Consensus 76 yDvIVVGsG~aG~~~A~~Lae~~G~~VLlLEaG~~~~~~----~~~p~---------~~~~----~~~------------ 126 (614)
|||||||+|++|+++|+.|+++ |++|+|||+|...... ...+. +... ++.
T Consensus 1 ~dv~ivg~Gp~G~~~a~~l~~~-g~~v~~~e~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (544)
T TIGR02462 1 YDVFIAGSGPIGCTYARLCVDA-GLKVAMVEIGAADSFLKIGAHKKNEIEYQKDIDKFVNVIKGALQSVSVPVSNLVIPT 79 (544)
T ss_pred CcEEEECCchHHHHHHHHHHHC-CCeEEEEeccCccCCCcccccccccccccccHHHHHHHHhhhccccccccccCCcCC
Confidence 7999999999999999999999 9999999999876410 00000 0000 000
Q ss_pred -Ccccccce---------ecccccccccCCCeeeecCceeeccccccCCceeecCChhhHHHHHHcCCCCC--ChhhHHH
Q psy1040 127 -THLDWKYK---------TERNKYACLSTGGICEWPRGKMLAGTGAMTGMMYTRSHPSIYDEWQRQGNPGW--GFSDVLR 194 (614)
Q Consensus 127 -~~~~w~~~---------~~~~~~~~~~~~~~~~~~~g~~lGGsS~~n~~~~~r~~~~d~~~w~~~g~~~w--~~~~l~~ 194 (614)
....|.-. ..|.+..... -....+-+.+||+|.+|++.+.|..+.+. .| . ..+| +|+|++|
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~ar~R~vGGsS~hW~g~~~R~~p~~r-~g--~-~~dWPI~y~eL~P 152 (544)
T TIGR02462 80 LDPTAWSASIESFFVSNGKNPEQDPFRN---LSGEAVTRGVGGMSTHWTCATPRFHREER-PK--L-SDDAAEDDAEWDR 152 (544)
T ss_pred CCccccccCCCcceecCCCCcccCchhc---cChhheeeccCchhhhcCcccCCCCHHhc-cC--C-CCCCCCCHHHHHH
Confidence 00112110 0000000000 01134678999999999999999999642 12 1 3689 9999999
Q ss_pred HHHhhhcCCCCCCCCCCccCCCCCeeeeeCCCCCchhHHHHHHHHHcCC-CcCCCCCCCcceeEEeeccccCCccccccc
Q psy1040 195 YFIKSEHNLNRDQVDPEYHGYDGPLKVQRFSSYPPIGEDIIKAGKELGY-ASGDFNGANQIGVNFAQVMVDNGVRSSTPR 273 (614)
Q Consensus 195 y~~~~e~~~~~~~~~~~~~~~~g~l~v~~~~~~~~~~~~~~~a~~~~G~-~~~d~~~~~~~g~~~~~~~~~~g~r~s~~~ 273 (614)
||+++|++++..... + ..........+.+.+.++ |. ... .. ...+.. ..|..+.++++..
T Consensus 153 yY~~Ae~~~gv~g~~---------~--~~~~~~~~~~~~~~~~~~--g~~~~~--~~--PlA~~~--~~c~~~ak~s~~~ 213 (544)
T TIGR02462 153 LYTKAESLIGTSTDQ---------F--DESIRHNLVLRKLQDEYK--GQRDFQ--PL--PLACHR--RTDPTYVEWHSAD 213 (544)
T ss_pred HHHHHHHHhCCCCCc---------C--CCcccchhHHHHHHHHhc--cccccc--cC--chhhhc--cCCCccceecCCc
Confidence 999999988863210 0 000001122222322221 33 111 11 111111 1345577777655
Q ss_pred ccchhhh----cCCCeEEEcccEEEEEEEcCCC-CeEEEEEEEeCCCCceEEEEeccEEEEccCCCChHHHHHHhCCCCc
Q psy1040 274 MFLRDKY----KQDNLKVQLNAHVMKLNIDPKT-KRALSVQFKDTNTNEIKTVKAKKEIILTAGAIGSPQLLMLSGVGPK 348 (614)
Q Consensus 274 ~~L~~~~----~~~n~~I~~~~~V~~I~~d~~~-~ra~GV~~~~~~~g~~~~v~A~k~VVlaaG~i~sp~LLl~SGig~~ 348 (614)
..+..+. +++|++|++++.|++|++++++ ++|+||++.+..+|+.++++|+ .||||||+|+|||||++|+++..
T Consensus 214 t~~~~~~~~~~~~~n~~l~~~a~v~~i~~d~~~~~~v~~v~~~d~~~g~~~~v~A~-~vVLAagaIetpRLLL~S~~~~~ 292 (544)
T TIGR02462 214 TVFDLQPNDDAPSERFTLLTNHRCTRLVRNETNESEIEAALVRDLLSGDRFEIKAD-VYVLACGAVHNPQILVNSGFGQL 292 (544)
T ss_pred cchhhhhhhhccCCCEEEEcCCEEEEEEeCCCCCceeEEEEEEECCCCcEEEEECC-EEEEccCchhhHHHHHhCCCCCC
Confidence 5555444 4789999999999999998644 6899999998534888999996 79999999999999999999753
Q ss_pred hhhhhcCCCcccccc-ccccccccccCceEEEEecCCC-CCCCcchHHHHhHHHhcCC-Cccc-cc-cccc-ccccccCC
Q psy1040 349 SHLDELGIETISDLR-VGYNLVHHVGANLKFSILDNGV-SDNNGEIDEKGTYLEESNE-GLSS-MK-GNMD-EMLNDGRP 422 (614)
Q Consensus 349 ~~l~~~gi~~~~dlp-VG~nl~dH~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-G~~~-~~-~~~~-~f~~~~~p 422 (614)
.+ ..|+.+....+ ||||||||+.. .+.+.+++.. ....... ...+|+ .... .... .. +... .|.. ..|
T Consensus 293 ~~--p~gl~Nss~~g~VGRnlmdh~~~-~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~i~~~~-~~~ 366 (544)
T TIGR02462 293 GR--PDPTNPPPLLPSLGRYITEQSMT-FCQIVLSTELVDSVRSDP-RGLDWW-KEKVANHMMKHPEDPLPIPFRD-PEP 366 (544)
T ss_pred cC--CCCcCCCCCCCCCCcchhcCCCc-cEEEEecchhhhhccCCc-cccccc-cccchhhhccccCCcccccccc-cCc
Confidence 32 23443332123 99999999985 4555554431 1000000 011111 0000 0000 00 0000 0000 001
Q ss_pred Ccceeecccccc--cccccccccc------CCCC-C--CceEEeecccccCcceEEEecc--CCCCCCCEEEeCCCCCHH
Q psy1040 423 GRSILSNTFNAL--FSNNNKEEDK------MPCG-R--RSIYARPTNLLPISRGRLVLRS--ADPFEYPKIHSNYLVMKQ 489 (614)
Q Consensus 423 ~~~~~~~~~~~~--~~~~~~~~~~------~~~~-~--~~~~~~~~~~~p~s~g~v~l~s--~d~~~~P~i~~~y~~~~~ 489 (614)
.... .+... |...+.+..+ +... . ..+.++.+.+ |..++||+|++ +|.+|+|++.++|..++.
T Consensus 367 ~~~~---~~~~~~~w~~~~~~~~~~~g~~~~~~~~~~~v~l~~~~e~l-P~~~NrV~Ld~~~~D~~G~P~~~i~~~~~~~ 442 (544)
T TIGR02462 367 QVTT---PFTEEHPWHTQIHRDAFSYGAVGPSIDSRVIVDLRFFGRTE-PKEENKLVFQDKVTDTYNMPQPTFDFRFSAA 442 (544)
T ss_pred cccc---ccccccccchhhhhhhhhcccccccccccceeeEEEEeccC-CCCCCeEEcCCCCcCCCCCeeEEEEEeCCHH
Confidence 0000 00000 1111100000 0000 1 1123344444 99999999975 699999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhchhhhhcccccccccCCCCCCCCCCCHHHHHHHHhccCCCcccccccccccCCCCCCCccCCC
Q psy1040 490 DIDVIIEGIRIIQKLTRTKALQKWDFQIDSTKMPECKHFEWDSNEYWECYIKTYTLPENHPGGTCKMGPADDYSSVVDAQ 569 (614)
Q Consensus 490 D~~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~p~~~~~~~~s~~~~~~~i~~~~~~~~H~~GT~rMG~~~d~~~VVD~~ 569 (614)
|++.+.++.+.+.+++ +.+|+.... ..+ . + .....+.|++||||||.+ +.++|||++
T Consensus 443 d~~~~~~~~~~~~~i~-----~~~G~~~~~-~~~----------~-~-----~~~~~~~H~~Gt~rMG~d-p~~sVvd~~ 499 (544)
T TIGR02462 443 DSKRARRMMTDMCNVA-----AKIGGYLPG-SLP----------Q-F-----MEPGLALHLAGTTRIGFD-EQTTVANTD 499 (544)
T ss_pred HHHHHHHHHHHHHHHH-----HHcCCCccc-ccc----------c-c-----cCCCccccCCCCeecCCC-CCCceECCC
Confidence 9999999999888874 456653211 000 0 0 012457899999999954 348999999
Q ss_pred CcEecCCCcEEeccCCCCCCCCcchHHHHHHHHHHHHHHHHhhhC
Q psy1040 570 LRIHGVPNLRVMDASIFPTNINSNPIATIIMIAEKGADMVKESWR 614 (614)
Q Consensus 570 lrV~gv~nL~V~DaSv~P~~~~~Np~~ti~aia~r~Ad~I~~~~~ 614 (614)
+||||++||||+|+|+||+.+++||++|+||+|+|+||+|+++++
T Consensus 500 ~rv~g~~NL~V~d~s~~Pt~~~~nPtlTi~ala~r~a~~i~~~~~ 544 (544)
T TIGR02462 500 SKVHNFKNLYVGGNGNIPTAFGANPTLTSMCYAIKSAEYIINNFG 544 (544)
T ss_pred CcEeCCCCeEEeccCcCCCCCCCCcHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999998864
No 7
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=100.00 E-value=3e-52 Score=428.38 Aligned_cols=289 Identities=41% Similarity=0.703 Sum_probs=233.5
Q ss_pred ccEEEECCCCchHHHHHHHhcCCCCeEEEecCCCCCCCcccccc-ccccccCCcccccceecccccccccC-CCeeeecC
Q psy1040 76 YDFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGPDEPTVTSVPG-FAASAVGTHLDWKYKTERNKYACLST-GGICEWPR 153 (614)
Q Consensus 76 yDvIVVGsG~aG~~~A~~Lae~~G~~VLlLEaG~~~~~~~~~p~-~~~~~~~~~~~w~~~~~~~~~~~~~~-~~~~~~~~ 153 (614)
|||||||||++|+++|.|||++++++|||||||+........+. .........++|.|.+.++. .+ ++.+.|++
T Consensus 1 yD~iIVGsG~~G~v~A~rLs~~~~~~VlvlEaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~ 76 (296)
T PF00732_consen 1 YDYIIVGSGAGGSVVASRLSEAGNKKVLVLEAGPRYPPEDSTPPSSFYQDFDSEYDWGYYSGPQP----FLNGRTINWPR 76 (296)
T ss_dssp EEEEEES-SHHHHHHHHHHTTSTTS-EEEEESSBSCTTSGHHGGGGGGGCTTTTTBBGEEECEEE----CTTTTSEEEEE
T ss_pred CCEEEECcCHHHHHHHHHHhhCCCCcEEEEEccccCccccchhhhccccccCccccccccccccc----ccccceeeeec
Confidence 89999999999999999999994489999999998755432222 22223456778888887765 55 77788999
Q ss_pred ceeeccccccCCceeecCChhhHHHHHHc-CCCCCChhhHHHHHHhhhcCCCCCCCCCCccCCCCCeee-eeCCCCCchh
Q psy1040 154 GKMLAGTGAMTGMMYTRSHPSIYDEWQRQ-GNPGWGFSDVLRYFIKSEHNLNRDQVDPEYHGYDGPLKV-QRFSSYPPIG 231 (614)
Q Consensus 154 g~~lGGsS~~n~~~~~r~~~~d~~~w~~~-g~~~w~~~~l~~y~~~~e~~~~~~~~~~~~~~~~g~l~v-~~~~~~~~~~ 231 (614)
|++|||+|.+|+|++.|+++.||+.|... |.++|+|+++.+||+++|.+..+. ...|+.++++.+ .......+..
T Consensus 77 G~~lGGsS~in~~~~~R~~~~df~~w~~~~g~~~w~~~~l~~~~~~~e~~~~~~---~~~~g~~~~~~v~~~~~~~~~~~ 153 (296)
T PF00732_consen 77 GKGLGGSSAINGGVYFRPSPSDFDEWAREFGADGWSWDDLEPYYDKAETFLGPS---SDLHGVDGPLPVSSSPPYPSPMN 153 (296)
T ss_dssp B-STTGGGGTS--BE-B--HHHHHHHHHTTTCTTGSHHHHHHHHHHHEEEHTTB---GGGSCBSSSEEEHHHCSCHCTHH
T ss_pred ceecCCcccccccccccCCcccchhhhhcccccccchhhHHHHHHHHHhhcccc---ccccccccccccccccCCCCHHH
Confidence 99999999999999999999999999987 778899999999999999887764 126788899988 4455567778
Q ss_pred HHHHHHHHHcCCCcC-CCCCCCcceeEEeeccccCCcccccccccchhhhcCCCeEEEcccEEEEEEEcCCCCeEEEEEE
Q psy1040 232 EDIIKAGKELGYASG-DFNGANQIGVNFAQVMVDNGVRSSTPRMFLRDKYKQDNLKVQLNAHVMKLNIDPKTKRALSVQF 310 (614)
Q Consensus 232 ~~~~~a~~~~G~~~~-d~~~~~~~g~~~~~~~~~~g~r~s~~~~~L~~~~~~~n~~I~~~~~V~~I~~d~~~~ra~GV~~ 310 (614)
..+.++++++|++.. +.+....+|++.....|..|.|+++..+||.++.+++|++|+++++|++|+++.++++|+||++
T Consensus 154 ~~~~~a~~~~G~~~~~~~~~~~~~g~~~~~~~~~~g~r~s~~~~~L~~a~~~~n~~l~~~~~V~~i~~~~~~~~a~gV~~ 233 (296)
T PF00732_consen 154 QALMDAAEELGIPVPQDFNGCDPCGFCMTGFNCPNGARSSAATTYLPPALKRPNLTLLTNARVTRIIFDGDGGRATGVEY 233 (296)
T ss_dssp HHHHHHHHHTTHHBCSCTTSSTCSEEEECEECECTTCBBHHHHHHHHHHTTTTTEEEEESEEEEEEEEETTSTEEEEEEE
T ss_pred HHHHHHHHHcCCccccccccccccccccccccccchhceehhhcccchhhccCCccEEcCcEEEEEeeeccccceeeeee
Confidence 889999999999944 7777777888776667899999999999999999999999999999999999766789999999
Q ss_pred EeCCCCc-eEEEEeccEEEEccCCCChHHHHHHhCCCCchhhhhcCCCccccccccccccccc
Q psy1040 311 KDTNTNE-IKTVKAKKEIILTAGAIGSPQLLMLSGVGPKSHLDELGIETISDLRVGYNLVHHV 372 (614)
Q Consensus 311 ~~~~~g~-~~~v~A~k~VVlaaG~i~sp~LLl~SGig~~~~l~~~gi~~~~dlpVG~nl~dH~ 372 (614)
.+.. +. ...+.+.|+||||||+++||+|||+|||||+++|+++||+++.|+|||+|||||+
T Consensus 234 ~~~~-~~~~~~~~~ak~VIlaAGai~Tp~LLl~SGiG~~~~L~~~gi~~~~~lpVG~nl~dH~ 295 (296)
T PF00732_consen 234 VDND-GGVQRRIVAAKEVILAAGAIGTPRLLLRSGIGPKDHLDALGIPVVVDLPVGRNLQDHP 295 (296)
T ss_dssp EETT-TSEEEEEEEEEEEEE-SHHHHHHHHHHHTTEE-HHHHHHTTHHHSEE-TTTECEB--E
T ss_pred eecC-CcceeeeccceeEEeccCCCCChhhhcccccccHHHHHHcCCCceeeCcchhchhccc
Confidence 9875 33 3344444699999999999999999999999999999999999999999999997
No 8
>PF05199 GMC_oxred_C: GMC oxidoreductase; InterPro: IPR007867 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. The function of this C-terminal conserved domain is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0055114 oxidation-reduction process; PDB: 3BG7_F 2IGM_D 3BLY_A 3BG6_H 3LSK_A 2IGO_A 3K4B_A 3K4L_B 2IGN_B 3K4M_H ....
Probab=100.00 E-value=4.2e-34 Score=261.33 Aligned_cols=143 Identities=44% Similarity=0.725 Sum_probs=118.4
Q ss_pred cCcceEEEeccCCCCCCCEEEeCCCCCHHHHHHHHHHHHHHHHHHhchhhhhccccccc-ccCCCCCCCCCCCHHHHHHH
Q psy1040 461 PISRGRLVLRSADPFEYPKIHSNYLVMKQDIDVIIEGIRIIQKLTRTKALQKWDFQIDS-TKMPECKHFEWDSNEYWECY 539 (614)
Q Consensus 461 p~s~g~v~l~s~d~~~~P~i~~~y~~~~~D~~~l~~~~~~~~~i~~~~~~~~~g~~~~~-~~~p~~~~~~~~s~~~~~~~ 539 (614)
|+|+|+|+|+++||++.|.|+++|+.++.|++.+.++++.+.+++++. +++++..... ...+.|......++++|+++
T Consensus 1 P~S~G~V~L~~~d~~~~p~i~~~y~~~~~D~~~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (144)
T PF05199_consen 1 PKSRGRVTLDSSDPFGQPLIDPNYLSDPRDLEALREGIKRARRILRAA-FEEIGAGELLPGPSPFCPDASLDSDEDLECY 79 (144)
T ss_dssp -SS-BEEEESSSSTTSEEEEE--TTSSHHHHHHHHHHHHHHHHHHTSG-GGGTEEEEEESCGCSCCGCSTTTCHHHHHHH
T ss_pred CCCCcEEEeCCCCCCCCcEEEeCCCCCHHHHHHHHHHHHHHHHHHhhh-hcccccccccccccccccccccccchhhhhh
Confidence 899999999999999999999999999999999999999999999887 7666543222 22233444566788999999
Q ss_pred HhccCCCcccccccccccCCCCCCCccCCCCcEecCCCcEEeccCCCCCCCCcchHHHHHHHHHHH
Q psy1040 540 IKTYTLPENHPGGTCKMGPADDYSSVVDAQLRIHGVPNLRVMDASIFPTNINSNPIATIIMIAEKG 605 (614)
Q Consensus 540 i~~~~~~~~H~~GT~rMG~~~d~~~VVD~~lrV~gv~nL~V~DaSv~P~~~~~Np~~ti~aia~r~ 605 (614)
++....+.+|++||||||++++. +|||++|||||++||||+|+||||+.+++||++|+||||+||
T Consensus 80 ~~~~~~~~~H~~Gt~~mG~~~~~-~VvD~~~rv~g~~nL~V~DaSv~P~~~~~np~~t~~ala~ra 144 (144)
T PF05199_consen 80 IRQNVGTSWHPSGTCRMGPDPDT-SVVDPDLRVHGVRNLRVADASVFPTSPGANPTLTIMALAERA 144 (144)
T ss_dssp HHHHGEECSS-BETT-BTSSTTT-TSB-TTSBBTTSBSEEE-SGGGSSS-SSSSSHHHHHHHHHHH
T ss_pred eeeccceecccccceeccccCCc-eeECCCCCeeeeeeEEECCCCcCCCCCCcCcHHHHHHHeeCC
Confidence 99999999999999999987765 999999999999999999999999999999999999999997
No 9
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.49 E-value=5.6e-13 Score=147.70 Aligned_cols=59 Identities=15% Similarity=0.234 Sum_probs=49.1
Q ss_pred hhhcCCCeEEEcccEEEEEEEcCCCCeEEEEEEEeCCCCceEEEEeccEEEEccCCCChHHHH
Q psy1040 278 DKYKQDNLKVQLNAHVMKLNIDPKTKRALSVQFKDTNTNEIKTVKAKKEIILTAGAIGSPQLL 340 (614)
Q Consensus 278 ~~~~~~n~~I~~~~~V~~I~~d~~~~ra~GV~~~~~~~g~~~~v~A~k~VVlaaG~i~sp~LL 340 (614)
..+++.|++|+++++|++|+.+ +++|+||.+... |+++.|+|+|.||||+|+|+...=|
T Consensus 225 ~~~~~~Gv~i~~~t~v~~Li~~--~g~V~GV~~~~~--g~~~~i~a~kaVILAtGGf~~n~em 283 (564)
T PRK12845 225 AGVLRAGIPIWTETSLVRLTDD--GGRVTGAVVDHR--GREVTVTARRGVVLAAGGFDHDMEM 283 (564)
T ss_pred HHHHHCCCEEEecCEeeEEEec--CCEEEEEEEEEC--CcEEEEEcCCEEEEecCCccccHHH
Confidence 3345679999999999999976 589999988765 7778899988999999999965433
No 10
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.48 E-value=4.1e-13 Score=149.73 Aligned_cols=63 Identities=17% Similarity=0.263 Sum_probs=51.7
Q ss_pred chhhhcCCCeEEEcccEEEEEEEcCCCCeEEEEEEEeCCCCceEEEEeccEEEEccCCCChHHHHH
Q psy1040 276 LRDKYKQDNLKVQLNAHVMKLNIDPKTKRALSVQFKDTNTNEIKTVKAKKEIILTAGAIGSPQLLM 341 (614)
Q Consensus 276 L~~~~~~~n~~I~~~~~V~~I~~d~~~~ra~GV~~~~~~~g~~~~v~A~k~VVlaaG~i~sp~LLl 341 (614)
|..++++.|++|++++.|++|+.|+ +++|+||.+... ++.++|+|+|.||||+|+|+...-|+
T Consensus 219 l~~~~~~~gv~i~~~~~~~~Li~d~-~g~V~Gv~~~~~--~~~~~i~a~~aVilAtGGf~~N~em~ 281 (584)
T PRK12835 219 LRLALKDAGVPLWLDSPMTELITDP-DGAVVGAVVERE--GRTLRIGARRGVILATGGFDHDMDWR 281 (584)
T ss_pred HHHHHHhCCceEEeCCEEEEEEECC-CCcEEEEEEEeC--CcEEEEEeceeEEEecCcccCCHHHH
Confidence 4445667899999999999999975 489999998765 78889999878999999998643333
No 11
>PRK07121 hypothetical protein; Validated
Probab=99.48 E-value=6.6e-13 Score=146.01 Aligned_cols=64 Identities=17% Similarity=0.357 Sum_probs=50.9
Q ss_pred chhhhcCCCeEEEcccEEEEEEEcCCCCeEEEEEEEeCCCCceEEEEeccEEEEccCCCChHHHHHH
Q psy1040 276 LRDKYKQDNLKVQLNAHVMKLNIDPKTKRALSVQFKDTNTNEIKTVKAKKEIILTAGAIGSPQLLML 342 (614)
Q Consensus 276 L~~~~~~~n~~I~~~~~V~~I~~d~~~~ra~GV~~~~~~~g~~~~v~A~k~VVlaaG~i~sp~LLl~ 342 (614)
|...+++.|++|+++++|++|+.++ +++++||++... ++...|+|+|.||||+|++...+-|+.
T Consensus 183 L~~~~~~~gv~i~~~~~v~~l~~~~-~g~v~Gv~~~~~--~~~~~i~a~k~VVlAtGg~~~N~em~~ 246 (492)
T PRK07121 183 LAKRAAALGVQIRYDTRATRLIVDD-DGRVVGVEARRY--GETVAIRARKGVVLAAGGFAMNREMVA 246 (492)
T ss_pred HHHHHHhCCCEEEeCCEEEEEEECC-CCCEEEEEEEeC--CcEEEEEeCCEEEECCCCcCcCHHHHH
Confidence 3444567799999999999999874 479999998765 777889995689999999986544443
No 12
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.48 E-value=2.3e-13 Score=151.20 Aligned_cols=61 Identities=13% Similarity=0.245 Sum_probs=50.7
Q ss_pred hhhhcCCCeEEEcccEEEEEEEcCCCCeEEEEEEEeCCCCceEEEEeccEEEEccCCCChHHHHH
Q psy1040 277 RDKYKQDNLKVQLNAHVMKLNIDPKTKRALSVQFKDTNTNEIKTVKAKKEIILTAGAIGSPQLLM 341 (614)
Q Consensus 277 ~~~~~~~n~~I~~~~~V~~I~~d~~~~ra~GV~~~~~~~g~~~~v~A~k~VVlaaG~i~sp~LLl 341 (614)
...+++.|++|+++++|++|+.+ +++|+||++... |+.++|+|+|.||||+|++....=|+
T Consensus 215 ~~~~~~~gv~i~~~~~v~~Li~~--~g~v~Gv~~~~~--g~~~~i~A~~aVIlAtGG~~~N~em~ 275 (557)
T PRK12844 215 LEAALAAGVPLWTNTPLTELIVE--DGRVVGVVVVRD--GREVLIRARRGVLLASGGFGHNAEMR 275 (557)
T ss_pred HHHHHhCCCEEEeCCEEEEEEEe--CCEEEEEEEEEC--CeEEEEEecceEEEecCCccCCHHHH
Confidence 34456779999999999999987 689999998765 77889999778999999998754443
No 13
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=99.47 E-value=3.5e-13 Score=148.57 Aligned_cols=61 Identities=20% Similarity=0.368 Sum_probs=50.0
Q ss_pred chhhhcCCCeEEEcccEEEEEEEcCCCCeEEEEEEEeCCCCceEEEEeccEEEEccCCCChHHHH
Q psy1040 276 LRDKYKQDNLKVQLNAHVMKLNIDPKTKRALSVQFKDTNTNEIKTVKAKKEIILTAGAIGSPQLL 340 (614)
Q Consensus 276 L~~~~~~~n~~I~~~~~V~~I~~d~~~~ra~GV~~~~~~~g~~~~v~A~k~VVlaaG~i~sp~LL 340 (614)
+..+.+++|++|+++++|++|+.+ +++|+||++... |+.++|+|+|.||||||+++..+-|
T Consensus 180 ~~~~~~~~gv~i~~~t~~~~Li~~--~g~v~Gv~~~~~--g~~~~i~A~k~VIlAtGG~~~n~~m 240 (513)
T PRK12837 180 LAALARFPNARLRLNTPLVELVVE--DGRVVGAVVERG--GERRRVRARRGVLLAAGGFEQNDDM 240 (513)
T ss_pred HHHHHhCCCCEEEeCCEEEEEEec--CCEEEEEEEEEC--CcEEEEEeCceEEEeCCCccCCHHH
Confidence 334445579999999999999987 689999998765 7888999987999999999754433
No 14
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=99.43 E-value=3.1e-12 Score=138.03 Aligned_cols=60 Identities=25% Similarity=0.437 Sum_probs=45.9
Q ss_pred hhhhcCCCeEEEcccEEEEEEEcCCCCeEEEEEEEeCCCCceEEEEeccEEEEccCCCChHHHH
Q psy1040 277 RDKYKQDNLKVQLNAHVMKLNIDPKTKRALSVQFKDTNTNEIKTVKAKKEIILTAGAIGSPQLL 340 (614)
Q Consensus 277 ~~~~~~~n~~I~~~~~V~~I~~d~~~~ra~GV~~~~~~~g~~~~v~A~k~VVlaaG~i~sp~LL 340 (614)
...+++.+++|+++++|++|+.+ +++|+||++.+..+|+.++|+|+ .||||+|++.. .++
T Consensus 148 ~~~~~~~gv~i~~~~~~~~Li~e--~g~V~Gv~~~~~~~g~~~~i~A~-aVIlAtGG~~~-~~~ 207 (417)
T PF00890_consen 148 AKAAEEAGVDIRFNTRVTDLITE--DGRVTGVVAENPADGEFVRIKAK-AVILATGGFGG-ELL 207 (417)
T ss_dssp HHHHHHTTEEEEESEEEEEEEEE--TTEEEEEEEEETTTCEEEEEEES-EEEE----BGG-HHH
T ss_pred HHHHhhcCeeeeccceeeeEEEe--CCceeEEEEEECCCCeEEEEeee-EEEeccCcccc-ccc
Confidence 33445667999999999999998 67999999994433889999997 89999999998 443
No 15
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=99.41 E-value=2.9e-12 Score=140.99 Aligned_cols=59 Identities=22% Similarity=0.398 Sum_probs=46.6
Q ss_pred hhhcCCCeEEEcccEEEEEEEcCCCCeEEEEEEEeCCCCceEEEEeccEEEEccCCCChHHHH
Q psy1040 278 DKYKQDNLKVQLNAHVMKLNIDPKTKRALSVQFKDTNTNEIKTVKAKKEIILTAGAIGSPQLL 340 (614)
Q Consensus 278 ~~~~~~n~~I~~~~~V~~I~~d~~~~ra~GV~~~~~~~g~~~~v~A~k~VVlaaG~i~sp~LL 340 (614)
..+++.+++|++++.|++|+.+ +++|+||.+...+ ++..+|+|+ .||||+|++....-+
T Consensus 198 ~~~~~~gv~i~~~t~v~~l~~~--~g~V~Gv~~~~~~-g~~~~i~a~-~VVlAtGG~~~n~~m 256 (506)
T PRK06481 198 KNVQERKIPLFVNADVTKITEK--DGKVTGVKVKING-KETKTISSK-AVVVTTGGFGANKDM 256 (506)
T ss_pred HHHHHcCCeEEeCCeeEEEEec--CCEEEEEEEEeCC-CeEEEEecC-eEEEeCCCcccCHHH
Confidence 3345678999999999999876 6899999987642 566789995 899999998865433
No 16
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=99.41 E-value=3.7e-12 Score=139.36 Aligned_cols=68 Identities=19% Similarity=0.312 Sum_probs=53.3
Q ss_pred chhhhcCCCeEEEcccEEEEEEEcCCCCeEEEEEEEeCCCCceEEEEeccEEEEccCCCChHHHHHHhCCCC
Q psy1040 276 LRDKYKQDNLKVQLNAHVMKLNIDPKTKRALSVQFKDTNTNEIKTVKAKKEIILTAGAIGSPQLLMLSGVGP 347 (614)
Q Consensus 276 L~~~~~~~n~~I~~~~~V~~I~~d~~~~ra~GV~~~~~~~g~~~~v~A~k~VVlaaG~i~sp~LLl~SGig~ 347 (614)
|...+++.|++|+++++|++|+.+ +++++||.+...+ ++...++|+ .||||+|++.+.+.++.+-.++
T Consensus 137 l~~~~~~~gv~i~~~t~v~~l~~~--~g~v~gv~~~~~~-g~~~~i~a~-~VIlAtGg~~~n~~~~~~~~~~ 204 (466)
T PRK08274 137 LYRSAERLGVEIRYDAPVTALELD--DGRFVGARAGSAA-GGAERIRAK-AVVLAAGGFESNREWLREAWGQ 204 (466)
T ss_pred HHHHHHHCCCEEEcCCEEEEEEec--CCeEEEEEEEccC-CceEEEECC-EEEECCCCCCCCHHHHHhhcCC
Confidence 333445679999999999999986 6899999985332 666788995 7999999999888777665543
No 17
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=99.41 E-value=6.4e-12 Score=139.41 Aligned_cols=62 Identities=16% Similarity=0.205 Sum_probs=49.7
Q ss_pred hcCCCeEEEcccEEEEEEEcCCCCeEEEEEEEeCCCCceEEEEeccEEEEccCCCChHHHHHHhCC
Q psy1040 280 YKQDNLKVQLNAHVMKLNIDPKTKRALSVQFKDTNTNEIKTVKAKKEIILTAGAIGSPQLLMLSGV 345 (614)
Q Consensus 280 ~~~~n~~I~~~~~V~~I~~d~~~~ra~GV~~~~~~~g~~~~v~A~k~VVlaaG~i~sp~LLl~SGi 345 (614)
+.+.|++|+++++|++|..+ +++++||++.+..+++..+|+|+ .||+|||++ +.+|+.+.|+
T Consensus 159 A~~~Ga~i~~~t~V~~i~~~--~~~v~gv~v~d~~~g~~~~i~A~-~VVnAaG~w-a~~l~~~~g~ 220 (546)
T PRK11101 159 AKEHGAQILTYHEVTGLIRE--GDTVCGVRVRDHLTGETQEIHAP-VVVNAAGIW-GQHIAEYADL 220 (546)
T ss_pred HHhCCCEEEeccEEEEEEEc--CCeEEEEEEEEcCCCcEEEEECC-EEEECCChh-HHHHHHhcCC
Confidence 35679999999999999987 67999999876444666789996 699999976 6777665553
No 18
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.38 E-value=4.8e-12 Score=140.90 Aligned_cols=53 Identities=19% Similarity=0.214 Sum_probs=45.2
Q ss_pred hcCCCeEEEcccEEEEEEEcCCCCeEEEEEEEeCCCCceEEEEeccEEEEccCCCC
Q psy1040 280 YKQDNLKVQLNAHVMKLNIDPKTKRALSVQFKDTNTNEIKTVKAKKEIILTAGAIG 335 (614)
Q Consensus 280 ~~~~n~~I~~~~~V~~I~~d~~~~ra~GV~~~~~~~g~~~~v~A~k~VVlaaG~i~ 335 (614)
+.+.|++|++++.|++|+.+ +++|+||.+.+..+|+.+.++| |.||||+|+++
T Consensus 146 ~~~~gv~i~~~~~~~~Li~~--~g~v~Gv~~~~~~~g~~~~i~A-kaVVLATGG~~ 198 (566)
T PRK06452 146 TSGLNVDFYNEWFSLDLVTD--NKKVVGIVAMQMKTLTPFFFKT-KAVVLATGGMG 198 (566)
T ss_pred HHhCCCEEEeCcEEEEEEEE--CCEEEEEEEEECCCCeEEEEEe-CeEEECCCccc
Confidence 34568999999999999997 6899999988754377788999 58999999997
No 19
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=99.36 E-value=2.8e-12 Score=134.81 Aligned_cols=60 Identities=30% Similarity=0.514 Sum_probs=44.5
Q ss_pred chhhhcCCCeEEEcccEEEEEEEcCCCCeEEEEEEEeCCCCceEEEEeccEEEEccCCCChHHHHHHhCC
Q psy1040 276 LRDKYKQDNLKVQLNAHVMKLNIDPKTKRALSVQFKDTNTNEIKTVKAKKEIILTAGAIGSPQLLMLSGV 345 (614)
Q Consensus 276 L~~~~~~~n~~I~~~~~V~~I~~d~~~~ra~GV~~~~~~~g~~~~v~A~k~VVlaaG~i~sp~LLl~SGi 345 (614)
|...+.+.|++|+++++|++|..+ +++++||++.++ +++|+ .||+|+|. .+++|+..+|+
T Consensus 153 l~~~~~~~Gv~i~~~~~V~~i~~~--~~~v~gv~~~~g------~i~ad-~vV~a~G~-~s~~l~~~~~~ 212 (358)
T PF01266_consen 153 LAAEAQRAGVEIRTGTEVTSIDVD--GGRVTGVRTSDG------EIRAD-RVVLAAGA-WSPQLLPLLGL 212 (358)
T ss_dssp HHHHHHHTT-EEEESEEEEEEEEE--TTEEEEEEETTE------EEEEC-EEEE--GG-GHHHHHHTTTT
T ss_pred hHHHHHHhhhhccccccccchhhc--cccccccccccc------ccccc-eeEecccc-cceeeeecccc
Confidence 333445669999999999999998 788999997554 59996 69999996 57887776653
No 20
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.35 E-value=1e-11 Score=138.73 Aligned_cols=56 Identities=14% Similarity=0.171 Sum_probs=46.0
Q ss_pred hhcCCCeEEEcccEEEEEEEcCCCCeEEEEEEEeCCCCceEEEEeccEEEEccCCCCh
Q psy1040 279 KYKQDNLKVQLNAHVMKLNIDPKTKRALSVQFKDTNTNEIKTVKAKKEIILTAGAIGS 336 (614)
Q Consensus 279 ~~~~~n~~I~~~~~V~~I~~d~~~~ra~GV~~~~~~~g~~~~v~A~k~VVlaaG~i~s 336 (614)
.+.+.|++|++++.|++|+.++ +++|+||.+.+..+|+...|+| |.||||+|++..
T Consensus 152 ~~~~~gi~i~~~~~~~~Li~~~-~g~v~Gv~~~~~~~g~~~~i~A-kaVILATGG~~~ 207 (588)
T PRK08958 152 QNLKNHTTIFSEWYALDLVKNQ-DGAVVGCTAICIETGEVVYFKA-RATVLATGGAGR 207 (588)
T ss_pred HhhhcCCEEEeCcEEEEEEECC-CCEEEEEEEEEcCCCcEEEEEc-CeEEECCCCccc
Confidence 3446789999999999999863 5899999986533388888999 489999999875
No 21
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=99.35 E-value=1.4e-11 Score=137.03 Aligned_cols=35 Identities=40% Similarity=0.615 Sum_probs=33.3
Q ss_pred CcccEEEECCCCchHHHHHHHhcCCCCeEEEecCCC
Q psy1040 74 EEYDFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGP 109 (614)
Q Consensus 74 ~~yDvIVVGsG~aG~~~A~~Lae~~G~~VLlLEaG~ 109 (614)
.++||||||+|.||+++|..++++ |.+|+||||++
T Consensus 3 ~~~DVvVVG~G~AGl~AAl~Aa~~-G~~VivlEK~~ 37 (549)
T PRK12834 3 MDADVIVVGAGLAGLVAAAELADA-GKRVLLLDQEN 37 (549)
T ss_pred ccCCEEEECcCHHHHHHHHHHHHC-CCeEEEEeCCC
Confidence 469999999999999999999999 99999999996
No 22
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.34 E-value=8.6e-12 Score=138.73 Aligned_cols=64 Identities=20% Similarity=0.364 Sum_probs=52.3
Q ss_pred chhhhcCCCeEEEcccEEEEEEEcCCCCeEEEEEEEeCCCCceEEEEeccEEEEccCCCChHHHHHHh
Q psy1040 276 LRDKYKQDNLKVQLNAHVMKLNIDPKTKRALSVQFKDTNTNEIKTVKAKKEIILTAGAIGSPQLLMLS 343 (614)
Q Consensus 276 L~~~~~~~n~~I~~~~~V~~I~~d~~~~ra~GV~~~~~~~g~~~~v~A~k~VVlaaG~i~sp~LLl~S 343 (614)
|...+++.|++|++++.|++|+.+ +++|+||++... ++...|+|+|.||||+|++.+.+-|+..
T Consensus 214 L~~~~~~~gv~v~~~t~v~~l~~~--~g~v~Gv~~~~~--g~~~~i~A~~~VIlAtGG~~~n~~m~~~ 277 (557)
T PRK07843 214 LRIGLQRAGVPVLLNTPLTDLYVE--DGRVTGVHAAES--GEPQLIRARRGVILASGGFEHNEQMRAK 277 (557)
T ss_pred HHHHHHcCCCEEEeCCEEEEEEEe--CCEEEEEEEEeC--CcEEEEEeceeEEEccCCcCcCHHHHHH
Confidence 334456789999999999999987 679999998765 7788899977899999999986655543
No 23
>PRK06175 L-aspartate oxidase; Provisional
Probab=99.33 E-value=1.1e-11 Score=133.55 Aligned_cols=54 Identities=19% Similarity=0.274 Sum_probs=44.0
Q ss_pred hhhcCCCeEEEcccEEEEEEEcCCCCeEEEEEEEeCCCCceEEEEeccEEEEccCCCCh
Q psy1040 278 DKYKQDNLKVQLNAHVMKLNIDPKTKRALSVQFKDTNTNEIKTVKAKKEIILTAGAIGS 336 (614)
Q Consensus 278 ~~~~~~n~~I~~~~~V~~I~~d~~~~ra~GV~~~~~~~g~~~~v~A~k~VVlaaG~i~s 336 (614)
.+.++.|++|++++.|++|+.+ +++++||.+... ++.++++|+ .||||+|++..
T Consensus 137 ~~~~~~gV~i~~~t~v~~Li~~--~~~v~Gv~~~~~--g~~~~i~Ak-~VILAtGG~~~ 190 (433)
T PRK06175 137 KVKKRKNITIIENCYLVDIIEN--DNTCIGAICLKD--NKQINIYSK-VTILATGGIGG 190 (433)
T ss_pred HHHhcCCCEEEECcEeeeeEec--CCEEEEEEEEEC--CcEEEEEcC-eEEEccCcccc
Confidence 3445679999999999999887 579999887655 666789995 79999999764
No 24
>PLN02815 L-aspartate oxidase
Probab=99.33 E-value=1.2e-11 Score=137.54 Aligned_cols=57 Identities=18% Similarity=0.196 Sum_probs=45.3
Q ss_pred hhcCCCeEEEcccEEEEEEEcCCCC--eEEEEEEEeCCCCceEEEEeccEEEEccCCCCh
Q psy1040 279 KYKQDNLKVQLNAHVMKLNIDPKTK--RALSVQFKDTNTNEIKTVKAKKEIILTAGAIGS 336 (614)
Q Consensus 279 ~~~~~n~~I~~~~~V~~I~~d~~~~--ra~GV~~~~~~~g~~~~v~A~k~VVlaaG~i~s 336 (614)
+.+.+|++|++++.|++|+.+++++ +|+||.+.+..+|+...|.| |.||||+|+++.
T Consensus 165 ~~~~~~i~i~~~~~~~~Li~~~~g~~~~v~Gv~~~~~~~g~~~~i~A-kaVILATGG~g~ 223 (594)
T PLN02815 165 VKNDPNITFFEHHFAIDLLTSQDGGSIVCHGADVLDTRTGEVVRFIS-KVTLLASGGAGH 223 (594)
T ss_pred HHhcCCCEEEeceEhheeeeecCCCccEEEEEEEEEcCCCeEEEEEe-ceEEEcCCccee
Confidence 3345699999999999999864334 49999987543377888999 589999999964
No 25
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=99.32 E-value=1.4e-11 Score=138.35 Aligned_cols=57 Identities=12% Similarity=0.189 Sum_probs=46.3
Q ss_pred hhhcCCCeEEEcccEEEEEEEcCCCCeEEEEEEEeCCCCceEEEEeccEEEEccCCCCh
Q psy1040 278 DKYKQDNLKVQLNAHVMKLNIDPKTKRALSVQFKDTNTNEIKTVKAKKEIILTAGAIGS 336 (614)
Q Consensus 278 ~~~~~~n~~I~~~~~V~~I~~d~~~~ra~GV~~~~~~~g~~~~v~A~k~VVlaaG~i~s 336 (614)
..+.+.|++|++++.|++|+.++ +++|+||.+.+..+|+.+.|+|+ .||||+|++..
T Consensus 174 ~~a~~~gv~i~~~~~~~~Li~~~-~g~v~Gv~~~~~~~g~~~~i~Ak-aVVLATGG~~~ 230 (617)
T PTZ00139 174 GQSLKYDCNFFIEYFALDLIMDE-DGECRGVIAMSMEDGSIHRFRAH-YTVIATGGYGR 230 (617)
T ss_pred HHHHhCCCEEEeceEEEEEEECC-CCEEEEEEEEECCCCeEEEEECC-cEEEeCCCCcc
Confidence 33456799999999999999843 58999999866433888889995 89999999875
No 26
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=99.32 E-value=7.5e-12 Score=135.90 Aligned_cols=60 Identities=28% Similarity=0.398 Sum_probs=46.5
Q ss_pred chhhhcCCCeEEEcccEEEEEEEcCCCCeEEEEEEEeCCCCceEEEEeccEEEEccCCCChHH
Q psy1040 276 LRDKYKQDNLKVQLNAHVMKLNIDPKTKRALSVQFKDTNTNEIKTVKAKKEIILTAGAIGSPQ 338 (614)
Q Consensus 276 L~~~~~~~n~~I~~~~~V~~I~~d~~~~ra~GV~~~~~~~g~~~~v~A~k~VVlaaG~i~sp~ 338 (614)
|...+++.|++|++++.|++|+.++ +++++||++...+ ++...+.++ .||||+|++....
T Consensus 136 l~~~~~~~gv~i~~~~~v~~l~~~~-~g~v~Gv~~~~~~-g~~~~~~a~-~VVlAtGg~~~n~ 195 (439)
T TIGR01813 136 LYKKAKKEGIDTRLNSKVEDLIQDD-QGTVVGVVVKGKG-KGIYIKAAK-AVVLATGGFGSNK 195 (439)
T ss_pred HHHHHHHcCCEEEeCCEeeEeEECC-CCcEEEEEEEeCC-CeEEEEecc-eEEEecCCCCCCH
Confidence 4444566789999999999999864 4789999987652 555567774 8999999987643
No 27
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=99.32 E-value=1.5e-11 Score=137.95 Aligned_cols=55 Identities=16% Similarity=0.247 Sum_probs=45.6
Q ss_pred hcCCCeEEEcccEEEEEEEcCCCCeEEEEEEEeCCCCceEEEEeccEEEEccCCCCh
Q psy1040 280 YKQDNLKVQLNAHVMKLNIDPKTKRALSVQFKDTNTNEIKTVKAKKEIILTAGAIGS 336 (614)
Q Consensus 280 ~~~~n~~I~~~~~V~~I~~d~~~~ra~GV~~~~~~~g~~~~v~A~k~VVlaaG~i~s 336 (614)
+.+.|++|+.++.|++|+.++ +++|+||.+.+..+|+...|+|+ .||||+|+++.
T Consensus 197 a~~~gv~i~~~~~~~~Li~~~-~g~v~Gv~~~~~~~g~~~~i~Ak-aVILATGG~g~ 251 (635)
T PLN00128 197 AMKHNTQFFVEYFALDLIMDS-DGACQGVIALNMEDGTLHRFRAH-STILATGGYGR 251 (635)
T ss_pred HHhCCCEEEEeeEEEEEEEcC-CCEEEEEEEEEcCCCeEEEEEcC-eEEECCCCCcc
Confidence 345689999999999999863 47999999876433888899995 89999999975
No 28
>PRK07395 L-aspartate oxidase; Provisional
Probab=99.31 E-value=1.4e-11 Score=136.55 Aligned_cols=53 Identities=23% Similarity=0.404 Sum_probs=44.2
Q ss_pred cCCCeEEEcccEEEEEEEcCCCCeEEEEEEEeCCCCceEEEEeccEEEEccCCCCh
Q psy1040 281 KQDNLKVQLNAHVMKLNIDPKTKRALSVQFKDTNTNEIKTVKAKKEIILTAGAIGS 336 (614)
Q Consensus 281 ~~~n~~I~~~~~V~~I~~d~~~~ra~GV~~~~~~~g~~~~v~A~k~VVlaaG~i~s 336 (614)
+++|++|++++.|++|+.++++++|+||.+..+ |+...++|+ .||||+|+++.
T Consensus 146 ~~~gi~i~~~~~v~~Li~~~~~g~v~Gv~~~~~--g~~~~i~Ak-aVILATGG~~~ 198 (553)
T PRK07395 146 QRPNIEIISQALALSLWLEPETGRCQGISLLYQ--GQITWLRAG-AVILATGGGGQ 198 (553)
T ss_pred hcCCcEEEECcChhhheecCCCCEEEEEEEEEC--CeEEEEEcC-EEEEcCCCCcc
Confidence 456999999999999998743489999988765 777788995 89999999753
No 29
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.30 E-value=3.3e-11 Score=135.63 Aligned_cols=55 Identities=20% Similarity=0.337 Sum_probs=46.2
Q ss_pred hhcCCCeEEEcccEEEEEEEcCCCCeEEEEEEEeCCCCceEEEEeccEEEEccCCCCh
Q psy1040 279 KYKQDNLKVQLNAHVMKLNIDPKTKRALSVQFKDTNTNEIKTVKAKKEIILTAGAIGS 336 (614)
Q Consensus 279 ~~~~~n~~I~~~~~V~~I~~d~~~~ra~GV~~~~~~~g~~~~v~A~k~VVlaaG~i~s 336 (614)
.+++.|++|++++.|++|+.+ +++|+||.+.+..+|+...+.|+ .||||+|+++.
T Consensus 179 ~~~~~gV~i~~~t~v~~Li~d--~g~V~GV~~~~~~~g~~~~i~Ak-aVVLATGG~g~ 233 (640)
T PRK07573 179 QIAAGTVKMYTRTEMLDLVVV--DGRARGIVARNLVTGEIERHTAD-AVVLATGGYGN 233 (640)
T ss_pred HHHhcCCEEEeceEEEEEEEe--CCEEEEEEEEECCCCcEEEEECC-EEEECCCCccc
Confidence 345679999999999999987 58999999876433777789995 89999999875
No 30
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.30 E-value=2.5e-11 Score=136.01 Aligned_cols=57 Identities=14% Similarity=0.232 Sum_probs=46.3
Q ss_pred hhhcCCCeEEEcccEEEEEEEcCCCCeEEEEEEEeCCCCceEEEEeccEEEEccCCCCh
Q psy1040 278 DKYKQDNLKVQLNAHVMKLNIDPKTKRALSVQFKDTNTNEIKTVKAKKEIILTAGAIGS 336 (614)
Q Consensus 278 ~~~~~~n~~I~~~~~V~~I~~d~~~~ra~GV~~~~~~~g~~~~v~A~k~VVlaaG~i~s 336 (614)
..+.+.|++|++++.|++|+.++ +++|+||.+.+..+|+.+.|.|+ .||||+|+++.
T Consensus 157 ~~~~~~gi~i~~~~~v~~Li~~~-~g~v~Gv~~~~~~~g~~~~i~Ak-aVVLATGG~~~ 213 (598)
T PRK09078 157 QQSLKHNAEFFIEYFALDLIMDD-GGVCRGVVAWNLDDGTLHRFRAH-MVVLATGGYGR 213 (598)
T ss_pred HHHhhcCCEEEEeEEEEEEEEcC-CCEEEEEEEEECCCCcEEEEEcC-EEEECCCCCcc
Confidence 33446789999999999999873 37999999865333788899995 89999999975
No 31
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.29 E-value=3.3e-11 Score=133.94 Aligned_cols=59 Identities=25% Similarity=0.404 Sum_probs=46.1
Q ss_pred chhhhcCCCeEEEcccEEEEEEEcCCCCeEEEEEEEeCCCCceEEEEeccEEEEccCCCCh
Q psy1040 276 LRDKYKQDNLKVQLNAHVMKLNIDPKTKRALSVQFKDTNTNEIKTVKAKKEIILTAGAIGS 336 (614)
Q Consensus 276 L~~~~~~~n~~I~~~~~V~~I~~d~~~~ra~GV~~~~~~~g~~~~v~A~k~VVlaaG~i~s 336 (614)
|...+.+.|++|++++.|++|+.++ +++|+||.+.+..+|+.+.|+|+ .||||+|++..
T Consensus 140 L~~~~~~~gv~i~~~t~v~~Li~~~-~~~v~Gv~~~~~~~g~~~~i~Ak-aVIlATGG~~~ 198 (543)
T PRK06263 140 LMEYLIKERIKILEEVMAIKLIVDE-NREVIGAIFLDLRNGEIFPIYAK-ATILATGGAGQ 198 (543)
T ss_pred HHHHHhcCCCEEEeCeEeeeeEEeC-CcEEEEEEEEECCCCcEEEEEcC-cEEECCCCCCC
Confidence 3334456899999999999999873 45699998876222777889994 89999999874
No 32
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.28 E-value=4.9e-11 Score=133.39 Aligned_cols=51 Identities=18% Similarity=0.166 Sum_probs=42.7
Q ss_pred CeEEEcccEEEEEEEcCCCCeEEEEEEEeCCCCceEEEEeccEEEEccCCCCh
Q psy1040 284 NLKVQLNAHVMKLNIDPKTKRALSVQFKDTNTNEIKTVKAKKEIILTAGAIGS 336 (614)
Q Consensus 284 n~~I~~~~~V~~I~~d~~~~ra~GV~~~~~~~g~~~~v~A~k~VVlaaG~i~s 336 (614)
+++|+.++.|++|+.++ +++|+||.+.+..+++.+.+.|+ .||||+|++..
T Consensus 151 ~i~i~~~~~~~~Li~~~-~g~v~Gv~~~~~~~g~~~~i~Ak-aVILATGG~~~ 201 (589)
T PRK08641 151 LVTKYEGWEFLGAVLDD-EGVCRGIVAQDLFTMEIESFPAD-AVIMATGGPGI 201 (589)
T ss_pred CcEEEeeEEEEEEEECC-CCEEEEEEEEECCCCcEEEEECC-EEEECCCCCcC
Confidence 48999999999999863 58999999987543677788995 89999999875
No 33
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=99.28 E-value=1.7e-11 Score=146.63 Aligned_cols=55 Identities=16% Similarity=0.334 Sum_probs=45.2
Q ss_pred CCeEEEcccEEEEEEEcCC----C---CeEEEEEEEeC--CCCceEEEEeccEEEEccCCCChHH
Q psy1040 283 DNLKVQLNAHVMKLNIDPK----T---KRALSVQFKDT--NTNEIKTVKAKKEIILTAGAIGSPQ 338 (614)
Q Consensus 283 ~n~~I~~~~~V~~I~~d~~----~---~ra~GV~~~~~--~~g~~~~v~A~k~VVlaaG~i~sp~ 338 (614)
.|++|+++++|++|+.+++ + ++|+||++.+. .+|+.+.|+| |.||||+|+|+...
T Consensus 560 ~gv~i~~~t~~~~LI~d~~~~~~G~~~~~V~Gv~~~~~~~~~g~~~~i~A-kaVILATGGf~~N~ 623 (1167)
T PTZ00306 560 GRVTIMTETTVTSLLSESSARPDGVREIRVTGVRYKQASDASGQVMDLLA-DAVILATGGFSNDH 623 (1167)
T ss_pred CCcEEEECCEEEEEEecCCcccCCCccceEEEEEEEecccCCCcEEEEEe-ceEEEecCCcccCc
Confidence 5899999999999999742 1 38999999864 1278889999 58999999998743
No 34
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=99.28 E-value=3.3e-11 Score=134.76 Aligned_cols=60 Identities=10% Similarity=0.193 Sum_probs=48.3
Q ss_pred hhhcCCCeEEEcccEEEEEEEcCCCCeEEEEEEEeCCCCceEEEEeccEEEEccCCCChHHHHH
Q psy1040 278 DKYKQDNLKVQLNAHVMKLNIDPKTKRALSVQFKDTNTNEIKTVKAKKEIILTAGAIGSPQLLM 341 (614)
Q Consensus 278 ~~~~~~n~~I~~~~~V~~I~~d~~~~ra~GV~~~~~~~g~~~~v~A~k~VVlaaG~i~sp~LLl 341 (614)
...++.|++|++++.|++|+.+ +++|+||.+.+. +....++++|.||||+|++....-++
T Consensus 222 ~~~~~~Gv~i~~~~~v~~l~~~--~g~V~GV~~~~~--~~~~~i~a~k~VVlAtGg~~~n~~~~ 281 (574)
T PRK12842 222 KSALDLGIPILTGTPARELLTE--GGRVVGARVIDA--GGERRITARRGVVLACGGFSHDLARI 281 (574)
T ss_pred HHHHhCCCEEEeCCEEEEEEee--CCEEEEEEEEcC--CceEEEEeCCEEEEcCCCccchHHHH
Confidence 3445789999999999999987 689999998765 44567889778999999997544443
No 35
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.27 E-value=4.7e-11 Score=133.46 Aligned_cols=58 Identities=19% Similarity=0.348 Sum_probs=45.8
Q ss_pred chhhhcCCCeEEEcccEEEEEEEcCCCCeEEEEEEEeCCCCceEEEEeccEEEEccCCCCh
Q psy1040 276 LRDKYKQDNLKVQLNAHVMKLNIDPKTKRALSVQFKDTNTNEIKTVKAKKEIILTAGAIGS 336 (614)
Q Consensus 276 L~~~~~~~n~~I~~~~~V~~I~~d~~~~ra~GV~~~~~~~g~~~~v~A~k~VVlaaG~i~s 336 (614)
|...+.+.|++|++++.|++|+.+ +++|.||...+..+|+...++|+ .||||+|++..
T Consensus 141 L~~~~~~~gi~i~~~t~v~~L~~~--~g~v~Gv~~~~~~~g~~~~i~Ak-aVVlATGG~~~ 198 (575)
T PRK05945 141 LVNNLRRYGVTIYDEWYVMRLILE--DNQAKGVVMYHIADGRLEVVRAK-AVMFATGGYGR 198 (575)
T ss_pred HHHHHhhCCCEEEeCcEEEEEEEE--CCEEEEEEEEEcCCCeEEEEECC-EEEECCCCCcC
Confidence 334445679999999999999987 68999998755323776789995 89999999864
No 36
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=99.26 E-value=4.5e-11 Score=133.70 Aligned_cols=62 Identities=15% Similarity=0.203 Sum_probs=49.7
Q ss_pred chhhhcCCCeEEEcccEEEEEEEcCCCCeEEEEEEEeCCCCceEEEEeccEEEEccCCCChHHHHH
Q psy1040 276 LRDKYKQDNLKVQLNAHVMKLNIDPKTKRALSVQFKDTNTNEIKTVKAKKEIILTAGAIGSPQLLM 341 (614)
Q Consensus 276 L~~~~~~~n~~I~~~~~V~~I~~d~~~~ra~GV~~~~~~~g~~~~v~A~k~VVlaaG~i~sp~LLl 341 (614)
|...+++.|++|+++++|++|+.+ +++|+||.+... ++.++|+|+|.||||+|++....-++
T Consensus 223 L~~~a~~~Gv~i~~~t~v~~l~~~--~g~v~GV~~~~~--~~~~~i~a~k~VVlAtGg~~~n~~~~ 284 (581)
T PRK06134 223 LLKSAEDLGVRIWESAPARELLRE--DGRVAGAVVETP--GGLQEIRARKGVVLAAGGFPHDPARR 284 (581)
T ss_pred HHHHHHhCCCEEEcCCEEEEEEEe--CCEEEEEEEEEC--CcEEEEEeCCEEEEcCCCcccCHHHH
Confidence 344456779999999999999987 689999998765 56678999568999999997654443
No 37
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=99.26 E-value=6e-11 Score=127.59 Aligned_cols=53 Identities=28% Similarity=0.385 Sum_probs=41.1
Q ss_pred HhhcccCCCCCCCCCCccccCCCCCCcccEEEECCCCchHHHHHHHhcCCCC-eEEEecCCC
Q psy1040 49 LRTQCDLADPCGRASSNLVRNRPLQEEYDFVVVGGGVAGPVVAGRLVENPNW-KVLLLEAGP 109 (614)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIVVGsG~aG~~~A~~Lae~~G~-~VLlLEaG~ 109 (614)
++++..+++.+-.... ...|||||||||..|+++|++|++..|+ +|+||||+.
T Consensus 12 ~~~~~~~~~~~~~~~~--------~~~~dvvIIGgGi~G~s~A~~L~~~~g~~~V~vle~~~ 65 (407)
T TIGR01373 12 LRGHRGWKPAWRSPEP--------KPTYDVIIVGGGGHGLATAYYLAKEHGITNVAVLEKGW 65 (407)
T ss_pred hccCCCCCcccCCCCC--------CccCCEEEECCcHHHHHHHHHHHHhcCCCeEEEEEccc
Confidence 4555567665544333 4579999999999999999999983385 999999974
No 38
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=99.25 E-value=2.6e-10 Score=126.06 Aligned_cols=58 Identities=21% Similarity=0.300 Sum_probs=43.8
Q ss_pred chhhhcCCCeEEEcccEEEEEEEcCCCCeEEEEEEEeCCCCceEEEEeccEEEEccCCCChHHHHH
Q psy1040 276 LRDKYKQDNLKVQLNAHVMKLNIDPKTKRALSVQFKDTNTNEIKTVKAKKEIILTAGAIGSPQLLM 341 (614)
Q Consensus 276 L~~~~~~~n~~I~~~~~V~~I~~d~~~~ra~GV~~~~~~~g~~~~v~A~k~VVlaaG~i~sp~LLl 341 (614)
|...+++.|++|++++.|++|..+ ++++++|++.++ + ++.|+ .||+|++...+...|+
T Consensus 225 l~~~~~~~G~~i~~~~~V~~i~~~--~~~~~~V~~~~g---~--~~~ad-~VI~a~~~~~~~~~l~ 282 (502)
T TIGR02734 225 MAKLAEDLGGELRLNAEVIRIETE--GGRATAVHLADG---E--RLDAD-AVVSNADLHHTYRRLL 282 (502)
T ss_pred HHHHHHHCCCEEEECCeEEEEEee--CCEEEEEEECCC---C--EEECC-EEEECCcHHHHHHHhc
Confidence 334445678999999999999987 578889987543 2 57897 6999988766665554
No 39
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.25 E-value=9e-11 Score=131.33 Aligned_cols=55 Identities=16% Similarity=0.230 Sum_probs=44.8
Q ss_pred hcCCCeEEEcccEEEEEEEcCCCCeEEEEEEEeCCCCceEEEEeccEEEEccCCCCh
Q psy1040 280 YKQDNLKVQLNAHVMKLNIDPKTKRALSVQFKDTNTNEIKTVKAKKEIILTAGAIGS 336 (614)
Q Consensus 280 ~~~~n~~I~~~~~V~~I~~d~~~~ra~GV~~~~~~~g~~~~v~A~k~VVlaaG~i~s 336 (614)
..+.|++|+.++.|++|+.++ +++|+||.+.+..+|+...++|+ .||||+|++..
T Consensus 158 ~~~~gi~i~~~~~~~~Li~~~-~g~v~Gv~~~~~~~g~~~~i~Ak-aVILATGG~~~ 212 (591)
T PRK07057 158 NVAAKTQFFVEWMALDLIRDA-DGDVLGVTALEMETGDVYILEAK-TTLFATGGAGR 212 (591)
T ss_pred HHhcCCEEEeCcEEEEEEEcC-CCeEEEEEEEEcCCCeEEEEECC-eEEECCCCccc
Confidence 345789999999999999864 47999999865433777788895 89999999864
No 40
>PRK07804 L-aspartate oxidase; Provisional
Probab=99.25 E-value=1.3e-10 Score=128.96 Aligned_cols=59 Identities=22% Similarity=0.362 Sum_probs=43.9
Q ss_pred chhhhcCCCeEEEcccEEEEEEEcCCCCeEEEEEEEeC---CCCceEEEEeccEEEEccCCCCh
Q psy1040 276 LRDKYKQDNLKVQLNAHVMKLNIDPKTKRALSVQFKDT---NTNEIKTVKAKKEIILTAGAIGS 336 (614)
Q Consensus 276 L~~~~~~~n~~I~~~~~V~~I~~d~~~~ra~GV~~~~~---~~g~~~~v~A~k~VVlaaG~i~s 336 (614)
|...+++.+++|++++.|++|+.++ +++|+||.+.+. .++....++|+ .||+|+|++..
T Consensus 150 L~~~~~~~gV~i~~~~~v~~Li~~~-~g~v~Gv~~~~~~~~~~~g~~~i~Ak-~VIlATGG~~~ 211 (541)
T PRK07804 150 LDAAVRADPLDIREHALALDLLTDG-TGAVAGVTLHVLGEGSPDGVGAVHAP-AVVLATGGLGQ 211 (541)
T ss_pred HHHHHHhCCCEEEECeEeeeeEEcC-CCeEEEEEEEeccCCCCCcEEEEEcC-eEEECCCCCCC
Confidence 3344455679999999999999873 479999988621 11334678995 89999999863
No 41
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=99.24 E-value=7.9e-11 Score=131.53 Aligned_cols=54 Identities=11% Similarity=0.239 Sum_probs=44.3
Q ss_pred hcCCCeEEEcccEEEEEEEcCCCCeEEEEEEEeCCCCceEEEEeccEEEEccCCCCh
Q psy1040 280 YKQDNLKVQLNAHVMKLNIDPKTKRALSVQFKDTNTNEIKTVKAKKEIILTAGAIGS 336 (614)
Q Consensus 280 ~~~~n~~I~~~~~V~~I~~d~~~~ra~GV~~~~~~~g~~~~v~A~k~VVlaaG~i~s 336 (614)
.+.+|+++++++.|++|+.+ +++|.||.+.+..+|+...++|+ .||||+|++..
T Consensus 144 ~~~~~i~i~~~~~v~~Li~~--~g~v~Gv~~~~~~~g~~~~i~Ak-aVIlATGG~~~ 197 (582)
T PRK09231 144 LKYPQIQRFDEHFVLDILVD--DGHVRGLVAMNMMEGTLVQIRAN-AVVMATGGAGR 197 (582)
T ss_pred hcCCCcEEEeCeEEEEEEEe--CCEEEEEEEEEcCCCcEEEEECC-EEEECCCCCcC
Confidence 34468999999999999987 68999998865333777889995 89999999864
No 42
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=99.24 E-value=6.2e-11 Score=132.50 Aligned_cols=62 Identities=15% Similarity=0.272 Sum_probs=50.1
Q ss_pred chhhhcCCCeEEEcccEEEEEEEcCCCCeEEEEEEEeCCCCceEEEEeccEEEEccCCCChHHHHH
Q psy1040 276 LRDKYKQDNLKVQLNAHVMKLNIDPKTKRALSVQFKDTNTNEIKTVKAKKEIILTAGAIGSPQLLM 341 (614)
Q Consensus 276 L~~~~~~~n~~I~~~~~V~~I~~d~~~~ra~GV~~~~~~~g~~~~v~A~k~VVlaaG~i~sp~LLl 341 (614)
|...+++.|++|++++.|++|+.+ +++|+||.+... |+.++++|+|.||||+|++....=|+
T Consensus 227 L~~~~~~~Gv~i~~~t~v~~Li~~--~g~V~GV~~~~~--g~~~~i~A~~~VVlAtGg~~~n~em~ 288 (578)
T PRK12843 227 LLYSLRARGVRILTQTDVESLETD--HGRVIGATVVQG--GVRRRIRARGGVVLATGGFNRHPQLR 288 (578)
T ss_pred HHHHHHhCCCEEEeCCEEEEEEee--CCEEEEEEEecC--CeEEEEEccceEEECCCCcccCHHHH
Confidence 334456679999999999999987 689999998765 77788998678999999998754333
No 43
>PRK12839 hypothetical protein; Provisional
Probab=99.23 E-value=5.4e-11 Score=132.34 Aligned_cols=60 Identities=15% Similarity=0.238 Sum_probs=46.5
Q ss_pred hhhhcCCCeEEEcccEEEEEEEcCCCCeEEEEEEEeCCCCceEEEEeccEEEEccCCCChHHH
Q psy1040 277 RDKYKQDNLKVQLNAHVMKLNIDPKTKRALSVQFKDTNTNEIKTVKAKKEIILTAGAIGSPQL 339 (614)
Q Consensus 277 ~~~~~~~n~~I~~~~~V~~I~~d~~~~ra~GV~~~~~~~g~~~~v~A~k~VVlaaG~i~sp~L 339 (614)
...+.+.|++|++++.|++|+.++ +++|+||.+... +...++.+.|.||||+|++..-.-
T Consensus 221 ~~~a~~~Gv~i~~~t~v~~Li~~~-~g~V~GV~~~~~--~g~~~i~aak~VVLAtGGf~~n~~ 280 (572)
T PRK12839 221 LRSADDLGVDLRVSTSATSLTTDK-NGRVTGVRVQGP--DGAVTVEATRGVVLATGGFPNDVD 280 (572)
T ss_pred HHHHHHCCCEEEcCCEEEEEEECC-CCcEEEEEEEeC--CCcEEEEeCCEEEEcCCCcccCHH
Confidence 334456789999999999999864 589999998765 334566776789999999987443
No 44
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=99.23 E-value=7.6e-11 Score=133.02 Aligned_cols=57 Identities=19% Similarity=0.241 Sum_probs=47.0
Q ss_pred hhhhcCCCeEEEcccEEEEEEEcCCCCeEEEEEEEeCCCCceEEEEeccEEEEccCCCCh
Q psy1040 277 RDKYKQDNLKVQLNAHVMKLNIDPKTKRALSVQFKDTNTNEIKTVKAKKEIILTAGAIGS 336 (614)
Q Consensus 277 ~~~~~~~n~~I~~~~~V~~I~~d~~~~ra~GV~~~~~~~g~~~~v~A~k~VVlaaG~i~s 336 (614)
...+.+.|++|+.++.|++|+.+ +++|+||.+.+..+|+.+.+.|+ .||||+|++..
T Consensus 165 ~~~~~~~gv~i~~~~~~~~Li~~--~g~v~Gv~~~~~~~G~~~~i~Ak-aVVLATGG~g~ 221 (657)
T PRK08626 165 DNEAIKLGVPVHDRKEAIALIHD--GKRCYGAVVRCLITGELRAYVAK-ATLIATGGYGR 221 (657)
T ss_pred HHHHHhCCCEEEeeEEEEEEEEE--CCEEEEEEEEEcCCCcEEEEEcC-eEEECCCcccC
Confidence 34445679999999999999987 68999999986333888889995 89999999864
No 45
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.23 E-value=8.4e-11 Score=132.31 Aligned_cols=49 Identities=20% Similarity=0.228 Sum_probs=41.6
Q ss_pred eEEEcccEEEEEEEcCCCCeEEEEEEEeCCCCceEEEEeccEEEEccCCCCh
Q psy1040 285 LKVQLNAHVMKLNIDPKTKRALSVQFKDTNTNEIKTVKAKKEIILTAGAIGS 336 (614)
Q Consensus 285 ~~I~~~~~V~~I~~d~~~~ra~GV~~~~~~~g~~~~v~A~k~VVlaaG~i~s 336 (614)
++|+.++.|++|+.+ ++++.||.+.+..+|+...|+|+ .||||+|+++.
T Consensus 166 v~i~~~~~v~~L~~~--~g~v~Gv~~~~~~~g~~~~i~Ak-~VVlATGG~~~ 214 (626)
T PRK07803 166 IKVFAECTITELLKD--GGRIAGAFGYWRESGRFVLFEAP-AVVLATGGIGK 214 (626)
T ss_pred eEEEeCCEEEEEEEE--CCEEEEEEEEECCCCeEEEEEcC-eEEECCCcccC
Confidence 999999999999987 68999998765333777789995 79999999764
No 46
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=99.22 E-value=1.5e-10 Score=129.80 Aligned_cols=52 Identities=21% Similarity=0.204 Sum_probs=42.0
Q ss_pred cCCCeEEEcccEEEEEEEcCCCCeEEEEEEEeCCCCceEEEEeccEEEEccCCCC
Q psy1040 281 KQDNLKVQLNAHVMKLNIDPKTKRALSVQFKDTNTNEIKTVKAKKEIILTAGAIG 335 (614)
Q Consensus 281 ~~~n~~I~~~~~V~~I~~d~~~~ra~GV~~~~~~~g~~~~v~A~k~VVlaaG~i~ 335 (614)
++.|++|+.++.|++|+.+ +++|+||.+.+..+++...++|+ .||||+|++.
T Consensus 144 ~~ggV~i~~~~~v~~Li~~--~g~v~Gv~~~~~~~g~~~~i~Ak-aVILATGG~~ 195 (608)
T PRK06854 144 KALGDNVLNRVFITDLLVD--DNRIAGAVGFSVRENKFYVFKAK-AVIVATGGAA 195 (608)
T ss_pred hcCCCEEEeCCEEEEEEEe--CCEEEEEEEEEccCCcEEEEECC-EEEECCCchh
Confidence 3456999999999999987 57999998754323666789995 8999999986
No 47
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=99.21 E-value=1.5e-10 Score=129.00 Aligned_cols=54 Identities=17% Similarity=0.212 Sum_probs=44.8
Q ss_pred hcCCCeEEEcccEEEEEEEcCCCCeEEEEEEEeCCCCceEEEEeccEEEEccCCCCh
Q psy1040 280 YKQDNLKVQLNAHVMKLNIDPKTKRALSVQFKDTNTNEIKTVKAKKEIILTAGAIGS 336 (614)
Q Consensus 280 ~~~~n~~I~~~~~V~~I~~d~~~~ra~GV~~~~~~~g~~~~v~A~k~VVlaaG~i~s 336 (614)
.+.+|++++.++.|++|+.+ +++|+||.+.+..+|+...++|+ .||||+|++..
T Consensus 143 ~~~~~i~i~~~~~v~~Li~~--~g~v~Gv~~~~~~~g~~~~i~Ak-aVILATGG~~~ 196 (580)
T TIGR01176 143 LTYPQIMRYDEWFVTDLLVD--DGRVCGLVAIEMAEGRLVTILAD-AVVLATGGAGR 196 (580)
T ss_pred HhcCCCEEEeCeEEEEEEee--CCEEEEEEEEEcCCCcEEEEecC-EEEEcCCCCcc
Confidence 34468999999999999987 68999999866333777889995 89999999864
No 48
>PRK08275 putative oxidoreductase; Provisional
Probab=99.21 E-value=1.8e-10 Score=128.34 Aligned_cols=59 Identities=25% Similarity=0.306 Sum_probs=46.2
Q ss_pred cchhhhcCCCeEEEcccEEEEEEEcCCCCeEEEEEEEeCCCCceEEEEeccEEEEccCCCC
Q psy1040 275 FLRDKYKQDNLKVQLNAHVMKLNIDPKTKRALSVQFKDTNTNEIKTVKAKKEIILTAGAIG 335 (614)
Q Consensus 275 ~L~~~~~~~n~~I~~~~~V~~I~~d~~~~ra~GV~~~~~~~g~~~~v~A~k~VVlaaG~i~ 335 (614)
.|...+++.|++|++++.|++|+.++ ++++.||.+.+..+|+...++|+ .||||+|++.
T Consensus 142 ~L~~~~~~~gv~i~~~~~v~~Li~~~-~g~v~Gv~~~~~~~g~~~~i~Ak-~VIlATGG~~ 200 (554)
T PRK08275 142 VLYRQLKRARVLITNRIMATRLLTDA-DGRVAGALGFDCRTGEFLVIRAK-AVILCCGAAG 200 (554)
T ss_pred HHHHHHHHCCCEEEcceEEEEEEEcC-CCeEEEEEEEecCCCcEEEEECC-EEEECCCCcc
Confidence 34444456799999999999999864 47899998765333777788995 7999999975
No 49
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=99.21 E-value=1.7e-10 Score=129.12 Aligned_cols=57 Identities=23% Similarity=0.251 Sum_probs=45.5
Q ss_pred hhhhcCCCeEEEcccEEEEEEEcCCCCeEEEEEEEeCCCCceEEEEeccEEEEccCCCCh
Q psy1040 277 RDKYKQDNLKVQLNAHVMKLNIDPKTKRALSVQFKDTNTNEIKTVKAKKEIILTAGAIGS 336 (614)
Q Consensus 277 ~~~~~~~n~~I~~~~~V~~I~~d~~~~ra~GV~~~~~~~g~~~~v~A~k~VVlaaG~i~s 336 (614)
...+.+.|++|++++.|++|+.+ +++|+||.+.+..+|+...++|+ .||||+|++..
T Consensus 136 ~~~~~~~gv~i~~~~~v~~L~~~--~g~v~Gv~~~~~~~g~~~~i~Ak-~VVlAtGG~~~ 192 (566)
T TIGR01812 136 YEQCLKLGVSFFNEYFALDLIHD--DGRVRGVVAYDLKTGEIVFFRAK-AVVLATGGYGR 192 (566)
T ss_pred HHHHHHcCCEEEeccEEEEEEEe--CCEEEEEEEEECCCCcEEEEECC-eEEECCCcccC
Confidence 33344559999999999999987 68999999875333777789995 89999999864
No 50
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.21 E-value=1.4e-10 Score=129.78 Aligned_cols=54 Identities=24% Similarity=0.275 Sum_probs=44.1
Q ss_pred hcCCCeEEEcccEEEEEEEcCCCCeEEEEEEEeCCCCceEEEEeccEEEEccCCCCh
Q psy1040 280 YKQDNLKVQLNAHVMKLNIDPKTKRALSVQFKDTNTNEIKTVKAKKEIILTAGAIGS 336 (614)
Q Consensus 280 ~~~~n~~I~~~~~V~~I~~d~~~~ra~GV~~~~~~~g~~~~v~A~k~VVlaaG~i~s 336 (614)
.+..|++|+.++.|++|+.+ +++++||.+.+..+|+...++|+ .||||+|++..
T Consensus 148 ~~~~gv~i~~~~~v~~Li~~--~g~v~Gv~~~~~~~g~~~~i~Ak-~VIlATGG~~~ 201 (577)
T PRK06069 148 LRFDNIHFYDEHFVTSLIVE--NGVFKGVTAIDLKRGEFKVFQAK-AGIIATGGAGR 201 (577)
T ss_pred HhcCCCEEEECCEEEEEEEE--CCEEEEEEEEEcCCCeEEEEECC-cEEEcCchhcc
Confidence 34478999999999999987 68999998866433766789995 79999999853
No 51
>PRK09077 L-aspartate oxidase; Provisional
Probab=99.20 E-value=2.9e-10 Score=126.01 Aligned_cols=57 Identities=18% Similarity=0.312 Sum_probs=45.9
Q ss_pred hhcCCCeEEEcccEEEEEEEcC----CCCeEEEEEEEeCCCCceEEEEeccEEEEccCCCCh
Q psy1040 279 KYKQDNLKVQLNAHVMKLNIDP----KTKRALSVQFKDTNTNEIKTVKAKKEIILTAGAIGS 336 (614)
Q Consensus 279 ~~~~~n~~I~~~~~V~~I~~d~----~~~ra~GV~~~~~~~g~~~~v~A~k~VVlaaG~i~s 336 (614)
+.+++|++|++++.|++|+.++ ++++|+||.+.+..+|+...|+|+ .||||+|++..
T Consensus 148 ~~~~~~I~v~~~~~v~~Li~~~~~~~~~g~v~Gv~~~~~~~g~~~~i~Ak-~VVlATGG~~~ 208 (536)
T PRK09077 148 ARNHPNITVLERHNAIDLITSDKLGLPGRRVVGAYVLNRNKERVETIRAK-FVVLATGGASK 208 (536)
T ss_pred HHhCCCcEEEeeEEeeeeeecccccCCCCEEEEEEEEECCCCcEEEEecC-eEEECCCCCCC
Confidence 3456799999999999999863 137999999876433777889995 89999999864
No 52
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=99.19 E-value=2.5e-10 Score=125.36 Aligned_cols=50 Identities=22% Similarity=0.429 Sum_probs=42.5
Q ss_pred CCCeEEEcccEEEEEEEcCCCCeEEEEEEEeCCCCceEEEEeccEEEEccCCCCh
Q psy1040 282 QDNLKVQLNAHVMKLNIDPKTKRALSVQFKDTNTNEIKTVKAKKEIILTAGAIGS 336 (614)
Q Consensus 282 ~~n~~I~~~~~V~~I~~d~~~~ra~GV~~~~~~~g~~~~v~A~k~VVlaaG~i~s 336 (614)
.+|++|++++.|++|+.+ +++++||.+.+. ++...++|+ .||||+|++..
T Consensus 141 ~~gi~i~~~~~v~~l~~~--~g~v~Gv~~~~~--~~~~~i~A~-~VVlAtGG~~~ 190 (488)
T TIGR00551 141 HPNIRIIEGENALDLLIE--TGRVVGVWVWNR--ETVETCHAD-AVVLATGGAGK 190 (488)
T ss_pred cCCcEEEECeEeeeeecc--CCEEEEEEEEEC--CcEEEEEcC-EEEECCCcccC
Confidence 479999999999999987 679999998775 555678995 89999999864
No 53
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=99.19 E-value=2.7e-10 Score=123.96 Aligned_cols=52 Identities=15% Similarity=0.324 Sum_probs=41.0
Q ss_pred eEEEcccEEEEEEEcCCCCeEEEEEEEeCCCCceEEEEeccEEEEccCCCChHHHHHHhCCC
Q psy1040 285 LKVQLNAHVMKLNIDPKTKRALSVQFKDTNTNEIKTVKAKKEIILTAGAIGSPQLLMLSGVG 346 (614)
Q Consensus 285 ~~I~~~~~V~~I~~d~~~~ra~GV~~~~~~~g~~~~v~A~k~VVlaaG~i~sp~LLl~SGig 346 (614)
++|+++++|+.|..+ ++....|.+.+ | +++|+ .||+|||++ |.+|+..+|++
T Consensus 232 v~i~~~t~V~~I~~~--~~~~~~V~T~~---G---~i~A~-~VVvaAG~~-S~~La~~~Gi~ 283 (497)
T PTZ00383 232 ISINLNTEVLNIERS--NDSLYKIHTNR---G---EIRAR-FVVVSACGY-SLLFAQKMGYG 283 (497)
T ss_pred EEEEeCCEEEEEEec--CCCeEEEEECC---C---EEEeC-EEEECcChh-HHHHHHHhCCC
Confidence 899999999999876 45555665432 3 68997 699999987 88888888874
No 54
>PRK08071 L-aspartate oxidase; Provisional
Probab=99.18 E-value=2.3e-10 Score=126.06 Aligned_cols=50 Identities=26% Similarity=0.416 Sum_probs=42.9
Q ss_pred CCeEEEcccEEEEEEEcCCCCeEEEEEEEeCCCCceEEEEeccEEEEccCCCCh
Q psy1040 283 DNLKVQLNAHVMKLNIDPKTKRALSVQFKDTNTNEIKTVKAKKEIILTAGAIGS 336 (614)
Q Consensus 283 ~n~~I~~~~~V~~I~~d~~~~ra~GV~~~~~~~g~~~~v~A~k~VVlaaG~i~s 336 (614)
.|++|++++.|++|+.+ ++++.||.+.+.+ |+...++|+ .||||+|++..
T Consensus 142 ~gV~i~~~~~v~~Li~~--~g~v~Gv~~~~~~-g~~~~i~Ak-~VVlATGG~~~ 191 (510)
T PRK08071 142 PHVTVVEQEMVIDLIIE--NGRCIGVLTKDSE-GKLKRYYAD-YVVLASGGCGG 191 (510)
T ss_pred cCCEEEECeEhhheeec--CCEEEEEEEEECC-CcEEEEEcC-eEEEecCCCcc
Confidence 58999999999999887 6899999987642 777789995 89999999875
No 55
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=99.18 E-value=3.4e-10 Score=121.31 Aligned_cols=77 Identities=17% Similarity=0.269 Sum_probs=59.9
Q ss_pred hcCCCeEEEcccEEEEEEEcCCCCeEEEEEEEeCCCCceEEEEeccEEEEccCCCChHHHHHHhCCCCc---hhhhhcCC
Q psy1040 280 YKQDNLKVQLNAHVMKLNIDPKTKRALSVQFKDTNTNEIKTVKAKKEIILTAGAIGSPQLLMLSGVGPK---SHLDELGI 356 (614)
Q Consensus 280 ~~~~n~~I~~~~~V~~I~~d~~~~ra~GV~~~~~~~g~~~~v~A~k~VVlaaG~i~sp~LLl~SGig~~---~~l~~~gi 356 (614)
+...|.+|++.++|++++.+ ++ +.||++.+..+|+++.|+|+ .||.|||.| +-+++...+..+. ......|+
T Consensus 174 A~~~Ga~il~~~~v~~~~re--~~-v~gV~~~D~~tg~~~~ira~-~VVNAaGpW-~d~i~~~~~~~~~~~~~vr~skGs 248 (532)
T COG0578 174 AAEHGAEILTYTRVESLRRE--GG-VWGVEVEDRETGETYEIRAR-AVVNAAGPW-VDEILEMAGLEQSPHIGVRPSKGS 248 (532)
T ss_pred HHhcccchhhcceeeeeeec--CC-EEEEEEEecCCCcEEEEEcC-EEEECCCcc-HHHHHHhhcccCCCCccceeccce
Confidence 35678999999999999998 56 99999998777999999996 799999987 6677777765443 22334566
Q ss_pred Ccccc
Q psy1040 357 ETISD 361 (614)
Q Consensus 357 ~~~~d 361 (614)
.++++
T Consensus 249 HlVv~ 253 (532)
T COG0578 249 HLVVD 253 (532)
T ss_pred EEEec
Confidence 66654
No 56
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=99.17 E-value=2.9e-10 Score=122.33 Aligned_cols=34 Identities=21% Similarity=0.404 Sum_probs=32.4
Q ss_pred ccEEEECCCCchHHHHHHHhcCCCCeEEEecCCCC
Q psy1040 76 YDFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGPD 110 (614)
Q Consensus 76 yDvIVVGsG~aG~~~A~~Lae~~G~~VLlLEaG~~ 110 (614)
+||||||||..|+++|++|+++ |.+|+||||+..
T Consensus 2 ~~vvIIGaG~~G~~~A~~La~~-g~~V~vle~~~~ 35 (410)
T PRK12409 2 SHIAVIGAGITGVTTAYALAQR-GYQVTVFDRHRY 35 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHC-CCeEEEEeCCCC
Confidence 6999999999999999999999 999999999964
No 57
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=99.16 E-value=4.3e-10 Score=119.71 Aligned_cols=34 Identities=38% Similarity=0.498 Sum_probs=32.1
Q ss_pred ccEEEECCCCchHHHHHHHhcCCCCeEEEecCCCC
Q psy1040 76 YDFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGPD 110 (614)
Q Consensus 76 yDvIVVGsG~aG~~~A~~Lae~~G~~VLlLEaG~~ 110 (614)
|||||||||.+|+++|++|+++ |++|+|||++..
T Consensus 1 ~dvvIIGaGi~G~s~A~~La~~-g~~V~l~e~~~~ 34 (380)
T TIGR01377 1 FDVIVVGAGIMGCFAAYHLAKH-GKKTLLLEQFDL 34 (380)
T ss_pred CcEEEECCCHHHHHHHHHHHHC-CCeEEEEeccCC
Confidence 7999999999999999999999 999999999754
No 58
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.16 E-value=4e-10 Score=126.12 Aligned_cols=60 Identities=20% Similarity=0.241 Sum_probs=46.5
Q ss_pred chhhhcCCCeEEEcccEEEEEEEcCC--CCeEEEEEEEeCCCCceEEEEeccEEEEccCCCCh
Q psy1040 276 LRDKYKQDNLKVQLNAHVMKLNIDPK--TKRALSVQFKDTNTNEIKTVKAKKEIILTAGAIGS 336 (614)
Q Consensus 276 L~~~~~~~n~~I~~~~~V~~I~~d~~--~~ra~GV~~~~~~~g~~~~v~A~k~VVlaaG~i~s 336 (614)
|...+.+.|++|++++.|++|+.+++ +++|+||.+.+..+|+.+.|+|+ .||||+|++..
T Consensus 146 L~~~~~~~gv~i~~~~~v~~Li~~~~~~~g~v~Gv~~~~~~~g~~~~i~Ak-aVVLATGG~~~ 207 (583)
T PRK08205 146 LYQNCVKHGVEFFNEFYVLDLLLTETPSGPVAAGVVAYELATGEIHVFHAK-AVVFATGGSGR 207 (583)
T ss_pred HHHHHHhcCCEEEeCCEEEEEEecCCccCCcEEEEEEEEcCCCeEEEEEeC-eEEECCCCCcc
Confidence 44444567999999999999998731 17999998865333777789995 89999999864
No 59
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=99.13 E-value=8.2e-10 Score=124.17 Aligned_cols=64 Identities=22% Similarity=0.198 Sum_probs=50.0
Q ss_pred hhcCCCeEEEcccEEEEEEEcCCCCeEEEEEEEeCCCCceEEEEeccEEEEccCCCChHHHHHHhC
Q psy1040 279 KYKQDNLKVQLNAHVMKLNIDPKTKRALSVQFKDTNTNEIKTVKAKKEIILTAGAIGSPQLLMLSG 344 (614)
Q Consensus 279 ~~~~~n~~I~~~~~V~~I~~d~~~~ra~GV~~~~~~~g~~~~v~A~k~VVlaaG~i~sp~LLl~SG 344 (614)
.+.+.|++|+.++.|++|..++++++++||++.+..+++.++|+|+ .||+|||++ +.+|+...|
T Consensus 241 ~A~~~Ga~i~~~~~V~~l~~~~~~g~v~gV~v~d~~tg~~~~i~a~-~VVnAaGaw-s~~l~~~~g 304 (627)
T PLN02464 241 TAALAGAAVLNYAEVVSLIKDESTGRIVGARVRDNLTGKEFDVYAK-VVVNAAGPF-CDEVRKMAD 304 (627)
T ss_pred HHHhCCcEEEeccEEEEEEEecCCCcEEEEEEEECCCCcEEEEEeC-EEEECCCHh-HHHHHHhcc
Confidence 3456789999999999998863236899999876544677789996 799999987 677776654
No 60
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=99.12 E-value=6.1e-10 Score=124.73 Aligned_cols=53 Identities=21% Similarity=0.266 Sum_probs=44.0
Q ss_pred CCCeEEEcccEEEEEEEcCCCCeEEEEEEEeCCCCceEEEEeccEEEEccCCCCh
Q psy1040 282 QDNLKVQLNAHVMKLNIDPKTKRALSVQFKDTNTNEIKTVKAKKEIILTAGAIGS 336 (614)
Q Consensus 282 ~~n~~I~~~~~V~~I~~d~~~~ra~GV~~~~~~~g~~~~v~A~k~VVlaaG~i~s 336 (614)
+.|++|++++.|++|+.++ +++|+||.+.+..+|+...++|+ .||||+|+++.
T Consensus 145 ~~gV~i~~~t~v~~Li~dd-~grV~GV~~~~~~~g~~~~i~Ak-aVVLATGG~g~ 197 (603)
T TIGR01811 145 AGLVEKYEGWEMLDIIVVD-GNRARGIIARNLVTGEIETHSAD-AVILATGGYGN 197 (603)
T ss_pred cCCcEEEeCcEEEEEEEcC-CCEEEEEEEEECCCCcEEEEEcC-EEEECCCCCcC
Confidence 4589999999999999863 47999999876433777789995 89999999864
No 61
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.12 E-value=8.6e-10 Score=129.26 Aligned_cols=51 Identities=25% Similarity=0.392 Sum_probs=43.1
Q ss_pred CCeEEEcccEEEEEEEcCCCCeEEEEEEEeCCCCceEEEEeccEEEEccCCCCh
Q psy1040 283 DNLKVQLNAHVMKLNIDPKTKRALSVQFKDTNTNEIKTVKAKKEIILTAGAIGS 336 (614)
Q Consensus 283 ~n~~I~~~~~V~~I~~d~~~~ra~GV~~~~~~~g~~~~v~A~k~VVlaaG~i~s 336 (614)
.++.+.+++.+++|+.+ +++|+||.+.+..+|+.+.|+| |.||||+|+++.
T Consensus 156 ~~i~~~~~~~~~~Li~~--~g~v~Gv~~~~~~~g~~~~i~A-kaVILATGG~g~ 206 (897)
T PRK13800 156 ERIRIENRLMPVRVLTE--GGRAVGAAALNTRTGEFVTVGA-KAVILATGPCGR 206 (897)
T ss_pred CCcEEEeceeeEEEEee--CCEEEEEEEEecCCCcEEEEEC-CEEEECCCcccc
Confidence 47999999999999987 6899999987644488889999 589999999863
No 62
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=99.11 E-value=1.1e-09 Score=122.19 Aligned_cols=54 Identities=26% Similarity=0.278 Sum_probs=43.5
Q ss_pred cCCCeEEEcccEEEEEEEcCCC-CeEEEEEEEeCCCCceEEEEeccEEEEccCCCC
Q psy1040 281 KQDNLKVQLNAHVMKLNIDPKT-KRALSVQFKDTNTNEIKTVKAKKEIILTAGAIG 335 (614)
Q Consensus 281 ~~~n~~I~~~~~V~~I~~d~~~-~ra~GV~~~~~~~g~~~~v~A~k~VVlaaG~i~ 335 (614)
.+.+++|+.++.|++|+.++++ ++|+||.+.+..+|+.+.|.|+ .||||+|++.
T Consensus 137 ~~~~~~i~~~~~v~~Ll~d~~~~GrV~Gv~~~~~~~g~~~~i~Ak-aVVLATGG~~ 191 (614)
T TIGR02061 137 KNALGDIFERIFIVKLLLDKNTPNRIAGAVGFNVRANEVHVFKAK-TVIVAAGGAV 191 (614)
T ss_pred HhCCCeEEcccEEEEEEecCCCCCeEEEEEEEEeCCCcEEEEECC-EEEECCCccc
Confidence 3455799999999999987422 7999999865434778889995 8999999985
No 63
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=99.11 E-value=4.3e-10 Score=122.62 Aligned_cols=64 Identities=22% Similarity=0.273 Sum_probs=44.1
Q ss_pred hhcCCCeEEEcccEEEEEEEcCCCCeEEEEEEEeCCCCceEEEEeccEEEEccCCCChHHHHHHhCCC
Q psy1040 279 KYKQDNLKVQLNAHVMKLNIDPKTKRALSVQFKDTNTNEIKTVKAKKEIILTAGAIGSPQLLMLSGVG 346 (614)
Q Consensus 279 ~~~~~n~~I~~~~~V~~I~~d~~~~ra~GV~~~~~~~g~~~~v~A~k~VVlaaG~i~sp~LLl~SGig 346 (614)
.+.+.|++|+++++|++|..++ ++.+ .|.+.+.++|+..+++|+ .||+|||++ +.+|+...|+.
T Consensus 187 ~a~~~Gv~i~~~t~V~~i~~~~-~~~v-~v~~~~~~~g~~~~i~A~-~VV~AAG~~-s~~La~~~Gi~ 250 (483)
T TIGR01320 187 YLVQNGTTIRFGHEVRNLKRQS-DGSW-TVTVKNTRTGGKRTLNTR-FVFVGAGGG-ALPLLQKSGIP 250 (483)
T ss_pred HHHhCCCEEEeCCEEEEEEEcC-CCeE-EEEEeeccCCceEEEECC-EEEECCCcc-hHHHHHHcCCC
Confidence 3445689999999999998753 2333 244333222545578996 699999986 67777777764
No 64
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=99.10 E-value=1e-09 Score=117.47 Aligned_cols=36 Identities=39% Similarity=0.721 Sum_probs=32.8
Q ss_pred cccEEEECCCCchHHHHHHHhcC-CCCeEEEecCCCC
Q psy1040 75 EYDFVVVGGGVAGPVVAGRLVEN-PNWKVLLLEAGPD 110 (614)
Q Consensus 75 ~yDvIVVGsG~aG~~~A~~Lae~-~G~~VLlLEaG~~ 110 (614)
.|||||||||++|+++|++|++. +|++|+||||+..
T Consensus 2 ~~dVvIIGgGi~G~s~A~~La~~~~g~~V~llE~~~~ 38 (393)
T PRK11728 2 MYDFVIIGGGIVGLSTAMQLQERYPGARIAVLEKESG 38 (393)
T ss_pred CccEEEECCcHHHHHHHHHHHHhCCCCeEEEEeCCCc
Confidence 38999999999999999999985 6899999999854
No 65
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=99.10 E-value=2.9e-11 Score=128.23 Aligned_cols=57 Identities=19% Similarity=0.336 Sum_probs=36.6
Q ss_pred cchhhhcCCCeEEEcccEEEEEEEcCCCCeEEEEEEEeCCCCceEEEEeccEEEEccCCCChHHH
Q psy1040 275 FLRDKYKQDNLKVQLNAHVMKLNIDPKTKRALSVQFKDTNTNEIKTVKAKKEIILTAGAIGSPQL 339 (614)
Q Consensus 275 ~L~~~~~~~n~~I~~~~~V~~I~~d~~~~ra~GV~~~~~~~g~~~~v~A~k~VVlaaG~i~sp~L 339 (614)
.|...+++.|++|+++++|++|..+ ++.+..|++.+. ..+.|+ .||||+|+..-|++
T Consensus 114 ~L~~~l~~~gv~i~~~~~V~~i~~~--~~~~f~v~~~~~-----~~~~a~-~vILAtGG~S~p~~ 170 (409)
T PF03486_consen 114 ALLEELKRLGVEIHFNTRVKSIEKK--EDGVFGVKTKNG-----GEYEAD-AVILATGGKSYPKT 170 (409)
T ss_dssp HHHHHHHHHT-EEE-S--EEEEEEE--TTEEEEEEETTT-----EEEEES-EEEE----SSSGGG
T ss_pred HHHHHHHHcCCEEEeCCEeeeeeec--CCceeEeeccCc-----ccccCC-EEEEecCCCCcccc
Confidence 3444456779999999999999988 567788887222 378997 69999999887763
No 66
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=99.09 E-value=8.1e-09 Score=113.84 Aligned_cols=61 Identities=21% Similarity=0.190 Sum_probs=44.3
Q ss_pred chhhhcCCCeEEEcccEEEEEEEcCCCCeEEEEEEEeCCCCceEEEEeccEEEEccCCCChHHH
Q psy1040 276 LRDKYKQDNLKVQLNAHVMKLNIDPKTKRALSVQFKDTNTNEIKTVKAKKEIILTAGAIGSPQL 339 (614)
Q Consensus 276 L~~~~~~~n~~I~~~~~V~~I~~d~~~~ra~GV~~~~~~~g~~~~v~A~k~VVlaaG~i~sp~L 339 (614)
|...+++.|.+|++++.|++|+.+ +++++||.+.++.+|+..++.|+ .||+++....+.+|
T Consensus 238 L~~~~~~~G~~i~~~~~V~~I~~~--~~~~~gv~~~~~~~~~~~~~~ad-~VI~~~~~~~~~~l 298 (492)
T TIGR02733 238 LVEALKRDGGNLLTGQRVTAIHTK--GGRAGWVVVVDSRKQEDLNVKAD-DVVANLPPQSLLEL 298 (492)
T ss_pred HHHHHHhcCCEEeCCceEEEEEEe--CCeEEEEEEecCCCCceEEEECC-EEEECCCHHHHHHh
Confidence 334445678999999999999998 57888998765422333568897 69998886555543
No 67
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=99.09 E-value=9.5e-10 Score=118.63 Aligned_cols=33 Identities=30% Similarity=0.474 Sum_probs=31.2
Q ss_pred cEEEECCCCchHHHHHHHhcCCCCeEEEecCCCC
Q psy1040 77 DFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGPD 110 (614)
Q Consensus 77 DvIVVGsG~aG~~~A~~Lae~~G~~VLlLEaG~~ 110 (614)
||||||||.+|+++|++|+++ |++|+|||++..
T Consensus 2 ~v~IVG~Gi~Gls~A~~l~~~-g~~V~vle~~~~ 34 (416)
T PRK00711 2 RVVVLGSGVIGVTSAWYLAQA-GHEVTVIDRQPG 34 (416)
T ss_pred EEEEECCcHHHHHHHHHHHHC-CCEEEEEeCCCc
Confidence 799999999999999999998 999999999854
No 68
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=99.08 E-value=1.8e-10 Score=125.75 Aligned_cols=37 Identities=35% Similarity=0.520 Sum_probs=33.8
Q ss_pred CCcccEEEECCCCchHHHHHHHhcC-CCCeEEEecCCC
Q psy1040 73 QEEYDFVVVGGGVAGPVVAGRLVEN-PNWKVLLLEAGP 109 (614)
Q Consensus 73 ~~~yDvIVVGsG~aG~~~A~~Lae~-~G~~VLlLEaG~ 109 (614)
+.++||||||||.+|+++|++|+++ +|.+|+|||++.
T Consensus 22 ~~~~DVvIIGgGi~Gls~A~~La~~~~G~~V~vlE~~~ 59 (460)
T TIGR03329 22 DTQADVCIVGGGFTGLWTAIMIKQQRPALDVLVLEADL 59 (460)
T ss_pred CceeCEEEECCCHHHHHHHHHHHHhCCCCeEEEEeCCc
Confidence 5579999999999999999999996 689999999974
No 69
>PRK07512 L-aspartate oxidase; Provisional
Probab=99.08 E-value=1e-09 Score=121.06 Aligned_cols=51 Identities=20% Similarity=0.284 Sum_probs=42.7
Q ss_pred cCCCeEEEcccEEEEEEEcCCCCeEEEEEEEeCCCCceEEEEeccEEEEccCCCCh
Q psy1040 281 KQDNLKVQLNAHVMKLNIDPKTKRALSVQFKDTNTNEIKTVKAKKEIILTAGAIGS 336 (614)
Q Consensus 281 ~~~n~~I~~~~~V~~I~~d~~~~ra~GV~~~~~~~g~~~~v~A~k~VVlaaG~i~s 336 (614)
++.|++|+.++.|++|+.+ +++|+||.+.+. ++...++|+ .||||+|++..
T Consensus 148 ~~~gV~i~~~~~v~~Li~~--~g~v~Gv~~~~~--~~~~~i~Ak-~VVLATGG~~~ 198 (513)
T PRK07512 148 ATPSITVLEGAEARRLLVD--DGAVAGVLAATA--GGPVVLPAR-AVVLATGGIGG 198 (513)
T ss_pred hCCCCEEEECcChhheeec--CCEEEEEEEEeC--CeEEEEECC-EEEEcCCCCcC
Confidence 4468999999999999876 689999998765 556678995 79999999863
No 70
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=99.07 E-value=4.7e-10 Score=114.35 Aligned_cols=37 Identities=32% Similarity=0.647 Sum_probs=34.5
Q ss_pred cccEEEECCCCchHHHHHHHhcCCCCeEEEecCCCCCC
Q psy1040 75 EYDFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGPDEP 112 (614)
Q Consensus 75 ~yDvIVVGsG~aG~~~A~~Lae~~G~~VLlLEaG~~~~ 112 (614)
.+||||||+|+||+.+|..+++. |.+|+|||+++...
T Consensus 3 ~~dviIIGgGpAGlMaA~~aa~~-G~~V~lid~~~k~G 39 (408)
T COG2081 3 RFDVIIIGGGPAGLMAAISAAKA-GRRVLLIDKGPKLG 39 (408)
T ss_pred cceEEEECCCHHHHHHHHHHhhc-CCEEEEEecCcccc
Confidence 58999999999999999999998 99999999997743
No 71
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=99.07 E-value=5.4e-10 Score=122.78 Aligned_cols=54 Identities=26% Similarity=0.361 Sum_probs=45.3
Q ss_pred hcCCCeEEEcccEEEEEEEcCCCCeEEEEEEEeCCCCceEEEEeccEEEEccCCCC
Q psy1040 280 YKQDNLKVQLNAHVMKLNIDPKTKRALSVQFKDTNTNEIKTVKAKKEIILTAGAIG 335 (614)
Q Consensus 280 ~~~~n~~I~~~~~V~~I~~d~~~~ra~GV~~~~~~~g~~~~v~A~k~VVlaaG~i~ 335 (614)
.+..+++|..+..|++|+.++ ++++.||...+..+|+.+.++| |.||+|+|+.+
T Consensus 149 ~~~~~~~~~~~~~~~~l~~~~-~~~v~Gvv~~~~~~g~~~~~~a-kavilaTGG~g 202 (562)
T COG1053 149 LKFSGIEIFDEYFVLDLLVDD-GGGVAGVVARDLRTGELYVFRA-KAVILATGGAG 202 (562)
T ss_pred HHhhcchhhhhhhhhhheecC-CCcEEEEEEEEecCCcEEEEec-CcEEEccCCce
Confidence 344778999999999999884 3459999988766688889999 58999999988
No 72
>PLN02661 Putative thiazole synthesis
Probab=99.05 E-value=1.3e-09 Score=111.61 Aligned_cols=38 Identities=39% Similarity=0.538 Sum_probs=33.9
Q ss_pred CCcccEEEECCCCchHHHHHHHhcCCCCeEEEecCCCC
Q psy1040 73 QEEYDFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGPD 110 (614)
Q Consensus 73 ~~~yDvIVVGsG~aG~~~A~~Lae~~G~~VLlLEaG~~ 110 (614)
..++|++|||+|++|+++|+.|++++|++|+|||++..
T Consensus 90 ~~~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~~ 127 (357)
T PLN02661 90 YADTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVS 127 (357)
T ss_pred cccCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCcc
Confidence 34799999999999999999999866899999998743
No 73
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=99.05 E-value=6.5e-10 Score=117.73 Aligned_cols=34 Identities=26% Similarity=0.486 Sum_probs=32.0
Q ss_pred ccEEEECCCCchHHHHHHHhcCCCCeEEEecCCCC
Q psy1040 76 YDFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGPD 110 (614)
Q Consensus 76 yDvIVVGsG~aG~~~A~~Lae~~G~~VLlLEaG~~ 110 (614)
|||||||||++|+++|++|++. |++|+|||++..
T Consensus 1 ~dv~IIG~Gi~G~s~A~~L~~~-G~~V~vle~~~~ 34 (365)
T TIGR03364 1 YDLIIVGAGILGLAHAYAAARR-GLSVTVIERSSR 34 (365)
T ss_pred CCEEEECCCHHHHHHHHHHHHC-CCeEEEEeCCCC
Confidence 6999999999999999999998 999999999843
No 74
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=99.04 E-value=1.5e-09 Score=115.32 Aligned_cols=35 Identities=29% Similarity=0.378 Sum_probs=33.0
Q ss_pred cccEEEECCCCchHHHHHHHhcCCCCeEEEecCCCC
Q psy1040 75 EYDFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGPD 110 (614)
Q Consensus 75 ~yDvIVVGsG~aG~~~A~~Lae~~G~~VLlLEaG~~ 110 (614)
+|||||||||+.|+++|++|++. |++|+|||++..
T Consensus 3 ~~dv~IIGgGi~G~s~A~~L~~~-g~~V~lie~~~~ 37 (376)
T PRK11259 3 RYDVIVIGLGSMGSAAGYYLARR-GLRVLGLDRFMP 37 (376)
T ss_pred cccEEEECCCHHHHHHHHHHHHC-CCeEEEEecccC
Confidence 59999999999999999999999 999999999854
No 75
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=99.03 E-value=1.1e-09 Score=107.66 Aligned_cols=62 Identities=16% Similarity=0.193 Sum_probs=46.2
Q ss_pred hhcCCCeEEEcccEEEEEEEcCCCCeEEEEEEEe--CC---CC--------ceEEEEeccEEEEccCCCChHHHHHHh
Q psy1040 279 KYKQDNLKVQLNAHVMKLNIDPKTKRALSVQFKD--TN---TN--------EIKTVKAKKEIILTAGAIGSPQLLMLS 343 (614)
Q Consensus 279 ~~~~~n~~I~~~~~V~~I~~d~~~~ra~GV~~~~--~~---~g--------~~~~v~A~k~VVlaaG~i~sp~LLl~S 343 (614)
+.++..+++.+.++|.+|... +++++||.-.- .. .| ..+++.|. .||+++|+|+-.+-|.+-
T Consensus 162 ~~~~~~v~f~~RHrV~~l~~t--~grvtGv~GdVLeps~v~RG~~SSR~~~GdFef~A~-aviv~SGGIGGnhelVRr 236 (552)
T COG3573 162 AQRRGRVTFRFRHRVDGLTTT--GGRVTGVRGDVLEPSDVERGQPSSREVVGDFEFSAS-AVIVASGGIGGNHELVRR 236 (552)
T ss_pred HHhCCceEEEeeeeccceEee--CCeEeeecccccCCCccccCCCccceeecceEEeee-eEEEecCCcCCCHHHHHh
Confidence 345778999999999999998 79999996321 00 01 13678896 799999999877666654
No 76
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=99.02 E-value=1.5e-09 Score=108.08 Aligned_cols=36 Identities=36% Similarity=0.469 Sum_probs=33.7
Q ss_pred CcccEEEECCCCchHHHHHHHhcCCCCeEEEecCCCC
Q psy1040 74 EEYDFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGPD 110 (614)
Q Consensus 74 ~~yDvIVVGsG~aG~~~A~~Lae~~G~~VLlLEaG~~ 110 (614)
.+||++|||+|++|+++|++|+++ |++|+||||...
T Consensus 20 ~~~DVvIVGgGpAGL~aA~~la~~-G~~V~vlEk~~~ 55 (254)
T TIGR00292 20 AESDVIIVGAGPSGLTAAYYLAKN-GLKVCVLERSLA 55 (254)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHC-CCcEEEEecCCC
Confidence 469999999999999999999999 999999999854
No 77
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=99.02 E-value=4.3e-09 Score=110.79 Aligned_cols=206 Identities=19% Similarity=0.223 Sum_probs=112.2
Q ss_pred CcccEEEECCCCchHHHHHHHhcC-CCCeEEEecCCCCCCCccccccccccccCCcccccceecccccccccCCCeeeec
Q psy1040 74 EEYDFVVVGGGVAGPVVAGRLVEN-PNWKVLLLEAGPDEPTVTSVPGFAASAVGTHLDWKYKTERNKYACLSTGGICEWP 152 (614)
Q Consensus 74 ~~yDvIVVGsG~aG~~~A~~Lae~-~G~~VLlLEaG~~~~~~~~~p~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~ 152 (614)
.+|||||||||+.|+++|++|++. |+|+|+||||-......++-
T Consensus 2 ~~~DvvIIGgGI~G~a~a~~Ls~~~p~~~V~llEk~~~~a~~sS~----------------------------------- 46 (429)
T COG0579 2 MDYDVVIIGGGIMGAATAYELSEYEPDLSVALLEKEDGVAQESSS----------------------------------- 46 (429)
T ss_pred CceeEEEECCcHHHHHHHHHHHHhCCCceEEEEEccCcccccccc-----------------------------------
Confidence 369999999999999999999998 34999999998765332110
Q ss_pred CceeeccccccCCceeecCC--hhhHHHHHHcCCCCCChhhHHHHHHhhhcCCCCCCCCCCccCCCCCeeeeeCCCCCch
Q psy1040 153 RGKMLAGTGAMTGMMYTRSH--PSIYDEWQRQGNPGWGFSDVLRYFIKSEHNLNRDQVDPEYHGYDGPLKVQRFSSYPPI 230 (614)
Q Consensus 153 ~g~~lGGsS~~n~~~~~r~~--~~d~~~w~~~g~~~w~~~~l~~y~~~~e~~~~~~~~~~~~~~~~g~l~v~~~~~~~~~ 230 (614)
.=|..+..+++..+. ..++.. .|+..| |+-..++.. -+-..|.+.+.........
T Consensus 47 -----~NSgviHag~~y~p~slka~l~~---~g~~~~--------~~~~kq~~~-------~f~~~g~l~vA~~e~e~~~ 103 (429)
T COG0579 47 -----NNSGVIHAGLYYTPGSLKAKLCV---AGNINE--------FAICKQLGI-------PFINCGKLSVATGEEEVER 103 (429)
T ss_pred -----CcccceeccccCCCcchhhHHHH---HHHHHH--------HHHHHHhCC-------cccccCeEEEEEChHHHHH
Confidence 000111112211111 112211 111111 211121111 1222367777766655566
Q ss_pred hHHHHHHHHHcCCC-cCCCCCC-----------CcceeEEeec-cccCCcccccccccchhhhcCCCeEEEcccEEEEEE
Q psy1040 231 GEDIIKAGKELGYA-SGDFNGA-----------NQIGVNFAQV-MVDNGVRSSTPRMFLRDKYKQDNLKVQLNAHVMKLN 297 (614)
Q Consensus 231 ~~~~~~a~~~~G~~-~~d~~~~-----------~~~g~~~~~~-~~~~g~r~s~~~~~L~~~~~~~n~~I~~~~~V~~I~ 297 (614)
.+.+.+.+++.|+. ...++.. ...+...... ++.+... ...+++. .+...|++|++|++|++|.
T Consensus 104 L~~l~~~~~~ngv~~~~~ld~~~i~~~eP~l~~~~~aal~~p~~giV~~~~--~t~~l~e-~a~~~g~~i~ln~eV~~i~ 180 (429)
T COG0579 104 LEKLYERGKANGVFDLEILDKEEIKELEPLLNEGAVAALLVPSGGIVDPGE--LTRALAE-EAQANGVELRLNTEVTGIE 180 (429)
T ss_pred HHHHHHHHhhCCCcceeecCHHHHHhhCccccccceeeEEcCCCceEcHHH--HHHHHHH-HHHHcCCEEEecCeeeEEE
Confidence 66677777777877 2211110 1111111111 1111111 1112333 3345599999999999999
Q ss_pred EcCCCCeEEEEEEEeCCCCceEEEEeccEEEEccCCCChHHHHHHhCCCCc
Q psy1040 298 IDPKTKRALSVQFKDTNTNEIKTVKAKKEIILTAGAIGSPQLLMLSGVGPK 348 (614)
Q Consensus 298 ~d~~~~ra~GV~~~~~~~g~~~~v~A~k~VVlaaG~i~sp~LLl~SGig~~ 348 (614)
...+ | ++-+...+ |++. ++|+ -||.|||. .+.+|+.++|+.+.
T Consensus 181 ~~~d-g-~~~~~~~~---g~~~-~~ak-~Vin~AGl-~Ad~la~~~g~~~~ 223 (429)
T COG0579 181 KQSD-G-VFVLNTSN---GEET-LEAK-FVINAAGL-YADPLAQMAGIPED 223 (429)
T ss_pred EeCC-c-eEEEEecC---CcEE-EEee-EEEECCch-hHHHHHHHhCCCcc
Confidence 9743 3 33333322 5554 9995 69999985 58889999998653
No 78
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=99.01 E-value=6.7e-08 Score=106.55 Aligned_cols=58 Identities=22% Similarity=0.316 Sum_probs=45.4
Q ss_pred chhhhcCCCeEEEcccEEEEEEEcCCCCeEEEEEEEeCCCCceEEEEeccEEEEccCCCChHHHHH
Q psy1040 276 LRDKYKQDNLKVQLNAHVMKLNIDPKTKRALSVQFKDTNTNEIKTVKAKKEIILTAGAIGSPQLLM 341 (614)
Q Consensus 276 L~~~~~~~n~~I~~~~~V~~I~~d~~~~ra~GV~~~~~~~g~~~~v~A~k~VVlaaG~i~sp~LLl 341 (614)
|...+++.|++|++++.|++|..+ ++++.||++.++ + ++.|+ .||+|+|...+-+.|+
T Consensus 235 L~~~~~~~G~~i~~~~~V~~I~~~--~~~~~gv~~~~g---~--~~~ad-~vV~a~~~~~~~~~Ll 292 (493)
T TIGR02730 235 LVKGLEKHGGQIRYRARVTKIILE--NGKAVGVKLADG---E--KIYAK-RIVSNATRWDTFGKLL 292 (493)
T ss_pred HHHHHHHCCCEEEeCCeeeEEEec--CCcEEEEEeCCC---C--EEEcC-EEEECCChHHHHHHhC
Confidence 445556789999999999999987 678999987543 2 57897 6999999877765444
No 79
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=99.00 E-value=2e-09 Score=107.60 Aligned_cols=37 Identities=30% Similarity=0.338 Sum_probs=33.6
Q ss_pred CCcccEEEECCCCchHHHHHHHhcCCCCeEEEecCCCC
Q psy1040 73 QEEYDFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGPD 110 (614)
Q Consensus 73 ~~~yDvIVVGsG~aG~~~A~~Lae~~G~~VLlLEaG~~ 110 (614)
..+|||||||+|++|+++|++|++. |++|+|||+...
T Consensus 23 ~~~~DVvIVGgGpAGl~AA~~la~~-G~~V~liEk~~~ 59 (257)
T PRK04176 23 YLEVDVAIVGAGPSGLTAAYYLAKA-GLKVAVFERKLS 59 (257)
T ss_pred hccCCEEEECccHHHHHHHHHHHhC-CCeEEEEecCCC
Confidence 3469999999999999999999998 999999998754
No 80
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=98.98 E-value=1.7e-09 Score=101.76 Aligned_cols=36 Identities=36% Similarity=0.465 Sum_probs=30.5
Q ss_pred CcccEEEECCCCchHHHHHHHhcCCCCeEEEecCCCC
Q psy1040 74 EEYDFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGPD 110 (614)
Q Consensus 74 ~~yDvIVVGsG~aG~~~A~~Lae~~G~~VLlLEaG~~ 110 (614)
.+|||+|||+|++|+++|++||++ |+||+|+|+...
T Consensus 16 ~~~DV~IVGaGpaGl~aA~~La~~-g~kV~v~E~~~~ 51 (230)
T PF01946_consen 16 LEYDVAIVGAGPAGLTAAYYLAKA-GLKVAVIERKLS 51 (230)
T ss_dssp TEESEEEE--SHHHHHHHHHHHHH-TS-EEEEESSSS
T ss_pred ccCCEEEECCChhHHHHHHHHHHC-CCeEEEEecCCC
Confidence 479999999999999999999999 999999998744
No 81
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=98.98 E-value=5.8e-09 Score=113.92 Aligned_cols=38 Identities=26% Similarity=0.584 Sum_probs=34.2
Q ss_pred CCcccEEEECCCCchHHHHHHHhcC-CCCeEEEecCCCC
Q psy1040 73 QEEYDFVVVGGGVAGPVVAGRLVEN-PNWKVLLLEAGPD 110 (614)
Q Consensus 73 ~~~yDvIVVGsG~aG~~~A~~Lae~-~G~~VLlLEaG~~ 110 (614)
+..|||||||||+.|+++|++|++. +|++|+||||...
T Consensus 3 ~~~~DVvIIGgGIiG~slA~~L~~~~~g~~V~VlEk~~~ 41 (494)
T PRK05257 3 ESKTDVVLIGGGIMSATLGTLLKELEPEWSITMFERLDG 41 (494)
T ss_pred CccceEEEECcHHHHHHHHHHHHHhCCCCeEEEEEcCCc
Confidence 4569999999999999999999985 6899999999854
No 82
>PRK08401 L-aspartate oxidase; Provisional
Probab=98.97 E-value=5e-09 Score=114.35 Aligned_cols=33 Identities=30% Similarity=0.521 Sum_probs=31.5
Q ss_pred ccEEEECCCCchHHHHHHHhcCCCCeEEEecCCC
Q psy1040 76 YDFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGP 109 (614)
Q Consensus 76 yDvIVVGsG~aG~~~A~~Lae~~G~~VLlLEaG~ 109 (614)
+||||||||.||+++|.+|+++ |.+|+||||+.
T Consensus 2 ~DVvVVGaG~AGl~AAi~aae~-G~~V~liek~~ 34 (466)
T PRK08401 2 MKVGIVGGGLAGLTAAISLAKK-GFDVTIIGPGI 34 (466)
T ss_pred CeEEEECccHHHHHHHHHHHHC-CCeEEEEeCCC
Confidence 6999999999999999999998 99999999974
No 83
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=98.97 E-value=1.8e-08 Score=111.07 Aligned_cols=57 Identities=21% Similarity=0.257 Sum_probs=43.1
Q ss_pred hcCCCeEEEcccEEEEEEEcCCCCeEEEEEEEeCCCCceEEEEeccEEEEccCCCChHHHHH
Q psy1040 280 YKQDNLKVQLNAHVMKLNIDPKTKRALSVQFKDTNTNEIKTVKAKKEIILTAGAIGSPQLLM 341 (614)
Q Consensus 280 ~~~~n~~I~~~~~V~~I~~d~~~~ra~GV~~~~~~~g~~~~v~A~k~VVlaaG~i~sp~LLl 341 (614)
+.+.|++++.+++|++|..+ ++. .+|++.+..+|+..+|+|+ .||+|||++ +.+++.
T Consensus 165 A~~~Ga~i~~~~~V~~i~~~--~~~-~~v~~~~~~~g~~~~i~a~-~VVnAaG~w-a~~l~~ 221 (508)
T PRK12266 165 AAERGAEILTRTRVVSARRE--NGL-WHVTLEDTATGKRYTVRAR-ALVNAAGPW-VKQFLD 221 (508)
T ss_pred HHHcCCEEEcCcEEEEEEEe--CCE-EEEEEEEcCCCCEEEEEcC-EEEECCCcc-HHHHHh
Confidence 45679999999999999876 443 4677766333667789996 799999987 556654
No 84
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=98.96 E-value=3.9e-10 Score=121.64 Aligned_cols=63 Identities=24% Similarity=0.326 Sum_probs=0.0
Q ss_pred cchhhhcCCCeEEEcccEEEEEEEcCCCCeEEEEEEEeCCCCceEEEEeccEEEEccCCCChHHHHHHhCC
Q psy1040 275 FLRDKYKQDNLKVQLNAHVMKLNIDPKTKRALSVQFKDTNTNEIKTVKAKKEIILTAGAIGSPQLLMLSGV 345 (614)
Q Consensus 275 ~L~~~~~~~n~~I~~~~~V~~I~~d~~~~ra~GV~~~~~~~g~~~~v~A~k~VVlaaG~i~sp~LLl~SGi 345 (614)
.|...+.+.|++|++++.|+.++.+ +++++||.+.+.. | ..+|+|+ .||-|+| ...|+.++|+
T Consensus 95 ~l~~~l~e~gv~v~~~t~v~~v~~~--~~~i~~V~~~~~~-g-~~~i~A~-~~IDaTG---~g~l~~~aG~ 157 (428)
T PF12831_consen 95 VLDEMLAEAGVEVLLGTRVVDVIRD--GGRITGVIVETKS-G-RKEIRAK-VFIDATG---DGDLAALAGA 157 (428)
T ss_dssp -----------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccc--ccccccccccccc-c-ccccccc-ccccccc---cccccccccc
Confidence 3445556789999999999999998 7899999998763 4 7799995 8999999 3577888875
No 85
>KOG0042|consensus
Probab=98.95 E-value=7.9e-10 Score=115.21 Aligned_cols=87 Identities=16% Similarity=0.119 Sum_probs=63.4
Q ss_pred CCCcceeEEeeccccCCcccccccccchhhhcCCCeEEEcccEEEEEEEcCCCCeEEEEEEEeCCCCceEEEEeccEEEE
Q psy1040 250 GANQIGVNFAQVMVDNGVRSSTPRMFLRDKYKQDNLKVQLNAHVMKLNIDPKTKRALSVQFKDTNTNEIKTVKAKKEIIL 329 (614)
Q Consensus 250 ~~~~~g~~~~~~~~~~g~r~s~~~~~L~~~~~~~n~~I~~~~~V~~I~~d~~~~ra~GV~~~~~~~g~~~~v~A~k~VVl 329 (614)
..+.+|......+..+.+|.....+ --+.+.|+.+.-..+|.+++.++ ++++.|+++++.-||+++.|+| |.||-
T Consensus 207 ~~~L~Ga~VYyDGQ~nDaRmnl~vA---lTA~r~GA~v~Nh~ev~~Llkd~-~~kv~Ga~~rD~iTG~e~~I~A-k~VVN 281 (680)
T KOG0042|consen 207 KDNLKGAMVYYDGQHNDARMNLAVA---LTAARNGATVLNHVEVVSLLKDK-DGKVIGARARDHITGKEYEIRA-KVVVN 281 (680)
T ss_pred ccCceeEEEEecCCCchHHHHHHHH---HHHHhcchhhhhHHHHHHHhhCC-CCceeeeEEEEeecCcEEEEEE-EEEEe
Confidence 3345555555545555556543322 12357899999999999999986 5799999999988899999999 58999
Q ss_pred ccCCCChHHHHH
Q psy1040 330 TAGAIGSPQLLM 341 (614)
Q Consensus 330 aaG~i~sp~LLl 341 (614)
|+|.|.-.-..|
T Consensus 282 ATGpfsDsIr~M 293 (680)
T KOG0042|consen 282 ATGPFSDSIRKM 293 (680)
T ss_pred CCCCccHHHHhh
Confidence 999985544444
No 86
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=98.94 E-value=1.2e-08 Score=112.44 Aligned_cols=56 Identities=14% Similarity=0.262 Sum_probs=43.4
Q ss_pred hcCCCeEEEcccEEEEEEEcCCCCeEEEEEEEeCCCCceEEEEeccEEEEccCCCChHHHHH
Q psy1040 280 YKQDNLKVQLNAHVMKLNIDPKTKRALSVQFKDTNTNEIKTVKAKKEIILTAGAIGSPQLLM 341 (614)
Q Consensus 280 ~~~~n~~I~~~~~V~~I~~d~~~~ra~GV~~~~~~~g~~~~v~A~k~VVlaaG~i~sp~LLl 341 (614)
+.+.|++++.+++|++|..+ ++ ..+|.+.+.. |++.+|+|+ .||.|+|++ +.+++.
T Consensus 165 a~~~Ga~i~~~~~V~~i~~~--~~-~~~v~~~~~~-g~~~~i~a~-~VVnAaG~w-a~~l~~ 220 (502)
T PRK13369 165 AAERGATILTRTRCVSARRE--GG-LWRVETRDAD-GETRTVRAR-ALVNAAGPW-VTDVIH 220 (502)
T ss_pred HHHCCCEEecCcEEEEEEEc--CC-EEEEEEEeCC-CCEEEEEec-EEEECCCcc-HHHHHh
Confidence 45678999999999999876 34 4567776654 677889996 799999987 666654
No 87
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=98.93 E-value=1.6e-08 Score=109.72 Aligned_cols=38 Identities=29% Similarity=0.497 Sum_probs=34.1
Q ss_pred CCcccEEEECCCCchHHHHHHHhcC-CCCeEEEecCCCC
Q psy1040 73 QEEYDFVVVGGGVAGPVVAGRLVEN-PNWKVLLLEAGPD 110 (614)
Q Consensus 73 ~~~yDvIVVGsG~aG~~~A~~Lae~-~G~~VLlLEaG~~ 110 (614)
+..+||||||||++|+++|+.|++. |+++|+||||-+.
T Consensus 4 ~~~~DvvIIGgGI~G~sla~~L~~~~~~~~V~vlEr~~~ 42 (497)
T PRK13339 4 SESKDVVLVGAGILSTTFGVLLKELDPDWNIEVVERLDS 42 (497)
T ss_pred CccCCEEEECchHHHHHHHHHHHhCCCCCeEEEEEcCCC
Confidence 5679999999999999999999986 7899999999443
No 88
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.91 E-value=1.3e-08 Score=111.60 Aligned_cols=37 Identities=35% Similarity=0.496 Sum_probs=34.8
Q ss_pred cccEEEECCCCchHHHHHHHhcCCCCeEEEecCCCCCC
Q psy1040 75 EYDFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGPDEP 112 (614)
Q Consensus 75 ~yDvIVVGsG~aG~~~A~~Lae~~G~~VLlLEaG~~~~ 112 (614)
.||+||||||.+|+++|.+||++ |++|+||||.....
T Consensus 3 ~~dvvVIGaG~~GL~aAa~LA~~-G~~V~VlE~~~~~G 39 (487)
T COG1233 3 MYDVVVIGAGLNGLAAAALLARA-GLKVTVLEKNDRVG 39 (487)
T ss_pred CccEEEECCChhHHHHHHHHHhC-CCEEEEEEecCCCC
Confidence 58999999999999999999999 99999999887764
No 89
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=98.90 E-value=1.1e-08 Score=95.52 Aligned_cols=34 Identities=32% Similarity=0.433 Sum_probs=32.0
Q ss_pred CcccEEEECCCCchHHHHHHHhcCCCCeEEEecCC
Q psy1040 74 EEYDFVVVGGGVAGPVVAGRLVENPNWKVLLLEAG 108 (614)
Q Consensus 74 ~~yDvIVVGsG~aG~~~A~~Lae~~G~~VLlLEaG 108 (614)
.+-||||||+|++|+++|++||++ |.||+++|+-
T Consensus 29 ~esDViIVGaGPsGLtAAyyLAk~-g~kV~i~E~~ 62 (262)
T COG1635 29 LESDVIIVGAGPSGLTAAYYLAKA-GLKVAIFERK 62 (262)
T ss_pred hhccEEEECcCcchHHHHHHHHhC-CceEEEEEee
Confidence 357999999999999999999999 9999999986
No 90
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=98.90 E-value=1.5e-08 Score=109.76 Aligned_cols=62 Identities=10% Similarity=0.141 Sum_probs=46.3
Q ss_pred chhhhcCCCeEEEcccEEEEEEEcCCCCeEEEEEEEeCCCCceEEEEeccEEEEccCCCChHHHHHH
Q psy1040 276 LRDKYKQDNLKVQLNAHVMKLNIDPKTKRALSVQFKDTNTNEIKTVKAKKEIILTAGAIGSPQLLML 342 (614)
Q Consensus 276 L~~~~~~~n~~I~~~~~V~~I~~d~~~~ra~GV~~~~~~~g~~~~v~A~k~VVlaaG~i~sp~LLl~ 342 (614)
|...+++.|++|+++++|++|+.++++++++||....+ + .+++|+ .||||+|++...+-++.
T Consensus 129 L~~~a~~~Gv~i~~~~~v~~l~~~~~~g~v~gv~~~~~--~--~~i~ak-~VIlAtGG~~~n~~~~~ 190 (432)
T TIGR02485 129 LYSSAERLGVEIRYGIAVDRIPPEAFDGAHDGPLTTVG--T--HRITTQ-ALVLAAGGLGANRDWLR 190 (432)
T ss_pred HHHHHHHcCCEEEeCCEEEEEEecCCCCeEEEEEEcCC--c--EEEEcC-EEEEcCCCcccCHHHHH
Confidence 33445677999999999999998642478999986432 2 478885 79999999987654443
No 91
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=98.87 E-value=3.3e-09 Score=114.58 Aligned_cols=36 Identities=36% Similarity=0.615 Sum_probs=33.9
Q ss_pred CcccEEEECCCCchHHHHHHHhcCCCCeEEEecCCCC
Q psy1040 74 EEYDFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGPD 110 (614)
Q Consensus 74 ~~yDvIVVGsG~aG~~~A~~Lae~~G~~VLlLEaG~~ 110 (614)
+.|||||||||+||+++|+.|+++ |++|+||||+..
T Consensus 4 ~~~DViIVGaGpAG~~aA~~La~~-G~~V~llEr~~~ 39 (428)
T PRK10157 4 DIFDAIIVGAGLAGSVAALVLARE-GAQVLVIERGNS 39 (428)
T ss_pred ccCcEEEECcCHHHHHHHHHHHhC-CCeEEEEEcCCC
Confidence 469999999999999999999999 999999999865
No 92
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=98.82 E-value=2.7e-08 Score=103.88 Aligned_cols=57 Identities=26% Similarity=0.439 Sum_probs=46.0
Q ss_pred cchhhhcCCCeEEEcccEEEEEEEcCCCC-eEEEEEEEeCCCCceEEEEeccEEEEccCCCC
Q psy1040 275 FLRDKYKQDNLKVQLNAHVMKLNIDPKTK-RALSVQFKDTNTNEIKTVKAKKEIILTAGAIG 335 (614)
Q Consensus 275 ~L~~~~~~~n~~I~~~~~V~~I~~d~~~~-ra~GV~~~~~~~g~~~~v~A~k~VVlaaG~i~ 335 (614)
++..+.+++|++|+.++.+.+|+++ ++ .+.||.+.+.+ ++...++|+ .||||+|+++
T Consensus 139 L~~~v~~~p~I~v~e~~~a~~li~~--~~~~~~Gv~~~~~~-~~~~~~~a~-~vVLATGG~g 196 (518)
T COG0029 139 LLKKVRNRPNITVLEGAEALDLIIE--DGIGVAGVLVLNRN-GELGTFRAK-AVVLATGGLG 196 (518)
T ss_pred HHHHHhcCCCcEEEecchhhhhhhc--CCceEeEEEEecCC-CeEEEEecC-eEEEecCCCc
Confidence 3444567799999999999999998 45 55699998763 357889996 7999999874
No 93
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=98.80 E-value=1.2e-08 Score=111.80 Aligned_cols=35 Identities=46% Similarity=0.527 Sum_probs=32.7
Q ss_pred CcccEEEECCCCchHHHHHHHhcCCCCeEEEecCCC
Q psy1040 74 EEYDFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGP 109 (614)
Q Consensus 74 ~~yDvIVVGsG~aG~~~A~~Lae~~G~~VLlLEaG~ 109 (614)
.+|||||||||+||+.+|..+|+. |.+|+|||+..
T Consensus 3 ~~yDVIVVGGGpAG~eAA~~aAR~-G~kV~LiE~~~ 37 (618)
T PRK05192 3 EEYDVIVVGGGHAGCEAALAAARM-GAKTLLLTHNL 37 (618)
T ss_pred ccceEEEECchHHHHHHHHHHHHc-CCcEEEEeccc
Confidence 369999999999999999999999 99999999864
No 94
>KOG2820|consensus
Probab=98.79 E-value=3e-08 Score=98.30 Aligned_cols=61 Identities=30% Similarity=0.290 Sum_probs=46.7
Q ss_pred chhhhcCCCeEEEcccEEEEEEEcCCCCeEEEEEEEeCCCCceEEEEeccEEEEccCCCChHHHHHHh
Q psy1040 276 LRDKYKQDNLKVQLNAHVMKLNIDPKTKRALSVQFKDTNTNEIKTVKAKKEIILTAGAIGSPQLLMLS 343 (614)
Q Consensus 276 L~~~~~~~n~~I~~~~~V~~I~~d~~~~ra~GV~~~~~~~g~~~~v~A~k~VVlaaG~i~sp~LLl~S 343 (614)
+...++..|+.++.+..|+.+.++++.+..++|.+.++. .+.|+ .+|+++|+| +.+||-.|
T Consensus 159 ~~~~~~~~G~i~~dg~~v~~~~~~~e~~~~v~V~Tt~gs-----~Y~ak-kiI~t~GaW-i~klL~~~ 219 (399)
T KOG2820|consen 159 LQDKARELGVIFRDGEKVKFIKFVDEEGNHVSVQTTDGS-----IYHAK-KIIFTVGAW-INKLLPTS 219 (399)
T ss_pred HHHHHHHcCeEEecCcceeeEeeccCCCceeEEEeccCC-----eeecc-eEEEEecHH-HHhhcCcc
Confidence 344556789999999999999987666777788877652 57886 599999998 66666543
No 95
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=98.78 E-value=9.2e-08 Score=103.99 Aligned_cols=59 Identities=15% Similarity=0.293 Sum_probs=46.4
Q ss_pred hhhcCCCeEEEcccEEEEEEEcCCC--CeEEEEEEEeCCCCceEEEEeccEEEEccCCCCh
Q psy1040 278 DKYKQDNLKVQLNAHVMKLNIDPKT--KRALSVQFKDTNTNEIKTVKAKKEIILTAGAIGS 336 (614)
Q Consensus 278 ~~~~~~n~~I~~~~~V~~I~~d~~~--~ra~GV~~~~~~~g~~~~v~A~k~VVlaaG~i~s 336 (614)
..+++.|++++++++|++|.++.++ ++|+||++.....++...+.+++.||+++|++..
T Consensus 234 ~~Le~~GV~f~~~t~VtdL~~~~d~~~~~VtgI~~~~~~~~~~I~l~~~DlVivTnGs~t~ 294 (576)
T PRK13977 234 KYLEDHGVDFQYGTKVTDIDFDITGGKKTATAIHLTRNGKEETIDLTEDDLVFVTNGSITE 294 (576)
T ss_pred HHHHhCCCEEEeCCEEEEEEEcCCCCceEEEEEEEEeCCceeEEEecCCCEEEEeCCcCcc
Confidence 3457789999999999999996323 7999999986422455667777899999999854
No 96
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=98.75 E-value=5.3e-08 Score=104.21 Aligned_cols=38 Identities=45% Similarity=0.700 Sum_probs=35.2
Q ss_pred CcccEEEECCCCchHHHHHHHhcCCCCeEEEecCCCCCC
Q psy1040 74 EEYDFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGPDEP 112 (614)
Q Consensus 74 ~~yDvIVVGsG~aG~~~A~~Lae~~G~~VLlLEaG~~~~ 112 (614)
.+|||||||||+||+++|++|+++ |.+|+|||++..+.
T Consensus 2 ~~~DVvIVGaGPAGs~aA~~la~~-G~~VlvlEk~~~~G 39 (396)
T COG0644 2 MEYDVVIVGAGPAGSSAARRLAKA-GLDVLVLEKGSEPG 39 (396)
T ss_pred ceeeEEEECCchHHHHHHHHHHHc-CCeEEEEecCCCCC
Confidence 369999999999999999999999 99999999997753
No 97
>PRK10015 oxidoreductase; Provisional
Probab=98.75 E-value=2.4e-08 Score=107.81 Aligned_cols=36 Identities=39% Similarity=0.666 Sum_probs=33.9
Q ss_pred CcccEEEECCCCchHHHHHHHhcCCCCeEEEecCCCC
Q psy1040 74 EEYDFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGPD 110 (614)
Q Consensus 74 ~~yDvIVVGsG~aG~~~A~~Lae~~G~~VLlLEaG~~ 110 (614)
.+|||||||||+||+++|+.||++ |++|+||||++.
T Consensus 4 ~~~DViIVGgGpAG~~aA~~LA~~-G~~VlliEr~~~ 39 (429)
T PRK10015 4 DKFDAIVVGAGVAGSVAALVMARA-GLDVLVIERGDS 39 (429)
T ss_pred cccCEEEECcCHHHHHHHHHHHhC-CCeEEEEecCCC
Confidence 469999999999999999999999 999999999865
No 98
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=98.71 E-value=3.1e-08 Score=113.00 Aligned_cols=35 Identities=37% Similarity=0.674 Sum_probs=32.8
Q ss_pred cccEEEECCCCchHHHHHHHhcCCCCeEEEecCCCC
Q psy1040 75 EYDFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGPD 110 (614)
Q Consensus 75 ~yDvIVVGsG~aG~~~A~~Lae~~G~~VLlLEaG~~ 110 (614)
++||||||||++|+++|++|++. |++|+|||++..
T Consensus 260 ~~dVvIIGaGIaG~s~A~~La~~-G~~V~VlE~~~~ 294 (662)
T PRK01747 260 ARDAAIIGGGIAGAALALALARR-GWQVTLYEADEA 294 (662)
T ss_pred CCCEEEECccHHHHHHHHHHHHC-CCeEEEEecCCC
Confidence 58999999999999999999999 999999999853
No 99
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=98.67 E-value=6.3e-08 Score=100.87 Aligned_cols=50 Identities=20% Similarity=0.310 Sum_probs=38.5
Q ss_pred hcCCCeEEEcccEEEEEEEcCCCCeEEEEEEEeCCCCceEEEEeccEEEEccCCCChHH
Q psy1040 280 YKQDNLKVQLNAHVMKLNIDPKTKRALSVQFKDTNTNEIKTVKAKKEIILTAGAIGSPQ 338 (614)
Q Consensus 280 ~~~~n~~I~~~~~V~~I~~d~~~~ra~GV~~~~~~~g~~~~v~A~k~VVlaaG~i~sp~ 338 (614)
.+.+|++|+ +..|+.|..+ +++|.||...++ ..+.|+ .||+|+|+|.+..
T Consensus 106 ~~~~nl~i~-~~~V~~l~~e--~~~v~GV~~~~g-----~~~~a~-~vVlaTGtfl~G~ 155 (392)
T PF01134_consen 106 ESHPNLTII-QGEVTDLIVE--NGKVKGVVTKDG-----EEIEAD-AVVLATGTFLNGC 155 (392)
T ss_dssp HTSTTEEEE-ES-EEEEEEC--TTEEEEEEETTS-----EEEEEC-EEEE-TTTGBTSE
T ss_pred hcCCCeEEE-EcccceEEec--CCeEEEEEeCCC-----CEEecC-EEEEecccccCce
Confidence 456999997 6799999998 789999998654 378896 7999999965443
No 100
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=98.65 E-value=6.8e-08 Score=103.06 Aligned_cols=37 Identities=38% Similarity=0.556 Sum_probs=34.1
Q ss_pred CCcccEEEECCCCchHHHHHHHhcCCCCeEEEecCCCC
Q psy1040 73 QEEYDFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGPD 110 (614)
Q Consensus 73 ~~~yDvIVVGsG~aG~~~A~~Lae~~G~~VLlLEaG~~ 110 (614)
+.++|+||||+|++|+++|++|++. |.+|+|+|++..
T Consensus 2 ~~~~~vvVIGgGi~Gls~A~~La~~-G~~V~vie~~~~ 38 (387)
T COG0665 2 SMKMDVVIIGGGIVGLSAAYYLAER-GADVTVLEAGEA 38 (387)
T ss_pred CCcceEEEECCcHHHHHHHHHHHHc-CCEEEEEecCcc
Confidence 3468999999999999999999999 999999999865
No 101
>KOG2404|consensus
Probab=98.60 E-value=4.4e-08 Score=96.19 Aligned_cols=49 Identities=20% Similarity=0.422 Sum_probs=42.5
Q ss_pred CeEEEcccEEEEEEEcCCCCeEEEEEEEeCCCCceEEEEeccEEEEccCCCCh
Q psy1040 284 NLKVQLNAHVMKLNIDPKTKRALSVQFKDTNTNEIKTVKAKKEIILTAGAIGS 336 (614)
Q Consensus 284 n~~I~~~~~V~~I~~d~~~~ra~GV~~~~~~~g~~~~v~A~k~VVlaaG~i~s 336 (614)
-++|.++++|++|+.+ +++|.||++.+.+ |+...+.++ .||+|+|+|.-
T Consensus 159 ~~ki~~nskvv~il~n--~gkVsgVeymd~s-gek~~~~~~-~VVlatGGf~y 207 (477)
T KOG2404|consen 159 LVKILLNSKVVDILRN--NGKVSGVEYMDAS-GEKSKIIGD-AVVLATGGFGY 207 (477)
T ss_pred HHhhhhcceeeeeecC--CCeEEEEEEEcCC-CCccceecC-ceEEecCCcCc
Confidence 4899999999999965 7999999999765 777778886 79999999985
No 102
>PLN02985 squalene monooxygenase
Probab=98.57 E-value=1.4e-06 Score=95.98 Aligned_cols=36 Identities=28% Similarity=0.490 Sum_probs=33.7
Q ss_pred CCcccEEEECCCCchHHHHHHHhcCCCCeEEEecCCC
Q psy1040 73 QEEYDFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGP 109 (614)
Q Consensus 73 ~~~yDvIVVGsG~aG~~~A~~Lae~~G~~VLlLEaG~ 109 (614)
+..||+||||||++|+++|..|+++ |++|+||||..
T Consensus 41 ~~~~DViIVGAG~aGlalA~aLa~~-G~~V~vlEr~~ 76 (514)
T PLN02985 41 DGATDVIIVGAGVGGSALAYALAKD-GRRVHVIERDL 76 (514)
T ss_pred CCCceEEEECCCHHHHHHHHHHHHc-CCeEEEEECcC
Confidence 5679999999999999999999999 99999999974
No 103
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=98.57 E-value=4.1e-07 Score=97.75 Aligned_cols=39 Identities=33% Similarity=0.512 Sum_probs=36.5
Q ss_pred CCcccEEEECCCCchHHHHHHHhcCCCCeEEEecCCCCCC
Q psy1040 73 QEEYDFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGPDEP 112 (614)
Q Consensus 73 ~~~yDvIVVGsG~aG~~~A~~Lae~~G~~VLlLEaG~~~~ 112 (614)
+++|||||||+|.+||++|..||++ |+|||+||+.+..+
T Consensus 2 ~~~~DViViGtGL~e~ilAa~Ls~~-GkkVLhlD~n~~yG 40 (443)
T PTZ00363 2 DETYDVIVCGTGLKECILSGLLSVN-GKKVLHMDRNPYYG 40 (443)
T ss_pred CCcceEEEECCChHHHHHHhhhhhC-CCEEEEecCCCCcC
Confidence 4579999999999999999999999 99999999998875
No 104
>KOG1298|consensus
Probab=98.55 E-value=1.8e-07 Score=94.25 Aligned_cols=53 Identities=15% Similarity=0.164 Sum_probs=42.5
Q ss_pred hhcCCCeEEEcccEEEEEEEcCCCCeEEEEEEEeCCCCceEEEEeccEEEEccCCCCh
Q psy1040 279 KYKQDNLKVQLNAHVMKLNIDPKTKRALSVQFKDTNTNEIKTVKAKKEIILTAGAIGS 336 (614)
Q Consensus 279 ~~~~~n~~I~~~~~V~~I~~d~~~~ra~GV~~~~~~~g~~~~v~A~k~VVlaaG~i~s 336 (614)
+...+|+++..+ .|..++.| .+.+.||++.+.. |++.+..|. -.|+|-|-|..
T Consensus 157 a~slpNV~~eeG-tV~sLlee--~gvvkGV~yk~k~-gee~~~~Ap-LTvVCDGcfSn 209 (509)
T KOG1298|consen 157 AASLPNVRLEEG-TVKSLLEE--EGVVKGVTYKNKE-GEEVEAFAP-LTVVCDGCFSN 209 (509)
T ss_pred HhcCCCeEEeee-eHHHHHhc--cCeEEeEEEecCC-CceEEEecc-eEEEecchhHH
Confidence 345789998765 68888877 6799999999876 677888996 79999998854
No 105
>KOG2844|consensus
Probab=98.55 E-value=2e-07 Score=99.75 Aligned_cols=51 Identities=18% Similarity=0.167 Sum_probs=41.9
Q ss_pred chhhhcCCCeEEEcccEEEEEEEcCCCCeEEEEEEEeCCCCceEEEEeccEEEEccCCCC
Q psy1040 276 LRDKYKQDNLKVQLNAHVMKLNIDPKTKRALSVQFKDTNTNEIKTVKAKKEIILTAGAIG 335 (614)
Q Consensus 276 L~~~~~~~n~~I~~~~~V~~I~~d~~~~ra~GV~~~~~~~g~~~~v~A~k~VVlaaG~i~ 335 (614)
|..++++.|+.|+.+|.|++|... +++..||++..+ .|++. .||-|||.|.
T Consensus 193 la~~A~~~GA~viE~cpV~~i~~~--~~~~~gVeT~~G------~iet~-~~VNaaGvWA 243 (856)
T KOG2844|consen 193 LARAASALGALVIENCPVTGLHVE--TDKFGGVETPHG------SIETE-CVVNAAGVWA 243 (856)
T ss_pred HHHHHHhcCcEEEecCCcceEEee--cCCccceeccCc------ceecc-eEEechhHHH
Confidence 445567889999999999999998 445559998876 68997 5999999875
No 106
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.53 E-value=7.1e-07 Score=96.23 Aligned_cols=37 Identities=35% Similarity=0.696 Sum_probs=34.4
Q ss_pred CCcccEEEECCCCchHHHHHHHhcCCCCeEEEecCCCC
Q psy1040 73 QEEYDFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGPD 110 (614)
Q Consensus 73 ~~~yDvIVVGsG~aG~~~A~~Lae~~G~~VLlLEaG~~ 110 (614)
+.+|||+|||||++|+++|..|++. |++|+|+|+.+.
T Consensus 16 ~~~~dV~IvGaG~aGl~~A~~L~~~-G~~v~v~E~~~~ 52 (415)
T PRK07364 16 SLTYDVAIVGGGIVGLTLAAALKDS-GLRIALIEAQPA 52 (415)
T ss_pred ccccCEEEECcCHHHHHHHHHHhcC-CCEEEEEecCCc
Confidence 3469999999999999999999999 999999999865
No 107
>PRK06185 hypothetical protein; Provisional
Probab=98.51 E-value=1.2e-06 Score=94.25 Aligned_cols=60 Identities=18% Similarity=0.240 Sum_probs=43.4
Q ss_pred hcCCCeEEEcccEEEEEEEcCCCCeEEEEEEEeCCCCceEEEEeccEEEEccCCCChHHHHHHhCCC
Q psy1040 280 YKQDNLKVQLNAHVMKLNIDPKTKRALSVQFKDTNTNEIKTVKAKKEIILTAGAIGSPQLLMLSGVG 346 (614)
Q Consensus 280 ~~~~n~~I~~~~~V~~I~~d~~~~ra~GV~~~~~~~g~~~~v~A~k~VVlaaG~i~sp~LLl~SGig 346 (614)
.+.+|++++.++.|+++..+ ++++++|.+... +...+++|+ .||.|.|+. |. +-...|+.
T Consensus 119 ~~~~~v~i~~~~~v~~~~~~--~~~v~~v~~~~~--~g~~~i~a~-~vI~AdG~~-S~-vr~~~gi~ 178 (407)
T PRK06185 119 SAYPNFTLRMGAEVTGLIEE--GGRVTGVRARTP--DGPGEIRAD-LVVGADGRH-SR-VRALAGLE 178 (407)
T ss_pred hhCCCcEEEeCCEEEEEEEe--CCEEEEEEEEcC--CCcEEEEeC-EEEECCCCc-hH-HHHHcCCC
Confidence 34578999999999999987 578888887654 333578996 788888865 43 33444554
No 108
>PRK06126 hypothetical protein; Provisional
Probab=98.47 E-value=1.8e-06 Score=96.58 Aligned_cols=37 Identities=27% Similarity=0.364 Sum_probs=33.8
Q ss_pred CCcccEEEECCCCchHHHHHHHhcCCCCeEEEecCCCC
Q psy1040 73 QEEYDFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGPD 110 (614)
Q Consensus 73 ~~~yDvIVVGsG~aG~~~A~~Lae~~G~~VLlLEaG~~ 110 (614)
..++||+|||||++|+++|..|++. |++|+|+|+.+.
T Consensus 5 ~~~~~VlIVGaGpaGL~~Al~La~~-G~~v~viEr~~~ 41 (545)
T PRK06126 5 TSETPVLIVGGGPVGLALALDLGRR-GVDSILVERKDG 41 (545)
T ss_pred CccCCEEEECCCHHHHHHHHHHHHC-CCcEEEEeCCCC
Confidence 3469999999999999999999999 999999998754
No 109
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=98.46 E-value=2e-06 Score=89.98 Aligned_cols=68 Identities=29% Similarity=0.381 Sum_probs=51.1
Q ss_pred cchhhhcCCCeEEEcccEEEEEEEcCCCCeEEEEEEEeCCCCceEEEEeccEEEEccCCCChHHHHHHhCCC
Q psy1040 275 FLRDKYKQDNLKVQLNAHVMKLNIDPKTKRALSVQFKDTNTNEIKTVKAKKEIILTAGAIGSPQLLMLSGVG 346 (614)
Q Consensus 275 ~L~~~~~~~n~~I~~~~~V~~I~~d~~~~ra~GV~~~~~~~g~~~~v~A~k~VVlaaG~i~sp~LLl~SGig 346 (614)
++.-+.+++|++|.++++|++|...++ ++ --|.+.+..+|+..+|+|+ -|++.||+. +=.||..|||.
T Consensus 187 l~~~l~~~~~~~~~~~~eV~~i~r~~d-g~-W~v~~~~~~~~~~~~v~a~-FVfvGAGG~-aL~LLqksgi~ 254 (488)
T PF06039_consen 187 LVEYLQKQKGFELHLNHEVTDIKRNGD-GR-WEVKVKDLKTGEKREVRAK-FVFVGAGGG-ALPLLQKSGIP 254 (488)
T ss_pred HHHHHHhCCCcEEEecCEeCeeEECCC-CC-EEEEEEecCCCCeEEEECC-EEEECCchH-hHHHHHHcCCh
Confidence 344445667999999999999999853 32 2355555444788899996 899999985 77788999984
No 110
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=98.46 E-value=9.4e-07 Score=95.94 Aligned_cols=37 Identities=27% Similarity=0.406 Sum_probs=34.0
Q ss_pred CcccEEEECCCCchHHHHHHHhcCCCCeEEEecCCCCC
Q psy1040 74 EEYDFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGPDE 111 (614)
Q Consensus 74 ~~yDvIVVGsG~aG~~~A~~Lae~~G~~VLlLEaG~~~ 111 (614)
...+|+|||||++|+++|.+|.+. |.+|+|+|+++..
T Consensus 9 ~~~~VaIIGAG~aGL~aA~~l~~~-G~~v~vfE~~~~v 45 (461)
T PLN02172 9 NSQHVAVIGAGAAGLVAARELRRE-GHTVVVFEREKQV 45 (461)
T ss_pred CCCCEEEECCcHHHHHHHHHHHhc-CCeEEEEecCCCC
Confidence 458999999999999999999999 9999999998763
No 111
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=98.45 E-value=2.2e-07 Score=99.47 Aligned_cols=31 Identities=35% Similarity=0.583 Sum_probs=29.3
Q ss_pred EEECCCCchHHHHHHHhcCCCCeEEEecCCCC
Q psy1040 79 VVVGGGVAGPVVAGRLVENPNWKVLLLEAGPD 110 (614)
Q Consensus 79 IVVGsG~aG~~~A~~Lae~~G~~VLlLEaG~~ 110 (614)
||||||++|+++|.+|+++ |.+|+||||.+.
T Consensus 1 vIIGgG~aGl~aAi~aa~~-G~~V~llEk~~~ 31 (400)
T TIGR00275 1 IIIGGGAAGLMAAITAARE-GLSVLLLEKNKK 31 (400)
T ss_pred CEEEEeHHHHHHHHHHHhc-CCcEEEEecCcc
Confidence 6999999999999999998 999999999865
No 112
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=98.43 E-value=2.9e-07 Score=88.82 Aligned_cols=61 Identities=21% Similarity=0.468 Sum_probs=37.8
Q ss_pred cchhhhcCCCeEEEcccEEEEEEEcCCCCeEEEEEEEeCCCCceEEEEeccEEEEccCCCChHHHHHHhC
Q psy1040 275 FLRDKYKQDNLKVQLNAHVMKLNIDPKTKRALSVQFKDTNTNEIKTVKAKKEIILTAGAIGSPQLLMLSG 344 (614)
Q Consensus 275 ~L~~~~~~~n~~I~~~~~V~~I~~d~~~~ra~GV~~~~~~~g~~~~v~A~k~VVlaaG~i~sp~LLl~SG 344 (614)
||...+++.+++|+++++|+++..++ ++ --|++.+ + .+++|+ .||+|+|.+..|+.+..-|
T Consensus 87 yl~~~~~~~~l~i~~~~~V~~v~~~~--~~-w~v~~~~---~--~~~~a~-~VVlAtG~~~~p~~p~~~g 147 (203)
T PF13738_consen 87 YLQEYAERFGLEIRFNTRVESVRRDG--DG-WTVTTRD---G--RTIRAD-RVVLATGHYSHPRIPDIPG 147 (203)
T ss_dssp HHHHHHHHTTGGEETS--EEEEEEET--TT-EEEEETT---S---EEEEE-EEEE---SSCSB---S-TT
T ss_pred HHHHHHhhcCcccccCCEEEEEEEec--cE-EEEEEEe---c--ceeeee-eEEEeeeccCCCCcccccc
Confidence 67777777788899999999999984 33 3355433 3 577896 7999999999998765433
No 113
>KOG2415|consensus
Probab=98.42 E-value=5.5e-07 Score=91.45 Aligned_cols=72 Identities=15% Similarity=0.146 Sum_probs=52.0
Q ss_pred ccccchhhhcCCCeEEEcccEEEEEEEcCCCCeEEEEEEEeC---CCCc-------eEEEEeccEEEEccCCCC--hHHH
Q psy1040 272 PRMFLRDKYKQDNLKVQLNAHVMKLNIDPKTKRALSVQFKDT---NTNE-------IKTVKAKKEIILTAGAIG--SPQL 339 (614)
Q Consensus 272 ~~~~L~~~~~~~n~~I~~~~~V~~I~~d~~~~ra~GV~~~~~---~~g~-------~~~v~A~k~VVlaaG~i~--sp~L 339 (614)
...+|...++.-|++|..+..+..|++++ ++.|.||.+.+- .+|. -..+.|+ ..|+|-|.-+ |-|+
T Consensus 185 ~v~wLg~kAEe~GvEiyPg~aaSevly~e-dgsVkGiaT~D~GI~k~G~pKd~FerGme~hak-~TifAEGc~G~Lskqi 262 (621)
T KOG2415|consen 185 LVRWLGEKAEELGVEIYPGFAASEVLYDE-DGSVKGIATNDVGISKDGAPKDTFERGMEFHAK-VTIFAEGCHGSLSKQI 262 (621)
T ss_pred HHHHHHHHHHhhCceeccccchhheeEcC-CCcEeeEeeccccccCCCCccccccccceecce-eEEEeccccchhHHHH
Confidence 34567767778899999999999999987 589999987653 0121 2467884 7888888665 4666
Q ss_pred HHHhCC
Q psy1040 340 LMLSGV 345 (614)
Q Consensus 340 Ll~SGi 345 (614)
+..=.+
T Consensus 263 ~kkf~L 268 (621)
T KOG2415|consen 263 IKKFDL 268 (621)
T ss_pred HHHhCc
Confidence 665433
No 114
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=98.40 E-value=1e-06 Score=92.37 Aligned_cols=36 Identities=39% Similarity=0.591 Sum_probs=31.6
Q ss_pred cccEEEECCCCchHHHHHHHhcCCCCeEEEecCCCCC
Q psy1040 75 EYDFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGPDE 111 (614)
Q Consensus 75 ~yDvIVVGsG~aG~~~A~~Lae~~G~~VLlLEaG~~~ 111 (614)
+|||||||||++|+++|..|+++ |++|+|+|+.+..
T Consensus 1 ~~dV~IvGaG~aGl~~A~~L~~~-G~~v~i~E~~~~~ 36 (356)
T PF01494_consen 1 EYDVAIVGAGPAGLAAALALARA-GIDVTIIERRPDP 36 (356)
T ss_dssp EEEEEEE--SHHHHHHHHHHHHT-TCEEEEEESSSSC
T ss_pred CceEEEECCCHHHHHHHHHHHhc-ccccccchhcccc
Confidence 58999999999999999999999 9999999998653
No 115
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=98.39 E-value=1.7e-06 Score=83.57 Aligned_cols=33 Identities=33% Similarity=0.504 Sum_probs=31.4
Q ss_pred cEEEECCCCchHHHHHHHhcCCCCeEEEecCCCC
Q psy1040 77 DFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGPD 110 (614)
Q Consensus 77 DvIVVGsG~aG~~~A~~Lae~~G~~VLlLEaG~~ 110 (614)
+++|||+|++|+++|+.|+++ |.+|+|+|||.-
T Consensus 3 siaIVGaGiAGl~aA~~L~~a-G~~vtV~eKg~G 35 (331)
T COG3380 3 SIAIVGAGIAGLAAAYALREA-GREVTVFEKGRG 35 (331)
T ss_pred cEEEEccchHHHHHHHHHHhc-CcEEEEEEcCCC
Confidence 699999999999999999999 999999999955
No 116
>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.36 E-value=2.7e-06 Score=95.04 Aligned_cols=58 Identities=16% Similarity=0.117 Sum_probs=47.5
Q ss_pred hhhhcCCCeEEEcccEEEEEEEcCCCCeEEEEEEEeCCCCceEEEEeccEEEEccCCCCh
Q psy1040 277 RDKYKQDNLKVQLNAHVMKLNIDPKTKRALSVQFKDTNTNEIKTVKAKKEIILTAGAIGS 336 (614)
Q Consensus 277 ~~~~~~~n~~I~~~~~V~~I~~d~~~~ra~GV~~~~~~~g~~~~v~A~k~VVlaaG~i~s 336 (614)
.....+.|++|+.++.+++|+.++ +++|+||.+.+..+|+.+.|+|+ .||||+|++..
T Consensus 133 ~~~~~~~gi~i~~~~~~~~Li~~~-~g~v~Gv~~~~~~~g~~~~i~Ak-aVVLATGG~~~ 190 (570)
T PRK05675 133 YQGNLKNGTTFLNEWYAVDLVKNQ-DGAVVGVIAICIETGETVYIKSK-ATVLATGGAGR 190 (570)
T ss_pred HHHHhccCCEEEECcEEEEEEEcC-CCeEEEEEEEEcCCCcEEEEecC-eEEECCCCccc
Confidence 333456799999999999999863 58999999876434888899995 89999999875
No 117
>PRK07045 putative monooxygenase; Reviewed
Probab=98.35 E-value=1.6e-06 Score=92.58 Aligned_cols=36 Identities=25% Similarity=0.384 Sum_probs=33.9
Q ss_pred CcccEEEECCCCchHHHHHHHhcCCCCeEEEecCCCC
Q psy1040 74 EEYDFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGPD 110 (614)
Q Consensus 74 ~~yDvIVVGsG~aG~~~A~~Lae~~G~~VLlLEaG~~ 110 (614)
.++||+|||||++|+++|..|+++ |++|+|+|+.+.
T Consensus 4 ~~~~V~IiGgGpaGl~~A~~L~~~-G~~v~v~E~~~~ 39 (388)
T PRK07045 4 NPVDVLINGSGIAGVALAHLLGAR-GHSVTVVERAAR 39 (388)
T ss_pred ceeEEEEECCcHHHHHHHHHHHhc-CCcEEEEeCCCc
Confidence 468999999999999999999999 999999999865
No 118
>PRK08244 hypothetical protein; Provisional
Probab=98.34 E-value=3.6e-06 Score=92.93 Aligned_cols=35 Identities=26% Similarity=0.533 Sum_probs=33.0
Q ss_pred cccEEEECCCCchHHHHHHHhcCCCCeEEEecCCCC
Q psy1040 75 EYDFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGPD 110 (614)
Q Consensus 75 ~yDvIVVGsG~aG~~~A~~Lae~~G~~VLlLEaG~~ 110 (614)
+|||+|||||++|+++|..|++. |++|+||||.+.
T Consensus 2 ~~dVlIVGaGpaGl~lA~~L~~~-G~~v~viEr~~~ 36 (493)
T PRK08244 2 KYEVIIIGGGPVGLMLASELALA-GVKTCVIERLKE 36 (493)
T ss_pred CCCEEEECCCHHHHHHHHHHHHC-CCcEEEEecCCC
Confidence 48999999999999999999998 999999999865
No 119
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=98.34 E-value=4.2e-06 Score=89.38 Aligned_cols=33 Identities=36% Similarity=0.459 Sum_probs=31.8
Q ss_pred cccEEEECCCCchHHHHHHHhcCCCCeEEEecCC
Q psy1040 75 EYDFVVVGGGVAGPVVAGRLVENPNWKVLLLEAG 108 (614)
Q Consensus 75 ~yDvIVVGsG~aG~~~A~~Lae~~G~~VLlLEaG 108 (614)
.+||+|||||++|+++|..|+++ |++|+|||+.
T Consensus 2 ~~dV~IvGaG~aGl~lA~~L~~~-G~~V~l~E~~ 34 (387)
T COG0654 2 MLDVAIVGAGPAGLALALALARA-GLDVTLLERA 34 (387)
T ss_pred CCCEEEECCCHHHHHHHHHHHhC-CCcEEEEccC
Confidence 47999999999999999999999 9999999997
No 120
>KOG4254|consensus
Probab=98.33 E-value=5.5e-07 Score=92.56 Aligned_cols=59 Identities=19% Similarity=0.285 Sum_probs=49.5
Q ss_pred cchhhhcCCCeEEEcccEEEEEEEcCCCCeEEEEEEEeCCCCceEEEEeccEEEEccCCCChHHHHH
Q psy1040 275 FLRDKYKQDNLKVQLNAHVMKLNIDPKTKRALSVQFKDTNTNEIKTVKAKKEIILTAGAIGSPQLLM 341 (614)
Q Consensus 275 ~L~~~~~~~n~~I~~~~~V~~I~~d~~~~ra~GV~~~~~~~g~~~~v~A~k~VVlaaG~i~sp~LLl 341 (614)
.+.+.+++.|.+|.+++.|.+|++| +|+|.||.+.++ .++++ |.||-.|+-+.|-.-|+
T Consensus 269 aia~~~~~~GaeI~tka~Vq~Illd--~gka~GV~L~dG-----~ev~s-k~VvSNAt~~~Tf~kLl 327 (561)
T KOG4254|consen 269 AIAEGAKRAGAEIFTKATVQSILLD--SGKAVGVRLADG-----TEVRS-KIVVSNATPWDTFEKLL 327 (561)
T ss_pred HHHHHHHhccceeeehhhhhheecc--CCeEEEEEecCC-----cEEEe-eeeecCCchHHHHHHhC
Confidence 3556678899999999999999999 699999999886 36778 68999999999874444
No 121
>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit. Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=98.30 E-value=7.6e-06 Score=90.79 Aligned_cols=63 Identities=19% Similarity=0.274 Sum_probs=50.7
Q ss_pred hhcCCCeEEEcccEEEEEEEcCCCCeEEEEEEEeCCCCceEEEEeccEEEEccCCCChHHHHHHhCC
Q psy1040 279 KYKQDNLKVQLNAHVMKLNIDPKTKRALSVQFKDTNTNEIKTVKAKKEIILTAGAIGSPQLLMLSGV 345 (614)
Q Consensus 279 ~~~~~n~~I~~~~~V~~I~~d~~~~ra~GV~~~~~~~g~~~~v~A~k~VVlaaG~i~sp~LLl~SGi 345 (614)
.+.+.|++|+++++|++|..+ +++++||++.+..+|+..+|+|+ .||+|||++ +..|+...|+
T Consensus 137 ~A~~~Ga~i~~~t~V~~i~~~--~~~v~gv~v~~~~~g~~~~i~a~-~VVnAaG~w-a~~l~~~~g~ 199 (516)
T TIGR03377 137 DAQEHGARIFTYTKVTGLIRE--GGRVTGVKVEDHKTGEEERIEAQ-VVINAAGIW-AGRIAEYAGL 199 (516)
T ss_pred HHHHcCCEEEcCcEEEEEEEE--CCEEEEEEEEEcCCCcEEEEEcC-EEEECCCcc-hHHHHHhcCC
Confidence 345679999999999999987 68899999876433667789996 699999976 6777766664
No 122
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=98.29 E-value=5.5e-06 Score=88.97 Aligned_cols=37 Identities=46% Similarity=0.610 Sum_probs=34.0
Q ss_pred CCcccEEEECCCCchHHHHHHHhcCCCCeEEEecCCCC
Q psy1040 73 QEEYDFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGPD 110 (614)
Q Consensus 73 ~~~yDvIVVGsG~aG~~~A~~Lae~~G~~VLlLEaG~~ 110 (614)
..+||+||||+|+||-++|.++|+. |+||+|+|+++.
T Consensus 2 ~~~yDvvVIG~GpaG~~aA~raa~~-G~kvalvE~~~~ 38 (454)
T COG1249 2 MKEYDVVVIGAGPAGYVAAIRAAQL-GLKVALVEKGER 38 (454)
T ss_pred CccccEEEECCCHHHHHHHHHHHhC-CCCEEEEeecCC
Confidence 3479999999999999999999999 999999999853
No 123
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=98.28 E-value=3.3e-06 Score=92.78 Aligned_cols=33 Identities=36% Similarity=0.453 Sum_probs=31.4
Q ss_pred ccEEEECCCCchHHHHHHHhcCCCCeEEEecCCC
Q psy1040 76 YDFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGP 109 (614)
Q Consensus 76 yDvIVVGsG~aG~~~A~~Lae~~G~~VLlLEaG~ 109 (614)
|||||||+|.+|+.+|..+++. |.+|+|||+..
T Consensus 1 yDViVIGaG~AGl~aA~ala~~-G~~v~Lie~~~ 33 (617)
T TIGR00136 1 FDVIVIGGGHAGCEAALAAARM-GAKTLLLTLNL 33 (617)
T ss_pred CeEEEECccHHHHHHHHHHHHC-CCCEEEEeccc
Confidence 7999999999999999999998 99999999874
No 124
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=98.27 E-value=2e-06 Score=90.98 Aligned_cols=52 Identities=25% Similarity=0.333 Sum_probs=39.4
Q ss_pred hcCCCeEEEcccEEEEEEEcCCCCeEEEEEEEeCCCCceEEEEeccEEEEccCCCChHHH
Q psy1040 280 YKQDNLKVQLNAHVMKLNIDPKTKRALSVQFKDTNTNEIKTVKAKKEIILTAGAIGSPQL 339 (614)
Q Consensus 280 ~~~~n~~I~~~~~V~~I~~d~~~~ra~GV~~~~~~~g~~~~v~A~k~VVlaaG~i~sp~L 339 (614)
.+.+|++|+.+ .|+.|++++ +.+|.||.+..+ ..+.|+ .|||++|+|-.-++
T Consensus 111 e~~~NL~l~q~-~v~dli~e~-~~~v~GV~t~~G-----~~~~a~-aVVlTTGTFL~G~I 162 (621)
T COG0445 111 ENQPNLHLLQG-EVEDLIVEE-GQRVVGVVTADG-----PEFHAK-AVVLTTGTFLRGKI 162 (621)
T ss_pred hcCCCceehHh-hhHHHhhcC-CCeEEEEEeCCC-----CeeecC-EEEEeecccccceE
Confidence 35789999865 688888863 347999998776 378895 89999999854433
No 125
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=98.26 E-value=5.8e-06 Score=88.45 Aligned_cols=35 Identities=20% Similarity=0.306 Sum_probs=32.8
Q ss_pred cccEEEECCCCchHHHHHHHhcCCCCeEEEecCCCC
Q psy1040 75 EYDFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGPD 110 (614)
Q Consensus 75 ~yDvIVVGsG~aG~~~A~~Lae~~G~~VLlLEaG~~ 110 (614)
.+||+|||+|++|+++|..|++. |++|+|+|+.+.
T Consensus 2 ~~dV~IvGaGpaGl~~A~~L~~~-G~~v~v~E~~~~ 36 (392)
T PRK08243 2 RTQVAIIGAGPAGLLLGQLLHLA-GIDSVVLERRSR 36 (392)
T ss_pred cceEEEECCCHHHHHHHHHHHhc-CCCEEEEEcCCc
Confidence 47999999999999999999998 999999999864
No 126
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=98.25 E-value=1.9e-05 Score=88.04 Aligned_cols=37 Identities=35% Similarity=0.503 Sum_probs=34.2
Q ss_pred CCcccEEEECCCCchHHHHHHHhcCCCCeEEEecCCCC
Q psy1040 73 QEEYDFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGPD 110 (614)
Q Consensus 73 ~~~yDvIVVGsG~aG~~~A~~Lae~~G~~VLlLEaG~~ 110 (614)
..++||+|||+|++|+++|..|++. |++|+|||+.+.
T Consensus 8 ~~~~dV~IVGaGp~Gl~lA~~L~~~-G~~v~v~Er~~~ 44 (538)
T PRK06183 8 AHDTDVVIVGAGPVGLTLANLLGQY-GVRVLVLERWPT 44 (538)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHC-CCcEEEEecCCC
Confidence 4569999999999999999999998 999999999865
No 127
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=98.24 E-value=1e-05 Score=86.12 Aligned_cols=34 Identities=44% Similarity=0.721 Sum_probs=32.1
Q ss_pred cEEEECCCCchHHHHHHHhcCCCCeEEEecCCCCC
Q psy1040 77 DFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGPDE 111 (614)
Q Consensus 77 DvIVVGsG~aG~~~A~~Lae~~G~~VLlLEaG~~~ 111 (614)
||||||||++|+++|..|+++ |++|+|+||.+..
T Consensus 1 dViIvGaG~aGl~~A~~L~~~-G~~v~v~Er~~~~ 34 (385)
T TIGR01988 1 DIVIVGGGMVGLALALALARS-GLKIALIEATPAE 34 (385)
T ss_pred CEEEECCCHHHHHHHHHHhcC-CCEEEEEeCCCcc
Confidence 899999999999999999999 9999999999763
No 128
>KOG2665|consensus
Probab=98.24 E-value=6.3e-06 Score=81.16 Aligned_cols=211 Identities=20% Similarity=0.238 Sum_probs=113.5
Q ss_pred CCcccEEEECCCCchHHHHHHHhc-CCCCeEEEecCCCCCCCccccccccccccCCcccccceecccccccccCCCeeee
Q psy1040 73 QEEYDFVVVGGGVAGPVVAGRLVE-NPNWKVLLLEAGPDEPTVTSVPGFAASAVGTHLDWKYKTERNKYACLSTGGICEW 151 (614)
Q Consensus 73 ~~~yDvIVVGsG~aG~~~A~~Lae-~~G~~VLlLEaG~~~~~~~~~p~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~ 151 (614)
...||.||||+|+.|++.|.+|+- +|+.+|+|||+.......+.
T Consensus 46 ~~~~D~VvvGgGiVGlAsARel~lrhp~l~V~vleke~~la~hqS----------------------------------- 90 (453)
T KOG2665|consen 46 KERYDLVVVGGGIVGLASARELSLRHPSLKVAVLEKEKSLAVHQS----------------------------------- 90 (453)
T ss_pred cccccEEEECCceeehhhhHHHhhcCCCceEEeeehhhhhceeec-----------------------------------
Confidence 357999999999999999999985 48999999999855321100
Q ss_pred cCceeeccccccCCceeecCChhhHHHHHHcCCCCCChhhHHHHHHhhhcCCCCCCCCCCccCCCCCeeeeeCCCCCchh
Q psy1040 152 PRGKMLAGTGAMTGMMYTRSHPSIYDEWQRQGNPGWGFSDVLRYFIKSEHNLNRDQVDPEYHGYDGPLKVQRFSSYPPIG 231 (614)
Q Consensus 152 ~~g~~lGGsS~~n~~~~~r~~~~d~~~w~~~g~~~w~~~~l~~y~~~~e~~~~~~~~~~~~~~~~g~l~v~~~~~~~~~~ 231 (614)
|. -|..+.+++|..+..-.-+.-.+ ..+-+..|+++-+- -+...|.+-|...+..-|..
T Consensus 91 --gh---NSgViHaGIYY~P~SLKAklCV~------G~~LlY~yc~e~~I----------pyKk~GKLIVAt~~~EiprL 149 (453)
T KOG2665|consen 91 --GH---NSGVIHAGIYYKPGSLKAKLCVE------GRELLYEYCDEKKI----------PYKKTGKLIVATESEEIPRL 149 (453)
T ss_pred --cc---ccceeeeeeeeCCcccchhhhhc------cHHHHHHHhhhcCC----------ChhhcceEEEEeChhhcchH
Confidence 00 12334555555544321111100 12223345544321 23345777776666566666
Q ss_pred HHHHHHHHHcCCCcC-CCCCCCcc---eeEEeecc--c-cCCc-cc-ccccccchhhhcCCCeEEEcccEEEEEEEcCCC
Q psy1040 232 EDIIKAGKELGYASG-DFNGANQI---GVNFAQVM--V-DNGV-RS-STPRMFLRDKYKQDNLKVQLNAHVMKLNIDPKT 302 (614)
Q Consensus 232 ~~~~~a~~~~G~~~~-d~~~~~~~---g~~~~~~~--~-~~g~-r~-s~~~~~L~~~~~~~n~~I~~~~~V~~I~~d~~~ 302 (614)
+.+++...+.|++-. .+.+.+.. -++.+... + +.|. -+ +....|... .+..+.+|.++-++.++..+.+.
T Consensus 150 d~L~~~g~qN~v~glrmieg~ei~~~EP~crgvkAl~sPhtGIvD~~~v~ls~~ed-F~~~gg~i~~n~~l~g~~~n~~~ 228 (453)
T KOG2665|consen 150 DALMHRGTQNGVPGLRMIEGSEIMEMEPYCRGVKALLSPHTGIVDWGSVTLSFGED-FDFMGGRIYTNFRLQGIAQNKEA 228 (453)
T ss_pred HHHHHhhhhcCCCCeeeeccchhhhcChhhhhhhhhcCCCcceeehHHHHHHHHHH-HHHhcccccccceeccchhccCC
Confidence 777766666666532 22221111 11111100 0 1111 00 011112222 34567899999999999875331
Q ss_pred CeEEEEEEEeCCCCceEEEEeccEEEEccCCCChHHHHHHhCC
Q psy1040 303 KRALSVQFKDTNTNEIKTVKAKKEIILTAGAIGSPQLLMLSGV 345 (614)
Q Consensus 303 ~ra~GV~~~~~~~g~~~~v~A~k~VVlaaG~i~sp~LLl~SGi 345 (614)
.--.-+.+.+ |+..+++. |.||-|| ++.|.++-.+||.
T Consensus 229 ~~~Ypivv~n---gk~ee~r~-~~~vtc~-gl~sdr~aa~sgc 266 (453)
T KOG2665|consen 229 TFSYPIVVLN---GKGEEKRT-KNVVTCA-GLQSDRCAALSGC 266 (453)
T ss_pred CCCCceEEec---CccceeEE-eEEEEec-cccHhHHHHHhCC
Confidence 1112233333 45557777 4455554 5889999999986
No 129
>KOG2853|consensus
Probab=98.24 E-value=4e-05 Score=76.38 Aligned_cols=38 Identities=29% Similarity=0.400 Sum_probs=32.8
Q ss_pred CcccEEEECCCCchHHHHHHHhcC---CCCeEEEecCCCCC
Q psy1040 74 EEYDFVVVGGGVAGPVVAGRLVEN---PNWKVLLLEAGPDE 111 (614)
Q Consensus 74 ~~yDvIVVGsG~aG~~~A~~Lae~---~G~~VLlLEaG~~~ 111 (614)
..+||+|||+|..|+++|+-|-|. .|++|+|+|+..-.
T Consensus 85 ~~~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErddty 125 (509)
T KOG2853|consen 85 YHCDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERDDTY 125 (509)
T ss_pred cccCEEEECCCccchhhHHHHHHHhhcCCceEEEEeccCcc
Confidence 578999999999999999988653 47999999998654
No 130
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=98.23 E-value=1.4e-05 Score=84.46 Aligned_cols=58 Identities=14% Similarity=0.244 Sum_probs=46.2
Q ss_pred hhcCCCeEEEcccEEEEEEEcCCCCeEEEEEEEeCCCCceEEEEeccEEEEccCCCChHHHHHH
Q psy1040 279 KYKQDNLKVQLNAHVMKLNIDPKTKRALSVQFKDTNTNEIKTVKAKKEIILTAGAIGSPQLLML 342 (614)
Q Consensus 279 ~~~~~n~~I~~~~~V~~I~~d~~~~ra~GV~~~~~~~g~~~~v~A~k~VVlaaG~i~sp~LLl~ 342 (614)
..++.|++++.++.|+++.++ ++++++|.+.+ ++..+++|+ .||||+|+|-|..|+..
T Consensus 272 ~~~~~Gg~il~g~~V~~i~~~--~~~v~~V~t~~---g~~~~l~AD-~vVLAaGaw~S~gL~a~ 329 (419)
T TIGR03378 272 RFEQLGGVMLPGDRVLRAEFE--GNRVTRIHTRN---HRDIPLRAD-HFVLASGSFFSNGLVAE 329 (419)
T ss_pred HHHHCCCEEEECcEEEEEEee--CCeEEEEEecC---CccceEECC-EEEEccCCCcCHHHHhh
Confidence 345678999999999999988 67898877633 334579997 59999999988887654
No 131
>PRK07208 hypothetical protein; Provisional
Probab=98.23 E-value=1.4e-05 Score=87.95 Aligned_cols=38 Identities=32% Similarity=0.475 Sum_probs=34.7
Q ss_pred CcccEEEECCCCchHHHHHHHhcCCCCeEEEecCCCCCC
Q psy1040 74 EEYDFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGPDEP 112 (614)
Q Consensus 74 ~~yDvIVVGsG~aG~~~A~~Lae~~G~~VLlLEaG~~~~ 112 (614)
...||||||||.+|+++|++|+++ |++|+|+|+.+..+
T Consensus 3 ~~~~vvIiGaGisGL~aA~~L~~~-g~~v~v~E~~~~~G 40 (479)
T PRK07208 3 NKKSVVIIGAGPAGLTAAYELLKR-GYPVTVLEADPVVG 40 (479)
T ss_pred CCCcEEEECcCHHHHHHHHHHHHC-CCcEEEEecCCCCC
Confidence 357999999999999999999999 99999999987764
No 132
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=98.20 E-value=1e-05 Score=89.60 Aligned_cols=60 Identities=17% Similarity=0.281 Sum_probs=48.1
Q ss_pred cCCCeEEEcccEEEEEEEcCCCCeEEEEEEEeCCCCceEEEEeccEEEEccCCCChHHHHHHh
Q psy1040 281 KQDNLKVQLNAHVMKLNIDPKTKRALSVQFKDTNTNEIKTVKAKKEIILTAGAIGSPQLLMLS 343 (614)
Q Consensus 281 ~~~n~~I~~~~~V~~I~~d~~~~ra~GV~~~~~~~g~~~~v~A~k~VVlaaG~i~sp~LLl~S 343 (614)
+.+|+++++++.|++|.-+ ++++++|++.+..+|+..++.++ .|+++.|...++.++..+
T Consensus 398 ~~~gI~i~~~~~v~~i~~~--~g~v~~v~~~~~~~g~~~~i~~D-~v~~~~G~~p~~~~l~~~ 457 (517)
T PRK15317 398 SLPNVTIITNAQTTEVTGD--GDKVTGLTYKDRTTGEEHHLELE-GVFVQIGLVPNTEWLKGT 457 (517)
T ss_pred cCCCcEEEECcEEEEEEcC--CCcEEEEEEEECCCCcEEEEEcC-EEEEeECCccCchHHhhh
Confidence 3479999999999999765 57899999876443677789998 799999988777776543
No 133
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.20 E-value=1.1e-05 Score=85.82 Aligned_cols=34 Identities=21% Similarity=0.347 Sum_probs=32.0
Q ss_pred ccEEEECCCCchHHHHHHHhcCCCCeEEEecCCCC
Q psy1040 76 YDFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGPD 110 (614)
Q Consensus 76 yDvIVVGsG~aG~~~A~~Lae~~G~~VLlLEaG~~ 110 (614)
+||+|||||++|+++|..|++. |++|+|+|+.+.
T Consensus 2 ~dV~IvGgG~~Gl~~A~~L~~~-G~~v~l~E~~~~ 35 (374)
T PRK06617 2 SNTVILGCGLSGMLTALSFAQK-GIKTTIFESKSV 35 (374)
T ss_pred ccEEEECCCHHHHHHHHHHHcC-CCeEEEecCCCC
Confidence 7999999999999999999999 999999998753
No 134
>KOG2852|consensus
Probab=98.20 E-value=1.2e-06 Score=85.24 Aligned_cols=64 Identities=20% Similarity=0.357 Sum_probs=46.5
Q ss_pred chhhhcCCCeEEEcccEEEEEEEcCCCCeEEEEEEEeCCCCceEEEEeccEEEEccCCCChHHHHHHhCC
Q psy1040 276 LRDKYKQDNLKVQLNAHVMKLNIDPKTKRALSVQFKDTNTNEIKTVKAKKEIILTAGAIGSPQLLMLSGV 345 (614)
Q Consensus 276 L~~~~~~~n~~I~~~~~V~~I~~d~~~~ra~GV~~~~~~~g~~~~v~A~k~VVlaaG~i~sp~LLl~SGi 345 (614)
+..+.++.|++++.+ .|..|.-+ .+|+++|-..... +..+...+. .+|||+|.| |++||..-+|
T Consensus 154 ~sea~k~~~V~lv~G-kv~ev~dE--k~r~n~v~~ae~~-~ti~~~d~~-~ivvsaGPW-Tskllp~~rI 217 (380)
T KOG2852|consen 154 LSEAEKRGGVKLVFG-KVKEVSDE--KHRINSVPKAEAE-DTIIKADVH-KIVVSAGPW-TSKLLPFTRI 217 (380)
T ss_pred HHHHHhhcCeEEEEe-eeEEeecc--cccccccchhhhc-CceEEeeee-EEEEecCCC-chhhcccccc
Confidence 455678889999988 56677633 5788888765432 445567776 599999987 8888887665
No 135
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=98.19 E-value=4.8e-06 Score=88.93 Aligned_cols=58 Identities=17% Similarity=0.253 Sum_probs=44.7
Q ss_pred chhhhcCCCeEEEcccEEEEEEEcCCCCeEEEEEEEeCCCCceEEEEeccEEEEccCCCChHHH
Q psy1040 276 LRDKYKQDNLKVQLNAHVMKLNIDPKTKRALSVQFKDTNTNEIKTVKAKKEIILTAGAIGSPQL 339 (614)
Q Consensus 276 L~~~~~~~n~~I~~~~~V~~I~~d~~~~ra~GV~~~~~~~g~~~~v~A~k~VVlaaG~i~sp~L 339 (614)
|....++.|++|++++.|+++..+ ++++++|. ..+ |+...++|+ .||||+|.+.+..|
T Consensus 265 L~~~l~~~Gv~I~~g~~V~~v~~~--~~~V~~v~-~~~--g~~~~i~AD-~VVLAtGrf~s~GL 322 (422)
T PRK05329 265 LRRAFERLGGRIMPGDEVLGAEFE--GGRVTAVW-TRN--HGDIPLRAR-HFVLATGSFFSGGL 322 (422)
T ss_pred HHHHHHhCCCEEEeCCEEEEEEEe--CCEEEEEE-eeC--CceEEEECC-EEEEeCCCcccCce
Confidence 445556779999999999999887 56777766 333 666789997 79999998866654
No 136
>PRK06184 hypothetical protein; Provisional
Probab=98.19 E-value=1.3e-05 Score=88.65 Aligned_cols=35 Identities=29% Similarity=0.471 Sum_probs=33.0
Q ss_pred cccEEEECCCCchHHHHHHHhcCCCCeEEEecCCCC
Q psy1040 75 EYDFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGPD 110 (614)
Q Consensus 75 ~yDvIVVGsG~aG~~~A~~Lae~~G~~VLlLEaG~~ 110 (614)
++||+|||||++|+++|..|++. |++|+||||.+.
T Consensus 3 ~~dVlIVGaGpaGl~~A~~La~~-Gi~v~viE~~~~ 37 (502)
T PRK06184 3 TTDVLIVGAGPTGLTLAIELARR-GVSFRLIEKAPE 37 (502)
T ss_pred CCcEEEECCCHHHHHHHHHHHHC-CCcEEEEeCCCC
Confidence 58999999999999999999999 999999999754
No 137
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=98.18 E-value=1.3e-05 Score=86.10 Aligned_cols=35 Identities=34% Similarity=0.612 Sum_probs=32.0
Q ss_pred ccEEEECCCCchHHHHHHHhcC-CCCeEEEecCCCC
Q psy1040 76 YDFVVVGGGVAGPVVAGRLVEN-PNWKVLLLEAGPD 110 (614)
Q Consensus 76 yDvIVVGsG~aG~~~A~~Lae~-~G~~VLlLEaG~~ 110 (614)
|||+|||||++|+++|..|+++ +|++|+|||+.+.
T Consensus 2 ~dv~IvGaG~aGl~~A~~L~~~g~g~~v~liE~~~~ 37 (403)
T PRK07333 2 CDVVIAGGGYVGLALAVALKQAAPHLPVTVVDAAPA 37 (403)
T ss_pred CCEEEECccHHHHHHHHHHhcCCCCCEEEEEeCCCc
Confidence 8999999999999999999998 2499999999864
No 138
>PRK06847 hypothetical protein; Provisional
Probab=98.18 E-value=6.8e-06 Score=87.31 Aligned_cols=35 Identities=31% Similarity=0.455 Sum_probs=32.6
Q ss_pred cccEEEECCCCchHHHHHHHhcCCCCeEEEecCCCC
Q psy1040 75 EYDFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGPD 110 (614)
Q Consensus 75 ~yDvIVVGsG~aG~~~A~~Lae~~G~~VLlLEaG~~ 110 (614)
..||+|||||++|+++|..|++. |++|+|+|+.+.
T Consensus 4 ~~~V~IVGaG~aGl~~A~~L~~~-g~~v~v~E~~~~ 38 (375)
T PRK06847 4 VKKVLIVGGGIGGLSAAIALRRA-GIAVDLVEIDPE 38 (375)
T ss_pred cceEEEECCCHHHHHHHHHHHhC-CCCEEEEecCCC
Confidence 47999999999999999999998 999999998754
No 139
>PLN02697 lycopene epsilon cyclase
Probab=98.15 E-value=1.3e-05 Score=88.06 Aligned_cols=35 Identities=29% Similarity=0.382 Sum_probs=32.4
Q ss_pred CCcccEEEECCCCchHHHHHHHhcCCCCeEEEecCC
Q psy1040 73 QEEYDFVVVGGGVAGPVVAGRLVENPNWKVLLLEAG 108 (614)
Q Consensus 73 ~~~yDvIVVGsG~aG~~~A~~Lae~~G~~VLlLEaG 108 (614)
+..|||||||+|+||+++|.+|++. |++|+|||++
T Consensus 106 ~~~~DVvIVGaGPAGLalA~~Lak~-Gl~V~LIe~~ 140 (529)
T PLN02697 106 DGTLDLVVIGCGPAGLALAAESAKL-GLNVGLIGPD 140 (529)
T ss_pred cCcccEEEECcCHHHHHHHHHHHhC-CCcEEEecCc
Confidence 3469999999999999999999998 9999999975
No 140
>PRK11445 putative oxidoreductase; Provisional
Probab=98.13 E-value=4.1e-05 Score=80.58 Aligned_cols=33 Identities=30% Similarity=0.521 Sum_probs=30.7
Q ss_pred ccEEEECCCCchHHHHHHHhcCCCCeEEEecCCCC
Q psy1040 76 YDFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGPD 110 (614)
Q Consensus 76 yDvIVVGsG~aG~~~A~~Lae~~G~~VLlLEaG~~ 110 (614)
|||+|||+|+||+++|..|+++ .+|+|||+.+.
T Consensus 2 ~dV~IvGaGpaGl~~A~~La~~--~~V~liE~~~~ 34 (351)
T PRK11445 2 YDVAIIGLGPAGSALARLLAGK--MKVIAIDKKHQ 34 (351)
T ss_pred ceEEEECCCHHHHHHHHHHhcc--CCEEEEECCCc
Confidence 8999999999999999999985 89999998864
No 141
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=98.13 E-value=8.7e-06 Score=83.12 Aligned_cols=62 Identities=21% Similarity=0.239 Sum_probs=47.7
Q ss_pred hhhhcCCCeEEEcccEEEEEEEcCCCCeEEEEEEEeCCCCceEEEEeccEEEEccCCCChHHHHHHhC
Q psy1040 277 RDKYKQDNLKVQLNAHVMKLNIDPKTKRALSVQFKDTNTNEIKTVKAKKEIILTAGAIGSPQLLMLSG 344 (614)
Q Consensus 277 ~~~~~~~n~~I~~~~~V~~I~~d~~~~ra~GV~~~~~~~g~~~~v~A~k~VVlaaG~i~sp~LLl~SG 344 (614)
..+.+++++.+++++.+++|.-+ + +.+|.+.+.. |++..+..+ .|+++-|......++...+
T Consensus 186 ~~l~~~~~i~~~~~~~i~ei~G~--~--v~~v~l~~~~-~~~~~~~~~-gvf~~iG~~p~~~~~~~~~ 247 (305)
T COG0492 186 ERLKKNVKIEVLTNTVVKEILGD--D--VEGVVLKNVK-GEEKELPVD-GVFIAIGHLPNTELLKGLG 247 (305)
T ss_pred HHHHhcCCeEEEeCCceeEEecC--c--cceEEEEecC-CceEEEEec-eEEEecCCCCchHHHhhcc
Confidence 33445568999999999999865 3 8899998765 667788887 6999999776666766544
No 142
>PRK07588 hypothetical protein; Provisional
Probab=98.11 E-value=2.2e-05 Score=84.00 Aligned_cols=33 Identities=30% Similarity=0.547 Sum_probs=31.2
Q ss_pred cEEEECCCCchHHHHHHHhcCCCCeEEEecCCCC
Q psy1040 77 DFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGPD 110 (614)
Q Consensus 77 DvIVVGsG~aG~~~A~~Lae~~G~~VLlLEaG~~ 110 (614)
||+|||||++|+++|..|+++ |++|+|+|+.+.
T Consensus 2 ~V~IVGgG~aGl~~A~~L~~~-G~~v~v~E~~~~ 34 (391)
T PRK07588 2 KVAISGAGIAGPTLAYWLRRY-GHEPTLIERAPE 34 (391)
T ss_pred eEEEECccHHHHHHHHHHHHC-CCceEEEeCCCC
Confidence 799999999999999999998 999999999854
No 143
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=98.11 E-value=1.5e-05 Score=85.27 Aligned_cols=35 Identities=17% Similarity=0.338 Sum_probs=32.7
Q ss_pred cccEEEECCCCchHHHHHHHhcCCCCeEEEecCCCC
Q psy1040 75 EYDFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGPD 110 (614)
Q Consensus 75 ~yDvIVVGsG~aG~~~A~~Lae~~G~~VLlLEaG~~ 110 (614)
.+||+|||||++|+++|..|++. |++|+|+|+.+.
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~-G~~v~viE~~~~ 36 (390)
T TIGR02360 2 KTQVAIIGAGPSGLLLGQLLHKA-GIDNVILERQSR 36 (390)
T ss_pred CceEEEECccHHHHHHHHHHHHC-CCCEEEEECCCC
Confidence 47999999999999999999998 999999999864
No 144
>TIGR01816 sdhA_forward succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup. Succinate dehydrogenase and fumarate reductase are homologous enzymes reversible in principle but favored under different circumstances. This model represents a narrowly defined clade of the succinate dehydrogenase flavoprotein subunit as found in mitochondria, in Rickettsia, in E. coli and other Proteobacteria, and in a few other lineages. However, this model excludes all known fumarate reductases. It also excludes putative succinate dehydrogenases that appear to diverged before the split between E. coli succinate dehydrogenase and fumarate reductase.
Probab=98.10 E-value=3.2e-05 Score=86.53 Aligned_cols=58 Identities=19% Similarity=0.237 Sum_probs=47.5
Q ss_pred chhhhcCCCeEEEcccEEEEEEEcCCCCeEEEEEEEeCCCCceEEEEeccEEEEccCCCCh
Q psy1040 276 LRDKYKQDNLKVQLNAHVMKLNIDPKTKRALSVQFKDTNTNEIKTVKAKKEIILTAGAIGS 336 (614)
Q Consensus 276 L~~~~~~~n~~I~~~~~V~~I~~d~~~~ra~GV~~~~~~~g~~~~v~A~k~VVlaaG~i~s 336 (614)
|...+.+.|++|++++.|++|+.+ +|+|+||...+..+|+...|+|+ .||||+|++..
T Consensus 125 L~~~~~~~gi~i~~~~~~~~Li~~--~g~v~Ga~~~~~~~g~~~~i~Ak-aVILATGG~~~ 182 (565)
T TIGR01816 125 LYQQNLKADTSFFNEYFALDLLME--DGECRGVIAYCLETGEIHRFRAK-AVVLATGGYGR 182 (565)
T ss_pred HHHHHHhCCCEEEeccEEEEEEee--CCEEEEEEEEEcCCCcEEEEEeC-eEEECCCCccc
Confidence 334445678999999999999987 68999999865333888899994 89999999975
No 145
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=98.09 E-value=1.8e-05 Score=86.46 Aligned_cols=52 Identities=12% Similarity=0.118 Sum_probs=38.9
Q ss_pred hcCCCeEEEcccEEEEEEEcCCCCeEEEEEEEeCCCCceEEEEeccEEEEccCC
Q psy1040 280 YKQDNLKVQLNAHVMKLNIDPKTKRALSVQFKDTNTNEIKTVKAKKEIILTAGA 333 (614)
Q Consensus 280 ~~~~n~~I~~~~~V~~I~~d~~~~ra~GV~~~~~~~g~~~~v~A~k~VVlaaG~ 333 (614)
+++.|.+|++++.|++|..++ +++++||++.++.+++.+++.|+ .||+|+..
T Consensus 223 l~~~g~~i~l~~~V~~I~~~~-~~~v~~v~~~~~~~~~~~~~~a~-~VI~a~p~ 274 (453)
T TIGR02731 223 ITSRGGEVRLNSRLKEIVLNE-DGSVKHFVLADGEGQRRFEVTAD-AYVSAMPV 274 (453)
T ss_pred HHhcCCEEeCCCeeEEEEECC-CCCEEEEEEecCCCCceeEEECC-EEEEcCCH
Confidence 345689999999999998754 57899999866421233468896 69998874
No 146
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=98.07 E-value=3e-06 Score=66.08 Aligned_cols=32 Identities=22% Similarity=0.433 Sum_probs=29.0
Q ss_pred EECCCCchHHHHHHHhcCCCCeEEEecCCCCCC
Q psy1040 80 VVGGGVAGPVVAGRLVENPNWKVLLLEAGPDEP 112 (614)
Q Consensus 80 VVGsG~aG~~~A~~Lae~~G~~VLlLEaG~~~~ 112 (614)
|||||++|+++|++|+++ |++|+|+|+.+...
T Consensus 1 IiGaG~sGl~aA~~L~~~-g~~v~v~E~~~~~G 32 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKA-GYRVTVFEKNDRLG 32 (68)
T ss_dssp EES-SHHHHHHHHHHHHT-TSEEEEEESSSSSS
T ss_pred CEeeCHHHHHHHHHHHHC-CCcEEEEecCcccC
Confidence 899999999999999999 99999999997753
No 147
>PRK07538 hypothetical protein; Provisional
Probab=98.06 E-value=1.1e-05 Score=86.95 Aligned_cols=33 Identities=30% Similarity=0.632 Sum_probs=31.2
Q ss_pred cEEEECCCCchHHHHHHHhcCCCCeEEEecCCCC
Q psy1040 77 DFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGPD 110 (614)
Q Consensus 77 DvIVVGsG~aG~~~A~~Lae~~G~~VLlLEaG~~ 110 (614)
||+|||||++|+++|..|+++ |++|+|+|+.+.
T Consensus 2 dV~IVGaG~aGl~~A~~L~~~-G~~v~v~E~~~~ 34 (413)
T PRK07538 2 KVLIAGGGIGGLTLALTLHQR-GIEVVVFEAAPE 34 (413)
T ss_pred eEEEECCCHHHHHHHHHHHhC-CCcEEEEEcCCc
Confidence 899999999999999999998 999999999754
No 148
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=98.05 E-value=2.6e-05 Score=84.38 Aligned_cols=37 Identities=22% Similarity=0.350 Sum_probs=34.2
Q ss_pred CCcccEEEECCCCchHHHHHHHhcCCCCe-EEEecCCCC
Q psy1040 73 QEEYDFVVVGGGVAGPVVAGRLVENPNWK-VLLLEAGPD 110 (614)
Q Consensus 73 ~~~yDvIVVGsG~aG~~~A~~Lae~~G~~-VLlLEaG~~ 110 (614)
.+.+||+|||||.+|+++|++|.+. |.. +++|||...
T Consensus 6 ~~~~~v~IIGaG~sGlaaa~~L~~~-g~~~~~i~Ek~~~ 43 (443)
T COG2072 6 ATHTDVAIIGAGQSGLAAAYALKQA-GVPDFVIFEKRDD 43 (443)
T ss_pred CCcccEEEECCCHHHHHHHHHHHHc-CCCcEEEEEccCC
Confidence 4579999999999999999999999 988 999999966
No 149
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=98.05 E-value=5.3e-05 Score=84.77 Aligned_cols=37 Identities=30% Similarity=0.381 Sum_probs=34.0
Q ss_pred CCcccEEEECCCCchHHHHHHHhcCCCCeEEEecCCCC
Q psy1040 73 QEEYDFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGPD 110 (614)
Q Consensus 73 ~~~yDvIVVGsG~aG~~~A~~Lae~~G~~VLlLEaG~~ 110 (614)
+.++||+|||||++|+++|..|++. |.+|+|+||.+.
T Consensus 21 ~~~~dVlIVGaGpaGl~lA~~L~~~-G~~v~viE~~~~ 57 (547)
T PRK08132 21 PARHPVVVVGAGPVGLALAIDLAQQ-GVPVVLLDDDDT 57 (547)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHhC-CCcEEEEeCCCC
Confidence 3568999999999999999999998 999999999864
No 150
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=98.01 E-value=8.8e-05 Score=77.23 Aligned_cols=50 Identities=18% Similarity=0.372 Sum_probs=39.7
Q ss_pred hhcCCCeEEEcccEEEEEEEcCCCCeEEEEEEEeCCCCceEEEEeccEEEEccCCCCh
Q psy1040 279 KYKQDNLKVQLNAHVMKLNIDPKTKRALSVQFKDTNTNEIKTVKAKKEIILTAGAIGS 336 (614)
Q Consensus 279 ~~~~~n~~I~~~~~V~~I~~d~~~~ra~GV~~~~~~~g~~~~v~A~k~VVlaaG~i~s 336 (614)
.++..|++++.+++|+.|+++ ++.+.+|...++ .++.++ .||||-|--+.
T Consensus 182 ~l~~~G~ei~f~t~VeDi~~~--~~~~~~v~~~~g-----~~i~~~-~vvlA~Grsg~ 231 (486)
T COG2509 182 YLESLGGEIRFNTEVEDIEIE--DNEVLGVKLTKG-----EEIEAD-YVVLAPGRSGR 231 (486)
T ss_pred HHHhcCcEEEeeeEEEEEEec--CCceEEEEccCC-----cEEecC-EEEEccCcchH
Confidence 345678999999999999998 456778887665 378997 79999994433
No 151
>TIGR02352 thiamin_ThiO glycine oxidase ThiO. This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.
Probab=98.00 E-value=1.5e-05 Score=83.09 Aligned_cols=52 Identities=17% Similarity=0.326 Sum_probs=39.7
Q ss_pred hhhcCCCeEEEcccEEEEEEEcCCCCeEEEEEEEeCCCCceEEEEeccEEEEccCCCChHHH
Q psy1040 278 DKYKQDNLKVQLNAHVMKLNIDPKTKRALSVQFKDTNTNEIKTVKAKKEIILTAGAIGSPQL 339 (614)
Q Consensus 278 ~~~~~~n~~I~~~~~V~~I~~d~~~~ra~GV~~~~~~~g~~~~v~A~k~VVlaaG~i~sp~L 339 (614)
..+.+.|++++.+++|+.|..+ ++++++|...+ | +++|+ .||+|+|++ ++.|
T Consensus 145 ~~~~~~g~~~~~~~~v~~i~~~--~~~~~~v~~~~---g---~~~a~-~vV~a~G~~-~~~l 196 (337)
T TIGR02352 145 KALEKLGVEIIEHTEVQHIEIR--GEKVTAIVTPS---G---DVQAD-QVVLAAGAW-AGEL 196 (337)
T ss_pred HHHHHcCCEEEccceEEEEEee--CCEEEEEEcCC---C---EEECC-EEEEcCChh-hhhc
Confidence 3445678999999999999986 67788887532 2 68897 699999976 4443
No 152
>PRK06753 hypothetical protein; Provisional
Probab=97.98 E-value=2.2e-05 Score=83.41 Aligned_cols=33 Identities=24% Similarity=0.471 Sum_probs=31.5
Q ss_pred cEEEECCCCchHHHHHHHhcCCCCeEEEecCCCC
Q psy1040 77 DFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGPD 110 (614)
Q Consensus 77 DvIVVGsG~aG~~~A~~Lae~~G~~VLlLEaG~~ 110 (614)
||||||||++|+++|..|+++ |++|+|+|+.+.
T Consensus 2 ~V~IvGgG~aGl~~A~~L~~~-g~~v~v~E~~~~ 34 (373)
T PRK06753 2 KIAIIGAGIGGLTAAALLQEQ-GHEVKVFEKNES 34 (373)
T ss_pred EEEEECCCHHHHHHHHHHHhC-CCcEEEEecCCc
Confidence 799999999999999999999 999999999865
No 153
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=97.97 E-value=3.2e-05 Score=85.29 Aligned_cols=34 Identities=29% Similarity=0.434 Sum_probs=28.6
Q ss_pred cEEEECCCCchHHHHHHHhcCCCCeEEEecCCCCC
Q psy1040 77 DFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGPDE 111 (614)
Q Consensus 77 DvIVVGsG~aG~~~A~~Lae~~G~~VLlLEaG~~~ 111 (614)
-|+|||||++|+++|..|.|. |+.|+++||.+..
T Consensus 3 rVaVIGaG~sGL~a~k~l~e~-g~~~~~fE~~~~i 36 (531)
T PF00743_consen 3 RVAVIGAGPSGLAAAKNLLEE-GLEVTCFEKSDDI 36 (531)
T ss_dssp EEEEE--SHHHHHHHHHHHHT-T-EEEEEESSSSS
T ss_pred EEEEECccHHHHHHHHHHHHC-CCCCeEEecCCCC
Confidence 489999999999999999999 9999999998764
No 154
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=97.95 E-value=4.5e-05 Score=84.50 Aligned_cols=57 Identities=16% Similarity=0.318 Sum_probs=45.6
Q ss_pred CCCeEEEcccEEEEEEEcCCCCeEEEEEEEeCCCCceEEEEeccEEEEccCCCChHHHHH
Q psy1040 282 QDNLKVQLNAHVMKLNIDPKTKRALSVQFKDTNTNEIKTVKAKKEIILTAGAIGSPQLLM 341 (614)
Q Consensus 282 ~~n~~I~~~~~V~~I~~d~~~~ra~GV~~~~~~~g~~~~v~A~k~VVlaaG~i~sp~LLl 341 (614)
+.|++|++++.|+++.-+ ++++++|++.+..+|+..++.++ .||+|.|...++.+|-
T Consensus 400 ~~gV~i~~~~~v~~i~~~--~~~v~~v~~~~~~~~~~~~i~~D-~vi~a~G~~Pn~~~l~ 456 (515)
T TIGR03140 400 LPNVDILTSAQTTEIVGD--GDKVTGIRYQDRNSGEEKQLDLD-GVFVQIGLVPNTEWLK 456 (515)
T ss_pred CCCCEEEECCeeEEEEcC--CCEEEEEEEEECCCCcEEEEEcC-EEEEEeCCcCCchHHh
Confidence 469999999999999755 57888998876533666789998 7999999877777664
No 155
>PRK08163 salicylate hydroxylase; Provisional
Probab=97.95 E-value=2.6e-05 Score=83.47 Aligned_cols=35 Identities=34% Similarity=0.500 Sum_probs=32.6
Q ss_pred cccEEEECCCCchHHHHHHHhcCCCCeEEEecCCCC
Q psy1040 75 EYDFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGPD 110 (614)
Q Consensus 75 ~yDvIVVGsG~aG~~~A~~Lae~~G~~VLlLEaG~~ 110 (614)
..||+|||||++|+++|..|++. |++|+|+||.+.
T Consensus 4 ~~~V~IvGaGiaGl~~A~~L~~~-g~~v~v~Er~~~ 38 (396)
T PRK08163 4 VTPVLIVGGGIGGLAAALALARQ-GIKVKLLEQAAE 38 (396)
T ss_pred CCeEEEECCcHHHHHHHHHHHhC-CCcEEEEeeCcc
Confidence 47999999999999999999998 999999999854
No 156
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=97.93 E-value=2.6e-05 Score=85.45 Aligned_cols=60 Identities=17% Similarity=0.243 Sum_probs=43.6
Q ss_pred hhhcCCCeEEEcccEEEEEEEcCC--CC-eEEEEEEEeCCCCceEEEEeccEEEEccCCCChHHHH
Q psy1040 278 DKYKQDNLKVQLNAHVMKLNIDPK--TK-RALSVQFKDTNTNEIKTVKAKKEIILTAGAIGSPQLL 340 (614)
Q Consensus 278 ~~~~~~n~~I~~~~~V~~I~~d~~--~~-ra~GV~~~~~~~g~~~~v~A~k~VVlaaG~i~sp~LL 340 (614)
..+++.|.+|+++++|++|..++. +. ++++|++.+++ + ...+.|+ .||+|+......+||
T Consensus 227 ~~L~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~~v~~~~g~-~-~~~~~aD-~VVlA~p~~~~~~Ll 289 (474)
T TIGR02732 227 EYIEARGGKFHLRHKVREIKYEKSSDGSTRVTGLIMSKPE-G-KKVIKAD-AYVAACDVPGIKRLL 289 (474)
T ss_pred HHHHHCCCEEECCCEEEEEEEecCCCCceeEEEEEEecCC-c-ceEEECC-EEEECCChHHHHhhC
Confidence 344567899999999999998632 22 48898885431 2 2358897 699999988777765
No 157
>KOG1399|consensus
Probab=97.91 E-value=4e-05 Score=82.07 Aligned_cols=36 Identities=31% Similarity=0.466 Sum_probs=33.2
Q ss_pred cccEEEECCCCchHHHHHHHhcCCCCeEEEecCCCCC
Q psy1040 75 EYDFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGPDE 111 (614)
Q Consensus 75 ~yDvIVVGsG~aG~~~A~~Lae~~G~~VLlLEaG~~~ 111 (614)
.-+++|||||+||+++|..|.+. |..|+++||.+..
T Consensus 6 ~~~vaIIGAG~sGL~~ar~l~~~-g~~v~vfEr~~~i 41 (448)
T KOG1399|consen 6 SKDVAVIGAGPAGLAAARELLRE-GHEVVVFERTDDI 41 (448)
T ss_pred CCceEEECcchHHHHHHHHHHHC-CCCceEEEecCCc
Confidence 35899999999999999999999 9999999999764
No 158
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=97.90 E-value=8.1e-06 Score=88.53 Aligned_cols=36 Identities=28% Similarity=0.461 Sum_probs=33.5
Q ss_pred CCcccEEEECCCCchHHHHHHHhcCCCCeEEEecCCC
Q psy1040 73 QEEYDFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGP 109 (614)
Q Consensus 73 ~~~yDvIVVGsG~aG~~~A~~Lae~~G~~VLlLEaG~ 109 (614)
..+|||||||||+||+++|..||++ |++|+|||+..
T Consensus 37 ~~~~DViIVGaGPAG~~aA~~LA~~-G~~VlllEr~~ 72 (450)
T PLN00093 37 GRKLRVAVIGGGPAGACAAETLAKG-GIETFLIERKL 72 (450)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHhC-CCcEEEEecCC
Confidence 4579999999999999999999999 99999999964
No 159
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=97.89 E-value=8e-06 Score=87.27 Aligned_cols=32 Identities=38% Similarity=0.677 Sum_probs=31.1
Q ss_pred ccEEEECCCCchHHHHHHHhcCCCCeEEEecCC
Q psy1040 76 YDFVVVGGGVAGPVVAGRLVENPNWKVLLLEAG 108 (614)
Q Consensus 76 yDvIVVGsG~aG~~~A~~Lae~~G~~VLlLEaG 108 (614)
|||||||||+||+++|+.|++. |++|+|||+.
T Consensus 1 yDVvIVGaGpAG~~aA~~La~~-G~~V~l~E~~ 32 (388)
T TIGR02023 1 YDVAVIGGGPSGATAAETLARA-GIETILLERA 32 (388)
T ss_pred CeEEEECCCHHHHHHHHHHHhC-CCcEEEEECC
Confidence 7999999999999999999998 9999999997
No 160
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=97.87 E-value=1.1e-05 Score=82.44 Aligned_cols=34 Identities=50% Similarity=0.683 Sum_probs=32.5
Q ss_pred ccEEEECCCCchHHHHHHHhcCCCCeEEEecCCCC
Q psy1040 76 YDFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGPD 110 (614)
Q Consensus 76 yDvIVVGsG~aG~~~A~~Lae~~G~~VLlLEaG~~ 110 (614)
|||+|||||++|+++|..|++. |.+|+|||+...
T Consensus 1 ~dv~IiGaG~aGl~~A~~l~~~-g~~v~vie~~~~ 34 (295)
T TIGR02032 1 YDVVVVGAGPAGASAAYRLADK-GLRVLLLEKKSF 34 (295)
T ss_pred CCEEEECCCHHHHHHHHHHHHC-CCeEEEEeccCC
Confidence 7999999999999999999998 999999999865
No 161
>PRK06475 salicylate hydroxylase; Provisional
Probab=97.83 E-value=6.1e-05 Score=80.82 Aligned_cols=33 Identities=30% Similarity=0.561 Sum_probs=30.9
Q ss_pred cEEEECCCCchHHHHHHHhcCCCCeEEEecCCCC
Q psy1040 77 DFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGPD 110 (614)
Q Consensus 77 DvIVVGsG~aG~~~A~~Lae~~G~~VLlLEaG~~ 110 (614)
+++|||||++|+++|..|+++ |++|+|+|+.+.
T Consensus 4 ~V~IvGgGiaGl~~A~~L~~~-G~~V~i~E~~~~ 36 (400)
T PRK06475 4 SPLIAGAGVAGLSAALELAAR-GWAVTIIEKAQE 36 (400)
T ss_pred cEEEECCCHHHHHHHHHHHhC-CCcEEEEecCCc
Confidence 699999999999999999998 999999999754
No 162
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=97.82 E-value=0.00022 Score=85.00 Aligned_cols=62 Identities=15% Similarity=0.122 Sum_probs=48.4
Q ss_pred hhcCCCeEEEcccEEEEEEEcCCCCeEEEEEEEeCCCCceEEEEeccEEEEccCCCChHHHHHHhCC
Q psy1040 279 KYKQDNLKVQLNAHVMKLNIDPKTKRALSVQFKDTNTNEIKTVKAKKEIILTAGAIGSPQLLMLSGV 345 (614)
Q Consensus 279 ~~~~~n~~I~~~~~V~~I~~d~~~~ra~GV~~~~~~~g~~~~v~A~k~VVlaaG~i~sp~LLl~SGi 345 (614)
.+++.|++|++++.|+++.- ++++.+|++.... |...++.++ .|+++.|...+..|+...|.
T Consensus 360 ~L~~~GV~i~~~~~v~~i~g---~~~v~~V~l~~~~-g~~~~i~~D-~V~va~G~~Pnt~L~~~lg~ 421 (985)
T TIGR01372 360 EARELGIEVLTGHVVAATEG---GKRVSGVAVARNG-GAGQRLEAD-ALAVSGGWTPVVHLFSQRGG 421 (985)
T ss_pred HHHHcCCEEEcCCeEEEEec---CCcEEEEEEEecC-CceEEEECC-EEEEcCCcCchhHHHHhcCC
Confidence 34677999999999999864 3578888887421 555689998 79999999888888877764
No 163
>PTZ00058 glutathione reductase; Provisional
Probab=97.81 E-value=2.8e-05 Score=86.38 Aligned_cols=35 Identities=40% Similarity=0.632 Sum_probs=33.1
Q ss_pred CCcccEEEECCCCchHHHHHHHhcCCCCeEEEecCC
Q psy1040 73 QEEYDFVVVGGGVAGPVVAGRLVENPNWKVLLLEAG 108 (614)
Q Consensus 73 ~~~yDvIVVGsG~aG~~~A~~Lae~~G~~VLlLEaG 108 (614)
+.+||+||||||+||..+|.++++. |++|+|+|++
T Consensus 46 ~~~yDvvVIG~G~aG~~aA~~aa~~-G~~ValIEk~ 80 (561)
T PTZ00058 46 RMVYDLIVIGGGSGGMAAARRAARN-KAKVALVEKD 80 (561)
T ss_pred CccccEEEECcCHHHHHHHHHHHHc-CCeEEEEecc
Confidence 4679999999999999999999999 9999999986
No 164
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.81 E-value=1.7e-05 Score=86.88 Aligned_cols=33 Identities=36% Similarity=0.482 Sum_probs=31.4
Q ss_pred cccEEEECCCCchHHHHHHHhcCCCCeEEEecCC
Q psy1040 75 EYDFVVVGGGVAGPVVAGRLVENPNWKVLLLEAG 108 (614)
Q Consensus 75 ~yDvIVVGsG~aG~~~A~~Lae~~G~~VLlLEaG 108 (614)
+||+||||+|+||+.+|.+|++. |++|+|+|+.
T Consensus 3 ~~DvvVIG~GpaG~~AA~~aa~~-G~~V~liE~~ 35 (466)
T PRK06115 3 SYDVVIIGGGPGGYNAAIRAGQL-GLKVACVEGR 35 (466)
T ss_pred cccEEEECCCHHHHHHHHHHHhC-CCeEEEEecC
Confidence 49999999999999999999999 9999999974
No 165
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=97.79 E-value=1.8e-05 Score=86.55 Aligned_cols=37 Identities=30% Similarity=0.404 Sum_probs=33.8
Q ss_pred CCcccEEEECCCCchHHHHHHHhcCCCCeEEEecCCCC
Q psy1040 73 QEEYDFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGPD 110 (614)
Q Consensus 73 ~~~yDvIVVGsG~aG~~~A~~Lae~~G~~VLlLEaG~~ 110 (614)
...||+||||||++|+.+|.+|++. |++|+|+|+++.
T Consensus 3 ~~~yDvvVIGaGpaG~~aA~~la~~-G~~v~liE~~~~ 39 (461)
T PRK05249 3 MYDYDLVVIGSGPAGEGAAMQAAKL-GKRVAVIERYRN 39 (461)
T ss_pred CccccEEEECCCHHHHHHHHHHHhC-CCEEEEEecccc
Confidence 3469999999999999999999999 999999998754
No 166
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=97.77 E-value=0.00021 Score=78.39 Aligned_cols=38 Identities=29% Similarity=0.365 Sum_probs=34.4
Q ss_pred CCcccEEEECCCCchHHHHHHHhcCCCCeEEEecCCCCC
Q psy1040 73 QEEYDFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGPDE 111 (614)
Q Consensus 73 ~~~yDvIVVGsG~aG~~~A~~Lae~~G~~VLlLEaG~~~ 111 (614)
...+||+|||+|++|+.+|.+|++. |++|+|+|+.+..
T Consensus 141 ~~~~~VvIIGaGpAGl~aA~~l~~~-G~~V~vie~~~~~ 178 (471)
T PRK12810 141 RTGKKVAVVGSGPAGLAAADQLARA-GHKVTVFERADRI 178 (471)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHhC-CCcEEEEecCCCC
Confidence 3457999999999999999999998 9999999998764
No 167
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=97.76 E-value=0.0017 Score=70.81 Aligned_cols=38 Identities=26% Similarity=0.340 Sum_probs=34.2
Q ss_pred CCcccEEEECCCCchHHHHHHHhcCCCCeEEEecCCCCC
Q psy1040 73 QEEYDFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGPDE 111 (614)
Q Consensus 73 ~~~yDvIVVGsG~aG~~~A~~Lae~~G~~VLlLEaG~~~ 111 (614)
...+|++|||+|++|+.+|..|++. |++|+|+|+.+..
T Consensus 131 ~~~~~V~IIG~G~aGl~aA~~l~~~-G~~V~vie~~~~~ 168 (449)
T TIGR01316 131 STHKKVAVIGAGPAGLACASELAKA-GHSVTVFEALHKP 168 (449)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHC-CCcEEEEecCCCC
Confidence 3468999999999999999999998 9999999997653
No 168
>KOG2311|consensus
Probab=97.76 E-value=5.9e-05 Score=78.34 Aligned_cols=35 Identities=37% Similarity=0.516 Sum_probs=31.3
Q ss_pred CCcccEEEECCCCchHHHHHHHhcCCCCeEEEecCC
Q psy1040 73 QEEYDFVVVGGGVAGPVVAGRLVENPNWKVLLLEAG 108 (614)
Q Consensus 73 ~~~yDvIVVGsG~aG~~~A~~Lae~~G~~VLlLEaG 108 (614)
...|||||||||.|||-+|...|+- |.+.+||-..
T Consensus 26 ~~~~dVvVIGgGHAG~EAAaAaaR~-Ga~TlLlT~~ 60 (679)
T KOG2311|consen 26 TSTYDVVVIGGGHAGCEAAAAAARL-GARTLLLTHN 60 (679)
T ss_pred CCcccEEEECCCccchHHHHHHHhc-CCceEEeecc
Confidence 4579999999999999999999998 9999998644
No 169
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=97.75 E-value=2.1e-05 Score=84.14 Aligned_cols=37 Identities=30% Similarity=0.556 Sum_probs=33.9
Q ss_pred CCcccEEEECCCCchHHHHHHHhcCCCCeEEEecCCCC
Q psy1040 73 QEEYDFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGPD 110 (614)
Q Consensus 73 ~~~yDvIVVGsG~aG~~~A~~Lae~~G~~VLlLEaG~~ 110 (614)
..+|||||||||++|+++|..|+++ |++|+|||+.+.
T Consensus 3 ~~~~dViIvGgG~aGl~~A~~La~~-G~~V~liE~~~~ 39 (391)
T PRK08020 3 NQPTDIAIVGGGMVGAALALGLAQH-GFSVAVLEHAAP 39 (391)
T ss_pred cccccEEEECcCHHHHHHHHHHhcC-CCEEEEEcCCCC
Confidence 3569999999999999999999998 999999999753
No 170
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=97.75 E-value=2.5e-05 Score=77.51 Aligned_cols=36 Identities=28% Similarity=0.551 Sum_probs=33.7
Q ss_pred ccEEEECCCCchHHHHHHHhcCCCCeEEEecCCCCCC
Q psy1040 76 YDFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGPDEP 112 (614)
Q Consensus 76 yDvIVVGsG~aG~~~A~~Lae~~G~~VLlLEaG~~~~ 112 (614)
||+||||||.+|+++|..|++. |++||||||-+..+
T Consensus 2 fd~lIVGaGlsG~V~A~~a~~~-gk~VLIvekR~HIG 37 (374)
T COG0562 2 FDYLIVGAGLSGAVIAEVAAQL-GKRVLIVEKRNHIG 37 (374)
T ss_pred CcEEEECCchhHHHHHHHHHHc-CCEEEEEeccccCC
Confidence 8999999999999999999988 99999999988764
No 171
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=97.75 E-value=1.8e-05 Score=86.08 Aligned_cols=34 Identities=44% Similarity=0.713 Sum_probs=32.2
Q ss_pred cccEEEECCCCchHHHHHHHhcCCCCeEEEecCCC
Q psy1040 75 EYDFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGP 109 (614)
Q Consensus 75 ~yDvIVVGsG~aG~~~A~~Lae~~G~~VLlLEaG~ 109 (614)
+||+||||||+||..+|.+|++. |++|+|+|++.
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~-G~~V~liE~~~ 35 (450)
T TIGR01421 2 HYDYLVIGGGSGGIASARRAAEH-GAKALLVEAKK 35 (450)
T ss_pred CCCEEEECcCHHHHHHHHHHHHC-CCcEEEecccc
Confidence 59999999999999999999999 99999999863
No 172
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=97.75 E-value=0.00033 Score=79.93 Aligned_cols=37 Identities=24% Similarity=0.398 Sum_probs=33.6
Q ss_pred CcccEEEECCCCchHHHHHHHhcCCCCeEEEecCCCCC
Q psy1040 74 EEYDFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGPDE 111 (614)
Q Consensus 74 ~~yDvIVVGsG~aG~~~A~~Lae~~G~~VLlLEaG~~~ 111 (614)
...+|+|||||+||+++|..|++. |++|+|+|+.+..
T Consensus 326 ~~~~VaIIGaGpAGLsaA~~L~~~-G~~V~V~E~~~~~ 362 (654)
T PRK12769 326 SDKRVAIIGAGPAGLACADVLARN-GVAVTVYDRHPEI 362 (654)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC-CCeEEEEecCCCC
Confidence 457999999999999999999998 9999999997653
No 173
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=97.74 E-value=2.3e-05 Score=85.27 Aligned_cols=35 Identities=34% Similarity=0.634 Sum_probs=32.9
Q ss_pred cccEEEECCCCchHHHHHHHhcCCCCeEEEecCCCC
Q psy1040 75 EYDFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGPD 110 (614)
Q Consensus 75 ~yDvIVVGsG~aG~~~A~~Lae~~G~~VLlLEaG~~ 110 (614)
+||+||||||+||+.+|.+|++. |++|+|+|+++.
T Consensus 3 ~yDvvVIGgGpaGl~aA~~la~~-g~~V~lie~~~~ 37 (441)
T PRK08010 3 KYQAVIIGFGKAGKTLAVTLAKA-GWRVALIEQSNA 37 (441)
T ss_pred cCCEEEECCCHhHHHHHHHHHHC-CCeEEEEcCCCC
Confidence 59999999999999999999998 999999999753
No 174
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=97.74 E-value=2.4e-05 Score=83.55 Aligned_cols=36 Identities=36% Similarity=0.596 Sum_probs=33.7
Q ss_pred CcccEEEECCCCchHHHHHHHhcCCCCeEEEecCCCC
Q psy1040 74 EEYDFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGPD 110 (614)
Q Consensus 74 ~~yDvIVVGsG~aG~~~A~~Lae~~G~~VLlLEaG~~ 110 (614)
..|||||||||++|+++|+.|++. |++|+|+|+++.
T Consensus 4 ~~~dv~IvGgG~aGl~~A~~L~~~-G~~v~v~E~~~~ 39 (388)
T PRK07608 4 MKFDVVVVGGGLVGASLALALAQS-GLRVALLAPRAP 39 (388)
T ss_pred ccCCEEEECcCHHHHHHHHHHHhC-CCeEEEEecCCC
Confidence 368999999999999999999998 999999999866
No 175
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=97.72 E-value=2.7e-05 Score=83.31 Aligned_cols=36 Identities=36% Similarity=0.510 Sum_probs=33.6
Q ss_pred CcccEEEECCCCchHHHHHHHhcCCCCeEEEecCCCC
Q psy1040 74 EEYDFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGPD 110 (614)
Q Consensus 74 ~~yDvIVVGsG~aG~~~A~~Lae~~G~~VLlLEaG~~ 110 (614)
..+||+|||||++|+++|+.|+++ |++|+|||+.+.
T Consensus 5 ~~~dV~IvGaG~aGl~~A~~La~~-G~~v~liE~~~~ 40 (392)
T PRK08773 5 SRRDAVIVGGGVVGAACALALADA-GLSVALVEGREP 40 (392)
T ss_pred CCCCEEEECcCHHHHHHHHHHhcC-CCEEEEEeCCCC
Confidence 469999999999999999999999 999999999864
No 176
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=97.72 E-value=2.3e-05 Score=83.95 Aligned_cols=33 Identities=39% Similarity=0.587 Sum_probs=31.2
Q ss_pred ccEEEECCCCchHHHHHHHhcCCCCeEEEecCCC
Q psy1040 76 YDFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGP 109 (614)
Q Consensus 76 yDvIVVGsG~aG~~~A~~Lae~~G~~VLlLEaG~ 109 (614)
+||||||||+||+++|..||++ |++|+|||+..
T Consensus 1 ~~VvIVGaGPAG~~aA~~la~~-G~~V~llE~~~ 33 (398)
T TIGR02028 1 LRVAVVGGGPAGASAAETLASA-GIQTFLLERKP 33 (398)
T ss_pred CeEEEECCcHHHHHHHHHHHhC-CCcEEEEecCC
Confidence 6999999999999999999999 99999999863
No 177
>PRK06116 glutathione reductase; Validated
Probab=97.71 E-value=2.6e-05 Score=85.01 Aligned_cols=34 Identities=41% Similarity=0.660 Sum_probs=32.3
Q ss_pred CcccEEEECCCCchHHHHHHHhcCCCCeEEEecCC
Q psy1040 74 EEYDFVVVGGGVAGPVVAGRLVENPNWKVLLLEAG 108 (614)
Q Consensus 74 ~~yDvIVVGsG~aG~~~A~~Lae~~G~~VLlLEaG 108 (614)
.+||+||||||+||+.+|.+|++. |++|+|+|++
T Consensus 3 ~~~DvvVIG~GpaG~~aA~~~a~~-G~~V~liE~~ 36 (450)
T PRK06116 3 KDYDLIVIGGGSGGIASANRAAMY-GAKVALIEAK 36 (450)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHC-CCeEEEEecc
Confidence 369999999999999999999999 9999999986
No 178
>PRK09126 hypothetical protein; Provisional
Probab=97.71 E-value=2.4e-05 Score=83.64 Aligned_cols=35 Identities=43% Similarity=0.524 Sum_probs=33.4
Q ss_pred cccEEEECCCCchHHHHHHHhcCCCCeEEEecCCCC
Q psy1040 75 EYDFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGPD 110 (614)
Q Consensus 75 ~yDvIVVGsG~aG~~~A~~Lae~~G~~VLlLEaG~~ 110 (614)
+|||||||||++|+++|..|+++ |++|+|+|+.+.
T Consensus 3 ~~dviIvGgG~aGl~~A~~L~~~-G~~v~v~E~~~~ 37 (392)
T PRK09126 3 HSDIVVVGAGPAGLSFARSLAGS-GLKVTLIERQPL 37 (392)
T ss_pred cccEEEECcCHHHHHHHHHHHhC-CCcEEEEeCCCc
Confidence 58999999999999999999999 999999999975
No 179
>PRK08013 oxidoreductase; Provisional
Probab=97.71 E-value=2.7e-05 Score=83.56 Aligned_cols=35 Identities=34% Similarity=0.497 Sum_probs=33.2
Q ss_pred cccEEEECCCCchHHHHHHHhcCCCCeEEEecCCCC
Q psy1040 75 EYDFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGPD 110 (614)
Q Consensus 75 ~yDvIVVGsG~aG~~~A~~Lae~~G~~VLlLEaG~~ 110 (614)
+|||||||||++|+++|..|++. |++|+|||+.+.
T Consensus 3 ~~dV~IvGaGpaGl~~A~~La~~-G~~v~viE~~~~ 37 (400)
T PRK08013 3 SVDVVIAGGGMVGLAVACGLQGS-GLRVAVLEQRVP 37 (400)
T ss_pred cCCEEEECcCHHHHHHHHHHhhC-CCEEEEEeCCCC
Confidence 48999999999999999999998 999999999865
No 180
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=97.70 E-value=2.4e-05 Score=85.10 Aligned_cols=33 Identities=30% Similarity=0.465 Sum_probs=31.7
Q ss_pred cccEEEECCCCchHHHHHHHhcCCCCeEEEecCC
Q psy1040 75 EYDFVVVGGGVAGPVVAGRLVENPNWKVLLLEAG 108 (614)
Q Consensus 75 ~yDvIVVGsG~aG~~~A~~Lae~~G~~VLlLEaG 108 (614)
+||+||||||+||..+|.+|++. |++|+|+|++
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~-G~~V~lie~~ 34 (446)
T TIGR01424 2 DYDLFVIGAGSGGVRAARLAANH-GAKVAIAEEP 34 (446)
T ss_pred cccEEEECCCHHHHHHHHHHHhC-CCcEEEEecC
Confidence 59999999999999999999999 9999999985
No 181
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.70 E-value=3.2e-05 Score=84.75 Aligned_cols=36 Identities=25% Similarity=0.242 Sum_probs=33.1
Q ss_pred CcccEEEECCCCchHHHHHHHhcCCCCeEEEecCCCC
Q psy1040 74 EEYDFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGPD 110 (614)
Q Consensus 74 ~~yDvIVVGsG~aG~~~A~~Lae~~G~~VLlLEaG~~ 110 (614)
.+||+||||+|++|..+|.+|++. |++|+|+|+.+.
T Consensus 3 ~~~DvvVIG~GpaG~~aA~~aa~~-G~~V~lie~~~~ 38 (471)
T PRK06467 3 IKTQVVVLGAGPAGYSAAFRAADL-GLETVCVERYST 38 (471)
T ss_pred ccceEEEECCCHHHHHHHHHHHHC-CCcEEEEecCCc
Confidence 359999999999999999999999 999999998643
No 182
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=97.70 E-value=6.8e-05 Score=81.49 Aligned_cols=51 Identities=25% Similarity=0.421 Sum_probs=36.2
Q ss_pred ccchhhhcCCCeEEEcccEEEEEEEcCCCCeEEEEEEEeCCCCceEEEEeccEEEEccC
Q psy1040 274 MFLRDKYKQDNLKVQLNAHVMKLNIDPKTKRALSVQFKDTNTNEIKTVKAKKEIILTAG 332 (614)
Q Consensus 274 ~~L~~~~~~~n~~I~~~~~V~~I~~d~~~~ra~GV~~~~~~~g~~~~v~A~k~VVlaaG 332 (614)
.+|...+.+.|++++.+ .|+++.+++ ++.+++|+..++ .+++|+ -||=|+|
T Consensus 158 ~~L~~~A~~~Gv~~~~g-~V~~v~~~~-~g~i~~v~~~~g-----~~i~ad-~~IDASG 208 (454)
T PF04820_consen 158 QFLRRHAEERGVEVIEG-TVVDVELDE-DGRITAVRLDDG-----RTIEAD-FFIDASG 208 (454)
T ss_dssp HHHHHHHHHTT-EEEET--EEEEEE-T-TSEEEEEEETTS-----EEEEES-EEEE-SG
T ss_pred HHHHHHHhcCCCEEEeC-EEEEEEEcC-CCCEEEEEECCC-----CEEEEe-EEEECCC
Confidence 45666666679999988 488888876 689999987654 478996 7888888
No 183
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.69 E-value=2.8e-05 Score=85.14 Aligned_cols=36 Identities=36% Similarity=0.490 Sum_probs=33.6
Q ss_pred CCcccEEEECCCCchHHHHHHHhcCCCCeEEEecCCC
Q psy1040 73 QEEYDFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGP 109 (614)
Q Consensus 73 ~~~yDvIVVGsG~aG~~~A~~Lae~~G~~VLlLEaG~ 109 (614)
..+||+||||||+||+.+|.+|++. |++|+|+|++.
T Consensus 2 ~~~yDvvVIGaGpaG~~aA~~aa~~-G~~V~liE~~~ 37 (462)
T PRK06416 2 AFEYDVIVIGAGPGGYVAAIRAAQL-GLKVAIVEKEK 37 (462)
T ss_pred CccccEEEECCCHHHHHHHHHHHHC-CCcEEEEeccc
Confidence 4579999999999999999999999 99999999875
No 184
>PLN02463 lycopene beta cyclase
Probab=97.68 E-value=3.9e-05 Score=82.90 Aligned_cols=37 Identities=38% Similarity=0.539 Sum_probs=33.5
Q ss_pred CCcccEEEECCCCchHHHHHHHhcCCCCeEEEecCCCC
Q psy1040 73 QEEYDFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGPD 110 (614)
Q Consensus 73 ~~~yDvIVVGsG~aG~~~A~~Lae~~G~~VLlLEaG~~ 110 (614)
...||+||||||+||+++|..|+++ |++|+|||+.+.
T Consensus 26 ~~~~DVvIVGaGpAGLalA~~La~~-Gl~V~liE~~~~ 62 (447)
T PLN02463 26 SRVVDLVVVGGGPAGLAVAQQVSEA-GLSVCCIDPSPL 62 (447)
T ss_pred ccCceEEEECCCHHHHHHHHHHHHC-CCeEEEeccCcc
Confidence 3469999999999999999999998 999999998643
No 185
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=97.68 E-value=3.2e-05 Score=83.11 Aligned_cols=34 Identities=38% Similarity=0.698 Sum_probs=32.4
Q ss_pred cccEEEECCCCchHHHHHHHhcCCCCeEEEecCCC
Q psy1040 75 EYDFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGP 109 (614)
Q Consensus 75 ~yDvIVVGsG~aG~~~A~~Lae~~G~~VLlLEaG~ 109 (614)
+|||+|||||++|+++|..|+++ |++|+|+|+.+
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~-G~~v~viE~~~ 35 (405)
T PRK05714 2 RADLLIVGAGMVGSALALALQGS-GLEVLLLDGGP 35 (405)
T ss_pred CccEEEECccHHHHHHHHHHhcC-CCEEEEEcCCC
Confidence 48999999999999999999998 99999999985
No 186
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=97.67 E-value=3.7e-05 Score=82.08 Aligned_cols=37 Identities=35% Similarity=0.484 Sum_probs=33.8
Q ss_pred CCcccEEEECCCCchHHHHHHHhcCCCCeEEEecCCCC
Q psy1040 73 QEEYDFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGPD 110 (614)
Q Consensus 73 ~~~yDvIVVGsG~aG~~~A~~Lae~~G~~VLlLEaG~~ 110 (614)
...|||||||+|++|+++|..|+++ |++|+|||+.+.
T Consensus 5 ~~~~dViIVGaG~~Gl~~A~~L~~~-G~~v~liE~~~~ 41 (388)
T PRK07494 5 KEHTDIAVIGGGPAGLAAAIALARA-GASVALVAPEPP 41 (388)
T ss_pred CCCCCEEEECcCHHHHHHHHHHhcC-CCeEEEEeCCCC
Confidence 3469999999999999999999998 999999999754
No 187
>PRK06370 mercuric reductase; Validated
Probab=97.65 E-value=3.8e-05 Score=84.07 Aligned_cols=36 Identities=42% Similarity=0.668 Sum_probs=33.3
Q ss_pred CCcccEEEECCCCchHHHHHHHhcCCCCeEEEecCCC
Q psy1040 73 QEEYDFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGP 109 (614)
Q Consensus 73 ~~~yDvIVVGsG~aG~~~A~~Lae~~G~~VLlLEaG~ 109 (614)
..+||+||||||+||..+|.+|++. |++|+|+|++.
T Consensus 3 ~~~~DvvVIG~GpaG~~aA~~aa~~-G~~v~lie~~~ 38 (463)
T PRK06370 3 AQRYDAIVIGAGQAGPPLAARAAGL-GMKVALIERGL 38 (463)
T ss_pred CccccEEEECCCHHHHHHHHHHHhC-CCeEEEEecCc
Confidence 3469999999999999999999999 99999999864
No 188
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=97.64 E-value=3.8e-05 Score=83.46 Aligned_cols=35 Identities=37% Similarity=0.584 Sum_probs=32.9
Q ss_pred cccEEEECCCCchHHHHHHHhcCCCCeEEEecCCCC
Q psy1040 75 EYDFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGPD 110 (614)
Q Consensus 75 ~yDvIVVGsG~aG~~~A~~Lae~~G~~VLlLEaG~~ 110 (614)
+||+||||||+||+.+|.+|++. |++|+|+|+++.
T Consensus 3 ~~dvvVIG~GpaG~~aA~~l~~~-g~~V~liE~~~~ 37 (438)
T PRK07251 3 TYDLIVIGFGKAGKTLAAKLASA-GKKVALVEESKA 37 (438)
T ss_pred ccCEEEECCCHHHHHHHHHHHhC-CCEEEEEecCCc
Confidence 59999999999999999999998 999999999853
No 189
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=97.64 E-value=0.00072 Score=79.66 Aligned_cols=37 Identities=30% Similarity=0.287 Sum_probs=33.8
Q ss_pred CcccEEEECCCCchHHHHHHHhcCCCCeEEEecCCCCC
Q psy1040 74 EEYDFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGPDE 111 (614)
Q Consensus 74 ~~yDvIVVGsG~aG~~~A~~Lae~~G~~VLlLEaG~~~ 111 (614)
...+|+|||||+||+++|..|++. |++|+|+|+.+..
T Consensus 305 ~gkkVaVIGsGPAGLsaA~~Lar~-G~~VtVfE~~~~~ 341 (944)
T PRK12779 305 VKPPIAVVGSGPSGLINAYLLAVE-GFPVTVFEAFHDL 341 (944)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHC-CCeEEEEeeCCCC
Confidence 357899999999999999999999 9999999998654
No 190
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=97.64 E-value=4.1e-05 Score=80.53 Aligned_cols=36 Identities=33% Similarity=0.601 Sum_probs=33.0
Q ss_pred ccEEEECCCCchHHHHHHHhcCCCCeEEEecCCCCCC
Q psy1040 76 YDFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGPDEP 112 (614)
Q Consensus 76 yDvIVVGsG~aG~~~A~~Lae~~G~~VLlLEaG~~~~ 112 (614)
||++|||||.+|+++|.+|++. |.+|+|||+.+..+
T Consensus 2 ~DvvIIGaG~aGlsaA~~La~~-G~~V~viEk~~~iG 37 (377)
T TIGR00031 2 FDYIIVGAGLSGIVLANILAQL-NKRVLVVEKRNHIG 37 (377)
T ss_pred CcEEEECCCHHHHHHHHHHHhC-CCeEEEEecCCCCC
Confidence 7999999999999999999998 99999999976543
No 191
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.62 E-value=0.00027 Score=70.81 Aligned_cols=60 Identities=13% Similarity=0.265 Sum_probs=51.7
Q ss_pred cCCCeEEEcccEEEEEEEcCCCCeEEEEEEEeCCCCceEEEEeccEEEEccCCCChHHHHHHh
Q psy1040 281 KQDNLKVQLNAHVMKLNIDPKTKRALSVQFKDTNTNEIKTVKAKKEIILTAGAIGSPQLLMLS 343 (614)
Q Consensus 281 ~~~n~~I~~~~~V~~I~~d~~~~ra~GV~~~~~~~g~~~~v~A~k~VVlaaG~i~sp~LLl~S 343 (614)
.-+|++|++|+.-+.|.=| +.+|+|++|++..+|+.+.+.-. .|.+--|-+.+..+|.-+
T Consensus 401 sl~Nv~ii~na~Ttei~Gd--g~kV~Gl~Y~dr~sge~~~l~Le-GvFVqIGL~PNT~WLkg~ 460 (520)
T COG3634 401 SLPNVTIITNAQTTEVKGD--GDKVTGLEYRDRVSGEEHHLELE-GVFVQIGLLPNTEWLKGA 460 (520)
T ss_pred cCCCcEEEecceeeEEecC--CceecceEEEeccCCceeEEEee-eeEEEEecccChhHhhch
Confidence 4589999999999999877 78999999998777888888886 699999988888888744
No 192
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=97.62 E-value=4.3e-05 Score=83.85 Aligned_cols=34 Identities=44% Similarity=0.672 Sum_probs=32.4
Q ss_pred CcccEEEECCCCchHHHHHHHhcCCCCeEEEecCC
Q psy1040 74 EEYDFVVVGGGVAGPVVAGRLVENPNWKVLLLEAG 108 (614)
Q Consensus 74 ~~yDvIVVGsG~aG~~~A~~Lae~~G~~VLlLEaG 108 (614)
.+||+||||||+||+.+|.+|++. |++|+|+|++
T Consensus 3 ~~ydvvVIG~GpaG~~aA~~aa~~-G~~v~lie~~ 36 (472)
T PRK05976 3 KEYDLVIIGGGPGGYVAAIRAGQL-GLKTALVEKG 36 (472)
T ss_pred ccccEEEECCCHHHHHHHHHHHhC-CCeEEEEEcc
Confidence 469999999999999999999998 9999999986
No 193
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=97.61 E-value=4.2e-05 Score=81.56 Aligned_cols=34 Identities=35% Similarity=0.657 Sum_probs=32.1
Q ss_pred cccEEEECCCCchHHHHHHHhcCCCCeEEEecCCC
Q psy1040 75 EYDFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGP 109 (614)
Q Consensus 75 ~yDvIVVGsG~aG~~~A~~Lae~~G~~VLlLEaG~ 109 (614)
+|||+|||||++|+++|..|++. |++|+|+|+.+
T Consensus 3 ~~dv~IvGgG~aGl~~A~~L~~~-G~~v~l~E~~~ 36 (384)
T PRK08849 3 KYDIAVVGGGMVGAATALGFAKQ-GRSVAVIEGGE 36 (384)
T ss_pred cccEEEECcCHHHHHHHHHHHhC-CCcEEEEcCCC
Confidence 48999999999999999999998 99999999874
No 194
>PRK13748 putative mercuric reductase; Provisional
Probab=97.61 E-value=5e-05 Score=85.31 Aligned_cols=34 Identities=32% Similarity=0.425 Sum_probs=32.4
Q ss_pred CcccEEEECCCCchHHHHHHHhcCCCCeEEEecCC
Q psy1040 74 EEYDFVVVGGGVAGPVVAGRLVENPNWKVLLLEAG 108 (614)
Q Consensus 74 ~~yDvIVVGsG~aG~~~A~~Lae~~G~~VLlLEaG 108 (614)
.+||+||||+|++|+.+|.+|++. |.+|+|+|++
T Consensus 97 ~~~DvvVIG~GpaG~~aA~~~~~~-G~~v~lie~~ 130 (561)
T PRK13748 97 RPLHVAVIGSGGAAMAAALKAVEQ-GARVTLIERG 130 (561)
T ss_pred CCCCEEEECcCHHHHHHHHHHHhC-CCeEEEEecC
Confidence 469999999999999999999999 9999999987
No 195
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=97.59 E-value=5.5e-05 Score=82.78 Aligned_cols=33 Identities=45% Similarity=0.675 Sum_probs=31.5
Q ss_pred cccEEEECCCCchHHHHHHHhcCCCCeEEEecCC
Q psy1040 75 EYDFVVVGGGVAGPVVAGRLVENPNWKVLLLEAG 108 (614)
Q Consensus 75 ~yDvIVVGsG~aG~~~A~~Lae~~G~~VLlLEaG 108 (614)
+||+||||||++|+.+|.+|++. |++|+|||++
T Consensus 3 ~yDvvIIG~G~aGl~aA~~l~~~-g~~v~lie~~ 35 (460)
T PRK06292 3 KYDVIVIGAGPAGYVAARRAAKL-GKKVALIEKG 35 (460)
T ss_pred cccEEEECCCHHHHHHHHHHHHC-CCeEEEEeCC
Confidence 59999999999999999999998 9999999983
No 196
>PLN02546 glutathione reductase
Probab=97.57 E-value=5.6e-05 Score=83.98 Aligned_cols=33 Identities=15% Similarity=0.225 Sum_probs=31.4
Q ss_pred CcccEEEECCCCchHHHHHHHhcCCCCeEEEecC
Q psy1040 74 EEYDFVVVGGGVAGPVVAGRLVENPNWKVLLLEA 107 (614)
Q Consensus 74 ~~yDvIVVGsG~aG~~~A~~Lae~~G~~VLlLEa 107 (614)
.+||+||||+|+||..+|.+|++. |+||+|+|+
T Consensus 78 ~~yDvvVIG~GpaG~~aA~~aa~~-G~~V~liE~ 110 (558)
T PLN02546 78 YDFDLFTIGAGSGGVRASRFASNF-GASAAVCEL 110 (558)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHC-CCeEEEEec
Confidence 469999999999999999999999 999999996
No 197
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=97.57 E-value=6.9e-05 Score=82.17 Aligned_cols=35 Identities=20% Similarity=0.351 Sum_probs=31.6
Q ss_pred CcccEEEECCCCchHHHHHHHhcCCCCeEEEecCC
Q psy1040 74 EEYDFVVVGGGVAGPVVAGRLVENPNWKVLLLEAG 108 (614)
Q Consensus 74 ~~yDvIVVGsG~aG~~~A~~Lae~~G~~VLlLEaG 108 (614)
.+||+||||+|++|..+|.++++..|.||+|+|++
T Consensus 2 ~~~DviVIG~G~~G~~aA~~aa~~~g~~V~lie~~ 36 (486)
T TIGR01423 2 KAFDLVVIGAGSGGLEAGWNAATLYKKRVAVIDVQ 36 (486)
T ss_pred CccCEEEECCChHHHHHHHHHHHhcCCEEEEEecc
Confidence 46999999999999999999999428999999985
No 198
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=97.56 E-value=5.9e-05 Score=81.92 Aligned_cols=34 Identities=44% Similarity=0.708 Sum_probs=31.5
Q ss_pred ccEEEECCCCchHHHHHHHhc----CCCCeEEEecCCCC
Q psy1040 76 YDFVVVGGGVAGPVVAGRLVE----NPNWKVLLLEAGPD 110 (614)
Q Consensus 76 yDvIVVGsG~aG~~~A~~Lae----~~G~~VLlLEaG~~ 110 (614)
|||||||||++|+++|..|++ . |++|+|||+.+.
T Consensus 1 ~DV~IVGaGp~Gl~~A~~La~~~~~~-G~~v~viE~~~~ 38 (437)
T TIGR01989 1 FDVVIVGGGPVGLALAAALGNNPLTK-DLKVLLLDAVDN 38 (437)
T ss_pred CcEEEECCcHHHHHHHHHHhcCcccC-CCeEEEEeCCCC
Confidence 799999999999999999998 6 999999999643
No 199
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=97.54 E-value=5.9e-05 Score=80.52 Aligned_cols=33 Identities=39% Similarity=0.643 Sum_probs=31.2
Q ss_pred cEEEECCCCchHHHHHHHhcCCCCeEEEecCCCC
Q psy1040 77 DFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGPD 110 (614)
Q Consensus 77 DvIVVGsG~aG~~~A~~Lae~~G~~VLlLEaG~~ 110 (614)
||||||||++|+++|.+|++. |++|+|||+.+.
T Consensus 1 DviIiGaG~AGl~~A~~la~~-g~~v~liE~~~~ 33 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELARP-GLRVQLIEPHPP 33 (388)
T ss_pred CEEEECCCHHHHHHHHHHHhC-CCeEEEEccCCC
Confidence 899999999999999999998 999999998854
No 200
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=97.54 E-value=5.8e-05 Score=82.61 Aligned_cols=33 Identities=36% Similarity=0.587 Sum_probs=31.5
Q ss_pred ccEEEECCCCchHHHHHHHhcCCCCeEEEecCCC
Q psy1040 76 YDFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGP 109 (614)
Q Consensus 76 yDvIVVGsG~aG~~~A~~Lae~~G~~VLlLEaG~ 109 (614)
||+||||||+||..+|.+|++. |++|+|+|++.
T Consensus 1 yDvvVIGaGpaG~~aA~~aa~~-g~~v~lie~~~ 33 (463)
T TIGR02053 1 YDLVIIGSGAAAFAAAIKAAEL-GASVAMVERGP 33 (463)
T ss_pred CCEEEECCCHHHHHHHHHHHHC-CCeEEEEeCCc
Confidence 7999999999999999999998 99999999864
No 201
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=97.54 E-value=0.0014 Score=74.57 Aligned_cols=37 Identities=24% Similarity=0.321 Sum_probs=33.9
Q ss_pred CcccEEEECCCCchHHHHHHHhcCCCCeEEEecCCCCC
Q psy1040 74 EEYDFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGPDE 111 (614)
Q Consensus 74 ~~yDvIVVGsG~aG~~~A~~Lae~~G~~VLlLEaG~~~ 111 (614)
...+|+|||||++|+++|..|++. |++|+|+|+.+..
T Consensus 309 ~~kkVaIIG~GpaGl~aA~~L~~~-G~~Vtv~e~~~~~ 345 (639)
T PRK12809 309 RSEKVAVIGAGPAGLGCADILARA-GVQVDVFDRHPEI 345 (639)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHc-CCcEEEEeCCCCC
Confidence 357899999999999999999998 9999999998764
No 202
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=97.54 E-value=6.4e-05 Score=80.03 Aligned_cols=33 Identities=36% Similarity=0.562 Sum_probs=31.6
Q ss_pred cEEEECCCCchHHHHHHHhcCCC-CeEEEecCCCC
Q psy1040 77 DFVVVGGGVAGPVVAGRLVENPN-WKVLLLEAGPD 110 (614)
Q Consensus 77 DvIVVGsG~aG~~~A~~Lae~~G-~~VLlLEaG~~ 110 (614)
||||||||++|+++|..|+++ | ++|+|+|+.+.
T Consensus 1 dv~IvGaG~aGl~~A~~L~~~-G~~~v~v~E~~~~ 34 (382)
T TIGR01984 1 DVIIVGGGLVGLSLALALSRL-GKIKIALIEANSP 34 (382)
T ss_pred CEEEECccHHHHHHHHHHhcC-CCceEEEEeCCCc
Confidence 899999999999999999999 9 99999999865
No 203
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=97.54 E-value=5.9e-05 Score=82.57 Aligned_cols=32 Identities=47% Similarity=0.649 Sum_probs=31.0
Q ss_pred cccEEEECCCCchHHHHHHHhcCCCCeEEEecC
Q psy1040 75 EYDFVVVGGGVAGPVVAGRLVENPNWKVLLLEA 107 (614)
Q Consensus 75 ~yDvIVVGsG~aG~~~A~~Lae~~G~~VLlLEa 107 (614)
+||+||||||+||+.+|.+|++. |++|+|+|+
T Consensus 1 ~yDvvVIG~G~aGl~aA~~la~~-G~~v~lie~ 32 (461)
T TIGR01350 1 AYDVVVIGGGPGGYVAAIRAAQL-GLKVALVEK 32 (461)
T ss_pred CccEEEECCCHHHHHHHHHHHhC-CCeEEEEec
Confidence 49999999999999999999998 999999999
No 204
>KOG0029|consensus
Probab=97.54 E-value=6.7e-05 Score=81.78 Aligned_cols=39 Identities=31% Similarity=0.463 Sum_probs=35.9
Q ss_pred CCcccEEEECCCCchHHHHHHHhcCCCCeEEEecCCCCCC
Q psy1040 73 QEEYDFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGPDEP 112 (614)
Q Consensus 73 ~~~yDvIVVGsG~aG~~~A~~Lae~~G~~VLlLEaG~~~~ 112 (614)
....+|||||||.||++||..|.+. |.+|+|||+-++.+
T Consensus 13 ~~~~~VIVIGAGiaGLsAArqL~~~-G~~V~VLEARdRvG 51 (501)
T KOG0029|consen 13 GKKKKVIVIGAGLAGLSAARQLQDF-GFDVLVLEARDRVG 51 (501)
T ss_pred cCCCcEEEECCcHHHHHHHHHHHHc-CCceEEEeccCCcC
Confidence 4568999999999999999999999 99999999998875
No 205
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=97.53 E-value=6.8e-05 Score=84.57 Aligned_cols=34 Identities=35% Similarity=0.593 Sum_probs=32.0
Q ss_pred CcccEEEECCCCchHHHHHHHhcCCCCeEEEecCC
Q psy1040 74 EEYDFVVVGGGVAGPVVAGRLVENPNWKVLLLEAG 108 (614)
Q Consensus 74 ~~yDvIVVGsG~aG~~~A~~Lae~~G~~VLlLEaG 108 (614)
.+||+||||+|++|..+|.++++. |+||+|+|++
T Consensus 115 ~~yDviVIG~G~gG~~aA~~aa~~-G~kV~lie~~ 148 (659)
T PTZ00153 115 EEYDVGIIGCGVGGHAAAINAMER-GLKVIIFTGD 148 (659)
T ss_pred ccCCEEEECCCHHHHHHHHHHHHC-CCcEEEEeCC
Confidence 379999999999999999999999 9999999965
No 206
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=97.53 E-value=6.7e-05 Score=79.64 Aligned_cols=34 Identities=38% Similarity=0.657 Sum_probs=31.1
Q ss_pred cEEEECCCCchHHHHHHH--hcCCCCeEEEecCCCCC
Q psy1040 77 DFVVVGGGVAGPVVAGRL--VENPNWKVLLLEAGPDE 111 (614)
Q Consensus 77 DvIVVGsG~aG~~~A~~L--ae~~G~~VLlLEaG~~~ 111 (614)
||||||+|+||+++|.+| ++. |.+|+|||+.+..
T Consensus 1 DviIvGaGpAGlslA~~l~~~~~-g~~Vllid~~~~~ 36 (374)
T PF05834_consen 1 DVIIVGAGPAGLSLARRLADARP-GLSVLLIDPKPKP 36 (374)
T ss_pred CEEEECCcHHHHHHHHHHHhcCC-CCEEEEEcCCccc
Confidence 899999999999999999 766 9999999998653
No 207
>PRK14694 putative mercuric reductase; Provisional
Probab=97.53 E-value=6.6e-05 Score=82.24 Aligned_cols=36 Identities=25% Similarity=0.389 Sum_probs=33.7
Q ss_pred CCcccEEEECCCCchHHHHHHHhcCCCCeEEEecCCC
Q psy1040 73 QEEYDFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGP 109 (614)
Q Consensus 73 ~~~yDvIVVGsG~aG~~~A~~Lae~~G~~VLlLEaG~ 109 (614)
+..||+||||||+||+++|.+|++. |++|+|+|++.
T Consensus 4 ~~~~dviVIGaG~aG~~aA~~l~~~-g~~v~lie~~~ 39 (468)
T PRK14694 4 DNNLHIAVIGSGGSAMAAALKATER-GARVTLIERGT 39 (468)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHhC-CCcEEEEEccc
Confidence 4579999999999999999999999 99999999974
No 208
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=97.52 E-value=6.4e-05 Score=76.96 Aligned_cols=33 Identities=33% Similarity=0.523 Sum_probs=31.6
Q ss_pred ccEEEECCCCchHHHHHHHhcCCCCeEEEecCCC
Q psy1040 76 YDFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGP 109 (614)
Q Consensus 76 yDvIVVGsG~aG~~~A~~Lae~~G~~VLlLEaG~ 109 (614)
||+||||||++|+.+|..|++. |.+|+|+|++.
T Consensus 1 ~dvvIIG~G~aGl~aA~~l~~~-g~~v~lie~~~ 33 (300)
T TIGR01292 1 YDVIIIGAGPAGLTAAIYAARA-NLKTLIIEGME 33 (300)
T ss_pred CcEEEECCCHHHHHHHHHHHHC-CCCEEEEeccC
Confidence 7999999999999999999998 99999999885
No 209
>PRK07190 hypothetical protein; Provisional
Probab=97.50 E-value=7.2e-05 Score=82.12 Aligned_cols=36 Identities=17% Similarity=0.232 Sum_probs=33.6
Q ss_pred CcccEEEECCCCchHHHHHHHhcCCCCeEEEecCCCC
Q psy1040 74 EEYDFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGPD 110 (614)
Q Consensus 74 ~~yDvIVVGsG~aG~~~A~~Lae~~G~~VLlLEaG~~ 110 (614)
..+||||||||++|+++|..|++. |.+|+||||.+.
T Consensus 4 ~~~dVlIVGAGPaGL~lA~~Lar~-Gi~V~llEr~~~ 39 (487)
T PRK07190 4 QVTDVVIIGAGPVGLMCAYLGQLC-GLNTVIVDKSDG 39 (487)
T ss_pred ccceEEEECCCHHHHHHHHHHHHc-CCCEEEEeCCCc
Confidence 458999999999999999999998 999999999865
No 210
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.50 E-value=7.2e-05 Score=81.94 Aligned_cols=33 Identities=36% Similarity=0.492 Sum_probs=31.8
Q ss_pred cccEEEECCCCchHHHHHHHhcCCCCeEEEecCC
Q psy1040 75 EYDFVVVGGGVAGPVVAGRLVENPNWKVLLLEAG 108 (614)
Q Consensus 75 ~yDvIVVGsG~aG~~~A~~Lae~~G~~VLlLEaG 108 (614)
+||+||||||+||..+|.+|++. |++|+|+|++
T Consensus 4 ~~DvvIIG~GpaG~~AA~~aa~~-G~~V~lie~~ 36 (466)
T PRK07818 4 HYDVVVLGAGPGGYVAAIRAAQL-GLKTAVVEKK 36 (466)
T ss_pred cCCEEEECCCHHHHHHHHHHHhC-CCeEEEEecC
Confidence 59999999999999999999999 9999999986
No 211
>PTZ00367 squalene epoxidase; Provisional
Probab=97.50 E-value=7.5e-05 Score=82.99 Aligned_cols=36 Identities=44% Similarity=0.778 Sum_probs=33.5
Q ss_pred CCcccEEEECCCCchHHHHHHHhcCCCCeEEEecCCC
Q psy1040 73 QEEYDFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGP 109 (614)
Q Consensus 73 ~~~yDvIVVGsG~aG~~~A~~Lae~~G~~VLlLEaG~ 109 (614)
+.+|||||||||++|+++|..|+++ |++|+|+|+.+
T Consensus 31 ~~~~dViIVGaGiaGlalA~aLar~-G~~V~VlEr~~ 66 (567)
T PTZ00367 31 NYDYDVIIVGGSIAGPVLAKALSKQ-GRKVLMLERDL 66 (567)
T ss_pred ccCccEEEECCCHHHHHHHHHHHhc-CCEEEEEcccc
Confidence 4579999999999999999999998 99999999975
No 212
>PTZ00052 thioredoxin reductase; Provisional
Probab=97.50 E-value=7.9e-05 Score=82.18 Aligned_cols=34 Identities=35% Similarity=0.486 Sum_probs=31.9
Q ss_pred CcccEEEECCCCchHHHHHHHhcCCCCeEEEecCC
Q psy1040 74 EEYDFVVVGGGVAGPVVAGRLVENPNWKVLLLEAG 108 (614)
Q Consensus 74 ~~yDvIVVGsG~aG~~~A~~Lae~~G~~VLlLEaG 108 (614)
..||+||||+|+||..+|.+|++. |++|+|||++
T Consensus 4 ~~yDviVIG~GpaG~~AA~~aa~~-G~~V~lie~~ 37 (499)
T PTZ00052 4 FMYDLVVIGGGSGGMAAAKEAAAH-GKKVALFDYV 37 (499)
T ss_pred cccCEEEECCCHHHHHHHHHHHhC-CCeEEEEecc
Confidence 469999999999999999999999 9999999974
No 213
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=97.48 E-value=8e-05 Score=83.23 Aligned_cols=35 Identities=29% Similarity=0.488 Sum_probs=32.6
Q ss_pred CcccEEEECCCCchHHHHHHHhcCCCCeEEEecCCC
Q psy1040 74 EEYDFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGP 109 (614)
Q Consensus 74 ~~yDvIVVGsG~aG~~~A~~Lae~~G~~VLlLEaG~ 109 (614)
..||+||||||+||+.+|.+|++. |++|+|+|++.
T Consensus 3 ~~yDVvIIGgGpAGL~AA~~lar~-g~~V~liE~~~ 37 (555)
T TIGR03143 3 EIYDLIIIGGGPAGLSAGIYAGRA-KLDTLIIEKDD 37 (555)
T ss_pred CcCcEEEECCCHHHHHHHHHHHHC-CCCEEEEecCC
Confidence 359999999999999999999998 99999999974
No 214
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=97.46 E-value=8.4e-05 Score=79.89 Aligned_cols=33 Identities=27% Similarity=0.615 Sum_probs=31.7
Q ss_pred cccEEEECCCCchHHHHHHHhcCCCCeEEEecCC
Q psy1040 75 EYDFVVVGGGVAGPVVAGRLVENPNWKVLLLEAG 108 (614)
Q Consensus 75 ~yDvIVVGsG~aG~~~A~~Lae~~G~~VLlLEaG 108 (614)
.|||+|||+|++|+++|..|++. |++|+|||+.
T Consensus 4 ~~dV~IvGaG~~Gl~~A~~L~~~-G~~v~viE~~ 36 (405)
T PRK08850 4 SVDVAIIGGGMVGLALAAALKES-DLRIAVIEGQ 36 (405)
T ss_pred cCCEEEECccHHHHHHHHHHHhC-CCEEEEEcCC
Confidence 58999999999999999999998 9999999986
No 215
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=97.45 E-value=8.9e-05 Score=81.40 Aligned_cols=33 Identities=39% Similarity=0.553 Sum_probs=31.7
Q ss_pred CcccEEEECCCCchHHHHHHHhcCCCCeEEEecC
Q psy1040 74 EEYDFVVVGGGVAGPVVAGRLVENPNWKVLLLEA 107 (614)
Q Consensus 74 ~~yDvIVVGsG~aG~~~A~~Lae~~G~~VLlLEa 107 (614)
.+||+||||||+||+.+|.+|++. |++|+|||+
T Consensus 3 ~~~DviIIG~G~aG~~aA~~~~~~-g~~v~lie~ 35 (475)
T PRK06327 3 KQFDVVVIGAGPGGYVAAIRAAQL-GLKVACIEA 35 (475)
T ss_pred cceeEEEECCCHHHHHHHHHHHhC-CCeEEEEec
Confidence 469999999999999999999999 999999998
No 216
>PRK06834 hypothetical protein; Provisional
Probab=97.44 E-value=0.0001 Score=81.04 Aligned_cols=35 Identities=34% Similarity=0.585 Sum_probs=33.0
Q ss_pred cccEEEECCCCchHHHHHHHhcCCCCeEEEecCCCC
Q psy1040 75 EYDFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGPD 110 (614)
Q Consensus 75 ~yDvIVVGsG~aG~~~A~~Lae~~G~~VLlLEaG~~ 110 (614)
++||||||+|++|+++|..|++. |++|+|||+.+.
T Consensus 3 ~~dVlIVGaGp~Gl~lA~~La~~-G~~v~vlEr~~~ 37 (488)
T PRK06834 3 EHAVVIAGGGPTGLMLAGELALA-GVDVAIVERRPN 37 (488)
T ss_pred cceEEEECCCHHHHHHHHHHHHC-CCcEEEEecCCC
Confidence 58999999999999999999999 999999999864
No 217
>PLN02507 glutathione reductase
Probab=97.42 E-value=0.0001 Score=81.32 Aligned_cols=34 Identities=26% Similarity=0.319 Sum_probs=32.0
Q ss_pred CCcccEEEECCCCchHHHHHHHhcCCCCeEEEecC
Q psy1040 73 QEEYDFVVVGGGVAGPVVAGRLVENPNWKVLLLEA 107 (614)
Q Consensus 73 ~~~yDvIVVGsG~aG~~~A~~Lae~~G~~VLlLEa 107 (614)
..+||+||||||++|..+|.+|++. |+||+|+|+
T Consensus 23 ~~~yDvvVIG~GpaG~~aA~~a~~~-G~~V~liE~ 56 (499)
T PLN02507 23 HYDFDLFVIGAGSGGVRAARFSANF-GAKVGICEL 56 (499)
T ss_pred ccccCEEEECCCHHHHHHHHHHHHC-CCeEEEEec
Confidence 3479999999999999999999999 999999996
No 218
>PRK14727 putative mercuric reductase; Provisional
Probab=97.40 E-value=0.00014 Score=80.00 Aligned_cols=36 Identities=19% Similarity=0.280 Sum_probs=33.3
Q ss_pred CcccEEEECCCCchHHHHHHHhcCCCCeEEEecCCCC
Q psy1040 74 EEYDFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGPD 110 (614)
Q Consensus 74 ~~yDvIVVGsG~aG~~~A~~Lae~~G~~VLlLEaG~~ 110 (614)
..||+||||+|++|..+|.+|++. |.+|+|+|+++.
T Consensus 15 ~~~dvvvIG~G~aG~~~a~~~~~~-g~~v~~ie~~~~ 50 (479)
T PRK14727 15 LQLHVAIIGSGSAAFAAAIKAAEH-GARVTIIEGADV 50 (479)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhC-CCeEEEEEccCc
Confidence 469999999999999999999998 999999998754
No 219
>PLN02268 probable polyamine oxidase
Probab=97.40 E-value=0.00013 Score=79.31 Aligned_cols=36 Identities=36% Similarity=0.556 Sum_probs=33.6
Q ss_pred cEEEECCCCchHHHHHHHhcCCCCeEEEecCCCCCCC
Q psy1040 77 DFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGPDEPT 113 (614)
Q Consensus 77 DvIVVGsG~aG~~~A~~Lae~~G~~VLlLEaG~~~~~ 113 (614)
+|||||||.+|+++|++|.++ |++|+||||.++.+.
T Consensus 2 ~VvVIGaGisGL~aA~~L~~~-g~~v~vlEa~~r~GG 37 (435)
T PLN02268 2 SVIVIGGGIAGIAAARALHDA-SFKVTLLESRDRIGG 37 (435)
T ss_pred CEEEECCCHHHHHHHHHHHhC-CCeEEEEeCCCCCCc
Confidence 799999999999999999998 999999999988753
No 220
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=97.38 E-value=0.00012 Score=77.43 Aligned_cols=34 Identities=41% Similarity=0.843 Sum_probs=31.3
Q ss_pred cEEEECCCCchHHHHHHHhcC-CCCeEEEecCCCC
Q psy1040 77 DFVVVGGGVAGPVVAGRLVEN-PNWKVLLLEAGPD 110 (614)
Q Consensus 77 DvIVVGsG~aG~~~A~~Lae~-~G~~VLlLEaG~~ 110 (614)
||||||||+||+++|.+|+++ +|++|+|||+++.
T Consensus 1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~ 35 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRT 35 (370)
T ss_pred CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCC
Confidence 899999999999999999984 6999999999863
No 221
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=97.35 E-value=0.00014 Score=79.36 Aligned_cols=35 Identities=31% Similarity=0.468 Sum_probs=32.2
Q ss_pred cEEEECCCCchHHHHHHHhcCCC--CeEEEecCCCCCC
Q psy1040 77 DFVVVGGGVAGPVVAGRLVENPN--WKVLLLEAGPDEP 112 (614)
Q Consensus 77 DvIVVGsG~aG~~~A~~Lae~~G--~~VLlLEaG~~~~ 112 (614)
+|||||||.+|+++|++|+++ | ++|+|||+.+..+
T Consensus 2 ~v~IVGaGiaGL~aA~~L~~~-G~~~~V~vlEa~~~~G 38 (451)
T PRK11883 2 KVAIIGGGITGLSAAYRLHKK-GPDADITLLEASDRLG 38 (451)
T ss_pred eEEEECCCHHHHHHHHHHHHh-CCCCCEEEEEcCCCCc
Confidence 589999999999999999998 7 8999999987764
No 222
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=97.34 E-value=0.00015 Score=77.51 Aligned_cols=34 Identities=38% Similarity=0.513 Sum_probs=31.1
Q ss_pred cccEEEECCCCchHHHHHHHhcC--CCCeEEEecCC
Q psy1040 75 EYDFVVVGGGVAGPVVAGRLVEN--PNWKVLLLEAG 108 (614)
Q Consensus 75 ~yDvIVVGsG~aG~~~A~~Lae~--~G~~VLlLEaG 108 (614)
.|||+|||||++|+++|+.|+++ .|++|+|+|+-
T Consensus 3 ~~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~ 38 (395)
T PRK05732 3 RMDVIIVGGGMAGATLALALSRLSHGGLPVALIEAF 38 (395)
T ss_pred cCCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCC
Confidence 58999999999999999999874 39999999985
No 223
>PRK06996 hypothetical protein; Provisional
Probab=97.33 E-value=0.00018 Score=77.20 Aligned_cols=37 Identities=27% Similarity=0.557 Sum_probs=32.9
Q ss_pred CCcccEEEECCCCchHHHHHHHhcCCC----CeEEEecCCCC
Q psy1040 73 QEEYDFVVVGGGVAGPVVAGRLVENPN----WKVLLLEAGPD 110 (614)
Q Consensus 73 ~~~yDvIVVGsG~aG~~~A~~Lae~~G----~~VLlLEaG~~ 110 (614)
+.+|||+|||||++|+++|..|++. | ++|+|+|+.+.
T Consensus 9 ~~~~dv~IvGgGpaG~~~A~~L~~~-g~~~g~~v~l~e~~~~ 49 (398)
T PRK06996 9 APDFDIAIVGAGPVGLALAGWLARR-SATRALSIALIDAREP 49 (398)
T ss_pred CCCCCEEEECcCHHHHHHHHHHhcC-CCcCCceEEEecCCCC
Confidence 4579999999999999999999997 6 57999999753
No 224
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=97.33 E-value=0.00026 Score=73.93 Aligned_cols=36 Identities=33% Similarity=0.449 Sum_probs=27.4
Q ss_pred cccEEEECCCCchHHHHHHHhcCCCCeEEEecCCCC
Q psy1040 75 EYDFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGPD 110 (614)
Q Consensus 75 ~yDvIVVGsG~aG~~~A~~Lae~~G~~VLlLEaG~~ 110 (614)
.||+|+||.|++++++|..|.+....+++.||+-+.
T Consensus 2 ~~D~igIG~GP~nLslA~~l~~~~~~~~~f~e~~~~ 37 (341)
T PF13434_consen 2 IYDLIGIGFGPFNLSLAALLEEHGDLKALFLERRPS 37 (341)
T ss_dssp EESEEEE--SHHHHHHHHHHHHHH---EEEEES-SS
T ss_pred ceeEEEEeeCHHHHHHHHHhhhcCCCCEEEEecCCC
Confidence 489999999999999999999984599999998754
No 225
>PRK07233 hypothetical protein; Provisional
Probab=97.32 E-value=0.00017 Score=78.19 Aligned_cols=35 Identities=34% Similarity=0.527 Sum_probs=32.9
Q ss_pred cEEEECCCCchHHHHHHHhcCCCCeEEEecCCCCCC
Q psy1040 77 DFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGPDEP 112 (614)
Q Consensus 77 DvIVVGsG~aG~~~A~~Lae~~G~~VLlLEaG~~~~ 112 (614)
+|||||||.+|+++|+.|+++ |++|+|||+.+..+
T Consensus 1 ~vvVIGaGiaGL~aA~~L~~~-G~~v~vlE~~~~~G 35 (434)
T PRK07233 1 KIAIVGGGIAGLAAAYRLAKR-GHEVTVFEADDQLG 35 (434)
T ss_pred CEEEECCCHHHHHHHHHHHHC-CCcEEEEEeCCCCC
Confidence 589999999999999999999 99999999998774
No 226
>PRK07236 hypothetical protein; Provisional
Probab=97.31 E-value=0.00017 Score=77.01 Aligned_cols=36 Identities=31% Similarity=0.475 Sum_probs=33.1
Q ss_pred CcccEEEECCCCchHHHHHHHhcCCCCeEEEecCCCC
Q psy1040 74 EEYDFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGPD 110 (614)
Q Consensus 74 ~~yDvIVVGsG~aG~~~A~~Lae~~G~~VLlLEaG~~ 110 (614)
...||||||||++|+++|..|+++ |++|+|+|+.+.
T Consensus 5 ~~~~ViIVGaG~aGl~~A~~L~~~-G~~v~v~E~~~~ 40 (386)
T PRK07236 5 SGPRAVVIGGSLGGLFAALLLRRA-GWDVDVFERSPT 40 (386)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhC-CCCEEEEecCCC
Confidence 358999999999999999999998 999999999854
No 227
>PRK09897 hypothetical protein; Provisional
Probab=97.30 E-value=0.0021 Score=70.90 Aligned_cols=36 Identities=17% Similarity=0.300 Sum_probs=30.7
Q ss_pred ccEEEECCCCchHHHHHHHhcC-CCCeEEEecCCCCC
Q psy1040 76 YDFVVVGGGVAGPVVAGRLVEN-PNWKVLLLEAGPDE 111 (614)
Q Consensus 76 yDvIVVGsG~aG~~~A~~Lae~-~G~~VLlLEaG~~~ 111 (614)
++++|||+|++|+.+|.+|++. ...+|+|+|+....
T Consensus 2 ~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~~ 38 (534)
T PRK09897 2 KKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADEA 38 (534)
T ss_pred CeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCCC
Confidence 4799999999999999999875 24699999997653
No 228
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=97.30 E-value=0.00023 Score=74.52 Aligned_cols=39 Identities=31% Similarity=0.441 Sum_probs=35.8
Q ss_pred CCcccEEEECCCCchHHHHHHHhcCCCCeEEEecCCCCCC
Q psy1040 73 QEEYDFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGPDEP 112 (614)
Q Consensus 73 ~~~yDvIVVGsG~aG~~~A~~Lae~~G~~VLlLEaG~~~~ 112 (614)
....||||||+|.+|+++|+.|.++ |++|+|||+-+...
T Consensus 5 ~~~~~viivGaGlaGL~AA~eL~ka-G~~v~ilEar~r~G 43 (450)
T COG1231 5 PKTADVIIVGAGLAGLSAAYELKKA-GYQVQILEARDRVG 43 (450)
T ss_pred CCCCcEEEECCchHHHHHHHHHhhc-CcEEEEEeccCCcC
Confidence 4568999999999999999999999 99999999988764
No 229
>PLN02576 protoporphyrinogen oxidase
Probab=97.30 E-value=0.0002 Score=79.25 Aligned_cols=39 Identities=33% Similarity=0.356 Sum_probs=34.7
Q ss_pred CcccEEEECCCCchHHHHHHHhcCCCCeEEEecCCCCCC
Q psy1040 74 EEYDFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGPDEP 112 (614)
Q Consensus 74 ~~yDvIVVGsG~aG~~~A~~Lae~~G~~VLlLEaG~~~~ 112 (614)
..+||||||||.+|+++|++|+++.|.+|+||||.+..+
T Consensus 11 ~~~~v~IIGaGisGL~aA~~L~~~~g~~v~vlEa~~rvG 49 (496)
T PLN02576 11 SSKDVAVVGAGVSGLAAAYALASKHGVNVLVTEARDRVG 49 (496)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHhcCCCEEEEecCCCCC
Confidence 458999999999999999999985379999999998764
No 230
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=97.28 E-value=0.0033 Score=63.35 Aligned_cols=37 Identities=27% Similarity=0.322 Sum_probs=32.5
Q ss_pred CcccEEEECCCCchHHHHHHHhcCCCCeEEEecCCCCCC
Q psy1040 74 EEYDFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGPDEP 112 (614)
Q Consensus 74 ~~yDvIVVGsG~aG~~~A~~Lae~~G~~VLlLEaG~~~~ 112 (614)
..-++.|||+|.+|+++|+.|++. .+|.|.|++...+
T Consensus 7 ~r~~IAVIGsGisGLSAA~~Ls~r--hdVTLfEA~~rlG 43 (447)
T COG2907 7 PRRKIAVIGSGISGLSAAWLLSRR--HDVTLFEADRRLG 43 (447)
T ss_pred CCcceEEEcccchhhhhHHhhhcc--cceEEEecccccc
Confidence 345899999999999999999986 7999999997754
No 231
>PRK10262 thioredoxin reductase; Provisional
Probab=97.20 E-value=0.00025 Score=73.64 Aligned_cols=61 Identities=16% Similarity=0.329 Sum_probs=42.3
Q ss_pred hhhhcCCCeEEEcccEEEEEEEcCCCCeEEEEEEEeCC-CCceEEEEeccEEEEccCCCChHHHH
Q psy1040 277 RDKYKQDNLKVQLNAHVMKLNIDPKTKRALSVQFKDTN-TNEIKTVKAKKEIILTAGAIGSPQLL 340 (614)
Q Consensus 277 ~~~~~~~n~~I~~~~~V~~I~~d~~~~ra~GV~~~~~~-~g~~~~v~A~k~VVlaaG~i~sp~LL 340 (614)
...+++.|+++++++.|++|.-+ ++++.+|++.+.. ++...++.++ .||++.|......|+
T Consensus 192 ~~~l~~~gV~i~~~~~v~~v~~~--~~~~~~v~~~~~~~~~~~~~i~~D-~vv~a~G~~p~~~l~ 253 (321)
T PRK10262 192 MDKVENGNIILHTNRTLEEVTGD--QMGVTGVRLRDTQNSDNIESLDVA-GLFVAIGHSPNTAIF 253 (321)
T ss_pred HhhccCCCeEEEeCCEEEEEEcC--CccEEEEEEEEcCCCCeEEEEECC-EEEEEeCCccChhHh
Confidence 33445678999999999998654 4567788876532 1344578887 799999966555544
No 232
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=97.18 E-value=0.00026 Score=77.75 Aligned_cols=33 Identities=36% Similarity=0.645 Sum_probs=31.5
Q ss_pred cccEEEECCCCchHHHHHHHhcCCCCeEEEecCC
Q psy1040 75 EYDFVVVGGGVAGPVVAGRLVENPNWKVLLLEAG 108 (614)
Q Consensus 75 ~yDvIVVGsG~aG~~~A~~Lae~~G~~VLlLEaG 108 (614)
+||+||||+|++|..+|.++++. |++|+|+|+.
T Consensus 2 ~yDvvVIG~G~aG~~aA~~aa~~-G~~v~lie~~ 34 (484)
T TIGR01438 2 DYDLIVIGGGSGGLAAAKEAADY-GAKVMLLDFV 34 (484)
T ss_pred ccCEEEECCCHHHHHHHHHHHHC-CCeEEEEecc
Confidence 59999999999999999999999 9999999974
No 233
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=97.17 E-value=0.00031 Score=76.83 Aligned_cols=37 Identities=27% Similarity=0.366 Sum_probs=33.5
Q ss_pred ccEEEECCCCchHHHHHHHhcCC---CCeEEEecCCCCCC
Q psy1040 76 YDFVVVGGGVAGPVVAGRLVENP---NWKVLLLEAGPDEP 112 (614)
Q Consensus 76 yDvIVVGsG~aG~~~A~~Lae~~---G~~VLlLEaG~~~~ 112 (614)
.|+||||||.+|+++|++|+++. |.+|+|+|+.+..+
T Consensus 3 ~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~r~G 42 (462)
T TIGR00562 3 KHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASDRVG 42 (462)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCCcCc
Confidence 58999999999999999999862 89999999988764
No 234
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=97.16 E-value=0.00034 Score=79.25 Aligned_cols=37 Identities=30% Similarity=0.496 Sum_probs=33.8
Q ss_pred CCcccEEEECCCCchHHHHHHHhc-CCCCeEEEecCCCC
Q psy1040 73 QEEYDFVVVGGGVAGPVVAGRLVE-NPNWKVLLLEAGPD 110 (614)
Q Consensus 73 ~~~yDvIVVGsG~aG~~~A~~Lae-~~G~~VLlLEaG~~ 110 (614)
..++||+|||||++|+++|..|++ . |.+|+|||+.+.
T Consensus 30 ~~~~dVlIVGAGPaGL~lA~~Lar~~-Gi~v~IiE~~~~ 67 (634)
T PRK08294 30 PDEVDVLIVGCGPAGLTLAAQLSAFP-DITTRIVERKPG 67 (634)
T ss_pred CCCCCEEEECCCHHHHHHHHHHhcCC-CCcEEEEEcCCC
Confidence 457999999999999999999999 6 999999998754
No 235
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=97.16 E-value=0.00032 Score=67.21 Aligned_cols=33 Identities=42% Similarity=0.652 Sum_probs=30.2
Q ss_pred cEEEECCCCchHHHHHHHhcCCCCeEEEecCCCC
Q psy1040 77 DFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGPD 110 (614)
Q Consensus 77 DvIVVGsG~aG~~~A~~Lae~~G~~VLlLEaG~~ 110 (614)
|+||||||+||+.+|.+|++. +.+|+|+|+.+.
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~-~~~v~ii~~~~~ 33 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARP-GAKVLIIEKSPG 33 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHT-TSEEEEESSSSH
T ss_pred CEEEEecHHHHHHHHHHHhcC-CCeEEEEecccc
Confidence 799999999999999999987 999999987643
No 236
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=97.16 E-value=0.00031 Score=74.31 Aligned_cols=35 Identities=31% Similarity=0.380 Sum_probs=32.3
Q ss_pred ccEEEECCCCchHHHHHHHhcCCCCeEEEecCCCCC
Q psy1040 76 YDFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGPDE 111 (614)
Q Consensus 76 yDvIVVGsG~aG~~~A~~Lae~~G~~VLlLEaG~~~ 111 (614)
-||+|||||.+|+.+|..||+. |++|+|+|+.+..
T Consensus 3 ~dVvVIGGGlAGleAAlaLAr~-Gl~V~LiE~rp~~ 37 (436)
T PRK05335 3 KPVNVIGAGLAGSEAAWQLAKR-GVPVELYEMRPVK 37 (436)
T ss_pred CcEEEECCCHHHHHHHHHHHhC-CCcEEEEEccCcc
Confidence 4899999999999999999998 9999999987653
No 237
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=97.15 E-value=0.00032 Score=74.77 Aligned_cols=34 Identities=29% Similarity=0.411 Sum_probs=32.5
Q ss_pred EEEECCCCchHHHHHHHhcCCCCeEEEecCCCCCC
Q psy1040 78 FVVVGGGVAGPVVAGRLVENPNWKVLLLEAGPDEP 112 (614)
Q Consensus 78 vIVVGsG~aG~~~A~~Lae~~G~~VLlLEaG~~~~ 112 (614)
|+|+|||.||+++|++||++ |++|.|+|+++..+
T Consensus 3 Vai~GaG~AgL~~a~~La~~-g~~vt~~ea~~~~G 36 (485)
T COG3349 3 VAIAGAGLAGLAAAYELADA-GYDVTLYEARDRLG 36 (485)
T ss_pred EEEEcccHHHHHHHHHHHhC-CCceEEEeccCccC
Confidence 89999999999999999999 99999999998874
No 238
>PLN02676 polyamine oxidase
Probab=97.11 E-value=0.00048 Score=75.63 Aligned_cols=38 Identities=29% Similarity=0.407 Sum_probs=34.5
Q ss_pred CcccEEEECCCCchHHHHHHHhcCCCC-eEEEecCCCCCC
Q psy1040 74 EEYDFVVVGGGVAGPVVAGRLVENPNW-KVLLLEAGPDEP 112 (614)
Q Consensus 74 ~~yDvIVVGsG~aG~~~A~~Lae~~G~-~VLlLEaG~~~~ 112 (614)
..+||||||||.+|+++|++|+++ |. +|+|||+.+...
T Consensus 25 ~~~~v~IIGaG~sGL~aa~~L~~~-g~~~v~vlE~~~~~G 63 (487)
T PLN02676 25 PSPSVIIVGAGMSGISAAKTLSEA-GIEDILILEATDRIG 63 (487)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHc-CCCcEEEecCCCCCC
Confidence 358999999999999999999998 98 599999988764
No 239
>PRK05868 hypothetical protein; Validated
Probab=97.11 E-value=0.00037 Score=73.95 Aligned_cols=33 Identities=33% Similarity=0.464 Sum_probs=31.4
Q ss_pred cEEEECCCCchHHHHHHHhcCCCCeEEEecCCCC
Q psy1040 77 DFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGPD 110 (614)
Q Consensus 77 DvIVVGsG~aG~~~A~~Lae~~G~~VLlLEaG~~ 110 (614)
||+|||||++|+++|..|+++ |++|+|+|+.+.
T Consensus 3 ~V~IvGgG~aGl~~A~~L~~~-G~~v~viE~~~~ 35 (372)
T PRK05868 3 TVVVSGASVAGTAAAYWLGRH-GYSVTMVERHPG 35 (372)
T ss_pred eEEEECCCHHHHHHHHHHHhC-CCCEEEEcCCCC
Confidence 899999999999999999998 999999999865
No 240
>PLN02529 lysine-specific histone demethylase 1
Probab=97.07 E-value=0.00061 Score=77.53 Aligned_cols=39 Identities=31% Similarity=0.470 Sum_probs=35.2
Q ss_pred CCcccEEEECCCCchHHHHHHHhcCCCCeEEEecCCCCCC
Q psy1040 73 QEEYDFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGPDEP 112 (614)
Q Consensus 73 ~~~yDvIVVGsG~aG~~~A~~Lae~~G~~VLlLEaG~~~~ 112 (614)
....|++|||||++|+.+|..|++. |++|+|+|+.+...
T Consensus 158 ~~~~~v~viGaG~aGl~aA~~l~~~-g~~v~v~E~~~~~G 196 (738)
T PLN02529 158 GTEGSVIIVGAGLAGLAAARQLLSF-GFKVVVLEGRNRPG 196 (738)
T ss_pred cCCCCEEEECcCHHHHHHHHHHHHc-CCcEEEEecCccCc
Confidence 3468999999999999999999999 99999999987653
No 241
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain. In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.
Probab=97.07 E-value=0.0063 Score=64.81 Aligned_cols=47 Identities=19% Similarity=0.286 Sum_probs=33.9
Q ss_pred hhhcCCCeEEEcccEEEEEEEcCCCCeEEEEEEEeCCCCceEEEEeccEEEEccCCC
Q psy1040 278 DKYKQDNLKVQLNAHVMKLNIDPKTKRALSVQFKDTNTNEIKTVKAKKEIILTAGAI 334 (614)
Q Consensus 278 ~~~~~~n~~I~~~~~V~~I~~d~~~~ra~GV~~~~~~~g~~~~v~A~k~VVlaaG~i 334 (614)
..+.+ |++|++++.|++|..+ +++ .+|+..+ |. .++|+ .||+|+|++
T Consensus 143 ~~~~~-G~~i~~~~~V~~i~~~--~~~-~~v~t~~---g~--~~~a~-~vV~a~G~~ 189 (381)
T TIGR03197 143 AHAGI-RLTLHFNTEITSLERD--GEG-WQLLDAN---GE--VIAAS-VVVLANGAQ 189 (381)
T ss_pred hccCC-CcEEEeCCEEEEEEEc--CCe-EEEEeCC---CC--EEEcC-EEEEcCCcc
Confidence 34456 9999999999999876 444 3454432 32 47896 699999976
No 242
>PLN02568 polyamine oxidase
Probab=97.05 E-value=0.00055 Score=75.93 Aligned_cols=37 Identities=24% Similarity=0.495 Sum_probs=33.8
Q ss_pred cccEEEECCCCchHHHHHHHhcCCC-----CeEEEecCCCCCC
Q psy1040 75 EYDFVVVGGGVAGPVVAGRLVENPN-----WKVLLLEAGPDEP 112 (614)
Q Consensus 75 ~yDvIVVGsG~aG~~~A~~Lae~~G-----~~VLlLEaG~~~~ 112 (614)
.+||||||||.+|+++|.+|++. | ++|+|||+....+
T Consensus 5 ~~~v~iiGaG~aGl~aa~~L~~~-g~~~~~~~v~v~E~~~~~G 46 (539)
T PLN02568 5 KPRIVIIGAGMAGLTAANKLYTS-SAANDMFELTVVEGGDRIG 46 (539)
T ss_pred CCcEEEECCCHHHHHHHHHHHhc-ccccCCceEEEEeCCCCcC
Confidence 47999999999999999999987 6 8999999998764
No 243
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=96.98 E-value=0.00053 Score=75.12 Aligned_cols=36 Identities=25% Similarity=0.318 Sum_probs=31.9
Q ss_pred cEEEECCCCchHHHHHHHhcC-----CCCeEEEecCCCCCC
Q psy1040 77 DFVVVGGGVAGPVVAGRLVEN-----PNWKVLLLEAGPDEP 112 (614)
Q Consensus 77 DvIVVGsG~aG~~~A~~Lae~-----~G~~VLlLEaG~~~~ 112 (614)
+|||||||.+|+++|++|+++ .|.+|+||||.+..+
T Consensus 3 ~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~r~G 43 (463)
T PRK12416 3 TVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYLG 43 (463)
T ss_pred eEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecCCCcc
Confidence 699999999999999999985 248999999998774
No 244
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=96.95 E-value=0.00076 Score=73.51 Aligned_cols=31 Identities=23% Similarity=0.647 Sum_probs=27.2
Q ss_pred cccEEEECCCCchHHHHHHHhcCCCCeEEEecCC
Q psy1040 75 EYDFVVVGGGVAGPVVAGRLVENPNWKVLLLEAG 108 (614)
Q Consensus 75 ~yDvIVVGsG~aG~~~A~~Lae~~G~~VLlLEaG 108 (614)
+||+||||+|++|..+|.++ . |+||+|+|++
T Consensus 2 ~yD~vvIG~G~~g~~aa~~~--~-g~~V~lie~~ 32 (452)
T TIGR03452 2 HYDLIIIGTGSGNSIPDPRF--A-DKRIAIVEKG 32 (452)
T ss_pred CcCEEEECCCHHHHHHHHHH--C-CCeEEEEeCC
Confidence 59999999999999887654 5 9999999985
No 245
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=96.94 E-value=0.0007 Score=79.28 Aligned_cols=37 Identities=22% Similarity=0.244 Sum_probs=34.0
Q ss_pred CcccEEEECCCCchHHHHHHHhcCCCCeEEEecCCCCC
Q psy1040 74 EEYDFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGPDE 111 (614)
Q Consensus 74 ~~yDvIVVGsG~aG~~~A~~Lae~~G~~VLlLEaG~~~ 111 (614)
..+||+|||||+||+++|++|++. |++|+|+|+.+..
T Consensus 536 ~~kkVaIIGGGPAGLSAA~~LAr~-G~~VTV~Ek~~~l 572 (1012)
T TIGR03315 536 SAHKVAVIGAGPAGLSAGYFLARA-GHPVTVFEKKEKP 572 (1012)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHC-CCeEEEEeccccc
Confidence 458999999999999999999998 9999999998654
No 246
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=96.94 E-value=0.00068 Score=76.21 Aligned_cols=36 Identities=28% Similarity=0.478 Sum_probs=33.3
Q ss_pred CCcccEEEECCCCchHHHHHHHhcCCCCeEEEecCCC
Q psy1040 73 QEEYDFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGP 109 (614)
Q Consensus 73 ~~~yDvIVVGsG~aG~~~A~~Lae~~G~~VLlLEaG~ 109 (614)
...++|+|||||++|+++|..|+++ |++|+|+||.+
T Consensus 79 ~~~~~VlIVGgGIaGLalAlaL~r~-Gi~V~V~Er~~ 114 (668)
T PLN02927 79 KKKSRVLVAGGGIGGLVFALAAKKK-GFDVLVFEKDL 114 (668)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHhc-CCeEEEEeccc
Confidence 4568999999999999999999999 99999999974
No 247
>KOG2614|consensus
Probab=96.90 E-value=0.00082 Score=69.50 Aligned_cols=34 Identities=35% Similarity=0.524 Sum_probs=31.3
Q ss_pred ccEEEECCCCchHHHHHHHhcCCCCeEEEecCCCC
Q psy1040 76 YDFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGPD 110 (614)
Q Consensus 76 yDvIVVGsG~aG~~~A~~Lae~~G~~VLlLEaG~~ 110 (614)
-+|||||||.+|++.|.-|++. |++|+|+|+-..
T Consensus 3 ~~VvIvGgGI~Gla~A~~l~r~-G~~v~VlE~~e~ 36 (420)
T KOG2614|consen 3 PKVVIVGGGIVGLATALALHRK-GIDVVVLESRED 36 (420)
T ss_pred CcEEEECCcHHHHHHHHHHHHc-CCeEEEEeeccc
Confidence 4899999999999999999999 999999999543
No 248
>KOG4716|consensus
Probab=96.90 E-value=0.00083 Score=67.14 Aligned_cols=35 Identities=31% Similarity=0.478 Sum_probs=32.6
Q ss_pred CCcccEEEECCCCchHHHHHHHhcCCCCeEEEecCC
Q psy1040 73 QEEYDFVVVGGGVAGPVVAGRLVENPNWKVLLLEAG 108 (614)
Q Consensus 73 ~~~yDvIVVGsG~aG~~~A~~Lae~~G~~VLlLEaG 108 (614)
+.+||.||||+|++|+++|.+.|.. |.||.+|+.=
T Consensus 17 sydyDLIviGgGSgGLacaKeAa~~-G~kV~~lDfV 51 (503)
T KOG4716|consen 17 SYDYDLIVIGGGSGGLACAKEAADL-GAKVACLDFV 51 (503)
T ss_pred cCCccEEEEcCCcchhhHHHHHHhc-CCcEEEEeec
Confidence 5679999999999999999999999 9999999854
No 249
>KOG2960|consensus
Probab=96.85 E-value=0.00038 Score=64.96 Aligned_cols=34 Identities=38% Similarity=0.598 Sum_probs=31.2
Q ss_pred cccEEEECCCCchHHHHHHHhc-CCCCeEEEecCC
Q psy1040 75 EYDFVVVGGGVAGPVVAGRLVE-NPNWKVLLLEAG 108 (614)
Q Consensus 75 ~yDvIVVGsG~aG~~~A~~Lae-~~G~~VLlLEaG 108 (614)
+-|+||||+|.+|+++|+..++ +|.++|.+||+.
T Consensus 76 esDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~S 110 (328)
T KOG2960|consen 76 ESDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESS 110 (328)
T ss_pred ccceEEECCCccccceeeeeeccCCCceEEEEEee
Confidence 5699999999999999999995 589999999976
No 250
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=96.84 E-value=0.00083 Score=71.53 Aligned_cols=33 Identities=36% Similarity=0.587 Sum_probs=31.1
Q ss_pred cEEEECCCCchHHHHHHHhcCCCCeEEEecCCCC
Q psy1040 77 DFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGPD 110 (614)
Q Consensus 77 DvIVVGsG~aG~~~A~~Lae~~G~~VLlLEaG~~ 110 (614)
||+|||||.+|+.+|..||+. |++|+|+|+.+.
T Consensus 2 ~VvVIGgGlAGleaA~~LAr~-G~~V~LiE~rp~ 34 (433)
T TIGR00137 2 PVHVIGGGLAGSEAAWQLAQA-GVPVILYEMRPE 34 (433)
T ss_pred CEEEECCCHHHHHHHHHHHhC-CCcEEEEecccc
Confidence 799999999999999999999 999999998755
No 251
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=96.83 E-value=0.0011 Score=78.81 Aligned_cols=38 Identities=26% Similarity=0.204 Sum_probs=34.5
Q ss_pred CcccEEEECCCCchHHHHHHHhcCCCCeEEEecCCCCCC
Q psy1040 74 EEYDFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGPDEP 112 (614)
Q Consensus 74 ~~yDvIVVGsG~aG~~~A~~Lae~~G~~VLlLEaG~~~~ 112 (614)
...+|+|||||+||+++|.+|++. |++|+|+|+++...
T Consensus 429 ~~~kVaIIG~GPAGLsaA~~La~~-G~~VtV~E~~~~~G 466 (1006)
T PRK12775 429 KLGKVAICGSGPAGLAAAADLVKY-GVDVTVYEALHVVG 466 (1006)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHc-CCcEEEEecCCCCc
Confidence 357999999999999999999999 99999999987653
No 252
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=96.82 E-value=0.014 Score=53.76 Aligned_cols=32 Identities=25% Similarity=0.571 Sum_probs=27.3
Q ss_pred EEECCCCchHHHHHHHhcCC----CCeEEEecCCCC
Q psy1040 79 VVVGGGVAGPVVAGRLVENP----NWKVLLLEAGPD 110 (614)
Q Consensus 79 IVVGsG~aG~~~A~~Lae~~----G~~VLlLEaG~~ 110 (614)
.|||+|++|++++.+|.+.. ..+|.|+|+.+.
T Consensus 1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~~ 36 (156)
T PF13454_consen 1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSPF 36 (156)
T ss_pred CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCCc
Confidence 49999999999999998873 579999998543
No 253
>PRK12831 putative oxidoreductase; Provisional
Probab=96.82 E-value=0.0012 Score=72.26 Aligned_cols=38 Identities=29% Similarity=0.456 Sum_probs=34.3
Q ss_pred CCcccEEEECCCCchHHHHHHHhcCCCCeEEEecCCCCC
Q psy1040 73 QEEYDFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGPDE 111 (614)
Q Consensus 73 ~~~yDvIVVGsG~aG~~~A~~Lae~~G~~VLlLEaG~~~ 111 (614)
....|++|||||+||+++|.+|++. |++|+|+|+.+..
T Consensus 138 ~~~~~V~IIG~GpAGl~aA~~l~~~-G~~V~v~e~~~~~ 175 (464)
T PRK12831 138 KKGKKVAVIGSGPAGLTCAGDLAKM-GYDVTIFEALHEP 175 (464)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHhC-CCeEEEEecCCCC
Confidence 4568999999999999999999998 9999999987653
No 254
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=96.81 E-value=0.00097 Score=66.60 Aligned_cols=35 Identities=23% Similarity=0.525 Sum_probs=33.0
Q ss_pred cccEEEECCCCchHHHHHHHhcCCCCeEEEecCCCC
Q psy1040 75 EYDFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGPD 110 (614)
Q Consensus 75 ~yDvIVVGsG~aG~~~A~~Lae~~G~~VLlLEaG~~ 110 (614)
+|||+|||+|.||+++|.+|.++ |+++.++-+|-.
T Consensus 2 ~fDv~IIGGGLAGltc~l~l~~~-Gk~c~iv~~gQs 36 (421)
T COG3075 2 NFDVAIIGGGLAGLTCGLALQQA-GKRCAIVNRGQS 36 (421)
T ss_pred cccEEEEcCcHHHHHHHHHHHhc-CCcEEEEeCChh
Confidence 59999999999999999999999 999999999854
No 255
>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [].
Probab=96.81 E-value=0.025 Score=60.54 Aligned_cols=53 Identities=17% Similarity=0.370 Sum_probs=40.0
Q ss_pred hcCCCeEEEcccEEEEEEEcCC--CCeEEEEEEEeCCCCceEE--EEeccEEEEccCCC
Q psy1040 280 YKQDNLKVQLNAHVMKLNIDPK--TKRALSVQFKDTNTNEIKT--VKAKKEIILTAGAI 334 (614)
Q Consensus 280 ~~~~n~~I~~~~~V~~I~~d~~--~~ra~GV~~~~~~~g~~~~--v~A~k~VVlaaG~i 334 (614)
++..||++..+++|+.|.++.+ ...|+++++..+ |+..+ +..+--|++.-|++
T Consensus 217 L~~~GV~F~~~t~V~di~~~~~~~~~~~~~i~~~~~--g~~~~i~l~~~DlV~vT~GS~ 273 (500)
T PF06100_consen 217 LKSQGVDFRFNTKVTDIDFDITGDKKTATRIHIEQD--GKEETIDLGPDDLVFVTNGSM 273 (500)
T ss_pred HHHCCCEEECCCEEEEEEEEccCCCeeEEEEEEEcC--CCeeEEEeCCCCEEEEECCcc
Confidence 4678999999999999999753 347788888766 55544 44544688888866
No 256
>KOG0405|consensus
Probab=96.78 E-value=0.0015 Score=65.75 Aligned_cols=36 Identities=33% Similarity=0.528 Sum_probs=33.3
Q ss_pred CCcccEEEECCCCchHHHHHHHhcCCCCeEEEecCCC
Q psy1040 73 QEEYDFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGP 109 (614)
Q Consensus 73 ~~~yDvIVVGsG~aG~~~A~~Lae~~G~~VLlLEaG~ 109 (614)
..+||+.|||+|++|..+|.|.++. |.||.|+|...
T Consensus 18 ~k~fDylvIGgGSGGvasARrAa~~-GAkv~l~E~~f 53 (478)
T KOG0405|consen 18 VKDFDYLVIGGGSGGVASARRAASH-GAKVALCELPF 53 (478)
T ss_pred ccccceEEEcCCcchhHHhHHHHhc-CceEEEEecCC
Confidence 4589999999999999999999998 99999999873
No 257
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=96.70 E-value=0.0012 Score=72.16 Aligned_cols=33 Identities=36% Similarity=0.476 Sum_probs=30.8
Q ss_pred cEEEECCCCchHHHHHHHhcCCCCeEEEecCCCC
Q psy1040 77 DFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGPD 110 (614)
Q Consensus 77 DvIVVGsG~aG~~~A~~Lae~~G~~VLlLEaG~~ 110 (614)
++||||||+||..+|.+|++. |++|+|+|++..
T Consensus 2 ~vvVIG~G~aG~~aA~~~~~~-g~~V~lie~~~~ 34 (458)
T PRK06912 2 KLVVIGGGPAGYVAAITAAQN-GKNVTLIDEADL 34 (458)
T ss_pred eEEEECCCHHHHHHHHHHHhC-CCcEEEEECCcc
Confidence 689999999999999999998 999999999754
No 258
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=96.66 E-value=0.0014 Score=70.12 Aligned_cols=34 Identities=35% Similarity=0.503 Sum_probs=31.7
Q ss_pred EEEECCCCchHHHHHHHhcCCC--CeEEEecCCCCCC
Q psy1040 78 FVVVGGGVAGPVVAGRLVENPN--WKVLLLEAGPDEP 112 (614)
Q Consensus 78 vIVVGsG~aG~~~A~~Lae~~G--~~VLlLEaG~~~~ 112 (614)
++|||||.+|+++|++|.++ + ..|.|+|++++.+
T Consensus 3 i~IiG~GiaGLsaAy~L~k~-~p~~~i~lfE~~~r~G 38 (444)
T COG1232 3 IAIIGGGIAGLSAAYRLQKA-GPDVEVTLFEADDRVG 38 (444)
T ss_pred EEEECCcHHHHHHHHHHHHh-CCCCcEEEEecCCCCC
Confidence 79999999999999999998 7 9999999998764
No 259
>PRK07846 mycothione reductase; Reviewed
Probab=96.66 E-value=0.0014 Score=71.34 Aligned_cols=32 Identities=22% Similarity=0.673 Sum_probs=28.2
Q ss_pred cccEEEECCCCchHHHHHHHhcCCCCeEEEecCCC
Q psy1040 75 EYDFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGP 109 (614)
Q Consensus 75 ~yDvIVVGsG~aG~~~A~~Lae~~G~~VLlLEaG~ 109 (614)
+||+||||+|++|..+|.++ . |+||+|+|++.
T Consensus 1 ~yD~vVIG~G~~g~~aa~~~--~-G~~V~lie~~~ 32 (451)
T PRK07846 1 HYDLIIIGTGSGNSILDERF--A-DKRIAIVEKGT 32 (451)
T ss_pred CCCEEEECCCHHHHHHHHHH--C-CCeEEEEeCCC
Confidence 49999999999999988774 4 99999999864
No 260
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=96.65 E-value=0.017 Score=60.94 Aligned_cols=53 Identities=26% Similarity=0.426 Sum_probs=40.4
Q ss_pred cchhhhcCCCeEEEcccEEEEEEEcCCCCeEEEEEEEeCCCCceEEEEeccEEEEccCCCChHHH
Q psy1040 275 FLRDKYKQDNLKVQLNAHVMKLNIDPKTKRALSVQFKDTNTNEIKTVKAKKEIILTAGAIGSPQL 339 (614)
Q Consensus 275 ~L~~~~~~~n~~I~~~~~V~~I~~d~~~~ra~GV~~~~~~~g~~~~v~A~k~VVlaaG~i~sp~L 339 (614)
+....+++.|++|++++.|++|.-+ +|.+.++ ++ +|.++ .||-|||.-.+|-+
T Consensus 214 ~a~~~L~~~GV~v~l~~~Vt~v~~~-------~v~~~~g--~~--~I~~~-tvvWaaGv~a~~~~ 266 (405)
T COG1252 214 YAERALEKLGVEVLLGTPVTEVTPD-------GVTLKDG--EE--EIPAD-TVVWAAGVRASPLL 266 (405)
T ss_pred HHHHHHHHCCCEEEcCCceEEECCC-------cEEEccC--Ce--eEecC-EEEEcCCCcCChhh
Confidence 4455667899999999999999654 5777665 22 79996 79999997666643
No 261
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=96.64 E-value=0.0017 Score=68.17 Aligned_cols=37 Identities=38% Similarity=0.562 Sum_probs=33.8
Q ss_pred cccEEEECCCCchHHHHHHHhcCCCCeEEEecCCCCCC
Q psy1040 75 EYDFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGPDEP 112 (614)
Q Consensus 75 ~yDvIVVGsG~aG~~~A~~Lae~~G~~VLlLEaG~~~~ 112 (614)
.-+++|||||.||+.+|..||+. |++|.|+|+-+..+
T Consensus 124 ~~svLVIGGGvAGitAAl~La~~-G~~v~LVEKepsiG 160 (622)
T COG1148 124 SKSVLVIGGGVAGITAALELADM-GFKVYLVEKEPSIG 160 (622)
T ss_pred ccceEEEcCcHHHHHHHHHHHHc-CCeEEEEecCCccc
Confidence 35799999999999999999999 99999999987754
No 262
>KOG1335|consensus
Probab=96.60 E-value=0.0021 Score=65.45 Aligned_cols=80 Identities=18% Similarity=0.397 Sum_probs=53.9
Q ss_pred hhcCCCeEEEcccEEEEEEEcCCCCeEEEEEEEeCCCCceEEEEeccEEEEccCCCChHHHHHHhCCCCchhhhhcCCCc
Q psy1040 279 KYKQDNLKVQLNAHVMKLNIDPKTKRALSVQFKDTNTNEIKTVKAKKEIILTAGAIGSPQLLMLSGVGPKSHLDELGIET 358 (614)
Q Consensus 279 ~~~~~n~~I~~~~~V~~I~~d~~~~ra~GV~~~~~~~g~~~~v~A~k~VVlaaG~i~sp~LLl~SGig~~~~l~~~gi~~ 358 (614)
.+...++..+++++|+....+.+ | -+-|++.+..+++..+++++ .+.+|.| ..| ...|+| |++.||..
T Consensus 261 ~L~kQgikF~l~tkv~~a~~~~d-g-~v~i~ve~ak~~k~~tle~D-vlLVsiG--RrP---~t~GLg----le~iGi~~ 328 (506)
T KOG1335|consen 261 VLQKQGIKFKLGTKVTSATRNGD-G-PVEIEVENAKTGKKETLECD-VLLVSIG--RRP---FTEGLG----LEKIGIEL 328 (506)
T ss_pred HHHhcCceeEeccEEEEeeccCC-C-ceEEEEEecCCCceeEEEee-EEEEEcc--Ccc---cccCCC----hhhccccc
Confidence 44568999999999999998753 4 44577777666888999998 7888999 334 345653 45566544
Q ss_pred --cccccccccccc
Q psy1040 359 --ISDLRVGYNLVH 370 (614)
Q Consensus 359 --~~dlpVG~nl~d 370 (614)
.-..+|+..++.
T Consensus 329 D~r~rv~v~~~f~t 342 (506)
T KOG1335|consen 329 DKRGRVIVNTRFQT 342 (506)
T ss_pred ccccceeccccccc
Confidence 112235555544
No 263
>PLN02612 phytoene desaturase
Probab=96.60 E-value=0.0031 Score=70.66 Aligned_cols=38 Identities=32% Similarity=0.386 Sum_probs=34.3
Q ss_pred CcccEEEECCCCchHHHHHHHhcCCCCeEEEecCCCCCC
Q psy1040 74 EEYDFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGPDEP 112 (614)
Q Consensus 74 ~~yDvIVVGsG~aG~~~A~~Lae~~G~~VLlLEaG~~~~ 112 (614)
...+|+|||+|.+|+++|++|+++ |++|+|+|+.+...
T Consensus 92 ~~~~v~iiG~G~~Gl~~a~~l~~~-g~~~~~~e~~~~~g 129 (567)
T PLN02612 92 KPLKVVIAGAGLAGLSTAKYLADA-GHKPILLEARDVLG 129 (567)
T ss_pred CCCCEEEECCCHHHHHHHHHHHhc-CCeEEEEecCCCCC
Confidence 357999999999999999999998 99999999987653
No 264
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=96.59 E-value=0.0017 Score=69.98 Aligned_cols=33 Identities=36% Similarity=0.661 Sum_probs=30.2
Q ss_pred cEEEECCCCchHHHHHHHhcCCC-CeEEEecCCCC
Q psy1040 77 DFVVVGGGVAGPVVAGRLVENPN-WKVLLLEAGPD 110 (614)
Q Consensus 77 DvIVVGsG~aG~~~A~~Lae~~G-~~VLlLEaG~~ 110 (614)
.|+|||||++|+++|..|+++ | .+|+|+||.+.
T Consensus 2 ~V~IiGgGiaGla~A~~L~~~-g~~~v~v~Er~~~ 35 (414)
T TIGR03219 2 RVAIIGGGIAGVALALNLCKH-SHLNVQLFEAAPA 35 (414)
T ss_pred eEEEECCCHHHHHHHHHHHhc-CCCCEEEEecCCc
Confidence 589999999999999999998 7 69999999754
No 265
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=96.55 E-value=0.0027 Score=51.14 Aligned_cols=33 Identities=36% Similarity=0.459 Sum_probs=31.0
Q ss_pred EEEECCCCchHHHHHHHhcCCCCeEEEecCCCCC
Q psy1040 78 FVVVGGGVAGPVVAGRLVENPNWKVLLLEAGPDE 111 (614)
Q Consensus 78 vIVVGsG~aG~~~A~~Lae~~G~~VLlLEaG~~~ 111 (614)
++|||||..|+-+|..|++. |.+|.|+|+.+..
T Consensus 2 vvViGgG~ig~E~A~~l~~~-g~~vtli~~~~~~ 34 (80)
T PF00070_consen 2 VVVIGGGFIGIELAEALAEL-GKEVTLIERSDRL 34 (80)
T ss_dssp EEEESSSHHHHHHHHHHHHT-TSEEEEEESSSSS
T ss_pred EEEECcCHHHHHHHHHHHHh-CcEEEEEeccchh
Confidence 78999999999999999998 9999999999763
No 266
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=96.49 E-value=0.0022 Score=73.51 Aligned_cols=38 Identities=39% Similarity=0.571 Sum_probs=34.7
Q ss_pred CcccEEEECCCCchHHHHHHHhcCCCCeEEEecCCCCCC
Q psy1040 74 EEYDFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGPDEP 112 (614)
Q Consensus 74 ~~yDvIVVGsG~aG~~~A~~Lae~~G~~VLlLEaG~~~~ 112 (614)
...+|||||||.+|+++|++|++. |++|+|+|+....+
T Consensus 237 ~~~~v~IiGaG~aGl~aA~~L~~~-g~~v~v~E~~~r~G 274 (808)
T PLN02328 237 EPANVVVVGAGLAGLVAARQLLSM-GFKVVVLEGRARPG 274 (808)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHC-CCcEEEEeccccCC
Confidence 468999999999999999999998 99999999987653
No 267
>KOG0685|consensus
Probab=96.46 E-value=0.0026 Score=66.84 Aligned_cols=40 Identities=38% Similarity=0.502 Sum_probs=34.4
Q ss_pred CcccEEEECCCCchHHHHHHHhcCCCCeEEEecCCCCCCC
Q psy1040 74 EEYDFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGPDEPT 113 (614)
Q Consensus 74 ~~yDvIVVGsG~aG~~~A~~Lae~~G~~VLlLEaG~~~~~ 113 (614)
.+.-+||||||.||+.+|.||-++....|+|+|+.++.+.
T Consensus 20 ~~~kIvIIGAG~AGLaAA~rLle~gf~~~~IlEa~dRIGG 59 (498)
T KOG0685|consen 20 GNAKIVIIGAGIAGLAAATRLLENGFIDVLILEASDRIGG 59 (498)
T ss_pred CCceEEEECCchHHHHHHHHHHHhCCceEEEEEeccccCc
Confidence 3457999999999999999999874568999999988753
No 268
>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function. This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....
Probab=96.38 E-value=0.0028 Score=67.76 Aligned_cols=40 Identities=28% Similarity=0.470 Sum_probs=31.9
Q ss_pred CCcccEEEECCCCchHHHHHHHhcCCCCeEEEecCCCCCCC
Q psy1040 73 QEEYDFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGPDEPT 113 (614)
Q Consensus 73 ~~~yDvIVVGsG~aG~~~A~~Lae~~G~~VLlLEaG~~~~~ 113 (614)
+++|||||+|.|..-|.+|..||.+ |+|||.|++.+..+.
T Consensus 2 ~~~yDviI~GTGl~esila~als~~-GkkVLhiD~n~yYGg 41 (438)
T PF00996_consen 2 DEEYDVIILGTGLTESILAAALSRS-GKKVLHIDRNDYYGG 41 (438)
T ss_dssp -SBESEEEE--SHHHHHHHHHHHHT-T--EEEE-SSSSSCG
T ss_pred CccceEEEECCCcHHHHHHHHHHhc-CCEEEecCCCCCcCC
Confidence 5689999999999999999999999 999999999998863
No 269
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=96.38 E-value=0.003 Score=73.86 Aligned_cols=37 Identities=24% Similarity=0.296 Sum_probs=33.8
Q ss_pred CcccEEEECCCCchHHHHHHHhcCCCCeEEEecCCCCC
Q psy1040 74 EEYDFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGPDE 111 (614)
Q Consensus 74 ~~yDvIVVGsG~aG~~~A~~Lae~~G~~VLlLEaG~~~ 111 (614)
...+|+|||||+||+++|+.|++. |++|+|+|+.+..
T Consensus 538 tgKkVaIIGgGPAGLsAA~~Lar~-G~~VtV~Ek~~~~ 574 (1019)
T PRK09853 538 SRKKVAVIGAGPAGLAAAYFLARA-GHPVTVFEREENA 574 (1019)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHc-CCeEEEEeccccc
Confidence 456999999999999999999999 9999999998664
No 270
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=96.37 E-value=0.0031 Score=68.92 Aligned_cols=38 Identities=29% Similarity=0.458 Sum_probs=34.3
Q ss_pred CCcccEEEECCCCchHHHHHHHhcCCCCeEEEecCCCCC
Q psy1040 73 QEEYDFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGPDE 111 (614)
Q Consensus 73 ~~~yDvIVVGsG~aG~~~A~~Lae~~G~~VLlLEaG~~~ 111 (614)
....+++|||||++|+.+|..|++. |++|+|+|+.+..
T Consensus 138 ~~~~~VvIIGgGpaGl~aA~~l~~~-g~~V~lie~~~~~ 175 (457)
T PRK11749 138 KTGKKVAVIGAGPAGLTAAHRLARK-GYDVTIFEARDKA 175 (457)
T ss_pred cCCCcEEEECCCHHHHHHHHHHHhC-CCeEEEEccCCCC
Confidence 3457999999999999999999998 9999999998754
No 271
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=96.34 E-value=0.0032 Score=73.14 Aligned_cols=37 Identities=30% Similarity=0.438 Sum_probs=33.5
Q ss_pred CcccEEEECCCCchHHHHHHHhcCCCCeEEEecCCCCC
Q psy1040 74 EEYDFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGPDE 111 (614)
Q Consensus 74 ~~yDvIVVGsG~aG~~~A~~Lae~~G~~VLlLEaG~~~ 111 (614)
...||+|||||+||+++|.+|++. |++|+|+|+.+..
T Consensus 430 ~~~~V~IIGaGpAGl~aA~~l~~~-G~~V~v~e~~~~~ 466 (752)
T PRK12778 430 NGKKVAVIGSGPAGLSFAGDLAKR-GYDVTVFEALHEI 466 (752)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHC-CCeEEEEecCCCC
Confidence 457999999999999999999999 9999999986543
No 272
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=96.26 E-value=0.0064 Score=69.36 Aligned_cols=37 Identities=22% Similarity=0.356 Sum_probs=33.9
Q ss_pred CcccEEEECCCCchHHHHHHHhcCCCCeEEEecCCCCC
Q psy1040 74 EEYDFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGPDE 111 (614)
Q Consensus 74 ~~yDvIVVGsG~aG~~~A~~Lae~~G~~VLlLEaG~~~ 111 (614)
...+++|||+|++|+.+|..|++. |++|+|+|+.+..
T Consensus 192 ~~k~VaIIGaGpAGl~aA~~La~~-G~~Vtv~e~~~~~ 228 (652)
T PRK12814 192 SGKKVAIIGAGPAGLTAAYYLLRK-GHDVTIFDANEQA 228 (652)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC-CCcEEEEecCCCC
Confidence 457999999999999999999998 9999999998764
No 273
>KOG3855|consensus
Probab=96.21 E-value=0.0039 Score=64.28 Aligned_cols=38 Identities=50% Similarity=0.802 Sum_probs=33.0
Q ss_pred CCcccEEEECCCCchHHHHHHHhcCC---CCeEEEecCCCC
Q psy1040 73 QEEYDFVVVGGGVAGPVVAGRLVENP---NWKVLLLEAGPD 110 (614)
Q Consensus 73 ~~~yDvIVVGsG~aG~~~A~~Lae~~---G~~VLlLEaG~~ 110 (614)
...|||||||||+.|.+.|..|..+| -+||+|+|.+..
T Consensus 34 ~~~~dVvIvGgGpvg~aLAa~l~snp~~~~~kv~Lld~~~s 74 (481)
T KOG3855|consen 34 TAKYDVVIVGGGPVGLALAAALGSNPPFQDKKVLLLDAGDS 74 (481)
T ss_pred cccCCEEEECCchHHHHHHHHhccCCccchheeeEEecccC
Confidence 34799999999999999999998763 479999999955
No 274
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=96.21 E-value=0.0037 Score=68.50 Aligned_cols=32 Identities=25% Similarity=0.310 Sum_probs=30.6
Q ss_pred cEEEECCCCchHHHHHHHhcCCCCeEEEecCCC
Q psy1040 77 DFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGP 109 (614)
Q Consensus 77 DvIVVGsG~aG~~~A~~Lae~~G~~VLlLEaG~ 109 (614)
|+||||+|++|..+|.+|++. |.+|+|+|++.
T Consensus 3 ~vvviG~G~~G~~~a~~~~~~-g~~v~~~e~~~ 34 (466)
T PRK07845 3 RIVIIGGGPGGYEAALVAAQL-GADVTVIERDG 34 (466)
T ss_pred cEEEECCCHHHHHHHHHHHhC-CCeEEEEEccC
Confidence 799999999999999999999 99999999875
No 275
>PLN02487 zeta-carotene desaturase
Probab=96.19 E-value=0.0044 Score=68.96 Aligned_cols=59 Identities=15% Similarity=0.152 Sum_probs=43.2
Q ss_pred hhcCCCeEEEcccEEEEEEEcCC-CC--eEEEEEEEeCCCCceEEEEeccEEEEccCCCChHHHH
Q psy1040 279 KYKQDNLKVQLNAHVMKLNIDPK-TK--RALSVQFKDTNTNEIKTVKAKKEIILTAGAIGSPQLL 340 (614)
Q Consensus 279 ~~~~~n~~I~~~~~V~~I~~d~~-~~--ra~GV~~~~~~~g~~~~v~A~k~VVlaaG~i~sp~LL 340 (614)
.+++.|.+|++++.|++|..+.+ ++ +++||++..+ +....+.|+ .||+|++.....+||
T Consensus 304 ~L~~~Gg~V~l~~~V~~I~~~~~~~g~~~v~gv~~~~~--~~~~~~~aD-~VV~A~p~~~~~~Ll 365 (569)
T PLN02487 304 YITDRGGRFHLRWGCREILYDKSPDGETYVTGLKVSKA--TEKEIVKAD-AYVAACDVPGIKRLL 365 (569)
T ss_pred HHHHcCCEEEeCCceEEEEEecCCCCceeEEEEEEecC--CCceEEECC-EEEECCCHHHHHHhC
Confidence 34678999999999999999742 22 5899998533 333457887 699999977555554
No 276
>PLN03000 amine oxidase
Probab=96.16 E-value=0.0066 Score=69.83 Aligned_cols=38 Identities=29% Similarity=0.458 Sum_probs=35.0
Q ss_pred CcccEEEECCCCchHHHHHHHhcCCCCeEEEecCCCCCC
Q psy1040 74 EEYDFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGPDEP 112 (614)
Q Consensus 74 ~~yDvIVVGsG~aG~~~A~~Lae~~G~~VLlLEaG~~~~ 112 (614)
...|++|||||.+|+.+|.+|++. |++|+|+|+.+...
T Consensus 183 ~~~~VvIIGaG~aGL~aA~~L~~~-G~~V~VlE~~~riG 220 (881)
T PLN03000 183 SKSSVVIVGAGLSGLAAARQLMRF-GFKVTVLEGRKRPG 220 (881)
T ss_pred CCCCEEEECccHHHHHHHHHHHHC-CCcEEEEEccCcCC
Confidence 458999999999999999999998 99999999988764
No 277
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=96.14 E-value=0.0039 Score=72.41 Aligned_cols=35 Identities=29% Similarity=0.330 Sum_probs=31.5
Q ss_pred cEEEECCCCchHHHHHHHhcC-CCCeEEEecCCCCC
Q psy1040 77 DFVVVGGGVAGPVVAGRLVEN-PNWKVLLLEAGPDE 111 (614)
Q Consensus 77 DvIVVGsG~aG~~~A~~Lae~-~G~~VLlLEaG~~~ 111 (614)
+|+|||||++|+++|..|++. +|++|+|+|+.+..
T Consensus 2 ~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~~ 37 (765)
T PRK08255 2 RIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRPY 37 (765)
T ss_pred eEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCCC
Confidence 689999999999999999986 58999999998753
No 278
>PLN02852 ferredoxin-NADP+ reductase
Probab=96.08 E-value=0.0061 Score=66.51 Aligned_cols=39 Identities=31% Similarity=0.389 Sum_probs=33.7
Q ss_pred CcccEEEECCCCchHHHHHHHhc-CCCCeEEEecCCCCCC
Q psy1040 74 EEYDFVVVGGGVAGPVVAGRLVE-NPNWKVLLLEAGPDEP 112 (614)
Q Consensus 74 ~~yDvIVVGsG~aG~~~A~~Lae-~~G~~VLlLEaG~~~~ 112 (614)
....|+|||||+||+.+|..|++ ..|++|.|+|+-+.+.
T Consensus 25 ~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~pg 64 (491)
T PLN02852 25 EPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTPF 64 (491)
T ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCCc
Confidence 34689999999999999999986 2399999999998753
No 279
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=96.06 E-value=0.0068 Score=63.84 Aligned_cols=36 Identities=25% Similarity=0.416 Sum_probs=33.2
Q ss_pred cccEEEECCCCchHHHHHHHhcCCCCeEEEecCCCCC
Q psy1040 75 EYDFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGPDE 111 (614)
Q Consensus 75 ~yDvIVVGsG~aG~~~A~~Lae~~G~~VLlLEaG~~~ 111 (614)
..+++|||+|++|+.+|.+|++. |++|+|+|+.+..
T Consensus 18 ~~~VvIIG~G~aGl~aA~~l~~~-g~~v~lie~~~~~ 53 (352)
T PRK12770 18 GKKVAIIGAGPAGLAAAGYLACL-GYEVHVYDKLPEP 53 (352)
T ss_pred CCEEEEECcCHHHHHHHHHHHHC-CCcEEEEeCCCCC
Confidence 46899999999999999999998 9999999998765
No 280
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=96.05 E-value=0.0087 Score=65.80 Aligned_cols=37 Identities=27% Similarity=0.298 Sum_probs=33.5
Q ss_pred CcccEEEECCCCchHHHHHHHhcCCCCeEEEecCCCCC
Q psy1040 74 EEYDFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGPDE 111 (614)
Q Consensus 74 ~~yDvIVVGsG~aG~~~A~~Lae~~G~~VLlLEaG~~~ 111 (614)
...+++|||+|++|+.+|..|++. |++|+|+|+.+..
T Consensus 142 ~~~~V~IIGaG~aGl~aA~~L~~~-g~~V~v~e~~~~~ 178 (485)
T TIGR01317 142 TGKKVAVVGSGPAGLAAADQLNRA-GHTVTVFEREDRC 178 (485)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHc-CCeEEEEecCCCC
Confidence 347999999999999999999998 9999999998653
No 281
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=95.87 E-value=0.012 Score=64.29 Aligned_cols=37 Identities=24% Similarity=0.389 Sum_probs=33.8
Q ss_pred CcccEEEECCCCchHHHHHHHhcCCCCeEEEecCCCCC
Q psy1040 74 EEYDFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGPDE 111 (614)
Q Consensus 74 ~~yDvIVVGsG~aG~~~A~~Lae~~G~~VLlLEaG~~~ 111 (614)
...+++|||+|++|+.+|..|++. |.+|+|+|+.+..
T Consensus 140 ~~~~V~IIG~GpaGl~aA~~l~~~-G~~V~i~e~~~~~ 176 (467)
T TIGR01318 140 TGKRVAVIGAGPAGLACADILARA-GVQVVVFDRHPEI 176 (467)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHc-CCeEEEEecCCCC
Confidence 457999999999999999999998 9999999998654
No 282
>PLN02976 amine oxidase
Probab=95.86 E-value=0.0074 Score=72.02 Aligned_cols=38 Identities=32% Similarity=0.435 Sum_probs=34.3
Q ss_pred CcccEEEECCCCchHHHHHHHhcCCCCeEEEecCCCCCC
Q psy1040 74 EEYDFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGPDEP 112 (614)
Q Consensus 74 ~~yDvIVVGsG~aG~~~A~~Lae~~G~~VLlLEaG~~~~ 112 (614)
..+|++|||+|++|+.+|++|++. |++|+|||+.+...
T Consensus 692 ~~~dV~IIGAG~AGLaAA~~L~~~-G~~V~VlEa~~~vG 729 (1713)
T PLN02976 692 DRKKIIVVGAGPAGLTAARHLQRQ-GFSVTVLEARSRIG 729 (1713)
T ss_pred CCCcEEEECchHHHHHHHHHHHHC-CCcEEEEeeccCCC
Confidence 458999999999999999999998 99999999976653
No 283
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=95.83 E-value=0.0076 Score=69.83 Aligned_cols=35 Identities=23% Similarity=0.332 Sum_probs=32.3
Q ss_pred CcccEEEECCCCchHHHHHHHhcCCCCeEEEecCCC
Q psy1040 74 EEYDFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGP 109 (614)
Q Consensus 74 ~~yDvIVVGsG~aG~~~A~~Lae~~G~~VLlLEaG~ 109 (614)
....|+|||||+||+++|++|++. |++|+|+|+.+
T Consensus 382 tgKKVaVVGaGPAGLsAA~~La~~-Gh~Vtv~E~~~ 416 (1028)
T PRK06567 382 TNYNILVTGLGPAGFSLSYYLLRS-GHNVTAIDGLK 416 (1028)
T ss_pred CCCeEEEECcCHHHHHHHHHHHhC-CCeEEEEcccc
Confidence 457899999999999999999998 99999999864
No 284
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=95.76 E-value=0.06 Score=58.87 Aligned_cols=33 Identities=30% Similarity=0.390 Sum_probs=29.2
Q ss_pred ccEEEECCCCchHHHHHHHhcCCCCeEEEecCCC
Q psy1040 76 YDFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGP 109 (614)
Q Consensus 76 yDvIVVGsG~aG~~~A~~Lae~~G~~VLlLEaG~ 109 (614)
-+++|||+|..|+-+|..|++. |.+|.|+|+++
T Consensus 171 ~~vvViGgG~~g~e~A~~l~~~-g~~Vtli~~~~ 203 (461)
T TIGR01350 171 ESLVIIGGGVIGIEFASIFASL-GSKVTVIEMLD 203 (461)
T ss_pred CeEEEECCCHHHHHHHHHHHHc-CCcEEEEEcCC
Confidence 3689999999999999999998 99999999774
No 285
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=95.70 E-value=0.093 Score=55.77 Aligned_cols=33 Identities=30% Similarity=0.472 Sum_probs=30.2
Q ss_pred cEEEECCCCchHHHHHHHhcCCCCeEEEecCCCC
Q psy1040 77 DFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGPD 110 (614)
Q Consensus 77 DvIVVGsG~aG~~~A~~Lae~~G~~VLlLEaG~~ 110 (614)
.++|||+|..|+-+|..|++. |.+|.|+|+++.
T Consensus 143 ~vvViGgG~~g~e~A~~L~~~-g~~Vtlv~~~~~ 175 (377)
T PRK04965 143 RVLVVGGGLIGTELAMDLCRA-GKAVTLVDNAAS 175 (377)
T ss_pred eEEEECCCHHHHHHHHHHHhc-CCeEEEEecCCc
Confidence 689999999999999999998 999999998743
No 286
>KOG1276|consensus
Probab=95.63 E-value=0.012 Score=61.00 Aligned_cols=39 Identities=33% Similarity=0.485 Sum_probs=32.9
Q ss_pred cccEEEECCCCchHHHHHHHhcC-CCCeEEEecCCCCCCC
Q psy1040 75 EYDFVVVGGGVAGPVVAGRLVEN-PNWKVLLLEAGPDEPT 113 (614)
Q Consensus 75 ~yDvIVVGsG~aG~~~A~~Lae~-~G~~VLlLEaG~~~~~ 113 (614)
.-+++|||+|.+|+++|++|++. +...|.|.|++++...
T Consensus 11 ~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~RvGG 50 (491)
T KOG1276|consen 11 GMTVAVVGGGISGLCAAYYLARLGPDVTITLFEASPRVGG 50 (491)
T ss_pred cceEEEECCchhHHHHHHHHHhcCCCceEEEEecCCcccc
Confidence 46999999999999999999998 3345677999988753
No 287
>PTZ00188 adrenodoxin reductase; Provisional
Probab=95.61 E-value=0.01 Score=64.03 Aligned_cols=37 Identities=19% Similarity=0.330 Sum_probs=32.0
Q ss_pred ccEEEECCCCchHHHHHHHhcCCCCeEEEecCCCCCC
Q psy1040 76 YDFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGPDEP 112 (614)
Q Consensus 76 yDvIVVGsG~aG~~~A~~Lae~~G~~VLlLEaG~~~~ 112 (614)
.-|+|||||+||+.+|.+|+...|.+|.|+|+-+.+.
T Consensus 40 krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~pg 76 (506)
T PTZ00188 40 FKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNPY 76 (506)
T ss_pred CEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCCc
Confidence 4599999999999999987643499999999998874
No 288
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=95.59 E-value=0.096 Score=57.33 Aligned_cols=54 Identities=17% Similarity=0.294 Sum_probs=37.5
Q ss_pred hcCCCeEEEcccEEEEEEEcCCCCeEEEEEEEeCCCCceEEEEeccEEEEccCCCChHHH
Q psy1040 280 YKQDNLKVQLNAHVMKLNIDPKTKRALSVQFKDTNTNEIKTVKAKKEIILTAGAIGSPQL 339 (614)
Q Consensus 280 ~~~~n~~I~~~~~V~~I~~d~~~~ra~GV~~~~~~~g~~~~v~A~k~VVlaaG~i~sp~L 339 (614)
+++.|+++++++.|++|..+ ++.+ .|++.++ |+..++.++ .||+|+|......+
T Consensus 223 l~~~gV~i~~~~~V~~i~~~--~~~v-~v~~~~g--g~~~~i~~D-~vi~a~G~~p~~~~ 276 (462)
T PRK06416 223 LKKRGIKIKTGAKAKKVEQT--DDGV-TVTLEDG--GKEETLEAD-YVLVAVGRRPNTEN 276 (462)
T ss_pred HHHcCCEEEeCCEEEEEEEe--CCEE-EEEEEeC--CeeEEEEeC-EEEEeeCCccCCCC
Confidence 34568999999999999765 3333 2444443 555678998 69999997655444
No 289
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=95.50 E-value=0.077 Score=58.11 Aligned_cols=33 Identities=24% Similarity=0.414 Sum_probs=28.0
Q ss_pred cEEEECCCCchHHHHHHHhcCCCCeEEEecCCCC
Q psy1040 77 DFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGPD 110 (614)
Q Consensus 77 DvIVVGsG~aG~~~A~~Lae~~G~~VLlLEaG~~ 110 (614)
.++|||+|..|+-+|..|++. |.+|.|+|+++.
T Consensus 168 ~vvIIGgG~~g~E~A~~l~~~-g~~Vtli~~~~~ 200 (463)
T TIGR02053 168 SLAVIGGGAIGVELAQAFARL-GSEVTILQRSDR 200 (463)
T ss_pred eEEEECCCHHHHHHHHHHHHc-CCcEEEEEcCCc
Confidence 688999999999999998887 889999987643
No 290
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=95.46 E-value=0.096 Score=57.55 Aligned_cols=54 Identities=19% Similarity=0.410 Sum_probs=38.2
Q ss_pred cCCCeEEEcccEEEEEEEcCCCCeEEEEEEEeCCCCceEEEEeccEEEEccCCCChHHH
Q psy1040 281 KQDNLKVQLNAHVMKLNIDPKTKRALSVQFKDTNTNEIKTVKAKKEIILTAGAIGSPQL 339 (614)
Q Consensus 281 ~~~n~~I~~~~~V~~I~~d~~~~ra~GV~~~~~~~g~~~~v~A~k~VVlaaG~i~sp~L 339 (614)
++.|++|++++.|++|..+ ++.+ .|++.+++ |+..++.++ .||+|+|.......
T Consensus 235 ~~~gi~i~~~~~v~~i~~~--~~~v-~v~~~~~~-g~~~~i~~D-~vl~a~G~~p~~~~ 288 (475)
T PRK06327 235 TKQGLDIHLGVKIGEIKTG--GKGV-SVAYTDAD-GEAQTLEVD-KLIVSIGRVPNTDG 288 (475)
T ss_pred HHcCcEEEeCcEEEEEEEc--CCEE-EEEEEeCC-CceeEEEcC-EEEEccCCccCCCC
Confidence 3468999999999999765 3333 35554432 555679998 69999997665543
No 291
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=95.41 E-value=0.1 Score=56.79 Aligned_cols=33 Identities=15% Similarity=0.233 Sum_probs=29.8
Q ss_pred ccEEEECCCCchHHHHHHHhcCCCCeEEEecCCC
Q psy1040 76 YDFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGP 109 (614)
Q Consensus 76 yDvIVVGsG~aG~~~A~~Lae~~G~~VLlLEaG~ 109 (614)
-.++|||+|..|+-+|..|++. |.+|.++|+++
T Consensus 150 ~~vvVvGgG~~g~e~A~~l~~~-g~~Vtli~~~~ 182 (444)
T PRK09564 150 KNIVIIGAGFIGLEAVEAAKHL-GKNVRIIQLED 182 (444)
T ss_pred CEEEEECCCHHHHHHHHHHHhc-CCcEEEEeCCc
Confidence 3689999999999999999998 99999998764
No 292
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=95.24 E-value=0.15 Score=55.90 Aligned_cols=55 Identities=13% Similarity=0.250 Sum_probs=37.7
Q ss_pred hcCCCeEEEcccEEEEEEEcCCCCeEEEEEEEeCCCCceEEEEeccEEEEccCCCChHHH
Q psy1040 280 YKQDNLKVQLNAHVMKLNIDPKTKRALSVQFKDTNTNEIKTVKAKKEIILTAGAIGSPQL 339 (614)
Q Consensus 280 ~~~~n~~I~~~~~V~~I~~d~~~~ra~GV~~~~~~~g~~~~v~A~k~VVlaaG~i~sp~L 339 (614)
+++.|++|++++.|+++.-+ ++.+ .|.+...+ |+..++.++ .||+|+|...+..+
T Consensus 223 l~~~gV~i~~~~~v~~i~~~--~~~~-~v~~~~~~-g~~~~i~~D-~vi~a~G~~pn~~~ 277 (466)
T PRK07818 223 YKKLGVKILTGTKVESIDDN--GSKV-TVTVSKKD-GKAQELEAD-KVLQAIGFAPRVEG 277 (466)
T ss_pred HHHCCCEEEECCEEEEEEEe--CCeE-EEEEEecC-CCeEEEEeC-EEEECcCcccCCCC
Confidence 34568999999999999754 3333 34444222 655679998 79999997655543
No 293
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=95.23 E-value=0.092 Score=61.34 Aligned_cols=56 Identities=23% Similarity=0.396 Sum_probs=41.2
Q ss_pred cCCCeEEEcccEEEEEEEcCCCCeEEEEEEEeCCCCceEEEEeccEEEEccCCCChHHHHHHhCC
Q psy1040 281 KQDNLKVQLNAHVMKLNIDPKTKRALSVQFKDTNTNEIKTVKAKKEIILTAGAIGSPQLLMLSGV 345 (614)
Q Consensus 281 ~~~n~~I~~~~~V~~I~~d~~~~ra~GV~~~~~~~g~~~~v~A~k~VVlaaG~i~sp~LLl~SGi 345 (614)
++.|++|++++.|++|.-+ +++.+|++.+ |+ ++.++ .||+|+|.-.+..|+..+|+
T Consensus 193 ~~~GV~v~~~~~v~~i~~~---~~~~~v~~~d---G~--~i~~D-~Vi~a~G~~Pn~~la~~~gl 248 (785)
T TIGR02374 193 EQKGLTFLLEKDTVEIVGA---TKADRIRFKD---GS--SLEAD-LIVMAAGIRPNDELAVSAGI 248 (785)
T ss_pred HHcCCEEEeCCceEEEEcC---CceEEEEECC---CC--EEEcC-EEEECCCCCcCcHHHHhcCC
Confidence 3457889999999888643 4677777754 33 68898 79999998777777666665
No 294
>PRK06370 mercuric reductase; Validated
Probab=95.20 E-value=0.14 Score=56.09 Aligned_cols=52 Identities=15% Similarity=0.365 Sum_probs=35.0
Q ss_pred cCCCeEEEcccEEEEEEEcCCCCeEEEEEEEeCCCCceEEEEeccEEEEccCCCChHH
Q psy1040 281 KQDNLKVQLNAHVMKLNIDPKTKRALSVQFKDTNTNEIKTVKAKKEIILTAGAIGSPQ 338 (614)
Q Consensus 281 ~~~n~~I~~~~~V~~I~~d~~~~ra~GV~~~~~~~g~~~~v~A~k~VVlaaG~i~sp~ 338 (614)
++.|++|++++.|++|..+ ++.+ .|.+... +...++.++ .||+|+|.-....
T Consensus 223 ~~~GV~i~~~~~V~~i~~~--~~~~-~v~~~~~--~~~~~i~~D-~Vi~A~G~~pn~~ 274 (463)
T PRK06370 223 EREGIDVRLNAECIRVERD--GDGI-AVGLDCN--GGAPEITGS-HILVAVGRVPNTD 274 (463)
T ss_pred HhCCCEEEeCCEEEEEEEc--CCEE-EEEEEeC--CCceEEEeC-EEEECcCCCcCCC
Confidence 4568999999999999765 2222 3444333 333468898 6999999665544
No 295
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=95.18 E-value=0.11 Score=60.92 Aligned_cols=58 Identities=12% Similarity=0.284 Sum_probs=42.3
Q ss_pred cCCCeEEEcccEEEEEEEcCCCCeEEEEEEEeCCCCceEEEEeccEEEEccCCCChHHHHHHhCC
Q psy1040 281 KQDNLKVQLNAHVMKLNIDPKTKRALSVQFKDTNTNEIKTVKAKKEIILTAGAIGSPQLLMLSGV 345 (614)
Q Consensus 281 ~~~n~~I~~~~~V~~I~~d~~~~ra~GV~~~~~~~g~~~~v~A~k~VVlaaG~i~sp~LLl~SGi 345 (614)
++.|++|++++.|++|.-+. .+.+..|.+.+ |+ ++.++ .||+|+|.-.+..|+..+|+
T Consensus 198 ~~~GV~v~~~~~v~~I~~~~-~~~~~~v~~~d---G~--~i~~D-~Vv~A~G~rPn~~L~~~~Gl 255 (847)
T PRK14989 198 ESMGVRVHTSKNTLEIVQEG-VEARKTMRFAD---GS--ELEVD-FIVFSTGIRPQDKLATQCGL 255 (847)
T ss_pred HHCCCEEEcCCeEEEEEecC-CCceEEEEECC---CC--EEEcC-EEEECCCcccCchHHhhcCc
Confidence 45678999999999997542 23455666644 33 68898 79999998877777767775
No 296
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=95.17 E-value=0.017 Score=64.83 Aligned_cols=37 Identities=35% Similarity=0.455 Sum_probs=33.3
Q ss_pred CcccEEEECCCCchHHHHHHHhcCCCCeEEEecCCCCC
Q psy1040 74 EEYDFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGPDE 111 (614)
Q Consensus 74 ~~yDvIVVGsG~aG~~~A~~Lae~~G~~VLlLEaG~~~ 111 (614)
..-+|+|||+|++|+.+|..|++. |.+|+|+|+.+..
T Consensus 136 ~g~~V~VIGaGpaGL~aA~~l~~~-G~~V~v~e~~~~~ 172 (564)
T PRK12771 136 TGKRVAVIGGGPAGLSAAYHLRRM-GHAVTIFEAGPKL 172 (564)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC-CCeEEEEecCCCC
Confidence 346899999999999999999998 9999999987654
No 297
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=95.14 E-value=0.22 Score=50.70 Aligned_cols=57 Identities=23% Similarity=0.276 Sum_probs=42.1
Q ss_pred CCeEEEcccEEEEEEEcCCCCeEEEEEEEeCCCCceEEEEeccEEEEccCCCChHHHHHHh
Q psy1040 283 DNLKVQLNAHVMKLNIDPKTKRALSVQFKDTNTNEIKTVKAKKEIILTAGAIGSPQLLMLS 343 (614)
Q Consensus 283 ~n~~I~~~~~V~~I~~d~~~~ra~GV~~~~~~~g~~~~v~A~k~VVlaaG~i~sp~LLl~S 343 (614)
.|+++++++.|+++..+ +++.+|++.+..+|+..++.++ .||+|+|...+..+|..+
T Consensus 190 ~gv~~~~~~~v~~i~~~---~~~~~v~~~~~~~g~~~~i~~D-~vi~a~G~~~~~~~l~~~ 246 (300)
T TIGR01292 190 PNIEFLWNSTVKEIVGD---NKVEGVKIKNTVTGEEEELKVD-GVFIAIGHEPNTELLKGL 246 (300)
T ss_pred CCeEEEeccEEEEEEcc---CcEEEEEEEecCCCceEEEEcc-EEEEeeCCCCChHHHHHh
Confidence 47889999999998754 3677787765333666789997 799999976666666544
No 298
>PRK13984 putative oxidoreductase; Provisional
Probab=95.07 E-value=0.021 Score=64.69 Aligned_cols=37 Identities=24% Similarity=0.291 Sum_probs=34.0
Q ss_pred CcccEEEECCCCchHHHHHHHhcCCCCeEEEecCCCCC
Q psy1040 74 EEYDFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGPDE 111 (614)
Q Consensus 74 ~~yDvIVVGsG~aG~~~A~~Lae~~G~~VLlLEaG~~~ 111 (614)
...+++|||+|++|+.+|..|++. |++|+|+|+.+..
T Consensus 282 ~~~~v~IIGaG~aGl~aA~~L~~~-G~~v~vie~~~~~ 318 (604)
T PRK13984 282 KNKKVAIVGSGPAGLSAAYFLATM-GYEVTVYESLSKP 318 (604)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHC-CCeEEEEecCCCC
Confidence 457899999999999999999998 9999999998764
No 299
>KOG2403|consensus
Probab=95.00 E-value=0.02 Score=61.16 Aligned_cols=35 Identities=37% Similarity=0.379 Sum_probs=31.8
Q ss_pred CCcccEEEECCCCchHHHHHHHhcCCCCeEEEecCC
Q psy1040 73 QEEYDFVVVGGGVAGPVVAGRLVENPNWKVLLLEAG 108 (614)
Q Consensus 73 ~~~yDvIVVGsG~aG~~~A~~Lae~~G~~VLlLEaG 108 (614)
+..||.+|||+|.||+-+|..|+|. |.+|.++-+-
T Consensus 53 ~~~~da~vvgaggAGlr~~~~lae~-g~~~a~itkl 87 (642)
T KOG2403|consen 53 DHTYDAVVVGAGGAGLRAARGLAEL-GEKTAVITKL 87 (642)
T ss_pred eeeceeEEEeccchhhhhhhhhhhc-CceEEEEecc
Confidence 4569999999999999999999999 9999998754
No 300
>PRK10262 thioredoxin reductase; Provisional
Probab=94.70 E-value=0.42 Score=49.45 Aligned_cols=32 Identities=25% Similarity=0.227 Sum_probs=29.8
Q ss_pred cEEEECCCCchHHHHHHHhcCCCCeEEEecCCC
Q psy1040 77 DFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGP 109 (614)
Q Consensus 77 DvIVVGsG~aG~~~A~~Lae~~G~~VLlLEaG~ 109 (614)
.++|||+|..|+-+|..|++. +.+|.++++.+
T Consensus 148 ~vvVvGgG~~g~e~A~~l~~~-~~~Vtlv~~~~ 179 (321)
T PRK10262 148 KVAVIGGGNTAVEEALYLSNI-ASEVHLIHRRD 179 (321)
T ss_pred EEEEECCCHHHHHHHHHHHhh-CCEEEEEEECC
Confidence 689999999999999999998 99999999874
No 301
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=94.68 E-value=0.03 Score=59.99 Aligned_cols=61 Identities=18% Similarity=0.318 Sum_probs=42.1
Q ss_pred cchhhhcCCCeEEEcccEEEEEEEcCCCCeEEEEEEEeCCCCceEEEEeccEEEEccCCCChHHHHHHhCC
Q psy1040 275 FLRDKYKQDNLKVQLNAHVMKLNIDPKTKRALSVQFKDTNTNEIKTVKAKKEIILTAGAIGSPQLLMLSGV 345 (614)
Q Consensus 275 ~L~~~~~~~n~~I~~~~~V~~I~~d~~~~ra~GV~~~~~~~g~~~~v~A~k~VVlaaG~i~sp~LLl~SGi 345 (614)
++....++.|+++++++.|+++..+ +.+ .|++.+ |+ ++.++ .||+++|......|+..+|+
T Consensus 191 ~l~~~l~~~GV~i~~~~~V~~i~~~---~~~-~v~l~~---g~--~i~aD-~Vv~a~G~~pn~~l~~~~gl 251 (396)
T PRK09754 191 YLLQRHQQAGVRILLNNAIEHVVDG---EKV-ELTLQS---GE--TLQAD-VVIYGIGISANDQLAREANL 251 (396)
T ss_pred HHHHHHHHCCCEEEeCCeeEEEEcC---CEE-EEEECC---CC--EEECC-EEEECCCCChhhHHHHhcCC
Confidence 3444456679999999999998642 222 344432 43 58887 79999998777777766665
No 302
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=94.39 E-value=0.033 Score=60.62 Aligned_cols=61 Identities=16% Similarity=0.296 Sum_probs=43.6
Q ss_pred cchhhhcCCCeEEEcccEEEEEEEcCCCCeEEEEEEEeCCCCceEEEEeccEEEEccCCCChHHHHHHhCC
Q psy1040 275 FLRDKYKQDNLKVQLNAHVMKLNIDPKTKRALSVQFKDTNTNEIKTVKAKKEIILTAGAIGSPQLLMLSGV 345 (614)
Q Consensus 275 ~L~~~~~~~n~~I~~~~~V~~I~~d~~~~ra~GV~~~~~~~g~~~~v~A~k~VVlaaG~i~sp~LLl~SGi 345 (614)
.+...+++.|++++++++|++|.- ++++.+|.. . +. ++.++ .||+|+|...+..+|..+|+
T Consensus 196 ~l~~~l~~~gI~v~~~~~v~~i~~---~~~~~~v~~--~--~~--~i~~d-~vi~a~G~~p~~~~l~~~gl 256 (444)
T PRK09564 196 VMEEELRENGVELHLNEFVKSLIG---EDKVEGVVT--D--KG--EYEAD-VVIVATGVKPNTEFLEDTGL 256 (444)
T ss_pred HHHHHHHHCCCEEEcCCEEEEEec---CCcEEEEEe--C--CC--EEEcC-EEEECcCCCcCHHHHHhcCc
Confidence 344455677899999999999953 345555543 2 22 58897 79999998777777777776
No 303
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=94.31 E-value=0.036 Score=60.21 Aligned_cols=58 Identities=19% Similarity=0.268 Sum_probs=41.4
Q ss_pred cchhhhcCCCeEEEcccEEEEEEEcCCCCeEEEEEEEeCCCCceEEEEeccEEEEccCCCChHHHHHHhCC
Q psy1040 275 FLRDKYKQDNLKVQLNAHVMKLNIDPKTKRALSVQFKDTNTNEIKTVKAKKEIILTAGAIGSPQLLMLSGV 345 (614)
Q Consensus 275 ~L~~~~~~~n~~I~~~~~V~~I~~d~~~~ra~GV~~~~~~~g~~~~v~A~k~VVlaaG~i~sp~LLl~SGi 345 (614)
.+...+++.|+++++++.|++|.- . .|.+.+ |+ .+.++ .||+|+|....+.+|..+|+
T Consensus 194 ~l~~~l~~~gI~i~~~~~v~~i~~----~---~v~~~~---g~--~~~~D-~vl~a~G~~pn~~~l~~~gl 251 (438)
T PRK13512 194 PILDELDKREIPYRLNEEIDAING----N---EVTFKS---GK--VEHYD-MIIEGVGTHPNSKFIESSNI 251 (438)
T ss_pred HHHHHHHhcCCEEEECCeEEEEeC----C---EEEECC---CC--EEEeC-EEEECcCCCcChHHHHhcCc
Confidence 344455678999999999999841 2 344433 43 57887 69999998877777777765
No 304
>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=94.09 E-value=0.041 Score=55.29 Aligned_cols=33 Identities=30% Similarity=0.466 Sum_probs=30.2
Q ss_pred cEEEECCCCchHHHHHHHhcCCCCeEEEecCCCC
Q psy1040 77 DFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGPD 110 (614)
Q Consensus 77 DvIVVGsG~aG~~~A~~Lae~~G~~VLlLEaG~~ 110 (614)
-+.|||+|.||+-+|+++|++ |.+|.|.|--+.
T Consensus 5 ~i~VIGaGLAGSEAAwqiA~~-Gv~V~L~EMRp~ 37 (439)
T COG1206 5 PINVIGAGLAGSEAAWQIAKR-GVPVILYEMRPV 37 (439)
T ss_pred ceEEEcccccccHHHHHHHHc-CCcEEEEEcccc
Confidence 478999999999999999999 999999996654
No 305
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=93.92 E-value=0.057 Score=58.40 Aligned_cols=38 Identities=18% Similarity=0.320 Sum_probs=33.0
Q ss_pred CCcccEEEECCCCchHHHHHHHhcCCCCeEEEecCCCCC
Q psy1040 73 QEEYDFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGPDE 111 (614)
Q Consensus 73 ~~~yDvIVVGsG~aG~~~A~~Lae~~G~~VLlLEaG~~~ 111 (614)
....++||||+|.||+.+|.+|... +.+|+|||+.+..
T Consensus 8 ~~~~~vVIvGgG~aGl~~a~~L~~~-~~~ItlI~~~~~~ 45 (424)
T PTZ00318 8 LKKPNVVVLGTGWAGAYFVRNLDPK-KYNITVISPRNHM 45 (424)
T ss_pred CCCCeEEEECCCHHHHHHHHHhCcC-CCeEEEEcCCCCc
Confidence 3457999999999999999999876 8999999987764
No 306
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=93.88 E-value=0.057 Score=58.41 Aligned_cols=36 Identities=25% Similarity=0.301 Sum_probs=33.4
Q ss_pred ccEEEECCCCchHHHHHHHhcCCCCeEEEecCCCCCC
Q psy1040 76 YDFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGPDEP 112 (614)
Q Consensus 76 yDvIVVGsG~aG~~~A~~Lae~~G~~VLlLEaG~~~~ 112 (614)
-.|.|||||++|+.+|..|+++ |++|++.|+-+...
T Consensus 124 ~~VaviGaGPAGl~~a~~L~~~-G~~Vtv~e~~~~~G 159 (457)
T COG0493 124 KKVAVIGAGPAGLAAADDLSRA-GHDVTVFERVALDG 159 (457)
T ss_pred CEEEEECCCchHhhhHHHHHhC-CCeEEEeCCcCCCc
Confidence 6899999999999999999999 99999999987754
No 307
>PRK12831 putative oxidoreductase; Provisional
Probab=93.66 E-value=0.85 Score=49.92 Aligned_cols=31 Identities=23% Similarity=0.212 Sum_probs=28.7
Q ss_pred cEEEECCCCchHHHHHHHhcCCCCeEEEecCC
Q psy1040 77 DFVVVGGGVAGPVVAGRLVENPNWKVLLLEAG 108 (614)
Q Consensus 77 DvIVVGsG~aG~~~A~~Lae~~G~~VLlLEaG 108 (614)
.|+|||+|..|+-+|..|++. |.+|.|+++.
T Consensus 283 ~VvVIGgG~va~d~A~~l~r~-Ga~Vtlv~r~ 313 (464)
T PRK12831 283 KVAVVGGGNVAMDAARTALRL-GAEVHIVYRR 313 (464)
T ss_pred eEEEECCcHHHHHHHHHHHHc-CCEEEEEeec
Confidence 799999999999999999998 9999999865
No 308
>KOG1800|consensus
Probab=93.49 E-value=0.088 Score=54.07 Aligned_cols=36 Identities=33% Similarity=0.409 Sum_probs=32.3
Q ss_pred ccEEEECCCCchHHHHHHHhcC-CCCeEEEecCCCCC
Q psy1040 76 YDFVVVGGGVAGPVVAGRLVEN-PNWKVLLLEAGPDE 111 (614)
Q Consensus 76 yDvIVVGsG~aG~~~A~~Lae~-~G~~VLlLEaG~~~ 111 (614)
.-|+|||||+||.-+|.+|-++ ++.+|-|.|+-+.+
T Consensus 21 p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvP 57 (468)
T KOG1800|consen 21 PRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVP 57 (468)
T ss_pred ceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCcc
Confidence 4799999999999999999884 68999999998765
No 309
>KOG4405|consensus
Probab=93.42 E-value=0.087 Score=54.42 Aligned_cols=39 Identities=28% Similarity=0.428 Sum_probs=36.3
Q ss_pred CCcccEEEECCCCchHHHHHHHhcCCCCeEEEecCCCCCC
Q psy1040 73 QEEYDFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGPDEP 112 (614)
Q Consensus 73 ~~~yDvIVVGsG~aG~~~A~~Lae~~G~~VLlLEaG~~~~ 112 (614)
+.+||+||||.|.-=+++|..-++. |.+||=|+..++.+
T Consensus 6 P~~fDvVViGTGlpESilAAAcSrs-G~sVLHlDsn~yYG 44 (547)
T KOG4405|consen 6 PEEFDVVVIGTGLPESILAAACSRS-GSSVLHLDSNEYYG 44 (547)
T ss_pred chhccEEEEcCCCcHHHHHHHhhhc-CCceEeccCccccC
Confidence 5689999999999999999999999 99999999988774
No 310
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=93.35 E-value=0.42 Score=52.64 Aligned_cols=56 Identities=14% Similarity=0.209 Sum_probs=37.4
Q ss_pred hhcCCCeEEEcccEEEEEEEcCCCCeEEEEEEEeCCCCceEEEEeccEEEEccCCCChHHHH
Q psy1040 279 KYKQDNLKVQLNAHVMKLNIDPKTKRALSVQFKDTNTNEIKTVKAKKEIILTAGAIGSPQLL 340 (614)
Q Consensus 279 ~~~~~n~~I~~~~~V~~I~~d~~~~ra~GV~~~~~~~g~~~~v~A~k~VVlaaG~i~sp~LL 340 (614)
.+++.|++|++++.+++|... ++. ..|++.++ +...++.++ .||+|.|-..++.+|
T Consensus 229 ~L~~~gV~i~~~~~v~~v~~~--~~~-~~v~~~~~--~~~~~i~~D-~vl~a~G~~pn~~~l 284 (484)
T TIGR01438 229 HMEEHGVKFKRQFVPIKVEQI--EAK-VKVTFTDS--TNGIEEEYD-TVLLAIGRDACTRKL 284 (484)
T ss_pred HHHHcCCEEEeCceEEEEEEc--CCe-EEEEEecC--CcceEEEeC-EEEEEecCCcCCCcC
Confidence 344568999999999998754 233 23554433 223468898 799999977666554
No 311
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=93.31 E-value=0.083 Score=55.80 Aligned_cols=34 Identities=26% Similarity=0.515 Sum_probs=29.6
Q ss_pred EEEECCCCchHHHHHHHhcC--CCCeEEEecCCCCC
Q psy1040 78 FVVVGGGVAGPVVAGRLVEN--PNWKVLLLEAGPDE 111 (614)
Q Consensus 78 vIVVGsG~aG~~~A~~Lae~--~G~~VLlLEaG~~~ 111 (614)
+||||||.||..+|.+|.++ ++.+|+|+|+.+..
T Consensus 2 vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~~ 37 (364)
T TIGR03169 2 LVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTT 37 (364)
T ss_pred EEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCCC
Confidence 89999999999999999643 47899999988764
No 312
>KOG1439|consensus
Probab=93.02 E-value=0.06 Score=55.62 Aligned_cols=39 Identities=31% Similarity=0.497 Sum_probs=36.4
Q ss_pred CCcccEEEECCCCchHHHHHHHhcCCCCeEEEecCCCCCC
Q psy1040 73 QEEYDFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGPDEP 112 (614)
Q Consensus 73 ~~~yDvIVVGsG~aG~~~A~~Lae~~G~~VLlLEaG~~~~ 112 (614)
+++|||||+|.|..=|+++..||.+ |.+||.++|.+..+
T Consensus 2 deeyDvivlGTgl~ecilS~~Ls~~-gkkVLhiDrN~yYG 40 (440)
T KOG1439|consen 2 DEEYDVIVLGTGLTECILSGALSVD-GKKVLHIDRNDYYG 40 (440)
T ss_pred CCceeEEEEcCCchhheeeeeeeec-CcEEEEEeCCCCCC
Confidence 4569999999999999999999999 99999999998875
No 313
>COG5044 MRS6 RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=92.82 E-value=0.12 Score=52.86 Aligned_cols=38 Identities=18% Similarity=0.338 Sum_probs=35.8
Q ss_pred CcccEEEECCCCchHHHHHHHhcCCCCeEEEecCCCCCC
Q psy1040 74 EEYDFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGPDEP 112 (614)
Q Consensus 74 ~~yDvIVVGsG~aG~~~A~~Lae~~G~~VLlLEaG~~~~ 112 (614)
..|||||+|.|.-=|+.+.+||-+ |.+||+|++.+..+
T Consensus 5 ~~yDvii~GTgl~esils~~Ls~~-~k~VlhiD~Nd~YG 42 (434)
T COG5044 5 TLYDVIILGTGLRESILSAALSWD-GKNVLHIDKNDYYG 42 (434)
T ss_pred ccccEEEecccHHHHHHHHHhhhc-CceEEEEeCCCccC
Confidence 479999999999999999999999 99999999998875
No 314
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=92.62 E-value=0.11 Score=55.10 Aligned_cols=62 Identities=13% Similarity=0.281 Sum_probs=44.3
Q ss_pred chhhhcCCCeEEEcccEEEEEEEcCCCCeEEEEEEEeCCCCceEEEEeccEEEEccCCCChHHHHHHhCCC
Q psy1040 276 LRDKYKQDNLKVQLNAHVMKLNIDPKTKRALSVQFKDTNTNEIKTVKAKKEIILTAGAIGSPQLLMLSGVG 346 (614)
Q Consensus 276 L~~~~~~~n~~I~~~~~V~~I~~d~~~~ra~GV~~~~~~~g~~~~v~A~k~VVlaaG~i~sp~LLl~SGig 346 (614)
+...+++.|+++++++.|++|..+ ++. ..|++.+ |+ ++.++ .||+|+|....+.++..+|+.
T Consensus 189 l~~~l~~~gV~i~~~~~v~~i~~~--~~~-~~v~~~~---g~--~i~~D-~vI~a~G~~p~~~l~~~~gl~ 250 (377)
T PRK04965 189 LQHRLTEMGVHLLLKSQLQGLEKT--DSG-IRATLDS---GR--SIEVD-AVIAAAGLRPNTALARRAGLA 250 (377)
T ss_pred HHHHHHhCCCEEEECCeEEEEEcc--CCE-EEEEEcC---Cc--EEECC-EEEECcCCCcchHHHHHCCCC
Confidence 444556779999999999999765 333 2355433 33 68897 799999987777777777763
No 315
>KOG3851|consensus
Probab=92.39 E-value=0.12 Score=51.79 Aligned_cols=38 Identities=26% Similarity=0.467 Sum_probs=32.1
Q ss_pred CCcccEEEECCCCchHHHHHHHhcCCC-CeEEEecCCCC
Q psy1040 73 QEEYDFVVVGGGVAGPVVAGRLVENPN-WKVLLLEAGPD 110 (614)
Q Consensus 73 ~~~yDvIVVGsG~aG~~~A~~Lae~~G-~~VLlLEaG~~ 110 (614)
..+|.++|||+|++|+.+|.+++++-| -+|.+||-..+
T Consensus 37 ~~h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~e~ 75 (446)
T KOG3851|consen 37 RKHFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPAED 75 (446)
T ss_pred ccceEEEEEcCCcchhHHHHHHHhhcCCCceEEecchhh
Confidence 457999999999999999999998733 48999996654
No 316
>KOG0399|consensus
Probab=92.06 E-value=0.18 Score=58.33 Aligned_cols=38 Identities=21% Similarity=0.274 Sum_probs=35.0
Q ss_pred CcccEEEECCCCchHHHHHHHhcCCCCeEEEecCCCCCC
Q psy1040 74 EEYDFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGPDEP 112 (614)
Q Consensus 74 ~~yDvIVVGsG~aG~~~A~~Lae~~G~~VLlLEaG~~~~ 112 (614)
.-.-|-|||||++|+.+|..|-+. |+.|+|.||.++..
T Consensus 1784 tg~~vaiigsgpaglaaadqlnk~-gh~v~vyer~dr~g 1821 (2142)
T KOG0399|consen 1784 TGKRVAIIGSGPAGLAAADQLNKA-GHTVTVYERSDRVG 1821 (2142)
T ss_pred cCcEEEEEccCchhhhHHHHHhhc-CcEEEEEEecCCcC
Confidence 457899999999999999999999 99999999998875
No 317
>KOG2755|consensus
Probab=92.05 E-value=0.11 Score=50.60 Aligned_cols=33 Identities=42% Similarity=0.712 Sum_probs=29.3
Q ss_pred EEEECCCCchHHHHHHHhcC-CCCeEEEecCCCC
Q psy1040 78 FVVVGGGVAGPVVAGRLVEN-PNWKVLLLEAGPD 110 (614)
Q Consensus 78 vIVVGsG~aG~~~A~~Lae~-~G~~VLlLEaG~~ 110 (614)
|||||||+||.++|..||.. |...||||-+.+.
T Consensus 2 fivvgggiagvscaeqla~~~psa~illitass~ 35 (334)
T KOG2755|consen 2 FIVVGGGIAGVSCAEQLAQLEPSAEILLITASSF 35 (334)
T ss_pred eEEEcCccccccHHHHHHhhCCCCcEEEEeccHH
Confidence 79999999999999999975 6789999987754
No 318
>KOG0404|consensus
Probab=91.84 E-value=0.14 Score=48.85 Aligned_cols=32 Identities=28% Similarity=0.316 Sum_probs=29.4
Q ss_pred ccEEEECCCCchHHHHHHHhcCCCCeEEEecCC
Q psy1040 76 YDFVVVGGGVAGPVVAGRLVENPNWKVLLLEAG 108 (614)
Q Consensus 76 yDvIVVGsG~aG~~~A~~Lae~~G~~VLlLEaG 108 (614)
-.++|||||+|+-.+|.+++++ .+|-||+|-+
T Consensus 9 e~v~IiGSGPAa~tAAiYaara-elkPllfEG~ 40 (322)
T KOG0404|consen 9 ENVVIIGSGPAAHTAAIYAARA-ELKPLLFEGM 40 (322)
T ss_pred eeEEEEccCchHHHHHHHHhhc-ccCceEEeee
Confidence 3699999999999999999999 9999999954
No 319
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=91.63 E-value=0.15 Score=54.37 Aligned_cols=35 Identities=37% Similarity=0.379 Sum_probs=32.9
Q ss_pred ccEEEECCCCchHHHHHHHhcCCCCeEEEecCCCCC
Q psy1040 76 YDFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGPDE 111 (614)
Q Consensus 76 yDvIVVGsG~aG~~~A~~Lae~~G~~VLlLEaG~~~ 111 (614)
-+++|||+|..|+-+|..|++. |.+|+|+|+.+..
T Consensus 137 ~~v~vvG~G~~gle~A~~~~~~-G~~v~l~e~~~~~ 171 (415)
T COG0446 137 KDVVVVGAGPIGLEAAEAAAKR-GKKVTLIEAADRL 171 (415)
T ss_pred CeEEEECCcHHHHHHHHHHHHc-CCeEEEEEccccc
Confidence 5899999999999999999999 9999999998764
No 320
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=91.45 E-value=0.19 Score=45.69 Aligned_cols=31 Identities=29% Similarity=0.628 Sum_probs=28.9
Q ss_pred EEEECCCCchHHHHHHHhcCCCCeEEEecCCC
Q psy1040 78 FVVVGGGVAGPVVAGRLVENPNWKVLLLEAGP 109 (614)
Q Consensus 78 vIVVGsG~aG~~~A~~Lae~~G~~VLlLEaG~ 109 (614)
+.|+|+|..|+..|.+|+++ |.+|.++-+..
T Consensus 1 I~I~G~GaiG~~~a~~L~~~-g~~V~l~~r~~ 31 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQA-GHDVTLVSRSP 31 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHT-TCEEEEEESHH
T ss_pred CEEECcCHHHHHHHHHHHHC-CCceEEEEccc
Confidence 57999999999999999997 99999999875
No 321
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=91.34 E-value=0.19 Score=49.27 Aligned_cols=33 Identities=27% Similarity=0.574 Sum_probs=30.7
Q ss_pred cEEEECCCCchHHHHHHHhcCCCCeEEEecCCCC
Q psy1040 77 DFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGPD 110 (614)
Q Consensus 77 DvIVVGsG~aG~~~A~~Lae~~G~~VLlLEaG~~ 110 (614)
.+||||+|-.|..+|..|++. |..|+++|+-+.
T Consensus 2 ~iiIiG~G~vG~~va~~L~~~-g~~Vv~Id~d~~ 34 (225)
T COG0569 2 KIIIIGAGRVGRSVARELSEE-GHNVVLIDRDEE 34 (225)
T ss_pred EEEEECCcHHHHHHHHHHHhC-CCceEEEEcCHH
Confidence 489999999999999999999 999999998754
No 322
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=91.33 E-value=0.18 Score=46.39 Aligned_cols=31 Identities=29% Similarity=0.429 Sum_probs=28.7
Q ss_pred EEEECCCCchHHHHHHHhcCCCCeEEEecCCC
Q psy1040 78 FVVVGGGVAGPVVAGRLVENPNWKVLLLEAGP 109 (614)
Q Consensus 78 vIVVGsG~aG~~~A~~Lae~~G~~VLlLEaG~ 109 (614)
+.|+|||..|.++|..|+++ |.+|.|..+-+
T Consensus 2 I~ViGaG~~G~AlA~~la~~-g~~V~l~~~~~ 32 (157)
T PF01210_consen 2 IAVIGAGNWGTALAALLADN-GHEVTLWGRDE 32 (157)
T ss_dssp EEEESSSHHHHHHHHHHHHC-TEEEEEETSCH
T ss_pred EEEECcCHHHHHHHHHHHHc-CCEEEEEeccH
Confidence 67999999999999999999 99999998753
No 323
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=90.42 E-value=0.28 Score=49.22 Aligned_cols=34 Identities=29% Similarity=0.363 Sum_probs=30.3
Q ss_pred cccEEEECCCCchHHHHHHHhcCCCCeEEEecCCC
Q psy1040 75 EYDFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGP 109 (614)
Q Consensus 75 ~yDvIVVGsG~aG~~~A~~Lae~~G~~VLlLEaG~ 109 (614)
.-+|+|+|+|.+|.-+|.-+.-- |.+|.+||...
T Consensus 168 ~~kv~iiGGGvvgtnaAkiA~gl-gA~Vtild~n~ 201 (371)
T COG0686 168 PAKVVVLGGGVVGTNAAKIAIGL-GADVTILDLNI 201 (371)
T ss_pred CccEEEECCccccchHHHHHhcc-CCeeEEEecCH
Confidence 36899999999999999988887 99999999763
No 324
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=90.11 E-value=0.61 Score=49.23 Aligned_cols=88 Identities=14% Similarity=0.180 Sum_probs=55.1
Q ss_pred HHHHHHHHHcCCCcC-CCCCCCcceeEEeeccccCCcccccccccchhhhcCCCeEEEcccEEEEEEEcCCCCeEEEEEE
Q psy1040 232 EDIIKAGKELGYASG-DFNGANQIGVNFAQVMVDNGVRSSTPRMFLRDKYKQDNLKVQLNAHVMKLNIDPKTKRALSVQF 310 (614)
Q Consensus 232 ~~~~~a~~~~G~~~~-d~~~~~~~g~~~~~~~~~~g~r~s~~~~~L~~~~~~~n~~I~~~~~V~~I~~d~~~~ra~GV~~ 310 (614)
..+++.++++|++.. +-++ ..++ ...+.+.....|...+++.|++|++++.|++| + ++. .+|.+
T Consensus 57 ~d~~~fF~~~Gi~~~~e~~g-----rvfP-----~S~~A~sVv~~L~~~l~~~gV~i~~~~~V~~i--~--~~~-~~v~~ 121 (376)
T TIGR03862 57 VALQDWARGLGIETFVGSSG-----RVFP-----VEMKAAPLLRAWLKRLAEQGVQFHTRHRWIGW--Q--GGT-LRFET 121 (376)
T ss_pred HHHHHHHHHCCCceEECCCC-----EECC-----CCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEE--e--CCc-EEEEE
Confidence 456667778999764 2222 2121 11233333344555667899999999999999 3 222 45554
Q ss_pred EeCCCCceEEEEeccEEEEccCCCChHHH
Q psy1040 311 KDTNTNEIKTVKAKKEIILTAGAIGSPQL 339 (614)
Q Consensus 311 ~~~~~g~~~~v~A~k~VVlaaG~i~sp~L 339 (614)
... + ..++|+ .||||+|+...|++
T Consensus 122 ~~~--~--~~~~a~-~vIlAtGG~s~p~~ 145 (376)
T TIGR03862 122 PDG--Q--STIEAD-AVVLALGGASWSQL 145 (376)
T ss_pred CCC--c--eEEecC-EEEEcCCCcccccc
Confidence 322 1 258897 69999999877754
No 325
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=89.61 E-value=0.32 Score=45.83 Aligned_cols=31 Identities=26% Similarity=0.538 Sum_probs=26.9
Q ss_pred EEEECCCCchHHHHHHHhcCCCCeEEEecCCC
Q psy1040 78 FVVVGGGVAGPVVAGRLVENPNWKVLLLEAGP 109 (614)
Q Consensus 78 vIVVGsG~aG~~~A~~Lae~~G~~VLlLEaG~ 109 (614)
|.|||+|..|..+|..++.+ |++|.|++..+
T Consensus 2 V~ViGaG~mG~~iA~~~a~~-G~~V~l~d~~~ 32 (180)
T PF02737_consen 2 VAVIGAGTMGRGIAALFARA-GYEVTLYDRSP 32 (180)
T ss_dssp EEEES-SHHHHHHHHHHHHT-TSEEEEE-SSH
T ss_pred EEEEcCCHHHHHHHHHHHhC-CCcEEEEECCh
Confidence 67999999999999999999 99999999753
No 326
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=89.49 E-value=0.33 Score=51.91 Aligned_cols=34 Identities=26% Similarity=0.409 Sum_probs=31.4
Q ss_pred cEEEECCCCchHHHHHHHhcCCCCeEEEecCCCCC
Q psy1040 77 DFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGPDE 111 (614)
Q Consensus 77 DvIVVGsG~aG~~~A~~Lae~~G~~VLlLEaG~~~ 111 (614)
.++|||+|..|+-+|..|++. |.+|.|+|+++..
T Consensus 146 ~vvViGgG~ig~E~A~~l~~~-g~~Vtlv~~~~~~ 179 (396)
T PRK09754 146 SVVIVGAGTIGLELAASATQR-RCKVTVIELAATV 179 (396)
T ss_pred eEEEECCCHHHHHHHHHHHHc-CCeEEEEecCCcc
Confidence 699999999999999999998 9999999998653
No 327
>KOG1336|consensus
Probab=89.05 E-value=1.7 Score=46.29 Aligned_cols=56 Identities=23% Similarity=0.319 Sum_probs=45.2
Q ss_pred hcCCCeEEEcccEEEEEEEcCCCCeEEEEEEEeCCCCceEEEEeccEEEEccCCCChHHHHHH
Q psy1040 280 YKQDNLKVQLNAHVMKLNIDPKTKRALSVQFKDTNTNEIKTVKAKKEIILTAGAIGSPQLLML 342 (614)
Q Consensus 280 ~~~~n~~I~~~~~V~~I~~d~~~~ra~GV~~~~~~~g~~~~v~A~k~VVlaaG~i~sp~LLl~ 342 (614)
.++.+++++.++.+..+..++ .|+++-|.+.++ .++.|+ .||+..|+--...++..
T Consensus 265 ~e~kgVk~~~~t~~s~l~~~~-~Gev~~V~l~dg-----~~l~ad-lvv~GiG~~p~t~~~~~ 320 (478)
T KOG1336|consen 265 YENKGVKFYLGTVVSSLEGNS-DGEVSEVKLKDG-----KTLEAD-LVVVGIGIKPNTSFLEK 320 (478)
T ss_pred HHhcCeEEEEecceeecccCC-CCcEEEEEeccC-----CEeccC-eEEEeeccccccccccc
Confidence 346789999999999998876 489999998876 389998 79999998766666554
No 328
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=88.72 E-value=0.37 Score=52.85 Aligned_cols=33 Identities=36% Similarity=0.502 Sum_probs=31.0
Q ss_pred cEEEECCCCchHHHHHHHhcCCCCeEEEecCCCC
Q psy1040 77 DFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGPD 110 (614)
Q Consensus 77 DvIVVGsG~aG~~~A~~Lae~~G~~VLlLEaG~~ 110 (614)
.++|||+|.+|+-+|..|++. |.+|.|+|+++.
T Consensus 182 ~vvIIGgG~~G~E~A~~l~~~-g~~Vtli~~~~~ 214 (472)
T PRK05976 182 SLVIVGGGVIGLEWASMLADF-GVEVTVVEAADR 214 (472)
T ss_pred EEEEECCCHHHHHHHHHHHHc-CCeEEEEEecCc
Confidence 689999999999999999998 999999999865
No 329
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=88.58 E-value=0.4 Score=49.35 Aligned_cols=32 Identities=25% Similarity=0.381 Sum_probs=30.0
Q ss_pred cEEEECCCCchHHHHHHHhcCCCCeEEEecCCC
Q psy1040 77 DFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGP 109 (614)
Q Consensus 77 DvIVVGsG~aG~~~A~~Lae~~G~~VLlLEaG~ 109 (614)
.+.|||+|+.|+..|.+|++. |.+|.++.|+.
T Consensus 4 ~I~IiGaGaiG~~~a~~L~~~-G~~V~lv~r~~ 35 (305)
T PRK05708 4 TWHILGAGSLGSLWACRLARA-GLPVRLILRDR 35 (305)
T ss_pred eEEEECCCHHHHHHHHHHHhC-CCCeEEEEech
Confidence 589999999999999999998 99999999974
No 330
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=88.14 E-value=0.46 Score=51.59 Aligned_cols=33 Identities=30% Similarity=0.414 Sum_probs=30.8
Q ss_pred cEEEECCCCchHHHHHHHhcCCCCeEEEecCCCC
Q psy1040 77 DFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGPD 110 (614)
Q Consensus 77 DvIVVGsG~aG~~~A~~Lae~~G~~VLlLEaG~~ 110 (614)
.++|||+|.+|+-+|..|++. |.+|.|+|+++.
T Consensus 159 ~vvIIGgG~~g~e~A~~l~~~-g~~Vtli~~~~~ 191 (438)
T PRK07251 159 RLGIIGGGNIGLEFAGLYNKL-GSKVTVLDAAST 191 (438)
T ss_pred eEEEECCCHHHHHHHHHHHHc-CCeEEEEecCCc
Confidence 599999999999999999998 999999999865
No 331
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=88.09 E-value=0.53 Score=44.54 Aligned_cols=32 Identities=25% Similarity=0.412 Sum_probs=25.7
Q ss_pred EEEECCCCchHHHHHHHhcCCCCeEEEecCCCC
Q psy1040 78 FVVVGGGVAGPVVAGRLVENPNWKVLLLEAGPD 110 (614)
Q Consensus 78 vIVVGsG~aG~~~A~~Lae~~G~~VLlLEaG~~ 110 (614)
+.|||.|..|+++|..||++ |++|+.+|..+.
T Consensus 3 I~ViGlGyvGl~~A~~lA~~-G~~V~g~D~~~~ 34 (185)
T PF03721_consen 3 IAVIGLGYVGLPLAAALAEK-GHQVIGVDIDEE 34 (185)
T ss_dssp EEEE--STTHHHHHHHHHHT-TSEEEEE-S-HH
T ss_pred EEEECCCcchHHHHHHHHhC-CCEEEEEeCChH
Confidence 67999999999999999999 999999997643
No 332
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=87.61 E-value=0.56 Score=44.66 Aligned_cols=34 Identities=32% Similarity=0.361 Sum_probs=28.0
Q ss_pred ccEEEECCCCchHHHHHHHhcCCCCeEEEecCCCC
Q psy1040 76 YDFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGPD 110 (614)
Q Consensus 76 yDvIVVGsG~aG~~~A~~Lae~~G~~VLlLEaG~~ 110 (614)
-.|+|||+|.++.-+|..|++. |.+|.++=|.+.
T Consensus 168 k~V~VVG~G~SA~d~a~~l~~~-g~~V~~~~R~~~ 201 (203)
T PF13738_consen 168 KRVVVVGGGNSAVDIAYALAKA-GKSVTLVTRSPI 201 (203)
T ss_dssp SEEEEE--SHHHHHHHHHHTTT-CSEEEEEESS--
T ss_pred CcEEEEcChHHHHHHHHHHHhh-CCEEEEEecCCC
Confidence 4699999999999999999999 999999988754
No 333
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=87.61 E-value=0.53 Score=51.47 Aligned_cols=33 Identities=33% Similarity=0.510 Sum_probs=30.8
Q ss_pred cEEEECCCCchHHHHHHHhcCCCCeEEEecCCCC
Q psy1040 77 DFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGPD 110 (614)
Q Consensus 77 DvIVVGsG~aG~~~A~~Lae~~G~~VLlLEaG~~ 110 (614)
.++|||+|..|+-+|..|++. |.+|.|+|+++.
T Consensus 172 ~vvIIGgG~iG~E~A~~l~~~-g~~Vtli~~~~~ 204 (458)
T PRK06912 172 SLLIVGGGVIGCEFASIYSRL-GTKVTIVEMAPQ 204 (458)
T ss_pred cEEEECCCHHHHHHHHHHHHc-CCeEEEEecCCC
Confidence 699999999999999999998 999999999865
No 334
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=87.54 E-value=0.36 Score=51.17 Aligned_cols=36 Identities=44% Similarity=0.754 Sum_probs=30.3
Q ss_pred ccEEEECCCCchHHHHHHHhcCC------------CCeEEEecCCCCC
Q psy1040 76 YDFVVVGGGVAGPVVAGRLVENP------------NWKVLLLEAGPDE 111 (614)
Q Consensus 76 yDvIVVGsG~aG~~~A~~Lae~~------------G~~VLlLEaG~~~ 111 (614)
-+++|||||+.|.-+|.+|++.- ..+|.|+|+|+..
T Consensus 156 lti~IvGgG~TGVElAgeL~~~~~~l~~~~~~~~~~~~V~LVea~p~I 203 (405)
T COG1252 156 LTIVIVGGGPTGVELAGELAERLHRLLKKFRVDPSELRVILVEAGPRI 203 (405)
T ss_pred eEEEEECCChhHHHHHHHHHHHHHHHhhhhcCCccccEEEEEccCchh
Confidence 57999999999999999988630 1499999999874
No 335
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=87.33 E-value=0.51 Score=55.24 Aligned_cols=34 Identities=21% Similarity=0.455 Sum_probs=29.4
Q ss_pred EEEECCCCchHHHHHHHhcC--CCCeEEEecCCCCC
Q psy1040 78 FVVVGGGVAGPVVAGRLVEN--PNWKVLLLEAGPDE 111 (614)
Q Consensus 78 vIVVGsG~aG~~~A~~Lae~--~G~~VLlLEaG~~~ 111 (614)
+||||+|+||+.+|.+|.+. .+++|+|+|+.+..
T Consensus 1 iVIIG~G~AG~~aa~~l~~~~~~~~~Itvi~~e~~~ 36 (785)
T TIGR02374 1 LVLVGNGMAGHRCIEEVLKLNRHMFEITIFGEEPHP 36 (785)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCCeEEEEeCCCCC
Confidence 58999999999999988764 36799999998875
No 336
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=87.00 E-value=0.56 Score=51.47 Aligned_cols=33 Identities=21% Similarity=0.270 Sum_probs=30.9
Q ss_pred cEEEECCCCchHHHHHHHhcCCCCeEEEecCCCC
Q psy1040 77 DFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGPD 110 (614)
Q Consensus 77 DvIVVGsG~aG~~~A~~Lae~~G~~VLlLEaG~~ 110 (614)
.++|||+|..|+-+|..|++. |.+|.|||+++.
T Consensus 176 ~vvIiGgG~iG~E~A~~l~~~-G~~Vtlv~~~~~ 208 (471)
T PRK06467 176 RLLVMGGGIIGLEMGTVYHRL-GSEVDVVEMFDQ 208 (471)
T ss_pred eEEEECCCHHHHHHHHHHHHc-CCCEEEEecCCC
Confidence 689999999999999999998 999999999865
No 337
>PRK07846 mycothione reductase; Reviewed
Probab=86.92 E-value=0.59 Score=50.94 Aligned_cols=34 Identities=21% Similarity=0.294 Sum_probs=31.3
Q ss_pred ccEEEECCCCchHHHHHHHhcCCCCeEEEecCCCC
Q psy1040 76 YDFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGPD 110 (614)
Q Consensus 76 yDvIVVGsG~aG~~~A~~Lae~~G~~VLlLEaG~~ 110 (614)
-.++|||+|..|+-+|..|++. |.+|.|+|+++.
T Consensus 167 ~~vvIIGgG~iG~E~A~~l~~~-G~~Vtli~~~~~ 200 (451)
T PRK07846 167 ESLVIVGGGFIAAEFAHVFSAL-GVRVTVVNRSGR 200 (451)
T ss_pred CeEEEECCCHHHHHHHHHHHHc-CCeEEEEEcCCc
Confidence 3699999999999999999998 999999999864
No 338
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=86.91 E-value=0.58 Score=51.00 Aligned_cols=33 Identities=24% Similarity=0.224 Sum_probs=30.9
Q ss_pred cEEEECCCCchHHHHHHHhcCCCCeEEEecCCCC
Q psy1040 77 DFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGPD 110 (614)
Q Consensus 77 DvIVVGsG~aG~~~A~~Lae~~G~~VLlLEaG~~ 110 (614)
.++|||+|..|+-+|..|++. |.+|.|+|+++.
T Consensus 168 ~vvIIGgG~iG~E~A~~l~~~-g~~Vtli~~~~~ 200 (450)
T TIGR01421 168 RVVIVGAGYIAVELAGVLHGL-GSETHLVIRHER 200 (450)
T ss_pred eEEEECCCHHHHHHHHHHHHc-CCcEEEEecCCC
Confidence 689999999999999999998 999999999865
No 339
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=86.82 E-value=0.62 Score=48.12 Aligned_cols=32 Identities=19% Similarity=0.322 Sum_probs=29.9
Q ss_pred cEEEECCCCchHHHHHHHhcCCCCeEEEecCCC
Q psy1040 77 DFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGP 109 (614)
Q Consensus 77 DvIVVGsG~aG~~~A~~Lae~~G~~VLlLEaG~ 109 (614)
.+.|||+|..|+..|.+|+++ |.+|.++-++.
T Consensus 7 ~I~IiG~GaiG~~lA~~L~~~-g~~V~~~~r~~ 38 (313)
T PRK06249 7 RIGIIGTGAIGGFYGAMLARA-GFDVHFLLRSD 38 (313)
T ss_pred EEEEECCCHHHHHHHHHHHHC-CCeEEEEEeCC
Confidence 599999999999999999998 99999998874
No 340
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=86.66 E-value=0.64 Score=54.62 Aligned_cols=36 Identities=17% Similarity=0.457 Sum_probs=31.0
Q ss_pred cEEEECCCCchHHHHHHHhcC---CCCeEEEecCCCCCC
Q psy1040 77 DFVVVGGGVAGPVVAGRLVEN---PNWKVLLLEAGPDEP 112 (614)
Q Consensus 77 DvIVVGsG~aG~~~A~~Lae~---~G~~VLlLEaG~~~~ 112 (614)
.+||||+|+||+.+|.+|.+. .+++|+|+++.+...
T Consensus 5 kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~~~~ 43 (847)
T PRK14989 5 RLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEPRIA 43 (847)
T ss_pred cEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCCCCc
Confidence 699999999999999999753 368999999988753
No 341
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=86.11 E-value=0.77 Score=49.10 Aligned_cols=36 Identities=25% Similarity=0.611 Sum_probs=29.8
Q ss_pred ccEEEECCCCchHHHHHHHhcCC--CCeEEEecCCCCC
Q psy1040 76 YDFVVVGGGVAGPVVAGRLVENP--NWKVLLLEAGPDE 111 (614)
Q Consensus 76 yDvIVVGsG~aG~~~A~~Lae~~--G~~VLlLEaG~~~ 111 (614)
++|.|||+|++|..+|.+|.+.+ ..+|.|+|.-+..
T Consensus 2 ~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~ 39 (474)
T COG4529 2 FKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNF 39 (474)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCCCCceEEecccccc
Confidence 68999999999999999998752 2239999987654
No 342
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=86.01 E-value=0.73 Score=50.48 Aligned_cols=33 Identities=24% Similarity=0.268 Sum_probs=30.6
Q ss_pred cEEEECCCCchHHHHHHHhcCCCCeEEEecCCCC
Q psy1040 77 DFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGPD 110 (614)
Q Consensus 77 DvIVVGsG~aG~~~A~~Lae~~G~~VLlLEaG~~ 110 (614)
.++|||+|..|+-+|..|++. |.+|.|+|+++.
T Consensus 176 ~vvIIGgG~ig~E~A~~l~~~-G~~Vtlie~~~~ 208 (466)
T PRK06115 176 HLVVIGAGVIGLELGSVWRRL-GAQVTVVEYLDR 208 (466)
T ss_pred eEEEECCCHHHHHHHHHHHHc-CCeEEEEeCCCC
Confidence 589999999999999999998 999999999865
No 343
>PLN02487 zeta-carotene desaturase
Probab=85.78 E-value=1.2 Score=49.86 Aligned_cols=37 Identities=24% Similarity=0.392 Sum_probs=34.1
Q ss_pred cccEEEECCCCchHHHHHHHhcCCCCeEEEecCCCCCC
Q psy1040 75 EYDFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGPDEP 112 (614)
Q Consensus 75 ~yDvIVVGsG~aG~~~A~~Lae~~G~~VLlLEaG~~~~ 112 (614)
..+++|||+|.+|+++|++|++. |++|+|+|+.+...
T Consensus 75 ~~~v~iiG~G~~Gl~~a~~L~~~-g~~v~i~E~~~~~g 111 (569)
T PLN02487 75 KLKVAIIGAGLAGMSTAVELLDQ-GHEVDIYESRPFIG 111 (569)
T ss_pred CCeEEEECCCHHHHHHHHHHHhC-CCeeEEEecCCCCC
Confidence 46999999999999999999999 99999999987764
No 344
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=85.76 E-value=0.67 Score=47.72 Aligned_cols=32 Identities=25% Similarity=0.428 Sum_probs=29.8
Q ss_pred cEEEECCCCchHHHHHHHhcCCCCeEEEecCCC
Q psy1040 77 DFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGP 109 (614)
Q Consensus 77 DvIVVGsG~aG~~~A~~Lae~~G~~VLlLEaG~ 109 (614)
.+.|||+|..|+..|..|+++ |++|.++++.+
T Consensus 4 ~V~VIG~G~mG~~iA~~la~~-G~~V~v~d~~~ 35 (308)
T PRK06129 4 SVAIIGAGLIGRAWAIVFARA-GHEVRLWDADP 35 (308)
T ss_pred EEEEECccHHHHHHHHHHHHC-CCeeEEEeCCH
Confidence 588999999999999999999 99999999764
No 345
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=85.70 E-value=0.83 Score=39.26 Aligned_cols=32 Identities=28% Similarity=0.561 Sum_probs=28.3
Q ss_pred EEEECCCCchHHHHHHHhcCCCCeEEEecCCCC
Q psy1040 78 FVVVGGGVAGPVVAGRLVENPNWKVLLLEAGPD 110 (614)
Q Consensus 78 vIVVGsG~aG~~~A~~Lae~~G~~VLlLEaG~~ 110 (614)
|||+|.|..|..+|..|.+. +++|+++|.-+.
T Consensus 1 vvI~G~g~~~~~i~~~L~~~-~~~vvvid~d~~ 32 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEG-GIDVVVIDRDPE 32 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHT-TSEEEEEESSHH
T ss_pred eEEEcCCHHHHHHHHHHHhC-CCEEEEEECCcH
Confidence 69999999999999999997 899999998743
No 346
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=85.68 E-value=0.51 Score=50.32 Aligned_cols=44 Identities=20% Similarity=0.289 Sum_probs=30.7
Q ss_pred cCCCeEEEcccEEEEEEEcCCCCeEEEEEEEeCCCCceEEEEeccEEEEccCC
Q psy1040 281 KQDNLKVQLNAHVMKLNIDPKTKRALSVQFKDTNTNEIKTVKAKKEIILTAGA 333 (614)
Q Consensus 281 ~~~n~~I~~~~~V~~I~~d~~~~ra~GV~~~~~~~g~~~~v~A~k~VVlaaG~ 333 (614)
+..+.+|+++++|++|..+ +++++ |.+.++ + ++.|+ .||+|+..
T Consensus 220 ~~~g~~i~l~~~V~~I~~~--~~~v~-v~~~~g---~--~~~ad-~VI~a~p~ 263 (450)
T PF01593_consen 220 EELGGEIRLNTPVTRIERE--DGGVT-VTTEDG---E--TIEAD-AVISAVPP 263 (450)
T ss_dssp HHHGGGEESSEEEEEEEEE--SSEEE-EEETTS---S--EEEES-EEEE-S-H
T ss_pred hhcCceeecCCcceecccc--ccccc-cccccc---e--EEecc-eeeecCch
Confidence 4445699999999999998 45554 444443 3 88997 69998873
No 347
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=85.47 E-value=0.89 Score=49.29 Aligned_cols=34 Identities=32% Similarity=0.438 Sum_probs=31.9
Q ss_pred cEEEECCCCchHHHHHHHhcCCCCeEEEecCCCCC
Q psy1040 77 DFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGPDE 111 (614)
Q Consensus 77 DvIVVGsG~aG~~~A~~Lae~~G~~VLlLEaG~~~ 111 (614)
-++|||||..|+-.|.-+++- |.+|.|||+++..
T Consensus 175 ~lvIiGgG~IGlE~a~~~~~L-G~~VTiie~~~~i 208 (454)
T COG1249 175 SLVIVGGGYIGLEFASVFAAL-GSKVTVVERGDRI 208 (454)
T ss_pred EEEEECCCHHHHHHHHHHHHc-CCcEEEEecCCCC
Confidence 489999999999999999998 9999999999874
No 348
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=85.39 E-value=0.79 Score=46.92 Aligned_cols=30 Identities=20% Similarity=0.426 Sum_probs=28.2
Q ss_pred EEEECCCCchHHHHHHHhcCCCCeEEEecCC
Q psy1040 78 FVVVGGGVAGPVVAGRLVENPNWKVLLLEAG 108 (614)
Q Consensus 78 vIVVGsG~aG~~~A~~Lae~~G~~VLlLEaG 108 (614)
+.|||+|..|+..|..|+++ |.+|.++.+.
T Consensus 3 I~IiG~G~~G~~~a~~L~~~-g~~V~~~~r~ 32 (304)
T PRK06522 3 IAILGAGAIGGLFGAALAQA-GHDVTLVARR 32 (304)
T ss_pred EEEECCCHHHHHHHHHHHhC-CCeEEEEECC
Confidence 78999999999999999998 9999999974
No 349
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=85.38 E-value=0.78 Score=49.61 Aligned_cols=33 Identities=30% Similarity=0.470 Sum_probs=30.6
Q ss_pred cEEEECCCCchHHHHHHHhcCCCCeEEEecCCCC
Q psy1040 77 DFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGPD 110 (614)
Q Consensus 77 DvIVVGsG~aG~~~A~~Lae~~G~~VLlLEaG~~ 110 (614)
.++|||+|..|+-+|..|++. |.+|.++++++.
T Consensus 139 ~vvViGgG~~g~e~A~~l~~~-g~~Vtli~~~~~ 171 (427)
T TIGR03385 139 NVVIIGGGYIGIEMAEALRER-GKNVTLIHRSER 171 (427)
T ss_pred eEEEECCCHHHHHHHHHHHhC-CCcEEEEECCcc
Confidence 699999999999999999998 999999998854
No 350
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=85.25 E-value=0.77 Score=47.09 Aligned_cols=29 Identities=38% Similarity=0.606 Sum_probs=27.9
Q ss_pred EEEECCCCchHHHHHHHhcCCCCeEEEecC
Q psy1040 78 FVVVGGGVAGPVVAGRLVENPNWKVLLLEA 107 (614)
Q Consensus 78 vIVVGsG~aG~~~A~~Lae~~G~~VLlLEa 107 (614)
+.|||+|..|+..|..|+++ |.+|.++.+
T Consensus 3 I~IiG~G~iG~~~a~~L~~~-g~~V~~~~r 31 (305)
T PRK12921 3 IAVVGAGAVGGTFGGRLLEA-GRDVTFLVR 31 (305)
T ss_pred EEEECCCHHHHHHHHHHHHC-CCceEEEec
Confidence 78999999999999999999 999999998
No 351
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=85.16 E-value=0.79 Score=49.78 Aligned_cols=33 Identities=24% Similarity=0.277 Sum_probs=30.8
Q ss_pred cEEEECCCCchHHHHHHHhcCCCCeEEEecCCCC
Q psy1040 77 DFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGPD 110 (614)
Q Consensus 77 DvIVVGsG~aG~~~A~~Lae~~G~~VLlLEaG~~ 110 (614)
.++|||+|..|+-+|..|++. |.+|.|+|+++.
T Consensus 150 ~vvViGgG~ig~E~A~~l~~~-g~~Vtli~~~~~ 182 (438)
T PRK13512 150 KALVVGAGYISLEVLENLYER-GLHPTLIHRSDK 182 (438)
T ss_pred EEEEECCCHHHHHHHHHHHhC-CCcEEEEecccc
Confidence 689999999999999999998 999999999865
No 352
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=84.79 E-value=0.88 Score=49.72 Aligned_cols=33 Identities=24% Similarity=0.338 Sum_probs=30.9
Q ss_pred cEEEECCCCchHHHHHHHhcCCCCeEEEecCCCC
Q psy1040 77 DFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGPD 110 (614)
Q Consensus 77 DvIVVGsG~aG~~~A~~Lae~~G~~VLlLEaG~~ 110 (614)
.++|||+|..|+-+|..|++. |.+|.|+|+++.
T Consensus 177 ~v~IiGgG~~g~E~A~~l~~~-g~~Vtli~~~~~ 209 (461)
T PRK05249 177 SLIIYGAGVIGCEYASIFAAL-GVKVTLINTRDR 209 (461)
T ss_pred eEEEECCCHHHHHHHHHHHHc-CCeEEEEecCCC
Confidence 589999999999999999998 999999999865
No 353
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=84.72 E-value=0.87 Score=50.11 Aligned_cols=33 Identities=36% Similarity=0.501 Sum_probs=30.1
Q ss_pred cEEEECCCCchHHHHHHHhcCCCCeEEEecCCCC
Q psy1040 77 DFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGPD 110 (614)
Q Consensus 77 DvIVVGsG~aG~~~A~~Lae~~G~~VLlLEaG~~ 110 (614)
.++|||+|.+|+.+|..|++. |.+|.++|+.+.
T Consensus 18 ~v~viG~G~~G~~~A~~L~~~-G~~V~~~d~~~~ 50 (480)
T PRK01438 18 RVVVAGLGVSGFAAADALLEL-GARVTVVDDGDD 50 (480)
T ss_pred EEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCch
Confidence 699999999999999999998 999999997653
No 354
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=84.47 E-value=0.92 Score=49.58 Aligned_cols=33 Identities=24% Similarity=0.395 Sum_probs=30.1
Q ss_pred EEEECCCCchHHHHHHHhcCCCCeEEEecCCCCC
Q psy1040 78 FVVVGGGVAGPVVAGRLVENPNWKVLLLEAGPDE 111 (614)
Q Consensus 78 vIVVGsG~aG~~~A~~Lae~~G~~VLlLEaG~~~ 111 (614)
+.|||.|.+|.++|..|.+. |++|++.|+....
T Consensus 3 v~viG~G~sG~s~a~~l~~~-G~~V~~~D~~~~~ 35 (459)
T PRK02705 3 AHVIGLGRSGIAAARLLKAQ-GWEVVVSDRNDSP 35 (459)
T ss_pred EEEEccCHHHHHHHHHHHHC-CCEEEEECCCCch
Confidence 78999999999999999998 9999999987553
No 355
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=83.94 E-value=0.99 Score=45.94 Aligned_cols=32 Identities=22% Similarity=0.377 Sum_probs=29.1
Q ss_pred cEEEECCCCchHHHHHHHhcCCCCeEEEecCCC
Q psy1040 77 DFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGP 109 (614)
Q Consensus 77 DvIVVGsG~aG~~~A~~Lae~~G~~VLlLEaG~ 109 (614)
-+.|||+|..|..+|..|+++ |.+|.++++.+
T Consensus 5 kIaViGaG~mG~~iA~~la~~-G~~V~l~d~~~ 36 (287)
T PRK08293 5 NVTVAGAGVLGSQIAFQTAFH-GFDVTIYDISD 36 (287)
T ss_pred EEEEECCCHHHHHHHHHHHhc-CCeEEEEeCCH
Confidence 388999999999999999998 99999999653
No 356
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=83.89 E-value=0.99 Score=49.32 Aligned_cols=33 Identities=33% Similarity=0.511 Sum_probs=30.8
Q ss_pred cEEEECCCCchHHHHHHHhcCCCCeEEEecCCCC
Q psy1040 77 DFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGPD 110 (614)
Q Consensus 77 DvIVVGsG~aG~~~A~~Lae~~G~~VLlLEaG~~ 110 (614)
.++|||+|..|+-+|..|++. |.+|.|+|+++.
T Consensus 171 ~v~VIGgG~~g~E~A~~l~~~-g~~Vtli~~~~~ 203 (460)
T PRK06292 171 SLAVIGGGVIGLELGQALSRL-GVKVTVFERGDR 203 (460)
T ss_pred eEEEECCCHHHHHHHHHHHHc-CCcEEEEecCCC
Confidence 689999999999999999998 999999999865
No 357
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=83.89 E-value=0.99 Score=49.23 Aligned_cols=34 Identities=21% Similarity=0.307 Sum_probs=31.1
Q ss_pred ccEEEECCCCchHHHHHHHhcCCCCeEEEecCCCC
Q psy1040 76 YDFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGPD 110 (614)
Q Consensus 76 yDvIVVGsG~aG~~~A~~Lae~~G~~VLlLEaG~~ 110 (614)
-.++|||+|..|+-+|..|++. |.+|.|+|+++.
T Consensus 170 k~vvVIGgG~ig~E~A~~l~~~-G~~Vtli~~~~~ 203 (452)
T TIGR03452 170 ESLVIVGGGYIAAEFAHVFSAL-GTRVTIVNRSTK 203 (452)
T ss_pred CcEEEECCCHHHHHHHHHHHhC-CCcEEEEEccCc
Confidence 3699999999999999999998 999999998754
No 358
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=83.61 E-value=1.1 Score=46.30 Aligned_cols=31 Identities=26% Similarity=0.531 Sum_probs=28.9
Q ss_pred EEEECCCCchHHHHHHHhcCCCCeEEEecCCC
Q psy1040 78 FVVVGGGVAGPVVAGRLVENPNWKVLLLEAGP 109 (614)
Q Consensus 78 vIVVGsG~aG~~~A~~Lae~~G~~VLlLEaG~ 109 (614)
+.|||+|..|+..|..++.+ |++|.+.+.-+
T Consensus 10 VaVIGaG~MG~giA~~~a~a-G~~V~l~D~~~ 40 (321)
T PRK07066 10 FAAIGSGVIGSGWVARALAH-GLDVVAWDPAP 40 (321)
T ss_pred EEEECcCHHHHHHHHHHHhC-CCeEEEEeCCH
Confidence 88999999999999999998 99999999764
No 359
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=83.47 E-value=1 Score=45.92 Aligned_cols=31 Identities=29% Similarity=0.455 Sum_probs=28.9
Q ss_pred EEEECCCCchHHHHHHHhcCCCCeEEEecCCC
Q psy1040 78 FVVVGGGVAGPVVAGRLVENPNWKVLLLEAGP 109 (614)
Q Consensus 78 vIVVGsG~aG~~~A~~Lae~~G~~VLlLEaG~ 109 (614)
+.|||+|..|..+|..|+++ |++|.++++.+
T Consensus 4 V~VIG~G~mG~~iA~~la~~-G~~V~~~d~~~ 34 (288)
T PRK09260 4 LVVVGAGVMGRGIAYVFAVS-GFQTTLVDIKQ 34 (288)
T ss_pred EEEECccHHHHHHHHHHHhC-CCcEEEEeCCH
Confidence 78999999999999999999 99999998764
No 360
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=83.34 E-value=1.6 Score=45.70 Aligned_cols=39 Identities=33% Similarity=0.384 Sum_probs=34.5
Q ss_pred CCcccEEEECCCCchHHHHHHHhcCCCCeEEEecCCCCC
Q psy1040 73 QEEYDFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGPDE 111 (614)
Q Consensus 73 ~~~yDvIVVGsG~aG~~~A~~Lae~~G~~VLlLEaG~~~ 111 (614)
...+|+|.||-|+.-+.+|.-|.+..+.+++.|||-+..
T Consensus 3 ~~~~DliGIG~GPfNL~LA~ll~e~~~~~~lFLerkp~F 41 (436)
T COG3486 3 AEVLDLIGIGIGPFNLSLAALLEEHSGLKSLFLERKPDF 41 (436)
T ss_pred CcceeeEEEccCchHHHHHHHhccccCcceEEEecCCCC
Confidence 346999999999999999999999856899999998663
No 361
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=83.32 E-value=1.1 Score=45.52 Aligned_cols=33 Identities=27% Similarity=0.351 Sum_probs=30.0
Q ss_pred cEEEECCCCchHHHHHHHhcCCCCeEEEecCCCC
Q psy1040 77 DFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGPD 110 (614)
Q Consensus 77 DvIVVGsG~aG~~~A~~Lae~~G~~VLlLEaG~~ 110 (614)
-+.|||+|..|...|..|+.+ |++|.++|+.+.
T Consensus 7 ~V~ViGaG~mG~~iA~~~a~~-G~~V~l~d~~~~ 39 (286)
T PRK07819 7 RVGVVGAGQMGAGIAEVCARA-GVDVLVFETTEE 39 (286)
T ss_pred EEEEEcccHHHHHHHHHHHhC-CCEEEEEECCHH
Confidence 478999999999999999999 999999997644
No 362
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=83.20 E-value=1.1 Score=48.84 Aligned_cols=33 Identities=24% Similarity=0.306 Sum_probs=30.5
Q ss_pred cEEEECCCCchHHHHHHHhcCCCCeEEEecCCCC
Q psy1040 77 DFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGPD 110 (614)
Q Consensus 77 DvIVVGsG~aG~~~A~~Lae~~G~~VLlLEaG~~ 110 (614)
.++|||+|..|+-+|..|++. |.+|.|+|+++.
T Consensus 168 ~vvVIGgG~~g~E~A~~l~~~-G~~Vtli~~~~~ 200 (446)
T TIGR01424 168 SILILGGGYIAVEFAGIWRGL-GVQVTLIYRGEL 200 (446)
T ss_pred eEEEECCcHHHHHHHHHHHHc-CCeEEEEEeCCC
Confidence 589999999999999999998 999999998865
No 363
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=83.01 E-value=1.1 Score=49.68 Aligned_cols=33 Identities=33% Similarity=0.394 Sum_probs=30.7
Q ss_pred cEEEECCCCchHHHHHHHhcCCCCeEEEecCCCC
Q psy1040 77 DFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGPD 110 (614)
Q Consensus 77 DvIVVGsG~aG~~~A~~Lae~~G~~VLlLEaG~~ 110 (614)
.++|||+|..|+-+|..|++. |.+|.|+|+++.
T Consensus 354 ~VvViGgG~~g~E~A~~L~~~-g~~Vtli~~~~~ 386 (515)
T TIGR03140 354 DVAVIGGGNSGIEAAIDLAGI-VRHVTVLEFADE 386 (515)
T ss_pred EEEEECCcHHHHHHHHHHHhc-CcEEEEEEeCCc
Confidence 799999999999999999998 999999998754
No 364
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=83.00 E-value=1.2 Score=39.72 Aligned_cols=33 Identities=24% Similarity=0.306 Sum_probs=29.2
Q ss_pred cccEEEECCCCchHHHHHHHhcCCCCe-EEEecCC
Q psy1040 75 EYDFVVVGGGVAGPVVAGRLVENPNWK-VLLLEAG 108 (614)
Q Consensus 75 ~yDvIVVGsG~aG~~~A~~Lae~~G~~-VLlLEaG 108 (614)
.--++|||+|.+|-.++..|++. |.+ |.|+-|-
T Consensus 12 ~~~vlviGaGg~ar~v~~~L~~~-g~~~i~i~nRt 45 (135)
T PF01488_consen 12 GKRVLVIGAGGAARAVAAALAAL-GAKEITIVNRT 45 (135)
T ss_dssp TSEEEEESSSHHHHHHHHHHHHT-TSSEEEEEESS
T ss_pred CCEEEEECCHHHHHHHHHHHHHc-CCCEEEEEECC
Confidence 35799999999999999999999 876 9998765
No 365
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=82.68 E-value=1.2 Score=50.72 Aligned_cols=33 Identities=21% Similarity=0.246 Sum_probs=30.9
Q ss_pred cEEEECCCCchHHHHHHHhcCCCCeEEEecCCCC
Q psy1040 77 DFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGPD 110 (614)
Q Consensus 77 DvIVVGsG~aG~~~A~~Lae~~G~~VLlLEaG~~ 110 (614)
.++|||+|..|+-+|..|++. |.+|.|+|+++.
T Consensus 314 ~VvIVGgG~iGvE~A~~l~~~-G~eVTLIe~~~~ 346 (659)
T PTZ00153 314 YMGIVGMGIIGLEFMDIYTAL-GSEVVSFEYSPQ 346 (659)
T ss_pred ceEEECCCHHHHHHHHHHHhC-CCeEEEEeccCc
Confidence 689999999999999999998 999999999865
No 366
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=82.51 E-value=1.2 Score=48.48 Aligned_cols=33 Identities=33% Similarity=0.406 Sum_probs=30.3
Q ss_pred ccEEEECCCCchHHHHHHHhcCCCCeEEEecCCC
Q psy1040 76 YDFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGP 109 (614)
Q Consensus 76 yDvIVVGsG~aG~~~A~~Lae~~G~~VLlLEaG~ 109 (614)
-.++|||+|..|..+|..|++. |++|.+.|+..
T Consensus 6 k~v~iiG~g~~G~~~A~~l~~~-G~~V~~~d~~~ 38 (450)
T PRK14106 6 KKVLVVGAGVSGLALAKFLKKL-GAKVILTDEKE 38 (450)
T ss_pred CEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCc
Confidence 3589999999999999999999 99999999864
No 367
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=82.44 E-value=1.3 Score=42.36 Aligned_cols=33 Identities=24% Similarity=0.309 Sum_probs=29.7
Q ss_pred cccEEEECCCCchHHHHHHHhcCCCC-eEEEecCC
Q psy1040 75 EYDFVVVGGGVAGPVVAGRLVENPNW-KVLLLEAG 108 (614)
Q Consensus 75 ~yDvIVVGsG~aG~~~A~~Lae~~G~-~VLlLEaG 108 (614)
..-|+|||+|..|+.+|..|++. |. ++.|++..
T Consensus 21 ~~~V~IvG~GglGs~ia~~La~~-Gvg~i~lvD~D 54 (200)
T TIGR02354 21 QATVAICGLGGLGSNVAINLARA-GIGKLILVDFD 54 (200)
T ss_pred CCcEEEECcCHHHHHHHHHHHHc-CCCEEEEECCC
Confidence 35799999999999999999999 98 69999866
No 368
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=82.33 E-value=1.1 Score=37.91 Aligned_cols=33 Identities=30% Similarity=0.359 Sum_probs=29.1
Q ss_pred cccEEEECCCCchHHHHHHHhcCCCCeEEEecCC
Q psy1040 75 EYDFVVVGGGVAGPVVAGRLVENPNWKVLLLEAG 108 (614)
Q Consensus 75 ~yDvIVVGsG~aG~~~A~~Lae~~G~~VLlLEaG 108 (614)
.--++|||+|..|..-+..|.+. |.+|.|+-.-
T Consensus 7 ~~~vlVvGgG~va~~k~~~Ll~~-gA~v~vis~~ 39 (103)
T PF13241_consen 7 GKRVLVVGGGPVAARKARLLLEA-GAKVTVISPE 39 (103)
T ss_dssp T-EEEEEEESHHHHHHHHHHCCC-TBEEEEEESS
T ss_pred CCEEEEECCCHHHHHHHHHHHhC-CCEEEEECCc
Confidence 35799999999999999999999 9999999754
No 369
>PRK04148 hypothetical protein; Provisional
Probab=82.31 E-value=1.3 Score=39.25 Aligned_cols=32 Identities=25% Similarity=0.350 Sum_probs=28.3
Q ss_pred cEEEECCCCchHHHHHHHhcCCCCeEEEecCCCC
Q psy1040 77 DFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGPD 110 (614)
Q Consensus 77 DvIVVGsG~aG~~~A~~Lae~~G~~VLlLEaG~~ 110 (614)
-+++||.| .|..+|..|++. |.+|+.+|..+.
T Consensus 19 kileIG~G-fG~~vA~~L~~~-G~~ViaIDi~~~ 50 (134)
T PRK04148 19 KIVELGIG-FYFKVAKKLKES-GFDVIVIDINEK 50 (134)
T ss_pred EEEEEEec-CCHHHHHHHHHC-CCEEEEEECCHH
Confidence 58999999 888889999998 999999997654
No 370
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=81.97 E-value=1.3 Score=49.77 Aligned_cols=33 Identities=36% Similarity=0.454 Sum_probs=30.8
Q ss_pred cEEEECCCCchHHHHHHHhcCCCCeEEEecCCCC
Q psy1040 77 DFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGPD 110 (614)
Q Consensus 77 DvIVVGsG~aG~~~A~~Lae~~G~~VLlLEaG~~ 110 (614)
.++|||+|..|+-+|..|++. |.+|.|+++++.
T Consensus 145 ~VvVIGgG~~g~E~A~~L~~~-g~~Vtli~~~~~ 177 (555)
T TIGR03143 145 DVFVIGGGFAAAEEAVFLTRY-ASKVTVIVREPD 177 (555)
T ss_pred EEEEECCCHHHHHHHHHHHcc-CCEEEEEEeCCc
Confidence 689999999999999999998 999999999864
No 371
>PLN02507 glutathione reductase
Probab=81.92 E-value=1.3 Score=48.95 Aligned_cols=33 Identities=24% Similarity=0.080 Sum_probs=30.6
Q ss_pred cEEEECCCCchHHHHHHHhcCCCCeEEEecCCCC
Q psy1040 77 DFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGPD 110 (614)
Q Consensus 77 DvIVVGsG~aG~~~A~~Lae~~G~~VLlLEaG~~ 110 (614)
.++|||+|..|+-+|..|++. |.+|.|+|+++.
T Consensus 205 ~vvVIGgG~ig~E~A~~l~~~-G~~Vtli~~~~~ 237 (499)
T PLN02507 205 RAVVLGGGYIAVEFASIWRGM-GATVDLFFRKEL 237 (499)
T ss_pred eEEEECCcHHHHHHHHHHHHc-CCeEEEEEecCC
Confidence 689999999999999999998 999999998864
No 372
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=81.91 E-value=1.5 Score=40.27 Aligned_cols=30 Identities=23% Similarity=0.251 Sum_probs=27.6
Q ss_pred ccEEEECCCCchHHHHHHHhcCCCCeEEEec
Q psy1040 76 YDFVVVGGGVAGPVVAGRLVENPNWKVLLLE 106 (614)
Q Consensus 76 yDvIVVGsG~aG~~~A~~Lae~~G~~VLlLE 106 (614)
--++|||+|..|.--|..|.+. |.+|.|+.
T Consensus 14 ~~vlVvGGG~va~rka~~Ll~~-ga~V~VIs 43 (157)
T PRK06719 14 KVVVIIGGGKIAYRKASGLKDT-GAFVTVVS 43 (157)
T ss_pred CEEEEECCCHHHHHHHHHHHhC-CCEEEEEc
Confidence 4599999999999999999998 99999993
No 373
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=81.79 E-value=1.4 Score=48.21 Aligned_cols=33 Identities=33% Similarity=0.466 Sum_probs=30.6
Q ss_pred cEEEECCCCchHHHHHHHhcCCCCeEEEecCCCC
Q psy1040 77 DFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGPD 110 (614)
Q Consensus 77 DvIVVGsG~aG~~~A~~Lae~~G~~VLlLEaG~~ 110 (614)
.++|||+|..|+-+|..|++. |.+|.|+|+++.
T Consensus 179 ~vvVIGgG~ig~E~A~~l~~~-g~~Vtli~~~~~ 211 (466)
T PRK07845 179 HLIVVGSGVTGAEFASAYTEL-GVKVTLVSSRDR 211 (466)
T ss_pred eEEEECCCHHHHHHHHHHHHc-CCeEEEEEcCCc
Confidence 589999999999999999998 999999998865
No 374
>PRK06116 glutathione reductase; Validated
Probab=81.76 E-value=1.4 Score=47.99 Aligned_cols=33 Identities=27% Similarity=0.263 Sum_probs=30.7
Q ss_pred cEEEECCCCchHHHHHHHhcCCCCeEEEecCCCC
Q psy1040 77 DFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGPD 110 (614)
Q Consensus 77 DvIVVGsG~aG~~~A~~Lae~~G~~VLlLEaG~~ 110 (614)
.++|||+|..|+-+|..|++. |.+|.++++++.
T Consensus 169 ~vvViGgG~~g~E~A~~l~~~-g~~Vtlv~~~~~ 201 (450)
T PRK06116 169 RVAVVGAGYIAVEFAGVLNGL-GSETHLFVRGDA 201 (450)
T ss_pred eEEEECCCHHHHHHHHHHHHc-CCeEEEEecCCC
Confidence 689999999999999999998 999999998864
No 375
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=81.75 E-value=1.5 Score=42.14 Aligned_cols=31 Identities=23% Similarity=0.339 Sum_probs=28.5
Q ss_pred ccEEEECCCCchHHHHHHHhcCCCCeEEEecC
Q psy1040 76 YDFVVVGGGVAGPVVAGRLVENPNWKVLLLEA 107 (614)
Q Consensus 76 yDvIVVGsG~aG~~~A~~Lae~~G~~VLlLEa 107 (614)
--++|||+|-.|...|..|.+. |.+|.|++.
T Consensus 11 k~vLVIGgG~va~~ka~~Ll~~-ga~V~VIs~ 41 (202)
T PRK06718 11 KRVVIVGGGKVAGRRAITLLKY-GAHIVVISP 41 (202)
T ss_pred CEEEEECCCHHHHHHHHHHHHC-CCeEEEEcC
Confidence 4699999999999999999998 999999974
No 376
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=81.44 E-value=1.3 Score=45.87 Aligned_cols=30 Identities=23% Similarity=0.316 Sum_probs=28.2
Q ss_pred EEEECCCCchHHHHHHHhcCCCCeEEEecCC
Q psy1040 78 FVVVGGGVAGPVVAGRLVENPNWKVLLLEAG 108 (614)
Q Consensus 78 vIVVGsG~aG~~~A~~Lae~~G~~VLlLEaG 108 (614)
+.|||+|..|...|..|+++ |++|.++.+.
T Consensus 3 I~IiGaGa~G~ala~~L~~~-g~~V~l~~r~ 32 (326)
T PRK14620 3 ISILGAGSFGTAIAIALSSK-KISVNLWGRN 32 (326)
T ss_pred EEEECcCHHHHHHHHHHHHC-CCeEEEEecC
Confidence 78999999999999999999 9999999874
No 377
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=81.43 E-value=1.4 Score=49.02 Aligned_cols=33 Identities=33% Similarity=0.416 Sum_probs=31.1
Q ss_pred cEEEECCCCchHHHHHHHhcCCCCeEEEecCCCC
Q psy1040 77 DFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGPD 110 (614)
Q Consensus 77 DvIVVGsG~aG~~~A~~Lae~~G~~VLlLEaG~~ 110 (614)
+++|||+|..|+-+|..|+.. +.+|.|+++++.
T Consensus 353 ~VvVVGgG~~g~e~A~~L~~~-~~~Vtlv~~~~~ 385 (517)
T PRK15317 353 RVAVIGGGNSGVEAAIDLAGI-VKHVTVLEFAPE 385 (517)
T ss_pred EEEEECCCHHHHHHHHHHHhc-CCEEEEEEECcc
Confidence 799999999999999999998 999999998865
No 378
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=81.20 E-value=1.4 Score=44.88 Aligned_cols=32 Identities=25% Similarity=0.337 Sum_probs=29.2
Q ss_pred cEEEECCCCchHHHHHHHhcCCCCeEEEecCCC
Q psy1040 77 DFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGP 109 (614)
Q Consensus 77 DvIVVGsG~aG~~~A~~Lae~~G~~VLlLEaG~ 109 (614)
-+.|||+|..|..+|..|+++ |++|.+.++-+
T Consensus 6 kI~vIGaG~mG~~iA~~la~~-G~~V~l~d~~~ 37 (292)
T PRK07530 6 KVGVIGAGQMGNGIAHVCALA-GYDVLLNDVSA 37 (292)
T ss_pred EEEEECCcHHHHHHHHHHHHC-CCeEEEEeCCH
Confidence 388999999999999999999 99999998753
No 379
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=81.11 E-value=1.4 Score=45.95 Aligned_cols=31 Identities=29% Similarity=0.462 Sum_probs=28.9
Q ss_pred cEEEECCCCchHHHHHHHhcCCCCeEEEecCC
Q psy1040 77 DFVVVGGGVAGPVVAGRLVENPNWKVLLLEAG 108 (614)
Q Consensus 77 DvIVVGsG~aG~~~A~~Lae~~G~~VLlLEaG 108 (614)
.+.|||+|..|...|.+|+++ |++|.++.+.
T Consensus 4 kI~IiG~G~mG~~~A~~L~~~-G~~V~~~~r~ 34 (341)
T PRK08229 4 RICVLGAGSIGCYLGGRLAAA-GADVTLIGRA 34 (341)
T ss_pred eEEEECCCHHHHHHHHHHHhc-CCcEEEEecH
Confidence 388999999999999999999 9999999975
No 380
>PTZ00058 glutathione reductase; Provisional
Probab=81.05 E-value=1.4 Score=49.34 Aligned_cols=33 Identities=9% Similarity=0.124 Sum_probs=30.7
Q ss_pred cEEEECCCCchHHHHHHHhcCCCCeEEEecCCCC
Q psy1040 77 DFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGPD 110 (614)
Q Consensus 77 DvIVVGsG~aG~~~A~~Lae~~G~~VLlLEaG~~ 110 (614)
.++|||+|..|+-+|..|++. |.+|.|+|+++.
T Consensus 239 ~VvIIGgG~iGlE~A~~l~~~-G~~Vtli~~~~~ 271 (561)
T PTZ00058 239 RIGIAGSGYIAVELINVVNRL-GAESYIFARGNR 271 (561)
T ss_pred EEEEECCcHHHHHHHHHHHHc-CCcEEEEEeccc
Confidence 589999999999999999998 999999999864
No 381
>PLN02546 glutathione reductase
Probab=80.38 E-value=1.6 Score=48.96 Aligned_cols=33 Identities=21% Similarity=0.243 Sum_probs=30.6
Q ss_pred cEEEECCCCchHHHHHHHhcCCCCeEEEecCCCC
Q psy1040 77 DFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGPD 110 (614)
Q Consensus 77 DvIVVGsG~aG~~~A~~Lae~~G~~VLlLEaG~~ 110 (614)
.++|||+|..|+-+|..|++. |.+|.|+|+++.
T Consensus 254 ~V~VIGgG~iGvE~A~~L~~~-g~~Vtlv~~~~~ 286 (558)
T PLN02546 254 KIAIVGGGYIALEFAGIFNGL-KSDVHVFIRQKK 286 (558)
T ss_pred eEEEECCCHHHHHHHHHHHhc-CCeEEEEEeccc
Confidence 689999999999999999998 999999998854
No 382
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=80.31 E-value=1.7 Score=47.13 Aligned_cols=33 Identities=30% Similarity=0.385 Sum_probs=30.7
Q ss_pred cEEEECCCCchHHHHHHHhcCCCCeEEEecCCCC
Q psy1040 77 DFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGPD 110 (614)
Q Consensus 77 DvIVVGsG~aG~~~A~~Lae~~G~~VLlLEaG~~ 110 (614)
.++|||+|..|+-+|..|++. |.+|.|+|+++.
T Consensus 160 ~v~ViGgG~~g~E~A~~l~~~-g~~Vtli~~~~~ 192 (441)
T PRK08010 160 HLGILGGGYIGVEFASMFANF-GSKVTILEAASL 192 (441)
T ss_pred eEEEECCCHHHHHHHHHHHHC-CCeEEEEecCCC
Confidence 589999999999999999998 999999999754
No 383
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=79.99 E-value=1.7 Score=45.40 Aligned_cols=35 Identities=26% Similarity=0.347 Sum_probs=30.7
Q ss_pred cccEEEECCCCchHHHHHHHhcCCCC-eEEEecCCCC
Q psy1040 75 EYDFVVVGGGVAGPVVAGRLVENPNW-KVLLLEAGPD 110 (614)
Q Consensus 75 ~yDvIVVGsG~aG~~~A~~Lae~~G~-~VLlLEaG~~ 110 (614)
..-|+|||+|..|+.+|..|++. |. ++.|++....
T Consensus 24 ~~~VlIiG~GglGs~va~~La~a-Gvg~i~lvD~D~v 59 (338)
T PRK12475 24 EKHVLIVGAGALGAANAEALVRA-GIGKLTIADRDYV 59 (338)
T ss_pred CCcEEEECCCHHHHHHHHHHHHc-CCCEEEEEcCCcc
Confidence 35699999999999999999999 97 8999987643
No 384
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=79.97 E-value=1.7 Score=46.90 Aligned_cols=34 Identities=47% Similarity=0.710 Sum_probs=29.6
Q ss_pred cEEEECCCCchHHHHHHHhcC-------------CCCeEEEecCCCC
Q psy1040 77 DFVVVGGGVAGPVVAGRLVEN-------------PNWKVLLLEAGPD 110 (614)
Q Consensus 77 DvIVVGsG~aG~~~A~~Lae~-------------~G~~VLlLEaG~~ 110 (614)
.++|||+|..|.-+|..|++. ++.+|.|+|+++.
T Consensus 175 ~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~ 221 (424)
T PTZ00318 175 HFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSE 221 (424)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCCCc
Confidence 799999999999999999861 3789999999865
No 385
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=79.91 E-value=1.7 Score=44.34 Aligned_cols=31 Identities=26% Similarity=0.472 Sum_probs=28.8
Q ss_pred EEEECCCCchHHHHHHHhcCCCCeEEEecCCC
Q psy1040 78 FVVVGGGVAGPVVAGRLVENPNWKVLLLEAGP 109 (614)
Q Consensus 78 vIVVGsG~aG~~~A~~Lae~~G~~VLlLEaG~ 109 (614)
+.|||+|..|..+|..|+.+ |++|.++++-+
T Consensus 6 I~ViGaG~mG~~iA~~la~~-G~~V~l~d~~~ 36 (291)
T PRK06035 6 IGVVGSGVMGQGIAQVFART-GYDVTIVDVSE 36 (291)
T ss_pred EEEECccHHHHHHHHHHHhc-CCeEEEEeCCH
Confidence 78999999999999999998 99999999753
No 386
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=79.86 E-value=1.7 Score=45.28 Aligned_cols=35 Identities=26% Similarity=0.368 Sum_probs=31.2
Q ss_pred cccEEEECCCCchHHHHHHHhcCCCC-eEEEecCCCC
Q psy1040 75 EYDFVVVGGGVAGPVVAGRLVENPNW-KVLLLEAGPD 110 (614)
Q Consensus 75 ~yDvIVVGsG~aG~~~A~~Lae~~G~-~VLlLEaG~~ 110 (614)
..-|+|||+|.-|+.+|..|++. |. ++.|++...-
T Consensus 24 ~~~VlVvG~GglGs~va~~La~a-Gvg~i~lvD~D~V 59 (339)
T PRK07688 24 EKHVLIIGAGALGTANAEMLVRA-GVGKVTIVDRDYV 59 (339)
T ss_pred CCcEEEECCCHHHHHHHHHHHHc-CCCeEEEEeCCcc
Confidence 46799999999999999999999 98 8999998643
No 387
>PRK13748 putative mercuric reductase; Provisional
Probab=79.61 E-value=1.7 Score=48.86 Aligned_cols=31 Identities=23% Similarity=0.288 Sum_probs=29.3
Q ss_pred cEEEECCCCchHHHHHHHhcCCCCeEEEecCC
Q psy1040 77 DFVVVGGGVAGPVVAGRLVENPNWKVLLLEAG 108 (614)
Q Consensus 77 DvIVVGsG~aG~~~A~~Lae~~G~~VLlLEaG 108 (614)
.++|||+|..|+-+|..|++. |.+|.|+|+.
T Consensus 272 ~vvViGgG~ig~E~A~~l~~~-g~~Vtli~~~ 302 (561)
T PRK13748 272 RLAVIGSSVVALELAQAFARL-GSKVTILARS 302 (561)
T ss_pred eEEEECCCHHHHHHHHHHHHc-CCEEEEEecC
Confidence 589999999999999999998 9999999975
No 388
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=79.46 E-value=1.8 Score=44.46 Aligned_cols=32 Identities=25% Similarity=0.510 Sum_probs=28.5
Q ss_pred EEEECCCCchHHHHHHHhcCCCCeEEEecCCCC
Q psy1040 78 FVVVGGGVAGPVVAGRLVENPNWKVLLLEAGPD 110 (614)
Q Consensus 78 vIVVGsG~aG~~~A~~Lae~~G~~VLlLEaG~~ 110 (614)
+.|+|+|+.|+..|++|+++ |..|+++=|.+.
T Consensus 3 I~IlGaGAvG~l~g~~L~~~-g~~V~~~~R~~~ 34 (307)
T COG1893 3 ILILGAGAIGSLLGARLAKA-GHDVTLLVRSRR 34 (307)
T ss_pred EEEECCcHHHHHHHHHHHhC-CCeEEEEecHHH
Confidence 68999999999999999999 888998877653
No 389
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=79.18 E-value=1.9 Score=44.87 Aligned_cols=31 Identities=23% Similarity=0.226 Sum_probs=29.0
Q ss_pred cEEEECCCCchHHHHHHHhcCCCCeEEEecCC
Q psy1040 77 DFVVVGGGVAGPVVAGRLVENPNWKVLLLEAG 108 (614)
Q Consensus 77 DvIVVGsG~aG~~~A~~Lae~~G~~VLlLEaG 108 (614)
-+.|||+|..|...|.+|+++ |++|.++.+.
T Consensus 6 ~I~iIG~G~mG~~ia~~L~~~-G~~V~~~~r~ 36 (328)
T PRK14618 6 RVAVLGAGAWGTALAVLAASK-GVPVRLWARR 36 (328)
T ss_pred eEEEECcCHHHHHHHHHHHHC-CCeEEEEeCC
Confidence 489999999999999999999 9999999885
No 390
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=79.17 E-value=2 Score=45.30 Aligned_cols=33 Identities=30% Similarity=0.539 Sum_probs=30.0
Q ss_pred cEEEECCCCchHHHHHHHhcCCC-CeEEEecCCCC
Q psy1040 77 DFVVVGGGVAGPVVAGRLVENPN-WKVLLLEAGPD 110 (614)
Q Consensus 77 DvIVVGsG~aG~~~A~~Lae~~G-~~VLlLEaG~~ 110 (614)
+++|||+|..|.++|..||++ | .+|++..|-..
T Consensus 3 ~ilviGaG~Vg~~va~~la~~-~d~~V~iAdRs~~ 36 (389)
T COG1748 3 KILVIGAGGVGSVVAHKLAQN-GDGEVTIADRSKE 36 (389)
T ss_pred cEEEECCchhHHHHHHHHHhC-CCceEEEEeCCHH
Confidence 689999999999999999999 7 89999998743
No 391
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=78.50 E-value=2 Score=43.12 Aligned_cols=35 Identities=23% Similarity=0.266 Sum_probs=30.6
Q ss_pred cccEEEECCCCchHHHHHHHhcCCC-CeEEEecCCCC
Q psy1040 75 EYDFVVVGGGVAGPVVAGRLVENPN-WKVLLLEAGPD 110 (614)
Q Consensus 75 ~yDvIVVGsG~aG~~~A~~Lae~~G-~~VLlLEaG~~ 110 (614)
..-|+|||.|..|+.+|..|++. | .++.|+|....
T Consensus 30 ~s~VlVvG~GGVGs~vae~Lar~-GVg~itLiD~D~V 65 (268)
T PRK15116 30 DAHICVVGIGGVGSWAAEALART-GIGAITLIDMDDV 65 (268)
T ss_pred CCCEEEECcCHHHHHHHHHHHHc-CCCEEEEEeCCEe
Confidence 45799999999999999999999 8 58999996543
No 392
>PRK14694 putative mercuric reductase; Provisional
Probab=78.19 E-value=2 Score=47.09 Aligned_cols=31 Identities=19% Similarity=0.291 Sum_probs=28.9
Q ss_pred cEEEECCCCchHHHHHHHhcCCCCeEEEecCC
Q psy1040 77 DFVVVGGGVAGPVVAGRLVENPNWKVLLLEAG 108 (614)
Q Consensus 77 DvIVVGsG~aG~~~A~~Lae~~G~~VLlLEaG 108 (614)
.++|||+|..|+-+|..|++. |.+|.|++++
T Consensus 180 ~vvViG~G~~G~E~A~~l~~~-g~~Vtlv~~~ 210 (468)
T PRK14694 180 RLLVIGASVVALELAQAFARL-GSRVTVLARS 210 (468)
T ss_pred eEEEECCCHHHHHHHHHHHHc-CCeEEEEECC
Confidence 589999999999999999998 9999999874
No 393
>PRK14727 putative mercuric reductase; Provisional
Probab=78.09 E-value=2 Score=47.26 Aligned_cols=31 Identities=19% Similarity=0.310 Sum_probs=29.0
Q ss_pred cEEEECCCCchHHHHHHHhcCCCCeEEEecCC
Q psy1040 77 DFVVVGGGVAGPVVAGRLVENPNWKVLLLEAG 108 (614)
Q Consensus 77 DvIVVGsG~aG~~~A~~Lae~~G~~VLlLEaG 108 (614)
.++|||+|..|+-+|..|++. |.+|.|+++.
T Consensus 190 ~vvVIGgG~iG~E~A~~l~~~-G~~Vtlv~~~ 220 (479)
T PRK14727 190 SLTVIGSSVVAAEIAQAYARL-GSRVTILARS 220 (479)
T ss_pred eEEEECCCHHHHHHHHHHHHc-CCEEEEEEcC
Confidence 599999999999999999998 9999999974
No 394
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=78.06 E-value=2.3 Score=40.80 Aligned_cols=31 Identities=26% Similarity=0.355 Sum_probs=28.7
Q ss_pred cEEEECCCCchHHHHHHHhcCCCCeEEEecCC
Q psy1040 77 DFVVVGGGVAGPVVAGRLVENPNWKVLLLEAG 108 (614)
Q Consensus 77 DvIVVGsG~aG~~~A~~Lae~~G~~VLlLEaG 108 (614)
-++|+|.|..|..+|.+|.+. |.+|++.+..
T Consensus 30 ~v~I~G~G~vG~~~A~~L~~~-G~~Vvv~D~~ 60 (200)
T cd01075 30 TVAVQGLGKVGYKLAEHLLEE-GAKLIVADIN 60 (200)
T ss_pred EEEEECCCHHHHHHHHHHHHC-CCEEEEEcCC
Confidence 499999999999999999998 9999998865
No 395
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=77.83 E-value=2 Score=43.55 Aligned_cols=31 Identities=19% Similarity=0.389 Sum_probs=28.7
Q ss_pred cEEEECCCCchHHHHHHHhcCCCCeEEEecCC
Q psy1040 77 DFVVVGGGVAGPVVAGRLVENPNWKVLLLEAG 108 (614)
Q Consensus 77 DvIVVGsG~aG~~~A~~Lae~~G~~VLlLEaG 108 (614)
.+.|||+|..|..+|..|+++ |++|+++|.-
T Consensus 5 kI~VIG~G~mG~~ia~~la~~-g~~V~~~d~~ 35 (282)
T PRK05808 5 KIGVIGAGTMGNGIAQVCAVA-GYDVVMVDIS 35 (282)
T ss_pred EEEEEccCHHHHHHHHHHHHC-CCceEEEeCC
Confidence 488999999999999999999 9999999865
No 396
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=77.82 E-value=2 Score=45.10 Aligned_cols=32 Identities=28% Similarity=0.185 Sum_probs=28.8
Q ss_pred cEEEECCCCchHHHHHHHhcCCCCe-EEEecCCC
Q psy1040 77 DFVVVGGGVAGPVVAGRLVENPNWK-VLLLEAGP 109 (614)
Q Consensus 77 DvIVVGsG~aG~~~A~~Lae~~G~~-VLlLEaG~ 109 (614)
.++|||+|..|+-+|..|++. |.+ |.|+|+.+
T Consensus 174 ~vvViG~G~~g~e~A~~l~~~-g~~~Vtvi~~~~ 206 (352)
T PRK12770 174 KVVVVGAGLTAVDAALEAVLL-GAEKVYLAYRRT 206 (352)
T ss_pred EEEEECCCHHHHHHHHHHHHc-CCCeEEEEeecc
Confidence 589999999999999999987 886 99999764
No 397
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=77.75 E-value=2.1 Score=46.57 Aligned_cols=33 Identities=24% Similarity=0.206 Sum_probs=30.5
Q ss_pred cEEEECCCCchHHHHHHHhcCCCCeEEEecCCCC
Q psy1040 77 DFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGPD 110 (614)
Q Consensus 77 DvIVVGsG~aG~~~A~~Lae~~G~~VLlLEaG~~ 110 (614)
.++|||+|..|+-+|..|++. |.+|.|+++...
T Consensus 274 ~VvVIGgG~~a~d~A~~l~~~-G~~Vtlv~~~~~ 306 (449)
T TIGR01316 274 SVVVIGGGNTAVDSARTALRL-GAEVHCLYRRTR 306 (449)
T ss_pred eEEEECCCHHHHHHHHHHHHc-CCEEEEEeecCc
Confidence 699999999999999999998 999999998753
No 398
>PLN02612 phytoene desaturase
Probab=77.64 E-value=3.3 Score=46.62 Aligned_cols=46 Identities=11% Similarity=0.189 Sum_probs=35.3
Q ss_pred cCCCeEEEcccEEEEEEEcCCCCeEEEEEEEeCCCCceEEEEeccEEEEccCC
Q psy1040 281 KQDNLKVQLNAHVMKLNIDPKTKRALSVQFKDTNTNEIKTVKAKKEIILTAGA 333 (614)
Q Consensus 281 ~~~n~~I~~~~~V~~I~~d~~~~ra~GV~~~~~~~g~~~~v~A~k~VVlaaG~ 333 (614)
++.|.+|+++++|++|..++ ++++++|++.+ |+ .+.|+ .||+|+..
T Consensus 319 ~~~G~~I~l~~~V~~I~~~~-~g~v~~v~~~~---G~--~~~ad-~VI~a~p~ 364 (567)
T PLN02612 319 QSLGGEVRLNSRIKKIELND-DGTVKHFLLTN---GS--VVEGD-VYVSATPV 364 (567)
T ss_pred HhcCCEEEeCCeeeEEEECC-CCcEEEEEECC---Cc--EEECC-EEEECCCH
Confidence 35689999999999999864 46788888743 43 57897 69998753
No 399
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=77.37 E-value=2.5 Score=37.95 Aligned_cols=32 Identities=25% Similarity=0.320 Sum_probs=28.5
Q ss_pred EEEECCCCchHHHHHHHhcCCCC-eEEEecCCCC
Q psy1040 78 FVVVGGGVAGPVVAGRLVENPNW-KVLLLEAGPD 110 (614)
Q Consensus 78 vIVVGsG~aG~~~A~~Lae~~G~-~VLlLEaG~~ 110 (614)
++|||.|..|+.+|..|+.. |. ++.+++....
T Consensus 2 VliiG~GglGs~ia~~L~~~-Gv~~i~ivD~d~v 34 (143)
T cd01483 2 VLLVGLGGLGSEIALNLARS-GVGKITLIDFDTV 34 (143)
T ss_pred EEEECCCHHHHHHHHHHHHC-CCCEEEEEcCCCc
Confidence 78999999999999999998 87 7999986644
No 400
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=77.31 E-value=2.5 Score=39.53 Aligned_cols=31 Identities=19% Similarity=0.241 Sum_probs=28.1
Q ss_pred EEEECCCCchHHHHHHHhcCCCC-eEEEecCCC
Q psy1040 78 FVVVGGGVAGPVVAGRLVENPNW-KVLLLEAGP 109 (614)
Q Consensus 78 vIVVGsG~aG~~~A~~Lae~~G~-~VLlLEaG~ 109 (614)
|+|||+|..|+.+|..|++. |. ++.|++...
T Consensus 2 VlViG~GglGs~ia~~La~~-Gvg~i~lvD~D~ 33 (174)
T cd01487 2 VGIAGAGGLGSNIAVLLARS-GVGNLKLVDFDV 33 (174)
T ss_pred EEEECcCHHHHHHHHHHHHc-CCCeEEEEeCCE
Confidence 78999999999999999998 98 599999764
No 401
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=77.06 E-value=3.1 Score=38.65 Aligned_cols=33 Identities=27% Similarity=0.290 Sum_probs=29.3
Q ss_pred cccEEEECCCC-chHHHHHHHhcCCCCeEEEecCC
Q psy1040 75 EYDFVVVGGGV-AGPVVAGRLVENPNWKVLLLEAG 108 (614)
Q Consensus 75 ~yDvIVVGsG~-aG~~~A~~Lae~~G~~VLlLEaG 108 (614)
...++|||+|- +|..+|..|.+. |.+|.++.+-
T Consensus 44 gk~vlViG~G~~~G~~~a~~L~~~-g~~V~v~~r~ 77 (168)
T cd01080 44 GKKVVVVGRSNIVGKPLAALLLNR-NATVTVCHSK 77 (168)
T ss_pred CCEEEEECCcHHHHHHHHHHHhhC-CCEEEEEECC
Confidence 36799999996 699999999998 9999999975
No 402
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=76.96 E-value=2.4 Score=46.73 Aligned_cols=33 Identities=27% Similarity=0.254 Sum_probs=27.9
Q ss_pred cEEEECCCCchHHHHHHH---hcCCCCeEEEecCCCC
Q psy1040 77 DFVVVGGGVAGPVVAGRL---VENPNWKVLLLEAGPD 110 (614)
Q Consensus 77 DvIVVGsG~aG~~~A~~L---ae~~G~~VLlLEaG~~ 110 (614)
.++|||+|..|+-+|..+ .+. |.+|.|+|+++.
T Consensus 189 ~vvIIGgG~iG~E~A~~~~~l~~~-G~~Vtli~~~~~ 224 (486)
T TIGR01423 189 RVLTVGGGFISVEFAGIFNAYKPR-GGKVTLCYRNNM 224 (486)
T ss_pred eEEEECCCHHHHHHHHHHHHhccC-CCeEEEEecCCc
Confidence 589999999999999654 445 899999999865
No 403
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=76.92 E-value=2.5 Score=40.70 Aligned_cols=30 Identities=23% Similarity=0.316 Sum_probs=28.0
Q ss_pred cEEEECCCCchHHHHHHHhcCCCCeEEEecC
Q psy1040 77 DFVVVGGGVAGPVVAGRLVENPNWKVLLLEA 107 (614)
Q Consensus 77 DvIVVGsG~aG~~~A~~Lae~~G~~VLlLEa 107 (614)
-++|||+|..|...|..|.+. |.+|.|+..
T Consensus 11 ~vlVvGgG~va~rk~~~Ll~~-ga~VtVvsp 40 (205)
T TIGR01470 11 AVLVVGGGDVALRKARLLLKA-GAQLRVIAE 40 (205)
T ss_pred eEEEECcCHHHHHHHHHHHHC-CCEEEEEcC
Confidence 699999999999999999998 999999974
No 404
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=76.67 E-value=2.2 Score=37.85 Aligned_cols=34 Identities=24% Similarity=0.367 Sum_probs=29.2
Q ss_pred ccEEEECCCCchHHHHHHHhcCCCC-eEEEecCCCC
Q psy1040 76 YDFVVVGGGVAGPVVAGRLVENPNW-KVLLLEAGPD 110 (614)
Q Consensus 76 yDvIVVGsG~aG~~~A~~Lae~~G~-~VLlLEaG~~ 110 (614)
.-++|||+|..|+.+|..|+.. |. ++.|++...-
T Consensus 3 ~~v~iiG~G~vGs~va~~L~~~-Gv~~i~lvD~d~v 37 (135)
T PF00899_consen 3 KRVLIIGAGGVGSEVAKNLARS-GVGKITLVDDDIV 37 (135)
T ss_dssp -EEEEESTSHHHHHHHHHHHHH-TTSEEEEEESSBB
T ss_pred CEEEEECcCHHHHHHHHHHHHh-CCCceeecCCcce
Confidence 3489999999999999999998 87 7999987643
No 405
>KOG3923|consensus
Probab=76.44 E-value=4.1 Score=40.93 Aligned_cols=36 Identities=28% Similarity=0.293 Sum_probs=27.3
Q ss_pred cccEEEECCCCchHHHHHHHhcC------CCCeEEEecCCCC
Q psy1040 75 EYDFVVVGGGVAGPVVAGRLVEN------PNWKVLLLEAGPD 110 (614)
Q Consensus 75 ~yDvIVVGsG~aG~~~A~~Lae~------~G~~VLlLEaG~~ 110 (614)
.-+++|||+|..|++.|..+.+. |-.+|.+++--..
T Consensus 3 ~~~iaViGaGVIGlsTA~~i~~~~~~~~ip~~~vtv~~Drf~ 44 (342)
T KOG3923|consen 3 TPRIAVIGAGVIGLSTALCILELYHSVLIPVAKVTVISDRFT 44 (342)
T ss_pred CccEEEEcCCeechhHHHHHHHhhhhccCCcceEEEecCCCc
Confidence 35899999999999999666652 4568888874433
No 406
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=76.41 E-value=2.3 Score=41.68 Aligned_cols=32 Identities=25% Similarity=0.454 Sum_probs=28.7
Q ss_pred cEEEECCCCchHHHHHHHhcCCCCe---EEEecCCC
Q psy1040 77 DFVVVGGGVAGPVVAGRLVENPNWK---VLLLEAGP 109 (614)
Q Consensus 77 DvIVVGsG~aG~~~A~~Lae~~G~~---VLlLEaG~ 109 (614)
-++|+|+|.+|..+|..|.+. |.+ |.|+++-+
T Consensus 27 rvlvlGAGgAg~aiA~~L~~~-G~~~~~i~ivdr~g 61 (226)
T cd05311 27 KIVINGAGAAGIAIARLLLAA-GAKPENIVVVDSKG 61 (226)
T ss_pred EEEEECchHHHHHHHHHHHHc-CcCcceEEEEeCCC
Confidence 589999999999999999998 874 99999874
No 407
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=76.21 E-value=2.5 Score=43.50 Aligned_cols=32 Identities=19% Similarity=0.483 Sum_probs=29.0
Q ss_pred cEEEECCCCchHHHHHHHhcCCCCeEEEecCCC
Q psy1040 77 DFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGP 109 (614)
Q Consensus 77 DvIVVGsG~aG~~~A~~Lae~~G~~VLlLEaG~ 109 (614)
.+.|||+|..|..+|..|+++ |++|.++++..
T Consensus 6 ~I~vIGaG~mG~~iA~~l~~~-g~~V~~~d~~~ 37 (311)
T PRK06130 6 NLAIIGAGTMGSGIAALFARK-GLQVVLIDVME 37 (311)
T ss_pred EEEEECCCHHHHHHHHHHHhC-CCeEEEEECCH
Confidence 488999999999999999998 99999998653
No 408
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=76.15 E-value=2.5 Score=43.63 Aligned_cols=32 Identities=31% Similarity=0.431 Sum_probs=29.3
Q ss_pred cEEEECCCCchHHHHHHHhcCCCCeEEEecCCC
Q psy1040 77 DFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGP 109 (614)
Q Consensus 77 DvIVVGsG~aG~~~A~~Lae~~G~~VLlLEaG~ 109 (614)
.+.|||+|..|+..|.+|+++ |++|.++.+.+
T Consensus 3 kI~iiG~G~mG~~~a~~L~~~-g~~V~~~~r~~ 34 (325)
T PRK00094 3 KIAVLGAGSWGTALAIVLARN-GHDVTLWARDP 34 (325)
T ss_pred EEEEECCCHHHHHHHHHHHhC-CCEEEEEECCH
Confidence 478999999999999999998 99999998864
No 409
>PTZ00052 thioredoxin reductase; Provisional
Probab=76.13 E-value=2.3 Score=46.98 Aligned_cols=31 Identities=26% Similarity=0.302 Sum_probs=29.0
Q ss_pred cEEEECCCCchHHHHHHHhcCCCCeEEEecCC
Q psy1040 77 DFVVVGGGVAGPVVAGRLVENPNWKVLLLEAG 108 (614)
Q Consensus 77 DvIVVGsG~aG~~~A~~Lae~~G~~VLlLEaG 108 (614)
.++|||+|..|+-+|..|++. |.+|.|+++.
T Consensus 184 ~vvIIGgG~iG~E~A~~l~~~-G~~Vtli~~~ 214 (499)
T PTZ00052 184 KTLIVGASYIGLETAGFLNEL-GFDVTVAVRS 214 (499)
T ss_pred eEEEECCCHHHHHHHHHHHHc-CCcEEEEEcC
Confidence 689999999999999999998 9999999863
No 410
>KOG2495|consensus
Probab=75.83 E-value=1.5 Score=46.01 Aligned_cols=35 Identities=43% Similarity=0.613 Sum_probs=29.3
Q ss_pred ccEEEECCCCchHHHHHHHhcC-------------CCCeEEEecCCCC
Q psy1040 76 YDFVVVGGGVAGPVVAGRLVEN-------------PNWKVLLLEAGPD 110 (614)
Q Consensus 76 yDvIVVGsG~aG~~~A~~Lae~-------------~G~~VLlLEaG~~ 110 (614)
--+||||||+.|.-.|.+|+.- .-.+|+|+||++.
T Consensus 219 Lh~VVVGGGPTGVEFAaEL~Dfi~~Dl~k~yp~l~~~i~vtLiEA~d~ 266 (491)
T KOG2495|consen 219 LHFVVVGGGPTGVEFAAELADFIPEDLRKIYPELKKDIKVTLIEAADH 266 (491)
T ss_pred EEEEEECCCCcceeehHHHHHHHHHHHHHhhhcchhheEEEeeccchh
Confidence 4799999999999999999751 1358999999975
No 411
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=75.60 E-value=2.8 Score=43.10 Aligned_cols=30 Identities=33% Similarity=0.551 Sum_probs=27.3
Q ss_pred EEEECCCCchHHHHHHHhcCCCC-eEEEecCC
Q psy1040 78 FVVVGGGVAGPVVAGRLVENPNW-KVLLLEAG 108 (614)
Q Consensus 78 vIVVGsG~aG~~~A~~Lae~~G~-~VLlLEaG 108 (614)
+.|||+|..|+.+|.-|+.. |. +|+++|.-
T Consensus 4 V~VIGaG~vG~~iA~~la~~-g~~~VvlvDi~ 34 (305)
T TIGR01763 4 ISVIGAGFVGATTAFRLAEK-ELADLVLLDVV 34 (305)
T ss_pred EEEECcCHHHHHHHHHHHHc-CCCeEEEEeCC
Confidence 78999999999999999997 76 89999983
No 412
>PRK07233 hypothetical protein; Provisional
Probab=75.55 E-value=3.6 Score=44.31 Aligned_cols=54 Identities=19% Similarity=0.175 Sum_probs=38.1
Q ss_pred hhhcCCCeEEEcccEEEEEEEcCCCCeEEEEEEEeCCCCceEEEEeccEEEEccCCCChHHHH
Q psy1040 278 DKYKQDNLKVQLNAHVMKLNIDPKTKRALSVQFKDTNTNEIKTVKAKKEIILTAGAIGSPQLL 340 (614)
Q Consensus 278 ~~~~~~n~~I~~~~~V~~I~~d~~~~ra~GV~~~~~~~g~~~~v~A~k~VVlaaG~i~sp~LL 340 (614)
..+++.|++|+++++|++|..+ +++++++.. + ++ ++.++ .||+|+..-..++||
T Consensus 206 ~~l~~~g~~v~~~~~V~~i~~~--~~~~~~~~~--~--~~--~~~ad-~vI~a~p~~~~~~ll 259 (434)
T PRK07233 206 EAIEARGGEIRLGTPVTSVVID--GGGVTGVEV--D--GE--EEDFD-AVISTAPPPILARLV 259 (434)
T ss_pred HHHHhcCceEEeCCCeeEEEEc--CCceEEEEe--C--Cc--eEECC-EEEECCCHHHHHhhc
Confidence 3345568899999999999987 466666652 2 33 68897 699999865555443
No 413
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=75.52 E-value=2.6 Score=42.92 Aligned_cols=32 Identities=16% Similarity=0.278 Sum_probs=28.5
Q ss_pred cEEEECCCCchHHHHHHHhcCCCCe-EEEecCCC
Q psy1040 77 DFVVVGGGVAGPVVAGRLVENPNWK-VLLLEAGP 109 (614)
Q Consensus 77 DvIVVGsG~aG~~~A~~Lae~~G~~-VLlLEaG~ 109 (614)
-++|+|+|.+|.++|..|++. |.+ |.|+.|..
T Consensus 128 ~vlI~GAGGagrAia~~La~~-G~~~V~I~~R~~ 160 (289)
T PRK12548 128 KLTVIGAGGAATAIQVQCALD-GAKEITIFNIKD 160 (289)
T ss_pred EEEEECCcHHHHHHHHHHHHC-CCCEEEEEeCCc
Confidence 589999999999999999998 986 99998754
No 414
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=75.22 E-value=2.9 Score=42.69 Aligned_cols=31 Identities=32% Similarity=0.451 Sum_probs=28.8
Q ss_pred EEEECCCCchHHHHHHHhcCCCCeEEEecCCC
Q psy1040 78 FVVVGGGVAGPVVAGRLVENPNWKVLLLEAGP 109 (614)
Q Consensus 78 vIVVGsG~aG~~~A~~Lae~~G~~VLlLEaG~ 109 (614)
+.|||+|..|..+|..|+.+ |++|.+.++.+
T Consensus 7 V~vIG~G~mG~~iA~~l~~~-G~~V~~~d~~~ 37 (295)
T PLN02545 7 VGVVGAGQMGSGIAQLAAAA-GMDVWLLDSDP 37 (295)
T ss_pred EEEECCCHHHHHHHHHHHhc-CCeEEEEeCCH
Confidence 88999999999999999998 99999998753
No 415
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=75.13 E-value=2.9 Score=42.46 Aligned_cols=33 Identities=27% Similarity=0.439 Sum_probs=29.2
Q ss_pred ccEEEECCCCchHHHHHHHhcCCCC-eEEEecCCC
Q psy1040 76 YDFVVVGGGVAGPVVAGRLVENPNW-KVLLLEAGP 109 (614)
Q Consensus 76 yDvIVVGsG~aG~~~A~~Lae~~G~-~VLlLEaG~ 109 (614)
-.++|||+|.+|.++|..|++. |. +|.|+.|-.
T Consensus 128 k~vlIlGaGGaaraia~aL~~~-G~~~I~I~nR~~ 161 (284)
T PRK12549 128 ERVVQLGAGGAGAAVAHALLTL-GVERLTIFDVDP 161 (284)
T ss_pred CEEEEECCcHHHHHHHHHHHHc-CCCEEEEECCCH
Confidence 4699999999999999999998 86 799998753
No 416
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=75.09 E-value=2.7 Score=44.42 Aligned_cols=32 Identities=28% Similarity=0.370 Sum_probs=29.5
Q ss_pred ccEEEECCCCchHHHHHHHhcCCCCeEEEecCC
Q psy1040 76 YDFVVVGGGVAGPVVAGRLVENPNWKVLLLEAG 108 (614)
Q Consensus 76 yDvIVVGsG~aG~~~A~~Lae~~G~~VLlLEaG 108 (614)
.+++|||+|.+|..+|..|... |.+|.++++.
T Consensus 168 ~~VlViGaG~vG~~aa~~a~~l-Ga~V~v~d~~ 199 (370)
T TIGR00518 168 GDVTIIGGGVVGTNAAKMANGL-GATVTILDIN 199 (370)
T ss_pred ceEEEEcCCHHHHHHHHHHHHC-CCeEEEEECC
Confidence 5699999999999999999988 9999999875
No 417
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=74.73 E-value=3.2 Score=44.68 Aligned_cols=32 Identities=22% Similarity=0.304 Sum_probs=29.2
Q ss_pred EEEECCCCchHHHHHHHhcCCCCeEEEecCCCC
Q psy1040 78 FVVVGGGVAGPVVAGRLVENPNWKVLLLEAGPD 110 (614)
Q Consensus 78 vIVVGsG~aG~~~A~~Lae~~G~~VLlLEaG~~ 110 (614)
+.|||.|..|+.+|..|+++ |++|+++++.+.
T Consensus 3 I~vIGlG~~G~~lA~~La~~-G~~V~~~d~~~~ 34 (411)
T TIGR03026 3 IAVIGLGYVGLPLAALLADL-GHEVTGVDIDQE 34 (411)
T ss_pred EEEECCCchhHHHHHHHHhc-CCeEEEEECCHH
Confidence 78999999999999999998 999999987643
No 418
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=74.48 E-value=3.2 Score=39.80 Aligned_cols=35 Identities=14% Similarity=0.260 Sum_probs=30.7
Q ss_pred cccEEEECCCCchHHHHHHHhcCCCC-eEEEecCCCC
Q psy1040 75 EYDFVVVGGGVAGPVVAGRLVENPNW-KVLLLEAGPD 110 (614)
Q Consensus 75 ~yDvIVVGsG~aG~~~A~~Lae~~G~-~VLlLEaG~~ 110 (614)
+.-|+|||.|..|+.+|..|+.. |. ++.|++....
T Consensus 21 ~~~VlviG~GglGs~ia~~La~~-Gv~~i~lvD~d~v 56 (202)
T TIGR02356 21 NSHVLIIGAGGLGSPAALYLAGA-GVGTIVIVDDDHV 56 (202)
T ss_pred CCCEEEECCCHHHHHHHHHHHHc-CCCeEEEecCCEE
Confidence 46799999999999999999999 87 8999987643
No 419
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=74.33 E-value=3.5 Score=44.84 Aligned_cols=35 Identities=26% Similarity=0.346 Sum_probs=32.0
Q ss_pred ccEEEECCCCchHHHHHHHhcCCCCeEEEecCCCCC
Q psy1040 76 YDFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGPDE 111 (614)
Q Consensus 76 yDvIVVGsG~aG~~~A~~Lae~~G~~VLlLEaG~~~ 111 (614)
-.|+|||+|.+|.-+|..|++. |.+|.++=|.+..
T Consensus 176 KrV~VIG~GaSA~di~~~l~~~-ga~vt~~qRs~~~ 210 (443)
T COG2072 176 KRVLVIGAGASAVDIAPELAEV-GASVTLSQRSPPH 210 (443)
T ss_pred CeEEEECCCccHHHHHHHHHhc-CCeeEEEecCCCc
Confidence 4799999999999999999999 9999999988663
No 420
>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A.
Probab=74.18 E-value=3.7 Score=36.67 Aligned_cols=32 Identities=19% Similarity=0.406 Sum_probs=26.9
Q ss_pred EEEECCCCchHHHHHHHhcCCCCeEEEecCCCC
Q psy1040 78 FVVVGGGVAGPVVAGRLVENPNWKVLLLEAGPD 110 (614)
Q Consensus 78 vIVVGsG~aG~~~A~~Lae~~G~~VLlLEaG~~ 110 (614)
.+|+|+|..+..+|.-++.- |++|.|+|--+.
T Consensus 1 L~I~GaG~va~al~~la~~l-g~~v~v~d~r~e 32 (136)
T PF13478_consen 1 LVIFGAGHVARALARLAALL-GFRVTVVDPRPE 32 (136)
T ss_dssp EEEES-STCHHHHHHHHHHC-TEEEEEEES-CC
T ss_pred CEEEeCcHHHHHHHHHHHhC-CCEEEEEcCCcc
Confidence 48999999999999999988 999999996644
No 421
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=73.70 E-value=3 Score=46.01 Aligned_cols=32 Identities=25% Similarity=0.429 Sum_probs=29.7
Q ss_pred EEEECCCCchHHHHHHHhcCCCCeEEEecCCCC
Q psy1040 78 FVVVGGGVAGPVVAGRLVENPNWKVLLLEAGPD 110 (614)
Q Consensus 78 vIVVGsG~aG~~~A~~Lae~~G~~VLlLEaG~~ 110 (614)
+-|||+|..|..+|..|+.+ |++|.|.|+.+.
T Consensus 8 V~VIGaG~MG~gIA~~la~a-G~~V~l~d~~~e 39 (503)
T TIGR02279 8 VAVIGAGAMGAGIAQVAASA-GHQVLLYDIRAE 39 (503)
T ss_pred EEEECcCHHHHHHHHHHHhC-CCeEEEEeCCHH
Confidence 88999999999999999999 999999997644
No 422
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=73.41 E-value=3.4 Score=38.27 Aligned_cols=33 Identities=24% Similarity=0.251 Sum_probs=28.3
Q ss_pred ccEEEECCCCchHHHHHHHhcCCCCeEEEecCCC
Q psy1040 76 YDFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGP 109 (614)
Q Consensus 76 yDvIVVGsG~aG~~~A~~Lae~~G~~VLlLEaG~ 109 (614)
.-|+|+|+|.+|..||.-|... |.+|.++|...
T Consensus 21 ~~vvv~G~G~vg~gA~~~~~~l-Ga~v~~~d~~~ 53 (168)
T PF01262_consen 21 AKVVVTGAGRVGQGAAEIAKGL-GAEVVVPDERP 53 (168)
T ss_dssp -EEEEESTSHHHHHHHHHHHHT-T-EEEEEESSH
T ss_pred eEEEEECCCHHHHHHHHHHhHC-CCEEEeccCCH
Confidence 5799999999999999999988 99999999753
No 423
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=72.88 E-value=3.5 Score=44.37 Aligned_cols=32 Identities=19% Similarity=0.268 Sum_probs=29.3
Q ss_pred EEEECCCCchHHHHHHHhcCCCCeEEEecCCCC
Q psy1040 78 FVVVGGGVAGPVVAGRLVENPNWKVLLLEAGPD 110 (614)
Q Consensus 78 vIVVGsG~aG~~~A~~Lae~~G~~VLlLEaG~~ 110 (614)
+.|||.|..|+.+|..|+++ |++|.++++.+.
T Consensus 6 I~VIGlG~~G~~~A~~La~~-G~~V~~~D~~~~ 37 (415)
T PRK11064 6 ISVIGLGYIGLPTAAAFASR-QKQVIGVDINQH 37 (415)
T ss_pred EEEECcchhhHHHHHHHHhC-CCEEEEEeCCHH
Confidence 78999999999999999999 999999997543
No 424
>PRK08328 hypothetical protein; Provisional
Probab=72.79 E-value=3.5 Score=40.48 Aligned_cols=34 Identities=29% Similarity=0.365 Sum_probs=29.1
Q ss_pred cccEEEECCCCchHHHHHHHhcCCCC-eEEEecCCC
Q psy1040 75 EYDFVVVGGGVAGPVVAGRLVENPNW-KVLLLEAGP 109 (614)
Q Consensus 75 ~yDvIVVGsG~aG~~~A~~Lae~~G~-~VLlLEaG~ 109 (614)
..-|+|||+|..|+.+|..|+.. |. ++.|++...
T Consensus 27 ~~~VlIiG~GGlGs~ia~~La~~-Gvg~i~lvD~D~ 61 (231)
T PRK08328 27 KAKVAVVGVGGLGSPVAYYLAAA-GVGRILLIDEQT 61 (231)
T ss_pred CCcEEEECCCHHHHHHHHHHHHc-CCCEEEEEcCCc
Confidence 35699999999999999999998 86 688887553
No 425
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=72.46 E-value=3.4 Score=42.54 Aligned_cols=32 Identities=22% Similarity=0.387 Sum_probs=29.2
Q ss_pred cEEEECCCCchHHHHHHHhcCCCCeEEEecCCC
Q psy1040 77 DFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGP 109 (614)
Q Consensus 77 DvIVVGsG~aG~~~A~~Lae~~G~~VLlLEaG~ 109 (614)
.+.|||+|..|..+|.+|+++ |++|.+..+..
T Consensus 6 ~I~iiG~G~~G~~lA~~l~~~-G~~V~~~~r~~ 37 (308)
T PRK14619 6 TIAILGAGAWGSTLAGLASAN-GHRVRVWSRRS 37 (308)
T ss_pred EEEEECccHHHHHHHHHHHHC-CCEEEEEeCCC
Confidence 488999999999999999999 99999998753
No 426
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=72.36 E-value=3.5 Score=47.70 Aligned_cols=33 Identities=18% Similarity=0.309 Sum_probs=29.9
Q ss_pred cEEEECCCCchHHHHHHHhcCCCCeEEEecCCCC
Q psy1040 77 DFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGPD 110 (614)
Q Consensus 77 DvIVVGsG~aG~~~A~~Lae~~G~~VLlLEaG~~ 110 (614)
-+.|||+|..|.-+|..+|.+ |++|.|+|.-+.
T Consensus 315 ~v~ViGaG~mG~gIA~~~a~~-G~~V~l~d~~~~ 347 (715)
T PRK11730 315 QAAVLGAGIMGGGIAYQSASK-GVPVIMKDINQK 347 (715)
T ss_pred eEEEECCchhHHHHHHHHHhC-CCeEEEEeCCHH
Confidence 388999999999999999999 999999997643
No 427
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=72.26 E-value=3.6 Score=44.97 Aligned_cols=32 Identities=16% Similarity=0.209 Sum_probs=29.9
Q ss_pred cEEEECCCCchHHHHHHHhcCCCCeEEEecCCC
Q psy1040 77 DFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGP 109 (614)
Q Consensus 77 DvIVVGsG~aG~~~A~~Lae~~G~~VLlLEaG~ 109 (614)
.|+|||+|..|+=+|..|++. +.+|.++.+++
T Consensus 206 ~VvVVG~G~Sg~diA~~L~~~-a~~V~l~~r~~ 237 (461)
T PLN02172 206 VVVVIGNFASGADISRDIAKV-AKEVHIASRAS 237 (461)
T ss_pred EEEEECCCcCHHHHHHHHHHh-CCeEEEEEeec
Confidence 599999999999999999998 89999999874
No 428
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=72.12 E-value=3.9 Score=40.37 Aligned_cols=35 Identities=20% Similarity=0.203 Sum_probs=30.2
Q ss_pred cccEEEECCCCchHHHHHHHhcCCCC-eEEEecCCCC
Q psy1040 75 EYDFVVVGGGVAGPVVAGRLVENPNW-KVLLLEAGPD 110 (614)
Q Consensus 75 ~yDvIVVGsG~aG~~~A~~Lae~~G~-~VLlLEaG~~ 110 (614)
..-|+|||+|..|+.+|..|+.. |. ++.+++....
T Consensus 24 ~~~VlvvG~GglGs~va~~La~~-Gvg~i~lvD~D~v 59 (240)
T TIGR02355 24 ASRVLIVGLGGLGCAASQYLAAA-GVGNLTLLDFDTV 59 (240)
T ss_pred CCcEEEECcCHHHHHHHHHHHHc-CCCEEEEEeCCcc
Confidence 46899999999999999999998 86 7888886644
No 429
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=71.65 E-value=4 Score=42.02 Aligned_cols=33 Identities=21% Similarity=0.401 Sum_probs=29.0
Q ss_pred cEEEECCCCchHHHHHHHhcCCC--CeEEEecCCCC
Q psy1040 77 DFVVVGGGVAGPVVAGRLVENPN--WKVLLLEAGPD 110 (614)
Q Consensus 77 DvIVVGsG~aG~~~A~~Lae~~G--~~VLlLEaG~~ 110 (614)
.+.|||+|..|+++|+.|+.. | ..|.|+++...
T Consensus 2 kI~IIGaG~VG~~~a~~l~~~-g~~~ev~l~D~~~~ 36 (308)
T cd05292 2 KVAIVGAGFVGSTTAYALLLR-GLASEIVLVDINKA 36 (308)
T ss_pred EEEEECCCHHHHHHHHHHHHc-CCCCEEEEEECCch
Confidence 378999999999999999998 8 48999998643
No 430
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=71.52 E-value=4.2 Score=39.54 Aligned_cols=31 Identities=26% Similarity=0.316 Sum_probs=27.7
Q ss_pred EEEEC-CCCchHHHHHHHhcCCCCeEEEecCCC
Q psy1040 78 FVVVG-GGVAGPVVAGRLVENPNWKVLLLEAGP 109 (614)
Q Consensus 78 vIVVG-sG~aG~~~A~~Lae~~G~~VLlLEaG~ 109 (614)
+.||| +|..|..+|..|+++ |.+|.+..+.+
T Consensus 3 I~IIGG~G~mG~ala~~L~~~-G~~V~v~~r~~ 34 (219)
T TIGR01915 3 IAVLGGTGDQGKGLALRLAKA-GNKIIIGSRDL 34 (219)
T ss_pred EEEEcCCCHHHHHHHHHHHhC-CCEEEEEEcCH
Confidence 68997 799999999999998 99999987754
No 431
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=71.26 E-value=3.7 Score=44.64 Aligned_cols=31 Identities=23% Similarity=0.221 Sum_probs=28.9
Q ss_pred EEEECCCCchHHHHHHHhcCCCCeEEEecCCC
Q psy1040 78 FVVVGGGVAGPVVAGRLVENPNWKVLLLEAGP 109 (614)
Q Consensus 78 vIVVGsG~aG~~~A~~Lae~~G~~VLlLEaG~ 109 (614)
++|+|+|..|.++|..|++. |.+|++.++..
T Consensus 8 v~v~G~g~~G~s~a~~l~~~-G~~V~~~d~~~ 38 (447)
T PRK02472 8 VLVLGLAKSGYAAAKLLHKL-GANVTVNDGKP 38 (447)
T ss_pred EEEEeeCHHHHHHHHHHHHC-CCEEEEEcCCC
Confidence 79999999999999999999 99999998764
No 432
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=71.17 E-value=4.2 Score=41.53 Aligned_cols=31 Identities=29% Similarity=0.557 Sum_probs=28.5
Q ss_pred EEEECCCCchHHHHHHHhcCCCCeEEEecCCC
Q psy1040 78 FVVVGGGVAGPVVAGRLVENPNWKVLLLEAGP 109 (614)
Q Consensus 78 vIVVGsG~aG~~~A~~Lae~~G~~VLlLEaG~ 109 (614)
+-|||||..|.-+|..+|.. |++|.+.+.-.
T Consensus 6 v~ViGaG~MG~gIA~~~A~~-G~~V~l~D~~~ 36 (307)
T COG1250 6 VAVIGAGVMGAGIAAVFALA-GYDVVLKDISP 36 (307)
T ss_pred EEEEcccchhHHHHHHHhhc-CCceEEEeCCH
Confidence 77999999999999999996 99999999763
No 433
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=71.15 E-value=3.8 Score=47.30 Aligned_cols=33 Identities=15% Similarity=0.286 Sum_probs=30.1
Q ss_pred cEEEECCCCchHHHHHHHhcCCCCeEEEecCCCC
Q psy1040 77 DFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGPD 110 (614)
Q Consensus 77 DvIVVGsG~aG~~~A~~Lae~~G~~VLlLEaG~~ 110 (614)
-+.|||+|..|..+|..+|.+ |+.|.|+|.-..
T Consensus 315 ~v~ViGaG~mG~gIA~~~a~~-G~~V~l~d~~~~ 347 (714)
T TIGR02437 315 QAAVLGAGIMGGGIAYQSASK-GTPIVMKDINQH 347 (714)
T ss_pred eEEEECCchHHHHHHHHHHhC-CCeEEEEeCCHH
Confidence 489999999999999999999 999999997643
No 434
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=71.12 E-value=11 Score=39.61 Aligned_cols=57 Identities=19% Similarity=0.352 Sum_probs=44.2
Q ss_pred CCCeEEEcccEEEEEEEcCCCCeEEEEEEEeCCCCceEEEEeccEEEEccCCC-ChHHHHH
Q psy1040 282 QDNLKVQLNAHVMKLNIDPKTKRALSVQFKDTNTNEIKTVKAKKEIILTAGAI-GSPQLLM 341 (614)
Q Consensus 282 ~~n~~I~~~~~V~~I~~d~~~~ra~GV~~~~~~~g~~~~v~A~k~VVlaaG~i-~sp~LLl 341 (614)
+++++++.++.|.++.-+. +|+ .-+.+.+..+|+..+++.+ .||||+|-= ..|.+|-
T Consensus 290 ~~~v~l~~~~ev~~~~~~G-~g~-~~l~~~~~~~~~~~t~~~D-~vIlATGY~~~~P~fL~ 347 (436)
T COG3486 290 KPDVRLLSLSEVQSVEPAG-DGR-YRLTLRHHETGELETVETD-AVILATGYRRAVPSFLE 347 (436)
T ss_pred CCCeeeccccceeeeecCC-Cce-EEEEEeeccCCCceEEEee-EEEEecccccCCchhhh
Confidence 6789999999999998774 355 5666777656888999998 899999965 4565543
No 435
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=71.08 E-value=3.9 Score=45.52 Aligned_cols=31 Identities=32% Similarity=0.410 Sum_probs=28.4
Q ss_pred cEEEECCCCchHHHHHHHhcCCCCeEEEecCC
Q psy1040 77 DFVVVGGGVAGPVVAGRLVENPNWKVLLLEAG 108 (614)
Q Consensus 77 DvIVVGsG~aG~~~A~~Lae~~G~~VLlLEaG 108 (614)
-++|+|+|.+|.++|+.|++. |.+|.++.|-
T Consensus 381 ~vlIlGaGGagrAia~~L~~~-G~~V~i~nR~ 411 (529)
T PLN02520 381 LFVVIGAGGAGKALAYGAKEK-GARVVIANRT 411 (529)
T ss_pred EEEEECCcHHHHHHHHHHHHC-CCEEEEEcCC
Confidence 489999999999999999998 9999999764
No 436
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=70.81 E-value=4 Score=45.14 Aligned_cols=32 Identities=28% Similarity=0.437 Sum_probs=29.6
Q ss_pred EEEECCCCchHHHHHHHhcCCCCeEEEecCCCC
Q psy1040 78 FVVVGGGVAGPVVAGRLVENPNWKVLLLEAGPD 110 (614)
Q Consensus 78 vIVVGsG~aG~~~A~~Lae~~G~~VLlLEaG~~ 110 (614)
+-|||+|..|..+|..|+.+ |+.|.|.|+-+.
T Consensus 10 V~VIGaG~MG~gIA~~la~a-G~~V~l~D~~~e 41 (507)
T PRK08268 10 VAVIGAGAMGAGIAQVAAQA-GHTVLLYDARAG 41 (507)
T ss_pred EEEECCCHHHHHHHHHHHhC-CCeEEEEeCCHH
Confidence 78999999999999999999 999999997654
No 437
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=70.78 E-value=3.5 Score=42.01 Aligned_cols=58 Identities=17% Similarity=0.145 Sum_probs=47.7
Q ss_pred chhhhcCCCeEEEcccEEEEEEEcCCCCeEEEEEEEeCCCCceEEEEeccEEEEccCCCChHHH
Q psy1040 276 LRDKYKQDNLKVQLNAHVMKLNIDPKTKRALSVQFKDTNTNEIKTVKAKKEIILTAGAIGSPQL 339 (614)
Q Consensus 276 L~~~~~~~n~~I~~~~~V~~I~~d~~~~ra~GV~~~~~~~g~~~~v~A~k~VVlaaG~i~sp~L 339 (614)
|....++.|..++++-+|.+..+. +++|+.|.+++ +....++|+ .+|||+|+|-|--|
T Consensus 264 L~~~f~~~Gg~~m~Gd~V~~a~~~--~~~v~~i~trn---~~diP~~a~-~~VLAsGsffskGL 321 (421)
T COG3075 264 LQRQFEQLGGLWMPGDEVKKATCK--GGRVTEIYTRN---HADIPLRAD-FYVLASGSFFSKGL 321 (421)
T ss_pred HHHHHHHcCceEecCCceeeeeee--CCeEEEEEecc---cccCCCChh-Heeeeccccccccc
Confidence 445556788999999999999998 78999998874 566789996 89999999877543
No 438
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=70.42 E-value=4.8 Score=41.40 Aligned_cols=32 Identities=25% Similarity=0.481 Sum_probs=28.4
Q ss_pred EEEECCCCchHHHHHHHhcCCC--CeEEEecCCCC
Q psy1040 78 FVVVGGGVAGPVVAGRLVENPN--WKVLLLEAGPD 110 (614)
Q Consensus 78 vIVVGsG~aG~~~A~~Lae~~G--~~VLlLEaG~~ 110 (614)
+.|||+|..|.++|+.|++. | ..|.|+++-..
T Consensus 3 I~IIGaG~vG~~~a~~l~~~-g~~~ei~l~D~~~~ 36 (306)
T cd05291 3 VVIIGAGHVGSSFAYSLVNQ-GIADELVLIDINEE 36 (306)
T ss_pred EEEECCCHHHHHHHHHHHhc-CCCCEEEEEeCCcc
Confidence 78999999999999999998 7 47999998644
No 439
>KOG2018|consensus
Probab=70.24 E-value=4.5 Score=40.65 Aligned_cols=30 Identities=37% Similarity=0.601 Sum_probs=26.4
Q ss_pred cccEEEECCCCchHHHHHHHhcCCCC-eEEEec
Q psy1040 75 EYDFVVVGGGVAGPVVAGRLVENPNW-KVLLLE 106 (614)
Q Consensus 75 ~yDvIVVGsG~aG~~~A~~Lae~~G~-~VLlLE 106 (614)
+| |||||+|..|+-+|..|.+. |. |+.+++
T Consensus 75 sy-VVVVG~GgVGSwv~nmL~RS-G~qKi~iVD 105 (430)
T KOG2018|consen 75 SY-VVVVGAGGVGSWVANMLLRS-GVQKIRIVD 105 (430)
T ss_pred cE-EEEEecCchhHHHHHHHHHh-cCceEEEec
Confidence 45 89999999999999999998 75 788876
No 440
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=70.17 E-value=4.3 Score=43.41 Aligned_cols=34 Identities=29% Similarity=0.253 Sum_probs=29.9
Q ss_pred ccEEEECCCCchHHHHHHHhcCCCCeEEEecCCCC
Q psy1040 76 YDFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGPD 110 (614)
Q Consensus 76 yDvIVVGsG~aG~~~A~~Lae~~G~~VLlLEaG~~ 110 (614)
-.|+|+|.|..|..+|..|... |.+|+++|.-+.
T Consensus 203 ktVvViG~G~IG~~va~~ak~~-Ga~ViV~d~d~~ 236 (413)
T cd00401 203 KVAVVAGYGDVGKGCAQSLRGQ-GARVIVTEVDPI 236 (413)
T ss_pred CEEEEECCCHHHHHHHHHHHHC-CCEEEEEECChh
Confidence 3689999999999999999888 999999987543
No 441
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=70.14 E-value=4.3 Score=39.27 Aligned_cols=34 Identities=18% Similarity=0.230 Sum_probs=29.8
Q ss_pred cccEEEECCCCchHHHHHHHhcCCCC-eEEEecCCC
Q psy1040 75 EYDFVVVGGGVAGPVVAGRLVENPNW-KVLLLEAGP 109 (614)
Q Consensus 75 ~yDvIVVGsG~aG~~~A~~Lae~~G~-~VLlLEaG~ 109 (614)
..-|+|||+|..|+.+|..|++. |. ++.|++...
T Consensus 28 ~~~V~ViG~GglGs~ia~~La~~-Gvg~i~lvD~D~ 62 (212)
T PRK08644 28 KAKVGIAGAGGLGSNIAVALARS-GVGNLKLVDFDV 62 (212)
T ss_pred CCCEEEECcCHHHHHHHHHHHHc-CCCeEEEEeCCE
Confidence 45799999999999999999998 87 599998763
No 442
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=70.09 E-value=4.3 Score=42.50 Aligned_cols=32 Identities=25% Similarity=0.398 Sum_probs=29.2
Q ss_pred EEEECCCCchHHHHHHHhcCCCCeEEEecCCCC
Q psy1040 78 FVVVGGGVAGPVVAGRLVENPNWKVLLLEAGPD 110 (614)
Q Consensus 78 vIVVGsG~aG~~~A~~Lae~~G~~VLlLEaG~~ 110 (614)
+.|||+|..|++.|.-||+. |+.|+.++.-+.
T Consensus 3 I~viGtGYVGLv~g~~lA~~-GHeVv~vDid~~ 34 (414)
T COG1004 3 ITVIGTGYVGLVTGACLAEL-GHEVVCVDIDES 34 (414)
T ss_pred eEEECCchHHHHHHHHHHHc-CCeEEEEeCCHH
Confidence 67999999999999999999 999999997643
No 443
>PRK08223 hypothetical protein; Validated
Probab=70.05 E-value=4.3 Score=41.05 Aligned_cols=35 Identities=14% Similarity=0.059 Sum_probs=30.0
Q ss_pred cccEEEECCCCchHHHHHHHhcCCCC-eEEEecCCCC
Q psy1040 75 EYDFVVVGGGVAGPVVAGRLVENPNW-KVLLLEAGPD 110 (614)
Q Consensus 75 ~yDvIVVGsG~aG~~~A~~Lae~~G~-~VLlLEaG~~ 110 (614)
+.-|+|||.|.-|+.+|..||.. |. ++.|++-..-
T Consensus 27 ~s~VlIvG~GGLGs~va~~LA~a-GVG~i~lvD~D~V 62 (287)
T PRK08223 27 NSRVAIAGLGGVGGIHLLTLARL-GIGKFTIADFDVF 62 (287)
T ss_pred cCCEEEECCCHHHHHHHHHHHHh-CCCeEEEEeCCCc
Confidence 46799999999999999999999 87 6888886543
No 444
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=69.51 E-value=4.5 Score=44.69 Aligned_cols=32 Identities=28% Similarity=0.475 Sum_probs=29.3
Q ss_pred cEEEECCCCchHHHHHHHhcCCCCeEEEecCCC
Q psy1040 77 DFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGP 109 (614)
Q Consensus 77 DvIVVGsG~aG~~~A~~Lae~~G~~VLlLEaG~ 109 (614)
-+-|||+|..|...|..|+.+ |++|.|.++.+
T Consensus 6 kIavIG~G~MG~~iA~~la~~-G~~V~v~D~~~ 37 (495)
T PRK07531 6 KAACIGGGVIGGGWAARFLLA-GIDVAVFDPHP 37 (495)
T ss_pred EEEEECcCHHHHHHHHHHHhC-CCeEEEEeCCH
Confidence 378999999999999999999 99999999754
No 445
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=69.15 E-value=5.4 Score=39.41 Aligned_cols=35 Identities=23% Similarity=0.313 Sum_probs=28.3
Q ss_pred CcccEEEECCCCchHHHHHHHhcCC----------CCeEEEecCC
Q psy1040 74 EEYDFVVVGGGVAGPVVAGRLVENP----------NWKVLLLEAG 108 (614)
Q Consensus 74 ~~yDvIVVGsG~aG~~~A~~Lae~~----------G~~VLlLEaG 108 (614)
....|+|||+|..|+.+|..||+.. |.++.|++..
T Consensus 10 ~~~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D 54 (244)
T TIGR03736 10 RPVSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDD 54 (244)
T ss_pred CCCeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEECCC
Confidence 4578999999999999999999861 2377887754
No 446
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=69.10 E-value=4.7 Score=39.44 Aligned_cols=34 Identities=26% Similarity=0.297 Sum_probs=29.4
Q ss_pred cccEEEECCCCchHHHHHHHhcCCCC-eEEEecCCC
Q psy1040 75 EYDFVVVGGGVAGPVVAGRLVENPNW-KVLLLEAGP 109 (614)
Q Consensus 75 ~yDvIVVGsG~aG~~~A~~Lae~~G~-~VLlLEaG~ 109 (614)
+.-|+|||.|..|+.+|..|+.. |. ++.|++...
T Consensus 21 ~~~VlivG~GglGs~va~~La~~-Gvg~i~lvD~D~ 55 (228)
T cd00757 21 NARVLVVGAGGLGSPAAEYLAAA-GVGKLGLVDDDV 55 (228)
T ss_pred CCcEEEECCCHHHHHHHHHHHHc-CCCEEEEEcCCE
Confidence 45799999999999999999998 87 788887553
No 447
>KOG2304|consensus
Probab=69.00 E-value=4.9 Score=38.66 Aligned_cols=34 Identities=26% Similarity=0.422 Sum_probs=30.5
Q ss_pred ccEEEECCCCchHHHHHHHhcCCCCeEEEecCCCC
Q psy1040 76 YDFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGPD 110 (614)
Q Consensus 76 yDvIVVGsG~aG~~~A~~Lae~~G~~VLlLEaG~~ 110 (614)
--|-|||+|-.|+-+|.-.|.. |++|.|.++...
T Consensus 12 ~~V~ivGaG~MGSGIAQv~a~s-g~~V~l~d~~~~ 45 (298)
T KOG2304|consen 12 KNVAIVGAGQMGSGIAQVAATS-GLNVWLVDANED 45 (298)
T ss_pred cceEEEcccccchhHHHHHHhc-CCceEEecCCHH
Confidence 4688999999999999999988 999999998744
No 448
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=68.88 E-value=4.6 Score=41.06 Aligned_cols=33 Identities=18% Similarity=0.232 Sum_probs=29.9
Q ss_pred ccEEEECCCCchHHHHHHHhcCCCCeEEEecCCC
Q psy1040 76 YDFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGP 109 (614)
Q Consensus 76 yDvIVVGsG~aG~~~A~~Lae~~G~~VLlLEaG~ 109 (614)
--++|||.|..|..+|.+|... |.+|.+.++-.
T Consensus 152 k~v~IiG~G~iG~avA~~L~~~-G~~V~v~~R~~ 184 (287)
T TIGR02853 152 SNVMVLGFGRTGMTIARTFSAL-GARVFVGARSS 184 (287)
T ss_pred CEEEEEcChHHHHHHHHHHHHC-CCEEEEEeCCH
Confidence 4689999999999999999988 99999998764
No 449
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=68.82 E-value=5 Score=39.79 Aligned_cols=34 Identities=21% Similarity=0.209 Sum_probs=30.0
Q ss_pred cccEEEECCCCchHHHHHHHhcCCCC-eEEEecCCC
Q psy1040 75 EYDFVVVGGGVAGPVVAGRLVENPNW-KVLLLEAGP 109 (614)
Q Consensus 75 ~yDvIVVGsG~aG~~~A~~Lae~~G~-~VLlLEaG~ 109 (614)
+.-|+|||.|..|+.+|..|+.. |. ++.|++...
T Consensus 32 ~~~VliiG~GglGs~va~~La~~-Gvg~i~lvD~D~ 66 (245)
T PRK05690 32 AARVLVVGLGGLGCAASQYLAAA-GVGTLTLVDFDT 66 (245)
T ss_pred CCeEEEECCCHHHHHHHHHHHHc-CCCEEEEEcCCE
Confidence 46899999999999999999998 86 788888653
No 450
>COG3976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=68.54 E-value=3 Score=35.83 Aligned_cols=34 Identities=12% Similarity=0.218 Sum_probs=27.5
Q ss_pred cccCCCCCCCCCCCchhhHHhhhcCcchHHHHHHHHHHHHhh
Q psy1040 10 SSVMDQPTCSCDYQDTAYIARSCGSSLNVTLFMTLVDVMLRT 51 (614)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 51 (614)
-+|++.|+.++|+++|+|.++.. ++..++-+|..
T Consensus 99 ~eivkAQStdVD~iSgAT~tS~a--------iI~svekaLek 132 (135)
T COG3976 99 DEIVKAQSTDVDIISGATLTSRA--------IIQSVEKALEK 132 (135)
T ss_pred HHHhhccccccceeeccccchHH--------HHHHHHHHHhc
Confidence 36788899999999999999887 66666666653
No 451
>PRK08017 oxidoreductase; Provisional
Probab=68.53 E-value=5.5 Score=39.28 Aligned_cols=31 Identities=23% Similarity=0.269 Sum_probs=28.0
Q ss_pred EEEECC-CCchHHHHHHHhcCCCCeEEEecCCC
Q psy1040 78 FVVVGG-GVAGPVVAGRLVENPNWKVLLLEAGP 109 (614)
Q Consensus 78 vIVVGs-G~aG~~~A~~Lae~~G~~VLlLEaG~ 109 (614)
++|+|+ |..|..+|.+|+++ |++|+++.+..
T Consensus 5 vlVtGasg~IG~~la~~l~~~-g~~v~~~~r~~ 36 (256)
T PRK08017 5 VLITGCSSGIGLEAALELKRR-GYRVLAACRKP 36 (256)
T ss_pred EEEECCCChHHHHHHHHHHHC-CCEEEEEeCCH
Confidence 899998 99999999999998 99999987653
No 452
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=68.53 E-value=4.8 Score=43.94 Aligned_cols=32 Identities=22% Similarity=0.175 Sum_probs=29.1
Q ss_pred cEEEECCCCchHHHHHHHhcCCCC-eEEEecCCC
Q psy1040 77 DFVVVGGGVAGPVVAGRLVENPNW-KVLLLEAGP 109 (614)
Q Consensus 77 DvIVVGsG~aG~~~A~~Lae~~G~-~VLlLEaG~ 109 (614)
.++|||+|..|+-+|..|++. |. +|.|+++.+
T Consensus 275 ~VvViGgG~~g~e~A~~l~~~-G~~~Vtlv~~~~ 307 (457)
T PRK11749 275 RVVVIGGGNTAMDAARTAKRL-GAESVTIVYRRG 307 (457)
T ss_pred eEEEECCCHHHHHHHHHHHHc-CCCeEEEeeecC
Confidence 699999999999999999998 87 899999764
No 453
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=68.00 E-value=5.1 Score=41.06 Aligned_cols=32 Identities=25% Similarity=0.417 Sum_probs=28.0
Q ss_pred EEEECCCCchHHHHHHHhcCCCC-eEEEecCCCC
Q psy1040 78 FVVVGGGVAGPVVAGRLVENPNW-KVLLLEAGPD 110 (614)
Q Consensus 78 vIVVGsG~aG~~~A~~Lae~~G~-~VLlLEaG~~ 110 (614)
+.|||+|..|..+|..|+.. |+ .|.|+|..+.
T Consensus 1 I~IIGaG~vG~~ia~~la~~-~l~eV~L~Di~e~ 33 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALK-ELGDVVLLDIVEG 33 (300)
T ss_pred CEEECCCHHHHHHHHHHHhC-CCcEEEEEeCCCc
Confidence 46999999999999999987 76 9999998743
No 454
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=67.53 E-value=4.4 Score=41.49 Aligned_cols=35 Identities=34% Similarity=0.378 Sum_probs=29.9
Q ss_pred cccEEEECCCCchHHHHHHHhcCCCCeEEEecCCCC
Q psy1040 75 EYDFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGPD 110 (614)
Q Consensus 75 ~yDvIVVGsG~aG~~~A~~Lae~~G~~VLlLEaG~~ 110 (614)
--||.|||+|.+|.-+|.-||-. =..|.|||=.+.
T Consensus 354 gK~VAVIGGGNSGvEAAIDLAGi-v~hVtllEF~~e 388 (520)
T COG3634 354 GKRVAVIGGGNSGVEAAIDLAGI-VEHVTLLEFAPE 388 (520)
T ss_pred CceEEEECCCcchHHHHHhHHhh-hheeeeeecchh
Confidence 35999999999999999999965 457999996654
No 455
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=67.40 E-value=6.2 Score=40.85 Aligned_cols=33 Identities=27% Similarity=0.419 Sum_probs=29.1
Q ss_pred cEEEECCCCchHHHHHHHhcCCCC-eEEEecCCCC
Q psy1040 77 DFVVVGGGVAGPVVAGRLVENPNW-KVLLLEAGPD 110 (614)
Q Consensus 77 DvIVVGsG~aG~~~A~~Lae~~G~-~VLlLEaG~~ 110 (614)
=+.|||+|..|..+|+.|+.. |. +|.|+|.-+.
T Consensus 8 KI~IIGaG~vG~~ia~~la~~-gl~~i~LvDi~~~ 41 (321)
T PTZ00082 8 KISLIGSGNIGGVMAYLIVLK-NLGDVVLFDIVKN 41 (321)
T ss_pred EEEEECCCHHHHHHHHHHHhC-CCCeEEEEeCCCc
Confidence 489999999999999999987 86 8999997654
No 456
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=67.33 E-value=5.3 Score=43.67 Aligned_cols=34 Identities=15% Similarity=0.364 Sum_probs=28.8
Q ss_pred cEEEECCCCchHHHHHHHhcC-CCCeEEEecCCCC
Q psy1040 77 DFVVVGGGVAGPVVAGRLVEN-PNWKVLLLEAGPD 110 (614)
Q Consensus 77 DvIVVGsG~aG~~~A~~Lae~-~G~~VLlLEaG~~ 110 (614)
.+.|||+|..|+++|..||+. +|.+|+.+|..+.
T Consensus 3 ~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~ 37 (473)
T PLN02353 3 KICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVP 37 (473)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHH
Confidence 388999999999999999987 2488999986543
No 457
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=67.31 E-value=5 Score=46.51 Aligned_cols=33 Identities=30% Similarity=0.515 Sum_probs=30.0
Q ss_pred cEEEECCCCchHHHHHHHhcCCCCeEEEecCCCC
Q psy1040 77 DFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGPD 110 (614)
Q Consensus 77 DvIVVGsG~aG~~~A~~Lae~~G~~VLlLEaG~~ 110 (614)
-+.|||+|..|.-+|..++.+ |++|.|+|.-+.
T Consensus 337 ~v~ViGaG~MG~gIA~~~a~~-G~~V~l~d~~~~ 369 (737)
T TIGR02441 337 TLAVLGAGLMGAGIAQVSVDK-GLKTVLKDATPA 369 (737)
T ss_pred EEEEECCCHhHHHHHHHHHhC-CCcEEEecCCHH
Confidence 388999999999999999999 999999997644
No 458
>PRK06223 malate dehydrogenase; Reviewed
Probab=67.26 E-value=5.7 Score=40.79 Aligned_cols=32 Identities=22% Similarity=0.396 Sum_probs=28.0
Q ss_pred cEEEECCCCchHHHHHHHhcCCCC-eEEEecCCC
Q psy1040 77 DFVVVGGGVAGPVVAGRLVENPNW-KVLLLEAGP 109 (614)
Q Consensus 77 DvIVVGsG~aG~~~A~~Lae~~G~-~VLlLEaG~ 109 (614)
-+.|||+|..|..+|..|+.. |. .|.|++.-.
T Consensus 4 KI~VIGaG~vG~~ia~~la~~-~~~ev~L~D~~~ 36 (307)
T PRK06223 4 KISIIGAGNVGATLAHLLALK-ELGDVVLFDIVE 36 (307)
T ss_pred EEEEECCCHHHHHHHHHHHhC-CCeEEEEEECCC
Confidence 478999999999999999987 65 999999843
No 459
>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively. This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.
Probab=67.15 E-value=5.9 Score=40.28 Aligned_cols=32 Identities=22% Similarity=0.374 Sum_probs=28.3
Q ss_pred EEEECCCCchHHHHHHHhcCCCC-eEEEecCCCC
Q psy1040 78 FVVVGGGVAGPVVAGRLVENPNW-KVLLLEAGPD 110 (614)
Q Consensus 78 vIVVGsG~aG~~~A~~Lae~~G~-~VLlLEaG~~ 110 (614)
|+|||+|.-|+.+|..|+.. |. ++.+++.+.-
T Consensus 2 VLIvGaGGLGs~vA~~La~a-GVg~ItlvD~D~V 34 (307)
T cd01486 2 CLLLGAGTLGCNVARNLLGW-GVRHITFVDSGKV 34 (307)
T ss_pred EEEECCCHHHHHHHHHHHHc-CCCeEEEECCCEe
Confidence 78999999999999999998 87 7888887643
No 460
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=67.02 E-value=5.8 Score=39.95 Aligned_cols=33 Identities=21% Similarity=0.335 Sum_probs=29.3
Q ss_pred ccEEEECCCCchHHHHHHHhcCCCCeEEEecCCC
Q psy1040 76 YDFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGP 109 (614)
Q Consensus 76 yDvIVVGsG~aG~~~A~~Lae~~G~~VLlLEaG~ 109 (614)
-.++|+|+|.+|..+|..|++. |.+|.++.|..
T Consensus 118 k~vliiGaGg~g~aia~~L~~~-g~~v~v~~R~~ 150 (270)
T TIGR00507 118 QRVLIIGAGGAARAVALPLLKA-DCNVIIANRTV 150 (270)
T ss_pred CEEEEEcCcHHHHHHHHHHHHC-CCEEEEEeCCH
Confidence 3689999999999999999998 99999997753
No 461
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=66.98 E-value=7.4 Score=31.46 Aligned_cols=31 Identities=32% Similarity=0.447 Sum_probs=27.4
Q ss_pred cEEEECCCCchHHHHHHHhcCCCCeEEEecC
Q psy1040 77 DFVVVGGGVAGPVVAGRLVENPNWKVLLLEA 107 (614)
Q Consensus 77 DvIVVGsG~aG~~~A~~Lae~~G~~VLlLEa 107 (614)
.++|+|+|..|..+|..|.+..+.+|.+.++
T Consensus 25 ~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r 55 (86)
T cd05191 25 TVVVLGAGEVGKGIAKLLADEGGKKVVLCDR 55 (86)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence 5999999999999999999873568888887
No 462
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=66.63 E-value=5.4 Score=43.40 Aligned_cols=33 Identities=24% Similarity=0.473 Sum_probs=29.9
Q ss_pred cEEEECCCCchHHHHHHHhcCCCCeEEEecCCCC
Q psy1040 77 DFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGPD 110 (614)
Q Consensus 77 DvIVVGsG~aG~~~A~~Lae~~G~~VLlLEaG~~ 110 (614)
.++|||+|..|..+|..|.+. |.+|.++|+.+.
T Consensus 2 ~viIiG~G~ig~~~a~~L~~~-g~~v~vid~~~~ 34 (453)
T PRK09496 2 KIIIVGAGQVGYTLAENLSGE-NNDVTVIDTDEE 34 (453)
T ss_pred EEEEECCCHHHHHHHHHHHhC-CCcEEEEECCHH
Confidence 489999999999999999998 999999998543
No 463
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=66.53 E-value=5.6 Score=39.10 Aligned_cols=30 Identities=17% Similarity=0.341 Sum_probs=26.6
Q ss_pred EEEECCCCchHHHHHHHhcCCCC-eEEEecCC
Q psy1040 78 FVVVGGGVAGPVVAGRLVENPNW-KVLLLEAG 108 (614)
Q Consensus 78 vIVVGsG~aG~~~A~~Lae~~G~-~VLlLEaG 108 (614)
|+|||+|..|+.++..|+.. |. ++.|++..
T Consensus 2 VlvvG~GGlG~eilk~La~~-Gvg~i~ivD~D 32 (234)
T cd01484 2 VLLVGAGGIGCELLKNLALM-GFGQIHVIDMD 32 (234)
T ss_pred EEEECCCHHHHHHHHHHHHc-CCCeEEEEeCC
Confidence 78999999999999999998 86 68888754
No 464
>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p. This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.
Probab=66.29 E-value=5.9 Score=44.42 Aligned_cols=35 Identities=20% Similarity=0.347 Sum_probs=30.5
Q ss_pred cccEEEECCCCchHHHHHHHhcCCCC-eEEEecCCCC
Q psy1040 75 EYDFVVVGGGVAGPVVAGRLVENPNW-KVLLLEAGPD 110 (614)
Q Consensus 75 ~yDvIVVGsG~aG~~~A~~Lae~~G~-~VLlLEaG~~ 110 (614)
..-|+|||+|.-|+.+|..|+.. |. ++.+++.+.-
T Consensus 338 ~~kVLIvGaGGLGs~VA~~La~~-GVg~ItlVD~D~V 373 (664)
T TIGR01381 338 QLKVLLLGAGTLGCNVARCLIGW-GVRHITFVDNGKV 373 (664)
T ss_pred cCeEEEECCcHHHHHHHHHHHHc-CCCeEEEEcCCEE
Confidence 46799999999999999999998 87 6888887744
No 465
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=66.03 E-value=5.5 Score=40.33 Aligned_cols=30 Identities=20% Similarity=0.157 Sum_probs=27.9
Q ss_pred EEEECCCCchHHHHHHHhcCCCCeEEEecCC
Q psy1040 78 FVVVGGGVAGPVVAGRLVENPNWKVLLLEAG 108 (614)
Q Consensus 78 vIVVGsG~aG~~~A~~Lae~~G~~VLlLEaG 108 (614)
+.|||.|..|..+|..|+++ |.+|.++++.
T Consensus 3 I~IIG~G~mG~sla~~L~~~-g~~V~~~d~~ 32 (279)
T PRK07417 3 IGIVGLGLIGGSLGLDLRSL-GHTVYGVSRR 32 (279)
T ss_pred EEEEeecHHHHHHHHHHHHC-CCEEEEEECC
Confidence 77999999999999999998 9999999865
No 466
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=65.49 E-value=6.6 Score=37.55 Aligned_cols=34 Identities=18% Similarity=0.363 Sum_probs=29.6
Q ss_pred cccEEEECCCCchHHHHHHHhcCCCC-eEEEecCCC
Q psy1040 75 EYDFVVVGGGVAGPVVAGRLVENPNW-KVLLLEAGP 109 (614)
Q Consensus 75 ~yDvIVVGsG~aG~~~A~~Lae~~G~-~VLlLEaG~ 109 (614)
+.-|+|||.|..|+.+|..|+.. |. ++.|++-..
T Consensus 19 ~s~VlviG~gglGsevak~L~~~-GVg~i~lvD~d~ 53 (198)
T cd01485 19 SAKVLIIGAGALGAEIAKNLVLA-GIDSITIVDHRL 53 (198)
T ss_pred hCcEEEECCCHHHHHHHHHHHHc-CCCEEEEEECCc
Confidence 46799999999999999999998 87 588888653
No 467
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=65.43 E-value=6.9 Score=37.10 Aligned_cols=32 Identities=31% Similarity=0.400 Sum_probs=28.1
Q ss_pred ccEEEECC-CCchHHHHHHHhcCCCCeEEEecCC
Q psy1040 76 YDFVVVGG-GVAGPVVAGRLVENPNWKVLLLEAG 108 (614)
Q Consensus 76 yDvIVVGs-G~aG~~~A~~Lae~~G~~VLlLEaG 108 (614)
-.++|+|+ |..|..+|..|++. |.+|.++.|.
T Consensus 29 ~~vlVlGgtG~iG~~~a~~l~~~-g~~V~l~~R~ 61 (194)
T cd01078 29 KTAVVLGGTGPVGQRAAVLLARE-GARVVLVGRD 61 (194)
T ss_pred CEEEEECCCCHHHHHHHHHHHHC-CCEEEEEcCC
Confidence 35899996 99999999999998 9999999764
No 468
>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional
Probab=65.38 E-value=7.3 Score=39.11 Aligned_cols=31 Identities=13% Similarity=0.098 Sum_probs=27.0
Q ss_pred cEEEECCC---CchHHHHHHHhcCCCCeEEEecCC
Q psy1040 77 DFVVVGGG---VAGPVVAGRLVENPNWKVLLLEAG 108 (614)
Q Consensus 77 DvIVVGsG---~aG~~~A~~Lae~~G~~VLlLEaG 108 (614)
=++|.|++ ..|..+|.+|+++ |++|.+..+.
T Consensus 9 ~~lVTGas~~~GIG~aiA~~la~~-Ga~V~~~~r~ 42 (271)
T PRK06505 9 RGLIMGVANDHSIAWGIAKQLAAQ-GAELAFTYQG 42 (271)
T ss_pred EEEEeCCCCCCcHHHHHHHHHHhC-CCEEEEecCc
Confidence 38899987 6899999999999 9999998654
No 469
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=65.35 E-value=5.8 Score=44.52 Aligned_cols=35 Identities=17% Similarity=0.348 Sum_probs=31.5
Q ss_pred cccEEEECCCCchHHHHHHHhcCCCCeEEEecCCCC
Q psy1040 75 EYDFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGPD 110 (614)
Q Consensus 75 ~yDvIVVGsG~aG~~~A~~Lae~~G~~VLlLEaG~~ 110 (614)
+-.+||+|.|.-|..+|.+|.++ |.+|+++|+.+.
T Consensus 417 ~~hiiI~G~G~~G~~la~~L~~~-g~~vvvId~d~~ 451 (558)
T PRK10669 417 CNHALLVGYGRVGSLLGEKLLAA-GIPLVVIETSRT 451 (558)
T ss_pred CCCEEEECCChHHHHHHHHHHHC-CCCEEEEECCHH
Confidence 46799999999999999999998 999999997643
No 470
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=65.33 E-value=13 Score=38.78 Aligned_cols=49 Identities=20% Similarity=0.340 Sum_probs=31.5
Q ss_pred cCCCeEEEcccEEEEEEEcCCCCeEEEEEEEeCCCCceEEEEeccEEEEccC
Q psy1040 281 KQDNLKVQLNAHVMKLNIDPKTKRALSVQFKDTNTNEIKTVKAKKEIILTAG 332 (614)
Q Consensus 281 ~~~n~~I~~~~~V~~I~~d~~~~ra~GV~~~~~~~g~~~~v~A~k~VVlaaG 332 (614)
.+..++|+.++.|+.+..+++ +++ -+.+.+..+++..++.++ .||+|+|
T Consensus 290 g~~~~~l~~~~~v~~~~~~~~-~~~-~l~~~~~~~~~~~~~~~D-~VilATG 338 (341)
T PF13434_consen 290 GRGRLRLLPNTEVTSAEQDGD-GGV-RLTLRHRQTGEEETLEVD-AVILATG 338 (341)
T ss_dssp T---SEEETTEEEEEEEEES--SSE-EEEEEETTT--EEEEEES-EEEE---
T ss_pred CCCCeEEeCCCEEEEEEECCC-CEE-EEEEEECCCCCeEEEecC-EEEEcCC
Confidence 344699999999999998842 333 356666555888899998 7999999
No 471
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=65.13 E-value=6.2 Score=41.20 Aligned_cols=29 Identities=31% Similarity=0.318 Sum_probs=27.2
Q ss_pred EEEECCCCchHHHHHHHhcCCC--------CeEEEecC
Q psy1040 78 FVVVGGGVAGPVVAGRLVENPN--------WKVLLLEA 107 (614)
Q Consensus 78 vIVVGsG~aG~~~A~~Lae~~G--------~~VLlLEa 107 (614)
+.|||+|.-|.++|..|+++ | .+|.|..+
T Consensus 2 I~VIGaG~wGtALA~~la~n-g~~~~~~~~~~V~lw~~ 38 (342)
T TIGR03376 2 VAVVGSGNWGTAIAKIVAEN-ARALPELFEESVRMWVF 38 (342)
T ss_pred EEEECcCHHHHHHHHHHHHc-CCcccccCCceEEEEEe
Confidence 68999999999999999998 8 89999976
No 472
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=64.83 E-value=6.8 Score=39.74 Aligned_cols=31 Identities=32% Similarity=0.381 Sum_probs=27.6
Q ss_pred cEEEECCCCchHHHHHHHhcCCCC-eEEEecCC
Q psy1040 77 DFVVVGGGVAGPVVAGRLVENPNW-KVLLLEAG 108 (614)
Q Consensus 77 DvIVVGsG~aG~~~A~~Lae~~G~-~VLlLEaG 108 (614)
-++|+|+|.++-++|+.|++. |. +|.|+.|-
T Consensus 129 ~vlilGaGGaarAi~~aL~~~-g~~~i~i~nR~ 160 (283)
T PRK14027 129 SVVQVGAGGVGNAVAYALVTH-GVQKLQVADLD 160 (283)
T ss_pred eEEEECCcHHHHHHHHHHHHC-CCCEEEEEcCC
Confidence 589999999999999999998 75 78898775
No 473
>PRK08177 short chain dehydrogenase; Provisional
Probab=64.61 E-value=8.2 Score=37.32 Aligned_cols=32 Identities=28% Similarity=0.552 Sum_probs=27.4
Q ss_pred EEEEC-CCCchHHHHHHHhcCCCCeEEEecCCCC
Q psy1040 78 FVVVG-GGVAGPVVAGRLVENPNWKVLLLEAGPD 110 (614)
Q Consensus 78 vIVVG-sG~aG~~~A~~Lae~~G~~VLlLEaG~~ 110 (614)
++|.| +|..|..+|.+|++. |++|+++.+.+.
T Consensus 4 vlItG~sg~iG~~la~~l~~~-G~~V~~~~r~~~ 36 (225)
T PRK08177 4 ALIIGASRGLGLGLVDRLLER-GWQVTATVRGPQ 36 (225)
T ss_pred EEEeCCCchHHHHHHHHHHhC-CCEEEEEeCCCc
Confidence 67787 577889999999998 999999988754
No 474
>PRK07326 short chain dehydrogenase; Provisional
Probab=64.40 E-value=7.6 Score=37.70 Aligned_cols=30 Identities=23% Similarity=0.392 Sum_probs=26.6
Q ss_pred EEEECC-CCchHHHHHHHhcCCCCeEEEecCC
Q psy1040 78 FVVVGG-GVAGPVVAGRLVENPNWKVLLLEAG 108 (614)
Q Consensus 78 vIVVGs-G~aG~~~A~~Lae~~G~~VLlLEaG 108 (614)
++|+|+ |..|..+|.+|++. |++|+++-+.
T Consensus 9 ilItGatg~iG~~la~~l~~~-g~~V~~~~r~ 39 (237)
T PRK07326 9 ALITGGSKGIGFAIAEALLAE-GYKVAITARD 39 (237)
T ss_pred EEEECCCCcHHHHHHHHHHHC-CCEEEEeeCC
Confidence 788885 89999999999998 9999999764
No 475
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=64.33 E-value=6.7 Score=36.08 Aligned_cols=32 Identities=22% Similarity=0.443 Sum_probs=26.8
Q ss_pred cEEEECCCCchHHHHHHHhcCCCCeEEEecCCC
Q psy1040 77 DFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGP 109 (614)
Q Consensus 77 DvIVVGsG~aG~~~A~~Lae~~G~~VLlLEaG~ 109 (614)
.+-+||-|..|..+|.+|.++ |++|.+.++.+
T Consensus 3 ~Ig~IGlG~mG~~~a~~L~~~-g~~v~~~d~~~ 34 (163)
T PF03446_consen 3 KIGFIGLGNMGSAMARNLAKA-GYEVTVYDRSP 34 (163)
T ss_dssp EEEEE--SHHHHHHHHHHHHT-TTEEEEEESSH
T ss_pred EEEEEchHHHHHHHHHHHHhc-CCeEEeeccch
Confidence 367999999999999999999 99999998663
No 476
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=64.20 E-value=7.9 Score=31.78 Aligned_cols=32 Identities=22% Similarity=0.549 Sum_probs=27.5
Q ss_pred EEEECCCCchHHHHHHHhcCCC---CeEEEe-cCCCC
Q psy1040 78 FVVVGGGVAGPVVAGRLVENPN---WKVLLL-EAGPD 110 (614)
Q Consensus 78 vIVVGsG~aG~~~A~~Lae~~G---~~VLlL-EaG~~ 110 (614)
+.|||+|..|..+|..|.++ | .+|+++ ++.+.
T Consensus 2 I~iIG~G~mg~al~~~l~~~-g~~~~~v~~~~~r~~~ 37 (96)
T PF03807_consen 2 IGIIGAGNMGSALARGLLAS-GIKPHEVIIVSSRSPE 37 (96)
T ss_dssp EEEESTSHHHHHHHHHHHHT-TS-GGEEEEEEESSHH
T ss_pred EEEECCCHHHHHHHHHHHHC-CCCceeEEeeccCcHH
Confidence 56899999999999999998 8 899976 76643
No 477
>PRK06153 hypothetical protein; Provisional
Probab=64.04 E-value=7.8 Score=40.80 Aligned_cols=34 Identities=12% Similarity=0.270 Sum_probs=29.7
Q ss_pred cccEEEECCCCchHHHHHHHhcCCCC-eEEEecCCC
Q psy1040 75 EYDFVVVGGGVAGPVVAGRLVENPNW-KVLLLEAGP 109 (614)
Q Consensus 75 ~yDvIVVGsG~aG~~~A~~Lae~~G~-~VLlLEaG~ 109 (614)
..-|.|||.|..|+.+|..||+. |. ++.|++...
T Consensus 176 ~~~VaIVG~GG~GS~Va~~LAR~-GVgeI~LVD~D~ 210 (393)
T PRK06153 176 GQRIAIIGLGGTGSYILDLVAKT-PVREIHLFDGDD 210 (393)
T ss_pred hCcEEEEcCCccHHHHHHHHHHc-CCCEEEEECCCE
Confidence 45799999999999999999999 65 789988653
No 478
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=63.91 E-value=6.8 Score=39.50 Aligned_cols=32 Identities=16% Similarity=0.216 Sum_probs=28.4
Q ss_pred cEEEECCCCchHHHHHHHhcCCCC-eEEEecCCC
Q psy1040 77 DFVVVGGGVAGPVVAGRLVENPNW-KVLLLEAGP 109 (614)
Q Consensus 77 DvIVVGsG~aG~~~A~~Lae~~G~-~VLlLEaG~ 109 (614)
.++|+|+|.++.++|+.|++. |. +|.|+-|-.
T Consensus 124 ~vlilGaGGaarAi~~aL~~~-g~~~i~i~nR~~ 156 (272)
T PRK12550 124 VVALRGSGGMAKAVAAALRDA-GFTDGTIVARNE 156 (272)
T ss_pred eEEEECCcHHHHHHHHHHHHC-CCCEEEEEeCCH
Confidence 699999999999999999998 76 699998764
No 479
>PRK07831 short chain dehydrogenase; Provisional
Probab=63.73 E-value=7.7 Score=38.49 Aligned_cols=33 Identities=21% Similarity=0.279 Sum_probs=28.1
Q ss_pred ccEEEECC-C-CchHHHHHHHhcCCCCeEEEecCCC
Q psy1040 76 YDFVVVGG-G-VAGPVVAGRLVENPNWKVLLLEAGP 109 (614)
Q Consensus 76 yDvIVVGs-G-~aG~~~A~~Lae~~G~~VLlLEaG~ 109 (614)
--++|.|+ | ..|..+|.+|+++ |++|+++.+..
T Consensus 18 k~vlItG~sg~gIG~~ia~~l~~~-G~~V~~~~~~~ 52 (262)
T PRK07831 18 KVVLVTAAAGTGIGSATARRALEE-GARVVISDIHE 52 (262)
T ss_pred CEEEEECCCcccHHHHHHHHHHHc-CCEEEEEeCCH
Confidence 35899997 5 5999999999998 99999987654
No 480
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=63.62 E-value=7.1 Score=41.44 Aligned_cols=34 Identities=18% Similarity=0.222 Sum_probs=30.1
Q ss_pred cccEEEECCCCchHHHHHHHhcCCCC-eEEEecCCC
Q psy1040 75 EYDFVVVGGGVAGPVVAGRLVENPNW-KVLLLEAGP 109 (614)
Q Consensus 75 ~yDvIVVGsG~aG~~~A~~Lae~~G~-~VLlLEaG~ 109 (614)
+.-|+|||+|..|+.+|..|+.. |. ++.|++...
T Consensus 135 ~~~VlvvG~GG~Gs~ia~~La~~-Gvg~i~lvD~d~ 169 (376)
T PRK08762 135 EARVLLIGAGGLGSPAALYLAAA-GVGTLGIVDHDV 169 (376)
T ss_pred cCcEEEECCCHHHHHHHHHHHHc-CCCeEEEEeCCE
Confidence 46799999999999999999999 87 799998663
No 481
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=63.53 E-value=7.5 Score=37.10 Aligned_cols=34 Identities=18% Similarity=0.244 Sum_probs=29.4
Q ss_pred cccEEEECCCCchHHHHHHHhcCCCC-eEEEecCCC
Q psy1040 75 EYDFVVVGGGVAGPVVAGRLVENPNW-KVLLLEAGP 109 (614)
Q Consensus 75 ~yDvIVVGsG~aG~~~A~~Lae~~G~-~VLlLEaG~ 109 (614)
+.-|+|||+|.-|+.+|..|+.. |. ++.+++-..
T Consensus 21 ~s~VlIiG~gglG~evak~La~~-GVg~i~lvD~d~ 55 (197)
T cd01492 21 SARILLIGLKGLGAEIAKNLVLS-GIGSLTILDDRT 55 (197)
T ss_pred hCcEEEEcCCHHHHHHHHHHHHc-CCCEEEEEECCc
Confidence 45699999999999999999999 97 588888653
No 482
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=63.45 E-value=7.2 Score=39.57 Aligned_cols=32 Identities=13% Similarity=0.219 Sum_probs=28.3
Q ss_pred ccEEEECCCCchHHHHHHHhcCCCC-eEEEecCC
Q psy1040 76 YDFVVVGGGVAGPVVAGRLVENPNW-KVLLLEAG 108 (614)
Q Consensus 76 yDvIVVGsG~aG~~~A~~Lae~~G~-~VLlLEaG 108 (614)
..++|||+|.+|..+|+.|++. |. +|.|+.|-
T Consensus 126 k~vlvlGaGGaarai~~aL~~~-G~~~i~I~nRt 158 (282)
T TIGR01809 126 FRGLVIGAGGTSRAAVYALASL-GVTDITVINRN 158 (282)
T ss_pred ceEEEEcCcHHHHHHHHHHHHc-CCCeEEEEeCC
Confidence 4699999999999999999998 85 79998765
No 483
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=63.44 E-value=6.9 Score=39.60 Aligned_cols=33 Identities=15% Similarity=0.228 Sum_probs=29.3
Q ss_pred ccEEEECCCCchHHHHHHHhcCCC-CeEEEecCCC
Q psy1040 76 YDFVVVGGGVAGPVVAGRLVENPN-WKVLLLEAGP 109 (614)
Q Consensus 76 yDvIVVGsG~aG~~~A~~Lae~~G-~~VLlLEaG~ 109 (614)
--++|+|+|.+|..+|..|++. | .+|.|+.|-.
T Consensus 124 k~vlVlGaGg~a~ai~~aL~~~-g~~~V~v~~R~~ 157 (278)
T PRK00258 124 KRILILGAGGAARAVILPLLDL-GVAEITIVNRTV 157 (278)
T ss_pred CEEEEEcCcHHHHHHHHHHHHc-CCCEEEEEeCCH
Confidence 3689999999999999999998 8 7899998763
No 484
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=63.42 E-value=7.4 Score=41.52 Aligned_cols=34 Identities=29% Similarity=0.286 Sum_probs=30.2
Q ss_pred ccEEEECCCCchHHHHHHHhcCCCCeEEEecCCCC
Q psy1040 76 YDFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGPD 110 (614)
Q Consensus 76 yDvIVVGsG~aG~~~A~~Lae~~G~~VLlLEaG~~ 110 (614)
--++|||.|..|..+|.+|... |.+|+++|.-+.
T Consensus 196 k~VvViG~G~IG~~vA~~ak~~-Ga~ViV~d~dp~ 229 (406)
T TIGR00936 196 KTVVVAGYGWCGKGIAMRARGM-GARVIVTEVDPI 229 (406)
T ss_pred CEEEEECCCHHHHHHHHHHhhC-cCEEEEEeCChh
Confidence 3689999999999999999988 999999997643
No 485
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=63.18 E-value=6.9 Score=45.28 Aligned_cols=32 Identities=25% Similarity=0.368 Sum_probs=28.8
Q ss_pred cEEEECCCCchHHHHHHHh-cCCCCeEEEecCCC
Q psy1040 77 DFVVVGGGVAGPVVAGRLV-ENPNWKVLLLEAGP 109 (614)
Q Consensus 77 DvIVVGsG~aG~~~A~~La-e~~G~~VLlLEaG~ 109 (614)
-+.|||+|..|..+|..++ .. |+.|.|+|..+
T Consensus 311 ~v~ViGaG~mG~giA~~~a~~~-G~~V~l~d~~~ 343 (708)
T PRK11154 311 KVGVLGGGLMGGGIAYVTATKA-GLPVRIKDINP 343 (708)
T ss_pred EEEEECCchhhHHHHHHHHHHc-CCeEEEEeCCH
Confidence 3889999999999999999 77 99999999753
No 486
>PRK06057 short chain dehydrogenase; Provisional
Probab=63.07 E-value=7.9 Score=38.24 Aligned_cols=32 Identities=28% Similarity=0.370 Sum_probs=28.2
Q ss_pred cEEEECC-CCchHHHHHHHhcCCCCeEEEecCCC
Q psy1040 77 DFVVVGG-GVAGPVVAGRLVENPNWKVLLLEAGP 109 (614)
Q Consensus 77 DvIVVGs-G~aG~~~A~~Lae~~G~~VLlLEaG~ 109 (614)
-++|+|+ |.-|..+|.+|+++ |++|.++.+..
T Consensus 9 ~vlItGasggIG~~~a~~l~~~-G~~v~~~~r~~ 41 (255)
T PRK06057 9 VAVITGGGSGIGLATARRLAAE-GATVVVGDIDP 41 (255)
T ss_pred EEEEECCCchHHHHHHHHHHHc-CCEEEEEeCCH
Confidence 4899998 88999999999998 99999997753
No 487
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=62.70 E-value=7.9 Score=37.06 Aligned_cols=30 Identities=23% Similarity=0.431 Sum_probs=27.0
Q ss_pred EEEECCCCchHHHHHHHhcCCCCeEEEecCC
Q psy1040 78 FVVVGGGVAGPVVAGRLVENPNWKVLLLEAG 108 (614)
Q Consensus 78 vIVVGsG~aG~~~A~~Lae~~G~~VLlLEaG 108 (614)
+.|+|.|-.|..+|.+|+.+ |+.|.+--+.
T Consensus 4 ~~i~GtGniG~alA~~~a~a-g~eV~igs~r 33 (211)
T COG2085 4 IAIIGTGNIGSALALRLAKA-GHEVIIGSSR 33 (211)
T ss_pred EEEeccChHHHHHHHHHHhC-CCeEEEecCC
Confidence 67999999999999999999 9999997443
No 488
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=62.69 E-value=8 Score=42.03 Aligned_cols=33 Identities=24% Similarity=0.243 Sum_probs=29.9
Q ss_pred cEEEECCCCchHHHHHHHhcCCCCeEEEecCCCC
Q psy1040 77 DFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGPD 110 (614)
Q Consensus 77 DvIVVGsG~aG~~~A~~Lae~~G~~VLlLEaG~~ 110 (614)
-++|+|.|.+|..+|..|++. |.+|.+.|..+.
T Consensus 7 ~~~v~G~g~~G~~~a~~l~~~-g~~v~~~d~~~~ 39 (445)
T PRK04308 7 KILVAGLGGTGISMIAYLRKN-GAEVAAYDAELK 39 (445)
T ss_pred EEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCCC
Confidence 489999999999999999998 999999997654
No 489
>cd01490 Ube1_repeat2 Ubiquitin activating enzyme (E1), repeat 2. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the second repeat of Ub-E1.
Probab=62.44 E-value=7.2 Score=41.93 Aligned_cols=32 Identities=13% Similarity=0.165 Sum_probs=28.1
Q ss_pred EEEECCCCchHHHHHHHhcCCCC------eEEEecCCCC
Q psy1040 78 FVVVGGGVAGPVVAGRLVENPNW------KVLLLEAGPD 110 (614)
Q Consensus 78 vIVVGsG~aG~~~A~~Lae~~G~------~VLlLEaG~~ 110 (614)
|+|||+|..||-++..||.. |. ++.|++....
T Consensus 2 VlvVGaGGlGcE~lKnLal~-Gv~~g~~G~I~IvD~D~I 39 (435)
T cd01490 2 VFLVGAGAIGCELLKNFALM-GVGTGESGEITVTDMDNI 39 (435)
T ss_pred EEEECCCHHHHHHHHHHHHc-CCCcCCCCeEEEECCCCc
Confidence 78999999999999999998 87 8888886543
No 490
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=62.42 E-value=7.6 Score=38.10 Aligned_cols=34 Identities=26% Similarity=0.292 Sum_probs=29.5
Q ss_pred cccEEEECCCCchHHHHHHHhcCCCC-eEEEecCCC
Q psy1040 75 EYDFVVVGGGVAGPVVAGRLVENPNW-KVLLLEAGP 109 (614)
Q Consensus 75 ~yDvIVVGsG~aG~~~A~~Lae~~G~-~VLlLEaG~ 109 (614)
..-|+|||.|..|+.+|..|++. |. ++.|++...
T Consensus 11 ~~~VlVvG~GGvGs~va~~Lar~-GVg~i~LvD~D~ 45 (231)
T cd00755 11 NAHVAVVGLGGVGSWAAEALARS-GVGKLTLIDFDV 45 (231)
T ss_pred CCCEEEECCCHHHHHHHHHHHHc-CCCEEEEECCCE
Confidence 35699999999999999999998 87 788888553
No 491
>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3. UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=62.29 E-value=7.8 Score=39.39 Aligned_cols=30 Identities=17% Similarity=0.388 Sum_probs=26.6
Q ss_pred EEEECCCCchHHHHHHHhcCCCC-eEEEecCC
Q psy1040 78 FVVVGGGVAGPVVAGRLVENPNW-KVLLLEAG 108 (614)
Q Consensus 78 vIVVGsG~aG~~~A~~Lae~~G~-~VLlLEaG 108 (614)
|+|||+|.-|+-+|..|+.. |. ++.|++-.
T Consensus 2 VlVVGaGGlG~eilknLal~-Gvg~I~IvD~D 32 (291)
T cd01488 2 ILVIGAGGLGCELLKNLALS-GFRNIHVIDMD 32 (291)
T ss_pred EEEECCCHHHHHHHHHHHHc-CCCeEEEECCC
Confidence 78999999999999999998 86 68888754
No 492
>PRK06720 hypothetical protein; Provisional
Probab=61.96 E-value=10 Score=35.18 Aligned_cols=33 Identities=27% Similarity=0.356 Sum_probs=27.9
Q ss_pred ccEEEECCCC-chHHHHHHHhcCCCCeEEEecCCC
Q psy1040 76 YDFVVVGGGV-AGPVVAGRLVENPNWKVLLLEAGP 109 (614)
Q Consensus 76 yDvIVVGsG~-aG~~~A~~Lae~~G~~VLlLEaG~ 109 (614)
--++|.|++. .|..+|..|+++ |.+|.++.+..
T Consensus 17 k~~lVTGa~~GIG~aia~~l~~~-G~~V~l~~r~~ 50 (169)
T PRK06720 17 KVAIVTGGGIGIGRNTALLLAKQ-GAKVIVTDIDQ 50 (169)
T ss_pred CEEEEecCCChHHHHHHHHHHHC-CCEEEEEECCH
Confidence 3588999864 899999999998 99999998653
No 493
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=61.92 E-value=7.9 Score=39.58 Aligned_cols=34 Identities=21% Similarity=0.154 Sum_probs=30.4
Q ss_pred cccEEEECCCCchHHHHHHHhcCCCCeEEEecCCC
Q psy1040 75 EYDFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGP 109 (614)
Q Consensus 75 ~yDvIVVGsG~aG~~~A~~Lae~~G~~VLlLEaG~ 109 (614)
..-++|||.|.+|..+|..|... |.+|.+.++-+
T Consensus 152 g~kvlViG~G~iG~~~a~~L~~~-Ga~V~v~~r~~ 185 (296)
T PRK08306 152 GSNVLVLGFGRTGMTLARTLKAL-GANVTVGARKS 185 (296)
T ss_pred CCEEEEECCcHHHHHHHHHHHHC-CCEEEEEECCH
Confidence 35799999999999999999988 99999998763
No 494
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=61.84 E-value=7.1 Score=39.73 Aligned_cols=31 Identities=19% Similarity=0.427 Sum_probs=28.2
Q ss_pred EEEECCCCchHHHHHHHhcCCCCeEEEecCCC
Q psy1040 78 FVVVGGGVAGPVVAGRLVENPNWKVLLLEAGP 109 (614)
Q Consensus 78 vIVVGsG~aG~~~A~~Lae~~G~~VLlLEaG~ 109 (614)
+-|||.|..|..+|.+|++. |++|.+.++.+
T Consensus 2 IgvIG~G~mG~~iA~~l~~~-G~~V~~~dr~~ 32 (291)
T TIGR01505 2 VGFIGLGIMGSPMSINLAKA-GYQLHVTTIGP 32 (291)
T ss_pred EEEEEecHHHHHHHHHHHHC-CCeEEEEcCCH
Confidence 67999999999999999998 99999998763
No 495
>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional
Probab=61.48 E-value=9.4 Score=37.94 Aligned_cols=31 Identities=26% Similarity=0.257 Sum_probs=26.7
Q ss_pred cEEEECC---CCchHHHHHHHhcCCCCeEEEecCC
Q psy1040 77 DFVVVGG---GVAGPVVAGRLVENPNWKVLLLEAG 108 (614)
Q Consensus 77 DvIVVGs---G~aG~~~A~~Lae~~G~~VLlLEaG 108 (614)
=++|.|+ +..|..+|.+|++. |++|+++.+.
T Consensus 9 ~~lItGa~~s~GIG~aia~~la~~-G~~v~~~~r~ 42 (257)
T PRK08594 9 TYVVMGVANKRSIAWGIARSLHNA-GAKLVFTYAG 42 (257)
T ss_pred EEEEECCCCCCCHHHHHHHHHHHC-CCEEEEecCc
Confidence 3789997 48999999999998 9999998653
No 496
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=61.32 E-value=7.1 Score=45.59 Aligned_cols=33 Identities=21% Similarity=0.195 Sum_probs=29.5
Q ss_pred cEEEECCCCchHHHHHHHhcCCCCe-EEEecCCCC
Q psy1040 77 DFVVVGGGVAGPVVAGRLVENPNWK-VLLLEAGPD 110 (614)
Q Consensus 77 DvIVVGsG~aG~~~A~~Lae~~G~~-VLlLEaG~~ 110 (614)
.|||||+|..|+-+|..|.+. |.+ |.|+++.+.
T Consensus 572 ~VvVIGgG~~a~d~A~~~~r~-Ga~~Vtlv~r~~~ 605 (752)
T PRK12778 572 KVAVVGGGNTAMDSARTAKRL-GAERVTIVYRRSE 605 (752)
T ss_pred cEEEECCcHHHHHHHHHHHHc-CCCeEEEeeecCc
Confidence 699999999999999999998 886 999998743
No 497
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=61.14 E-value=8.9 Score=37.83 Aligned_cols=31 Identities=23% Similarity=0.216 Sum_probs=27.4
Q ss_pred cEEEECC-CCchHHHHHHHhcCCCCeEEEecCC
Q psy1040 77 DFVVVGG-GVAGPVVAGRLVENPNWKVLLLEAG 108 (614)
Q Consensus 77 DvIVVGs-G~aG~~~A~~Lae~~G~~VLlLEaG 108 (614)
-++|.|+ |..|..+|.+|+++ |++|.++.+.
T Consensus 12 ~vlItGa~g~iG~~ia~~l~~~-G~~V~~~~r~ 43 (255)
T PRK07523 12 RALVTGSSQGIGYALAEGLAQA-GAEVILNGRD 43 (255)
T ss_pred EEEEECCcchHHHHHHHHHHHc-CCEEEEEeCC
Confidence 3889986 88999999999998 9999998765
No 498
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=61.13 E-value=7.8 Score=41.37 Aligned_cols=35 Identities=17% Similarity=0.137 Sum_probs=30.2
Q ss_pred cccEEEECCCCchHHHHHHHhcCCCC-eEEEecCCCC
Q psy1040 75 EYDFVVVGGGVAGPVVAGRLVENPNW-KVLLLEAGPD 110 (614)
Q Consensus 75 ~yDvIVVGsG~aG~~~A~~Lae~~G~-~VLlLEaG~~ 110 (614)
+.-|+|||.|..|+.+|..|+.. |. ++.|++-...
T Consensus 42 ~~~VlviG~GGlGs~va~~La~~-Gvg~i~lvD~D~v 77 (392)
T PRK07878 42 NARVLVIGAGGLGSPTLLYLAAA-GVGTLGIVEFDVV 77 (392)
T ss_pred cCCEEEECCCHHHHHHHHHHHHc-CCCeEEEECCCEe
Confidence 46799999999999999999998 87 6888886543
No 499
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=60.99 E-value=8.7 Score=41.28 Aligned_cols=33 Identities=33% Similarity=0.318 Sum_probs=29.8
Q ss_pred cEEEECCCCchHHHHHHHhcCCCCeEEEecCCCC
Q psy1040 77 DFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGPD 110 (614)
Q Consensus 77 DvIVVGsG~aG~~~A~~Lae~~G~~VLlLEaG~~ 110 (614)
-++|||.|..|..+|.+|... |.+|++.|.-+.
T Consensus 214 ~VlViG~G~IG~~vA~~lr~~-Ga~ViV~d~dp~ 246 (425)
T PRK05476 214 VVVVAGYGDVGKGCAQRLRGL-GARVIVTEVDPI 246 (425)
T ss_pred EEEEECCCHHHHHHHHHHHhC-CCEEEEEcCCch
Confidence 599999999999999999988 999999997643
No 500
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=60.95 E-value=7.9 Score=44.69 Aligned_cols=32 Identities=22% Similarity=0.399 Sum_probs=28.5
Q ss_pred cEEEECCCCchHHHHHHHh-cCCCCeEEEecCCC
Q psy1040 77 DFVVVGGGVAGPVVAGRLV-ENPNWKVLLLEAGP 109 (614)
Q Consensus 77 DvIVVGsG~aG~~~A~~La-e~~G~~VLlLEaG~ 109 (614)
-|.|||+|..|..+|..++ .+ |+.|.|+|.-+
T Consensus 306 ~v~ViGaG~mG~~iA~~~a~~~-G~~V~l~d~~~ 338 (699)
T TIGR02440 306 KVGILGGGLMGGGIASVTATKA-GIPVRIKDINP 338 (699)
T ss_pred EEEEECCcHHHHHHHHHHHHHc-CCeEEEEeCCH
Confidence 3889999999999999998 57 99999999764
Done!