RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy1040
(614 letters)
>gnl|CDD|225186 COG2303, BetA, Choline dehydrogenase and related flavoproteins
[Amino acid transport and metabolism].
Length = 542
Score = 333 bits (856), Expect = e-107
Identities = 186/549 (33%), Positives = 262/549 (47%), Gaps = 30/549 (5%)
Query: 74 EEYDFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGP-DEPTVTSVP-GFAASAVGTHLDW 131
EYD+V+VG G AG V+A RL + VL+LEAG D + +P +A G DW
Sbjct: 6 MEYDYVIVGSGSAGSVLAARLSD-AGLSVLVLEAGGPDRRPLIQMPAAYAFLMNGPRYDW 64
Query: 132 KYKTERNKYACLSTGGICEWPRGKMLAGTGAMTGMMYTRSHPSIYDEW-QRQGNPGWGFS 190
++TE + G WPRGK+L G+ ++ GM+Y R HP +D W Q G PGW +
Sbjct: 65 GFRTEPEPHL---RGRELAWPRGKVLGGSSSINGMVYVRGHPEDFDAWAQESGAPGWPYD 121
Query: 191 DVLRYFIKSEHNLN-RDQVDPEYHGYDGPLKVQRFSSYPPIGEDIIKAGKELGYA-SGDF 248
DVL YF ++E L Q +HG GPL V S PI I+AG++LG+ + D
Sbjct: 122 DVLPYFKRAEDLLGVGGQDLRTWHGGGGPLPVSPPRSPNPIARAFIEAGEQLGFPTTPDP 181
Query: 249 NGANQIGVNFAQVMVDNGVRSSTPRMFLRDKYKQDNLKVQLNAHVMKLNIDPKTKRALSV 308
NGA+Q G V + NG R S R +L+ K+ NL + A V ++ ++ + V
Sbjct: 182 NGADQEGFGPYCVTICNGRRWSAARAYLKPALKRPNLTLLTGARVRRILLEGDRAVGVEV 241
Query: 309 QFKDTNTNEIKTVKAKKEIILTAGAIGSPQLLMLSGVGPKSHLDELGIETISDLR-VGYN 367
+ D T I+T A +E++L AGAI SP+LL+LSG+GP HL E GI+ + L VG N
Sbjct: 242 EIGDGGT--IETAVAAREVVLAAGAINSPKLLLLSGIGPADHLLEHGIDVVGRLPGVGQN 299
Query: 368 LVHH----VGANLKFSILDNGVSDNNGEIDEKGTYLEESNEGLSSMKGNMDEMLNDGRPG 423
L H V D+ +S + YL + G + + G G
Sbjct: 300 LQDHLEIYVAFEATEPTNDSVLSLFSKLGIGADRYLLTRD-GPGATNHFEGGFVRSGPAG 358
Query: 424 RSI-LSNTFNALFSNNNKEEDKMPCGRRSIYARPTNLLPISRGRLVLRSADPFEYPKIHS 482
F L + RP SRG + LRS DP P I
Sbjct: 359 EYPDGQYHFAPLPLAIRAAGAEHGFTLHVGPMRP-----KSRGSVTLRSPDPDNRPVIDP 413
Query: 483 NYLVMKQDIDVIIEGIRIIQKLTRTKALQKWDFQIDSTKMPECKHFEWDSNEYWECYIKT 542
NYL + D + GIR+ +++ AL + P ++E I+
Sbjct: 414 NYLSAEGDRAIFRAGIRLTREIIGQPALDAR---RKAELAPGP---RVTTDEDISAAIRF 467
Query: 543 YTLPENHPGGTCKMGPADDYSSVVDAQLRIHGVPNLRVMDASIFPTNINSNPIATIIMIA 602
HP GTC+MG +D + V D LR+HG+ NLRV+DAS+ PT+ NP TII +A
Sbjct: 468 LARTAYHPMGTCRMG-SDPAAVVDDPYLRVHGLENLRVVDASVMPTSTGVNPNLTIIALA 526
Query: 603 EKGADMVKE 611
E+ AD +
Sbjct: 527 ERAADHILG 535
>gnl|CDD|235000 PRK02106, PRK02106, choline dehydrogenase; Validated.
Length = 560
Score = 243 bits (623), Expect = 8e-73
Identities = 120/316 (37%), Positives = 167/316 (52%), Gaps = 36/316 (11%)
Query: 73 QEEYDFVVVGGGVAGPVVAGRLVENPNWKVLLLEAG-PDEPT--VTSVP-GFAASAVGTH 128
EYD++++G G AG V+A RL E+P+ VLLLEAG PD +P A G
Sbjct: 3 TMEYDYIIIGAGSAGCVLANRLSEDPDVSVLLLEAGGPDYRWDFFIQMPAALAFPLQGKR 62
Query: 129 LDWKYKTE-------RNKYACLSTGGICEWPRGKMLAGTGAMTGMMYTRSHPSIYDEW-Q 180
+W Y+TE R PRGK+L G+ ++ GM+Y R + YD W +
Sbjct: 63 YNWAYETEPEPHMNNRRME----------CPRGKVLGGSSSINGMVYIRGNAMDYDNWAE 112
Query: 181 RQGNPGWGFSDVLRYFIKSEHNLNRDQVDPEYHGYDGPLKVQRFSSYP---PIGEDIIKA 237
G GW ++D L YF K+E RD + +Y G DGPL V R P P+ + ++A
Sbjct: 113 LPGLEGWSYADCLPYFKKAET---RDGGEDDYRGGDGPLSVTR--GKPGTNPLFQAFVEA 167
Query: 238 GKELGY-ASGDFNGANQIGVNFAQVMVDNGVRSSTPRMFLRDKYKQDNLKVQLNAHVMKL 296
G + GY + D NG Q G V NG R S R +L K+ NL + +A ++
Sbjct: 168 GVQAGYPRTDDLNGYQQEGFGPMDRTVTNGRRWSAARAYLDPALKRPNLTIVTHALTDRI 227
Query: 297 NIDPKTKRALSVQFKDTNTNEIKTVKAKKEIILTAGAIGSPQLLMLSGVGPKSHLDELGI 356
+ K RA+ V+++ +T +A++E+IL+AGAI SPQLL LSG+GP HL ELGI
Sbjct: 228 LFEGK--RAVGVEYE--RGGGRETARARREVILSAGAINSPQLLQLSGIGPAEHLKELGI 283
Query: 357 ETISDLR-VGYNLVHH 371
+ DL VG NL H
Sbjct: 284 PVVHDLPGVGENLQDH 299
Score = 123 bits (312), Expect = 7e-30
Identities = 57/165 (34%), Positives = 78/165 (47%), Gaps = 34/165 (20%)
Query: 459 LLPISRGRLVLRSADPFEYPKIHSNYLVMKQDIDVIIEGIRIIQKLTRTKALQKW----- 513
+ SRG + L+SADP +P I NY+ +QD + IR+ +++ AL +
Sbjct: 389 MRSPSRGSVKLKSADPRAHPSILFNYMSTEQDWREFRDAIRLTREIMAQPALDPYRGREI 448
Query: 514 --------DFQIDSTKMPECKHFEWDSNEYWECYIKTYTLPENHPGGTCKMGPADDYSSV 565
D +ID + Y HP TCKMG D +V
Sbjct: 449 SPGADVQTDEEID----------AFVREHAETAY---------HPSCTCKMGT--DPMAV 487
Query: 566 VDAQLRIHGVPNLRVMDASIFPTNINSNPIATIIMIAEKGADMVK 610
VD + R+HGV LRV+DASI PT N N A IMIAEK AD+++
Sbjct: 488 VDPEGRVHGVEGLRVVDASIMPTITNGNLNAPTIMIAEKAADLIR 532
>gnl|CDD|233581 TIGR01810, betA, choline dehydrogenase. Choline dehydrogenase
catalyzes the conversion of exogenously supplied choline
into the intermediate glycine betaine aldehyde, as part
of a two-step oxidative reaction leading to the
formation of osmoprotectant betaine. This enzymatic
system can be found in both gram-positive and
gram-negative bacteria. As in Escherichia coli ,
Staphylococcus xylosus , and Sinorhizobium meliloti,
this enzyme is found associated in a transciptionally
co-induced gene cluster with betaine aldehyde
dehydrogenase, the second catalytic enzyme in this
reaction. Other gram-positive organisms have been shown
to employ a different enzymatic system, utlizing a
soluable choline oxidase or type III alcohol
dehydrogenase instead of choline dehydrogenase. This
enzyme is a member of the GMC oxidoreductase family
(pfam00732 and pfam05199), sharing a common
evoluntionary origin and enzymatic reaction with alcohol
dehydrogenase. Outgrouping from this model, Caulobacter
crescentus shares sequence homology with choline
dehydrogenase, yet other genes participating in this
enzymatic reaction have not currently been identified
[Cellular processes, Adaptations to atypical
conditions].
Length = 532
Score = 207 bits (529), Expect = 9e-60
Identities = 116/303 (38%), Positives = 163/303 (53%), Gaps = 17/303 (5%)
Query: 77 DFVVVGGGVAGPVVAGRLVENPNWKVLLLEAG----PDEPTVTSVPGFAASAVGTHLDWK 132
D++++GGG AG V+AGRL E+ + VL+LEAG P + + A A +W
Sbjct: 1 DYIIIGGGSAGSVLAGRLSEDVSNSVLVLEAGGSDYPWDLLIQMPAALAYPAGNKRYNWI 60
Query: 133 YKTERNKYACLSTGGICEWPRGKMLAGTGAMTGMMYTRSHPSIYDEW-QRQGNPGWGFSD 191
Y+TE + RGK+L G+ ++ GM+Y R +P Y++W + +G W ++D
Sbjct: 61 YETEPEPHM---NNRRVGHARGKVLGGSSSINGMIYQRGNPMDYEKWAKPEGMESWDYAD 117
Query: 192 VLRYFIKSEHNLNRDQVDPEYHGYDGPLKVQRFSSYPPIGEDIIKAGKELGY-ASGDFNG 250
L Y+ + E + Y G+DGP+KV+R + P+ + I+AG E GY + D NG
Sbjct: 118 CLPYYKRLET---TFGGEKPYRGHDGPIKVRRGPADNPLFQAFIEAGVEAGYNKTPDVNG 174
Query: 251 ANQIGVNFAQVMVDNGVRSSTPRMFLRDKYKQDNLKVQLNAHVMKLNIDPKTKRALSVQF 310
Q G V NG R S R +L K+ NL+VQ A V K+N + RA V+F
Sbjct: 175 FRQEGFGPMDSTVHNGRRVSAARAYLHPAMKRPNLEVQTRAFVTKINFE--GNRATGVEF 232
Query: 311 KDTNTNEIKTVKAKKEIILTAGAIGSPQLLMLSGVGPKSHLDELGIETISDLR-VGYNLV 369
K E +A KE+IL+AGAI SPQLL LSG+G HL ELGIE L VG NL
Sbjct: 233 KKGGRKEH--TEANKEVILSAGAINSPQLLQLSGIGDAEHLRELGIEPRIHLPGVGENLQ 290
Query: 370 HHV 372
H+
Sbjct: 291 DHL 293
Score = 115 bits (290), Expect = 3e-27
Identities = 57/148 (38%), Positives = 89/148 (60%), Gaps = 6/148 (4%)
Query: 463 SRGRLVLRSADPFEYPKIHSNYLVMKQDIDVIIEGIRIIQKLTRTKALQKWDFQIDSTKM 522
SRG + ++S DPFE P+I NY+ ++D E IR+ +++ + KAL + + +
Sbjct: 386 SRGHVKIKSKDPFEKPEIVFNYMSHEEDWREFREAIRVTREILKQKALDPYRGG-EISPG 444
Query: 523 PECKHFEWDSNEYWECYIKTYTLPENHPGGTCKMGPADDYSSVVDAQLRIHGVPNLRVMD 582
PE + ++E + +++ + HP GTCKMGPA D SVVD + R+HG+ LRV+D
Sbjct: 445 PEVQ-----TDEEIDEFVRRHGETALHPCGTCKMGPASDEMSVVDPETRVHGMEGLRVVD 499
Query: 583 ASIFPTNINSNPIATIIMIAEKGADMVK 610
ASI P N N A +IM+ EK AD+++
Sbjct: 500 ASIMPRITNGNLNAPVIMMGEKAADIIR 527
>gnl|CDD|234421 TIGR03970, Rv0697, dehydrogenase, Rv0697 family. This model
describes a set of dehydrogenases belonging to the
glucose-methanol-choline oxidoreductase (GMC
oxidoreductase) family. Members of the present family
are restricted to Actinobacterial genome contexts
containing also members of families TIGR03962 and
TIGR03969 (the mycofactocin system), and are proposed to
be uniform in function.
Length = 487
Score = 164 bits (418), Expect = 2e-44
Identities = 98/305 (32%), Positives = 149/305 (48%), Gaps = 25/305 (8%)
Query: 77 DFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGPDEPTVTSVPGFAASAV------GTHLD 130
D +VVGGG AG VVA RL E+P+ V +LEAGP + +P + + +
Sbjct: 2 DVLVVGGGSAGCVVAARLSEDPSCTVTVLEAGPGYRDPSRLPAQLTDGLRLPIGPASPVV 61
Query: 131 WKYKTERNKYACLSTGGICEWPRGKMLAGTGAMTGMMYTRSHPSIYDEWQRQGNPGWGFS 190
W+Y E ++ + RG++L G+GA+ G + R+ P+ +D W PGW +
Sbjct: 62 WRYGVELTDGPRRASAIV----RGRVLGGSGAVNGGYFCRALPADFDAWPI---PGWSWD 114
Query: 191 DVLRYFIKSEHNLNRDQVDPEYHGYDGPLKVQRFSSYPPIGEDIIKAGKELGYAS-GDFN 249
DVL +F E +L+ D HG GP+ V+R + I + A G+ D N
Sbjct: 115 DVLPHFRAIETDLD---FDGPLHGTAGPIPVRRTAELDGISAAFVAAALGAGFGWIADLN 171
Query: 250 GAN---QIGVNFAQVMVDNGVRSSTPRMFLRDKYKQDNLKVQLNAHVMKLNIDPKTKRAL 306
G+ GV + VD G R ST +L K+ NL V+ + V+++ RA+
Sbjct: 172 GSGPDAPTGVGAVPLNVDGGRRVSTAVAYLLPALKRPNLTVEADTRVVRILF--SGTRAV 229
Query: 307 SVQFKDTNTNEIKTVKAKKEIILTAGAIGSPQLLMLSGVGPKSHLDELGIETISDLRVGY 366
V+ T++A + ++L AGA+ S LL+LSG+GP L GI + DL VG
Sbjct: 230 GVEVLGDGGPR--TLRADR-VVLCAGAVESAHLLLLSGIGPAEQLRAAGIAVVLDLPVGS 286
Query: 367 NLVHH 371
+ V H
Sbjct: 287 DFVDH 291
Score = 91.0 bits (226), Expect = 2e-19
Identities = 45/149 (30%), Positives = 66/149 (44%), Gaps = 14/149 (9%)
Query: 461 PISRGRLVLRSADPFEYPKIHSNYLVMKQDIDVIIEGIRIIQKLTRTKALQKWDFQIDST 520
P SRGR+ L SADP + P+I Y D + G + +L +
Sbjct: 352 PHSRGRIRLASADPADPPRIEHRYDSSAADRAALRAGAALAHELLGS------------- 398
Query: 521 KMPECKHFEWDSNEYWECYIKTYTLPENHPGGTCKMGPADDYSSVVDAQLRIHGVPNLRV 580
E E ++ H G+C+MG DD +VVDA+ R+ GV L V
Sbjct: 399 -PELGPLLEPAVREGEASWVLARLATSQHLCGSCRMGGRDDPGAVVDARCRVRGVEGLWV 457
Query: 581 MDASIFPTNINSNPIATIIMIAEKGADMV 609
+D SI P + P AT +M+AE+ A+ +
Sbjct: 458 VDGSILPVIPSRGPHATAVMVAERAAEFL 486
>gnl|CDD|216089 pfam00732, GMC_oxred_N, GMC oxidoreductase. This family of
proteins bind FAD as a cofactor.
Length = 218
Score = 155 bits (394), Expect = 8e-44
Identities = 65/238 (27%), Positives = 100/238 (42%), Gaps = 38/238 (15%)
Query: 141 ACLSTGG-ICEWPRGKMLAGTGAMTGMMYTRSHPSIYDEW-QRQGNPGWGFSDVLRYFIK 198
+ S G P G + G ++ R+ ++ DEW G GWG+ D L Y K
Sbjct: 10 SAGSVNGRRMILPAGSTVGGGSSVNWSACIRTPAAVLDEWASEFGLEGWGYDDYLPYMDK 69
Query: 199 SEHNLNRDQVDPEYHGYDGPLKVQRFSSYP-PIGEDIIKAGKELGYASG----DFNGANQ 253
E GPL V P+ + ++KA +ELGY + NG +
Sbjct: 70 VE----------------GPLGVTTKGIEESPLNQALLKAAEELGYPVEAVPRNSNGCHY 113
Query: 254 IGVNFAQVMVDNGVRSSTPRMFLRDKYKQDNLKVQLNAHVMKLNIDPKTKRALSVQFKDT 313
G G + ST R +LR ++ NL++ A K+ I + RA+ V+ +D
Sbjct: 114 CGFCGLGC--PTGAKQSTARTWLRPALER-NLRILTGAKAEKIIILGRGGRAVGVEARDG 170
Query: 314 NTNEIKTVKAKKEIILTAGAIGSPQLLMLSGVGPKSHLDELGIETISDLRVGYNLVHH 371
+ + A KE+++ AGA+ +P LL+ SG+G H VG NL H
Sbjct: 171 GGGIKRLITAAKEVVVAAGALNTPPLLLRSGLGKNPH------------PVGKNLQLH 216
>gnl|CDD|218493 pfam05199, GMC_oxred_C, GMC oxidoreductase. This domain found
associated with pfam00732.
Length = 139
Score = 150 bits (380), Expect = 7e-43
Identities = 50/145 (34%), Positives = 75/145 (51%), Gaps = 6/145 (4%)
Query: 461 PISRGRLVLRSADPFEYPKIHSNYLVMKQDIDVIIEGIRIIQKLTRTKALQKWDFQIDST 520
P SRGR+ L S+DP P I NYL D+ + +R+ +++ ++ +
Sbjct: 1 PRSRGRVTLSSSDPLGLPVIDPNYLSDPADLAALRAALRLARRILAAALVELTPGPV--- 57
Query: 521 KMPECKHFEWDSNEYWECYIKTYTLPENHPGGTCKMGPADDYSSVVDAQLRIHGVPNLRV 580
S++ YI+ + HP GTC+MG D VVD LR+HGV NLRV
Sbjct: 58 --EVVPGAAEASDDEILEYIRAAAVTSWHPMGTCRMGADPD-DGVVDPDLRVHGVDNLRV 114
Query: 581 MDASIFPTNINSNPIATIIMIAEKG 605
+DAS+FP++ + NP TI +AE+
Sbjct: 115 VDASVFPSSPSGNPTLTIYALAERA 139
>gnl|CDD|215420 PLN02785, PLN02785, Protein HOTHEAD.
Length = 587
Score = 119 bits (301), Expect = 2e-28
Identities = 156/625 (24%), Positives = 232/625 (37%), Gaps = 183/625 (29%)
Query: 62 ASSNLVRNRPLQEEYDFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGPDEPTVTSVPGFA 121
+SS+ + YD++VVGGG AG +A L +N + VLLLE G VP F
Sbjct: 42 SSSSSSSSSGGDSAYDYIVVGGGTAGCPLAATLSQN--FSVLLLERG-------GVP-FG 91
Query: 122 ASAVGTHLDWKYKTERNKYACL-------------STGGICEWPRGKMLAGTGAMTGMMY 168
+ V + L N + L ST G+ R ++L G + Y
Sbjct: 92 NANV-SFL-------ENFHIGLADTSPTSASQAFISTDGVIN-ARARVLGGGTCINAGFY 142
Query: 169 TRSHPSIYDEWQRQGNPGWGFSDVLRYFIKSEHNLNRDQVDPEYHGYDGPLKVQRFSSYP 228
+R+ FI+ G+D L + SYP
Sbjct: 143 SRASTR---------------------FIQKA-------------GWDAKLVNE---SYP 165
Query: 229 PIGEDIIKAGK-------------ELGYASGDFNGANQ---IGVNFAQVMVDNGVRSSTP 272
+ I+ K E+G + FNG G + D R T
Sbjct: 166 WVERQIVHWPKVAPWQAALRDSLLEVGVSP--FNGFTYDHVYGTKVGGTIFDEFGRRHTA 223
Query: 273 RMFLRDKYKQDNLKVQLNAHVMKL--NIDPKTKRALSVQFKDTNTNEIKTVKAKK---EI 327
L L+V L+A V K+ + K RA V FKD N N+ + + EI
Sbjct: 224 AELLAAGNPN-KLRVLLHATVQKIVFDTSGKRPRATGVIFKDENGNQHQAFLSNNKGSEI 282
Query: 328 ILTAGAIGSPQLLMLSGVGPKSHLDELGIETISDLRVGYNLVHHVGANLKFSILDNGVSD 387
IL+AGAIGSPQ+L+LSG+GPK L + I + HVG G++D
Sbjct: 283 ILSAGAIGSPQMLLLSGIGPKKELKKHKIPVVLHNE-------HVG---------KGMAD 326
Query: 388 NNGE-------------------IDEKGTYLEESNEGLSSMKGNMDEMLNDGRPGRSILS 428
N I + G Y+E S+ G G+ SI
Sbjct: 327 NPMNSIFVPSKAPVEQSLIQTVGITKMGVYIEASS-GF-------------GQSPDSI-- 370
Query: 429 NTFNALFSNNNKEEDKMPCGRRSIYA------RPTNLL---------------PISRGRL 467
+ + + S + +P +R+ A R NL PIS G L
Sbjct: 371 HCHHGIMSAEIGQLSTIPPKQRTPEAIQAYIHRKKNLPHEAFNGGFILEKIAGPISTGHL 430
Query: 468 VLRSADPFEYPKIHSNYLVMKQDIDVIIEGIRIIQKLTRTKALQKWDFQIDSTKMPECKH 527
L + + + P + NY QD+ + GIR I+K+ +T + Q D M + +
Sbjct: 431 SLINTNVDDNPSVTFNYFKHPQDLQRCVYGIRTIEKIVKTNHFTNFT-QCDKQTMEKVLN 489
Query: 528 FEWDSN-----------EYWECYIKTYTLPENHPGGTCKMGPADDYSSVVDAQLRIHGVP 576
+N + E + K + H G C +G VVD ++ GV
Sbjct: 490 MSVKANINLIPKHTNDTKSLEQFCKDTVITIWHYHGGCHVG------KVVDQNYKVLGVS 543
Query: 577 NLRVMDASIFPTNINSNPIATIIMI 601
LRV+D S F + +NP AT++M+
Sbjct: 544 RLRVIDGSTFDESPGTNPQATVMMM 568
>gnl|CDD|181346 PRK08275, PRK08275, putative oxidoreductase; Provisional.
Length = 554
Score = 40.0 bits (94), Expect = 0.004
Identities = 18/33 (54%), Positives = 23/33 (69%), Gaps = 1/33 (3%)
Query: 75 EYDFVVVGGGVAGPVVAGRLVE-NPNWKVLLLE 106
E D +V+GGG AGP+ A + E NP +VLLLE
Sbjct: 9 ETDILVIGGGTAGPMAAIKAKERNPALRVLLLE 41
>gnl|CDD|131515 TIGR02462, pyranose_ox, pyranose oxidase. Pyranose oxidase (also
called glucose 2-oxidase) converts D-glucose and
molecular oxygen to 2-dehydro-D-glucose and hydrogen
peroxide. Peroxide production is believed to be
important to the wood rot fungi in which this enzyme is
found for lignin degradation.
Length = 544
Score = 39.5 bits (92), Expect = 0.005
Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Query: 549 HPGGTCKMGPADDYSSVVDAQLRIHGVPNLRVMDASIFPTNINSNPIATIIMIAEKGADM 608
H GT ++G D+ ++V + ++H NL V PT +NP T + A K A+
Sbjct: 480 HLAGTTRIG-FDEQTTVANTDSKVHNFKNLYVGGNGNIPTAFGANPTLTSMCYAIKSAEY 538
Query: 609 VK 610
+
Sbjct: 539 II 540
>gnl|CDD|235787 PRK06370, PRK06370, mercuric reductase; Validated.
Length = 463
Score = 39.0 bits (92), Expect = 0.007
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 73 QEEYDFVVVGGGVAGPVVAGRLVENPNWKVLLLE 106
+ YD +V+G G AGP +A R KV L+E
Sbjct: 3 AQRYDAIVIGAGQAGPPLAARAAG-LGMKVALIE 35
>gnl|CDD|218770 pfam05834, Lycopene_cycl, Lycopene cyclase protein. This family
consists of lycopene beta and epsilon cyclase proteins.
Carotenoids with cyclic end groups are essential
components of the photosynthetic membranes in all
plants, algae, and cyanobacteria. These lipid-soluble
compounds protect against photo-oxidation, harvest light
for photosynthesis, and dissipate excess light energy
absorbed by the antenna pigments. The cyclisation of
lycopene (psi, psi-carotene) is a key branch point in
the pathway of carotenoid biosynthesis. Two types of
cyclic end groups are found in higher plant carotenoids:
the beta and epsilon rings. Carotenoids with two beta
rings are ubiquitous, and those with one beta and one
epsilon ring are common; however, carotenoids with two
epsilon rings are rare.
Length = 374
Score = 38.8 bits (91), Expect = 0.007
Identities = 18/37 (48%), Positives = 26/37 (70%), Gaps = 1/37 (2%)
Query: 77 DFVVVGGGVAGPVVAGRLVEN-PNWKVLLLEAGPDEP 112
D V+VG G+AG ++A RL + P +VLL++AGP P
Sbjct: 1 DLVIVGAGLAGLLLALRLRQARPGLRVLLIDAGPGPP 37
>gnl|CDD|224169 COG1249, Lpd, Pyruvate/2-oxoglutarate dehydrogenase complex,
dihydrolipoamide dehydrogenase (E3) component, and
related enzymes [Energy production and conversion].
Length = 454
Score = 38.0 bits (89), Expect = 0.013
Identities = 17/36 (47%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 74 EEYDFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGP 109
+EYD VV+G G AG V A R + KV L+E G
Sbjct: 3 KEYDVVVIGAGPAGYVAAIRAAQLG-LKVALVEKGE 37
>gnl|CDD|240384 PTZ00367, PTZ00367, squalene epoxidase; Provisional.
Length = 567
Score = 37.9 bits (88), Expect = 0.014
Identities = 16/32 (50%), Positives = 23/32 (71%), Gaps = 1/32 (3%)
Query: 75 EYDFVVVGGGVAGPVVAGRLVENPNWKVLLLE 106
+YD ++VGG +AGPV+A L + KVL+LE
Sbjct: 33 DYDVIIVGGSIAGPVLAKALSKQ-GRKVLMLE 63
>gnl|CDD|223717 COG0644, FixC, Dehydrogenases (flavoproteins) [Energy production
and conversion].
Length = 396
Score = 37.8 bits (88), Expect = 0.016
Identities = 17/36 (47%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 74 EEYDFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGP 109
EYD V+VG G AG A RL + VL+LE G
Sbjct: 2 MEYDVVIVGAGPAGSSAARRLAKA-GLDVLVLEKGS 36
>gnl|CDD|233671 TIGR01988, Ubi-OHases, Ubiquinone biosynthesis hydroxylase,
UbiH/UbiF/VisC/COQ6 family. This model represents a
family of FAD-dependent hydroxylases (monooxygenases)
which are all believed to act in the aerobic ubiquinone
biosynthesis pathway. A separate set of hydroxylases, as
yet undiscovered, are believed to be active under
anaerobic conditions. In E. coli three enzyme activities
have been described, UbiB (which acts first at position
6, see TIGR01982), UbiH (which acts at position 4,) and
UbiF (which acts at position 5,). UbiH and UbiF are
similar to one another and form the basis of this
subfamily. Interestingly, E. coli contains another
hydroxylase gene, called visC, that is highly similar to
UbiF, adjacent to UbiH and, when mutated, results in a
phenotype similar to that of UbiH (which has also been
named visB). Several other species appear to have three
homologs in this family, although they assort themselves
differently on phylogenetic trees (e.g. Xylella and
Mesorhizobium) making it difficult to ascribe a specific
activity to each one. Eukaryotes appear to have only a
single homolog in this subfamily (COQ6,) which
complements UbiH, but also possess a non-orthologous
gene, COQ7 which complements UbiF [Biosynthesis of
cofactors, prosthetic groups, and carriers, Menaquinone
and ubiquinone].
Length = 387
Score = 37.6 bits (88), Expect = 0.018
Identities = 17/49 (34%), Positives = 22/49 (44%)
Query: 77 DFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGPDEPTVTSVPGFAASAV 125
D V+VGGG G +A L + KV L+EA P SA+
Sbjct: 1 DIVIVGGGPVGLALALALARSGGLKVALIEATPLPAPADPGFDNRVSAL 49
>gnl|CDD|216400 pfam01266, DAO, FAD dependent oxidoreductase. This family includes
various FAD dependent oxidoreductases:
Glycerol-3-phosphate dehydrogenase EC:1.1.99.5,
Sarcosine oxidase beta subunit EC:1.5.3.1, D-alanine
oxidase EC:1.4.99.1, D-aspartate oxidase EC:1.4.3.1.
Length = 234
Score = 36.5 bits (85), Expect = 0.022
Identities = 16/51 (31%), Positives = 18/51 (35%), Gaps = 9/51 (17%)
Query: 77 DFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGPDEPTVTSVPGFAASAVGT 127
D VV+GGG+ G A L V LLE G AS
Sbjct: 1 DVVVIGGGIVGLSTAYELAR-RGLSVTLLERGD--------LASGASGRNA 42
>gnl|CDD|223652 COG0579, COG0579, Predicted dehydrogenase [General function
prediction only].
Length = 429
Score = 36.9 bits (86), Expect = 0.027
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 73 QEEYDFVVVGGGVAGPVVAGRLVE-NPNWKVLLLE 106
+YD V++GGG+ G A L E P+ V LLE
Sbjct: 1 MMDYDVVIIGGGIMGAATAYELSEYEPDLSVALLE 35
>gnl|CDD|205628 pfam13450, NAD_binding_8, NAD(P)-binding Rossmann-like domain.
Length = 66
Score = 32.8 bits (76), Expect = 0.039
Identities = 11/31 (35%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Query: 80 VVGGGVAGPVVAGRLVENPNWKVLLLEAGPD 110
+VG G++G V A L + VL+LE
Sbjct: 1 IVGAGLSGLVAAYLLAKR-GKDVLVLEKRDR 30
>gnl|CDD|130850 TIGR01790, carotene-cycl, lycopene cyclase family protein. This
family includes lycopene beta and epsilion cyclases
(which form beta and delta carotene, respectively) from
bacteria and plants as well as the plant
capsanthin/capsorubin and neoxanthin cyclases which
appear to have evolved from the plant lycopene cyclases.
The plant lycopene epsilon cyclases also transform
neurosporene to alpha zeacarotene.
Length = 388
Score = 36.3 bits (84), Expect = 0.046
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 77 DFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGPDEP 112
D V+GGG AG +A L P +V L+E P P
Sbjct: 1 DLAVIGGGPAGLAIALELAR-PGLRVQLIEPHPPIP 35
>gnl|CDD|223737 COG0665, DadA, Glycine/D-amino acid oxidases (deaminating) [Amino
acid transport and metabolism].
Length = 387
Score = 36.0 bits (83), Expect = 0.046
Identities = 16/53 (30%), Positives = 23/53 (43%), Gaps = 9/53 (16%)
Query: 72 LQEEYDFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGPDEPTVTSVPGFAASA 124
+ + D V++GGG+ G A L E V +LEAG G A+
Sbjct: 1 MSMKMDVVIIGGGIVGLSAAYYLAER-GADVTVLEAGE--------AGGGAAG 44
>gnl|CDD|181199 PRK08020, ubiF, 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol
hydroxylase; Reviewed.
Length = 391
Score = 35.7 bits (83), Expect = 0.059
Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Query: 73 QEEYDFVVVGGGVAGPVVAGRLVENPNWKVLLLE-AGPDEPTVTSVPGFAASAVG 126
+ D +VGGG+ G +A L ++ + V +LE A P S P SA+
Sbjct: 3 NQPTDIAIVGGGMVGAALALGLAQH-GFSVAVLEHAAPAPFDADSQPDVRISAIS 56
>gnl|CDD|130849 TIGR01789, lycopene_cycl, lycopene cyclase. This model represents
a family of bacterial lycopene cyclases catalyzing the
transformation of lycopene to carotene. These enzymes
are found in a limited spectrum of alpha and gamma
proteobacteria as well as Flavobacterium.
Length = 370
Score = 35.2 bits (81), Expect = 0.097
Identities = 14/34 (41%), Positives = 25/34 (73%), Gaps = 1/34 (2%)
Query: 77 DFVVVGGGVAGPVVAGRLVE-NPNWKVLLLEAGP 109
D ++VGGG+AG ++A RL P++++ ++EAG
Sbjct: 1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGR 34
>gnl|CDD|234978 PRK01747, mnmC, bifunctional tRNA
(mnm(5)s(2)U34)-methyltransferase/FAD-dependent
cmnm(5)s(2)U34 oxidoreductase; Reviewed.
Length = 662
Score = 35.2 bits (82), Expect = 0.10
Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 77 DFVVVGGGVAGPVVAGRLVENPNWKVLLLEA 107
D ++GGG+AG +A L W+V L EA
Sbjct: 262 DAAIIGGGIAGAALALALARR-GWQVTLYEA 291
>gnl|CDD|183292 PRK11728, PRK11728, hydroxyglutarate oxidase; Provisional.
Length = 393
Score = 34.4 bits (80), Expect = 0.15
Identities = 14/32 (43%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Query: 76 YDFVVVGGGVAGPVVAGRLVE-NPNWKVLLLE 106
YDFV++GGG+ G A +L E P ++ +LE
Sbjct: 3 YDFVIIGGGIVGLSTAMQLQERYPGARIAVLE 34
>gnl|CDD|216176 pfam00890, FAD_binding_2, FAD binding domain. This family includes
members that bind FAD. This family includes the
flavoprotein subunits from succinate and fumarate
dehydrogenase, aspartate oxidase and the alpha subunit
of adenylylsulphate reductase.
Length = 401
Score = 34.2 bits (79), Expect = 0.18
Identities = 16/104 (15%), Positives = 38/104 (36%), Gaps = 9/104 (8%)
Query: 276 LRDKYKQDNLKVQLNAHVMKLNIDPKTKRALSVQFKDTNTNEIKTVKAKKEIILTAGAIG 335
L + + + Q L ++ R V ++ ++A ++L G G
Sbjct: 146 LLEGALKRGIDFQPRHPADDLIVE--DGRVTGVVVENRRNGREVRIRAIAGVLLATGGFG 203
Query: 336 S-PQLLMLSG-----VGPKSHL-DELGIETISDLRVGYNLVHHV 372
+LL+ + GP ++ D + + + + +L+ V
Sbjct: 204 RNAELLLPAAGYADTTGPPANTGDGIALALRAGAALTDDLMEFV 247
>gnl|CDD|236001 PRK07364, PRK07364, 2-octaprenyl-6-methoxyphenyl hydroxylase;
Validated.
Length = 415
Score = 34.2 bits (79), Expect = 0.20
Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Query: 75 EYDFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGPDEPTVT 115
YD +VGGG+ G +A L ++ ++ L+EA P E
Sbjct: 18 TYDVAIVGGGIVGLTLAAAL-KDSGLRIALIEAQPAEAAAA 57
>gnl|CDD|183983 PRK13339, PRK13339, malate:quinone oxidoreductase; Reviewed.
Length = 497
Score = 33.9 bits (78), Expect = 0.26
Identities = 21/71 (29%), Positives = 28/71 (39%), Gaps = 4/71 (5%)
Query: 281 KQDNLKVQLNAHVMKLNIDPKTKRALSVQFKDTNTNEIKTVKAKKEIILTAGAIGSPQLL 340
N +V+ N V+ L V KD NT E + A + + AG P LL
Sbjct: 196 SHPNAQVKYNHEVVDLERLSDGG--WEVTVKDRNTGEKREQVADY-VFIGAGGGAIP-LL 251
Query: 341 MLSGVGPKSHL 351
SG+ HL
Sbjct: 252 QKSGIPESKHL 262
>gnl|CDD|233672 TIGR01989, COQ6, ubiquinone biosynthesis monooxygenase COQ6. This
model represents the monooxygenase responsible for the
4-hydroxylateion of the phenol ring in the aerobic
biosynthesis of ubiquinone.
Length = 437
Score = 33.6 bits (77), Expect = 0.31
Identities = 17/36 (47%), Positives = 22/36 (61%), Gaps = 3/36 (8%)
Query: 76 YDFVVVGGGVAGPVVAGRLVENP---NWKVLLLEAG 108
+D V+VGGG G +A L NP + KVLLL+A
Sbjct: 1 FDVVIVGGGPVGLALAAALGNNPLTKDLKVLLLDAV 36
>gnl|CDD|224154 COG1233, COG1233, Phytoene dehydrogenase and related proteins
[Secondary metabolites biosynthesis, transport, and
catabolism].
Length = 487
Score = 33.6 bits (77), Expect = 0.35
Identities = 13/34 (38%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 74 EEYDFVVVGGGVAGPVVAGRLVENPNWKVLLLEA 107
YD VV+G G+ G A L KV +LE
Sbjct: 2 PMYDVVVIGAGLNGLAAAALLARA-GLKVTVLEK 34
>gnl|CDD|215314 PLN02576, PLN02576, protoporphyrinogen oxidase.
Length = 496
Score = 33.1 bits (76), Expect = 0.42
Identities = 13/33 (39%), Positives = 15/33 (45%)
Query: 75 EYDFVVVGGGVAGPVVAGRLVENPNWKVLLLEA 107
D VVG GV+G A L VL+ EA
Sbjct: 12 SKDVAVVGAGVSGLAAAYALASKHGVNVLVTEA 44
>gnl|CDD|223981 COG1053, SdhA, Succinate dehydrogenase/fumarate reductase,
flavoprotein subunit [Energy production and conversion].
Length = 562
Score = 32.7 bits (75), Expect = 0.59
Identities = 23/58 (39%), Positives = 29/58 (50%), Gaps = 4/58 (6%)
Query: 75 EYDFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGPDEP--TVTSVPGFAASAVGTHLD 130
E+D VV+GGG AG A E KV LL P + TV + G A A+G +D
Sbjct: 6 EFDVVVIGGGGAGLRAAIEAAEA-GLKVALLSKAPPKRGHTVAAQGGINA-ALGNTVD 61
>gnl|CDD|176459 cd03586, PolY_Pol_IV_kappa, DNA Polymerase IV/Kappa. Pol IV, also
known as Pol kappa, DinB, and Dpo4, is a translesion
synthesis (TLS) polymerase. Translesion synthesis is a
process that allows the bypass of a variety of DNA
lesions. TLS polymerases lack proofreading activity and
have low fidelity and low processivity. They use
damaged DNA as templates and insert nucleotides opposite
the lesions. Known primarily as Pol IV in prokaryotes
and Pol kappa in eukaryotes, this polymerase has a
propensity for generating frameshift mutations. The
eukaryotic Pol kappa differs from Pol IV and Dpo4 by an
N-terminal extension of ~75 residues known as the
"N-clasp" region. The structure of Pol kappa shows DNA
that is almost totally encircled by Pol kappa, with the
N-clasp region augmenting the interactions between DNA
and the polymerase. Pol kappa is more resistant than Pol
eta and Pol iota to bulky guanine adducts and is
efficient at catalyzing the incorporation of dCTP.
Bacterial pol IV has a higher error rate than other
Y-family polymerases.
Length = 334
Score = 32.1 bits (74), Expect = 0.70
Identities = 12/24 (50%), Positives = 15/24 (62%), Gaps = 2/24 (8%)
Query: 342 LSGVGPKS--HLDELGIETISDLR 363
+ GVG + L ELGI+TI DL
Sbjct: 176 IPGVGKVTAEKLKELGIKTIGDLA 199
>gnl|CDD|235774 PRK06292, PRK06292, dihydrolipoamide dehydrogenase; Validated.
Length = 460
Score = 32.5 bits (75), Expect = 0.70
Identities = 17/36 (47%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 74 EEYDFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGP 109
E+YD +V+G G AG V A R KV L+E GP
Sbjct: 2 EKYDVIVIGAGPAGYVAA-RRAAKLGKKVALIEKGP 36
>gnl|CDD|218866 pfam06039, Mqo, Malate:quinone oxidoreductase (Mqo). This family
consists of several bacterial Malate:quinone
oxidoreductase (Mqo) proteins (EC:1.1.99.16). Mqo takes
part in the citric acid cycle. It oxidises L-malate to
oxaloacetate and donates electrons to ubiquinone-1 and
other artificial acceptors or, via the electron transfer
chain, to oxygen. NAD is not an acceptor and the natural
direct acceptor for the enzyme is most likely a quinone.
The enzyme is therefore called malate:quinone
oxidoreductase, abbreviated to Mqo. Mqo is a peripheral
membrane protein and can be released from the membrane
by addition of chelators.
Length = 489
Score = 32.3 bits (74), Expect = 0.78
Identities = 22/73 (30%), Positives = 36/73 (49%), Gaps = 4/73 (5%)
Query: 273 RMFLRDKYKQDNLKVQLNAHVMKLNIDPKTKRALSVQFKDTNTNEIKTVKAKKEIILTAG 332
R + ++ N+++Q N V +I + +V KD NT + +T+KAK I G
Sbjct: 186 RQLFKYLQQKPNVELQYNHEV--RDIKRNSDGTWTVTVKDLNTGDKRTIKAKFVFIGAGG 243
Query: 333 AIGSPQLLMLSGV 345
G+ LL SG+
Sbjct: 244 --GALPLLQKSGI 254
>gnl|CDD|132263 TIGR03219, salicylate_mono, salicylate 1-monooxygenase. Members of
this protein family are salicylate 1-monooxygenase, also
called salicylate hydroxylase. This enzyme converts
salicylate to catechol, which is a common intermediate
in the degradation of a number of aromatic compounds
(phenol, toluene, benzoate, etc.). The gene for this
protein may occur in catechol degradation genes, such as
those of the meta-cleavage pathway.
Length = 414
Score = 32.1 bits (73), Expect = 0.78
Identities = 17/46 (36%), Positives = 26/46 (56%)
Query: 80 VVGGGVAGPVVAGRLVENPNWKVLLLEAGPDEPTVTSVPGFAASAV 125
++GGG+AG +A L ++ + V L EA P V + F A+AV
Sbjct: 5 IIGGGIAGVALALNLCKHSHLNVQLFEAAPAFGEVGAGVSFGANAV 50
>gnl|CDD|235584 PRK05732, PRK05732, 2-octaprenyl-6-methoxyphenyl hydroxylase;
Validated.
Length = 395
Score = 32.1 bits (74), Expect = 0.81
Identities = 20/52 (38%), Positives = 26/52 (50%), Gaps = 6/52 (11%)
Query: 76 YDFVVVGGGVAGPVVA---GRLVENPNWKVLLLEAGPDEPTVTSVPGFAASA 124
D ++VGGG+AG +A RL V L+EA P + PGF A A
Sbjct: 4 MDVIIVGGGMAGATLALALSRLSH-GGLPVALIEA--FAPESDAHPGFDARA 52
>gnl|CDD|224152 COG1231, COG1231, Monoamine oxidase [Amino acid transport and
metabolism].
Length = 450
Score = 32.0 bits (73), Expect = 0.84
Identities = 11/31 (35%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Query: 77 DFVVVGGGVAGPVVAGRLVENPNWKVLLLEA 107
D ++VG G+AG + A ++ ++V +LEA
Sbjct: 9 DVIIVGAGLAG-LSAAYELKKAGYQVQILEA 38
>gnl|CDD|223651 COG0578, GlpA, Glycerol-3-phosphate dehydrogenase [Energy
production and conversion].
Length = 532
Score = 32.2 bits (74), Expect = 0.89
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 70 RPLQEEYDFVVVGGGVAGPVVAGRLVENPNWKVLLLEAG 108
R EE+D +V+GGG+ G +A KV L+E G
Sbjct: 7 RLRMEEFDVIVIGGGITGAGIARDAAGR-GLKVALVEKG 44
>gnl|CDD|178267 PLN02661, PLN02661, Putative thiazole synthesis.
Length = 357
Score = 32.1 bits (73), Expect = 0.93
Identities = 15/32 (46%), Positives = 20/32 (62%)
Query: 75 EYDFVVVGGGVAGPVVAGRLVENPNWKVLLLE 106
+ D V+VG G AG A L +NPN KV ++E
Sbjct: 92 DTDVVIVGAGSAGLSCAYELSKNPNVKVAIIE 123
>gnl|CDD|223727 COG0654, UbiH, 2-polyprenyl-6-methoxyphenol hydroxylase and related
FAD-dependent oxidoreductases [Coenzyme metabolism /
Energy production and conversion].
Length = 387
Score = 32.0 bits (73), Expect = 0.94
Identities = 15/50 (30%), Positives = 19/50 (38%), Gaps = 5/50 (10%)
Query: 76 YDFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGPDEPTVTSVPGFAASAV 125
D +VG G AG +A L V LLE P E + A+
Sbjct: 3 LDVAIVGAGPAGLALALALARAG-LDVTLLERAPREL----LERGRGIAL 47
>gnl|CDD|233693 TIGR02032, GG-red-SF, geranylgeranyl reductase family. This model
represents a subfamily which includes geranylgeranyl
reductases involved in chlorophyll and
bacteriochlorophyll biosynthesis as well as other
related enzymes which may also act on geranylgeranyl
groups or related substrates [Biosynthesis of cofactors,
prosthetic groups, and carriers, Chlorophyll and
bacteriochlorphyll].
Length = 295
Score = 31.5 bits (72), Expect = 1.1
Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 76 YDFVVVGGGVAGPVVAGRLVENPNWKVLLLE 106
YD VVVG G AG A + + +VLLLE
Sbjct: 1 YDVVVVGAGPAG-ASAAYRLADKGLRVLLLE 30
>gnl|CDD|223636 COG0562, Glf, UDP-galactopyranose mutase [Cell envelope biogenesis,
outer membrane].
Length = 374
Score = 31.5 bits (72), Expect = 1.2
Identities = 10/32 (31%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Query: 76 YDFVVVGGGVAGPVVAGRLVENPNWKVLLLEA 107
+D+++VG G++G V+A + +VL++E
Sbjct: 2 FDYLIVGAGLSGAVIA-EVAAQLGKRVLIVEK 32
>gnl|CDD|221798 pfam12831, FAD_oxidored, FAD dependent oxidoreductase. This family
of proteins contains FAD dependent oxidoreductases and
related proteins.
Length = 415
Score = 31.4 bits (72), Expect = 1.3
Identities = 17/36 (47%), Positives = 19/36 (52%), Gaps = 7/36 (19%)
Query: 77 DFVVVGGGVAG---PVVAGRLVENPNWKVLLLEAGP 109
D VVVGGG AG + A RL KVLL+E
Sbjct: 1 DVVVVGGGPAGVAAAIAAARL----GAKVLLVERRG 32
>gnl|CDD|224153 COG1232, HemY, Protoporphyrinogen oxidase [Coenzyme metabolism].
Length = 444
Score = 31.5 bits (72), Expect = 1.3
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 78 FVVVGGGVAGPVVAGRLVE-NPNWKVLLLEAGPD 110
++GGG+AG A RL + P+ +V L EA
Sbjct: 3 IAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADDR 36
>gnl|CDD|216542 pfam01512, Complex1_51K, Respiratory-chain NADH dehydrogenase 51 Kd
subunit.
Length = 150
Score = 30.1 bits (69), Expect = 1.6
Identities = 9/31 (29%), Positives = 14/31 (45%)
Query: 478 PKIHSNYLVMKQDIDVIIEGIRIIQKLTRTK 508
P + + +M++ IIEGI I K
Sbjct: 40 PGLTKDRRLMRERPHEIIEGILIAAYALGAK 70
>gnl|CDD|177909 PLN02268, PLN02268, probable polyamine oxidase.
Length = 435
Score = 30.8 bits (70), Expect = 2.0
Identities = 13/29 (44%), Positives = 22/29 (75%), Gaps = 1/29 (3%)
Query: 79 VVVGGGVAGPVVAGRLVENPNWKVLLLEA 107
+V+GGG+AG + A R + + ++KV LLE+
Sbjct: 4 IVIGGGIAG-IAAARALHDASFKVTLLES 31
>gnl|CDD|232791 TIGR00031, UDP-GALP_mutase, UDP-galactopyranose mutase. This
enzyme is involved in the conversion of UDP-GALP into
UDP-GALF through a 2-keto intermediate. It contains FAD
as a cofactor. The gene is known as glf, ceoA, and rfbD.
It is known experimentally in E. coli, Mycobacterium
tuberculosis, and Klebsiella pneumoniae [Cell envelope,
Biosynthesis and degradation of surface polysaccharides
and lipopolysaccharides].
Length = 377
Score = 30.9 bits (70), Expect = 2.2
Identities = 12/31 (38%), Positives = 22/31 (70%), Gaps = 1/31 (3%)
Query: 76 YDFVVVGGGVAGPVVAGRLVENPNWKVLLLE 106
+D+++VG G++G V+A L N +VL++E
Sbjct: 2 FDYIIVGAGLSGIVLANIL-AQLNKRVLVVE 31
>gnl|CDD|182194 PRK10015, PRK10015, oxidoreductase; Provisional.
Length = 429
Score = 30.7 bits (69), Expect = 2.6
Identities = 23/65 (35%), Positives = 32/65 (49%), Gaps = 14/65 (21%)
Query: 73 QEEYDFVVVGGGVAGPVVAGRLVENPNWKVLLLE----AGPDEPT---------VTSVPG 119
+++D +VVG GVAG VA ++ VL++E AG T +PG
Sbjct: 3 DDKFDAIVVGAGVAG-SVAALVMARAGLDVLVIERGDSAGCKNMTGGRLYAHTLEAIIPG 61
Query: 120 FAASA 124
FAASA
Sbjct: 62 FAASA 66
>gnl|CDD|185420 PTZ00058, PTZ00058, glutathione reductase; Provisional.
Length = 561
Score = 30.7 bits (69), Expect = 2.8
Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 76 YDFVVVGGGVAGPVVAGRLVENPNWKVLLLE 106
YD +V+GGG G A R N KV L+E
Sbjct: 49 YDLIVIGGGSGGMAAARRAARNK-AKVALVE 78
>gnl|CDD|223522 COG0445, GidA, Flavin-dependent tRNA uridine
5-carboxymethylaminomethyl modification enzyme GidA
[Cell cycle control, cell division, chromosome
partitioning].
Length = 621
Score = 30.6 bits (70), Expect = 2.8
Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Query: 73 QEEYDFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGPD 110
+EYD +V+GGG AG V A K LLL D
Sbjct: 2 PKEYDVIVIGGGHAG-VEAALAAARMGAKTLLLTLNLD 38
>gnl|CDD|219686 pfam07992, Pyr_redox_2, Pyridine nucleotide-disulphide
oxidoreductase. This family includes both class I and
class II oxidoreductases and also NADH oxidases and
peroxidases. This domain is actually a small NADH
binding domain within a larger FAD binding domain.
Length = 283
Score = 30.0 bits (68), Expect = 3.1
Identities = 12/36 (33%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Query: 77 DFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGPDEP 112
D V++GGG AG + A + KV L+E
Sbjct: 1 DVVIIGGGPAG-LAAAIRLARLGLKVALIEREGGTC 35
>gnl|CDD|239345 cd03047, GST_N_2, GST_N family, unknown subfamily 2; composed of
uncharacterized bacterial proteins with similarity to
GSTs. GSTs are cytosolic dimeric proteins involved in
cellular detoxification by catalyzing the conjugation of
glutathione (GSH) with a wide range of endogenous and
xenobiotic alkylating agents, including carcinogens,
therapeutic drugs, environmental toxins and products of
oxidative stress. GSTs also show GSH peroxidase activity
and are involved in the synthesis of prostaglandins and
leukotrienes. The GST fold contains an N-terminal
TRX-fold domain and a C-terminal alpha helical domain,
with an active site located in a cleft between the two
domains. The sequence from Burkholderia cepacia was
identified as part of a gene cluster involved in the
degradation of 2,4,5-trichlorophenoxyacetic acid. Some
GSTs (e.g. Class Zeta and Delta) are known to catalyze
dechlorination reactions.
Length = 73
Score = 28.0 bits (63), Expect = 3.1
Identities = 18/54 (33%), Positives = 23/54 (42%), Gaps = 5/54 (9%)
Query: 60 GRASSNLVRN-----RPLQEEYDFVVVGGGVAGPVVAGRLVENPNWKVLLLEAG 108
GR SS V+ L Y+ + GG G L NPN +V +LE G
Sbjct: 5 GRRSSINVQKVLWLLDELGLPYERIDAGGQFGGLDTPEFLAMNPNGRVPVLEDG 58
>gnl|CDD|236794 PRK10917, PRK10917, ATP-dependent DNA helicase RecG; Provisional.
Length = 681
Score = 30.5 bits (70), Expect = 3.2
Identities = 13/23 (56%), Positives = 16/23 (69%), Gaps = 2/23 (8%)
Query: 342 LSGVGPKS--HLDELGIETISDL 362
L GVGPK+ L +LGI T+ DL
Sbjct: 14 LKGVGPKTAEKLAKLGIHTVQDL 36
>gnl|CDD|143386 cd00141, NT_POLXc, Nucleotidyltransferase (NT) domain of family X
DNA Polymerases. X family polymerases fill in short
gaps during DNA repair. They are relatively inaccurate
enzymes and play roles in base excision repair, in
non-homologous end joining (NHEJ) which acts mainly to
repair damage due to ionizing radiation, and in V(D)J
recombination. This family includes eukaryotic Pol beta,
Pol lambda, Pol mu, and terminal deoxyribonucleotidyl
transferase (TdT). Pol beta and Pol lambda are primarily
DNA template-dependent polymerases. TdT is a DNA
template-independent polymerase. Pol mu has both
template dependent and template independent activities.
This subgroup belongs to the Pol beta-like NT
superfamily. In the majority of enzymes in this
superfamily, two carboxylates, Dx[D/E], together with a
third more distal carboxylate, coordinate two divalent
metal cations involved in a two-metal ion mechanism of
nucleotide addition. These three carboxylate residues
are fairly well conserved in this family.
Length = 307
Score = 29.9 bits (68), Expect = 3.5
Identities = 19/45 (42%), Positives = 25/45 (55%), Gaps = 4/45 (8%)
Query: 338 QLLMLSGVGPK--SHLDELGIETISDLR--VGYNLVHHVGANLKF 378
LL + GVGPK L ELGI T+ DLR G L ++ L++
Sbjct: 86 LLLRVPGVGPKTARKLYELGIRTLEDLRKAAGAKLEQNILIGLEY 130
>gnl|CDD|236214 PRK08274, PRK08274, tricarballylate dehydrogenase; Validated.
Length = 466
Score = 30.2 bits (69), Expect = 3.6
Identities = 16/45 (35%), Positives = 18/45 (40%), Gaps = 13/45 (28%)
Query: 73 QEEYDFVVVGGGVAGPVVA------GRLVENPNWKVLLLEAGPDE 111
D +V+GGG A A G VLLLEA P E
Sbjct: 2 ASMVDVLVIGGGNAALCAALAAREAGA-------SVLLLEAAPRE 39
>gnl|CDD|236927 PRK11551, PRK11551, putative 3-hydroxyphenylpropionic transporter
MhpT; Provisional.
Length = 406
Score = 30.3 bits (69), Expect = 3.6
Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 14/52 (26%)
Query: 79 VVVG--GGVAGPVVAGRLVENPNWKVLLLEAGPDEPTV--TSVPGFAASAVG 126
V VG G +AGP++AG+ LL G V S+P +A+
Sbjct: 350 VAVGRLGSMAGPLLAGQ----------LLALGRSTVGVIGASIPVILVAALA 391
>gnl|CDD|237027 PRK12266, glpD, glycerol-3-phosphate dehydrogenase; Reviewed.
Length = 508
Score = 30.1 bits (69), Expect = 3.9
Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 9/43 (20%)
Query: 70 RPLQEEYDFVVVGGGVAGPVVA----GRLVENPNWKVLLLEAG 108
+ E YD +V+GGG+ G +A GR VLL E
Sbjct: 1 MTMMETYDLLVIGGGINGAGIARDAAGR-----GLSVLLCEQD 38
>gnl|CDD|236341 PRK08850, PRK08850, 2-octaprenyl-6-methoxyphenol hydroxylase;
Validated.
Length = 405
Score = 30.1 bits (68), Expect = 4.1
Identities = 12/49 (24%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Query: 77 DFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGPDEPTVTSVPGFAASAV 125
D ++GGG+ G +A L + + ++ ++E E + +P SA+
Sbjct: 6 DVAIIGGGMVGLALAAAL-KESDLRIAVIEGQLPEEALNELPDVRVSAL 53
>gnl|CDD|236111 PRK07843, PRK07843, 3-ketosteroid-delta-1-dehydrogenase;
Reviewed.
Length = 557
Score = 30.0 bits (68), Expect = 4.6
Identities = 12/21 (57%), Positives = 13/21 (61%)
Query: 71 PLQEEYDFVVVGGGVAGPVVA 91
+EYD VVVG G AG V A
Sbjct: 3 MTVQEYDVVVVGSGAAGMVAA 23
>gnl|CDD|235035 PRK02406, PRK02406, DNA polymerase IV; Validated.
Length = 343
Score = 29.7 bits (68), Expect = 4.9
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 6/35 (17%)
Query: 344 GVGPKS--HLDELGIETISDLRVGYN---LVHHVG 373
GVG + L LGI T +DL+ Y+ L+ H G
Sbjct: 175 GVGKVTAEKLHALGIYTCADLQ-KYDLAELIRHFG 208
>gnl|CDD|226103 COG3573, COG3573, Predicted oxidoreductase [General function
prediction only].
Length = 552
Score = 29.8 bits (67), Expect = 5.0
Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Query: 74 EEYDFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGPDE 111
D +VVG G+AG V A L + +VL+L+ ++
Sbjct: 4 LTADVIVVGAGLAGLVAAAELADA-GKRVLILDQEGEQ 40
>gnl|CDD|236102 PRK07804, PRK07804, L-aspartate oxidase; Provisional.
Length = 541
Score = 29.6 bits (67), Expect = 5.2
Identities = 13/39 (33%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Query: 77 DFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGPDEPTVT 115
D VVVG GVAG + A +VL++ + T
Sbjct: 18 DVVVVGSGVAG-LTAALAARRAGRRVLVVTKAALDDGST 55
>gnl|CDD|223523 COG0446, HcaD, Uncharacterized NAD(FAD)-dependent dehydrogenases
[General function prediction only].
Length = 415
Score = 29.5 bits (66), Expect = 5.4
Identities = 11/33 (33%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
Query: 78 FVVVGGGVAGPVVAGRLVE-NPNWKVLLLEAGP 109
V+VGGG AG A L ++ L+ P
Sbjct: 1 IVIVGGGAAGLSAATTLRRLLLAAEITLIGREP 33
>gnl|CDD|181564 PRK08849, PRK08849,
2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol
hydroxylase; Provisional.
Length = 384
Score = 29.4 bits (66), Expect = 5.6
Identities = 12/28 (42%), Positives = 14/28 (50%), Gaps = 6/28 (21%)
Query: 74 EEYDFVVVGGGVAGPVVA------GRLV 95
+YD VVGGG+ G A GR V
Sbjct: 2 NKYDIAVVGGGMVGAATALGFAKQGRSV 29
>gnl|CDD|235798 PRK06416, PRK06416, dihydrolipoamide dehydrogenase; Reviewed.
Length = 462
Score = 29.7 bits (68), Expect = 5.6
Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 74 EEYDFVVVGGGVAGPVVAGRLVENPNWKVLLLEAG 108
EYD +V+G G G V A R + KV ++E
Sbjct: 3 FEYDVIVIGAGPGGYVAAIRAAQL-GLKVAIVEKE 36
>gnl|CDD|183782 PRK12834, PRK12834, putative FAD-binding dehydrogenase; Reviewed.
Length = 549
Score = 29.5 bits (67), Expect = 6.7
Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 73 QEEYDFVVVGGGVAGPVVAGRLVENPNWKVLLLE 106
+ D +VVG G+AG V A L + +VLLL+
Sbjct: 2 AMDADVIVVGAGLAGLVAAAELADA-GKRVLLLD 34
>gnl|CDD|217590 pfam03486, HI0933_like, HI0933-like protein.
Length = 405
Score = 29.1 bits (66), Expect = 6.7
Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 76 YDFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGP 109
YD +V+GGG AG + A + +VLL++ G
Sbjct: 1 YDVIVIGGGAAGLMAAISAAK-RGRRVLLIDKGK 33
>gnl|CDD|235977 PRK07233, PRK07233, hypothetical protein; Provisional.
Length = 434
Score = 29.1 bits (66), Expect = 7.0
Identities = 12/33 (36%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 78 FVVVGGGVAGPVVAGRLVENPNWKVLLLEAGPD 110
+VGGG+AG A RL + +V + EA
Sbjct: 2 IAIVGGGIAGLAAAYRLAKR-GHEVTVFEADDQ 33
>gnl|CDD|235905 PRK06996, PRK06996, hypothetical protein; Provisional.
Length = 398
Score = 29.3 bits (66), Expect = 7.0
Identities = 10/46 (21%), Positives = 16/46 (34%), Gaps = 4/46 (8%)
Query: 71 PLQEEYDFVVVGGGVAGPVVAGRLVENPNWK----VLLLEAGPDEP 112
++D +VG G G +AG L + L+ P
Sbjct: 7 MAAPDFDIAIVGAGPVGLALAGWLARRSATRALSIALIDAREPAAS 52
>gnl|CDD|235118 PRK03348, PRK03348, DNA polymerase IV; Provisional.
Length = 454
Score = 29.1 bits (66), Expect = 7.6
Identities = 13/25 (52%), Positives = 15/25 (60%), Gaps = 2/25 (8%)
Query: 341 MLSGVGP--KSHLDELGIETISDLR 363
L G+GP + L LGIETI DL
Sbjct: 184 RLWGIGPVTEEKLHRLGIETIGDLA 208
>gnl|CDD|223566 COG0492, TrxB, Thioredoxin reductase [Posttranslational
modification, protein turnover, chaperones].
Length = 305
Score = 28.8 bits (65), Expect = 8.2
Identities = 18/64 (28%), Positives = 28/64 (43%), Gaps = 14/64 (21%)
Query: 73 QEEYDFVVVGGGVAG---PVVAGRLVENPNWKVLLLEAGPD-------EPTVTSVPGFAA 122
+ YD +++GGG AG + A R KV+L+ G + V + PGF
Sbjct: 1 MKIYDVIIIGGGPAGLTAAIYAARA----GLKVVLILEGGEPGGQLTKTTDVENYPGFPG 56
Query: 123 SAVG 126
+G
Sbjct: 57 GILG 60
>gnl|CDD|224992 COG2081, COG2081, Predicted flavoproteins [General function
prediction only].
Length = 408
Score = 29.1 bits (66), Expect = 8.2
Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 7/39 (17%)
Query: 74 EEYDFVVVGGGVAG---PVVAGRLVENPNWKVLLLEAGP 109
E +D +++GGG AG + A + +VLL++ GP
Sbjct: 2 ERFDVIIIGGGPAGLMAAISAAK----AGRRVLLIDKGP 36
>gnl|CDD|224172 COG1252, Ndh, NADH dehydrogenase, FAD-containing subunit [Energy
production and conversion].
Length = 405
Score = 29.1 bits (66), Expect = 8.3
Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 12/45 (26%)
Query: 77 DFVVVGGGVAGPVVAGRLVE------------NPNWKVLLLEAGP 109
V+VGGG G +AG L E +V+L+EAGP
Sbjct: 157 TIVIVGGGPTGVELAGELAERLHRLLKKFRVDPSELRVILVEAGP 201
>gnl|CDD|185275 PRK15377, PRK15377, E3 ubiquitin-protein ligase SopA; Provisional.
Length = 782
Score = 28.9 bits (64), Expect = 9.4
Identities = 12/42 (28%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Query: 236 KAGKELGYASGDFNGANQIGVNFAQVMVDNGVRSSTP--RMF 275
+AG+EL YA DF+ A+ +NF+++ + + F
Sbjct: 185 EAGEELTYADRDFSNADFRNINFSKINPSGFMLRDGDIIKGF 226
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.317 0.135 0.409
Gapped
Lambda K H
0.267 0.0851 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 31,238,845
Number of extensions: 3061754
Number of successful extensions: 2727
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2687
Number of HSP's successfully gapped: 94
Length of query: 614
Length of database: 10,937,602
Length adjustment: 103
Effective length of query: 511
Effective length of database: 6,369,140
Effective search space: 3254630540
Effective search space used: 3254630540
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 62 (27.4 bits)