RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy1040
(614 letters)
>1gpe_A Protein (glucose oxidase); oxidoreductase(flavoprotein); HET: NAG
BMA MAN FAD; 1.80A {Penicillium amagasakiense} SCOP:
c.3.1.2 d.16.1.1
Length = 587
Score = 532 bits (1373), Expect = 0.0
Identities = 133/576 (23%), Positives = 230/576 (39%), Gaps = 45/576 (7%)
Query: 72 LQEEYDFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGP---DEPTVTSVPGFAASAVGTH 128
+ YD+++ GGG+ G VA +L ENP KVL++E G ++ + P GT
Sbjct: 21 AGKTYDYIIAGGGLTGLTVAAKLTENPKIKVLVIEKGFYESNDGAIIEDPNAYGQIFGTT 80
Query: 129 LDWKYKTE--RNKYACLSTGGICEWPRGKMLAGTGAMTGMMYTRSHPSIYDEWQRQ-GNP 185
+D Y T N GK L G+ + G +TR D W++ G
Sbjct: 81 VDQNYLTVPLIN-------NRTNNIKAGKGLGGSTLINGDSWTRPDKVQIDSWEKVFGME 133
Query: 186 GWGFSDVLRYFIKSEHN--------LNRDQVDPEYHGYDGPLKVQRFSSYP---PIGEDI 234
GW + ++ Y K+E + HG +G ++ + PI + +
Sbjct: 134 GWNWDNMFEYMKKAEAARTPTAAQLAAGHSFNATCHGTNGTVQSGARDNGQPWSPIMKAL 193
Query: 235 IKAGKELGYA-SGDFNGANQIGVNFAQVMVD-NGVRSSTPRMFLRDKYKQDNLKVQLNAH 292
+ LG DF + GV+ +D N VR R +L Y++ NL++
Sbjct: 194 MNTVSALGVPVQQDFLCGHPRGVSMIMNNLDENQVRVDAARAWLLPNYQRSNLEILTGQM 253
Query: 293 VMKLNIDPKT--KRALSVQFKDTNTNEIKTVKAKKEIILTAGAIGSPQLLMLSGVGPKSH 350
V K+ +A+ V F TN V AK E++L AG+ SP +L SG+G KS
Sbjct: 254 VGKVLFKQTASGPQAVGVNFG-TNKAVNFDVFAKHEVLLAAGSAISPLILEYSGIGLKSV 312
Query: 351 LDELGIETISDLRVGYNLVHHVGANLKFSI-----LDNGVSDNNGEIDEKGTYLEESNEG 405
LD+ + + DL VG N+ + + G Y ++ +
Sbjct: 313 LDQANVTQLLDLPVGINMQDQTTTTVSSRASSAGAGQGQAVFFANFTETFGDYAPQARDL 372
Query: 406 LSSMKGNM-DEMLNDGRPGRS-----ILSNTFNALFSNNNKEEDKMPCGRRSIYARPTNL 459
L++ +E + G N N L + + I +L
Sbjct: 373 LNTKLDQWAEETVARGGFHNVTALKVQYENYRNWLLDEDVAFAELFMDTEGKINFDLWDL 432
Query: 460 LPISRGRLVLRSADPFEYP-KIHSNYLVMKQDIDVIIEGIRIIQKLTRTKALQKWDFQID 518
+P +RG + + S+DP+ + + + + D+ ++ + LT A++++
Sbjct: 433 IPFTRGSVHILSSDPYLWQFANDPKFFLNEFDLLGQAAASKLARDLTSQGAMKEY---FA 489
Query: 519 STKMPECKHFEWDSNEYWECYIKTYTLPENHPGGTCKMGPADDYSSVVDAQLRIHGVPNL 578
+P + + W Y+ P H +C M + VVDA +++G L
Sbjct: 490 GETLPGYNLVQNATLSQWSDYVLQNFRPNWHAVSSCSMMS-RELGGVVDATAKVYGTQGL 548
Query: 579 RVMDASIFPTNINSNPIATIIMIAEKGADMVKESWR 614
RV+D SI PT ++S+ + +A K AD + + +
Sbjct: 549 RVIDGSIPPTQVSSHVMTIFYGMALKVADAILDDYA 584
>3qvp_A Glucose oxidase; oxidoreductase; HET: NAG BMA MAN FAD; 1.20A
{Aspergillus niger} PDB: 1gal_A* 1cf3_A* 3qvr_A*
Length = 583
Score = 519 bits (1339), Expect = e-179
Identities = 143/573 (24%), Positives = 239/573 (41%), Gaps = 42/573 (7%)
Query: 74 EEYDFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGP---DEPTVTSVPGFAASAVGTHLD 130
D+++ GGG+ G A RL ENPN VL++E+G D + G+ +D
Sbjct: 18 RTVDYIIAGGGLTGLTTAARLTENPNISVLVIESGSYESDRGPIIEDLNAYGDIFGSSVD 77
Query: 131 WKYKTERNKYACLSTGG-ICEWPRGKMLAGTGAMTGMMYTRSHPSIYDEW-QRQGNPGWG 188
Y+T L+T G L G+ + G +TR H + D W GN GW
Sbjct: 78 HAYETV-----ELATNNQTALIRSGNGLGGSTLVNGGTWTRPHKAQVDSWETVFGNEGWN 132
Query: 189 FSDVLRYFIKSEHNLN--------RDQVDPEYHGYDGPLKVQRFSSYP---PIGEDIIKA 237
+ +V Y +++E + HG +G + + PI + ++ A
Sbjct: 133 WDNVAAYSLQAERARAPNAKQIAAGHYFNASCHGVNGTVHAGPRDTGDDYSPIVKALMSA 192
Query: 238 GKELGYA-SGDFNGANQIGVNFAQVMVD-NGVRSSTPRMFLRDKYKQDNLKVQLNAHVMK 295
++ G DF + GV+ + + VRS R +L Y++ NL+V +V K
Sbjct: 193 VEDRGVPTKKDFGCGDPHGVSMFPNTLHEDQVRSDAAREWLLPNYQRPNLQVLTGQYVGK 252
Query: 296 LNIDP--KTKRALSVQFKDTNTNEIKTVKAKKEIILTAGAIGSPQLLMLSGVGPKSHLDE 353
+ + T RA+ V+F V AK E++L AG+ SP +L SG+G KS L+
Sbjct: 253 VLLSQNGTTPRAVGVEFGTHK-GNTHNVYAKHEVLLAAGSAVSPTILEYSGIGMKSILEP 311
Query: 354 LGIETISDLRVGYNLVHHVGANLKFSI-----LDNGVSDNNGEIDEKGTYLEESNEGLSS 408
LGI+T+ DL VG NL A ++ I + + G Y E+++E L++
Sbjct: 312 LGIDTVVDLPVGLNLQDQTTATVRSRITSAGAGQGQAAWFATFNETFGDYSEKAHELLNT 371
Query: 409 MKGNMDEMLNDG------RPGRSILSNTFNALFSNNNKEEDKMPCGRRSIYARPTNLLPI 462
E N + + ++N + +LLP
Sbjct: 372 KLEQWAEEAVARGGFHNTTALLIQYENYRDWIVNHNVAYSELFLDTAGVASFDVWDLLPF 431
Query: 463 SRGRLVLRSADPF-EYPKIHSNYLVMKQDIDVIIEGIRIIQKLTRTKALQKWDFQIDSTK 521
+RG + + DP+ + Y + + D+ ++ + ++ + A+Q +
Sbjct: 432 TRGYVHILDKDPYLHHFAYDPQYFLNELDLLGQAAATQLARNISNSGAMQTY---FAGET 488
Query: 522 MPECKHFEWDSNEYWECYIKTYTLPENHPGGTCKMGPADDYSSVVDAQLRIHGVPNLRVM 581
+P W YI + P H GTC M P + VVD R++GV LRV+
Sbjct: 489 IPGDNLAYDADLSAWTEYIPYHFRPNYHGVGTCSMMP-KEMGGVVDNAARVYGVQGLRVI 547
Query: 582 DASIFPTNINSNPIATIIMIAEKGADMVKESWR 614
D SI PT ++S+ + +A K +D + E +
Sbjct: 548 DGSIPPTQMSSHVMTVFYAMALKISDAILEDYA 580
>3fim_B ARYL-alcohol oxidase; AAO, lignin degradation, oxidoreductase,
flavoprotein; HET: FAD; 2.55A {Pleurotus eryngii}
Length = 566
Score = 517 bits (1333), Expect = e-179
Identities = 148/573 (25%), Positives = 255/573 (44%), Gaps = 46/573 (8%)
Query: 75 EYDFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGP--DEPTVTSVP-GFAASAVGTHLDW 131
++D+VVVG G AG VVA RL E+P+ VL+LEAG + P + DW
Sbjct: 2 DFDYVVVGAGNAGNVVAARLTEDPDVSVLVLEAGVSDENVLGAEAPLLAPGLVPNSIFDW 61
Query: 132 KYKTERNKYACLSTGG-ICEWPRGKMLAGTGAMTGMMYTRSHPSIYDEW-QRQGNPGWGF 189
Y T A G +PRG+ML G+ ++ M+ R +D + G+ GW +
Sbjct: 62 NYTTT----AQAGYNGRSIAYPRGRMLGGSSSVHYMVMMRGSTEDFDRYAAVTGDEGWNW 117
Query: 190 SDVLRYFIKSEHN-------LNRDQVDPEYHGYDGPLKVQRFSSYPPIGEDIIKAGKELG 242
++ ++ K+E + P HG +G + + P+ + ++ +E
Sbjct: 118 DNIQQFVRKNEMVVPPADNHNTSGEFIPAVHGTNGSVSISLPGFPTPLDDRVLATTQEQS 177
Query: 243 Y---ASGDFNGANQIGVNFAQVMVDNGVRSSTPRMFLRDKYKQDNLKVQLNAHVMKLNID 299
+ D + +G++++ V NG RSS+ +LR + NL V +NA V KL
Sbjct: 178 EEFFFNPDMGTGHPLGISWSIASVGNGQRSSSSTAYLRPAQSRPNLSVLINAQVTKLVNS 237
Query: 300 PKTKRALS---VQFKDTNTNEIKTVKAKKEIILTAGAIGSPQLLMLSGVGPKSHLDELGI 356
T + V++ + TV AKKE++L+AG++G+P LL LSG+G ++ L +GI
Sbjct: 238 GTTNGLPAFRCVEYAEQEGAPTTTVCAKKEVVLSAGSVGTPILLQLSGIGDENDLSSVGI 297
Query: 357 ETISDLR-VGYNLVHHVGANLKFSI-----LDNGVSDNNGEIDEKGTYLEESNEGLSSM- 409
+TI + VG NL H+ F + DN D++ + + + G +
Sbjct: 298 DTIVNNPSVGRNLSDHLLLPAAFFVNSNQTFDNIFRDSSEFNVDLDQWT-NTRTGPLTAL 356
Query: 410 --------KGNMDEMLNDGRPGRSILSNTFN--ALFSNNNKEEDKMPCGRRSIY-ARPTN 458
+ + + P + N+ + +FSN S
Sbjct: 357 IANHLAWLRLPSNSSIFQTFPDPAAGPNSAHWETIFSNQWFHPAIPRPDTGSFMSVTNAL 416
Query: 459 LLPISRGRLVLRSADPFEYPKIHSNYLVMKQDIDVIIEGIRIIQKLTRTKALQKWDFQID 518
+ P++RG + L +++PF+ P I+ YL + DI +I+ ++ + +A + +
Sbjct: 417 ISPVARGDIKLATSNPFDKPLINPQYLSTEFDIFTMIQAVKSNLRFLSGQAWADF---VI 473
Query: 519 STKMPECKHFEWDSNEYWECYIKTYTLPENHPGGTCKMGPADDYSSVVDAQLRIHGVPNL 578
P + + E YI+ HP GT M P VVD L++ GV L
Sbjct: 474 RPFDPRLRDP--TDDAAIESYIRDNANTIFHPVGTASMSPRGASWGVVDPDLKVKGVDGL 531
Query: 579 RVMDASIFPTNINSNPIATIIMIAEKGADMVKE 611
R++D SI P N++ I ++ ++GAD++K
Sbjct: 532 RIVDGSILPFAPNAHTQGPIYLVGKQGADLIKA 564
>3q9t_A Choline dehydrogenase and related flavoproteins;
glucose-methanol-choline oxidoreductase family, formate
OXID formyl-FAD, oxidoreductase; HET: FAY; 2.24A
{Aspergillus oryzae}
Length = 577
Score = 498 bits (1285), Expect = e-171
Identities = 149/585 (25%), Positives = 227/585 (38%), Gaps = 59/585 (10%)
Query: 74 EEYDFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGPDEPTV---TSVPGFAASAVGTHLD 130
+DFV+VGGG AG VAGRL ENPN VL++EAG P + P A + D
Sbjct: 5 SHFDFVIVGGGTAGNTVAGRLAENPNVTVLIVEAGIGNPEDIPEITTPSSAMDLRNSKYD 64
Query: 131 WKYKTERNKYACLSTGGICEWP--RGKMLAGTGAMTGMMYTRSHPSIYDEWQRQGNPGWG 188
W YKT + E P RGK L G+ ++ + H + +D+W+ G W
Sbjct: 65 WAYKTTMVRRDD---YERIEKPNTRGKTLGGSSSLNYFTWVPGHKATFDQWEEFGGKEWT 121
Query: 189 FSDVLRYFIKSEHN---LNRDQVDPEYHGYDGPLKVQRFSSYP---PIGEDIIKAGKELG 242
+ ++ Y KS + E G GP+ + P E++ KA K +G
Sbjct: 122 WDPLVPYLRKSATYHDDPRLYSPELEKIGGGGPIPISHAELIDEMAPFRENLTKAWKSMG 181
Query: 243 Y-ASGDFNGANQIGVNFAQVMVDNGVRSSTPRMFLRDKYKQDNLKVQLNAHVMKLNIDPK 301
+ G+ + G RS + FL K + N+ + H +L I+
Sbjct: 182 QPLIENIYDGEMDGLTHCCDTIYRGQRSGS---FLFVK-NKPNITIVPEVHSKRLIINEA 237
Query: 302 TKRALSVQFKDTNTNEIKTVKAKKEIILTAGAIGSPQLLMLSGVGPKSHLDELGIETISD 361
+ V A +E+IL+ G +P+LLMLSG+GP L GI TI D
Sbjct: 238 DRTCKGVTVVTAA-GNELNFFADREVILSQGVFETPKLLMLSGIGPTRELSRHGINTIVD 296
Query: 362 LR-VGYNLVHHVGANLKF------SILDNGVSDNNGEIDEKGTYLEE------------- 401
R VG NL+ H G + D + Y +
Sbjct: 297 SRHVGQNLMDHPGVPFVLRVKDGFGMDDVLLRHGPKRDAVVSAYNKNRSGPVGSGLLELV 356
Query: 402 ----SNEGLSSMKGNMDEMLNDGRPGRSI------LSNTFNALFSNNNKEEDKMPCGRRS 451
++ L +G F +F + P
Sbjct: 357 GFPRIDKYLEKDAEYRKAKAANGGKDPFSPLGQPHFELDFVCMFGTAFQWHFPTPKTGDH 416
Query: 452 IYARPTNLLPISR-GRLVLRSADPFEYPKIHSNYLVMKQDIDVIIEGIRIIQK-LTRTKA 509
+ + PIS G + L SADPF+ P I+ N+ DI + EGIR L + +
Sbjct: 417 LTVVVDLVRPISDPGEVTLNSADPFQQPNINLNFFANDLDIIAMREGIRFSYDLLFKGEG 476
Query: 510 LQKWDFQIDSTKMPECKHFEWDSNEYWECYIKTYTLPENHPGGTCKMGPADDYSSVVDAQ 569
+ + ++ P DS++ + HP GT ++ D VVD +
Sbjct: 477 FKD----LVESEYPWEMPL--DSDKEMHRAVLDRCQTAFHPTGTARLSKNID-QGVVDPK 529
Query: 570 LRIHGVPNLRVMDASIFPTNINSNPIATIIMIAEKGADMVKESWR 614
L++HG+ LRV DAS+ P + ++ + EK ADM+K +
Sbjct: 530 LKVHGIKKLRVADASVIPIIPDCRIQNSVYAVGEKCADMIKAEHK 574
>2jbv_A Choline oxidase; alcohol oxidation, flavoenyzme oxidase, covalently
linked FAD, C4A-adduct, flavoprotein, oxidoreductase;
HET: FAO; 1.86A {Arthrobacter globiformis} PDB: 3nne_A*
3ljp_A*
Length = 546
Score = 465 bits (1199), Expect = e-159
Identities = 146/551 (26%), Positives = 238/551 (43%), Gaps = 39/551 (7%)
Query: 73 QEEYDFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGP--DEPTVTSVPGFAASAVGTHLD 130
E+D++VVGGG AG VA RL E+P V L+EAGP + + D
Sbjct: 11 DREFDYIVVGGGSAGAAVAARLSEDPAVSVALVEAGPDDRGVPEVLQLDRWMELLESGYD 70
Query: 131 WKYKTERNKYACLSTGGICEWPRGKMLAGTGAMTGMMYTRSHPSIYDEWQRQ-GNPGWGF 189
W Y E + R K++ G + + + DEW+ + G GW
Sbjct: 71 WDYPIEPQENG----NSFMRHARAKVMGGCSSHNSCIAFWAPREDLDEWEAKYGATGWNA 126
Query: 190 SDVLRYFIKSEHNLNRDQVDPEYHGYDGPLKVQRFSSYPPIGEDIIKAGKELGY-ASGDF 248
+ + E N D +HG GP+ + P G ++ A ++ G +
Sbjct: 127 EAAWPLYKRLETNE-DAGPDAPHHGDSGPVHLMNVPPKDPTGVALLDACEQAGIPRAKFN 185
Query: 249 NGANQI-GVNFAQVMV-DNGVRSSTPRMFLRDKYKQDNLKVQLNAHVMKLNIDPKTKRAL 306
G + G NF Q+ +G RSS+ ++ +Q+N + +L D +R
Sbjct: 186 TGTTVVNGANFFQINRRADGTRSSSSVSYIHPIVEQENFTLLTGLRARQLVFD-ADRRCT 244
Query: 307 SVQFKDTNTNEIKTVKAKKEIILTAGAIGSPQLLMLSGVGPKSHLDELGIETISDLR-VG 365
V D+ + A+ E++L+ GAI +P+LLMLSG+GP +HL E GIE + D VG
Sbjct: 245 GVDIVDSAFGHTHRLTARNEVVLSTGAIDTPKLLMLSGIGPAAHLAEHGIEVLVDSPGVG 304
Query: 366 YNLVHHVGANLKFSILDNGVSDNNGEIDEKGTYLEESNEGLSSMKGNMDEMLNDGRPGRS 425
+L H ++F + + + E G + + +GL D M++
Sbjct: 305 EHLQDHPEGVVQFE-AKQPMVAESTQWWEIGIFT-PTEDGLDR----PDLMMH------- 351
Query: 426 ILSNTFNALFSNNNKEEDKMPCGRRSIYARPTNLLPISRGRLVLRSADPFEYPKIHSNYL 485
+ ++ + N P P SRG + LRS D + P + Y
Sbjct: 352 -----YGSVPFDMNTLRHGYPTTENGFSLTPNVTHARSRGTVRLRSRDFRDKPMVDPRYF 406
Query: 486 --VMKQDIDVIIEGIRIIQKLTRTKALQKWDFQIDSTKMPECKHFEWDSNEYWECYIKTY 543
D+ V++ GIR +++ A+ +W P E ++E + YI+
Sbjct: 407 TDPEGHDMRVMVAGIRKAREIAAQPAMAEW---TGRELSPGV---EAQTDEELQDYIRKT 460
Query: 544 TLPENHPGGTCKMGPADDYSSVVDAQLRIHGVPNLRVMDASIFPTNINSNPIATIIMIAE 603
HP GT +MG +D S +D +LR+ GV LRV DAS+ P ++ NP T++MI E
Sbjct: 461 HNTVYHPVGTVRMGAVEDEMSPLDPELRVKGVTGLRVADASVMPEHVTVNPNITVMMIGE 520
Query: 604 KGADMVKESWR 614
+ AD+++ +
Sbjct: 521 RCADLIRSARA 531
>1ju2_A HydroxynitrIle lyase; flavin, GMC oxidoreductase, almond,
cyanogenesis; HET: NAG NDG FUC BMA MAN FAD; 1.47A
{Prunus dulcis} SCOP: c.3.1.2 d.16.1.1 PDB: 3gdp_A*
3gdn_A*
Length = 536
Score = 444 bits (1145), Expect = e-151
Identities = 121/558 (21%), Positives = 206/558 (36%), Gaps = 69/558 (12%)
Query: 68 RNRPLQEEYDFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGPDEPTVTSVPGFAASAVGT 127
+ L+ YD+V+VGGG +G +A L E +KVL+LE G +V
Sbjct: 19 TDLELEGSYDYVIVGGGTSGCPLAATLSEK--YKVLVLERGSLPTAYPNVLTADGFVYNL 76
Query: 128 HLDWKYKTERNKYACLSTGGICEWPRGKMLAGTGAMTGMMYTRSHPSIYDEWQRQGNPGW 187
+ KT ++ + RG++L GT + +Y R++ SIY W
Sbjct: 77 QQEDDGKTPVERFVS---EDGIDNVRGRVLGGTSIINAGVYARANTSIYSAS----GVDW 129
Query: 188 GFSDVLRYFIKSEHNLNRDQVDPEYHGYDGPLKVQRFSSYPPIGEDIIKAGKELGYASGD 247
V + + E Y + ++AG +
Sbjct: 130 DMDLVNQTYEWVEDT-------IVYKPNSQSWQ-------SVTKTAFLEAGVHPNH---G 172
Query: 248 FNGANQIGVNFAQVMVDNGVRSSTPRMFLRDKYKQDNLKVQLNAHVMKLNIDPKT-KRAL 306
F+ ++ G DN L +NL+V ++A V K+ A
Sbjct: 173 FSLDHEEGTRITGSTFDNKGTRHAADELLNKG-NSNNLRVGVHASVEKIIFSNAPGLTAT 231
Query: 307 SVQFKDTN-TNEIKTVKAKKEIILTAGAIGSPQLLMLSGVGPKSHLDELGIETISDLR-V 364
V ++D+N T V++K E+I++AG IG+PQLL+LSGVGP+S+L L I + V
Sbjct: 232 GVIYRDSNGTPHQAFVRSKGEVIVSAGTIGTPQLLLLSGVGPESYLSSLNIPVVLSHPYV 291
Query: 365 GYNLVHHVGANLKFSILDNGVSDNNGEIDEKGTYLEESNEGLSSMKGNMDEMLNDGRPGR 424
G L + + N + + ++ G ++
Sbjct: 292 GQFLHDNPRNFINILPP-NPIEPT-----------------IVTVLGISNDFYQCSFSSL 333
Query: 425 SILSNTFNALFSNNNKEEDKMPCGRRSIYARPTNLLPISRGRLVLR-SADPFEYPKIHSN 483
+ F S++ + S A P S G L L+ S++ P + N
Sbjct: 334 PFTTPPFGFFPSSSYPLPNSTFAHFASKVAGPL-----SYGSLTLKSSSNVRVSPNVKFN 388
Query: 484 YLVMKQDIDVIIEGIRIIQKLTRTKALQKW-------DFQIDSTKMPECKHFEWDSNEYW 536
Y D+ + G++ I +L T AL+ + + +P K + +
Sbjct: 389 YYSNLTDLSHCVSGMKKIGELLSTDALKPYKVEDLPGVEGFNILGIPLPKDQ--TDDAAF 446
Query: 537 ECYIKTYTLPENHPGGTCKMGPADDYSSVVDAQLRIHGVPNLRVMDASIFPTNINSNPIA 596
E + + H G C +G V+D R+ G+ LRV+D S FP S+P
Sbjct: 447 ETFCRESVASYWHYHGGCLVG------KVLDGDFRVTGINALRVVDGSTFPYTPASHPQG 500
Query: 597 TIIMIAEKGADMVKESWR 614
+M+ + +
Sbjct: 501 FYLMLGRYVGIKILQERS 518
>1kdg_A CDH, cellobiose dehydrogenase; GMC oxidoreductase, PHBH fold,
alpha/beta structure, rossman 6-hydroxylated FAD,
oxidoreductase; HET: NAG MAN 6FA EMT; 1.50A
{Phanerochaete chrysosporium} SCOP: c.3.1.2 d.16.1.1
PDB: 1naa_A*
Length = 546
Score = 395 bits (1018), Expect = e-131
Identities = 109/578 (18%), Positives = 199/578 (34%), Gaps = 76/578 (13%)
Query: 71 PLQEEYDFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGP--DEPTVTSVPGFAASAVGTH 128
YD+++VG G G + A RL E KVLLLE G + T + A++ G
Sbjct: 3 VSATPYDYIIVGAGPGGIIAADRLSEAGK-KVLLLERGGPSTKQTGGTYVAPWATSSGLT 61
Query: 129 ------LDWKYKTERNKY-ACLSTGGICEWPRGKMLAGTGAMTGMMYTRSHPSIYDEWQR 181
L T+ N + C G ++ G ++ G +Y + +
Sbjct: 62 KFDIPGLFESLFTDSNPFWWCKDI----TVFAGCLVGGGTSVNGALYWYPNDGDFS---- 113
Query: 182 QGNPGW--GFSDVLRYFIKSEHNLNRDQVDPEYHGYDGPLKVQRFSSYPPIGEDIIKAGK 239
+ GW +++ Y K L ++ DG +++ S+ + ++K
Sbjct: 114 -SSVGWPSSWTNHAPYTSKLSSRLP----STDHPSTDGQRYLEQ--SFNVV-SQLLKGQG 165
Query: 240 ELGYASGDFNGANQIGVNFAQVMVDNGVRSSTPRMFLRDKYKQDNLKVQLNAHVMKLNID 299
D ++ NG R+ +L+ + N + N V + +
Sbjct: 166 YNQATINDNPNYKDHVFGYSAFDFLNGKRAGPVATYLQTALARPNFTFKTNVMVSNVVRN 225
Query: 300 PKTKRALSVQFKDTNT--NEIKTVKAKKEIILTAGAIGSPQLLMLSGVGPKSHLDELGIE 357
+ L VQ D N V K +IL+AGA G+ ++L SG+GP + +
Sbjct: 226 --GSQILGVQTNDPTLGPNGFIPVTPKGRVILSAGAFGTSRILFQSGIGPTDMIQTVQSN 283
Query: 358 TISDLR-----------VGYNLVHHVGANLKFSILDNGVSDNNGEIDEKGT--------Y 398
+ VG N + NL F+ + D Y
Sbjct: 284 PTAAAALPPQNQWINLPVGMNAQDNPSINLVFTH--PSIDAYENWADVWSNPRPADAAQY 341
Query: 399 LEESNEGLSSM----KGNMDEMLNDGRPGRSI-LSNTFNALFSNNNKEEDKMPCGRRSIY 453
L + G+ + R + A N++ + ++Y
Sbjct: 342 L-ANQSGVFAGASPKLNFWRAYSGSDGFTRYAQGTVRPGAASVNSSLPYNASQIFTITVY 400
Query: 454 ARPTNLLPISRGRLVLRSADPFEYPKIHSNYLVMKQDIDVIIEGIRIIQKLTRTKALQKW 513
+ SRGR+ + +A + +LV D V+++ + + +
Sbjct: 401 L---STGIQSRGRIGIDAALR--GTVLTPPWLVNPVDKTVLLQALHDVVSNIGSIPGLTM 455
Query: 514 DFQIDSTKMPECKHFEWDSNEYWECYIKTYTLPENHPGGTCKMGPADDYSSVVDAQLRIH 573
P+ + E + T+ NH + +G S+VVD+ +++
Sbjct: 456 -IT------PD----VTQTLEEYVDAYDPATMNSNHWVSSTTIGS-SPQSAVVDSNVKVF 503
Query: 574 GVPNLRVMDASIFPTNINSNPIATIIMIAEKGADMVKE 611
G NL ++DA I P NP T++ AE+ A +
Sbjct: 504 GTNNLFIVDAGIIPHLPTGNPQGTLMSAAEQAAAKILA 541
>3t37_A Probable dehydrogenase; BET alpha beta fold, ADP binding,
oxidoreductase; HET: FAD; 2.19A {Mesorhizobium loti}
Length = 526
Score = 304 bits (781), Expect = 1e-96
Identities = 93/310 (30%), Positives = 141/310 (45%), Gaps = 23/310 (7%)
Query: 68 RNRPLQEEYDFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGP--DEPTVTSVP-GFAASA 124
D V+VGGG AG ++A RL E+P+ +VLL+EAG +P + P + A
Sbjct: 10 AKVEHAPNCDIVIVGGGSAGSLLAARLSEDPDSRVLLIEAGEEPTDPDI-WNPAAWPAL- 67
Query: 125 VGTHLDWKYKTERNKYACLSTGG-ICEWPRGKMLAGTGAMTGMMYTRSHPSIYDEW-QRQ 182
G DW Y+TE T G W RG+++ G+ + M Y R HPS + W
Sbjct: 68 QGRSYDWDYRTEAQAG----TAGRAHHWARGRLIGGSSCLHAMGYMRGHPSDFQAWVDAS 123
Query: 183 GNPGWGFSDVLRYFIKSEHNLNRDQVDPEYHGYDGPLKVQRFSSYP-PIGEDIIKAGKEL 241
G+ WG+ ++L F E + HG GPL + + P+ I+AG L
Sbjct: 124 GDRRWGWDELLPVFQAIEDH---PLGGDGIHGKGGPLPIHLPADEVSPLARAFIEAGASL 180
Query: 242 GYA-SGDFNGANQIGVNFAQVMVDNGVRSSTPRMFLRDKYKQ-DNLKVQLNAHVMKLNID 299
G N IGV + + +G R + +L + NL + + V +L ++
Sbjct: 181 GLPRLEGHNSGEMIGVTPNSLNIRDGRRVTAADAWLTKAVRGRKNLTILTGSRVRRLKLE 240
Query: 300 PKTKRALSVQFKDTNTNEIKTVKAKKEIILTAGAIGSPQLLMLSGVGPKSHLDELGIETI 359
+ S++ V A +I+L AGA+ SP LLM SG+GP LD G+ +
Sbjct: 241 --GNQVRSLEVVGRQ--GSAEVFAD-QIVLCAGALESPALLMRSGIGPHDVLDAAGVGCL 295
Query: 360 SDLR-VGYNL 368
D+ +G NL
Sbjct: 296 IDMPDIGRNL 305
Score = 159 bits (406), Expect = 1e-42
Identities = 40/156 (25%), Positives = 62/156 (39%), Gaps = 9/156 (5%)
Query: 456 PTNLLPISRGRLVLRSADPFEYPKIHSNYLVMKQDIDVIIEGIRIIQKLTRTKALQKWDF 515
P SRG + + + + I YL +D + + + + L W
Sbjct: 376 FGITHPTSRGSVRISGPELGDRLIIDPAYLQTGRDRERFRRALEASRTIGHRDELAGW-- 433
Query: 516 QIDSTKMPECKHFEWDSNEYWECYIKTYTLPENHPGGTCKMGPADDYSSVVDAQLRIHGV 575
+ E +S + +I + +HP GTC+MG D +VVDA LR+ +
Sbjct: 434 -----RERELLPGTPNSAAEMDDFIARSVITHHHPCGTCRMGK--DPDAVVDANLRLKAL 486
Query: 576 PNLRVMDASIFPTNINSNPIATIIMIAEKGADMVKE 611
NL V+DASI P A ++ IAE A
Sbjct: 487 DNLFVVDASIMPNLTAGPIHAAVLAIAETFARQYHH 522
>3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer,
GMC oxidoredu PHBH fold, rossmann domain,
oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes
ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A*
2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A*
3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A*
3fdy_A* ...
Length = 623
Score = 160 bits (405), Expect = 4e-42
Identities = 88/604 (14%), Positives = 175/604 (28%), Gaps = 91/604 (15%)
Query: 71 PLQEEYDFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGPDEPTVTSVPGFAASAVGTHLD 130
+ +YD V+VG G G A LV +KV + + G + + +
Sbjct: 42 GMDIKYDVVIVGSGPIGCTYARELVG-AGYKVAMFDIGEIDSGLKIGAHKKNTVEYQKNI 100
Query: 131 WKYKTERNKYACLSTGGICEWPRGKMLAGTGAMTGMMYTRSHPSIYDE-------WQRQG 183
K+ +S L+ T + R+ + +
Sbjct: 101 DKFVNVIQGQL-MSVSVPVNTLVVDTLSPTSWQASTFFVRNGSNPEQDPLRNLSGQAVTR 159
Query: 184 NPG-----WG-----FSDVLRY-FIKSEHNLNRDQVDPEYHGYDGPLKVQRFSSYPPIGE 232
G W F R +K + + + + D Y + + I
Sbjct: 160 VVGGMSTAWTCATPRFDREQRPLLVKDDADADDAEWDRLYTKAESYFQTGTDQFKESIRH 219
Query: 233 DIIKAGKELGYASGDFNGANQIGVNFAQVMVDNGVRSSTPRMFLRDKY------KQDNLK 286
+++ Y QI + A V S+ + ++
Sbjct: 220 NLVLNKLTEEYKGQ--RDFQQIPLA-ATRRSPTFVEWSSANTVFDLQNRPNTDAPEERFN 276
Query: 287 VQLNAHVMKLNIDPKTKRALSVQFKDTNTNEIKTVKAKKEIILTAGAIGSPQLLMLSGVG 346
+ ++ + S+ D + + +KA +LTAGA+ + QLL+ SG G
Sbjct: 277 LFPAVACERVVRNALNSEIESLHIHDLISGDRFEIKADV-YVLTAGAVHNTQLLVNSGFG 335
Query: 347 PKSHLDELGIETISDLRVGYNLVHHVGANLKFSILDNGVSDNNGEIDEKGTYLEESNEGL 406
+ + +G + + +
Sbjct: 336 QLGRPNPANPPELLPS-LGSYITEQSLVFCQTVMSTE----------------------- 371
Query: 407 SSMKGNMDEMLNDGRPGRSILSNTFNALFSNNNKEEDKMPCGRRSIYARPTNLLPISRGR 466
+ +M G PG S T+ S N + + + + LPI
Sbjct: 372 -LIDSVKSDMTIRGTPGELTYSVTYTPGASTNKHPDWWNEKVKNHMMQHQEDPLPIPFED 430
Query: 467 LVLRSADPFE----YPKIHSNYLVMKQDIDVIIEGIRIIQKLTRTKALQKWDFQI----- 517
+ F+ + + I+ I+ + K + ++
Sbjct: 431 PEPQVTTLFQPSHPWHTQIHRDAFSYGAVQQSIDSRLIVDWRFFGRTEPKEENKLWFSDK 490
Query: 518 --DSTKMPECK-HFEWDSNEYWECY----------------IKTYTLPE-------NHPG 551
D+ MP+ F + + + +LP+ H G
Sbjct: 491 ITDAYNMPQPTFDFRFPAGRTSKEAEDMMTDMCVMSAKIGGFLPGSLPQFMEPGLVLHLG 550
Query: 552 GTCKMGP-ADDYSSVVDAQLRIHGVPNLRVMDASIFPTNINSNPIATIIMIAEKGADMVK 610
GT +MG + + V+ R+ G NL + PT +NP T + +A K + +K
Sbjct: 551 GTHRMGFDEKEDNCCVNTDSRVFGFKNLFLGGCGNIPTAYGANPTLTAMSLAIKSCEYIK 610
Query: 611 ESWR 614
+++
Sbjct: 611 QNFT 614
>1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism,
oxidoreductase, atomic RESO; HET: FAD; 0.92A
{Streptomyces SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1b4v_A*
1n1p_A* 1n4u_A* 1n4v_A* 1mxt_A* 2gew_A* 1b8s_A* 3gyi_A*
1cc2_A* 3gyj_A* 1ijh_A* 1cbo_A* 3b3r_A* 3b6d_A* 3cnj_A*
Length = 504
Score = 92.0 bits (228), Expect = 8e-20
Identities = 55/315 (17%), Positives = 102/315 (32%), Gaps = 41/315 (13%)
Query: 74 EEYDFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGPDEPTVTSVPGFAASAVGTHLDWKY 133
VV+G G V A RL E + L+LE G + D +
Sbjct: 4 GYVPAVVIGTGYGAAVSALRLGE-AGVQTLMLEMGQLWNQPGPDGNIFCGM--LNPDKRS 60
Query: 134 KTERNKYAC-----------------------LSTGGICEWPRGKMLAGTGAMTGMMYTR 170
+N+ G+ + G + G M
Sbjct: 61 SWFKNRTEAPLGSFLWLDVVNRNIDPYAGVLDRVNYDQMSVYVGRGVGGGSLVNGGMAVE 120
Query: 171 SHPSIYDEWQRQGNPGWGFSDVLR-YFIKSEH----NLNRDQVDPEYHGYDGPLKVQRFS 225
S ++E P S++ YF ++ N + + Y + +
Sbjct: 121 PKRSYFEEIL----PRVDSSEMYDRYFPRANSMLRVNHIDTKWFEDTEWYKFARVSREQA 176
Query: 226 SYPPIGEDIIKAGKELGYASGDFNGANQIGVNFAQVMV-DNGVRSSTPRMFLRDKYKQDN 284
+G + + GY + G +V+ +N + S + +L
Sbjct: 177 GKAGLGTVFVPNVYDFGYMQREAAGEVPKSALATEVIYGNNHGKQSLDKTYLAAALGTGK 236
Query: 285 LKVQLNAHVMKLNIDPKTKRALSVQFKDTNTNEIKT-VKAKKEIILTAGAIGSPQLLMLS 343
+ +Q V + AL+V+ KDT+ + T + + + L AG++GS +LL+ +
Sbjct: 237 VTIQTLHQVKTIRQTKDGGYALTVEQKDTDGKLLATKEISCRYLFLGAGSLGSTELLVRA 296
Query: 344 ---GVGPKSHLDELG 355
G P + E+G
Sbjct: 297 RDTGTLPNLN-SEVG 310
Score = 84.3 bits (208), Expect = 2e-17
Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 7/65 (10%)
Query: 549 HPGGTCKMGPADDYSSVVDAQLRIHGVPNLRVMDASIFPTNINSNPIATIIMIAEKGAD- 607
HP G C +G D R+ G NL V D S+ P ++ NP TI +AE+ +
Sbjct: 442 HPLGGCVLG------KATDDYGRVAGYKNLYVTDGSLIPGSVGVNPFVTITALAERNVER 495
Query: 608 MVKES 612
++K+
Sbjct: 496 IIKQD 500
>1coy_A Cholesterol oxidase; oxidoreductase(oxygen receptor); HET: AND FAD;
1.80A {Brevibacterium sterolicum} SCOP: c.3.1.2 d.16.1.1
PDB: 3cox_A*
Length = 507
Score = 82.1 bits (202), Expect = 1e-16
Identities = 43/328 (13%), Positives = 93/328 (28%), Gaps = 54/328 (16%)
Query: 67 VRNRPLQEEYDFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGPDEPTVTSVPGFAASAV- 125
R + +V+G G G V A RL + ++E G T S +
Sbjct: 3 SRTLADGDRVPALVIGSGYGGAVAALRLTQ-AGIPTQIVEMGRSWDTPGSDGKIFCGMLN 61
Query: 126 ----GTHLDWKYKTERNKYACLSTGGICE---------------WPRGKMLAGTGAMTGM 166
L K + + + +G+ + G + G
Sbjct: 62 PDKRSMWLADKTDQPVSNFMGFGINKSIDRYVGVLDSERFSGIKVYQGRGVGGGSLVNGG 121
Query: 167 MYTRSHPSIYDEWQRQGNPGWGFSDVLR-YFIKSEHNLNRDQVDPEYHGYDGPLKVQRFS 225
M + ++E P +++ YF ++ V+ + +
Sbjct: 122 MAVTPKRNYFEEIL----PSVDSNEMYNKYFPRANTG---LGVNNIDQAWFESTE----- 169
Query: 226 SYPPIGEDIIKAGKELGYASGDFNGANQIGVNFAQVMVD--------------NGVRSST 271
+ K + G+ + + N + S
Sbjct: 170 -WYKFARTGRKTAQRSGFTTAFVPNVYDFEYMKKEAAGQVTKSGLGGEVIYGNNAGKKSL 228
Query: 272 PRMFLRDKYKQDNLKVQLNAHVMKLNIDPKTKRALSVQFKDTNTNEIKTVK-AKKEIILT 330
+ +L L + V K+ + +++++ D N + T +
Sbjct: 229 DKTYLAQAAATGKLTITTLHRVTKVAPATGSGYSVTMEQIDEQGNVVATKVVTADRVFFA 288
Query: 331 AGAIGSPQLLMLS---GVGPKSHLDELG 355
AG++G+ +LL+ G P ++G
Sbjct: 289 AGSVGTSKLLVSMKAQGHLPNLS-SQVG 315
Score = 76.7 bits (188), Expect = 6e-15
Identities = 19/67 (28%), Positives = 29/67 (43%), Gaps = 7/67 (10%)
Query: 549 HPGGTCKMGPADDYSSVVDAQLRIHGVPNLRVMDASIFPTNINSNPIATIIMIAEKGAD- 607
HP G + D R+ P L V+D S+ P N+ NP TI +AE+ D
Sbjct: 447 HPLGGVLLN------KATDNFGRLPEYPGLYVVDGSLVPGNVGVNPFVTITALAERNMDK 500
Query: 608 MVKESWR 614
++ +
Sbjct: 501 IISSDIQ 507
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 63.9 bits (155), Expect = 1e-10
Identities = 87/474 (18%), Positives = 154/474 (32%), Gaps = 160/474 (33%)
Query: 182 QGNPGWGFSDVLRYFIKSEHNLNRDQVDPEYHGYDGPLKVQRFSSYPPIGEDIIK-AGKE 240
QGN YF E L RD + +Y + D+IK + +
Sbjct: 163 QGNT-------DDYF--EE--L-RD----------------LYQTYHVLVGDLIKFSAET 194
Query: 241 LGYASGDFNGANQI---GVNFAQVMVDNGVRSSTPRMFLRDKYKQDNLK----------- 286
L A ++ G+N + + + S+TP +D L
Sbjct: 195 LSELIRTTLDAEKVFTQGLNILEWLEN---PSNTP--------DKDYLLSIPISCPLIGV 243
Query: 287 VQLNAHVM----KLNIDPKTKRALSVQFKDTNTNEIKTVKAKKEIILTAGAIGSPQLLML 342
+QL AH + L P R+ +K + ++TA AI
Sbjct: 244 IQL-AHYVVTAKLLGFTPGELRSY-----------LKGATGHSQGLVTAVAI-------- 283
Query: 343 SGVGPKSHLDELGIETISDL-RVGYNLVHHV--GANLKFSILDNGVSDNNGE-------- 391
+ + I+ L +G + +L SIL++ + +N G
Sbjct: 284 AETDSWESFFVSVRKAITVLFFIGVR-CYEAYPNTSLPPSILEDSLENNEGVPSPMLSIS 342
Query: 392 ---IDEKGTYLEESNEGLSSMKG------NMDEMLN-DGRPGRSI--LSNTFNALFSNNN 439
++ Y+ ++N L + K N + L G P +S+ L+ T + +
Sbjct: 343 NLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPP-QSLYGLNLTLRKAKAPSG 401
Query: 440 KEEDKMPCGRR--SIYARPTNLLPISRGRLVLRSADPFEYPKIHSNYL-----VMKQDI- 491
++ ++P R R LP+ ++ PF HS+ L ++ +D+
Sbjct: 402 LDQSRIPFSERKLKFSNR---FLPV--------AS-PF-----HSHLLVPASDLINKDLV 444
Query: 492 --DVIIEG--IRIIQKLTRTKALQKWDFQIDSTKMPECKHFEWDSNE--YWECYIKTYTL 545
+V I+I T + D ++ S + E + + WE T
Sbjct: 445 KNNVSFNAKDIQIPVYDTFDGS----DLRVLSGSISE-RIVDCIIRLPVKWE---TTTQF 496
Query: 546 PENH-----PGGTCKMGPADDYSSVVDAQLRIHGVPNLRVMDASIFPTNINSNP 594
H PGG +G + GV RV I ++ NP
Sbjct: 497 KATHILDFGPGGASGLGV------LTHRNKDGTGV---RV----IVAGTLDINP 537
Score = 41.6 bits (97), Expect = 0.001
Identities = 44/252 (17%), Positives = 71/252 (28%), Gaps = 107/252 (42%)
Query: 371 HVGANLKFSILDNGVSDNNGEI-----DEKGTYLEESNEGLSSMKGNMDEMLNDGRP--- 422
H FSILD V +N + EKG + E S+M + E + DG+
Sbjct: 1652 HFKDTYGFSILDI-VINNPVNLTIHFGGEKGKRI---RENYSAM---IFETIVDGKLKTE 1704
Query: 423 ------GRSILSNTFN--------------ALF-----------SNNNKEEDKMPCGRRS 451
S TF AL S D G S
Sbjct: 1705 KIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADATFAG-HS 1763
Query: 452 I--Y---ARPTNLLPIS--------RGRLVLRSADPFEYPKIHSNYLVM----------- 487
+ Y A +++ I RG + + E + SNY ++
Sbjct: 1764 LGEYAALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGR--SNYGMIAINPGRVAASF 1821
Query: 488 -KQDIDVIIEGI--------------------------RIIQKLTR---TKALQKWDFQI 517
++ + ++E + R + +T LQK I
Sbjct: 1822 SQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGDLRALDTVTNVLNFIKLQK----I 1877
Query: 518 DSTKMPECKHFE 529
D ++ + E
Sbjct: 1878 DIIELQKSLSLE 1889
Score = 32.3 bits (73), Expect = 0.53
Identities = 31/176 (17%), Positives = 50/176 (28%), Gaps = 50/176 (28%)
Query: 1 MIFNYLDPASSVMDQPTCSCDYQDTAYIARSCGSSLNVTLFMTLVDVMLRTQCDLADPC- 59
MIF + ++ + T+Y RS L+ T F TQ P
Sbjct: 1691 MIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQF---------TQ-----PAL 1736
Query: 60 ---GRASSNLVRNRPLQEEYDFVVVG---G------GVAG--------PVVA--GRLVEN 97
+A+ ++++ L D G G +A VV G ++
Sbjct: 1737 TLMEKAAFEDLKSKGLIPA-DATFAGHSLGEYAALASLADVMSIESLVEVVFYRGMTMQ- 1794
Query: 98 PNWKVLLLEAGPDEPTVTSVPGFAA---SAVGTHLDWKYKTERNKYACLSTGGICE 150
A P + S G A V + + TG + E
Sbjct: 1795 --------VAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVE 1842
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 54.5 bits (130), Expect = 1e-07
Identities = 74/492 (15%), Positives = 138/492 (28%), Gaps = 131/492 (26%)
Query: 175 IYDEWQRQGN-PGWGFSDVLRYFIKSEHNLNRD-QVDPEYHGYDGPLKVQRFSSYPPIGE 232
+ + + P S + R +I+ L D QV +Y+ V R Y
Sbjct: 94 LMSPIKTEQRQP----SMMTRMYIEQRDRLYNDNQVFAKYN-------VSRLQPY----L 138
Query: 233 DIIKAGKELGYASGDF-NGANQIG--VNFAQVMVDNGVRSSTP-RMF---LRDKYKQDNL 285
+ +A EL A +G G V + V+ ++F L++ + +
Sbjct: 139 KLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETV 198
Query: 286 KVQLNAHVMKLNIDPK-TKRALSVQFKDTNTNEIKTVKAKKEIILTAGAIGSPQLLMLSG 344
L + IDP T R+ + I+ + ++ + LL+L
Sbjct: 199 LEMLQK--LLYQIDPNWTSRSDHSSNIKLRIHSIQ--AELRRLLKSKPYENC--LLVLLN 252
Query: 345 VGPKSHLDELGIETISDLRVGYNLVHHVGANLKFSIL----DNGVSDNNGEIDEKGTYLE 400
V + NL IL V+D L+
Sbjct: 253 VQNAKAWNAF--------------------NLSCKILLTTRFKQVTDFLSAATTTHISLD 292
Query: 401 ESNEGLSSMKGNMDEMLNDGRPGRSILSNTFNALFSNN-NKEEDKMP------------- 446
+ L+ DE+ +L + +P
Sbjct: 293 HHSMTLTP-----DEVK---------------SLLLKYLDCRPQDLPREVLTTNPRRLSI 332
Query: 447 CGR--RSIYARPTNLLPISRGRLV------LRSADPFEYPKIHSNYLVMKQDIDV----- 493
R A N ++ +L L +P EY K+ V +
Sbjct: 333 IAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILL 392
Query: 494 -II-------EGIRIIQKLTRTKALQKWD----FQIDSTKMPECKHFEWDSNEYW--ECY 539
+I + + ++ KL + ++K I S + E NEY
Sbjct: 393 SLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLE---NEYALHRSI 449
Query: 540 IKTYTLPENHPGGTCKMGPADDYS--------SVVDAQLRIHGVP----NLRVMDASIFP 587
+ Y +P+ D Y ++ R+ + R ++ I
Sbjct: 450 VDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRH 509
Query: 588 TNINSNPIATII 599
+ N +I+
Sbjct: 510 DSTAWNASGSIL 521
>3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A
{Aeropyrum pernix} PDB: 3vqr_A*
Length = 448
Score = 47.5 bits (113), Expect = 9e-06
Identities = 18/47 (38%), Positives = 23/47 (48%)
Query: 63 SSNLVRNRPLQEEYDFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGP 109
SS LV +D+VVVG GV G A L VL+++AG
Sbjct: 11 SSGLVPRGSHMPRFDYVVVGAGVVGLAAAYYLKVWSGGSVLVVDAGH 57
>1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD BCN;
2.25A {Mycobacterium tuberculosis}
Length = 399
Score = 43.6 bits (102), Expect = 1e-04
Identities = 14/40 (35%), Positives = 22/40 (55%)
Query: 70 RPLQEEYDFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGP 109
+P+ +D VVG G G +A R+ + +VL+LE P
Sbjct: 2 QPMTARFDLFVVGSGFFGLTIAERVATQLDKRVLVLERRP 41
>3cgv_A Geranylgeranyl reductase related protein; NP_393992.1,
geranylgeranyl bacteriochlorophyll reductase- like FIXC
homolog; HET: MSE FAD UNL; 1.60A {Thermoplasma
acidophilum dsm 1728} PDB: 3oz2_A*
Length = 397
Score = 43.1 bits (102), Expect = 2e-04
Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Query: 74 EEYDFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGPDEPT 113
E YD +VVGGG G A + K L++E P+ +
Sbjct: 3 ETYDVLVVGGGPGGSTAARYAAKY-GLKTLMIEKRPEIGS 41
>3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase;
HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB:
3hdy_A* 3he3_A* 3mj4_A*
Length = 397
Score = 41.7 bits (97), Expect = 6e-04
Identities = 14/49 (28%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 61 RASSNLVRNRPLQEEYDFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGP 109
+N + + +D+++VG G AG V+A RL + +VL+++ P
Sbjct: 15 TEQTNTTNEQQESKGFDYLIVGAGFAGSVLAERLASS-GQRVLIVDRRP 62
>3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural
genomics, PSI-2, protein structure initiative; HET: ADP;
2.40A {Deinococcus radiodurans R1}
Length = 405
Score = 41.6 bits (96), Expect = 7e-04
Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 3/63 (4%)
Query: 73 QEEYDFVVVGGGVAGPVVAGRLVE-NPNWKVLLLEAG--PDEPTVTSVPGFAASAVGTHL 129
+E +D VV+G G G A L + P +LL+E G P+E T + +A
Sbjct: 34 EEAFDIVVIGAGRMGAACAFYLRQLAPGRSLLLVEEGGLPNEEGATILAPGVWTAQDIPA 93
Query: 130 DWK 132
+
Sbjct: 94 GQE 96
>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates,
flavoenzymes, nicotine degradation, oxidoreductase; HET:
FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB:
3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X*
3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A*
Length = 431
Score = 40.6 bits (95), Expect = 0.001
Identities = 17/32 (53%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Query: 76 YDFVVVGGGVAGPVVAGRLVENPNWKVLLLEA 107
YD +VVGGG +G + A R + N KVLLLE
Sbjct: 2 YDAIVVGGGFSG-LKAARDLTNAGKKVLLLEG 32
>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex,
oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis}
SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*
Length = 382
Score = 40.3 bits (95), Expect = 0.001
Identities = 16/60 (26%), Positives = 26/60 (43%), Gaps = 9/60 (15%)
Query: 68 RNRPLQEEYDFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGPDEPTVTSVPGFAASAVGT 127
R R ++ Y+ VV+GGG+ G +A L + N L E+G G ++
Sbjct: 10 RIRAMKRHYEAVVIGGGIIGSAIAYYLAKE-NKNTALFESGT--------MGGRTTSAAA 60
>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus}
Length = 512
Score = 40.3 bits (94), Expect = 0.002
Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 73 QEEYDFVVVGGGVAGPVVAGRLVENPNWKVLLLEAG 108
E +D +V+GGG G +A + +VLLLE
Sbjct: 5 PEVFDLIVIGGGPGGSTLASFVAMR-GHRVLLLERE 39
>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex,
biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis
thaliana} SCOP: c.3.1.6
Length = 284
Score = 39.7 bits (92), Expect = 0.002
Identities = 15/35 (42%), Positives = 20/35 (57%)
Query: 75 EYDFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGP 109
E D VVVG G AG A + +NPN +V ++E
Sbjct: 39 ETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSV 73
>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase,
inhibitor binding, rasagiline, enantioselectivity,
oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP:
c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A*
1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A*
2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A*
2v61_A* 2vrl_A* ...
Length = 520
Score = 40.2 bits (94), Expect = 0.002
Identities = 14/34 (41%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
Query: 74 EEYDFVVVGGGVAGPVVAGRLVENPNWKVLLLEA 107
+ D VVVGGG++G + A +L+ + V++LEA
Sbjct: 3 NKCDVVVVGGGISG-MAAAKLLHDSGLNVVVLEA 35
>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A
{Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A*
2yg7_A* 3rha_A*
Length = 453
Score = 40.1 bits (94), Expect = 0.002
Identities = 9/34 (26%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 74 EEYDFVVVGGGVAGPVVAGRLVENPNWKVLLLEA 107
+ D +VG G +G + A + V ++EA
Sbjct: 4 LQRDVAIVGAGPSG-LAAATALRKAGLSVAVIEA 36
>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein
structure initiative, northeast structural genomics
consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii}
Length = 421
Score = 40.2 bits (94), Expect = 0.002
Identities = 12/37 (32%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 73 QEEYDFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGP 109
+E+ D +V+G G AG V A + ++ +KV ++E
Sbjct: 3 REKVDVLVIGAGPAGTVAASLVNKS-GFKVKIVEKQK 38
>2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase
type II family, thiazole synthase, mitochondria DNA
repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} SCOP:
c.3.1.6 PDB: 3fpz_A*
Length = 326
Score = 39.8 bits (92), Expect = 0.002
Identities = 11/36 (30%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 75 EYDFVVVGGGVAGPVVAGRLVEN-PNWKVLLLEAGP 109
D ++VG G +G A + +N P+ KV ++E+
Sbjct: 65 VSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSV 100
>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT
structure initiative, northeast structural genomics
consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis}
Length = 369
Score = 39.8 bits (94), Expect = 0.002
Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Query: 74 EEYDFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGPDEPTVTS 116
+ D +V+G GV G +A L +VL+ EA T TS
Sbjct: 3 TDIDCIVIGAGVVGLAIARALAA-GGHEVLVAEAAEGIGTGTS 44
>3atr_A Conserved archaeal protein; saturating double bonds, archaeal
membrane precursor, like 2 geranylgeranylglyceryl
phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius}
PDB: 3atq_A*
Length = 453
Score = 39.8 bits (93), Expect = 0.002
Identities = 13/38 (34%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 73 QEEYDFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGPD 110
+ +YD +++GGG AG A +L K+LL+++ P
Sbjct: 4 ELKYDVLIIGGGFAGSSAAYQLSRR-GLKILLVDSKPW 40
>2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase,
lipopolysaccharide biosynthesi; HET: FAD; 2.0A
{Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB:
2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A*
Length = 384
Score = 39.7 bits (92), Expect = 0.002
Identities = 8/36 (22%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 74 EEYDFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGP 109
+ ++VG G +G V+ +L E +V +++
Sbjct: 2 KSKKILIVGAGFSGAVIGRQLAEK-GHQVHIIDQRD 36
>3utf_A UDP-galactopyranose mutase; nucleotide binding, flavin adenine
dinucleotide BIND isomerase; HET: FDA; 2.25A
{Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A*
3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A*
Length = 513
Score = 39.5 bits (91), Expect = 0.003
Identities = 8/34 (23%), Positives = 16/34 (47%)
Query: 76 YDFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGP 109
D +V+G G G A RL + +++++
Sbjct: 11 VDVLVIGAGPTGLGAAKRLNQIDGPSWMIVDSNE 44
>1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase,
isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP:
c.4.1.3 d.16.1.7
Length = 367
Score = 38.9 bits (90), Expect = 0.003
Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 76 YDFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGP 109
YD+++VG G+ G V A L + N KVL++E
Sbjct: 2 YDYIIVGSGLFGAVCANELKKL-NKKVLVIEKRN 34
>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol
biosynthesis, halogenation reaction, structural
genomics; HET: FAD; 2.20A {Streptomyces venezuelae}
Length = 591
Score = 38.4 bits (89), Expect = 0.007
Identities = 9/35 (25%), Positives = 13/35 (37%), Gaps = 1/35 (2%)
Query: 74 EEYDFVVVGGGVAGPVVAGRLVENPNWKVLLLEAG 108
++GGG AG V L + V + E
Sbjct: 22 TRSKVAIIGGGPAGSVAGLTLHKL-GHDVTIYERS 55
>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride
transfer mechanism, GR2-family, flavoenzyme, FAD
containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB:
2jb1_A* 2jb2_A* 2jb3_A*
Length = 489
Score = 37.2 bits (86), Expect = 0.014
Identities = 12/35 (34%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 73 QEEYDFVVVGGGVAGPVVAGRLVENPNWKVLLLEA 107
+ + VV+GGG AG + + ++ +KV +LEA
Sbjct: 9 KGSHSVVVLGGGPAG-LCSAFELQKAGYKVTVLEA 42
>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A
{Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A*
2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*
Length = 542
Score = 37.2 bits (87), Expect = 0.014
Identities = 15/49 (30%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
Query: 62 ASSNLVRNRPLQEEYDFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGPD 110
+ + R EE D +VVG G +G RL E V ++E D
Sbjct: 3 GQTTVDSRRQPPEEVDVLVVGAGFSGLYALYRLREL-GRSVHVIETAGD 50
>3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein;
HET: AHZ; 2.70A {Neurospora crassa}
Length = 344
Score = 37.0 bits (85), Expect = 0.015
Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 75 EYDFVVVGGGVAGPVVAGRLVE-NPNWKVLLLEAGP 109
E D V+VG G G A L P+ ++ ++EAG
Sbjct: 79 ETDIVIVGAGSCGLSAAYVLSTLRPDLRITIVEAGV 114
>2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme,
electron transfer, folate-ME enzyme, oxidoreductase;
HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia}
PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B*
3ada_B*
Length = 405
Score = 37.2 bits (87), Expect = 0.015
Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Query: 68 RNRPLQEEYDFVVVGGGVAGPVVAGRLVENPNWK-VLLLEAG 108
N ++ YD ++VGGG G A L +N V +LE G
Sbjct: 14 ANPEPKKSYDAIIVGGGGHGLATAYFLAKNHGITNVAVLEKG 55
>3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET:
FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A*
3nyf_A* 3sm8_A*
Length = 381
Score = 36.8 bits (86), Expect = 0.015
Identities = 12/47 (25%), Positives = 20/47 (42%), Gaps = 5/47 (10%)
Query: 70 RPLQEEYDFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGPDEPTVTS 116
E D++V+G G+AG L + +V++LE E
Sbjct: 4 HHHPIEADYLVIGAGIAGASTGYWLSAHG--RVVVLER---EAQPGY 45
>1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A
{Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A*
3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A*
3cnt_B* 1yy5_A* 1xpq_A*
Length = 516
Score = 36.7 bits (84), Expect = 0.020
Identities = 12/39 (30%), Positives = 19/39 (48%)
Query: 69 NRPLQEEYDFVVVGGGVAGPVVAGRLVENPNWKVLLLEA 107
N + +++G G+AG A L +N L+LEA
Sbjct: 2 NTVSPAKKKVIIIGAGIAGLKAASTLHQNGIQDCLVLEA 40
>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis
baeyer-villiger oxidation green CH monooxygenase,
oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP}
PDB: 3gwd_A* 3ucl_A*
Length = 540
Score = 36.8 bits (86), Expect = 0.021
Identities = 7/42 (16%), Positives = 11/42 (26%)
Query: 69 NRPLQEEYDFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGPD 110
D VV+G G G +L + +
Sbjct: 2 TAQTTHTVDAVVIGAGFGGIYAVHKLHHELGLTTVGFDKADG 43
>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD;
1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A*
3up4_A* 3up5_A*
Length = 545
Score = 36.4 bits (85), Expect = 0.024
Identities = 17/42 (40%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Query: 69 NRPLQEEYDFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGPD 110
NR D VV+G GV G A + + KVL +EAG D
Sbjct: 3 NRAKSPALDAVVIGAGVTGIYQAFLINQ-AGMKVLGIEAGED 43
>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase,
enantioselectivity, directed evolution variant; HET:
FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G*
Length = 495
Score = 36.5 bits (84), Expect = 0.025
Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Query: 62 ASSNLVRNRPLQEEYDFVVVGGGVAGPVVAGRLVENPNWKVLLLEA 107
+ + + +D +V+GGG G + A R + +K LLLEA
Sbjct: 26 SPPTNIEDTDKDGPWDVIVIGGGYCG-LTATRDLTVAGFKTLLLEA 70
>3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein,
structural genomics, PSI-2, protein structure
initiative; HET: FAD; 2.30A {Chromobacterium violaceum
atcc 12472}
Length = 381
Score = 36.3 bits (83), Expect = 0.025
Identities = 11/60 (18%), Positives = 23/60 (38%), Gaps = 1/60 (1%)
Query: 79 VVVGGGVAGPVVAGRLVE-NPNWKVLLLEAGPDEPTVTSVPGFAASAVGTHLDWKYKTER 137
+V+G G AG V A +L + P W + ++E ++ + + +
Sbjct: 4 LVIGAGPAGLVFASQLKQARPLWAIDIVEKNDEQEVLGWGVVLPGRPGQHPANPLSYLDA 63
>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding,
para-hydroxy-benzoate-hydroxylase fold (PHBH- fold),
monotopic membrane-binding domain; HET: FAD OMN TON;
2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5
Length = 504
Score = 36.3 bits (83), Expect = 0.027
Identities = 10/40 (25%), Positives = 14/40 (35%), Gaps = 1/40 (2%)
Query: 70 RPLQEEYDFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGP 109
V+G GV+G A +L V + EA
Sbjct: 8 DKHSSAKRVAVIGAGVSGLAAAYKLKI-HGLNVTVFEAEG 46
>3p1w_A Rabgdi protein; GDI RAB, malaria, structural genomics consortium,
SGC, trans PF10_0345, protein transport; 1.85A
{Plasmodium falciparum 3D7}
Length = 475
Score = 36.4 bits (83), Expect = 0.027
Identities = 16/83 (19%), Positives = 33/83 (39%), Gaps = 5/83 (6%)
Query: 73 QEEYDFVVVGGGVAGPVVAGRLVENPNWKVLLLEA----GPDEPTVTSVPGFAASAVGTH 128
E YD +++G G+ +++G L K+L+L+ G + ++ + +
Sbjct: 18 GEHYDVIILGTGLKECILSGLLSHY-GKKILVLDRNPYYGGETASLNLTNLYNTFKPKEN 76
Query: 129 LDWKYKTERNKYACLSTGGICEW 151
+ KY R+ L I
Sbjct: 77 IPSKYGENRHWNVDLIPKFILVG 99
>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD;
HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB:
2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A*
Length = 424
Score = 36.0 bits (83), Expect = 0.032
Identities = 7/38 (18%), Positives = 14/38 (36%)
Query: 72 LQEEYDFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGP 109
+ ++ ++G G AG L + +LE
Sbjct: 3 ISKDSRIAIIGAGPAGLAAGMYLEQAGFHDYTILERTD 40
>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction
mechanism, sustrat binding, oxidoreductase; HET: NAG FUC
PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2
d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A*
1tdo_A* 3kve_A* 4e0v_A*
Length = 498
Score = 36.0 bits (83), Expect = 0.035
Identities = 11/34 (32%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 74 EEYDFVVVGGGVAGPVVAGRLVENPNWKVLLLEA 107
V+VG G+AG + A ++ +V +LEA
Sbjct: 32 NPKHVVIVGAGMAG-LSAAYVLAGAGHQVTVLEA 64
>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM
FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3
c.3.1.4 d.168.1.1
Length = 566
Score = 35.8 bits (83), Expect = 0.039
Identities = 10/36 (27%), Positives = 16/36 (44%), Gaps = 1/36 (2%)
Query: 74 EEYDFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGP 109
E +VVG G AG + + V+L++ P
Sbjct: 120 ETTQVLVVGAGSAGFNASLAAKKA-GANVILVDKAP 154
>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome,
mesaconate, oxidoreductase; HET: HEM FAD; 1.50A
{Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4
d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A*
1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A*
1q9i_A* 1lj1_A*
Length = 571
Score = 35.8 bits (83), Expect = 0.045
Identities = 13/47 (27%), Positives = 20/47 (42%), Gaps = 1/47 (2%)
Query: 60 GRASSNLVRNRPLQEEYDFVVVGGGVAGPVVAGRLVENPNWKVLLLE 106
++ + D VVVG G AG A ++ KV+L+E
Sbjct: 111 DKSERQAALASAPHDTVDVVVVGSGGAGFSAAISATDS-GAKVILIE 156
>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD;
1.75A {Pseudomonas aeruginosa}
Length = 399
Score = 35.3 bits (82), Expect = 0.052
Identities = 9/52 (17%), Positives = 21/52 (40%), Gaps = 1/52 (1%)
Query: 74 EEYDFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGPDEPTVTSVPGFAASAV 125
D ++ G G+ G ++A L +V+++E E + + +
Sbjct: 5 NHIDVLINGCGIGGAMLAYLLGRQ-GHRVVVVEQARRERAINGADLLKPAGI 55
>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis,
chlorophyll biosynthesis, oxidoreductase, HAEM
biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A
{Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A*
Length = 478
Score = 35.0 bits (80), Expect = 0.065
Identities = 13/42 (30%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Query: 68 RNRPLQEEYDFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGP 109
+ P + VVGGG++G VA L +LLE+
Sbjct: 9 HHMPRTTGMNVAVVGGGISGLAVAHHLRSRG-TDAVLLESSA 49
>4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine
dinucleotide, isomerase; HET: FAD UDP; 2.25A
{Trypanosoma cruzi} PDB: 4dsh_A*
Length = 484
Score = 34.8 bits (79), Expect = 0.076
Identities = 10/37 (27%), Positives = 12/37 (32%)
Query: 73 QEEYDFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGP 109
V++G G G A RL E L E
Sbjct: 7 LLTPKIVIIGAGPTGLGAAVRLTELGYKNWHLYECND 43
>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome,
transcription, LSD1, alternative splicing, chromatin
regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens}
SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A*
3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A*
2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A
Length = 662
Score = 34.9 bits (79), Expect = 0.087
Identities = 12/41 (29%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 67 VRNRPLQEEYDFVVVGGGVAGPVVAGRLVENPNWKVLLLEA 107
++ P ++ +++G GV+G + A R +++ V LLEA
Sbjct: 99 IKPLPTKKTGKVIIIGSGVSG-LAAARQLQSFGMDVTLLEA 138
>3da1_A Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9KDW6 X-RAY,
structural genomics, PSI-2, protein structure
initiative; HET: FAD; 2.70A {Bacillus halodurans}
Length = 561
Score = 34.6 bits (80), Expect = 0.099
Identities = 12/53 (22%), Positives = 23/53 (43%), Gaps = 13/53 (24%)
Query: 64 SNLVRNRPLQ----EEYDFVVVGGGVAGPVVA----GRLVENPNWKVLLLEAG 108
S R++ + ++ D +V+GGG+ G +A R + L+E
Sbjct: 3 SAKKRDKCIGEMSEKQLDLLVIGGGITGAGIALDAQVR-----GIQTGLVEMN 50
>2rgh_A Alpha-glycerophosphate oxidase; flavoprotein oxidase,
oxidoreductase; HET: FAD; 2.30A {Streptococcus SP} PDB:
2rgo_A*
Length = 571
Score = 34.6 bits (80), Expect = 0.11
Identities = 16/53 (30%), Positives = 22/53 (41%), Gaps = 13/53 (24%)
Query: 64 SNLVRNRPLQ----EEYDFVVVGGGVAGPVVA----GRLVENPNWKVLLLEAG 108
SN R +Q EE D +++GGG+ G VA K L+E
Sbjct: 17 SNKTRQDSIQKMQQEELDLLIIGGGITGAGVAVQAAAS-----GIKTGLIEMQ 64
>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex,
oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus
horikoshii}
Length = 382
Score = 34.1 bits (79), Expect = 0.11
Identities = 12/37 (32%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 72 LQEEYDFVVVGGGVAGPVVAGRLVENPNWKVLLLEAG 108
L E+ + VV+GGG+ G +A L + +V ++E
Sbjct: 2 LPEKSEIVVIGGGIVGVTIAHELAKR-GEEVTVIEKR 37
>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate
porphyria disease, VP oxidoreductase-oxidoreductase
inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens}
Length = 477
Score = 34.3 bits (78), Expect = 0.12
Identities = 11/32 (34%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Query: 79 VVVGGGVAGPVVAGRLVE-NPNWKVLLLEAGP 109
VV+GGG++G + L KV+L+E+
Sbjct: 6 VVLGGGISGLAASYHLSRAPCPPKVVLVESSE 37
>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid,
amadoriase, deglycation, fructosamine oxidase; HET: MSE
FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A*
Length = 438
Score = 34.1 bits (78), Expect = 0.13
Identities = 9/38 (23%), Positives = 15/38 (39%)
Query: 72 LQEEYDFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGP 109
+ + ++VG G G A L V +L+ P
Sbjct: 3 VTKSSSLLIVGAGTWGTSTALHLARRGYTNVTVLDPYP 40
>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm,
FAD, flavoprotein, oxidoreductase, porphyrin
biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis}
Length = 470
Score = 34.2 bits (78), Expect = 0.13
Identities = 11/42 (26%), Positives = 20/42 (47%), Gaps = 5/42 (11%)
Query: 73 QEEYDFVVVGGGVAGPVVAGRLV-----ENPNWKVLLLEAGP 109
+ V++GGG+ G A + +N ++ L+EA P
Sbjct: 3 DGKKHVVIIGGGITGLAAAFYMEKEIKEKNLPLELTLVEASP 44
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A
{Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19
c.37.1.19
Length = 780
Score = 34.1 bits (79), Expect = 0.14
Identities = 12/23 (52%), Positives = 14/23 (60%), Gaps = 2/23 (8%)
Query: 342 LSGVGPKS--HLDELGIETISDL 362
GVGP L +LGIET+ DL
Sbjct: 120 AKGVGPNRKKKLKKLGIETLRDL 142
>3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for
structural genomics, JCSG, protein structure INI PSI-2;
HET: FAD; 2.06A {Exiguobacterium sibiricum}
Length = 475
Score = 34.2 bits (78), Expect = 0.14
Identities = 13/35 (37%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 76 YDFVVVGGGVAGPVVAGRLVEN-PNWKVLLLEAGP 109
V+VGGG+ G A P+ + LLEAG
Sbjct: 5 KRLVIVGGGITGLAAAYYAERAFPDLNITLLEAGE 39
>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX),
oxidative demethylation of N-methyl-L-tryptophan, FAD,
flavoenzyme; HET: FAD; 3.2A {Escherichia coli}
Length = 372
Score = 33.9 bits (78), Expect = 0.15
Identities = 8/35 (22%), Positives = 14/35 (40%), Gaps = 1/35 (2%)
Query: 75 EYDFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGP 109
+YD +++G G G VL+ +A
Sbjct: 2 KYDLIIIGSGSVGAAAGYYATRA-GLNVLMTDAHM 35
>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin
regulator, histone inhibitor binding, methylation,
nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A
{Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A*
2xas_A* 2com_A
Length = 852
Score = 34.2 bits (77), Expect = 0.15
Identities = 12/37 (32%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 71 PLQEEYDFVVVGGGVAGPVVAGRLVENPNWKVLLLEA 107
P ++ +++G GV+G + A R +++ V LLEA
Sbjct: 274 PTKKTGKVIIIGSGVSG-LAAARQLQSFGMDVTLLEA 309
>1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing
protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium
toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A*
1c0k_A*
Length = 363
Score = 33.9 bits (77), Expect = 0.16
Identities = 25/139 (17%), Positives = 40/139 (28%), Gaps = 14/139 (10%)
Query: 77 DFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGPDEPTVTSVPGFAASAVGTHLDWKYKTE 136
VV+G GV G A L + V +L E +S + A + T+
Sbjct: 8 RVVVLGSGVIGLSSALILARK-GYSVHILARDLPEDV-SSQTFASPWAGANWTPFMTLTD 65
Query: 137 RNKYACLSTGGICEWPRGKMLAGTGAMTGMMYTRSHPSIYDEWQRQGNPGWGFSDVLRYF 196
+ A +W L TG + + G G + D+ +
Sbjct: 66 GPRQAKWEESTFKKWVE---LVPTGHAMWL-----KGTRRFAQNEDGLLGHWYKDITPNY 117
Query: 197 IKSEHNLNRDQVDPEYHGY 215
L + P G
Sbjct: 118 ----RPLPSSECPPGAIGV 132
>2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate
dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A
{Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A*
Length = 501
Score = 33.7 bits (78), Expect = 0.17
Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 9/39 (23%)
Query: 74 EEYDFVVVGGGVAGPVVA----GRLVENPNWKVLLLEAG 108
E D +V+GGG+ G +A GR VL+LEA
Sbjct: 2 ETKDLIVIGGGINGAGIAADAAGR-----GLSVLMLEAQ 35
>1jnr_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A
{Archaeoglobus fulgidus dsm 4304} SCOP: a.7.3.1 c.3.1.4
d.168.1.1 PDB: 1jnz_A* 2fjb_A* 2fja_A* 2fjd_A* 2fje_A*
Length = 643
Score = 34.0 bits (78), Expect = 0.17
Identities = 12/52 (23%), Positives = 18/52 (34%), Gaps = 3/52 (5%)
Query: 58 PCGRASSNLVRNRPLQEEYDFVVVGGGVAGP---VVAGRLVENPNWKVLLLE 106
P E D +++GGG +G A + KV L+E
Sbjct: 5 PKKYELYKADEVPTEVVETDILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVE 56
>1jx4_A DNA polymerase IV (family Y); protein-DNA complex, Y-family,
transferase-D complex; HET: DNA MSE ADI; 1.70A
{Sulfolobus solfataricus} SCOP: d.240.1.1 e.8.1.7 PDB:
1jxl_A* 1n48_A* 1n56_A* 1ryr_A* 1rys_A* 1s0m_A* 1s0n_A*
1s0o_A* 1s10_A* 1s97_A* 1s9f_A* 2ia6_A* 2ibk_A* 2r8g_A*
2r8h_A* 2r8i_A* 2rdj_A* 3fds_A* 3m9m_B* 3m9n_B* ...
Length = 352
Score = 33.3 bits (77), Expect = 0.19
Identities = 7/24 (29%), Positives = 12/24 (50%), Gaps = 2/24 (8%)
Query: 342 LSGVGPKS--HLDELGIETISDLR 363
+ G+G + L +LGI + D
Sbjct: 183 VPGIGNITAEKLKKLGINKLVDTL 206
>4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase,
dehydogenase, steroid catabolism; HET: FAD; 1.60A
{Rhodococcus jostii} PDB: 4at2_A*
Length = 510
Score = 33.8 bits (78), Expect = 0.19
Identities = 12/36 (33%), Positives = 15/36 (41%), Gaps = 1/36 (2%)
Query: 74 EEYDFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGP 109
E D VV G G+AG + VL+LE
Sbjct: 40 YEADVVVAGYGIAGVAASIEAARA-GADVLVLERTS 74
>3osn_A DNA polymerase IOTA; hoogsteen base PAIR, protein-DNA complex,
Y-family DNA polym translesion synthesis, nucleoside
triphosphate; HET: DNA DOC 6OG TTP; 1.90A {Homo sapiens}
PDB: 2dpj_A* 2fll_A* 2fln_A* 2flp_A* 3epg_A* 3epi_A*
2dpi_A* 3g6v_A* 3g6y_A* 3g6x_A* 3gv7_B* 3gv8_B* 3ngd_A*
3gv5_B* 3q8p_B* 3q8q_B* 3q8r_B* 3q8s_B* 3h4d_A* 3h4b_A*
...
Length = 420
Score = 33.5 bits (77), Expect = 0.20
Identities = 9/29 (31%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
Query: 337 PQLLMLSGVGPKS--HLDELGIETISDLR 363
+ + G+G K+ L+ LGI ++ DL+
Sbjct: 234 NHIKEIPGIGYKTAKCLEALGINSVRDLQ 262
>3gyx_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A
{Desulfovibrio gigas}
Length = 662
Score = 33.4 bits (76), Expect = 0.22
Identities = 11/37 (29%), Positives = 17/37 (45%), Gaps = 5/37 (13%)
Query: 75 EYDFVVVGGGVAGPVVAGRLVE-----NPNWKVLLLE 106
D ++VGGG+ A V P K+LL++
Sbjct: 22 SVDLLMVGGGMGNCGAAFEAVRWADKYAPEAKILLVD 58
>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET:
FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A*
2q6u_A*
Length = 397
Score = 33.2 bits (76), Expect = 0.23
Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Query: 72 LQEEYDFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGP 109
+ E YD VVVGGG G A ++ E +VL+LE
Sbjct: 1 MTESYDVVVVGGGPVGLATAWQVAER-GHRVLVLERHT 37
>1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD biosynthesis, FAD,
oxidoreductase; 2.20A {Escherichia coli} SCOP: a.7.3.1
c.3.1.4 d.168.1.1 PDB: 1knr_A* 1knp_A*
Length = 540
Score = 33.4 bits (77), Expect = 0.23
Identities = 12/37 (32%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Query: 73 QEEYDFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGP 109
+ D +++G G AG +A RL +V++L GP
Sbjct: 6 EHSCDVLIIGSGAAGLSLALRLA--DQHQVIVLSKGP 40
>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD
NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A*
4aos_A* 4ap1_A*
Length = 549
Score = 33.3 bits (77), Expect = 0.25
Identities = 13/37 (35%), Positives = 14/37 (37%), Gaps = 1/37 (2%)
Query: 74 EEYDFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGPD 110
YD VVVG G+AG R V EA
Sbjct: 20 TSYDVVVVGAGIAGLYAIHRFRSQ-GLTVRAFEAASG 55
>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG
FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8
d.58.1.6 PDB: 2gmj_A*
Length = 584
Score = 33.2 bits (76), Expect = 0.25
Identities = 14/41 (34%), Positives = 18/41 (43%), Gaps = 5/41 (12%)
Query: 75 EYDFVVVGGGVAGPVVAGRL-----VENPNWKVLLLEAGPD 110
E D V+VG G AG A RL + +V L+E
Sbjct: 35 EADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAH 75
>3bq0_A POL IV, DBH, DNA polymerase IV; Y-family, lesion bypass; HET: DNA;
2.60A {Sulfolobus acidocaldarius} SCOP: d.240.1.1
e.8.1.7 PDB: 3bq1_A* 3bq2_A* 1k1q_A 1k1s_A
Length = 354
Score = 32.9 bits (76), Expect = 0.26
Identities = 8/24 (33%), Positives = 14/24 (58%), Gaps = 2/24 (8%)
Query: 342 LSGVGPKS--HLDELGIETISDLR 363
+ G+G L+ELGI+ + D+
Sbjct: 184 IPGIGSVLARRLNELGIQKLRDIL 207
>1im4_A DBH; DNA polymerase PALM, thumb, fingers, helix-hairpin-helix,
fidelity, processivity, transferase; 2.30A {Sulfolobus
solfataricus} SCOP: e.8.1.7
Length = 221
Score = 32.5 bits (75), Expect = 0.26
Identities = 8/24 (33%), Positives = 14/24 (58%), Gaps = 2/24 (8%)
Query: 342 LSGVGPKS--HLDELGIETISDLR 363
+ G+G L+ELGI+ + D+
Sbjct: 189 IPGIGSVLARRLNELGIQKLRDIL 212
>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide
oxidoreductase class I, rhodan coenzyme A, flavin
adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus
anthracis} PDB: 3icr_A* 3ict_A*
Length = 588
Score = 33.3 bits (77), Expect = 0.27
Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 78 FVVVGGGVAGPVVAGRLV-ENPNWKVLLLEAGPD 110
VVVGG G VA RL + +++++E G
Sbjct: 39 IVVVGGVAGGASVAARLRRLSEEDEIIMVERGEY 72
>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A,
flavin adenine dinucleotide, selenomethionine, F
flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis
str} PDB: 3cgc_A* 3cgd_A* 3cge_A*
Length = 480
Score = 32.9 bits (76), Expect = 0.29
Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 78 FVVVGGGVAGPVVAGRLV-ENPNWKVLLLEAGPD 110
+V++GG AG A ++V + N V+ LE G
Sbjct: 39 YVIIGGDAAGMSAAMQIVRNDENANVVTLEKGEI 72
>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural
genomi research consortium, nysgrc; HET: FDA; 2.51A
{Sinorhizobium meliloti}
Length = 417
Score = 32.9 bits (76), Expect = 0.30
Identities = 12/48 (25%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Query: 62 ASSNLVRNRPLQEEYDFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGP 109
+ NL + E+ D V++G G AG + A + +VL+++
Sbjct: 14 GTENLYFQSMVAEKQDVVIIGAGAAGMMCAIEAGKR-GRRVLVIDHAR 60
>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA,
persulfide reductase, rhodanese; HET: COA FAD; 1.99A
{Shewanella loihica} PDB: 3nta_A* 3nt6_A*
Length = 565
Score = 33.0 bits (76), Expect = 0.34
Identities = 7/33 (21%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
Query: 79 VVVGGGVAGPVVAGRLV-ENPNWKVLLLEAGPD 110
+++GG G A R + ++++ E G
Sbjct: 5 LIIGGVAGGASAAARARRLSETAEIIMFERGEY 37
>1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase,
oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays}
SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A*
1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A*
Length = 472
Score = 32.9 bits (75), Expect = 0.35
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 76 YDFVVVGGGVAGPVVAGRLVENPNWKVLLLEA 107
+VVG G++G A RL E +L+LEA
Sbjct: 5 PRVIVVGAGMSGISAAKRLSEAGITDLLILEA 36
>3gqc_A DNA repair protein REV1; protein-DNA complex, DNA damage, DNA
repair, DNA synthesis, binding, magnesium,
metal-binding; HET: DNA DOC DCP; 2.50A {Homo sapiens}
Length = 504
Score = 32.9 bits (75), Expect = 0.35
Identities = 11/24 (45%), Positives = 13/24 (54%), Gaps = 2/24 (8%)
Query: 342 LSGVGPKS--HLDELGIETISDLR 363
L GVG L LGI+T DL+
Sbjct: 320 LPGVGHSMESKLASLGIKTCGDLQ 343
>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase;
structural genomics, PSI-2, protein structur initiative;
2.30A {Desulfovibrio vulgaris}
Length = 472
Score = 32.9 bits (76), Expect = 0.36
Identities = 9/33 (27%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
Query: 79 VVVGGGVAGPVVAGRLV-ENPNWKVLLLEAGPD 110
VV+G GP A R +P V +++
Sbjct: 7 VVIGAVALGPKAACRFKRLDPEAHVTMIDQASR 39
>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase,
structural genomics structure initiative; 2.75A
{Pyrococcus horikoshii}
Length = 449
Score = 32.5 bits (75), Expect = 0.39
Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 79 VVVGGGVAGPVVAGRLV-ENPNWKVLLLEAGPD 110
V++GGG AG A R+ P W V + EA
Sbjct: 7 VIIGGGAAGMSAASRVKRLKPEWDVKVFEATEW 39
>1yqz_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.54A
{Staphylococcus aureus}
Length = 438
Score = 32.5 bits (75), Expect = 0.39
Identities = 8/33 (24%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
Query: 79 VVVGGGVAGPVVAGRLV-ENPNWKVLLLEAGPD 110
VVVG G A ++ + +++ E D
Sbjct: 5 VVVGAVAGGATCASQIRRLDKESDIIIFEKDRD 37
>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD;
2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4
d.168.1.1 PDB: 1d4e_A* 1d4c_A*
Length = 572
Score = 32.4 bits (74), Expect = 0.45
Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 74 EEYDFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGP 109
E D V++G G AG A + KV+LLE P
Sbjct: 125 ETTDVVIIGSGGAGLAAAVSARDA-GAKVILLEKEP 159
>1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution,
hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3
d.16.1.6 PDB: 1lv0_A* 1gnd_A
Length = 433
Score = 32.1 bits (72), Expect = 0.52
Identities = 13/38 (34%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 72 LQEEYDFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGP 109
+ EEYD +V+G G+ +++G + N KVL ++ P
Sbjct: 3 MDEEYDVIVLGTGLTECILSGIMSVN-GKKVLHMDRNP 39
>1t94_A Polymerase (DNA directed) kappa; replication, DNA repair, Y-family
DNA polymerase, translesion DNA synthesis, lesion
bypass; 2.40A {Homo sapiens} SCOP: d.240.1.1 e.8.1.7
PDB: 2oh2_A* 2w7o_A* 2w7p_A* 3hed_A* 3in5_A*
Length = 459
Score = 31.8 bits (72), Expect = 0.66
Identities = 9/24 (37%), Positives = 14/24 (58%), Gaps = 2/24 (8%)
Query: 342 LSGVGPKS--HLDELGIETISDLR 363
+SG+G + L LGI T ++L
Sbjct: 287 VSGIGKVTEKMLKALGIITCTELY 310
>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural
genomics, PSI-2, protein structure initiative; HET: FAD;
2.60A {Enterococcus faecalis}
Length = 452
Score = 31.7 bits (73), Expect = 0.68
Identities = 7/34 (20%), Positives = 14/34 (41%), Gaps = 1/34 (2%)
Query: 78 FVVVGGGVAGPVVAGRLV-ENPNWKVLLLEAGPD 110
V++G AG A + P ++ L++
Sbjct: 5 IVIIGASFAGISAAIASRKKYPQAEISLIDKQAT 38
>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor
2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus
SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A*
1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A*
3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A*
1l9d_A* 1zov_A*
Length = 389
Score = 31.9 bits (73), Expect = 0.69
Identities = 11/35 (31%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 74 EEYDFVVVGGGVAGPVVAGRLVENPNWKVLLLEAG 108
+D +VVG G G +L + K LL++A
Sbjct: 2 THFDVIVVGAGSMGMAAGYQLAKQ-GVKTLLVDAF 35
>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A
{Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A*
1f8w_A*
Length = 447
Score = 31.7 bits (73), Expect = 0.73
Identities = 7/33 (21%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
Query: 79 VVVGGGVAGPVVAGRLV-ENPNWKVLLLEAGPD 110
+V+G G L+ +P+ ++ E G
Sbjct: 4 IVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDF 36
>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A
{Lactobacillus sanfranciscensis}
Length = 452
Score = 31.7 bits (73), Expect = 0.74
Identities = 8/33 (24%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
Query: 79 VVVGGGVAGPVVAGRLV-ENPNWKVLLLEAGPD 110
+VVG AG + + ++P+ V E +
Sbjct: 4 IVVGCTHAGTFAVKQTIADHPDADVTAYEMNDN 36
>1fcd_A Flavocytochrome C sulfide dehydrogenase (flavin- binding subunit);
electron transport(flavocytochrome); HET: FAD HEM; 2.53A
{Allochromatium vinosum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Length = 401
Score = 31.7 bits (72), Expect = 0.74
Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 79 VVVGGGVAGPVVAGRLVE-NPNWKVLLLEAGPD 110
VVVGGG G A + +P+ +V L+E D
Sbjct: 6 VVVGGGTGGATAAKYIKLADPSIEVTLIEPNTD 38
>2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase,
geranylgeranylation, vesicular transport, protein
transport; HET: GDP GER; 1.48A {Saccharomyces
cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G*
3cpi_G 3cph_G 3cpj_G*
Length = 453
Score = 31.8 bits (71), Expect = 0.81
Identities = 10/39 (25%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 71 PLQEEYDFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGP 109
+ +YD +V+G G+ +++G L + KVL ++
Sbjct: 7 TIDTDYDVIVLGTGITECILSGLLSVD-GKKVLHIDKQD 44
>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex,
rossmann fold, HO pyridine nucleotide disulfide
oxidoreductase, electron TRAN oxidoreductase; HET: FAD;
2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A*
2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*
Length = 519
Score = 31.4 bits (72), Expect = 0.88
Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Query: 62 ASSNLVRNRPLQEEYDFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGPDEPTVTS 116
+ N + P +YD +++GGG G + A + KV++L+ P T
Sbjct: 19 SHMNGPEDLPKSYDYDLIIIGGGSGG-LAAAKEAAQYGKKVMVLDFVTPTPLGTR 72
>4a5v_A MIC4, micronemal protein 4; adhesion; NMR {Toxoplasma gondii}
Length = 161
Score = 30.6 bits (68), Expect = 0.92
Identities = 10/60 (16%), Positives = 20/60 (33%), Gaps = 2/60 (3%)
Query: 520 TKMPECKHFEWDSNEYWECYIKTYTLPENHPGGTCKMGPADDYSSVVDAQLRIHGVPNLR 579
+ C HF ++ + C++K G K S + + G P++
Sbjct: 41 KAVDGCTHFTYNDDSKM-CHVKEGKPDLYDLTG-GKTASRSCDRSCFEQHVSYEGAPDVM 98
>1yvv_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4,
X-RAY, structure, PSI, protein structure initiative;
HET: FAD; 2.50A {Pseudomonas syringae} PDB: 3kkj_A*
Length = 336
Score = 31.2 bits (69), Expect = 1.1
Identities = 8/32 (25%), Positives = 13/32 (40%), Gaps = 1/32 (3%)
Query: 77 DFVVVGGGVAGPVVAGRLVENPNWKVLLLEAG 108
++G G+AG A L +V L +
Sbjct: 4 PIAIIGTGIAGLSAAQALTAA-GHQVHLFDKS 34
>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2,
protein structure initiative, midwest center for
structural genomics, MCSG; HET: FAD; 1.84A {Bacillus
cereus} SCOP: c.3.1.8 e.74.1.1
Length = 447
Score = 31.0 bits (71), Expect = 1.3
Identities = 14/51 (27%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
Query: 59 CGRASSNLVRNRPLQEEYDFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGP 109
+ + + YD +V+GGG +G + A E VLLL+ G
Sbjct: 10 GVDLGTENLYFQSNAMHYDVIVIGGGPSGLMAAIGAAEE-GANVLLLDKGN 59
>2weu_A Tryptophan 5-halogenase; regioselectivity, antifungal protei; HET:
TRP; 1.70A {Streptomyces rugosporus} PDB: 2wet_A*
2wes_A*
Length = 511
Score = 30.8 bits (68), Expect = 1.3
Identities = 19/119 (15%), Positives = 35/119 (29%), Gaps = 9/119 (7%)
Query: 79 VVVGGGVAGPVVAGRLVE--NPNWKVLLLEAGPDEPTVTSVPGFAASAVGTHLDWKYKTE 136
V+VGGG AG + A L + V L+E+ + + ++
Sbjct: 6 VIVGGGTAGWMTASYLKAAFDDRIDVTLVES-GNVRRIGVGEATFSTVRHFFDYLGLDER 64
Query: 137 ---RNKYACLSTGGICE-WPRGKMLAGTGAMTGMMYTRSHPSIYDEWQRQGNPGWGFSD 191
G E W + + ++ + W G+ FS+
Sbjct: 65 EWLPRCAGGYKLGIRFENW--SEPGEYFYHPFERLRVVDGFNMAEWWLAVGDRRTSFSE 121
>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein,
FAD, mitochondrion, redox-active center, selenium,
selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus
musculus} PDB: 1zkq_A* 1zdl_A*
Length = 488
Score = 31.0 bits (71), Expect = 1.3
Identities = 11/46 (23%), Positives = 19/46 (41%), Gaps = 1/46 (2%)
Query: 71 PLQEEYDFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGPDEPTVTS 116
Q+ +D +V+GGG G + + KV + + P T
Sbjct: 2 GGQQSFDLLVIGGGSGG-LACAKEAAQLGKKVAVADYVEPSPRGTK 46
>1rzw_A Protein AF2095(GR4); beta-sheet of 4 parallel, anti-parallel
beta-strands and 3 alpha-helices, structural genomics,
PSI; NMR {Archaeoglobus fulgidus} SCOP: c.131.1.1 PDB:
3erj_A
Length = 123
Score = 29.4 bits (66), Expect = 1.3
Identities = 8/36 (22%), Positives = 15/36 (41%)
Query: 150 EWPRGKMLAGTGAMTGMMYTRSHPSIYDEWQRQGNP 185
+ RGK+ + Y +S S+ +W +G
Sbjct: 14 KLSRGKLAVQVAHAAIIGYLKSDSSLRRKWLDEGQK 49
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 30.0 bits (67), Expect = 1.4
Identities = 11/57 (19%), Positives = 17/57 (29%), Gaps = 20/57 (35%)
Query: 50 RTQCDLADP-CGRASSNLVRNRPLQEEYDFVVVGG----GVAGPVVAGRLV-ENPNW 100
C P C +V E + G + G V++ +LV W
Sbjct: 21 VLTC----PECKVYPPKIV------ERFS----EGDVVCALCGLVLSDKLVDTRSEW 63
>2fhf_A Pullulanase; multiple domain, beta-alpha-barrel,
alpha-amylase-family, complex with maltotetraose,
hydrolase; HET: GLC; 1.65A {Klebsiella aerogenes} SCOP:
b.1.18.2 b.1.18.2 b.3.1.3 b.71.1.1 c.1.8.1 PDB: 2fh6_A*
2fh8_A* 2fhb_A* 2fhc_A* 2fgz_A*
Length = 1083
Score = 30.8 bits (69), Expect = 1.6
Identities = 12/33 (36%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Query: 353 ELGIETISDLRVGYNLVHHVGANLKFSILDNGV 385
+LG+ I D V YN + G + S+LD V
Sbjct: 594 DLGMNVIMD--VVYNHTNAAGPTDRTSVLDKIV 624
>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural
genomics, PSI-2, protein STRU initiative; HET: AMP;
2.10A {Pyrococcus furiosus}
Length = 421
Score = 30.4 bits (69), Expect = 1.6
Identities = 10/31 (32%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Query: 79 VVVGGGVAGPVVAGRLVENPNWKVLLLEAGP 109
VVVG G+ G + L N ++++LE
Sbjct: 4 VVVGAGLGGLLAGAFLARN-GHEIIVLEKSA 33
>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR
initiative, midwest center for structural genomics; HET:
FAD; 2.15A {Agrobacterium tumefaciens}
Length = 297
Score = 30.2 bits (69), Expect = 1.8
Identities = 11/37 (29%), Positives = 20/37 (54%), Gaps = 7/37 (18%)
Query: 75 EYDFVVVGGGVAG---PVVAGRLVENPNWKVLLLEAG 108
++D +++GG AG + GR +LL++AG
Sbjct: 2 KFDVIIIGGSYAGLSAALQLGRA----RKNILLVDAG 34
>3pzp_A DNA polymerase kappa; DNA nucleotidyltransferase, DNA binding
nucleotide binding M binding, nucleus; HET: DNA TTD DTP;
3.34A {Homo sapiens}
Length = 517
Score = 30.4 bits (68), Expect = 2.1
Identities = 9/24 (37%), Positives = 14/24 (58%), Gaps = 2/24 (8%)
Query: 342 LSGVGPKS--HLDELGIETISDLR 363
+SG+G + L LGI T ++L
Sbjct: 343 VSGIGKVTEKMLKALGIITCTELY 366
>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing
protein, flavoprotein, PS protein structure initiative;
HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8
e.74.1.1
Length = 401
Score = 30.1 bits (69), Expect = 2.1
Identities = 8/36 (22%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Query: 74 EEYDFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGP 109
+ + +++G G AG A +L + V + + G
Sbjct: 3 QYSENIIIGAGAAGLFCAAQLAKL-GKSVTVFDNGK 37
>2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase,
complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas
testosteroni} PDB: 2dki_A*
Length = 639
Score = 30.3 bits (68), Expect = 2.1
Identities = 13/63 (20%), Positives = 25/63 (39%), Gaps = 4/63 (6%)
Query: 54 DLADPCGRASSNLVRNRPLQEEYDFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGPDEPT 113
+A A + + + D ++VG G AG +A +L P+ + ++E P
Sbjct: 14 LIAPASPLAPA---HTEAVPSQVDVLIVGCGPAGLTLAAQLAAFPDIRTCIVEQKE-GPM 69
Query: 114 VTS 116
Sbjct: 70 ELG 72
>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping
sickness, flavoPro redox-active center; HET: FAD WPF;
1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A*
2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A*
1bzl_A* 1aog_A*
Length = 495
Score = 30.2 bits (69), Expect = 2.1
Identities = 7/46 (15%), Positives = 15/46 (32%)
Query: 71 PLQEEYDFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGPDEPTVTS 116
+ + +D VV+G G G +V +++
Sbjct: 3 HMSKAFDLVVIGAGSGGLEAGWNAATLYGKRVAVVDVQTSHGPPFY 48
>4fk1_A Putative thioredoxin reductase; structural genomics, niaid,
national institute of allergy AN infectious diseases;
HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C*
Length = 304
Score = 29.8 bits (68), Expect = 2.3
Identities = 10/38 (26%), Positives = 16/38 (42%), Gaps = 7/38 (18%)
Query: 74 EEYDFVVVGGGVAG---PVVAGRLVENPNWKVLLLEAG 108
+ D V+G G AG +V GR ++ L +
Sbjct: 5 KYIDCAVIGAGPAGLNASLVLGRA----RKQIALFDNN 38
>1fec_A Trypanothione reductase; redox-active center, oxidoreductase,
flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia
fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A*
1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A*
2x50_A* 2ve2_A*
Length = 490
Score = 30.2 bits (69), Expect = 2.4
Identities = 14/100 (14%), Positives = 22/100 (22%), Gaps = 33/100 (33%)
Query: 74 EEYDFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGPDEPTVTS------------VP--- 118
YD VV+G G G +V +++ VP
Sbjct: 2 RAYDLVVIGAGSGGLEAGWNAASLHKKRVAVIDLQKHHGPPHYAALGGTCVNVGCVPKKL 61
Query: 119 -----------------GFAASAVGTHLDW-KYKTERNKY 140
G+ +W +NK
Sbjct: 62 MVTGANYMDTIRESAGFGWELDRESVRPNWKALIAAKNKA 101
>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent
N-hydroxylating monooxygenase, CLAS flavin dependent
monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A
{Pseudomonas aeruginosa} PDB: 3s61_A*
Length = 463
Score = 30.0 bits (67), Expect = 2.5
Identities = 12/53 (22%), Positives = 21/53 (39%), Gaps = 4/53 (7%)
Query: 62 ASSNLVRNRPLQEEYDFVVVGGGVAGPVVAGRLVE----NPNWKVLLLEAGPD 110
S++ + +D + VG G + +A L E +VL L+ D
Sbjct: 17 RGSHMTQATATAVVHDLIGVGFGPSNIALAIALQERAQAQGALEVLFLDKQGD 69
>3g3e_A D-amino-acid oxidase; FAD, flavoprotein, oxidoreductase, PER; HET:
FAD G3E; 2.20A {Homo sapiens} PDB: 3cuk_A* 2e48_A*
2e49_A* 2e4a_A* 2e82_A* 2du8_A* 1ve9_A* 1dao_A* 1ddo_A*
1kif_A* 1an9_A* 1evi_A*
Length = 351
Score = 29.7 bits (66), Expect = 2.7
Identities = 16/116 (13%), Positives = 30/116 (25%), Gaps = 12/116 (10%)
Query: 79 VVVGGGVAGPVVAGRLVEN-----PNWKVLLLEAGPDEPTVTSVPG--FAASAVGTHLDW 131
VV+G GV G A + E + + T T V + +
Sbjct: 4 VVIGAGVIGLSTALCIHERYHSVLQPLDIKVYADRFTPLTTTDVAAGLWQPYLSDPNNPQ 63
Query: 132 KYKTERNKYACLSTGGICEWPRGKMLAGTGAMTGMMYTRSHPSIYDEWQRQGNPGW 187
+ + + L + G ++G D + G+
Sbjct: 64 EADWSQQTFDYLLSHVHSPNAEN---LGLFLISGYNLFHEAIP--DPSWKDTVLGF 114
>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD;
2.72A {Stenotrophomonas maltophilia}
Length = 357
Score = 29.6 bits (67), Expect = 3.2
Identities = 10/37 (27%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Query: 74 EEYDFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGPD 110
+ D VV+GGG +G L + ++L+A
Sbjct: 2 DSVDVVVIGGGQSGLSAGYFLRRS-GLSYVILDAEAS 37
>3lm2_A Putative kinase; structural genomics, joint center for struc
genomics, JCSG, protein structure initiative, PSI-2,
transf; HET: MSE; 1.70A {Agrobacterium tumefaciens}
Length = 226
Score = 29.3 bits (66), Expect = 3.2
Identities = 8/41 (19%), Positives = 15/41 (36%), Gaps = 5/41 (12%)
Query: 72 LQEEYDFVVVGGGVAGPVVAGRLVEN-----PNWKVLLLEA 107
+ ++ + V+ G GPVV + + W E
Sbjct: 49 MAKDMTYDVIAMGYPGPVVHNKPLREPVNLGEGWVGYDYEG 89
>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase,
oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa}
PDB: 1zx9_A*
Length = 467
Score = 29.4 bits (67), Expect = 4.3
Identities = 11/36 (30%), Positives = 16/36 (44%), Gaps = 1/36 (2%)
Query: 73 QEEYDFVVVGGGVAGPVVAGRLVENPNWKVLLLEAG 108
+ V+G G A A + VE +V L+E G
Sbjct: 2 EPPVQVAVIGSGGAAMAAALKAVEQ-GAQVTLIERG 36
>2h88_A Succinate dehydrogenase flavoprotein subunit; complex II, membrane
protein, heme protein, iron sulfur PROT cytochrome B,
oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus
gallus} PDB: 1yq4_A* 1yq3_A* 2fbw_A* 2h89_A* 2wqy_A*
1zoy_A* 1zp0_A* 3abv_A* 3ae1_A* 3ae2_A* 3ae3_A* 3ae4_A*
3ae5_A* 3ae6_A* 3ae7_A* 3ae8_A* 3ae9_A* 3aea_A* 3aeb_A*
3aec_A* ...
Length = 621
Score = 29.2 bits (66), Expect = 4.5
Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Query: 61 RASSNLVRNRPLQE-EYDFVVVGGGVAGPVVAGRLVENPNWKVLLL 105
+ S ++ P+ + E+D VVVG G AG A L E + +
Sbjct: 3 KVSDSISTQYPVVDHEFDAVVVGAGGAGLRAAFGLSE-AGFNTACV 47
>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase;
HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5
d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*
Length = 493
Score = 29.3 bits (66), Expect = 4.6
Identities = 11/45 (24%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
Query: 69 NRPLQEEYDFVVVGGGVAGPVVAGRLVEN-PNWKVLLLEAGPDEP 112
F+++GGG A A + P +VL++ P+ P
Sbjct: 5 QDKAPSHVPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPELP 49
>2aq4_A DNA repair protein REV1; polymerase, PAD, N-digit, G-loop,
transferase; HET: DNA DOC DCP; 2.32A {Saccharomyces
cerevisiae} PDB: 3bjy_A* 3osp_A*
Length = 434
Score = 28.9 bits (65), Expect = 5.1
Identities = 11/37 (29%), Positives = 16/37 (43%), Gaps = 7/37 (18%)
Query: 344 GVGPKS--HLDEL--GIETISDLRVGY---NLVHHVG 373
GVG + L+ +++DLR Y L VG
Sbjct: 248 GVGHSTLSRLESTFDSPHSLNDLRKRYTLDALKASVG 284
>2sga_A Proteinase A; hydrolase (serine proteinase); 1.50A {Streptomyces
griseus} SCOP: b.47.1.1 PDB: 1sgc_A 3sga_E* 4sga_E
5sga_E 2sfa_A
Length = 181
Score = 28.3 bits (63), Expect = 5.7
Identities = 13/65 (20%), Positives = 26/65 (40%), Gaps = 1/65 (1%)
Query: 208 VDPEYHGYDGPLKVQRFSSYPPIGEDIIKAGKELGYASGDFNGANQIGVNFAQVMVDNGV 267
D + Y+G + + +G+ + ++G G SG G N VN+ + G+
Sbjct: 67 ADGRVYLYNGSYQDITTAGNAFVGQAVQRSGSTTGLRSGSVTGLNA-TVNYGSSGIVYGM 125
Query: 268 RSSTP 272
+
Sbjct: 126 IQTNV 130
>4ecq_A DNA polymerase ETA; transferase-DNA complex; HET: DNA DTP; 1.50A
{Homo sapiens} PDB: 3mr2_A* 3mr4_A* 3mr5_A* 3si8_A*
4dl2_A* 4dl3_A* 4dl4_A* 4dl5_A* 4dl6_A* 4dl7_A* 3mr3_A*
4ecr_A* 4ecs_A* 4ect_A* 4ecu_A* 4ecv_A* 4ecw_A* 4ecx_A*
4ecy_A* 4ecz_A* ...
Length = 435
Score = 28.8 bits (64), Expect = 5.7
Identities = 8/23 (34%), Positives = 13/23 (56%), Gaps = 3/23 (13%)
Query: 344 GVGPK---SHLDELGIETISDLR 363
+G K S ++ LGIE + +L
Sbjct: 260 SLGGKLGASVIEILGIEYMGELT 282
>2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical
bundle, sandwiched sheets, structural genomics; HET: TRP
FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A*
2ar8_A* 2ard_A* 2jkc_A*
Length = 538
Score = 28.9 bits (63), Expect = 5.8
Identities = 21/128 (16%), Positives = 38/128 (29%), Gaps = 20/128 (15%)
Query: 69 NRPLQEEYDFVVVGGGVAGPVVAGRLVE--NPNWKVLLLE------AGPDEPTVTSVPGF 120
N+P++ + V+VGGG AG + A LV + L+E G E T+ S+
Sbjct: 2 NKPIK---NIVIVGGGTAGWMAASYLVRALQQQANITLIESAAIPRIGVGEATIPSLQKV 58
Query: 121 AASAVGTHLDWKYKTERNKYACLSTGGICE-WPRGKMLAGTGAMTGMMYTRSHPSIYDEW 179
+G W + + + ++ +
Sbjct: 59 FFDFLGIPEREWM---PQVNGAFKAAIKFVNWRKSPDPSR-----DDHFYHLFGNVPNCD 110
Query: 180 QRQGNPGW 187
W
Sbjct: 111 GVPLTHYW 118
>2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo
oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}
Length = 376
Score = 28.8 bits (63), Expect = 6.0
Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 79 VVVGGGVAGPVVAGRLVENPNWKVLLLEAGPDEP 112
++VG G+AG +VAG L+ V +LEA +
Sbjct: 48 LIVGAGIAG-LVAGDLLTRAGHDVTILEANANRV 80
>3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG,
structural genomics, PSI-2, prote structure initiative;
HET: FAD; 2.15A {Vibrio parahaemolyticus}
Length = 549
Score = 28.8 bits (64), Expect = 6.5
Identities = 9/44 (20%), Positives = 17/44 (38%), Gaps = 1/44 (2%)
Query: 67 VRNRPLQEEYDFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGPD 110
V P +V+G G G L + + +++E G +
Sbjct: 99 VAKAPENLTERPIVIGFGPCGLFAGLVLAQ-MGFNPIIVERGKE 141
>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB;
TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus
rimd 2210633}
Length = 183
Score = 27.8 bits (62), Expect = 7.2
Identities = 6/37 (16%), Positives = 11/37 (29%)
Query: 74 EEYDFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGPD 110
+++G G G L L +E +
Sbjct: 38 GHAQVLILGMGRIGTGAYDELRARYGKISLGIEIREE 74
>2ea3_A Chymotrypsin; celloulomonas, protease, hydrolase; 1.78A
{Cellulomonas bogoriensis}
Length = 189
Score = 27.9 bits (62), Expect = 7.2
Identities = 11/67 (16%), Positives = 25/67 (37%), Gaps = 1/67 (1%)
Query: 204 NRDQVDPEYHGYDGPLKVQRFSSYPPIGEDIIKAGKELGYASGDFNGANQIGVNFAQVMV 263
+ + + Y G + P+G + ++G G+ G N V + + V
Sbjct: 64 AGVNLLAQVNNYSGGRVQVAGHTAAPVGSAVCRSGSTTGWHCGTITALNS-SVTYPEGTV 122
Query: 264 DNGVRSS 270
+R++
Sbjct: 123 RGLIRTT 129
>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity,
oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile}
PDB: 2rab_A*
Length = 463
Score = 28.6 bits (65), Expect = 7.4
Identities = 10/34 (29%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 75 EYDFVVVGGGVAGPVVAGRLVENPNWKVLLLEAG 108
+D + +GGG G VA + +V L+E+
Sbjct: 4 HFDLIAIGGGSGGLAVAEKAAAF-GKRVALIESK 36
>2pyx_A Tryptophan halogenase; structural genomics, JOI for structural
genomics, JCSG, protein structure initiative
biosynthetic protein; HET: MSE TLA PG4; 1.50A
{Shewanella frigidimarina}
Length = 526
Score = 28.5 bits (62), Expect = 7.8
Identities = 16/64 (25%), Positives = 24/64 (37%), Gaps = 16/64 (25%)
Query: 79 VVVGGGVAGPVVAGRL-----------VENPNWKVLLLEAGPDEPTVTSVPGFAASAVGT 127
++VGGG AG + AG L +P + L+E+ PD T G +
Sbjct: 11 IIVGGGTAGWITAGLLAAEHNVDKGVLAHSPKLNITLIES-PDVAT----IGVGEGTWPS 65
Query: 128 HLDW 131
Sbjct: 66 MRST 69
>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved
protein, rossmann fold, structural genomics, NPPSFA;
HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*
Length = 180
Score = 27.9 bits (63), Expect = 7.9
Identities = 18/61 (29%), Positives = 25/61 (40%), Gaps = 11/61 (18%)
Query: 76 YDFVVVGGGVAG---PVVAGRLVENPNWKVLLLEAGPDEPTVTSV----PGFAASAVGTH 128
+D +VVGGG +G + R KVL+L+ G + S PG G
Sbjct: 2 WDVIVVGGGPSGLSAALFLAR----AGLKVLVLDGGRSKVKGVSRVPNYPGLLDEPSGEE 57
Query: 129 L 129
L
Sbjct: 58 L 58
>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase,
rossmann, flavoprotein, alternative initiati
mitochondrion, NADP; HET: FAD; 1.75A {Drosophila
melanogaster} PDB: 2nvk_X* 3dh9_A*
Length = 483
Score = 28.3 bits (64), Expect = 8.5
Identities = 12/44 (27%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Query: 73 QEEYDFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGPDEPTVTS 116
+YD +V+GGG AG + + +V L+ PT+ +
Sbjct: 7 SYDYDLIVIGGGSAG-LACAKEAVLNGARVACLDFVKPTPTLGT 49
>3h28_A Sulfide-quinone reductase; monotopic membrane protein,
flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ
LMT; 2.00A {Aquifex aeolicus} PDB: 3h27_A* 3h29_A*
3hyv_A* 3hyw_A* 3hyx_A*
Length = 430
Score = 28.1 bits (63), Expect = 8.7
Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Query: 79 VVVGGGVAGPVVAGRLVE-NPNWKVLLLE 106
VV+GGGV G A L P+ K+ L+
Sbjct: 6 VVIGGGVGGIATAYNLRNLMPDLKITLIS 34
>1hpg_A Glutamic acid specific protease; serine protease,
hydrolase-hydrolase inhibitor complex; 1.50A
{Streptomyces griseus} SCOP: b.47.1.1
Length = 187
Score = 27.5 bits (61), Expect = 8.9
Identities = 15/67 (22%), Positives = 26/67 (38%), Gaps = 1/67 (1%)
Query: 204 NRDQVDPEYHGYDGPLKVQRFSSYPPIGEDIIKAGKELGYASGDFNGANQIGVNFAQVMV 263
+ Y+G + ++ +G+ I K+G SG N VN+ V
Sbjct: 70 DGSSPAGTVDLYNGSTQDISSAANAVVGQAIKKSGSTTKVTSGTVTAVNV-TVNYGDGPV 128
Query: 264 DNGVRSS 270
N VR++
Sbjct: 129 YNMVRTT 135
>2x8g_A Thioredoxin glutathione reductase; redox-active center,
detoxification pathway, oxidoreductase, flavoprotein;
HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A*
2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*
Length = 598
Score = 28.1 bits (63), Expect = 9.3
Identities = 16/99 (16%), Positives = 29/99 (29%), Gaps = 34/99 (34%)
Query: 75 EYDFVVVGGGVAGPVVAGRLVENPNWKVLLLEAGPDEPTVTS------------VP---- 118
+YD +V+GGG G + AG+ K +L+ P T+ +P
Sbjct: 107 DYDLIVIGGGSGG-LAAGKEAAKYGAKTAVLDYVEPTPIGTTWGLGGTCVNVGCIPKKLM 165
Query: 119 ----------------GFAASAVGTHLDW-KYKTERNKY 140
G++ +W +
Sbjct: 166 HQAGLLSHALEDAEHFGWSLDRSKISHNWSTMVEGVQSH 204
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch
recognition, mismatched unpaired DNA binding protein-DNA
complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A*
2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Length = 934
Score = 28.4 bits (64), Expect = 9.4
Identities = 2/19 (10%), Positives = 9/19 (47%)
Query: 352 DELGIETISDLRVGYNLVH 370
+LG++ +++ +
Sbjct: 501 RDLGLDPGKQIKLDSSAQF 519
>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone
oxidoreductase, Cys356Ala variant, integral membrane
protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus
ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A*
3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A*
3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A*
Length = 437
Score = 28.2 bits (63), Expect = 9.4
Identities = 8/30 (26%), Positives = 13/30 (43%), Gaps = 2/30 (6%)
Query: 79 VVVGGGVAGPVVAGRLVE--NPNWKVLLLE 106
V++G G G A + E +V L+
Sbjct: 8 VILGAGTGGMPAAYEMKEALGSGHEVTLIS 37
>1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate
binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A
{Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2
d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A*
Length = 830
Score = 28.1 bits (63), Expect = 9.6
Identities = 11/32 (34%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Query: 79 VVVGGGVAGPVVAGRLVENPNWK-VLLLEAGP 109
V++G G+ G +A LV W + +L+ GP
Sbjct: 8 VIIGAGIVGTNLADELVTR-GWNNITVLDQGP 38
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.135 0.409
Gapped
Lambda K H
0.267 0.0809 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 9,581,961
Number of extensions: 594544
Number of successful extensions: 1426
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1318
Number of HSP's successfully gapped: 161
Length of query: 614
Length of database: 6,701,793
Length adjustment: 99
Effective length of query: 515
Effective length of database: 3,937,614
Effective search space: 2027871210
Effective search space used: 2027871210
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (26.7 bits)