BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10407
(210 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P04323|POL3_DROME Retrovirus-related Pol polyprotein from transposon 17.6
OS=Drosophila melanogaster GN=pol PE=4 SV=1
Length = 1058
Score = 43.9 bits (102), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 20/38 (52%), Positives = 27/38 (71%)
Query: 115 SARLQRWSLILSNFDYSIKYKKGTQIPVADALSRLPLS 152
+++L RW + LS FD+ IKY KG + VADALSR+ L
Sbjct: 590 NSKLTRWRVKLSEFDFDIKYIKGKENCVADALSRIKLE 627
>sp|Q9UR07|RTF23_SCHPO Retrotransposable element Tf2 155 kDa protein type 3
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=Tf2-11 PE=4 SV=1
Length = 1333
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 5/71 (7%)
Query: 114 SSARLQRWSLILSNFDYSIKYKKGTQIPVADALSRL-----PLSNDLGFKELGLTANIII 168
+ RL RW L L +F++ I Y+ G+ +ADALSR+ P+ D + I I
Sbjct: 797 ENKRLARWQLFLQDFNFEINYRPGSANHIADALSRIVDETEPIPKDSEDNSINFVNQISI 856
Query: 169 NSTRKDKVLSR 179
K++V++
Sbjct: 857 TDDFKNQVVTE 867
>sp|Q9C0R2|RTF22_SCHPO Retrotransposable element Tf2 155 kDa protein type 2
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=Tf2-7 PE=4 SV=1
Length = 1333
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 5/71 (7%)
Query: 114 SSARLQRWSLILSNFDYSIKYKKGTQIPVADALSRL-----PLSNDLGFKELGLTANIII 168
+ RL RW L L +F++ I Y+ G+ +ADALSR+ P+ D + I I
Sbjct: 797 ENKRLARWQLFLQDFNFEINYRPGSANHIADALSRIVDETEPIPKDSEDNSINFVNQISI 856
Query: 169 NSTRKDKVLSR 179
K++V++
Sbjct: 857 TDDFKNQVVTE 867
>sp|Q05654|RTF21_SCHPO Retrotransposable element Tf2 155 kDa protein type 1
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=Tf2-1 PE=4 SV=1
Length = 1333
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 5/71 (7%)
Query: 114 SSARLQRWSLILSNFDYSIKYKKGTQIPVADALSRL-----PLSNDLGFKELGLTANIII 168
+ RL RW L L +F++ I Y+ G+ +ADALSR+ P+ D + I I
Sbjct: 797 ENKRLARWQLFLQDFNFEINYRPGSANHIADALSRIVDETEPIPKDSEDNSINFVNQISI 856
Query: 169 NSTRKDKVLSR 179
K++V++
Sbjct: 857 TDDFKNQVVTE 867
>sp|P20825|POL2_DROME Retrovirus-related Pol polyprotein from transposon 297
OS=Drosophila melanogaster GN=pol PE=4 SV=1
Length = 1059
Score = 40.8 bits (94), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 26/39 (66%)
Query: 116 ARLQRWSLILSNFDYSIKYKKGTQIPVADALSRLPLSND 154
A+L+RW + LS + + I Y KG + VADALSR+ + +
Sbjct: 590 AKLERWRVRLSEYQFKIDYIKGKENSVADALSRIKIEEN 628
>sp|Q7LHG5|YI31B_YEAST Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=TY3B-I PE=3 SV=2
Length = 1498
Score = 40.0 bits (92), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 67/138 (48%), Gaps = 27/138 (19%)
Query: 31 VISGFTNYNFYRKDFLDGRISCGGVMLMIHKK--------YFSQPV-------PGSPVEM 75
V+ F N YR + G V+ + K YFS+ + P +E+
Sbjct: 904 VLVPFNNKANYRLTTDASKDGIGAVLEEVDNKNKLVGVVGYFSKSLESAQKNYPAGELEL 963
Query: 76 GCCTNSLH-FKYI----HCSLNEATDNKALVTLFGEDKAVPMLSSARLQRWSLILSNFDY 130
+LH F+Y+ H +L TD+ +L++L ++K P + R+QRW L+ +D+
Sbjct: 964 LGIIKALHHFRYMLHGKHFTLR--TDHISLLSL--QNKNEP---ARRVQRWLDDLATYDF 1016
Query: 131 SIKYKKGTQIPVADALSR 148
+++Y G + VADA+SR
Sbjct: 1017 TLEYLAGPKNVVADAISR 1034
>sp|Q99315|YG31B_YEAST Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=TY3B-G PE=1 SV=3
Length = 1547
Score = 39.7 bits (91), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 67/138 (48%), Gaps = 27/138 (19%)
Query: 31 VISGFTNYNFYRKDFLDGRISCGGVMLMIHKK--------YFSQPV-------PGSPVEM 75
V+ F N YR + G V+ + K YFS+ + P +E+
Sbjct: 878 VLVPFNNKANYRLTTDASKDGIGAVLEEVDNKNKLVGVVGYFSKSLESAQKNYPAGELEL 937
Query: 76 GCCTNSLH-FKYI----HCSLNEATDNKALVTLFGEDKAVPMLSSARLQRWSLILSNFDY 130
+LH F+Y+ H +L TD+ +L++L ++K P + R+QRW L+ +D+
Sbjct: 938 LGIIKALHHFRYMLHGKHFTLR--TDHISLLSL--QNKNEP---ARRVQRWLDDLATYDF 990
Query: 131 SIKYKKGTQIPVADALSR 148
+++Y G + VADA+SR
Sbjct: 991 TLEYLAGPKNVVADAISR 1008
>sp|P10394|POL4_DROME Retrovirus-related Pol polyprotein from transposon 412
OS=Drosophila melanogaster GN=POL PE=4 SV=1
Length = 1237
Score = 38.5 bits (88), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 53/95 (55%), Gaps = 16/95 (16%)
Query: 82 LHFK-YIHCS-LNEATDNKALVTLFGEDKAVPMLS-SARLQRWSLILSNFDYSIKYKKGT 138
+HF+ YI+ TD++ L LF M++ S++L R L L ++++++Y KG
Sbjct: 671 IHFRPYIYGKHFTVKTDHRPLTYLFS------MVNPSSKLTRIRLELEEYNFTVEYLKGK 724
Query: 139 QIPVADALSRLPLSNDLGFKEL-GLTANIIINSTR 172
VADALSR+ + KEL +T NI+ +TR
Sbjct: 725 DNHVADALSRITI------KELKDITGNILKVTTR 753
>sp|Q8I7P9|POL5_DROME Retrovirus-related Pol polyprotein from transposon opus
OS=Drosophila melanogaster GN=pol PE=4 SV=1
Length = 1003
Score = 35.0 bits (79), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 27/46 (58%), Gaps = 5/46 (10%)
Query: 115 SARLQRWSLILSNFDYSIKYKKGTQIPVADALSRLP-----LSNDL 155
+A+L+RW + ++ + YK G VADALSR+P LS DL
Sbjct: 521 NAKLKRWKARIEEYNCELIYKPGKSNVVADALSRIPPQLNQLSTDL 566
>sp|B4ESY9|DCD_PROMH Deoxycytidine triphosphate deaminase OS=Proteus mirabilis (strain
HI4320) GN=dcd PE=3 SV=1
Length = 193
Score = 34.7 bits (78), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 31/60 (51%), Gaps = 11/60 (18%)
Query: 1 MVLPWYKAQNLLPGYNQLFVTMETHLLPDKVISGFTNYNFYRKDFLDGRISCGGVMLMIH 60
+VLP +A L PG L VT+E+ LPD V+ +LDGR S + LM+H
Sbjct: 73 IVLPEGEAFYLHPGELALAVTLESVTLPDNVVG-----------WLDGRSSLARLGLMVH 121
>sp|B2VFR2|DCD_ERWT9 Deoxycytidine triphosphate deaminase OS=Erwinia tasmaniensis
(strain DSM 17950 / Et1/99) GN=dcd PE=3 SV=1
Length = 193
Score = 32.7 bits (73), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 30/60 (50%), Gaps = 11/60 (18%)
Query: 1 MVLPWYKAQNLLPGYNQLFVTMETHLLPDKVISGFTNYNFYRKDFLDGRISCGGVMLMIH 60
+VLP A L PG L VT+E+ LPD ++ +LDGR S + LM+H
Sbjct: 73 IVLPEGDAFFLHPGELALAVTLESVTLPDDLVG-----------WLDGRSSLARLGLMVH 121
>sp|Q91YA2|KPSH1_MOUSE Serine/threonine-protein kinase H1 OS=Mus musculus GN=Pskh1 PE=2
SV=3
Length = 424
Score = 32.7 bits (73), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 52/115 (45%), Gaps = 25/115 (21%)
Query: 94 ATDNKALVTLFGEDKAVPMLSSARLQRWSLILSNFDYSIKYKKGTQIPVA-DALSRLPLS 152
TD+K ++T FG L+SAR + D +K GT +A + L R P +
Sbjct: 230 GTDSKIIITDFG-------LASARKK-------GDDCLMKTTCGTPEYIAPEVLVRKPYT 275
Query: 153 NDLGFKELGLTANIII---------NSTR-KDKVLSRVMEYVKHGWPSVKNLSCD 197
N + LG+ A I++ N TR ++L Y+ WPSV NL+ D
Sbjct: 276 NSVDMWALGVIAYILLSGTMPFEDDNRTRLYRQILRGKYSYLGEPWPSVSNLAKD 330
>sp|Q47077|BGAL1_ENTCL Beta-galactosidase OS=Enterobacter cloacae GN=lacZ PE=3 SV=1
Length = 1028
Score = 32.3 bits (72), Expect = 2.1, Method: Composition-based stats.
Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Query: 117 RLQRWSLILSNFDYSIKYKKGTQI---PVADALSRLPLSNDLGFKE 159
R QRW ++ + + ++ G + P+ D +SR PL ND+G E
Sbjct: 756 RQQRWQFDRASGNLTQWWRNGVETLLSPLTDNVSRAPLDNDIGVSE 801
>sp|P05400|POL_CERV Enzymatic polyprotein OS=Carnation etched ring virus GN=ORF V PE=3
SV=1
Length = 659
Score = 32.3 bits (72), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 11/64 (17%)
Query: 95 TDNKAL-----VTLFGEDKAVPMLSSARLQRWSLILSNFDYSIKYKKGTQIPVADALSRL 149
TDNK + L G+ K RL RW + LS +D+ +++ GT+ AD L
Sbjct: 600 TDNKNFTHFVNINLKGDRK------QGRLVRWQMWLSQYDFDVEHIAGTKNVFADFLQEN 653
Query: 150 PLSN 153
L+N
Sbjct: 654 TLTN 657
>sp|P11801|KPSH1_HUMAN Serine/threonine-protein kinase H1 OS=Homo sapiens GN=PSKH1 PE=1
SV=4
Length = 424
Score = 32.0 bits (71), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 53/115 (46%), Gaps = 25/115 (21%)
Query: 94 ATDNKALVTLFGEDKAVPMLSSARLQRWSLILSNFDYSIKYKKGTQIPVA-DALSRLPLS 152
TD+K ++T FG L+SAR + D +K GT +A + L R P +
Sbjct: 230 GTDSKIIITDFG-------LASARKK-------GDDCLMKTTCGTPEYIAPEVLVRKPYT 275
Query: 153 NDLGFKELGLTANIIINSTR--KDKVLSRVMEYVKHG--------WPSVKNLSCD 197
N + LG+ A I+++ T +D +R+ + G WPSV NL+ D
Sbjct: 276 NSVDMWALGVIAYILLSGTMPFEDDNRTRLYRQILRGKYSYSGEPWPSVSNLAKD 330
>sp|Q0V7M1|KPSH1_BOVIN Serine/threonine-protein kinase H1 OS=Bos taurus GN=PSKH1 PE=2 SV=1
Length = 424
Score = 32.0 bits (71), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 53/115 (46%), Gaps = 25/115 (21%)
Query: 94 ATDNKALVTLFGEDKAVPMLSSARLQRWSLILSNFDYSIKYKKGTQIPVA-DALSRLPLS 152
TD+K ++T FG L+SAR + D +K GT +A + L R P +
Sbjct: 230 GTDSKIIITDFG-------LASARKK-------GDDCLMKTTCGTPEYIAPEVLVRKPYT 275
Query: 153 NDLGFKELGLTANIIINSTR--KDKVLSRVMEYVKHG--------WPSVKNLSCD 197
N + LG+ A I+++ T +D +R+ + G WPSV NL+ D
Sbjct: 276 NSVDMWALGVIAYILLSGTMPFEDDNRTRLYRQILRGKYSYSGEPWPSVSNLAKD 330
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.137 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 76,900,762
Number of Sequences: 539616
Number of extensions: 3012235
Number of successful extensions: 5990
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 5979
Number of HSP's gapped (non-prelim): 20
length of query: 210
length of database: 191,569,459
effective HSP length: 112
effective length of query: 98
effective length of database: 131,132,467
effective search space: 12850981766
effective search space used: 12850981766
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.9 bits)