RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy10407
         (210 letters)



>1rw3_A POL polyprotein; RNA and DNA dependent DNA polymerase, reverse
           transcriptase, transferase, replication; 3.00A {Moloney
           murine leukemia virus} SCOP: e.8.1.2
          Length = 455

 Score = 36.9 bits (86), Expect = 0.003
 Identities = 6/41 (14%), Positives = 16/41 (39%), Gaps = 3/41 (7%)

Query: 95  TDNKALVTLFGEDKAVPMLSSARLQRWSLILSNFDYSIKYK 135
             +     +         LS+AR+  +  +L + D  +++ 
Sbjct: 417 APHAVEALVK--QPPDRWLSNARMTHYQALLLDTDR-VQFG 454


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 34.1 bits (77), Expect = 0.030
 Identities = 32/224 (14%), Positives = 79/224 (35%), Gaps = 57/224 (25%)

Query: 15  YNQLFVTMETHLLPDKVIS----------------GFTNYNFYRKDFLDGRISCGGVMLM 58
           +++L V   +  +P  ++S                    Y+   K   +  IS       
Sbjct: 375 FDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTIS------- 427

Query: 59  IHKKYFS--QPVPGSPVEMGCCTNSLHFKYIHC-SLNEATDNKALVTLFGEDK------A 109
           I   Y      +            +LH   +   ++ +  D+  L+  +  D+       
Sbjct: 428 IPSIYLELKVKLENEY--------ALHRSIVDHYNIPKTFDSDDLIPPY-LDQYFYSHIG 478

Query: 110 VPMLSSARLQRWSL---ILSNFDYSIKYK-KGTQIPVADALSRLPLSNDLGFKELGLTAN 165
             + +    +R +L   +  +F + ++ K +        + S L     L F +      
Sbjct: 479 HHLKNIEHPERMTLFRMVFLDFRF-LEQKIRHDSTAWNASGSILNTLQQLKFYK----PY 533

Query: 166 IIINSTRKDKVLSRVMEYV-KHGWPSVKNLSCDKKTFHTVVKIS 208
           I  N  + +++++ +++++ K      +NL C K T   +++I+
Sbjct: 534 ICDNDPKYERLVNAILDFLPKIE----ENLICSKYT--DLLRIA 571


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 27.3 bits (60), Expect = 4.4
 Identities = 22/115 (19%), Positives = 32/115 (27%), Gaps = 51/115 (44%)

Query: 90  SLNEATDNKALVTLF--------------------------GEDKAVPMLSSARLQRWSL 123
           S   +   KA+  LF                           E    PMLS + L +  +
Sbjct: 291 SFFVSVR-KAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQV 349

Query: 124 ILSNFDYSIKYKKGTQIPVADALSRLPLSNDLGFKELGLTANIIINSTRKDKVLS 178
                          Q  V    S LP    +   E+ L     +N   K+ V+S
Sbjct: 350 ---------------QDYVNKTNSHLPAGKQV---EISL-----VNG-AKNLVVS 380


>3cnk_A Filamin-A; FLNA24, X-RAY crystalography, homodimer, acetylation,
          actin-binding, cytoplasm, cytoskeleton, disease
          mutation, phosphoprotein; 1.65A {Homo sapiens}
          Length = 89

 Score = 25.8 bits (57), Expect = 4.4
 Identities = 14/66 (21%), Positives = 20/66 (30%), Gaps = 17/66 (25%)

Query: 14 GYNQLFVTMETHLLPDKVISGFTNYNFYRKDFLDGRISC-------GGVMLMIHKKYFSQ 66
          G N L V +     P              K       S        G   L++  K+  +
Sbjct: 28 GNNMLLVGVHG---PRTPC-----EEILVKHVGSRLYSVSYLLKDKGEYTLVV--KWGHE 77

Query: 67 PVPGSP 72
           +PGSP
Sbjct: 78 HIPGSP 83


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.321    0.137    0.418 

Gapped
Lambda     K      H
   0.267   0.0686    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,150,679
Number of extensions: 172561
Number of successful extensions: 305
Number of sequences better than 10.0: 1
Number of HSP's gapped: 304
Number of HSP's successfully gapped: 6
Length of query: 210
Length of database: 6,701,793
Length adjustment: 89
Effective length of query: 121
Effective length of database: 4,216,824
Effective search space: 510235704
Effective search space used: 510235704
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.1 bits)