RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy10407
         (210 letters)



>d1jfma_ d.19.1.1 (A:) NK cell ligand RAE-1 beta {Mouse (Mus
           musculus) [TaxId: 10090]}
          Length = 174

 Score = 28.0 bits (62), Expect = 0.56
 Identities = 8/44 (18%), Positives = 12/44 (27%), Gaps = 6/44 (13%)

Query: 9   QNLLPGYNQ------LFVTMETHLLPDKVISGFTNYNFYRKDFL 46
            N     ++      L VTM       +  S    +N     F 
Sbjct: 77  SNTKVDTHKTNGYPHLQVTMIYPQSQGRTPSATWEFNISDSYFF 120


>d1ybfa_ c.56.2.1 (A:) AMP nucleosidase {Bacteroides
          thetaiotaomicron [TaxId: 818]}
          Length = 246

 Score = 26.2 bits (57), Expect = 2.7
 Identities = 7/45 (15%), Positives = 14/45 (31%), Gaps = 15/45 (33%)

Query: 35 FTNYNFYRKDFLDGRISCGGVMLMIHKKYFSQPVPGSPVEMGCCT 79
           TN++ Y   F +               ++  P+ G    M   +
Sbjct: 27 LTNFSHYLHVFAE---------------HYGVPIVGEHTSMPNAS 56


>d2diba1 b.1.18.10 (A:8-122) Filamin b {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 115

 Score = 24.5 bits (53), Expect = 5.4
 Identities = 5/14 (35%), Positives = 7/14 (50%)

Query: 59  IHKKYFSQPVPGSP 72
           +   Y   P+P SP
Sbjct: 90  VEVTYDDVPIPNSP 103


>d2w0pa1 b.1.18.10 (A:2237-2328) Filamin a {Human (Homo sapiens)
          [TaxId: 9606]}
          Length = 92

 Score = 24.1 bits (52), Expect = 5.8
 Identities = 4/14 (28%), Positives = 8/14 (57%)

Query: 59 IHKKYFSQPVPGSP 72
          +  K+  + +P SP
Sbjct: 71 VSVKFNEEHIPDSP 84


>d2d7ma1 b.1.18.10 (A:8-109) Filamin C {Human (Homo sapiens)
          [TaxId: 9606]}
          Length = 102

 Score = 24.5 bits (53), Expect = 5.9
 Identities = 6/14 (42%), Positives = 7/14 (50%)

Query: 59 IHKKYFSQPVPGSP 72
          I  KY    +P SP
Sbjct: 77 ITIKYGGDEIPYSP 90


>d2dica1 b.1.18.10 (A:8-105) Filamin b {Human (Homo sapiens)
          [TaxId: 9606]}
          Length = 98

 Score = 24.1 bits (52), Expect = 6.2
 Identities = 5/14 (35%), Positives = 8/14 (57%)

Query: 59 IHKKYFSQPVPGSP 72
          ++  Y    +PGSP
Sbjct: 73 VNITYGGAHIPGSP 86


>d2di8a1 b.1.18.10 (A:8-105) Filamin b {Human (Homo sapiens)
          [TaxId: 9606]}
          Length = 98

 Score = 24.2 bits (52), Expect = 6.7
 Identities = 6/14 (42%), Positives = 9/14 (64%)

Query: 59 IHKKYFSQPVPGSP 72
          +  K+  + VPGSP
Sbjct: 73 VSTKFADEHVPGSP 86


>d1h4ra1 a.11.2.1 (A:104-214) Merlin {Human (Homo sapiens) [TaxId:
          9606]}
          Length = 111

 Score = 24.4 bits (53), Expect = 6.8
 Identities = 7/27 (25%), Positives = 15/27 (55%), Gaps = 3/27 (11%)

Query: 29 DKVISGFTNYNFY---RKDFLDGRISC 52
          ++++   T + F+   +K  LD +I C
Sbjct: 4  EELVQEITQHLFFLQVKKQILDEKIYC 30


>d2dmca1 b.1.18.10 (A:8-110) Filamin b {Human (Homo sapiens)
          [TaxId: 9606]}
          Length = 103

 Score = 24.1 bits (52), Expect = 7.3
 Identities = 4/14 (28%), Positives = 5/14 (35%)

Query: 59 IHKKYFSQPVPGSP 72
          +  K     V  SP
Sbjct: 78 VSIKKNGNHVANSP 91


>d1v05a_ b.1.18.10 (A:) Filamin C {Human (Homo sapiens) [TaxId:
          9606]}
          Length = 96

 Score = 24.2 bits (52), Expect = 7.6
 Identities = 6/14 (42%), Positives = 9/14 (64%)

Query: 59 IHKKYFSQPVPGSP 72
          +  K+  + VPGSP
Sbjct: 77 LIVKWGDESVPGSP 90


>d2dj4a1 b.1.18.10 (A:8-108) Filamin b {Human (Homo sapiens)
          [TaxId: 9606]}
          Length = 101

 Score = 24.1 bits (52), Expect = 7.9
 Identities = 5/14 (35%), Positives = 8/14 (57%)

Query: 59 IHKKYFSQPVPGSP 72
          +  KY  + +P SP
Sbjct: 76 VSVKYADEEIPRSP 89


>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId:
           10116]}
          Length = 169

 Score = 24.5 bits (52), Expect = 8.2
 Identities = 12/70 (17%), Positives = 20/70 (28%), Gaps = 3/70 (4%)

Query: 35  FTNYNFYRKDFLDGRISCGGVMLMIHKKYFSQPVPGSPVEMGCCTNSLHFKYIHCSLNEA 94
           F     +             V+L+ +K         S        + L F++   S   A
Sbjct: 93  FNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEAS---A 149

Query: 95  TDNKALVTLF 104
            DN  +   F
Sbjct: 150 KDNINVKQTF 159


>d2bp3a1 b.1.18.10 (A:1863-1954) Filamin a {Human (Homo sapiens)
          [TaxId: 9606]}
          Length = 92

 Score = 23.8 bits (51), Expect = 8.3
 Identities = 9/14 (64%), Positives = 9/14 (64%)

Query: 59 IHKKYFSQPVPGSP 72
          I  KY  Q VPGSP
Sbjct: 72 ILVKYNEQHVPGSP 85


>d1h4ra2 b.55.1.5 (A:215-313) Merlin {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 99

 Score = 24.0 bits (52), Expect = 8.6
 Identities = 6/33 (18%), Positives = 12/33 (36%)

Query: 178 SRVMEYVKHGWPSVKNLSCDKKTFHTVVKISNK 210
           +R+   +   W  ++N+S   K F         
Sbjct: 34  NRLTPKISFPWNEIRNISYSDKEFTIKPLDKKI 66


>d2di9a1 b.1.18.10 (A:8-125) Filamin b {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 118

 Score = 24.2 bits (52), Expect = 9.4
 Identities = 4/14 (28%), Positives = 8/14 (57%)

Query: 59  IHKKYFSQPVPGSP 72
           ++  +    +PGSP
Sbjct: 93  VNILFEEVHIPGSP 106


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.321    0.137    0.418 

Gapped
Lambda     K      H
   0.267   0.0467    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 786,052
Number of extensions: 34219
Number of successful extensions: 98
Number of sequences better than 10.0: 1
Number of HSP's gapped: 98
Number of HSP's successfully gapped: 18
Length of query: 210
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 129
Effective length of database: 1,295,466
Effective search space: 167115114
Effective search space used: 167115114
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.1 bits)