BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1041
(1095 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2A62|A Chain A, Crystal Structure Of Mouse Cadherin-8 Ec1-3
Length = 322
Score = 123 bits (308), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 93/284 (32%), Positives = 149/284 (52%), Gaps = 15/284 (5%)
Query: 779 DLGYNGKLVFGISSGDN-DSVFRIDPDSGELKVVGYLDRERTSEYTLNITVYDL--GKPQ 835
DL K + I SGD ++F+I+ +G++ + LDRE +EYTL D KP
Sbjct: 27 DLDPGSKKIKYILSGDGAGTIFQINDITGDIHAIKRLDREEKAEYTLTAQAVDFETNKPL 86
Query: 836 KSTSKMLPITILDVNDNPPKFEKSLASFRVTENALNGTVIFKVNATDLD---LGDNAKVV 892
+ S+ + I + D+NDN P+F V E ++ GT + V ATD D G++AK+V
Sbjct: 87 EPPSEFI-IKVQDINDNAPEFLNGPYHATVPEMSILGTSVTNVTATDADDPVYGNSAKLV 145
Query: 893 YSLMTDTQDFAVDSATGSLYVS-ASLDRERQDLYELKIRASDCDGRNDMYTLHADALVRV 951
YS++ F+++ T + + ++DRE ++ Y + I+A D G + L + V
Sbjct: 146 YSILEGQPYFSIEPETAIIKTALPNMDREAKEEYLVVIQAKDMGGHSG--GLSGTTTLTV 203
Query: 952 TIDDINDNAPNFALPNYSVKVREDIPVGTVVAILSASDPDLGQGGVVRYTIVSDNEADDV 1011
T+ D+NDN P FA Y V ED+ +GT + + A+D D+G+ Y I+ D + +
Sbjct: 204 TLTDVNDNPPKFAQSLYHFSVPEDVVLGTAIGRVKANDQDIGENAQSSYDII-DGDGTAL 262
Query: 1012 FSI----DRLTGTIRVAKPLDFEKRQVHSLVVRAKDNGSPPLYS 1051
F I G IR+ KPLDFE ++ ++L V A + P +S
Sbjct: 263 FEITSDAQAQDGVIRLRKPLDFETKKSYTLKVEAANIHIDPRFS 306
Score = 100 bits (249), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 88/277 (31%), Positives = 133/277 (48%), Gaps = 32/277 (11%)
Query: 317 TKIDPGTKKKEY------------------NIVVLKLLDREIAPLGYNLTLRAVDKGT-P 357
T +DPG+KK +Y +I +K LDRE Y LT +AVD T
Sbjct: 26 TDLDPGSKKIKYILSGDGAGTIFQINDITGDIHAIKRLDRE-EKAEYTLTAQAVDFETNK 84
Query: 358 PRETYKATQVHLVDLNDNKPVFDREIYEVDVPETTPVNTPIIRLKVSDADD---GKNAQV 414
P E + + D+NDN P F Y VPE + + T + + +DADD G +A++
Sbjct: 85 PLEPPSEFIIKVQDINDNAPEFLNGPYHATVPEMSILGTSVTNVTATDADDPVYGNSAKL 144
Query: 415 FLEIVGGNEGGEFNINPETGMLYTAV-TLDAEDKAFYTLTVSAIDQGNAGTRKQSAAKVK 473
I+ G F+I PET ++ TA+ +D E K Y + + A D G +
Sbjct: 145 VYSILEGQP--YFSIEPETAIIKTALPNMDREAKEEYLVVIQAKDMGGHSGGLSGTTTLT 202
Query: 474 VNIVDTNDNDPLFDSPEMEVSINENEPAGTSVIKVTAKDKDSGENAYISYSIAN-----L 528
V + D NDN P F S+ E+ GT++ +V A D+D GENA SY I + L
Sbjct: 203 VTLTDVNDNPPKFAQSLYHFSVPEDVVLGTAIGRVKANDQDIGENAQSSYDIIDGDGTAL 262
Query: 529 KPVPFEIDHFSGVIKTTQVLDYESMRREYILRVRASD 565
+ + GVI+ + LD+E+ ++ Y L+V A++
Sbjct: 263 FEITSDAQAQDGVIRLRKPLDFET-KKSYTLKVEAAN 298
Score = 87.4 bits (215), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 69/202 (34%), Positives = 103/202 (50%), Gaps = 14/202 (6%)
Query: 745 NVHVPEFFSFPIELQVNESVPLKSTLTKIIARDRD---LGYNGKLVFGISSGDNDSVFRI 801
N + PEF + P V E L +++T + A D D G + KLV+ I G F I
Sbjct: 100 NDNAPEFLNGPYHATVPEMSILGTSVTNVTATDADDPVYGNSAKLVYSILEGQ--PYFSI 157
Query: 802 DPDSGELK-VVGYLDRERTSEYTLNITVYDLGKPQKSTS--KMLPITILDVNDNPPKFEK 858
+P++ +K + +DRE EY + I D+G S L +T+ DVNDNPPKF +
Sbjct: 158 EPETAIIKTALPNMDREAKEEYLVVIQAKDMGGHSGGLSGTTTLTVTLTDVNDNPPKFAQ 217
Query: 859 SLASFRVTENALNGTVIFKVNATDLDLGDNAKVVYSLM--TDTQDFAVDSAT----GSLY 912
SL F V E+ + GT I +V A D D+G+NA+ Y ++ T F + S G +
Sbjct: 218 SLYHFSVPEDVVLGTAIGRVKANDQDIGENAQSSYDIIDGDGTALFEITSDAQAQDGVIR 277
Query: 913 VSASLDRERQDLYELKIRASDC 934
+ LD E + Y LK+ A++
Sbjct: 278 LRKPLDFETKKSYTLKVEAANI 299
Score = 80.1 bits (196), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 85/249 (34%), Positives = 120/249 (48%), Gaps = 15/249 (6%)
Query: 404 SDADDGKNAQVFLEIVGGNEGGEFNINPETGMLYTAVTLDAEDKAFYTLTVSAID-QGNA 462
+D D G ++ + G G F IN TG ++ LD E+KA YTLT A+D + N
Sbjct: 26 TDLDPGSKKIKYI-LSGDGAGTIFQINDITGDIHAIKRLDREEKAEYTLTAQAVDFETNK 84
Query: 463 GTRKQSAAKVKVNIVDTNDNDPLFDSPEMEVSINENEPAGTSVIKVTAKDKDS---GENA 519
S +KV D NDN P F + ++ E GTSV VTA D D G +A
Sbjct: 85 PLEPPSEFIIKVQ--DINDNAPEFLNGPYHATVPEMSILGTSVTNVTATDADDPVYGNSA 142
Query: 520 YISYSIANLKPVPFEIDHFSGVIKTTQV-LDYESMRREYILRVRASDWG-LPYRRQTEMQ 577
+ YSI +P F I+ + +IKT +D E+ + EY++ ++A D G
Sbjct: 143 KLVYSILEGQPY-FSIEPETAIIKTALPNMDREA-KEEYLVVIQAKDMGGHSGGLSGTTT 200
Query: 578 LKIKLLDVNDNRPQFEKVDCLGHVPRNLPIGREIITLSAIDFDAGNII--SYRIVSGNED 635
L + L DVNDN P+F + VP ++ +G I + A D D G SY I+ G D
Sbjct: 201 LTVTLTDVNDNPPKFAQSLYHFSVPEDVVLGTAIGRVKANDQDIGENAQSSYDIIDG--D 258
Query: 636 GCFALDITS 644
G +ITS
Sbjct: 259 GTALFEITS 267
Score = 74.7 bits (182), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 72/218 (33%), Positives = 110/218 (50%), Gaps = 17/218 (7%)
Query: 881 TDLDLGDNAKVVYSLMTDTQD--FAVDSATGSLYVSASLDRERQDLYELKIRASDCDGRN 938
TDLD G + K+ Y L D F ++ TG ++ LDRE + Y L +A D +
Sbjct: 26 TDLDPG-SKKIKYILSGDGAGTIFQINDITGDIHAIKRLDREEKAEYTLTAQAVDFETNK 84
Query: 939 DMYTLHADALVRVTIDDINDNAPNFALPNYSVKVREDIPVGTVVAILSASDPD---LGQG 995
L + + + DINDNAP F Y V E +GT V ++A+D D G
Sbjct: 85 ---PLEPPSEFIIKVQDINDNAPEFLNGPYHATVPEMSILGTSVTNVTATDADDPVYGNS 141
Query: 996 GVVRYTIVSDNEADDVFSIDRLTGTIRVAKP-LDFEKRQVHSLVVRAKDNG--SPPLYSE 1052
+ Y+I+ E FSI+ T I+ A P +D E ++ + +V++AKD G S L
Sbjct: 142 AKLVYSIL---EGQPYFSIEPETAIIKTALPNMDREAKEEYLVVIQAKDMGGHSGGLSGT 198
Query: 1053 ATLIVEVSDVNENMNAPVFSDFVYQATVKENQPIGTSL 1090
TL V ++DVN+ N P F+ +Y +V E+ +GT++
Sbjct: 199 TTLTVTLTDVND--NPPKFAQSLYHFSVPEDVVLGTAI 234
Score = 56.2 bits (134), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 60/212 (28%), Positives = 95/212 (44%), Gaps = 17/212 (8%)
Query: 111 LNRERKDKYILHIKATITHRDGKKASYEETTCKVHVNVLDTNDLNPLFYPTEYEETVPED 170
L+RE K +Y L +A D + E + + V D ND P F Y TVPE
Sbjct: 63 LDREEKAEYTLTAQAV----DFETNKPLEPPSEFIIKVQDINDNAPEFLNGPYHATVPEM 118
Query: 171 LPLHTSILRVSAEDAD---LGRNGEIYYSFRDMNEQFSIHPTSGVVTLTRP-LKYTDRSV 226
L TS+ V+A DAD G + ++ YS + FSI P + ++ P + +
Sbjct: 119 SILGTSVTNVTATDADDPVYGNSAKLVYSILEGQPYFSIEPETAIIKTALPNMDREAKEE 178
Query: 227 HDLVVLGQDRGSVFKGGGKPSSAKLKIKVEQIN----LYGPEIYVQSLPDIVEQSYADIY 282
+ +V+ +D G GG + L + + +N + +Y S+P+ V A
Sbjct: 179 YLVVIQAKDMGG--HSGGLSGTTTLTVTLTDVNDNPPKFAQSLYHFSVPEDVVLGTA--I 234
Query: 283 AIVRVVDRDAGIHGEIASLDIVDGDPDGHFRI 314
V+ D+D G + + +S DI+DGD F I
Sbjct: 235 GRVKANDQDIGENAQ-SSYDIIDGDGTALFEI 265
Score = 50.1 bits (118), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 45/139 (32%), Positives = 68/139 (48%), Gaps = 14/139 (10%)
Query: 100 LIRTRTGNTDVLNRERKDKYILHIKATITHRD-GKKASYEETTCKVHVNVLDTNDLNPLF 158
+I+T N D RE K++Y++ I+A +D G + T + V + D ND P F
Sbjct: 163 IIKTALPNMD---REAKEEYLVVIQA----KDMGGHSGGLSGTTTLTVTLTDVNDNPPKF 215
Query: 159 YPTEYEETVPEDLPLHTSILRVSAEDADLGRNGEIYYSFRDMNEQFSIHPTS------GV 212
+ Y +VPED+ L T+I RV A D D+G N + Y D + TS GV
Sbjct: 216 AQSLYHFSVPEDVVLGTAIGRVKANDQDIGENAQSSYDIIDGDGTALFEITSDAQAQDGV 275
Query: 213 VTLTRPLKYTDRSVHDLVV 231
+ L +PL + + + L V
Sbjct: 276 IRLRKPLDFETKKSYTLKV 294
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 68/303 (22%), Positives = 121/303 (39%), Gaps = 65/303 (21%)
Query: 533 FEIDHFSGVIKTTQVLDYESMRREYILRVRASDWGLPYRRQTEMQLKIKLLDVNDNRPQF 592
F+I+ +G I + LD E + EY L +A D+ + + IK+ D+NDN P+F
Sbjct: 48 FQINDITGDIHAIKRLDREE-KAEYTLTAQAVDFETNKPLEPPSEFIIKVQDINDNAPEF 106
Query: 593 EKVDCLGHVPRNLPIGREIITLSAIDFD---AGNI--ISYRIVSGNEDGCFALDITSGVL 647
VP +G + ++A D D GN + Y I+ G F+++ + ++
Sbjct: 107 LNGPYHATVPEMSILGTSVTNVTATDADDPVYGNSAKLVYSILEGQP--YFSIEPETAII 164
Query: 648 SIACDLTDVRVNEREINVTATDSAHFSDVVRIRINLVSARRIPEPGKTLENDSGGFECKD 707
A D E + V + A+ D GG
Sbjct: 165 KTALPNMDREAKEEYLVV------------------IQAK-----------DMGGHSG-- 193
Query: 708 TGVARRLTEVLAAAEKNNLRSQSYQEEFAMMPSRYGENVHVPEFFSFPIELQVNESVPLK 767
G++ T + + N+ P ++ ++++ FS P E V L
Sbjct: 194 -GLSGTTTLTVTLTDVND------------NPPKFAQSLY---HFSVP------EDVVLG 231
Query: 768 STLTKIIARDRDLGYNGKLVFGISSGDNDSVFRIDPDS----GELKVVGYLDRERTSEYT 823
+ + ++ A D+D+G N + + I GD ++F I D+ G +++ LD E YT
Sbjct: 232 TAIGRVKANDQDIGENAQSSYDIIDGDGTALFEITSDAQAQDGVIRLRKPLDFETKKSYT 291
Query: 824 LNI 826
L +
Sbjct: 292 LKV 294
>pdb|3MVS|A Chain A, Structure Of The N-Terminus Of Cadherin 23
Length = 210
Score = 122 bits (305), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 78/210 (37%), Positives = 115/210 (54%), Gaps = 9/210 (4%)
Query: 751 FFS---FPIELQVNESVPLKSTLTKIIARDRDLGYNGKLVFGISSGDNDSVFRIDPDSGE 807
FF+ F L ++E P+ S++T+++ARD D N LVFG+S + F ++PD+G
Sbjct: 7 FFTNHFFDTYLLISEDTPVGSSVTQLLARDMD---NDPLVFGVSGEEASRFFAVEPDTGV 63
Query: 808 LKVVGYLDRERTSEYTLNITVYDLGKPQKSTSKMLPITILDVNDNPPKFEKSLASFRVTE 867
+ + LDRE SE+T+ +V D Q ++ + I + DVNDN P F S R+ E
Sbjct: 64 VWLRQPLDRETKSEFTVEFSVSDH---QGVITRKVNIQVGDVNDNAPTFHNQPYSVRIPE 120
Query: 868 NALNGTVIFKVNATDLDLGDNAKVVYSLMTDTQDFAVDSATGSLYVSASLDRERQDLYEL 927
N GT IF VNATD DLG V+YS + FA+DSA G + V LD E Y+L
Sbjct: 121 NTPVGTPIFIVNATDPDLGAGGSVLYSFQPPSPFFAIDSARGIVTVIQELDYEVTQAYQL 180
Query: 928 KIRASDCDGRNDMYTLHADALVRVTIDDIN 957
+ A+D D + TL A++ + D++
Sbjct: 181 TVNATDQDKTRPLSTLANLAIIITDMQDMD 210
Score = 95.1 bits (235), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 64/203 (31%), Positives = 110/203 (54%), Gaps = 16/203 (7%)
Query: 865 VTENALNGTVIFKVNATDLDLGDNAKVVYSLMTD--TQDFAVDSATGSLYVSASLDRERQ 922
++E+ G+ + ++ A D+D N +V+ + + ++ FAV+ TG +++ LDRE +
Sbjct: 19 ISEDTPVGSSVTQLLARDMD---NDPLVFGVSGEEASRFFAVEPDTGVVWLRQPLDRETK 75
Query: 923 DLYELKIRASDCDGRNDMYTLHADALVRVTIDDINDNAPNFALPNYSVKVREDIPVGTVV 982
+ ++ SD G V + + D+NDNAP F YSV++ E+ PVGT +
Sbjct: 76 SEFTVEFSVSDHQGV-------ITRKVNIQVGDVNDNAPTFHNQPYSVRIPENTPVGTPI 128
Query: 983 AILSASDPDLGQGGVVRYTIVSDNEADDVFSIDRLTGTIRVAKPLDFEKRQVHSLVVRAK 1042
I++A+DPDLG GG V Y+ F+ID G + V + LD+E Q + L V A
Sbjct: 129 FIVNATDPDLGAGGSVLYSF---QPPSPFFAIDSARGIVTVIQELDYEVTQAYQLTVNAT 185
Query: 1043 D-NGSPPLYSEATLIVEVSDVNE 1064
D + + PL + A L + ++D+ +
Sbjct: 186 DQDKTRPLSTLANLAIIITDMQD 208
Score = 85.9 bits (211), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 66/213 (30%), Positives = 95/213 (44%), Gaps = 12/213 (5%)
Query: 377 PVFDREIYE--VDVPETTPVNTPIIRLKVSDADDGKNAQVFLEIVGGNEGGEFNINPETG 434
P F ++ + + E TPV + + +L D D N + + G F + P+TG
Sbjct: 6 PFFTNHFFDTYLLISEDTPVGSSVTQLLARDMD---NDPLVFGVSGEEASRFFAVEPDTG 62
Query: 435 MLYTAVTLDAEDKAFYTLTVSAIDQGNAGTRKQSAAKVKVNIVDTNDNDPLFDSPEMEVS 494
+++ LD E K+ +T+ S D TRK V + + D NDN P F + V
Sbjct: 63 VVWLRQPLDRETKSEFTVEFSVSDHQGVITRK-----VNIQVGDVNDNAPTFHNQPYSVR 117
Query: 495 INENEPAGTSVIKVTAKDKDSGENAYISYSIANLKPVPFEIDHFSGVIKTTQVLDYESMR 554
I EN P GT + V A D D G + YS P F ID G++ Q LDYE +
Sbjct: 118 IPENTPVGTPIFIVNATDPDLGAGGSVLYSFQPPSPF-FAIDSARGIVTVIQELDYE-VT 175
Query: 555 REYILRVRASDWGLPYRRQTEMQLKIKLLDVND 587
+ Y L V A+D T L I + D+ D
Sbjct: 176 QAYQLTVNATDQDKTRPLSTLANLAIIITDMQD 208
Score = 65.5 bits (158), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 47/162 (29%), Positives = 74/162 (45%), Gaps = 18/162 (11%)
Query: 75 FKISSGDRDKFFKAEERLVGDFWFLLIRTRTGNTDVLNRERKDKYILHIKATITHRDGKK 134
F +S + +FF E G W L+RE K ++ ++ +++ G
Sbjct: 44 FGVSGEEASRFFAVEPD-TGVVWL---------RQPLDRETKSEFT--VEFSVSDHQGV- 90
Query: 135 ASYEETTCKVHVNVLDTNDLNPLFYPTEYEETVPEDLPLHTSILRVSAEDADLGRNGEIY 194
T KV++ V D ND P F+ Y +PE+ P+ T I V+A D DLG G +
Sbjct: 91 -----ITRKVNIQVGDVNDNAPTFHNQPYSVRIPENTPVGTPIFIVNATDPDLGAGGSVL 145
Query: 195 YSFRDMNEQFSIHPTSGVVTLTRPLKYTDRSVHDLVVLGQDR 236
YSF+ + F+I G+VT+ + L Y + L V D+
Sbjct: 146 YSFQPPSPFFAIDSARGIVTVIQELDYEVTQAYQLTVNATDQ 187
Score = 58.2 bits (139), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 51/183 (27%), Positives = 84/183 (45%), Gaps = 23/183 (12%)
Query: 495 INENEPAGTSVIKVTAKDKD--------SGENAYISYSIANLKPVPFEIDHFSGVIKTTQ 546
I+E+ P G+SV ++ A+D D SGE A +++ E D +GV+ Q
Sbjct: 19 ISEDTPVGSSVTQLLARDMDNDPLVFGVSGEEASRFFAV--------EPD--TGVVWLRQ 68
Query: 547 VLDYESMRREYILRVRASDWGLPYRRQTEMQLKIKLLDVNDNRPQFEKVDCLGHVPRNLP 606
LD E+ + E+ + SD ++ ++ I++ DVNDN P F +P N P
Sbjct: 69 PLDRET-KSEFTVEFSVSD----HQGVITRKVNIQVGDVNDNAPTFHNQPYSVRIPENTP 123
Query: 607 IGREIITLSAIDFDAGNIISYRIVSGNEDGCFALDITSGVLSIACDLTDVRVNEREINVT 666
+G I ++A D D G S FA+D G++++ +L ++ V
Sbjct: 124 VGTPIFIVNATDPDLGAGGSVLYSFQPPSPFFAIDSARGIVTVIQELDYEVTQAYQLTVN 183
Query: 667 ATD 669
ATD
Sbjct: 184 ATD 186
Score = 56.2 bits (134), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 41/122 (33%), Positives = 56/122 (45%), Gaps = 5/122 (4%)
Query: 363 KATQVHLVDLNDNKPVFDREIYEVDVPETTPVNTPIIRLKVSDADDGKNAQVFLEIVGGN 422
+ + + D+NDN P F + Y V +PE TPV TPI + +D D G V +
Sbjct: 93 RKVNIQVGDVNDNAPTFHNQPYSVRIPENTPVGTPIFIVNATDPDLGAGGSVLYSFQPPS 152
Query: 423 EGGEFNINPETGMLYTAVTLDAEDKAFYTLTVSAIDQGNAGTRKQSA-AKVKVNIVDTND 481
F I+ G++ LD E Y LTV+A DQ TR S A + + I D D
Sbjct: 153 PF--FAIDSARGIVTVIQELDYEVTQAYQLTVNATDQDK--TRPLSTLANLAIIITDMQD 208
Query: 482 ND 483
D
Sbjct: 209 MD 210
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 58/122 (47%), Gaps = 15/122 (12%)
Query: 972 VREDIPVGTVVAILSASDPD---LGQGGVVRYTIVSDNEADDVFSIDRLTGTIRVAKPLD 1028
+ ED PVG+ V L A D D L G VS EA F+++ TG + + +PLD
Sbjct: 19 ISEDTPVGSSVTQLLARDMDNDPLVFG-------VSGEEASRFFAVEPDTGVVWLRQPLD 71
Query: 1029 FEKRQVHSLVVRAKDNGSPPLYSEATLIVEVSDVNENMNAPVFSDFVYQATVKENQPIGT 1088
E + ++ D+ + ++V DVN+N AP F + Y + EN P+GT
Sbjct: 72 RETKSEFTVEFSVSDHQG---VITRKVNIQVGDVNDN--APTFHNQPYSVRIPENTPVGT 126
Query: 1089 SL 1090
+
Sbjct: 127 PI 128
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 50/108 (46%), Gaps = 3/108 (2%)
Query: 745 NVHVPEFFSFPIELQVNESVPLKSTLTKIIARDRDLGYNGKLVFGISSGDNDSVFRIDPD 804
N + P F + P +++ E+ P+ + + + A D DLG G +++ F ID
Sbjct: 103 NDNAPTFHNQPYSVRIPENTPVGTPIFIVNATDPDLGAGGSVLYSFQPP--SPFFAIDSA 160
Query: 805 SGELKVVGYLDRERTSEYTLNITVYDLGKPQK-STSKMLPITILDVND 851
G + V+ LD E T Y L + D K + ST L I I D+ D
Sbjct: 161 RGIVTVIQELDYEVTQAYQLTVNATDQDKTRPLSTLANLAIIITDMQD 208
>pdb|2WCP|A Chain A, Crystal Structure Of Mouse Cadherin-23 Ec1-2
pdb|2WHV|A Chain A, Crystal Structure Of Mouse Cadherin-23 Ec1-2 (all Cation
Binding Sites Occupied By Calcium)
pdb|4APX|A Chain A, Crystal Structure Of Mouse Cadherin-23 Ec1-2 And
Protocadherin-15 Ec1-2 Form I
pdb|4AQ8|A Chain A, Crystal Structure Of Mouse Cadherin-23 Ec1-2 And
Protocadherin-15 Ec1-2 Form Ii
pdb|4AQ8|B Chain B, Crystal Structure Of Mouse Cadherin-23 Ec1-2 And
Protocadherin-15 Ec1-2 Form Ii
pdb|4AXW|A Chain A, Crystal Structure Of Mouse Cadherin-23 Ec1-2 And
Protocadherin-15 Ec1-2, Form I 2.2a
Length = 214
Score = 121 bits (303), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 77/202 (38%), Positives = 111/202 (54%), Gaps = 9/202 (4%)
Query: 751 FFS---FPIELQVNESVPLKSTLTKIIARDRDLGYNGKLVFGISSGDNDSVFRIDPDSGE 807
FF+ F L ++E P+ S++T+++ARD D N LVFG+S + F ++PD+G
Sbjct: 8 FFTNHFFDTYLLISEDTPVGSSVTQLLARDMD---NDPLVFGVSGEEASRFFAVEPDTGV 64
Query: 808 LKVVGYLDRERTSEYTLNITVYDLGKPQKSTSKMLPITILDVNDNPPKFEKSLASFRVTE 867
+ + LDRE SE+T+ +V D Q ++ + I + DVNDN P F S R+ E
Sbjct: 65 VWLRQPLDRETKSEFTVEFSVSDH---QGVITRKVNIQVGDVNDNAPTFHNQPYSVRIPE 121
Query: 868 NALNGTVIFKVNATDLDLGDNAKVVYSLMTDTQDFAVDSATGSLYVSASLDRERQDLYEL 927
N GT IF VNATD DLG V+YS + FA+DSA G + V LD E Y+L
Sbjct: 122 NTPVGTPIFIVNATDPDLGAGGSVLYSFQPPSPFFAIDSARGIVTVIQELDYEVTQAYQL 181
Query: 928 KIRASDCDGRNDMYTLHADALV 949
+ A+D D + TL A++
Sbjct: 182 TVNATDQDKTRPLSTLANLAII 203
Score = 95.1 bits (235), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 64/201 (31%), Positives = 109/201 (54%), Gaps = 16/201 (7%)
Query: 865 VTENALNGTVIFKVNATDLDLGDNAKVVYSLMTD--TQDFAVDSATGSLYVSASLDRERQ 922
++E+ G+ + ++ A D+D N +V+ + + ++ FAV+ TG +++ LDRE +
Sbjct: 20 ISEDTPVGSSVTQLLARDMD---NDPLVFGVSGEEASRFFAVEPDTGVVWLRQPLDRETK 76
Query: 923 DLYELKIRASDCDGRNDMYTLHADALVRVTIDDINDNAPNFALPNYSVKVREDIPVGTVV 982
+ ++ SD G V + + D+NDNAP F YSV++ E+ PVGT +
Sbjct: 77 SEFTVEFSVSDHQGV-------ITRKVNIQVGDVNDNAPTFHNQPYSVRIPENTPVGTPI 129
Query: 983 AILSASDPDLGQGGVVRYTIVSDNEADDVFSIDRLTGTIRVAKPLDFEKRQVHSLVVRAK 1042
I++A+DPDLG GG V Y+ F+ID G + V + LD+E Q + L V A
Sbjct: 130 FIVNATDPDLGAGGSVLYSF---QPPSPFFAIDSARGIVTVIQELDYEVTQAYQLTVNAT 186
Query: 1043 D-NGSPPLYSEATLIVEVSDV 1062
D + + PL + A L + ++D+
Sbjct: 187 DQDKTRPLSTLANLAIIITDL 207
Score = 83.6 bits (205), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 61/191 (31%), Positives = 88/191 (46%), Gaps = 12/191 (6%)
Query: 377 PVFDREIYE--VDVPETTPVNTPIIRLKVSDADDGKNAQVFLEIVGGNEGGEFNINPETG 434
P F ++ + + E TPV + + +L D D N + + G F + P+TG
Sbjct: 7 PFFTNHFFDTYLLISEDTPVGSSVTQLLARDMD---NDPLVFGVSGEEASRFFAVEPDTG 63
Query: 435 MLYTAVTLDAEDKAFYTLTVSAIDQGNAGTRKQSAAKVKVNIVDTNDNDPLFDSPEMEVS 494
+++ LD E K+ +T+ S D TRK V + + D NDN P F + V
Sbjct: 64 VVWLRQPLDRETKSEFTVEFSVSDHQGVITRK-----VNIQVGDVNDNAPTFHNQPYSVR 118
Query: 495 INENEPAGTSVIKVTAKDKDSGENAYISYSIANLKPVPFEIDHFSGVIKTTQVLDYESMR 554
I EN P GT + V A D D G + YS P F ID G++ Q LDYE +
Sbjct: 119 IPENTPVGTPIFIVNATDPDLGAGGSVLYSFQPPSPF-FAIDSARGIVTVIQELDYE-VT 176
Query: 555 REYILRVRASD 565
+ Y L V A+D
Sbjct: 177 QAYQLTVNATD 187
Score = 65.5 bits (158), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 47/162 (29%), Positives = 74/162 (45%), Gaps = 18/162 (11%)
Query: 75 FKISSGDRDKFFKAEERLVGDFWFLLIRTRTGNTDVLNRERKDKYILHIKATITHRDGKK 134
F +S + +FF E G W L+RE K ++ ++ +++ G
Sbjct: 45 FGVSGEEASRFFAVEPD-TGVVWL---------RQPLDRETKSEFT--VEFSVSDHQGV- 91
Query: 135 ASYEETTCKVHVNVLDTNDLNPLFYPTEYEETVPEDLPLHTSILRVSAEDADLGRNGEIY 194
T KV++ V D ND P F+ Y +PE+ P+ T I V+A D DLG G +
Sbjct: 92 -----ITRKVNIQVGDVNDNAPTFHNQPYSVRIPENTPVGTPIFIVNATDPDLGAGGSVL 146
Query: 195 YSFRDMNEQFSIHPTSGVVTLTRPLKYTDRSVHDLVVLGQDR 236
YSF+ + F+I G+VT+ + L Y + L V D+
Sbjct: 147 YSFQPPSPFFAIDSARGIVTVIQELDYEVTQAYQLTVNATDQ 188
Score = 57.8 bits (138), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 51/183 (27%), Positives = 84/183 (45%), Gaps = 23/183 (12%)
Query: 495 INENEPAGTSVIKVTAKDKD--------SGENAYISYSIANLKPVPFEIDHFSGVIKTTQ 546
I+E+ P G+SV ++ A+D D SGE A +++ E D +GV+ Q
Sbjct: 20 ISEDTPVGSSVTQLLARDMDNDPLVFGVSGEEASRFFAV--------EPD--TGVVWLRQ 69
Query: 547 VLDYESMRREYILRVRASDWGLPYRRQTEMQLKIKLLDVNDNRPQFEKVDCLGHVPRNLP 606
LD E+ + E+ + SD ++ ++ I++ DVNDN P F +P N P
Sbjct: 70 PLDRET-KSEFTVEFSVSD----HQGVITRKVNIQVGDVNDNAPTFHNQPYSVRIPENTP 124
Query: 607 IGREIITLSAIDFDAGNIISYRIVSGNEDGCFALDITSGVLSIACDLTDVRVNEREINVT 666
+G I ++A D D G S FA+D G++++ +L ++ V
Sbjct: 125 VGTPIFIVNATDPDLGAGGSVLYSFQPPSPFFAIDSARGIVTVIQELDYEVTQAYQLTVN 184
Query: 667 ATD 669
ATD
Sbjct: 185 ATD 187
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 46/97 (47%), Gaps = 2/97 (2%)
Query: 363 KATQVHLVDLNDNKPVFDREIYEVDVPETTPVNTPIIRLKVSDADDGKNAQVFLEIVGGN 422
+ + + D+NDN P F + Y V +PE TPV TPI + +D D G V +
Sbjct: 94 RKVNIQVGDVNDNAPTFHNQPYSVRIPENTPVGTPIFIVNATDPDLGAGGSVLYSFQPPS 153
Query: 423 EGGEFNINPETGMLYTAVTLDAEDKAFYTLTVSAIDQ 459
F I+ G++ LD E Y LTV+A DQ
Sbjct: 154 PF--FAIDSARGIVTVIQELDYEVTQAYQLTVNATDQ 188
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 58/122 (47%), Gaps = 15/122 (12%)
Query: 972 VREDIPVGTVVAILSASDPD---LGQGGVVRYTIVSDNEADDVFSIDRLTGTIRVAKPLD 1028
+ ED PVG+ V L A D D L G VS EA F+++ TG + + +PLD
Sbjct: 20 ISEDTPVGSSVTQLLARDMDNDPLVFG-------VSGEEASRFFAVEPDTGVVWLRQPLD 72
Query: 1029 FEKRQVHSLVVRAKDNGSPPLYSEATLIVEVSDVNENMNAPVFSDFVYQATVKENQPIGT 1088
E + ++ D+ + ++V DVN+N AP F + Y + EN P+GT
Sbjct: 73 RETKSEFTVEFSVSDHQG---VITRKVNIQVGDVNDN--APTFHNQPYSVRIPENTPVGT 127
Query: 1089 SL 1090
+
Sbjct: 128 PI 129
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 49/106 (46%), Gaps = 3/106 (2%)
Query: 745 NVHVPEFFSFPIELQVNESVPLKSTLTKIIARDRDLGYNGKLVFGISSGDNDSVFRIDPD 804
N + P F + P +++ E+ P+ + + + A D DLG G +++ F ID
Sbjct: 104 NDNAPTFHNQPYSVRIPENTPVGTPIFIVNATDPDLGAGGSVLYSFQPP--SPFFAIDSA 161
Query: 805 SGELKVVGYLDRERTSEYTLNITVYDLGKPQK-STSKMLPITILDV 849
G + V+ LD E T Y L + D K + ST L I I D+
Sbjct: 162 RGIVTVIQELDYEVTQAYQLTVNATDQDKTRPLSTLANLAIIITDL 207
>pdb|4AQE|A Chain A, Crystal Structure Of Deafness Associated Mutant Mouse
Cadherin-23 Ec1-2s70p And Protocadherin-15 Ec1-2 Form I
Length = 214
Score = 119 bits (299), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 76/202 (37%), Positives = 110/202 (54%), Gaps = 9/202 (4%)
Query: 751 FFS---FPIELQVNESVPLKSTLTKIIARDRDLGYNGKLVFGISSGDNDSVFRIDPDSGE 807
FF+ F L ++E P+ S++T+++ARD D N LVFG+ + F ++PD+G
Sbjct: 8 FFTNHFFDTYLLISEDTPVGSSVTQLLARDMD---NDPLVFGVPGEEASRFFAVEPDTGV 64
Query: 808 LKVVGYLDRERTSEYTLNITVYDLGKPQKSTSKMLPITILDVNDNPPKFEKSLASFRVTE 867
+ + LDRE SE+T+ +V D Q ++ + I + DVNDN P F S R+ E
Sbjct: 65 VWLRQPLDRETKSEFTVEFSVSDH---QGVITRKVNIQVGDVNDNAPTFHNQPYSVRIPE 121
Query: 868 NALNGTVIFKVNATDLDLGDNAKVVYSLMTDTQDFAVDSATGSLYVSASLDRERQDLYEL 927
N GT IF VNATD DLG V+YS + FA+DSA G + V LD E Y+L
Sbjct: 122 NTPVGTPIFIVNATDPDLGAGGSVLYSFQPPSPFFAIDSARGIVTVIQELDYEVTQAYQL 181
Query: 928 KIRASDCDGRNDMYTLHADALV 949
+ A+D D + TL A++
Sbjct: 182 TVNATDQDKTRPLSTLANLAII 203
Score = 94.7 bits (234), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 64/201 (31%), Positives = 109/201 (54%), Gaps = 16/201 (7%)
Query: 865 VTENALNGTVIFKVNATDLDLGDNAKVVYSLMTD--TQDFAVDSATGSLYVSASLDRERQ 922
++E+ G+ + ++ A D+D N +V+ + + ++ FAV+ TG +++ LDRE +
Sbjct: 20 ISEDTPVGSSVTQLLARDMD---NDPLVFGVPGEEASRFFAVEPDTGVVWLRQPLDRETK 76
Query: 923 DLYELKIRASDCDGRNDMYTLHADALVRVTIDDINDNAPNFALPNYSVKVREDIPVGTVV 982
+ ++ SD G V + + D+NDNAP F YSV++ E+ PVGT +
Sbjct: 77 SEFTVEFSVSDHQGV-------ITRKVNIQVGDVNDNAPTFHNQPYSVRIPENTPVGTPI 129
Query: 983 AILSASDPDLGQGGVVRYTIVSDNEADDVFSIDRLTGTIRVAKPLDFEKRQVHSLVVRAK 1042
I++A+DPDLG GG V Y+ F+ID G + V + LD+E Q + L V A
Sbjct: 130 FIVNATDPDLGAGGSVLYSF---QPPSPFFAIDSARGIVTVIQELDYEVTQAYQLTVNAT 186
Query: 1043 D-NGSPPLYSEATLIVEVSDV 1062
D + + PL + A L + ++D+
Sbjct: 187 DQDKTRPLSTLANLAIIITDL 207
Score = 83.6 bits (205), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 61/191 (31%), Positives = 88/191 (46%), Gaps = 12/191 (6%)
Query: 377 PVFDREIYE--VDVPETTPVNTPIIRLKVSDADDGKNAQVFLEIVGGNEGGEFNINPETG 434
P F ++ + + E TPV + + +L D D N + + G F + P+TG
Sbjct: 7 PFFTNHFFDTYLLISEDTPVGSSVTQLLARDMD---NDPLVFGVPGEEASRFFAVEPDTG 63
Query: 435 MLYTAVTLDAEDKAFYTLTVSAIDQGNAGTRKQSAAKVKVNIVDTNDNDPLFDSPEMEVS 494
+++ LD E K+ +T+ S D TRK V + + D NDN P F + V
Sbjct: 64 VVWLRQPLDRETKSEFTVEFSVSDHQGVITRK-----VNIQVGDVNDNAPTFHNQPYSVR 118
Query: 495 INENEPAGTSVIKVTAKDKDSGENAYISYSIANLKPVPFEIDHFSGVIKTTQVLDYESMR 554
I EN P GT + V A D D G + YS P F ID G++ Q LDYE +
Sbjct: 119 IPENTPVGTPIFIVNATDPDLGAGGSVLYSFQPPSPF-FAIDSARGIVTVIQELDYE-VT 176
Query: 555 REYILRVRASD 565
+ Y L V A+D
Sbjct: 177 QAYQLTVNATD 187
Score = 63.9 bits (154), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 40/126 (31%), Positives = 64/126 (50%), Gaps = 8/126 (6%)
Query: 111 LNRERKDKYILHIKATITHRDGKKASYEETTCKVHVNVLDTNDLNPLFYPTEYEETVPED 170
L+RE K ++ ++ +++ G T KV++ V D ND P F+ Y +PE+
Sbjct: 71 LDRETKSEFT--VEFSVSDHQGV------ITRKVNIQVGDVNDNAPTFHNQPYSVRIPEN 122
Query: 171 LPLHTSILRVSAEDADLGRNGEIYYSFRDMNEQFSIHPTSGVVTLTRPLKYTDRSVHDLV 230
P+ T I V+A D DLG G + YSF+ + F+I G+VT+ + L Y + L
Sbjct: 123 TPVGTPIFIVNATDPDLGAGGSVLYSFQPPSPFFAIDSARGIVTVIQELDYEVTQAYQLT 182
Query: 231 VLGQDR 236
V D+
Sbjct: 183 VNATDQ 188
Score = 56.6 bits (135), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 83/176 (47%), Gaps = 9/176 (5%)
Query: 495 INENEPAGTSVIKVTAKDKDSGENAYISYSIANLKPVPF-EIDHFSGVIKTTQVLDYESM 553
I+E+ P G+SV ++ A+D D N + + + + F ++ +GV+ Q LD E+
Sbjct: 20 ISEDTPVGSSVTQLLARDMD---NDPLVFGVPGEEASRFFAVEPDTGVVWLRQPLDRET- 75
Query: 554 RREYILRVRASDWGLPYRRQTEMQLKIKLLDVNDNRPQFEKVDCLGHVPRNLPIGREIIT 613
+ E+ + SD ++ ++ I++ DVNDN P F +P N P+G I
Sbjct: 76 KSEFTVEFSVSD----HQGVITRKVNIQVGDVNDNAPTFHNQPYSVRIPENTPVGTPIFI 131
Query: 614 LSAIDFDAGNIISYRIVSGNEDGCFALDITSGVLSIACDLTDVRVNEREINVTATD 669
++A D D G S FA+D G++++ +L ++ V ATD
Sbjct: 132 VNATDPDLGAGGSVLYSFQPPSPFFAIDSARGIVTVIQELDYEVTQAYQLTVNATD 187
Score = 53.9 bits (128), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 46/97 (47%), Gaps = 2/97 (2%)
Query: 363 KATQVHLVDLNDNKPVFDREIYEVDVPETTPVNTPIIRLKVSDADDGKNAQVFLEIVGGN 422
+ + + D+NDN P F + Y V +PE TPV TPI + +D D G V +
Sbjct: 94 RKVNIQVGDVNDNAPTFHNQPYSVRIPENTPVGTPIFIVNATDPDLGAGGSVLYSFQPPS 153
Query: 423 EGGEFNINPETGMLYTAVTLDAEDKAFYTLTVSAIDQ 459
F I+ G++ LD E Y LTV+A DQ
Sbjct: 154 PF--FAIDSARGIVTVIQELDYEVTQAYQLTVNATDQ 188
Score = 43.5 bits (101), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 57/122 (46%), Gaps = 15/122 (12%)
Query: 972 VREDIPVGTVVAILSASDPD---LGQGGVVRYTIVSDNEADDVFSIDRLTGTIRVAKPLD 1028
+ ED PVG+ V L A D D L G V EA F+++ TG + + +PLD
Sbjct: 20 ISEDTPVGSSVTQLLARDMDNDPLVFG-------VPGEEASRFFAVEPDTGVVWLRQPLD 72
Query: 1029 FEKRQVHSLVVRAKDNGSPPLYSEATLIVEVSDVNENMNAPVFSDFVYQATVKENQPIGT 1088
E + ++ D+ + ++V DVN+N AP F + Y + EN P+GT
Sbjct: 73 RETKSEFTVEFSVSDHQG---VITRKVNIQVGDVNDN--APTFHNQPYSVRIPENTPVGT 127
Query: 1089 SL 1090
+
Sbjct: 128 PI 129
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 49/106 (46%), Gaps = 3/106 (2%)
Query: 745 NVHVPEFFSFPIELQVNESVPLKSTLTKIIARDRDLGYNGKLVFGISSGDNDSVFRIDPD 804
N + P F + P +++ E+ P+ + + + A D DLG G +++ F ID
Sbjct: 104 NDNAPTFHNQPYSVRIPENTPVGTPIFIVNATDPDLGAGGSVLYSFQPP--SPFFAIDSA 161
Query: 805 SGELKVVGYLDRERTSEYTLNITVYDLGKPQK-STSKMLPITILDV 849
G + V+ LD E T Y L + D K + ST L I I D+
Sbjct: 162 RGIVTVIQELDYEVTQAYQLTVNATDQDKTRPLSTLANLAIIITDL 207
Score = 30.0 bits (66), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 50/214 (23%), Positives = 81/214 (37%), Gaps = 34/214 (15%)
Query: 167 VPEDLPLHTSILRVSAEDAD-----LGRNGEIYYSFRDMNEQFSIHPTSGVVTLTRPLKY 221
+ ED P+ +S+ ++ A D D G GE F F++ P +GVV L +PL
Sbjct: 20 ISEDTPVGSSVTQLLARDMDNDPLVFGVPGEEASRF------FAVEPDTGVVWLRQPLDR 73
Query: 222 TDRSVHDLVVLGQDRGSVFKGGGKPSSAKLKIKVEQINLYGPEIYVQSLPDIVEQS--YA 279
+S + D V + K+ I+V +N P + Q + ++
Sbjct: 74 ETKSEFTVEFSVSDHQGVI-------TRKVNIQVGDVNDNAPTFHNQPYSVRIPENTPVG 126
Query: 280 DIYAIVRVVDRDAGIHGEIASLDIVDGDPDGHFRIVPTKIDPGTKKKEYNIVVLKLLDRE 339
IV D D G G + + P F + + V++ LD E
Sbjct: 127 TPIFIVNATDPDLGAGGSV----LYSFQPPSPFFAI--------DSARGIVTVIQELDYE 174
Query: 340 IAPLGYNLTLRAVDK-GTPPRETYKATQVHLVDL 372
+ Y LT+ A D+ T P T + + DL
Sbjct: 175 VT-QAYQLTVNATDQDKTRPLSTLANLAIIITDL 207
>pdb|2WD0|A Chain A, Crystal Structure Of Nonsyndromic Deafness (Dfnb12)
Associated Mutant D124g Of Mouse Cadherin-23 Ec1-2
pdb|2WD0|C Chain C, Crystal Structure Of Nonsyndromic Deafness (Dfnb12)
Associated Mutant D124g Of Mouse Cadherin-23 Ec1-2
pdb|4AQA|A Chain A, Crystal Structure Of Deafness Associated Mutant Mouse
Cadherin-23 Ec1-2d124g And Protocadherin-15 Ec1-2 Form I
Length = 214
Score = 119 bits (297), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 76/202 (37%), Positives = 110/202 (54%), Gaps = 9/202 (4%)
Query: 751 FFS---FPIELQVNESVPLKSTLTKIIARDRDLGYNGKLVFGISSGDNDSVFRIDPDSGE 807
FF+ F L ++E P+ S++T+++ARD D N LVFG+S + F ++PD+G
Sbjct: 8 FFTNHFFDTYLLISEDTPVGSSVTQLLARDMD---NDPLVFGVSGEEASRFFAVEPDTGV 64
Query: 808 LKVVGYLDRERTSEYTLNITVYDLGKPQKSTSKMLPITILDVNDNPPKFEKSLASFRVTE 867
+ + LDRE SE+T+ +V D Q ++ + I + VNDN P F S R+ E
Sbjct: 65 VWLRQPLDRETKSEFTVEFSVSDH---QGVITRKVNIQVGGVNDNAPTFHNQPYSVRIPE 121
Query: 868 NALNGTVIFKVNATDLDLGDNAKVVYSLMTDTQDFAVDSATGSLYVSASLDRERQDLYEL 927
N GT IF VNATD DLG V+YS + FA+DSA G + V LD E Y+L
Sbjct: 122 NTPVGTPIFIVNATDPDLGAGGSVLYSFQPPSPFFAIDSARGIVTVIQELDYEVTQAYQL 181
Query: 928 KIRASDCDGRNDMYTLHADALV 949
+ A+D D + TL A++
Sbjct: 182 TVNATDQDKTRPLSTLANLAII 203
Score = 92.4 bits (228), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 63/201 (31%), Positives = 108/201 (53%), Gaps = 16/201 (7%)
Query: 865 VTENALNGTVIFKVNATDLDLGDNAKVVYSLMTD--TQDFAVDSATGSLYVSASLDRERQ 922
++E+ G+ + ++ A D+D N +V+ + + ++ FAV+ TG +++ LDRE +
Sbjct: 20 ISEDTPVGSSVTQLLARDMD---NDPLVFGVSGEEASRFFAVEPDTGVVWLRQPLDRETK 76
Query: 923 DLYELKIRASDCDGRNDMYTLHADALVRVTIDDINDNAPNFALPNYSVKVREDIPVGTVV 982
+ ++ SD G V + + +NDNAP F YSV++ E+ PVGT +
Sbjct: 77 SEFTVEFSVSDHQGV-------ITRKVNIQVGGVNDNAPTFHNQPYSVRIPENTPVGTPI 129
Query: 983 AILSASDPDLGQGGVVRYTIVSDNEADDVFSIDRLTGTIRVAKPLDFEKRQVHSLVVRAK 1042
I++A+DPDLG GG V Y+ F+ID G + V + LD+E Q + L V A
Sbjct: 130 FIVNATDPDLGAGGSVLYSF---QPPSPFFAIDSARGIVTVIQELDYEVTQAYQLTVNAT 186
Query: 1043 D-NGSPPLYSEATLIVEVSDV 1062
D + + PL + A L + ++D+
Sbjct: 187 DQDKTRPLSTLANLAIIITDL 207
Score = 81.3 bits (199), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 60/191 (31%), Positives = 87/191 (45%), Gaps = 12/191 (6%)
Query: 377 PVFDREIYE--VDVPETTPVNTPIIRLKVSDADDGKNAQVFLEIVGGNEGGEFNINPETG 434
P F ++ + + E TPV + + +L D D N + + G F + P+TG
Sbjct: 7 PFFTNHFFDTYLLISEDTPVGSSVTQLLARDMD---NDPLVFGVSGEEASRFFAVEPDTG 63
Query: 435 MLYTAVTLDAEDKAFYTLTVSAIDQGNAGTRKQSAAKVKVNIVDTNDNDPLFDSPEMEVS 494
+++ LD E K+ +T+ S D TRK V + + NDN P F + V
Sbjct: 64 VVWLRQPLDRETKSEFTVEFSVSDHQGVITRK-----VNIQVGGVNDNAPTFHNQPYSVR 118
Query: 495 INENEPAGTSVIKVTAKDKDSGENAYISYSIANLKPVPFEIDHFSGVIKTTQVLDYESMR 554
I EN P GT + V A D D G + YS P F ID G++ Q LDYE +
Sbjct: 119 IPENTPVGTPIFIVNATDPDLGAGGSVLYSFQPPSPF-FAIDSARGIVTVIQELDYE-VT 176
Query: 555 REYILRVRASD 565
+ Y L V A+D
Sbjct: 177 QAYQLTVNATD 187
Score = 63.2 bits (152), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 73/162 (45%), Gaps = 18/162 (11%)
Query: 75 FKISSGDRDKFFKAEERLVGDFWFLLIRTRTGNTDVLNRERKDKYILHIKATITHRDGKK 134
F +S + +FF E G W L+RE K ++ ++ +++ G
Sbjct: 45 FGVSGEEASRFFAVEPD-TGVVWL---------RQPLDRETKSEFT--VEFSVSDHQGV- 91
Query: 135 ASYEETTCKVHVNVLDTNDLNPLFYPTEYEETVPEDLPLHTSILRVSAEDADLGRNGEIY 194
T KV++ V ND P F+ Y +PE+ P+ T I V+A D DLG G +
Sbjct: 92 -----ITRKVNIQVGGVNDNAPTFHNQPYSVRIPENTPVGTPIFIVNATDPDLGAGGSVL 146
Query: 195 YSFRDMNEQFSIHPTSGVVTLTRPLKYTDRSVHDLVVLGQDR 236
YSF+ + F+I G+VT+ + L Y + L V D+
Sbjct: 147 YSFQPPSPFFAIDSARGIVTVIQELDYEVTQAYQLTVNATDQ 188
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/183 (27%), Positives = 83/183 (45%), Gaps = 23/183 (12%)
Query: 495 INENEPAGTSVIKVTAKDKD--------SGENAYISYSIANLKPVPFEIDHFSGVIKTTQ 546
I+E+ P G+SV ++ A+D D SGE A +++ E D +GV+ Q
Sbjct: 20 ISEDTPVGSSVTQLLARDMDNDPLVFGVSGEEASRFFAV--------EPD--TGVVWLRQ 69
Query: 547 VLDYESMRREYILRVRASDWGLPYRRQTEMQLKIKLLDVNDNRPQFEKVDCLGHVPRNLP 606
LD E+ + E+ + SD ++ ++ I++ VNDN P F +P N P
Sbjct: 70 PLDRET-KSEFTVEFSVSD----HQGVITRKVNIQVGGVNDNAPTFHNQPYSVRIPENTP 124
Query: 607 IGREIITLSAIDFDAGNIISYRIVSGNEDGCFALDITSGVLSIACDLTDVRVNEREINVT 666
+G I ++A D D G S FA+D G++++ +L ++ V
Sbjct: 125 VGTPIFIVNATDPDLGAGGSVLYSFQPPSPFFAIDSARGIVTVIQELDYEVTQAYQLTVN 184
Query: 667 ATD 669
ATD
Sbjct: 185 ATD 187
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 45/97 (46%), Gaps = 2/97 (2%)
Query: 363 KATQVHLVDLNDNKPVFDREIYEVDVPETTPVNTPIIRLKVSDADDGKNAQVFLEIVGGN 422
+ + + +NDN P F + Y V +PE TPV TPI + +D D G V +
Sbjct: 94 RKVNIQVGGVNDNAPTFHNQPYSVRIPENTPVGTPIFIVNATDPDLGAGGSVLYSFQPPS 153
Query: 423 EGGEFNINPETGMLYTAVTLDAEDKAFYTLTVSAIDQ 459
F I+ G++ LD E Y LTV+A DQ
Sbjct: 154 PF--FAIDSARGIVTVIQELDYEVTQAYQLTVNATDQ 188
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 57/122 (46%), Gaps = 15/122 (12%)
Query: 972 VREDIPVGTVVAILSASDPD---LGQGGVVRYTIVSDNEADDVFSIDRLTGTIRVAKPLD 1028
+ ED PVG+ V L A D D L G VS EA F+++ TG + + +PLD
Sbjct: 20 ISEDTPVGSSVTQLLARDMDNDPLVFG-------VSGEEASRFFAVEPDTGVVWLRQPLD 72
Query: 1029 FEKRQVHSLVVRAKDNGSPPLYSEATLIVEVSDVNENMNAPVFSDFVYQATVKENQPIGT 1088
E + ++ D+ + ++V VN+N AP F + Y + EN P+GT
Sbjct: 73 RETKSEFTVEFSVSDHQG---VITRKVNIQVGGVNDN--APTFHNQPYSVRIPENTPVGT 127
Query: 1089 SL 1090
+
Sbjct: 128 PI 129
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 50/108 (46%), Gaps = 3/108 (2%)
Query: 743 GENVHVPEFFSFPIELQVNESVPLKSTLTKIIARDRDLGYNGKLVFGISSGDNDSVFRID 802
G N + P F + P +++ E+ P+ + + + A D DLG G +++ F ID
Sbjct: 102 GVNDNAPTFHNQPYSVRIPENTPVGTPIFIVNATDPDLGAGGSVLYSFQPP--SPFFAID 159
Query: 803 PDSGELKVVGYLDRERTSEYTLNITVYDLGKPQK-STSKMLPITILDV 849
G + V+ LD E T Y L + D K + ST L I I D+
Sbjct: 160 SARGIVTVIQELDYEVTQAYQLTVNATDQDKTRPLSTLANLAIIITDL 207
>pdb|3Q2W|A Chain A, Crystal Structure Of Mouse N-Cadherin Ectodomain
Length = 559
Score = 113 bits (283), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 103/341 (30%), Positives = 158/341 (46%), Gaps = 41/341 (12%)
Query: 755 PIELQVNESVPLKSTLTKIIA-RDRDLGYNGKLVFGISSGDNDSVFRIDPDSGELKVVGY 813
PI L N P L +I + RD++L + + +F I+P SG+L V
Sbjct: 6 PINLPENSRGPFPQELVRIRSDRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKP 65
Query: 814 LDRERTSEYTLNITVYDLGKPQKSTSKMLPITILDVNDNPPKFEKSLASFRVTENALNGT 873
LDRE + + L D+ Q + I ++D+NDN P+F + + V E + GT
Sbjct: 66 LDRELIARFHLRAHAVDINGNQVENPIDIVINVIDMNDNRPEFLHQVWNGSVPEGSKPGT 125
Query: 874 VIFKVNATDLDLGD--NAKVVYSLMTDTQD------FAVDSATGSLY-VSASLDRERQDL 924
+ V A D D + N + Y +++ F +++ TG + V+A LDRE+
Sbjct: 126 YVMTVTAIDADDPNALNGMLRYRILSQAPSTPSPNMFTINNETGDIITVAAGLDREKVQQ 185
Query: 925 YELKIRASDCDGRNDMYTLHADALVRVTIDDINDNAPNFALPNYSVKVREDIPVGTVVAI 984
Y L I+A+D +G N Y L A +T+ D+NDN P F + +V E+ V +VA
Sbjct: 186 YTLIIQATDMEG-NPTYGLSNTATAVITVTDVNDNPPEFTAMTFYGEVPENR-VDVIVAN 243
Query: 985 LSASDPDL-------------GQGGVVRYTIVSDNEADDVFSIDRLTGTIRVAKPLDFEK 1031
L+ +D D G R+ I++D ++D G + V KP+DFE
Sbjct: 244 LTVTDKDQPHTPAWNAAYRISGGDPTGRFAILTDPNSND--------GLVTVVKPIDFET 295
Query: 1032 RQVHSLVVRAKDNGSP-------PLYSEATLIVEVSDVNEN 1065
++ L V A +N P P S AT+ V V DVNEN
Sbjct: 296 NRMFVLTV-AAENQVPLAKGIQHPPQSTATVSVTVIDVNEN 335
Score = 95.9 bits (237), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 107/347 (30%), Positives = 161/347 (46%), Gaps = 40/347 (11%)
Query: 749 PEFFSFPIELQV-NESVPLKS-------TLTKIIARDRDLGYNGKLVFGI----SSGDND 796
PEF QV N SVP S T+T I A D + NG L + I S +
Sbjct: 106 PEFLH-----QVWNGSVPEGSKPGTYVMTVTAIDADDPN-ALNGMLRYRILSQAPSTPSP 159
Query: 797 SVFRIDPDSGEL-KVVGYLDRERTSEYTLNITVYDL-GKPQK--STSKMLPITILDVNDN 852
++F I+ ++G++ V LDRE+ +YTL I D+ G P S + IT+ DVNDN
Sbjct: 160 NMFTINNETGDIITVAAGLDREKVQQYTLIIQATDMEGNPTYGLSNTATAVITVTDVNDN 219
Query: 853 PPKFEKSLASFRVTENALNGTVIFKVNATDLDLGD----NAKVVYSLMTDTQDFAV---- 904
PP+F V EN ++ ++ + TD D NA S T FA+
Sbjct: 220 PPEFTAMTFYGEVPENRVD-VIVANLTVTDKDQPHTPAWNAAYRISGGDPTGRFAILTDP 278
Query: 905 DSATGSLYVSASLDRERQDLYELKIRASD--CDGRNDMYTLHADALVRVTIDDINDNAPN 962
+S G + V +D E ++ L + A + + + + A V VT+ D+N+N P
Sbjct: 279 NSNDGLVTVVKPIDFETNRMFVLTVAAENQVPLAKGIQHPPQSTATVSVTVIDVNEN-PY 337
Query: 963 FALPNYSVKVREDIPVGTVVAILSASDPDLGQGGVVRYTIVSDNEADDVFSIDRLTGTIR 1022
FA ++ E + GT++ L+A DPD +RYT +SD + ID + G I
Sbjct: 338 FAPNPKIIRQEEGLHAGTMLTTLTAQDPDRYMQQNIRYTKLSD--PANWLKIDPVNGQIT 395
Query: 1023 VAKPLDFE----KRQVHSLVVRAKDNGSPPLYSEATLIVEVSDVNEN 1065
LD E K +++ A DNG PP+ TL + + D+N+N
Sbjct: 396 TIAVLDRESPNVKNNIYNATFLASDNGIPPMSGTGTLQIYLLDINDN 442
Score = 85.9 bits (211), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 136/560 (24%), Positives = 234/560 (41%), Gaps = 90/560 (16%)
Query: 533 FEIDHFSGVIKTTQVLDYESMRREYILRVRASDWGLPYRRQTEMQLKIKLLDVNDNRPQF 592
F I+ SG + T+ LD E + R + LR A D + + + + I ++D+NDNRP+F
Sbjct: 51 FIINPISGQLSVTKPLDRELIAR-FHLRAHAVDING-NQVENPIDIVINVIDMNDNRPEF 108
Query: 593 EKVDCLGHVPRNLPIGREIITLSAIDFDAGN----IISYRIVSGNED----GCFALDITS 644
G VP G ++T++AID D N ++ YRI+S F ++ +
Sbjct: 109 LHQVWNGSVPEGSKPGTYVMTVTAIDADDPNALNGMLRYRILSQAPSTPSPNMFTINNET 168
Query: 645 G-VLSIACDLTDVRVNEREINVTATDSAHFSDVVRIRINLVSARRIPEPGKTLENDSGGF 703
G ++++A L +V + + + ATD
Sbjct: 169 GDIITVAAGLDREKVQQYTLIIQATD---------------------------------M 195
Query: 704 ECKDT-GVARRLTEVLAAAEKNNLRSQSYQEEFAMMPSRYGENVHVPEFFSFPIELQVNE 762
E T G++ T V+ + N+ EF M + YGE VPE N
Sbjct: 196 EGNPTYGLSNTATAVITVTDVND-----NPPEFTAM-TFYGE---VPE----------NR 236
Query: 763 SVPLKSTLTKIIARDRDLGYNGKLVFGISSGDNDSVFRI--DPDS--GELKVVGYLDRER 818
+ + LT + +D+ + IS GD F I DP+S G + VV +D E
Sbjct: 237 VDVIVANLT-VTDKDQPHTPAWNAAYRISGGDPTGRFAILTDPNSNDGLVTVVKPIDFET 295
Query: 819 TSEYTLNITVYD-------LGKPQKSTSKMLPITILDVNDNPPKFEKSLASFRVTENALN 871
+ L + + + P +ST+ + +T++DVN+NP F + R E
Sbjct: 296 NRMFVLTVAAENQVPLAKGIQHPPQSTATVS-VTVIDVNENP-YFAPNPKIIRQEEGLHA 353
Query: 872 GTVIFKVNATDLDLGDNAKVVYSLMTDTQDF-AVDSATGSLYVSASLDRE----RQDLYE 926
GT++ + A D D + Y+ ++D ++ +D G + A LDRE + ++Y
Sbjct: 354 GTMLTTLTAQDPDRYMQQNIRYTKLSDPANWLKIDPVNGQITTIAVLDRESPNVKNNIYN 413
Query: 927 LKIRASDCDGRNDMYTLHADALVRVTIDDINDNAPNFALPNYSVKVREDIPVGTVVAILS 986
ASD N + + +++ + DINDNAP LP + P + L
Sbjct: 414 ATFLASD----NGIPPMSGTGTLQIYLLDINDNAPQ-VLPQEAETCETPEPNSINITALD 468
Query: 987 ASDPDLGQGGVVRYTIVSDNEADDVFSIDRLTGTI-RVAKPLDFEKRQVHSLVVRAKDNG 1045
D D G +S ++I+RL G ++ + F + ++ + + D+G
Sbjct: 469 -YDIDPNAGPFAFDLPLSPVTIKRNWTINRLNGDFAQLNLKIKFLEAGIYEVPIIITDSG 527
Query: 1046 SPPLYSEATLIVEVSDVNEN 1065
+PP + + L V+V + N
Sbjct: 528 NPPKSNISILRVKVCQCDSN 547
Score = 84.3 bits (207), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 106/352 (30%), Positives = 151/352 (42%), Gaps = 46/352 (13%)
Query: 330 IVVLKLLDREIAPLGYNLTLRAVD-KGTPPRETYKATQ-----VHLVDLNDNKPVFDREI 383
I V LDRE Y L ++A D +G P TY + + + D+NDN P F
Sbjct: 172 ITVAAGLDREKV-QQYTLIIQATDMEGNP---TYGLSNTATAVITVTDVNDNPPEFTAMT 227
Query: 384 YEVDVPETTPVNTPIIRLKVSDADDGKNA--QVFLEIVGGNEGGEFNI----NPETGMLY 437
+ +VPE V+ + L V+D D I GG+ G F I N G++
Sbjct: 228 FYGEVPENR-VDVIVANLTVTDKDQPHTPAWNAAYRISGGDPTGRFAILTDPNSNDGLVT 286
Query: 438 TAVTLDAEDKAFYTLTVSAIDQ----GNAGTRKQSAAKVKVNIVDTNDNDPLFDSPEMEV 493
+D E + LTV+A +Q QS A V V ++D N+N P F +
Sbjct: 287 VVKPIDFETNRMFVLTVAAENQVPLAKGIQHPPQSTATVSVTVIDVNEN-PYFAPNPKII 345
Query: 494 SINENEPAGTSVIKVTAKDKDSGENAYISYSIANLKPVPFEIDHFSGVIKTTQVLDYESM 553
E AGT + +TA+D D I Y+ + +ID +G I T VLD ES
Sbjct: 346 RQEEGLHAGTMLTTLTAQDPDRYMQQNIRYTKLSDPANWLKIDPVNGQITTIAVLDRESP 405
Query: 554 RRE---YILRVRASDWGLPYRRQTEMQLKIKLLDVNDNRPQF---EKVDCLGHVPRNLPI 607
+ Y ASD G+P T L+I LLD+NDN PQ E C P +
Sbjct: 406 NVKNNIYNATFLASDNGIPPMSGTGT-LQIYLLDINDNAPQVLPQEAETCETPEPNS--- 461
Query: 608 GREIITLSAIDFDAGNIISYRIVSGNEDGCFALDITSGVLSIACDLTDVRVN 659
I ++A+D+D + N G FA D+ ++I + T R+N
Sbjct: 462 ----INITALDYD---------IDPNA-GPFAFDLPLSPVTIKRNWTINRLN 499
Score = 73.9 bits (180), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 86/310 (27%), Positives = 137/310 (44%), Gaps = 26/310 (8%)
Query: 332 VLKLLDREIAPLGYNLTLRAVDKGTPPRETYKATQVHLVDLNDNKPVFDREIYEVDVPET 391
V K LDRE+ ++L AVD E ++++D+NDN+P F +++ VPE
Sbjct: 62 VTKPLDRELI-ARFHLRAHAVDINGNQVENPIDIVINVIDMNDNRPEFLHQVWNGSVPEG 120
Query: 392 TPVNTPIIRLKVSDADDGKNA-------QVFLEIVGGNEGGEFNINPETGMLYT-AVTLD 443
+ T ++ + DADD NA ++ + F IN ETG + T A LD
Sbjct: 121 SKPGTYVMTVTAIDADD-PNALNGMLRYRILSQAPSTPSPNMFTINNETGDIITVAAGLD 179
Query: 444 AEDKAFYTLTVSAID-QGNAGTRKQSAAKVKVNIVDTNDNDPLFDSPEMEVSINENEPAG 502
E YTL + A D +GN + A + + D NDN P F + + EN
Sbjct: 180 REKVQQYTLIIQATDMEGNPTYGLSNTATAVITVTDVNDNPPEFTAMTFYGEVPENR-VD 238
Query: 503 TSVIKVTAKDKDSGENAY--ISYSIANLKPVP-FEI----DHFSGVIKTTQVLDYESMRR 555
V +T DKD +Y I+ P F I + G++ + +D+E+ R
Sbjct: 239 VIVANLTVTDKDQPHTPAWNAAYRISGGDPTGRFAILTDPNSNDGLVTVVKPIDFET-NR 297
Query: 556 EYILRVRASDW-----GLPYRRQTEMQLKIKLLDVNDNRPQFEKVDCLGHVPRNLPIGRE 610
++L V A + G+ + Q+ + + ++DVN+N P F + L G
Sbjct: 298 MFVLTVAAENQVPLAKGIQHPPQSTATVSVTVIDVNEN-PYFAPNPKIIRQEEGLHAGTM 356
Query: 611 IITLSAIDFD 620
+ TL+A D D
Sbjct: 357 LTTLTAQDPD 366
Score = 69.7 bits (169), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 96/393 (24%), Positives = 155/393 (39%), Gaps = 46/393 (11%)
Query: 111 LNRERKDKYILHIKATITHRDGKKASYEETTCKVHVNVLDTNDLNPLFYPTEYEETVPED 170
L+RE+ +Y L I+AT +G T + V D ND P F + VPE+
Sbjct: 178 LDREKVQQYTLIIQAT--DMEGNPTYGLSNTATAVITVTDVNDNPPEFTAMTFYGEVPEN 235
Query: 171 LPLHTSILRVSAEDADLGRNGEIYYSFR----DMNEQFSI--HPTS--GVVTLTRPLKYT 222
+ + ++ D D ++R D +F+I P S G+VT+ +P+ +
Sbjct: 236 R-VDVIVANLTVTDKDQPHTPAWNAAYRISGGDPTGRFAILTDPNSNDGLVTVVKPIDFE 294
Query: 223 DRSVHDLVVLGQDRGSVFKGGGKPSSAKLKIKVEQINLYGPEIYVQSLPDIVEQSYADIY 282
+ L V +++ + KG P + + V I D+ E Y
Sbjct: 295 TNRMFVLTVAAENQVPLAKGIQHPPQSTATVSVTVI-------------DVNENPY--FA 339
Query: 283 AIVRVVDRDAGIHGEIASLDIVDGDPDGHFR--IVPTKI-DPGTKKK----EYNIVVLKL 335
+++ ++ G+H + DPD + + I TK+ DP K I + +
Sbjct: 340 PNPKIIRQEEGLHAGTMLTTLTAQDPDRYMQQNIRYTKLSDPANWLKIDPVNGQITTIAV 399
Query: 336 LDREIAPLG---YNLTLRAVDKGTPPRETYKATQVHLVDLNDNKP-VFDREIYEVDVPET 391
LDRE + YN T A D G PP Q++L+D+NDN P V +E + PE
Sbjct: 400 LDRESPNVKNNIYNATFLASDNGIPPMSGTGTLQIYLLDINDNAPQVLPQEAETCETPEP 459
Query: 392 TPVNTPIIRLKVSDADDGKNAQVF---LEIVGGNEGGEFNINPETG-MLYTAVTLDAEDK 447
+N + D D NA F L + + IN G + + +
Sbjct: 460 NSIN-----ITALDYDIDPNAGPFAFDLPLSPVTIKRNWTINRLNGDFAQLNLKIKFLEA 514
Query: 448 AFYTLTVSAIDQGNAGTRKQSAAKVKVNIVDTN 480
Y + + D GN S +VKV D+N
Sbjct: 515 GIYEVPIIITDSGNPPKSNISILRVKVCQCDSN 547
Score = 53.9 bits (128), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 117/473 (24%), Positives = 184/473 (38%), Gaps = 58/473 (12%)
Query: 81 DRDKFFK---------AEERLVGDFWFLLIRTRTGNTDVLNRERKDKYILHIKATITHRD 131
DRDK A++ G F I + T L+RE ++ H++A +
Sbjct: 27 DRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKPLDRELIARF--HLRAHAVDIN 84
Query: 132 GKKASYEETTCKVHVNVLDTNDLNPLFYPTEYEETVPEDLPLHTSILRVSAEDAD--LGR 189
G + E + +NV+D ND P F + +VPE T ++ V+A DAD
Sbjct: 85 GNQV---ENPIDIVINVIDMNDNRPEFLHQVWNGSVPEGSKPGTYVMTVTAIDADDPNAL 141
Query: 190 NGEIYYSFRDMN------EQFSIHPTSG-VVTLTRPLKYTDRSVHDLVVLGQDRGSVFKG 242
NG + Y F+I+ +G ++T+ L + L++ D +G
Sbjct: 142 NGMLRYRILSQAPSTPSPNMFTINNETGDIITVAAGLDREKVQQYTLIIQATD----MEG 197
Query: 243 G---GKPSSAKLKIKVEQINLYGPEIYVQSLPDIVEQSYAD-IYAIVRVVDRD-AGIHGE 297
G ++A I V +N PE + V ++ D I A + V D+D
Sbjct: 198 NPTYGLSNTATAVITVTDVNDNPPEFTAMTFYGEVPENRVDVIVANLTVTDKDQPHTPAW 257
Query: 298 IASLDIVDGDPDGHFRIVPTKIDPGTKKKEYNIVVLKLLDREIAPLGYNLTLRA-----V 352
A+ I GDP G F I+ DP + + V+K +D E + + LT+ A +
Sbjct: 258 NAAYRISGGDPTGRFAIL---TDPNSNDGL--VTVVKPIDFETNRM-FVLTVAAENQVPL 311
Query: 353 DKGT--PPRETYKATQVHLVDLNDNKPVFDREIYEVDVPETTPVNTPIIRLKVSDADDGK 410
KG PP+ T + V ++D+N+N P F + E T + L D D
Sbjct: 312 AKGIQHPPQSTATVS-VTVIDVNEN-PYFAPNPKIIRQEEGLHAGTMLTTLTAQDPDRYM 369
Query: 411 NAQVFLEIVGGNEGGEFNINPETGMLYTAVTLDAED----KAFYTLTVSAIDQGNAGTRK 466
+ + + I+P G + T LD E Y T A D G
Sbjct: 370 QQNIRYTKL-SDPANWLKIDPVNGQITTIAVLDRESPNVKNNIYNATFLASDNGIP--PM 426
Query: 467 QSAAKVKVNIVDTNDNDPLFDSPEMEVSINENEPAGTSVIKVTAKDKDSGENA 519
+++ ++D NDN P E E E + I +TA D D NA
Sbjct: 427 SGTGTLQIYLLDINDNAPQVLPQEAETC----ETPEPNSINITALDYDIDPNA 475
>pdb|3Q2V|A Chain A, Crystal Structure Of Mouse E-Cadherin Ectodomain
pdb|3Q2V|B Chain B, Crystal Structure Of Mouse E-Cadherin Ectodomain
Length = 550
Score = 106 bits (264), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 99/309 (32%), Positives = 153/309 (49%), Gaps = 30/309 (9%)
Query: 755 PIELQVNESVPLKSTLTKIIA-RDRDLGYNGKLVFGISSGDND----SVFRIDPDSGELK 809
PI NE L +I + RD++ K+ + I+ D VF I+ ++G LK
Sbjct: 6 PISCPENEKGEFPKNLVQIKSNRDKET----KVFYSITGQGADKPPVGVFIIERETGWLK 61
Query: 810 VVGYLDRERTSEYTL-NITVYDLGKPQKSTSKMLPITILDVNDNPPKFEKSLASFRVTEN 868
V LDRE ++Y L + V G+ + +++ IT+ D NDN P+F + + V E
Sbjct: 62 VTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIV-ITVTDQNDNRPEFTQEVFEGSVAEG 120
Query: 869 ALNGTVIFKVNATDLD---LGDNAKVVYSLMTDTQD------FAVDSATGSLYV-SASLD 918
A+ GT + KV+ATD D NA + Y++++ + F V+ TG + V ++ LD
Sbjct: 121 AVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVLTSGLD 180
Query: 919 RERQDLYELKIRASDCDGRNDMYTLHADALVRVTIDDINDNAPNFALPNYSVKVREDIPV 978
RE Y L ++A+D G L A +T+ DINDNAP F Y +V E+ V
Sbjct: 181 RESYPTYTLVVQAADLQGEG----LSTTAKAVITVKDINDNAPVFNPSTYQGQVPEN-EV 235
Query: 979 GTVVAILSASDPDLGQGGVVR--YTIVSDNEADDVFSIDRLT--GTIRVAKPLDFEKRQV 1034
+A L +D D + YT+V+D + V D T G ++ AK LDFE +Q
Sbjct: 236 NARIATLKVTDDDAPNTPAWKAVYTVVNDPDQQFVVVTDPTTNDGILKTAKGLDFEAKQQ 295
Query: 1035 HSLVVRAKD 1043
+ L VR ++
Sbjct: 296 YILHVRVEN 304
Score = 82.4 bits (202), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 81/237 (34%), Positives = 107/237 (45%), Gaps = 24/237 (10%)
Query: 410 KNAQVFLEIVGGNEG----GEFNINPETGMLYTAVTLDAEDKAFYTLTVSAIDQGNAGTR 465
K +VF I G G F I ETG L LD E A Y L A+ G
Sbjct: 30 KETKVFYSITGQGADKPPVGVFIIERETGWLKVTQPLDREAIAKYILYSHAVSSN--GEA 87
Query: 466 KQSAAKVKVNIVDTNDNDPLFDSPEMEVSINENEPAGTSVIKVTAKDKDSGENAY---IS 522
+ ++ + + D NDN P F E S+ E GTSV+KV+A D D N Y I+
Sbjct: 88 VEDPMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIA 147
Query: 523 YSIANLKP-VP----FEIDHFSGVIKT-TQVLDYESMRREYILRVRASDW---GLPYRRQ 573
Y+I + P +P F ++ +GVI T LD ES Y L V+A+D GL
Sbjct: 148 YTIVSQDPELPHKNMFTVNRDTGVISVLTSGLDRESYPT-YTLVVQAADLQGEGL----S 202
Query: 574 TEMQLKIKLLDVNDNRPQFEKVDCLGHVPRNLPIGREIITLSAIDFDAGNIISYRIV 630
T + I + D+NDN P F G VP N + I TL D DA N +++ V
Sbjct: 203 TTAKAVITVKDINDNAPVFNPSTYQGQVPEN-EVNARIATLKVTDDDAPNTPAWKAV 258
Score = 80.1 bits (196), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 92/323 (28%), Positives = 137/323 (42%), Gaps = 23/323 (7%)
Query: 744 ENVHVPEFFSFPIELQVNESVPLKSTLTKIIARDRD---LGYNGKLVFGISSGD----ND 796
+N + PEF E V E +++ K+ A D D YN + + I S D +
Sbjct: 101 QNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHK 160
Query: 797 SVFRIDPDSGELKVV-GYLDRERTSEYTLNITVYDLGKPQKSTSKMLPITILDVNDNPPK 855
++F ++ D+G + V+ LDRE YTL + DL ST+ IT+ D+NDN P
Sbjct: 161 NMFTVNRDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGLSTTAKAVITVKDINDNAPV 220
Query: 856 FEKSLASFRVTENALNGTV-IFKVNATDLDLGDNAKVVYSLMTDT-QDFAV--DSAT--G 909
F S +V EN +N + KV D K VY+++ D Q F V D T G
Sbjct: 221 FNPSTYQGQVPENEVNARIATLKVTDDDAPNTPAWKAVYTVVNDPDQQFVVVTDPTTNDG 280
Query: 910 SLYVSASLDRERQDLYELKIRASDCDGRNDMYTLHADALVRVTIDDINDNAPNFALPNYS 969
L + LD E + Y L +R + + +L + AP F
Sbjct: 281 ILKTAKGLDFEAKQQYILHVRVENEEPFEG--SLVPSTATVTVDVVDVNEAPIFMPAERR 338
Query: 970 VKVREDIPVGTVVAILSASDPDLGQGGVVRYTIVSDNEADDVFSIDRLTGTIRVAKPLDF 1029
V+V ED VG + +A +PD + Y I D + I+ TG I +D
Sbjct: 339 VEVPEDFGVGQEITSYTAREPDTFMDQKITYRIWRDTA--NWLEINPETGAIFTRAEMDR 396
Query: 1030 E-----KRQVHSLVVRAKDNGSP 1047
E K + ++ A D+GSP
Sbjct: 397 EDAEHVKNSTYVALIIATDDGSP 419
Score = 79.3 bits (194), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 88/315 (27%), Positives = 140/315 (44%), Gaps = 22/315 (6%)
Query: 332 VLKLLDREIAPLGYNLTLRAVDKGTPPRETYKATQVHLVDLNDNKPVFDREIYEVDVPET 391
V + LDRE A Y L AV E + + D NDN+P F +E++E V E
Sbjct: 62 VTQPLDRE-AIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAEG 120
Query: 392 TPVNTPIIRLKVSDADD---GKNAQVFLEIVGGN----EGGEFNINPETGMLYTAVT-LD 443
T ++++ +DADD NA + IV + F +N +TG++ + LD
Sbjct: 121 AVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVLTSGLD 180
Query: 444 AEDKAFYTLTVSAIDQGNAGTRKQSAAKVKVNIVDTNDNDPLFDSPEMEVSINENE-PAG 502
E YTL V A D G + AK + + D NDN P+F+ + + ENE A
Sbjct: 181 RESYPTYTLVVQAADLQGEGL--STTAKAVITVKDINDNAPVFNPSTYQGQVPENEVNAR 238
Query: 503 TSVIKVTAKDKDSGENAYISYSIANLKPVPFEI----DHFSGVIKTTQVLDYESMRREYI 558
+ +KVT D + Y++ N F + G++KT + LD+E+ +++YI
Sbjct: 239 IATLKVTDDDAPNTPAWKAVYTVVNDPDQQFVVVTDPTTNDGILKTAKGLDFEA-KQQYI 297
Query: 559 LRVRASDWGLPYRRQ--TEMQLKIKLLDVNDNRPQFEKVDCLGHVPRNLPIGREIITLSA 616
L VR + P+ + + P F + VP + +G+EI + +A
Sbjct: 298 LHVRVEN-EEPFEGSLVPSTATVTVDVVDVNEAPIFMPAERRVEVPEDFGVGQEITSYTA 356
Query: 617 IDFDA--GNIISYRI 629
+ D I+YRI
Sbjct: 357 REPDTFMDQKITYRI 371
Score = 67.4 bits (163), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 110/399 (27%), Positives = 165/399 (41%), Gaps = 48/399 (12%)
Query: 88 AEERLVGDFWFLLIRTRTGN---TDVLNRERKDKYILHIKATITHRDGKKASYEETTCKV 144
A++ VG F +I TG T L+RE KYIL+ +H E ++
Sbjct: 43 ADKPPVGVF---IIERETGWLKVTQPLDREAIAKYILY-----SHAVSSNGEAVEDPMEI 94
Query: 145 HVNVLDTNDLNPLFYPTEYEETVPEDLPLHTSILRVSAEDAD---LGRNGEIYYSFRDMN 201
+ V D ND P F +E +V E TS+++VSA DAD N I Y+ +
Sbjct: 95 VITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQD 154
Query: 202 EQ------FSIHPTSGVVT-LTRPLKYTDRSVHDLVVLGQDRGSVFKGGGKPSSAKLKIK 254
+ F+++ +GV++ LT L + LVV D +G G ++AK I
Sbjct: 155 PELPHKNMFTVNRDTGVISVLTSGLDRESYPTYTLVVQAAD----LQGEGLSTTAKAVIT 210
Query: 255 VEQIN----LYGPEIYVQSLPDIVEQSYADIYAIVRVVDRDAGIHGEIASLDIVDGDPDG 310
V+ IN ++ P Y +P E A ++V D DA ++ V DPD
Sbjct: 211 VKDINDNAPVFNPSTYQGQVP---ENEVNARIATLKVTDDDAPNTPAWKAVYTVVNDPDQ 267
Query: 311 HFRIVPTKIDPGTKKKEYNIVVLKLLDREIAPLGYNLTLRAVDKGTPPRETY---KATQV 367
F +V DP T + + K LD E A Y L +R V+ P + AT
Sbjct: 268 QFVVV---TDPTT--NDGILKTAKGLDFE-AKQQYILHVR-VENEEPFEGSLVPSTATVT 320
Query: 368 HLVDLNDNKPVFDREIYEVDVPETTPVNTPIIRLKVSDADDGKNAQVFLEIVGGNEGGEF 427
V + P+F V+VPE V I + D + ++ I +
Sbjct: 321 VDVVDVNEAPIFMPAERRVEVPEDFGVGQEITSYTAREPDTFMDQKITYRI-WRDTANWL 379
Query: 428 NINPETGMLYTAVTLDAED-----KAFYTLTVSAIDQGN 461
INPETG ++T +D ED + Y + A D G+
Sbjct: 380 EINPETGAIFTRAEMDREDAEHVKNSTYVALIIATDDGS 418
>pdb|3UBH|A Chain A, Crystal Structure Of Drosophila N-Cadherin Ec1-4
Length = 419
Score = 90.1 bits (222), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 92/292 (31%), Positives = 144/292 (49%), Gaps = 32/292 (10%)
Query: 371 DLNDNKPVF-DREI-YEVDVPETTPVNTPIIRLKVSDADDGKNAQVFLEIVGGNEGGEFN 428
D+ND P F +R + + V P NTP+ L+ D D N F IV GG F
Sbjct: 103 DVNDEPPYFINRPLPMQAVVQLNAPPNTPVFTLQARDPDTDHNIHYF--IVRDRTGGRFE 160
Query: 429 INPETGMLYTAVT----LDAEDKAFYTLTVSAIDQ-GNAGTRK-QSAAKVKVNIVDTNDN 482
++ +G++ T T LD E Y L V A DQ G R+ QS + +++IV
Sbjct: 161 VDERSGVVRTRGTDLFQLDME----YVLYVKAEDQNGKVDDRRFQSTPEERLSIV-GGKR 215
Query: 483 DPLFDSPEMEVSINENEPAGTSVIKVTAKDKDSGENAYISYSI--ANLKPVPFEIDHFSG 540
P F P E I EN+ + +I + AK S + I Y++ F I SG
Sbjct: 216 APQFYMPSYEAEIPENQKKDSDIISIKAK---SFADREIRYTLKAQGQGAGTFNIGPTSG 272
Query: 541 VIKTTQVLDYESMRREYI--LRVRASDWGLPYRRQTEMQLKIKLLDVNDNRPQFEKVDCL 598
++K + LD+E +R+ ++ L V A++ + T + L I++ DVNDN P+FE D
Sbjct: 273 IVKLAKELDFEDLRQPHVYSLIVTATEDSGGF--STSVDLTIRVTDVNDNAPKFELPDYQ 330
Query: 599 GH-VPRNLPIGREIITLSAIDFDAGN--IISYRIVSGNEDGCFALDITSGVL 647
H V ++P+G I+ + A+D D+G+ I Y + D FA+D ++G++
Sbjct: 331 AHNVDEDIPLGTSILRVKAMDSDSGSNAEIEYLV----SDDHFAVD-SNGII 377
Score = 81.3 bits (199), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 65/202 (32%), Positives = 100/202 (49%), Gaps = 23/202 (11%)
Query: 377 PVFDREIYEVDVPETTPVNTPIIRLKVSDADDGKNAQVFLEIVGGNEGGEFNINPETGML 436
P F YE ++PE ++ II +K D + + L+ G G FNI P +G++
Sbjct: 217 PQFYMPSYEAEIPENQKKDSDIISIKAKSFAD-REIRYTLK-AQGQGAGTFNIGPTSGIV 274
Query: 437 YTAVTLDAED---KAFYTLTVSAI-DQGNAGTRKQSAAKVKVNIVDTNDNDPLFDSPEME 492
A LD ED Y+L V+A D G T + + + + D NDN P F+ P+ +
Sbjct: 275 KLAKELDFEDLRQPHVYSLIVTATEDSGGFST----SVDLTIRVTDVNDNAPKFELPDYQ 330
Query: 493 V-SINENEPAGTSVIKVTAKDKDSGENAYISYSIANLKPVPFEIDHFS----GVIKTTQV 547
+++E+ P GTS+++V A D DSG NA I Y +++ DHF+ G+I +
Sbjct: 331 AHNVDEDIPLGTSILRVKAMDSDSGSNAEIEYLVSD--------DHFAVDSNGIIVNNKQ 382
Query: 548 LDYESMRREYILRVRASDWGLP 569
LD ++ Y V A D G P
Sbjct: 383 LDADNNNAYYEFIVTAKDKGEP 404
Score = 80.9 bits (198), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 90/322 (27%), Positives = 141/322 (43%), Gaps = 29/322 (9%)
Query: 749 PEFFSFPIELQ--VNESVPLKSTLTKIIARDRDLGYNGKLVFGISSGDNDSVFRIDPDSG 806
P F + P+ +Q V + P + + + ARD D +N + + I F +D SG
Sbjct: 109 PYFINRPLPMQAVVQLNAPPNTPVFTLQARDPDTDHN--IHYFIVRDRTGGRFEVDERSG 166
Query: 807 ELKVVGYLDRERTSEYTLNITVYDL-GKPQKSTSKMLPITILDV--NDNPPKFEKSLASF 863
++ G + EY L + D GK + P L + P+F
Sbjct: 167 VVRTRGTDLFQLDMEYVLYVKAEDQNGKVDDRRFQSTPEERLSIVGGKRAPQFYMPSYEA 226
Query: 864 RVTENALNGTVIFKVNATDLDLGDNAKVVYSLMTDTQD---FAVDSATGSLYVSASLDRE 920
+ EN + I + A + ++ Y+L Q F + +G + ++ LD E
Sbjct: 227 EIPENQKKDSDIISIKAKSFA---DREIRYTLKAQGQGAGTFNIGPTSGIVKLAKELDFE 283
Query: 921 --RQ-DLYELKIRASDCDGRNDMYTLHADALVRVTIDDINDNAPNFALPNYSVK-VREDI 976
RQ +Y L + A++ G ++ D +RVT D+NDNAP F LP+Y V EDI
Sbjct: 284 DLRQPHVYSLIVTATEDSG---GFSTSVDLTIRVT--DVNDNAPKFELPDYQAHNVDEDI 338
Query: 977 PVGTVVAILSASDPDLGQGGVVRYTIVSDNEADDVFSIDRLTGTIRVAKPLDFEKRQV-H 1035
P+GT + + A D D G + Y + +DD F++D G I K LD + +
Sbjct: 339 PLGTSILRVKAMDSDSGSNAEIEYLV-----SDDHFAVDS-NGIIVNNKQLDADNNNAYY 392
Query: 1036 SLVVRAKDNGSPPLYSEATLIV 1057
+V AKD G PP AT+ V
Sbjct: 393 EFIVTAKDKGEPPKSGVATVRV 414
Score = 78.2 bits (191), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 96/334 (28%), Positives = 158/334 (47%), Gaps = 41/334 (12%)
Query: 784 GKLVFGISSGDNDSVFRIDPDS--------GELKVVGYLDRE-----RTSEYTLNITVYD 830
GK VF + + F+I D+ G ++V D E +T ++ + IT
Sbjct: 25 GKSVFQLEKETDKETFKIRDDNPWVTVETNGAVRVKKKWDYEELGPEKTIDFWVIITNMG 84
Query: 831 LGKPQKST-SKMLPITILDVNDNPPKF-EKSLASFRVTE-NALNGTVIFKVNATDLDLGD 887
K T ++ + I + DVND PP F + L V + NA T +F + A D D
Sbjct: 85 HNAGIKYTDNQRVIILVKDVNDEPPYFINRPLPMQAVVQLNAPPNTPVFTLQARDPDTDH 144
Query: 888 NAKVVYSLMTDTQD--FAVDSATGSLYVSAS----LDRERQDLYELKIRASDCDGRNDMY 941
N + Y ++ D F VD +G + + LD E Y L ++A D +G+ D
Sbjct: 145 N--IHYFIVRDRTGGRFEVDERSGVVRTRGTDLFQLDME----YVLYVKAEDQNGKVDDR 198
Query: 942 TLHADALVRVTIDDINDNAPNFALPNYSVKVREDIPVGT-VVAILSASDPDLGQGGVVRY 1000
+ R++I AP F +P+Y ++ E+ + +++I + S D +RY
Sbjct: 199 RFQSTPEERLSIVG-GKRAPQFYMPSYEAEIPENQKKDSDIISIKAKSFADRE----IRY 253
Query: 1001 TIVSDNEADDVFSIDRLTGTIRVAKPLDFE---KRQVHSLVVRAKDNGSPPLYSEATLIV 1057
T+ + + F+I +G +++AK LDFE + V+SL+V A ++ S + L +
Sbjct: 254 TLKAQGQGAGTFNIGPTSGIVKLAKELDFEDLRQPHVYSLIVTATED-SGGFSTSVDLTI 312
Query: 1058 EVSDVNENMNAPVFSDFVYQA-TVKENQPIGTSL 1090
V+DVN+ NAP F YQA V E+ P+GTS+
Sbjct: 313 RVTDVND--NAPKFELPDYQAHNVDEDIPLGTSI 344
Score = 65.9 bits (159), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 100/386 (25%), Positives = 159/386 (41%), Gaps = 73/386 (18%)
Query: 461 NAGTRKQSAAKVKVNIVDTNDNDPLF-DSP-EMEVSINENEPAGTSVIKVTAKDKDSGEN 518
NAG + +V + + D ND P F + P M+ + N P T V + A+D D+ N
Sbjct: 86 NAGIKYTDNQRVIILVKDVNDEPPYFINRPLPMQAVVQLNAPPNTPVFTLQARDPDTDHN 145
Query: 519 AYISYSIANLKPVPFEIDHFSGVIKTTQVLDYESMRREYILRVRASDW-GLPYRRQTEMQ 577
+ + + + FE+D SGV++T + D + EY+L V+A D G R+ +
Sbjct: 146 IHY-FIVRDRTGGRFEVDERSGVVRT-RGTDLFQLDMEYVLYVKAEDQNGKVDDRRFQST 203
Query: 578 LKIKLLDVNDNR-PQFEKVDCLGHVPRNLPIGREIITLSAIDFDAGNIISYRI-VSGNED 635
+ +L V R PQF +P N +II++ A F A I Y + G
Sbjct: 204 PEERLSIVGGKRAPQFYMPSYEAEIPENQKKDSDIISIKAKSF-ADREIRYTLKAQGQGA 262
Query: 636 GCFALDITSGVLSIA--CDLTDVRV-NEREINVTATDSAHFSDVVRIRINLVSARRIPEP 692
G F + TSG++ +A D D+R + + VTAT+
Sbjct: 263 GTFNIGPTSGIVKLAKELDFEDLRQPHVYSLIVTATE----------------------- 299
Query: 693 GKTLENDSGGFECKDTGVARRLTEVLAAAEKNNLRSQSYQEEFAMMPSRYGENVHVPEFF 752
DSGGF + R+T+V A K L P N
Sbjct: 300 ------DSGGFSTS-VDLTIRVTDVNDNAPKFEL------------PDYQAHN------- 333
Query: 753 SFPIELQVNESVPLKSTLTKIIARDRDLGYNGKLVFGISSGDNDSVFRIDPDSGELKVVG 812
V+E +PL +++ ++ A D D G N ++ + +S D F +D +G +
Sbjct: 334 -------VDEDIPLGTSILRVKAMDSDSGSNAEIEYLVS----DDHFAVD-SNGIIVNNK 381
Query: 813 YLDRERTSE-YTLNITVYDLGKPQKS 837
LD + + Y +T D G+P KS
Sbjct: 382 QLDADNNNAYYEFIVTAKDKGEPPKS 407
Score = 56.6 bits (135), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 76/279 (27%), Positives = 124/279 (44%), Gaps = 46/279 (16%)
Query: 104 RTGNTDVLNRERKDKYILHIKATITHRDGKKASYE-ETTCKVHVNVLDTNDLNPLFYPTE 162
RT TD+ + + Y+L++KA ++GK ++T + ++++ P FY
Sbjct: 169 RTRGTDLFQLDME--YVLYVKAE--DQNGKVDDRRFQSTPEERLSIV-GGKRAPQFYMPS 223
Query: 163 YEETVPEDLPLHTSILRVSAED-ADLGRNGEIYYSFRDMNE---QFSIHPTSGVVTLTRP 218
YE +PE+ + I+ + A+ AD EI Y+ + + F+I PTSG+V L +
Sbjct: 224 YEAEIPENQKKDSDIISIKAKSFADR----EIRYTLKAQGQGAGTFNIGPTSGIVKLAKE 279
Query: 219 LKYTD---RSVHDLVVLGQDRGSVFKGGGKPSSAKLKIKVEQINLYGPEIYVQSLPDI-- 273
L + D V+ L+V + GG +S L I+V +N P+ LPD
Sbjct: 280 LDFEDLRQPHVYSLIVTATE-----DSGGFSTSVDLTIRVTDVNDNAPKF---ELPDYQA 331
Query: 274 --VEQSYADIYAIVRV--VDRDAGIHGEIASLDIVDGDPDGHFRIVPTKIDPGTKKKEYN 329
V++ +I+RV +D D+G + EI L D HF + I
Sbjct: 332 HNVDEDIPLGTSILRVKAMDSDSGSNAEIEYL-----VSDDHFAVDSNGI---------- 376
Query: 330 IVVLKLLDREIAPLGYNLTLRAVDKGTPPRETYKATQVH 368
IV K LD + Y + A DKG PP+ +V+
Sbjct: 377 IVNNKQLDADNNNAYYEFIVTAKDKGEPPKSGVATVRVY 415
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 89/345 (25%), Positives = 145/345 (42%), Gaps = 39/345 (11%)
Query: 143 KVHVNVLDTNDLNPLFY--PTEYEETVPEDLPLHTSILRVSAEDADLGRNGEIYYSFRD- 199
+V + V D ND P F P + V + P +T + + A D D N Y+ RD
Sbjct: 96 RVIILVKDVNDEPPYFINRPLPMQAVVQLNAPPNTPVFTLQARDPDTDHNIH-YFIVRDR 154
Query: 200 MNEQFSIHPTSGVVTLTRPLKYTDRSVHDLVVLGQDRGSVFKGGGKPSSAKLK-IKVEQI 258
+F + SGVV + + L V +D+ GK + + E++
Sbjct: 155 TGGRFEVDERSGVVRTRGTDLFQLDMEYVLYVKAEDQ------NGKVDDRRFQSTPEERL 208
Query: 259 NLYG----PEIYVQSLPDIVEQSYADIYAIVRVVDRDAGIHGEIASLDIVDGDPDGHFRI 314
++ G P+ Y+ S + ++ I+ + + EI G G F I
Sbjct: 209 SIVGGKRAPQFYMPSYEAEIPENQKKDSDIISIKAKSFADR-EIRYTLKAQGQGAGTFNI 267
Query: 315 VPTKIDPGTKKKEYNIVVL-KLLDRE--IAPLGYNLTLRAVDKGTPPRETYKATQVHLVD 371
PT IV L K LD E P Y+L + A + + T + + D
Sbjct: 268 GPTS----------GIVKLAKELDFEDLRQPHVYSLIVTATEDSGGFSTSVDLT-IRVTD 316
Query: 372 LNDNKPVFDREIYEV-DVPETTPVNTPIIRLKVSDADDGKNAQVFLEIVGGNEGGEFNIN 430
+NDN P F+ Y+ +V E P+ T I+R+K D+D G NA++ E + ++ + N
Sbjct: 317 VNDNAPKFELPDYQAHNVDEDIPLGTSILRVKAMDSDSGSNAEI--EYLVSDDHFAVDSN 374
Query: 431 PETGMLYTAVTLDAE-DKAFYTLTVSAIDQGNAGTRKQSAAKVKV 474
G++ LDA+ + A+Y V+A D+G K A V+V
Sbjct: 375 ---GIIVNNKQLDADNNNAYYEFIVTAKDKGEPP--KSGVATVRV 414
>pdb|1L3W|A Chain A, C-Cadherin Ectodomain
Length = 546
Score = 89.4 bits (220), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 111/363 (30%), Positives = 174/363 (47%), Gaps = 58/363 (15%)
Query: 755 PIELQVNESVPLKSTLTKIIA-RDRDLGYNGKLVFGISSGDNDS----VFRIDPDSGELK 809
PI++ NE P L +I + +DR +N K+ + I+ D+ VFRI+ ++G +
Sbjct: 12 PIKVSENERGPFPKRLVQIKSNKDR---FN-KVYYSITGQGADNPPQGVFRIEWETGWML 67
Query: 810 VVGYLDRERTSEYTLNI-TVYDLGKPQKSTSKMLPITILDVNDNPPKFEKSLASFRVTEN 868
V LDRE +Y L+ V + G P + ++ I ++D NDN PKF + + V E
Sbjct: 68 VTRPLDREEYDKYVLSSHAVSENGSPVEEPMEIT-INVIDQNDNRPKFTQDVFRGSVREG 126
Query: 869 ALNGTVIFKVNATDLDLGD---NAKVVYSLMTDTQD------FAVDSATGSL-YVSASLD 918
GT + V+ATD D N + YS++ + F ++ TG + + LD
Sbjct: 127 VQPGTQVMAVSATDEDDNIDSLNGVLSYSILKQDPEEPIPNLFTINRETGVISLIGTGLD 186
Query: 919 RERQDLYELKIRASDCDGRNDMYTLHADALVRVTIDDINDNAPNFALPNYSVKVREDIPV 978
RE+ Y L ++A+D +G ++ A++++T D NDNAP F Y+ V E+ +
Sbjct: 187 REKFPEYTLTVQATDLEGAG--LSVEGKAIIQIT--DANDNAPIFDPKTYTALVPEN-EI 241
Query: 979 GTVVAILSASDPDL--------------GQGGVVRYTIVSDNEADDVFSIDRLTGTIRVA 1024
G V LS +D D+ +GG + I +D E++ G + A
Sbjct: 242 GFEVQRLSVTDLDMPGTPAWQAVYKIRVNEGGF--FNITTDPESNQ--------GILTTA 291
Query: 1025 KPLDFEKRQVHSLVVRAKDNGSP---PL-YSEATLIVEVSDVNENMNAPVFSDFVYQATV 1080
K LDFE R+ + L + +N P PL S AT+ V V DVNE AP F V + V
Sbjct: 292 KGLDFELRKQYVLQITV-ENAEPFSVPLPTSTATVTVTVEDVNE---APFFVPAVSRVDV 347
Query: 1081 KEN 1083
E+
Sbjct: 348 SED 350
Score = 76.3 bits (186), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 101/359 (28%), Positives = 164/359 (45%), Gaps = 22/359 (6%)
Query: 744 ENVHVPEFFSFPIELQVNESVPLKSTLTKIIARDRDL---GYNGKLVFGISSGDND---- 796
+N + P+F V E V + + + A D D NG L + I D +
Sbjct: 107 QNDNRPKFTQDVFRGSVREGVQPGTQVMAVSATDEDDNIDSLNGVLSYSILKQDPEEPIP 166
Query: 797 SVFRIDPDSGELKVVGY-LDRERTSEYTLNITVYDLGKPQKSTSKMLPITILDVNDNPPK 855
++F I+ ++G + ++G LDRE+ EYTL + DL S I I D NDN P
Sbjct: 167 NLFTINRETGVISLIGTGLDREKFPEYTLTVQATDLEGAGLSVEGKAIIQITDANDNAPI 226
Query: 856 FEKSLASFRVTENALNGTVIFKVNATDLDL-GDNA-KVVYSLMTDTQDFA-----VDSAT 908
F+ + V EN + G + +++ TDLD+ G A + VY + + F +S
Sbjct: 227 FDPKTYTALVPENEI-GFEVQRLSVTDLDMPGTPAWQAVYKIRVNEGGFFNITTDPESNQ 285
Query: 909 GSLYVSASLDRERQDLYELKIRASDCDGRNDMYTLHADALVRVTIDDINDNAPNFALPNY 968
G L + LD E + Y L+I + + + + + A V VT++D+N+ AP F
Sbjct: 286 GILTTAKGLDFELRKQYVLQITVENAEPFS-VPLPTSTATVTVTVEDVNE-APFFVPAVS 343
Query: 969 SVKVREDIPVGTVVAILSASDPDLGQGGVVRYTIVSDNEADDVFSIDR--LTGTIRVAKP 1026
V V ED+ G + L A DPD Q + Y I +D + D +TG + +
Sbjct: 344 RVDVSEDLSRGEKIISLVAQDPDKQQIQKLSYFIGNDPARWLTVNKDNGIVTGNGNLDRE 403
Query: 1027 LDFEKRQVHSLVVRAKDNGSPPLYSEATLIVEVSDVNENMNAPVFSDFVYQATVKENQP 1085
++ K +++++ D+G TLI+ V DVN+ N PV S V+ + +P
Sbjct: 404 SEYVKNNTYTVIMLVTDDGVSVGTGTGTLILHVLDVND--NGPVPSPRVFTMCDQNPEP 460
Score = 75.9 bits (185), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 101/350 (28%), Positives = 157/350 (44%), Gaps = 39/350 (11%)
Query: 305 DGDPDGHFRIVPTKIDPGTKKKEYNIVVLKLLDREIAPLGYNLTLRAVDKGTPPRETYKA 364
D P G FRI + + ++V + LDRE Y L+ AV + P E
Sbjct: 50 DNPPQGVFRI---------EWETGWMLVTRPLDREEYD-KYVLSSHAVSENGSPVEEPME 99
Query: 365 TQVHLVDLNDNKPVFDREIYEVDVPETTPVNTPIIRLKVSDAD---DGKNAQVFLEIVGG 421
++++D NDN+P F ++++ V E T ++ + +D D D N + I+
Sbjct: 100 ITINVIDQNDNRPKFTQDVFRGSVREGVQPGTQVMAVSATDEDDNIDSLNGVLSYSILKQ 159
Query: 422 NE----GGEFNINPETGMLYTAVT-LDAEDKAFYTLTVSAIDQGNAGTRKQSAAKVKVNI 476
+ F IN ETG++ T LD E YTLTV A D AG + A ++ I
Sbjct: 160 DPEEPIPNLFTINRETGVISLIGTGLDREKFPEYTLTVQATDLEGAGLSVEGKAIIQ--I 217
Query: 477 VDTNDNDPLFDSPEMEVSINENEPAGTSVIKVTAKDKD-SGENAYIS-YSIANLKPVPFE 534
D NDN P+FD + ENE G V +++ D D G A+ + Y I + F
Sbjct: 218 TDANDNAPIFDPKTYTALVPENE-IGFEVQRLSVTDLDMPGTPAWQAVYKIRVNEGGFFN 276
Query: 535 I----DHFSGVIKTTQVLDYESMRREYILRV---RASDWGLPYRRQTEMQLKIKLLDVND 587
I + G++ T + LD+E +R++Y+L++ A + +P T + DVN+
Sbjct: 277 ITTDPESNQGILTTAKGLDFE-LRKQYVLQITVENAEPFSVPLPTSTATVTV-TVEDVNE 334
Query: 588 NR---PQFEKVDCLGHVPRNLPIGREIITLSAIDFDAGNIISYRIVSGNE 634
P +VD V +L G +II+L A D D I GN+
Sbjct: 335 APFFVPAVSRVD----VSEDLSRGEKIISLVAQDPDKQQIQKLSYFIGND 380
Score = 75.1 bits (183), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 113/426 (26%), Positives = 178/426 (41%), Gaps = 41/426 (9%)
Query: 189 RNGEIYYSFRDMNEQ------FSIHPTSGVVTLTRPLKYTDRSVHDLVVLGQDRGSVFKG 242
R ++YYS F I +G + +TRPL DR +D VL
Sbjct: 36 RFNKVYYSITGQGADNPPQGVFRIEWETGWMLVTRPL---DREEYDKYVLS---SHAVSE 89
Query: 243 GGKPSSAKLKIKVEQINL------YGPEIYVQSLPDIVEQSYADIYAIVRVVDRDAGIHG 296
G P ++I + I+ + +++ S+ + V Q + A V D D I
Sbjct: 90 NGSPVEEPMEITINVIDQNDNRPKFTQDVFRGSVREGV-QPGTQVMA-VSATDEDDNIDS 147
Query: 297 --EIASLDIVDGDPDGHFRIVPTKIDPGTKKKEYNIVVL--KLLDREIAPLGYNLTLRAV 352
+ S I+ DP+ +P T +E ++ L LDRE P Y LT++A
Sbjct: 148 LNGVLSYSILKQDPE---EPIPNLF---TINRETGVISLIGTGLDREKFP-EYTLTVQAT 200
Query: 353 DKGTPPRETYKATQVHLVDLNDNKPVFDREIYEVDVPETTPVNTPIIRLKVSDAD-DGKN 411
D + + D NDN P+FD + Y VPE + + RL V+D D G
Sbjct: 201 DLEGAGLSVEGKAIIQITDANDNAPIFDPKTYTALVPENE-IGFEVQRLSVTDLDMPGTP 259
Query: 412 AQVFLEIVGGNEGGEFNI--NPET--GMLYTAVTLDAEDKAFYTLTVSAIDQGNAGTRKQ 467
A + + NEGG FNI +PE+ G+L TA LD E + Y L ++ +
Sbjct: 260 AWQAVYKIRVNEGGFFNITTDPESNQGILTTAKGLDFELRKQYVLQITVENAEPFSVPLP 319
Query: 468 SAAKVKVNIVDTNDNDPLFDSPEMEVSINENEPAGTSVIKVTAKDKDSGENAYISYSIAN 527
++ V+ + P F V ++E+ G +I + A+D D + +SY I N
Sbjct: 320 TSTATVTVTVEDVNEAPFFVPAVSRVDVSEDLSRGEKIISLVAQDPDKQQIQKLSYFIGN 379
Query: 528 LKPVPFEIDHFSGVIKTTQVLDYES---MRREYILRVRASDWGLPYRRQTEMQLKIKLLD 584
++ +G++ LD ES Y + + +D G+ T L + +LD
Sbjct: 380 DPARWLTVNKDNGIVTGNGNLDRESEYVKNNTYTVIMLVTDDGVSVGTGTGT-LILHVLD 438
Query: 585 VNDNRP 590
VNDN P
Sbjct: 439 VNDNGP 444
Score = 50.1 bits (118), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 107/445 (24%), Positives = 174/445 (39%), Gaps = 55/445 (12%)
Query: 97 WFLLIRTRTGNTDVLNRERKDKYILHIKATITHRDGKKASYEETTCKVHVNVLDTNDLNP 156
W L+ R L+RE DKY+L +H + S E ++ +NV+D ND P
Sbjct: 65 WMLVTRP-------LDREEYDKYVLS-----SHAVSENGSPVEEPMEITINVIDQNDNRP 112
Query: 157 LFYPTEYEETVPEDLPLHTSILRVSAEDAD---LGRNGEIYYSFRDMNEQ------FSIH 207
F + +V E + T ++ VSA D D NG + YS + + F+I+
Sbjct: 113 KFTQDVFRGSVREGVQPGTQVMAVSATDEDDNIDSLNGVLSYSILKQDPEEPIPNLFTIN 172
Query: 208 PTSGVVTLT-RPLKYTDRSVHDLVVLGQDRGSVFKGGGKPSSAKLKIKVEQIN----LYG 262
+GV++L L + L V D +G G K I++ N ++
Sbjct: 173 RETGVISLIGTGLDREKFPEYTLTVQATD----LEGAGLSVEGKAIIQITDANDNAPIFD 228
Query: 263 PEIYVQSLPDIVEQSYADIYAIVRVVDRDAGIHGEIASLDIVDGDPDGHFRIVPTKIDPG 322
P+ Y +P E + V D D ++ + + G F I DP
Sbjct: 229 PKTYTALVP---ENEIGFEVQRLSVTDLDMPGTPAWQAVYKIRVNEGGFFNIT---TDP- 281
Query: 323 TKKKEYNIVVLKLLDREI-APLGYNLTLRAVDKGTPPRETYKATQVHLVDLNDNKPVFDR 381
+ + + K LD E+ +T+ + + P T AT V+ + P F
Sbjct: 282 -ESNQGILTTAKGLDFELRKQYVLQITVENAEPFSVPLPTSTATVTVTVEDVNEAPFFVP 340
Query: 382 EIYEVDVPETTPVNTPIIRLKVSDADDGKNAQVFLEIVGGNEGGEFNINPETGMLYTAVT 441
+ VDV E II L D D + Q +G + +N + G++
Sbjct: 341 AVSRVDVSEDLSRGEKIISLVAQDPDK-QQIQKLSYFIGNDPARWLTVNKDNGIVTGNGN 399
Query: 442 LDAEDKAF----YTLTVSAIDQG-NAGTRKQSAAKVKVNIVDTNDNDPLFDSPEMEVSIN 496
LD E + YT+ + D G + GT + ++++D NDN P+ SP + +
Sbjct: 400 LDRESEYVKNNTYTVIMLVTDDGVSVGT---GTGTLILHVLDVNDNGPV-PSPRVFTMCD 455
Query: 497 EN-EPAGTSVIKVTAKDKDSGENAY 520
+N EP +T D D N Y
Sbjct: 456 QNPEPQ-----VLTISDADIPPNTY 475
>pdb|1Q55|A Chain A, W-Shaped Trans Interactions Of Cadherins Model Based On
Fitting C- Cadherin (1l3w) To 3d Map Of Desmosomes
Obtained By Electron Tomography
pdb|1Q55|B Chain B, W-Shaped Trans Interactions Of Cadherins Model Based On
Fitting C- Cadherin (1l3w) To 3d Map Of Desmosomes
Obtained By Electron Tomography
pdb|1Q55|C Chain C, W-Shaped Trans Interactions Of Cadherins Model Based On
Fitting C- Cadherin (1l3w) To 3d Map Of Desmosomes
Obtained By Electron Tomography
pdb|1Q55|D Chain D, W-Shaped Trans Interactions Of Cadherins Model Based On
Fitting C- Cadherin (1l3w) To 3d Map Of Desmosomes
Obtained By Electron Tomography
pdb|1Q5A|A Chain A, S-Shaped Trans Interactions Of Cadherins Model Based On
Fitting C- Cadherin (1l3w) To 3d Map Of Desmosomes
Obtained By Electron Tomography
pdb|1Q5A|B Chain B, S-Shaped Trans Interactions Of Cadherins Model Based On
Fitting C- Cadherin (1l3w) To 3d Map Of Desmosomes
Obtained By Electron Tomography
pdb|1Q5B|A Chain A, Lambda-Shaped Trans And Cis Interactions Of Cadherins Model
Based On Fitting C-Cadherin (1l3w) To 3d Map Of
Desmosomes Obtained By Electron Tomography
pdb|1Q5B|B Chain B, Lambda-Shaped Trans And Cis Interactions Of Cadherins Model
Based On Fitting C-Cadherin (1l3w) To 3d Map Of
Desmosomes Obtained By Electron Tomography
pdb|1Q5B|C Chain C, Lambda-Shaped Trans And Cis Interactions Of Cadherins Model
Based On Fitting C-Cadherin (1l3w) To 3d Map Of
Desmosomes Obtained By Electron Tomography
pdb|1Q5C|A Chain A, S-S-Lambda-Shaped Trans And Cis Interactions Of Cadherins
Model Based On Fitting C-Cadherin (1l3w) To 3d Map Of
Desmosomes Obtained By Electron Tomography
pdb|1Q5C|B Chain B, S-S-Lambda-Shaped Trans And Cis Interactions Of Cadherins
Model Based On Fitting C-Cadherin (1l3w) To 3d Map Of
Desmosomes Obtained By Electron Tomography
pdb|1Q5C|C Chain C, S-S-Lambda-Shaped Trans And Cis Interactions Of Cadherins
Model Based On Fitting C-Cadherin (1l3w) To 3d Map Of
Desmosomes Obtained By Electron Tomography
pdb|1Q5C|D Chain D, S-S-Lambda-Shaped Trans And Cis Interactions Of Cadherins
Model Based On Fitting C-Cadherin (1l3w) To 3d Map Of
Desmosomes Obtained By Electron Tomography
Length = 880
Score = 89.0 bits (219), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 111/363 (30%), Positives = 174/363 (47%), Gaps = 58/363 (15%)
Query: 755 PIELQVNESVPLKSTLTKIIA-RDRDLGYNGKLVFGISSGDNDS----VFRIDPDSGELK 809
PI++ NE P L +I + +DR +N K+ + I+ D+ VFRI+ ++G +
Sbjct: 161 PIKVSENERGPFPKRLVQIKSNKDR---FN-KVYYSITGQGADNPPQGVFRIEWETGWML 216
Query: 810 VVGYLDRERTSEYTLNI-TVYDLGKPQKSTSKMLPITILDVNDNPPKFEKSLASFRVTEN 868
V LDRE +Y L+ V + G P + ++ I ++D NDN PKF + + V E
Sbjct: 217 VTRPLDREEYDKYVLSSHAVSENGSPVEEPMEIT-INVIDQNDNRPKFTQDVFRGSVREG 275
Query: 869 ALNGTVIFKVNATDLDLGD---NAKVVYSLMTDTQD------FAVDSATGSL-YVSASLD 918
GT + V+ATD D N + YS++ + F ++ TG + + LD
Sbjct: 276 VQPGTQVMAVSATDEDDNIDSLNGVLSYSILKQDPEEPIPNLFTINRETGVISLIGTGLD 335
Query: 919 RERQDLYELKIRASDCDGRNDMYTLHADALVRVTIDDINDNAPNFALPNYSVKVREDIPV 978
RE+ Y L ++A+D +G ++ A++++T D NDNAP F Y+ V E+ +
Sbjct: 336 REKFPEYTLTVQATDLEGAG--LSVEGKAIIQIT--DANDNAPIFDPKTYTALVPEN-EI 390
Query: 979 GTVVAILSASDPDL--------------GQGGVVRYTIVSDNEADDVFSIDRLTGTIRVA 1024
G V LS +D D+ +GG + I +D E++ G + A
Sbjct: 391 GFEVQRLSVTDLDMPGTPAWQAVYKIRVNEGGF--FNITTDPESNQ--------GILTTA 440
Query: 1025 KPLDFEKRQVHSLVVRAKDNGSP---PL-YSEATLIVEVSDVNENMNAPVFSDFVYQATV 1080
K LDFE R+ + L + +N P PL S AT+ V V DVNE AP F V + V
Sbjct: 441 KGLDFELRKQYVLQITV-ENAEPFSVPLPTSTATVTVTVEDVNE---APFFVPAVSRVDV 496
Query: 1081 KEN 1083
E+
Sbjct: 497 SED 499
Score = 76.6 bits (187), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 101/359 (28%), Positives = 164/359 (45%), Gaps = 22/359 (6%)
Query: 744 ENVHVPEFFSFPIELQVNESVPLKSTLTKIIARDRDL---GYNGKLVFGISSGDND---- 796
+N + P+F V E V + + + A D D NG L + I D +
Sbjct: 256 QNDNRPKFTQDVFRGSVREGVQPGTQVMAVSATDEDDNIDSLNGVLSYSILKQDPEEPIP 315
Query: 797 SVFRIDPDSGELKVVGY-LDRERTSEYTLNITVYDLGKPQKSTSKMLPITILDVNDNPPK 855
++F I+ ++G + ++G LDRE+ EYTL + DL S I I D NDN P
Sbjct: 316 NLFTINRETGVISLIGTGLDREKFPEYTLTVQATDLEGAGLSVEGKAIIQITDANDNAPI 375
Query: 856 FEKSLASFRVTENALNGTVIFKVNATDLDL-GDNA-KVVYSLMTDTQDFA-----VDSAT 908
F+ + V EN + G + +++ TDLD+ G A + VY + + F +S
Sbjct: 376 FDPKTYTALVPENEI-GFEVQRLSVTDLDMPGTPAWQAVYKIRVNEGGFFNITTDPESNQ 434
Query: 909 GSLYVSASLDRERQDLYELKIRASDCDGRNDMYTLHADALVRVTIDDINDNAPNFALPNY 968
G L + LD E + Y L+I + + + + + A V VT++D+N+ AP F
Sbjct: 435 GILTTAKGLDFELRKQYVLQITVENAEPFS-VPLPTSTATVTVTVEDVNE-APFFVPAVS 492
Query: 969 SVKVREDIPVGTVVAILSASDPDLGQGGVVRYTIVSDNEADDVFSIDR--LTGTIRVAKP 1026
V V ED+ G + L A DPD Q + Y I +D + D +TG + +
Sbjct: 493 RVDVSEDLSRGEKIISLVAQDPDKQQIQKLSYFIGNDPARWLTVNKDNGIVTGNGNLDRE 552
Query: 1027 LDFEKRQVHSLVVRAKDNGSPPLYSEATLIVEVSDVNENMNAPVFSDFVYQATVKENQP 1085
++ K +++++ D+G TLI+ V DVN+ N PV S V+ + +P
Sbjct: 553 SEYVKNNTYTVIMLVTDDGVSVGTGTGTLILHVLDVND--NGPVPSPRVFTMCDQNPEP 609
Score = 76.3 bits (186), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 101/351 (28%), Positives = 157/351 (44%), Gaps = 39/351 (11%)
Query: 304 VDGDPDGHFRIVPTKIDPGTKKKEYNIVVLKLLDREIAPLGYNLTLRAVDKGTPPRETYK 363
D P G FRI + + ++V + LDRE Y L+ AV + P E
Sbjct: 198 ADNPPQGVFRI---------EWETGWMLVTRPLDREEYD-KYVLSSHAVSENGSPVEEPM 247
Query: 364 ATQVHLVDLNDNKPVFDREIYEVDVPETTPVNTPIIRLKVSDAD---DGKNAQVFLEIVG 420
++++D NDN+P F ++++ V E T ++ + +D D D N + I+
Sbjct: 248 EITINVIDQNDNRPKFTQDVFRGSVREGVQPGTQVMAVSATDEDDNIDSLNGVLSYSILK 307
Query: 421 GNE----GGEFNINPETGMLYTAVT-LDAEDKAFYTLTVSAIDQGNAGTRKQSAAKVKVN 475
+ F IN ETG++ T LD E YTLTV A D AG + K +
Sbjct: 308 QDPEEPIPNLFTINRETGVISLIGTGLDREKFPEYTLTVQATDLEGAGLSVE--GKAIIQ 365
Query: 476 IVDTNDNDPLFDSPEMEVSINENEPAGTSVIKVTAKDKD-SGENAYIS-YSIANLKPVPF 533
I D NDN P+FD + ENE G V +++ D D G A+ + Y I + F
Sbjct: 366 ITDANDNAPIFDPKTYTALVPENE-IGFEVQRLSVTDLDMPGTPAWQAVYKIRVNEGGFF 424
Query: 534 EI----DHFSGVIKTTQVLDYESMRREYILRV---RASDWGLPYRRQTEMQLKIKLLDVN 586
I + G++ T + LD+E +R++Y+L++ A + +P T + + DVN
Sbjct: 425 NITTDPESNQGILTTAKGLDFE-LRKQYVLQITVENAEPFSVPLPTSTATV-TVTVEDVN 482
Query: 587 DNR---PQFEKVDCLGHVPRNLPIGREIITLSAIDFDAGNIISYRIVSGNE 634
+ P +VD V +L G +II+L A D D I GN+
Sbjct: 483 EAPFFVPAVSRVD----VSEDLSRGEKIISLVAQDPDKQQIQKLSYFIGND 529
Score = 75.9 bits (185), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 113/426 (26%), Positives = 178/426 (41%), Gaps = 41/426 (9%)
Query: 189 RNGEIYYSFRDMNEQ------FSIHPTSGVVTLTRPLKYTDRSVHDLVVLGQDRGSVFKG 242
R ++YYS F I +G + +TRPL DR +D VL
Sbjct: 185 RFNKVYYSITGQGADNPPQGVFRIEWETGWMLVTRPL---DREEYDKYVLSS---HAVSE 238
Query: 243 GGKPSSAKLKIKVEQINL------YGPEIYVQSLPDIVEQSYADIYAIVRVVDRDAGIHG 296
G P ++I + I+ + +++ S+ + V Q + A V D D I
Sbjct: 239 NGSPVEEPMEITINVIDQNDNRPKFTQDVFRGSVREGV-QPGTQVMA-VSATDEDDNIDS 296
Query: 297 --EIASLDIVDGDPDGHFRIVPTKIDPGTKKKEYNIVVL--KLLDREIAPLGYNLTLRAV 352
+ S I+ DP+ +P T +E ++ L LDRE P Y LT++A
Sbjct: 297 LNGVLSYSILKQDPE---EPIPNLF---TINRETGVISLIGTGLDREKFP-EYTLTVQAT 349
Query: 353 DKGTPPRETYKATQVHLVDLNDNKPVFDREIYEVDVPETTPVNTPIIRLKVSDAD-DGKN 411
D + + D NDN P+FD + Y VPE + + RL V+D D G
Sbjct: 350 DLEGAGLSVEGKAIIQITDANDNAPIFDPKTYTALVPENE-IGFEVQRLSVTDLDMPGTP 408
Query: 412 AQVFLEIVGGNEGGEFNI--NPET--GMLYTAVTLDAEDKAFYTLTVSAIDQGNAGTRKQ 467
A + + NEGG FNI +PE+ G+L TA LD E + Y L ++ +
Sbjct: 409 AWQAVYKIRVNEGGFFNITTDPESNQGILTTAKGLDFELRKQYVLQITVENAEPFSVPLP 468
Query: 468 SAAKVKVNIVDTNDNDPLFDSPEMEVSINENEPAGTSVIKVTAKDKDSGENAYISYSIAN 527
++ V+ + P F V ++E+ G +I + A+D D + +SY I N
Sbjct: 469 TSTATVTVTVEDVNEAPFFVPAVSRVDVSEDLSRGEKIISLVAQDPDKQQIQKLSYFIGN 528
Query: 528 LKPVPFEIDHFSGVIKTTQVLDYES---MRREYILRVRASDWGLPYRRQTEMQLKIKLLD 584
++ +G++ LD ES Y + + +D G+ T L + +LD
Sbjct: 529 DPARWLTVNKDNGIVTGNGNLDRESEYVKNNTYTVIMLVTDDGVSVGTGTGT-LILHVLD 587
Query: 585 VNDNRP 590
VNDN P
Sbjct: 588 VNDNGP 593
Score = 50.1 bits (118), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 107/445 (24%), Positives = 174/445 (39%), Gaps = 55/445 (12%)
Query: 97 WFLLIRTRTGNTDVLNRERKDKYILHIKATITHRDGKKASYEETTCKVHVNVLDTNDLNP 156
W L+ R L+RE DKY+L +H + S E ++ +NV+D ND P
Sbjct: 214 WMLVTRP-------LDREEYDKYVLS-----SHAVSENGSPVEEPMEITINVIDQNDNRP 261
Query: 157 LFYPTEYEETVPEDLPLHTSILRVSAEDAD---LGRNGEIYYSFRDMNEQ------FSIH 207
F + +V E + T ++ VSA D D NG + YS + + F+I+
Sbjct: 262 KFTQDVFRGSVREGVQPGTQVMAVSATDEDDNIDSLNGVLSYSILKQDPEEPIPNLFTIN 321
Query: 208 PTSGVVTLT-RPLKYTDRSVHDLVVLGQDRGSVFKGGGKPSSAKLKIKVEQIN----LYG 262
+GV++L L + L V D +G G K I++ N ++
Sbjct: 322 RETGVISLIGTGLDREKFPEYTLTVQATD----LEGAGLSVEGKAIIQITDANDNAPIFD 377
Query: 263 PEIYVQSLPDIVEQSYADIYAIVRVVDRDAGIHGEIASLDIVDGDPDGHFRIVPTKIDPG 322
P+ Y +P E + V D D ++ + + G F I DP
Sbjct: 378 PKTYTALVP---ENEIGFEVQRLSVTDLDMPGTPAWQAVYKIRVNEGGFFNIT---TDP- 430
Query: 323 TKKKEYNIVVLKLLDREI-APLGYNLTLRAVDKGTPPRETYKATQVHLVDLNDNKPVFDR 381
+ + + K LD E+ +T+ + + P T AT V+ + P F
Sbjct: 431 -ESNQGILTTAKGLDFELRKQYVLQITVENAEPFSVPLPTSTATVTVTVEDVNEAPFFVP 489
Query: 382 EIYEVDVPETTPVNTPIIRLKVSDADDGKNAQVFLEIVGGNEGGEFNINPETGMLYTAVT 441
+ VDV E II L D D + Q +G + +N + G++
Sbjct: 490 AVSRVDVSEDLSRGEKIISLVAQDPDK-QQIQKLSYFIGNDPARWLTVNKDNGIVTGNGN 548
Query: 442 LDAEDKAF----YTLTVSAIDQG-NAGTRKQSAAKVKVNIVDTNDNDPLFDSPEMEVSIN 496
LD E + YT+ + D G + GT + ++++D NDN P+ SP + +
Sbjct: 549 LDRESEYVKNNTYTVIMLVTDDGVSVGT---GTGTLILHVLDVNDNGPV-PSPRVFTMCD 604
Query: 497 EN-EPAGTSVIKVTAKDKDSGENAY 520
+N EP +T D D N Y
Sbjct: 605 QNPEPQ-----VLTISDADIPPNTY 624
>pdb|1EDH|A Chain A, E-Cadherin Domains 1 And 2 In Complex With Calcium
pdb|1EDH|B Chain B, E-Cadherin Domains 1 And 2 In Complex With Calcium
Length = 226
Score = 82.8 bits (203), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 73/225 (32%), Positives = 113/225 (50%), Gaps = 25/225 (11%)
Query: 755 PIELQVNESVPLKSTLTKIIA-RDRDLGYNGKLVFGISSGDND----SVFRIDPDSGELK 809
PI NE L +I + RD++ K+ + I+ D VF I+ ++G LK
Sbjct: 8 PISCPENEKGEFPKNLVQIKSNRDKET----KVFYSITGQGADKPPVGVFIIERETGWLK 63
Query: 810 VVGYLDRERTSEYTL-NITVYDLGKPQKSTSKMLPITILDVNDNPPKFEKSLASFRVTEN 868
V LDRE ++Y L + V G+ + +++ IT+ D NDN P+F + + V E
Sbjct: 64 VTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIV-ITVTDQNDNRPEFTQEVFEGSVAEG 122
Query: 869 ALNGTVIFKVNATDLD---LGDNAKVVYSLMTDTQD------FAVDSATGSLYV-SASLD 918
A+ GT + KV+ATD D NA + Y++++ + F V+ TG + V ++ LD
Sbjct: 123 AVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVLTSGLD 182
Query: 919 RERQDLYELKIRASDCDGRNDMYTLHADALVRVTIDDINDNAPNF 963
RE Y L ++A+D G L A +T+ DINDNAP F
Sbjct: 183 RESYPTYTLVVQAADLQGEG----LSTTAKAVITVKDINDNAPVF 223
Score = 68.9 bits (167), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 69/199 (34%), Positives = 91/199 (45%), Gaps = 23/199 (11%)
Query: 410 KNAQVFLEIVGGNEG----GEFNINPETGMLYTAVTLDAEDKAFYTLTVSAIDQGNAGTR 465
K +VF I G G F I ETG L LD E A Y L A+ G
Sbjct: 32 KETKVFYSITGQGADKPPVGVFIIERETGWLKVTQPLDREAIAKYILYSHAVSSN--GEA 89
Query: 466 KQSAAKVKVNIVDTNDNDPLFDSPEMEVSINENEPAGTSVIKVTAKDKDSGENAY---IS 522
+ ++ + + D NDN P F E S+ E GTSV+KV+A D D N Y I+
Sbjct: 90 VEDPMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIA 149
Query: 523 YSIANLKP-VP----FEIDHFSGVIKT-TQVLDYESMRREYILRVRASDW---GLPYRRQ 573
Y+I + P +P F ++ +GVI T LD ES Y L V+A+D GL
Sbjct: 150 YTIVSQDPELPHKNMFTVNRDTGVISVLTSGLDRESYPT-YTLVVQAADLQGEGL----S 204
Query: 574 TEMQLKIKLLDVNDNRPQF 592
T + I + D+NDN P F
Sbjct: 205 TTAKAVITVKDINDNAPVF 223
Score = 67.8 bits (164), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 63/196 (32%), Positives = 91/196 (46%), Gaps = 19/196 (9%)
Query: 890 KVVYSLMTDTQD------FAVDSATGSLYVSASLDRERQDLYELKIRASDCDGRNDMYTL 943
KV YS+ D F ++ TG L V+ LDRE Y L A +G +
Sbjct: 35 KVFYSITGQGADKPPVGVFIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGE----AV 90
Query: 944 HADALVRVTIDDINDNAPNFALPNYSVKVREDIPVGTVVAILSASDPD---LGQGGVVRY 1000
+ +T+ D NDN P F + V E GT V +SA+D D + Y
Sbjct: 91 EDPMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAY 150
Query: 1001 TIVSDNEA---DDVFSIDRLTGTIRV-AKPLDFEKRQVHSLVVRAKDNGSPPLYSEATLI 1056
TIVS + ++F+++R TG I V LD E ++LVV+A D L + A +
Sbjct: 151 TIVSQDPELPHKNMFTVNRDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGLSTTAKAV 210
Query: 1057 VEVSDVNENMNAPVFS 1072
+ V D+N+ NAPVF+
Sbjct: 211 ITVKDIND--NAPVFN 224
Score = 59.3 bits (142), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 52/164 (31%), Positives = 76/164 (46%), Gaps = 11/164 (6%)
Query: 332 VLKLLDREIAPLGYNLTLRAVDKGTPPRETYKATQVHLVDLNDNKPVFDREIYEVDVPET 391
V + LDRE A Y L AV E + + D NDN+P F +E++E V E
Sbjct: 64 VTQPLDRE-AIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAEG 122
Query: 392 TPVNTPIIRLKVSDADD---GKNAQVFLEIVGGN----EGGEFNINPETGMLYTAVT-LD 443
T ++++ +DADD NA + IV + F +N +TG++ + LD
Sbjct: 123 AVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVLTSGLD 182
Query: 444 AEDKAFYTLTVSAIDQGNAGTRKQSAAKVKVNIVDTNDNDPLFD 487
E YTL V A D G + AK + + D NDN P+F+
Sbjct: 183 RESYPTYTLVVQAADLQGEGL--STTAKAVITVKDINDNAPVFN 224
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 56/189 (29%), Positives = 84/189 (44%), Gaps = 25/189 (13%)
Query: 88 AEERLVGDFWFLLIRTRTGN---TDVLNRERKDKYILHIKATITHRDGKKASYEETTCKV 144
A++ VG F +I TG T L+RE KYIL+ +H E ++
Sbjct: 45 ADKPPVGVF---IIERETGWLKVTQPLDREAIAKYILY-----SHAVSSNGEAVEDPMEI 96
Query: 145 HVNVLDTNDLNPLFYPTEYEETVPEDLPLHTSILRVSAEDAD---LGRNGEIYYSFRDMN 201
+ V D ND P F +E +V E TS+++VSA DAD N I Y+ +
Sbjct: 97 VITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQD 156
Query: 202 EQ------FSIHPTSGVVT-LTRPLKYTDRSVHDLVVLGQDRGSVFKGGGKPSSAKLKIK 254
+ F+++ +GV++ LT L + LVV D +G G ++AK I
Sbjct: 157 PELPHKNMFTVNRDTGVISVLTSGLDRESYPTYTLVVQAAD----LQGEGLSTTAKAVIT 212
Query: 255 VEQINLYGP 263
V+ IN P
Sbjct: 213 VKDINDNAP 221
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 60/124 (48%), Gaps = 8/124 (6%)
Query: 744 ENVHVPEFFSFPIELQVNESVPLKSTLTKIIARDRD---LGYNGKLVFGISSGD----ND 796
+N + PEF E V E +++ K+ A D D YN + + I S D +
Sbjct: 103 QNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHK 162
Query: 797 SVFRIDPDSGELKVV-GYLDRERTSEYTLNITVYDLGKPQKSTSKMLPITILDVNDNPPK 855
++F ++ D+G + V+ LDRE YTL + DL ST+ IT+ D+NDN P
Sbjct: 163 NMFTVNRDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGLSTTAKAVITVKDINDNAPV 222
Query: 856 FEKS 859
F S
Sbjct: 223 FNPS 226
Score = 44.3 bits (103), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 53/172 (30%), Positives = 83/172 (48%), Gaps = 19/172 (11%)
Query: 493 VSINENE----PAGTSVIKVTAKDKDSGENAYISYSIANLKPVP-FEIDHFSGVIKTTQV 547
+S ENE P IK + +DK++ I+ A+ PV F I+ +G +K TQ
Sbjct: 9 ISCPENEKGEFPKNLVQIK-SNRDKETKVFYSITGQGADKPPVGVFIIERETGWLKVTQP 67
Query: 548 LDYESMRREYILRVRA-SDWGLPYRRQTEMQLKIKLLDVNDNRPQFEKVDCLGHVPRNLP 606
LD E++ + YIL A S G + M++ I + D NDNRP+F + G V
Sbjct: 68 LDREAIAK-YILYSHAVSSNG--EAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAEGAV 124
Query: 607 IGREIITLSAIDFD-----AGNIISYRIVSGNED----GCFALDITSGVLSI 649
G ++ +SA D D I+Y IVS + + F ++ +GV+S+
Sbjct: 125 PGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISV 176
Score = 39.3 bits (90), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 42/80 (52%), Gaps = 2/80 (2%)
Query: 1011 VFSIDRLTGTIRVAKPLDFEKRQVHSLVVRAKDNGSPPLYSEATLIVEVSDVNENMNAPV 1070
VF I+R TG ++V +PLD E + L A + + +++ V+D N+N P
Sbjct: 52 VFIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNR--PE 109
Query: 1071 FSDFVYQATVKENQPIGTSL 1090
F+ V++ +V E GTS+
Sbjct: 110 FTQEVFEGSVAEGAVPGTSV 129
>pdb|3LND|A Chain A, Crystal Structure Of Cadherin-6 Ec12 W4a
pdb|3LND|B Chain B, Crystal Structure Of Cadherin-6 Ec12 W4a
pdb|3LND|C Chain C, Crystal Structure Of Cadherin-6 Ec12 W4a
pdb|3LND|D Chain D, Crystal Structure Of Cadherin-6 Ec12 W4a
Length = 207
Score = 82.8 bits (203), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 62/185 (33%), Positives = 101/185 (54%), Gaps = 10/185 (5%)
Query: 777 DRDLGYNGKLVFGISSGDNDSVFRIDPDSGELKVVGYLDRERTSEYTLNITVYD--LGKP 834
D+D G +G L + +S +F I+ ++G+++ LDRE Y L + G+P
Sbjct: 27 DQDRG-DGSLKYILSGDGAGDLFIINENTGDIQATKRLDREEKPVYILRAQAVNRRTGRP 85
Query: 835 QKSTSKMLPITILDVNDNPPKFEKSLASFRVTENALNGTVIFKVNATDLD---LGDNAKV 891
+ S+ + I I D+NDN P F K + + V E A GT + +V ATD D G++AKV
Sbjct: 86 VEPESEFI-IKIHDINDNEPIFTKDVYTATVPEMADVGTFVVQVTATDADDPTYGNSAKV 144
Query: 892 VYSLMTDTQDFAVDSATGSLYVS-ASLDRERQDLYELKIRASDCDGRNDMYTLHADALVR 950
VYS++ F+V+S TG + + ++DRE ++ Y++ I+A D G+ M L V
Sbjct: 145 VYSILQGQPYFSVESETGIIKTALLNMDRENREQYQVVIQAKDMGGQ--MGGLSGTTTVN 202
Query: 951 VTIDD 955
+T+ D
Sbjct: 203 ITLTD 207
Score = 70.5 bits (171), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 49/155 (31%), Positives = 82/155 (52%), Gaps = 8/155 (5%)
Query: 329 NIVVLKLLDREIAPLGYNLTLRAVDKGTP-PRETYKATQVHLVDLNDNKPVFDREIYEVD 387
+I K LDRE P+ Y L +AV++ T P E + + D+NDN+P+F +++Y
Sbjct: 56 DIQATKRLDREEKPV-YILRAQAVNRRTGRPVEPESEFIIKIHDINDNEPIFTKDVYTAT 114
Query: 388 VPETTPVNTPIIRLKVSDADD---GKNAQVFLEIVGGNEGGEFNINPETGMLYTA-VTLD 443
VPE V T ++++ +DADD G +A+V I+ G F++ ETG++ TA + +D
Sbjct: 115 VPEMADVGTFVVQVTATDADDPTYGNSAKVVYSILQGQP--YFSVESETGIIKTALLNMD 172
Query: 444 AEDKAFYTLTVSAIDQGNAGTRKQSAAKVKVNIVD 478
E++ Y + + A D G V + + D
Sbjct: 173 RENREQYQVVIQAKDMGGQMGGLSGTTTVNITLTD 207
Score = 67.0 bits (162), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 53/168 (31%), Positives = 86/168 (51%), Gaps = 8/168 (4%)
Query: 404 SDADDGKNAQVFLEIVGGNEGGEFNINPETGMLYTAVTLDAEDKAFYTLTVSAIDQGNAG 463
SD D G + ++ + G G F IN TG + LD E+K Y L A+++ G
Sbjct: 26 SDQDRGDGSLKYI-LSGDGAGDLFIINENTGDIQATKRLDREEKPVYILRAQAVNR-RTG 83
Query: 464 TRKQSAAKVKVNIVDTNDNDPLFDSPEMEVSINENEPAGTSVIKVTAKDKDS---GENAY 520
+ ++ + I D NDN+P+F ++ E GT V++VTA D D G +A
Sbjct: 84 RPVEPESEFIIKIHDINDNEPIFTKDVYTATVPEMADVGTFVVQVTATDADDPTYGNSAK 143
Query: 521 ISYSIANLKPVPFEIDHFSGVIKTTQV-LDYESMRREYILRVRASDWG 567
+ YSI +P F ++ +G+IKT + +D E+ R +Y + ++A D G
Sbjct: 144 VVYSILQGQPY-FSVESETGIIKTALLNMDREN-REQYQVVIQAKDMG 189
Score = 63.5 bits (153), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 54/172 (31%), Positives = 86/172 (50%), Gaps = 13/172 (7%)
Query: 881 TDLDLGDNAKVVYSLMTDTQD--FAVDSATGSLYVSASLDRERQDLYELKIRASDCDGRN 938
+D D GD + + Y L D F ++ TG + + LDRE + +Y L+ +A + R
Sbjct: 26 SDQDRGDGS-LKYILSGDGAGDLFIINENTGDIQATKRLDREEKPVYILRAQAVN---RR 81
Query: 939 DMYTLHADALVRVTIDDINDNAPNFALPNYSVKVREDIPVGTVVAILSAS---DPDLGQG 995
+ ++ + I DINDN P F Y+ V E VGT V ++A+ DP G
Sbjct: 82 TGRPVEPESEFIIKIHDINDNEPIFTKDVYTATVPEMADVGTFVVQVTATDADDPTYGNS 141
Query: 996 GVVRYTIVSDNEADDVFSIDRLTGTIRVA-KPLDFEKRQVHSLVVRAKDNGS 1046
V Y+I+ + FS++ TG I+ A +D E R+ + +V++AKD G
Sbjct: 142 AKVVYSIL---QGQPYFSVESETGIIKTALLNMDRENREQYQVVIQAKDMGG 190
Score = 56.2 bits (134), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/153 (30%), Positives = 72/153 (47%), Gaps = 13/153 (8%)
Query: 98 FLLIRTRTGN---TDVLNRERKDKYILHIKATITHRDGKKASYE-ETTCKVHVNVLDTND 153
+I TG+ T L+RE K YIL +A + R G+ E E K+H D ND
Sbjct: 47 LFIINENTGDIQATKRLDREEKPVYILRAQA-VNRRTGRPVEPESEFIIKIH----DIND 101
Query: 154 LNPLFYPTEYEETVPEDLPLHTSILRVSAEDAD---LGRNGEIYYSFRDMNEQFSIHPTS 210
P+F Y TVPE + T +++V+A DAD G + ++ YS FS+ +
Sbjct: 102 NEPIFTKDVYTATVPEMADVGTFVVQVTATDADDPTYGNSAKVVYSILQGQPYFSVESET 161
Query: 211 GVV-TLTRPLKYTDRSVHDLVVLGQDRGSVFKG 242
G++ T + +R + +V+ +D G G
Sbjct: 162 GIIKTALLNMDRENREQYQVVIQAKDMGGQMGG 194
Score = 54.3 bits (129), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 38/102 (37%), Positives = 61/102 (59%), Gaps = 5/102 (4%)
Query: 988 SDPDLGQGGVVRYTIVSDNEADDVFSIDRLTGTIRVAKPLDFEKRQVHSLVVRAKDNGSP 1047
SD D G G + +Y I+S + A D+F I+ TG I+ K LD E++ V+ L +A + +
Sbjct: 26 SDQDRGDGSL-KY-ILSGDGAGDLFIINENTGDIQATKRLDREEKPVYILRAQAVNRRTG 83
Query: 1048 -PLYSEATLIVEVSDVNENMNAPVFSDFVYQATVKENQPIGT 1088
P+ E+ I+++ D+N+N P+F+ VY ATV E +GT
Sbjct: 84 RPVEPESEFIIKIHDINDN--EPIFTKDVYTATVPEMADVGT 123
Score = 43.5 bits (101), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 61/124 (49%), Gaps = 8/124 (6%)
Query: 533 FEIDHFSGVIKTTQVLDYESMRREYILRVRASDWGLPYRRQTEMQLKIKLLDVNDNRPQF 592
F I+ +G I+ T+ LD E + YILR +A + + E + IK+ D+NDN P F
Sbjct: 48 FIINENTGDIQATKRLDREE-KPVYILRAQAVNRRTGRPVEPESEFIIKIHDINDNEPIF 106
Query: 593 EKVDCLGHVPRNLPIGREIITLSAIDFD---AGNI--ISYRIVSGNEDGCFALDITSGVL 647
K VP +G ++ ++A D D GN + Y I+ G F+++ +G++
Sbjct: 107 TKDVYTATVPEMADVGTFVVQVTATDADDPTYGNSAKVVYSILQGQP--YFSVESETGII 164
Query: 648 SIAC 651
A
Sbjct: 165 KTAL 168
>pdb|2A4E|A Chain A, Crystal Structure Of Mouse Cadherin-11 Ec1-2
Length = 215
Score = 81.3 bits (199), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 95/179 (53%), Gaps = 9/179 (5%)
Query: 783 NGKLVFGISSGDNDSVFRIDPDSGELKVVGYLDRERTSEYTLNITVYD--LGKPQKSTSK 840
+G + + +S ++F ID SG + LDRE ++YTL D +P + S+
Sbjct: 33 DGNIKYILSGEGAGTIFVIDDKSGNIHATKTLDREERAQYTLMAQAVDRDTNRPLEPPSE 92
Query: 841 MLPITILDVNDNPPKFEKSLASFRVTENALNGTVIFKVNATDLD---LGDNAKVVYSLMT 897
+ + + D+NDNPP+F + V E + GT + +V A+D D G++AK+VYS++
Sbjct: 93 FI-VKVQDINDNPPEFLHEIYHANVPERSNVGTSVIQVTASDADDPTYGNSAKLVYSILE 151
Query: 898 DTQDFAVDSATGSLYVS-ASLDRERQDLYELKIRASDCDGRNDMYTLHADALVRVTIDD 955
F+V++ TG + + ++DRE ++ Y + I+A D G M L V +T+ D
Sbjct: 152 GQPYFSVEAQTGIIRTALPNMDREAKEEYHVVIQAKDMGGH--MGGLSGTTKVTITLTD 208
Score = 75.5 bits (184), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 58/171 (33%), Positives = 87/171 (50%), Gaps = 11/171 (6%)
Query: 881 TDLDLGD-NAKVVYSLMTDTQDFAVDSATGSLYVSASLDRERQDLYELKIRASDCDGRND 939
+D+D GD N K + S F +D +G+++ + +LDRE + Y L +A D R+
Sbjct: 27 SDIDSGDGNIKYILSGEGAGTIFVIDDKSGNIHATKTLDREERAQYTLMAQAVD---RDT 83
Query: 940 MYTLHADALVRVTIDDINDNAPNFALPNYSVKVREDIPVGTVVAILSAS---DPDLGQGG 996
L + V + DINDN P F Y V E VGT V ++AS DP G
Sbjct: 84 NRPLEPPSEFIVKVQDINDNPPEFLHEIYHANVPERSNVGTSVIQVTASDADDPTYGNSA 143
Query: 997 VVRYTIVSDNEADDVFSIDRLTGTIRVAKP-LDFEKRQVHSLVVRAKDNGS 1046
+ Y+I+ E FS++ TG IR A P +D E ++ + +V++AKD G
Sbjct: 144 KLVYSIL---EGQPYFSVEAQTGIIRTALPNMDREAKEEYHVVIQAKDMGG 191
Score = 73.6 bits (179), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 62/188 (32%), Positives = 90/188 (47%), Gaps = 20/188 (10%)
Query: 309 DGHFRIVPTKIDPGT----KKKEYNIVVLKLLDREIAPLGYNLTLRAVDKGT-----PPR 359
DG+ + + + GT K NI K LDRE Y L +AVD+ T PP
Sbjct: 33 DGNIKYILSGEGAGTIFVIDDKSGNIHATKTLDRE-ERAQYTLMAQAVDRDTNRPLEPPS 91
Query: 360 ETYKATQVHLVDLNDNKPVFDREIYEVDVPETTPVNTPIIRLKVSDADD---GKNAQVFL 416
E Q D+NDN P F EIY +VPE + V T +I++ SDADD G +A++
Sbjct: 92 EFIVKVQ----DINDNPPEFLHEIYHANVPERSNVGTSVIQVTASDADDPTYGNSAKLVY 147
Query: 417 EIVGGNEGGEFNINPETGMLYTAV-TLDAEDKAFYTLTVSAIDQGNAGTRKQSAAKVKVN 475
I+ G F++ +TG++ TA+ +D E K Y + + A D G KV +
Sbjct: 148 SILEGQP--YFSVEAQTGIIRTALPNMDREAKEEYHVVIQAKDMGGHMGGLSGTTKVTIT 205
Query: 476 IVDTNDND 483
+ D +D
Sbjct: 206 LTDDYKDD 213
Score = 66.2 bits (160), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 54/168 (32%), Positives = 88/168 (52%), Gaps = 8/168 (4%)
Query: 404 SDADDGKNAQVFLEIVGGNEGGEFNINPETGMLYTAVTLDAEDKAFYTLTVSAIDQGNAG 463
SD D G ++ + G G F I+ ++G ++ TLD E++A YTL A+D+ +
Sbjct: 27 SDIDSGDGNIKYI-LSGEGAGTIFVIDDKSGNIHATKTLDREERAQYTLMAQAVDR-DTN 84
Query: 464 TRKQSAAKVKVNIVDTNDNDPLFDSPEMEVSINENEPAGTSVIKVTAKDKDS---GENAY 520
+ ++ V + D NDN P F ++ E GTSVI+VTA D D G +A
Sbjct: 85 RPLEPPSEFIVKVQDINDNPPEFLHEIYHANVPERSNVGTSVIQVTASDADDPTYGNSAK 144
Query: 521 ISYSIANLKPVPFEIDHFSGVIKTT-QVLDYESMRREYILRVRASDWG 567
+ YSI +P F ++ +G+I+T +D E+ + EY + ++A D G
Sbjct: 145 LVYSILEGQPY-FSVEAQTGIIRTALPNMDREA-KEEYHVVIQAKDMG 190
Score = 54.3 bits (129), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 39/104 (37%), Positives = 58/104 (55%), Gaps = 5/104 (4%)
Query: 988 SDPDLGQGGVVRYTIVSDNEADDVFSIDRLTGTIRVAKPLDFEKRQVHSLVVRAKD-NGS 1046
SD D G G + +Y I+S A +F ID +G I K LD E+R ++L+ +A D + +
Sbjct: 27 SDIDSGDGNI-KY-ILSGEGAGTIFVIDDKSGNIHATKTLDREERAQYTLMAQAVDRDTN 84
Query: 1047 PPLYSEATLIVEVSDVNENMNAPVFSDFVYQATVKENQPIGTSL 1090
PL + IV+V D+N+N P F +Y A V E +GTS+
Sbjct: 85 RPLEPPSEFIVKVQDINDN--PPEFLHEIYHANVPERSNVGTSV 126
Score = 50.8 bits (120), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 52/187 (27%), Positives = 86/187 (45%), Gaps = 17/187 (9%)
Query: 77 ISSGDRD-KFFKAEERLVGDFWFLLIRTRTGN---TDVLNRERKDKYILHIKATITHRDG 132
I SGD + K+ + E G +I ++GN T L+RE + +Y L +A RD
Sbjct: 29 IDSGDGNIKYILSGE---GAGTIFVIDDKSGNIHATKTLDREERAQYTLMAQAV--DRDT 83
Query: 133 KKASYEETTCKVHVNVLDTNDLNPLFYPTEYEETVPEDLPLHTSILRVSAEDAD---LGR 189
+ E + V V D ND P F Y VPE + TS+++V+A DAD G
Sbjct: 84 NRPL--EPPSEFIVKVQDINDNPPEFLHEIYHANVPERSNVGTSVIQVTASDADDPTYGN 141
Query: 190 NGEIYYSFRDMNEQFSIHPTSGVVTLTRP-LKYTDRSVHDLVVLGQDRGSVFKGGGKPSS 248
+ ++ YS + FS+ +G++ P + + + +V+ +D G GG +
Sbjct: 142 SAKLVYSILEGQPYFSVEAQTGIIRTALPNMDREAKEEYHVVIQAKDMGGHM--GGLSGT 199
Query: 249 AKLKIKV 255
K+ I +
Sbjct: 200 TKVTITL 206
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 61/134 (45%), Gaps = 8/134 (5%)
Query: 533 FEIDHFSGVIKTTQVLDYESMRREYILRVRASDWGLPYRRQTEMQLKIKLLDVNDNRPQF 592
F ID SG I T+ LD E R +Y L +A D + + +K+ D+NDN P+F
Sbjct: 49 FVIDDKSGNIHATKTLDREE-RAQYTLMAQAVDRDTNRPLEPPSEFIVKVQDINDNPPEF 107
Query: 593 EKVDCLGHVPRNLPIGREIITLSAIDFD---AGNI--ISYRIVSGNEDGCFALDITSGVL 647
+VP +G +I ++A D D GN + Y I+ G F+++ +G++
Sbjct: 108 LHEIYHANVPERSNVGTSVIQVTASDADDPTYGNSAKLVYSILEGQP--YFSVEAQTGII 165
Query: 648 SIACDLTDVRVNER 661
A D E
Sbjct: 166 RTALPNMDREAKEE 179
>pdb|1FF5|A Chain A, Structure Of E-Cadherin Double Domain
pdb|1FF5|B Chain B, Structure Of E-Cadherin Double Domain
Length = 219
Score = 78.6 bits (192), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 71/222 (31%), Positives = 111/222 (50%), Gaps = 25/222 (11%)
Query: 755 PIELQVNESVPLKSTLTKIIA-RDRDLGYNGKLVFGISSGDND----SVFRIDPDSGELK 809
PI NE L +I + RD++ K+ + I+ D VF I+ ++G LK
Sbjct: 7 PISCPENEKGEFPKNLVQIKSNRDKET----KVFYSITGQGADKPPVGVFIIERETGWLK 62
Query: 810 VVGYLDRERTSEYTL-NITVYDLGKPQKSTSKMLPITILDVNDNPPKFEKSLASFRVTEN 868
V LDRE ++Y L + V G+ + +++ IT+ D NDN P+F + + V E
Sbjct: 63 VTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIV-ITVTDQNDNRPEFTQEVFEGSVAEG 121
Query: 869 ALNGTVIFKVNATDLD---LGDNAKVVYSLMTDTQD------FAVDSATGSLYV-SASLD 918
A+ GT + KV+ATD D NA + Y++++ + F V+ TG + V ++ LD
Sbjct: 122 AVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVLTSGLD 181
Query: 919 RERQDLYELKIRASDCDGRNDMYTLHADALVRVTIDDINDNA 960
RE Y L ++A+D G L A +T+ DINDNA
Sbjct: 182 RESYPTYTLVVQAADLQGEG----LSTTAKAVITVKDINDNA 219
Score = 64.7 bits (156), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 67/195 (34%), Positives = 89/195 (45%), Gaps = 23/195 (11%)
Query: 410 KNAQVFLEIVGGNEG----GEFNINPETGMLYTAVTLDAEDKAFYTLTVSAIDQGNAGTR 465
K +VF I G G F I ETG L LD E A Y L A+ G
Sbjct: 31 KETKVFYSITGQGADKPPVGVFIIERETGWLKVTQPLDREAIAKYILYSHAVSSN--GEA 88
Query: 466 KQSAAKVKVNIVDTNDNDPLFDSPEMEVSINENEPAGTSVIKVTAKDKDSGENAY---IS 522
+ ++ + + D NDN P F E S+ E GTSV+KV+A D D N Y I+
Sbjct: 89 VEDPMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIA 148
Query: 523 YSIANLKP-VP----FEIDHFSGVIKT-TQVLDYESMRREYILRVRASDW---GLPYRRQ 573
Y+I + P +P F ++ +GVI T LD ES Y L V+A+D GL
Sbjct: 149 YTIVSQDPELPHKNMFTVNRDTGVISVLTSGLDRESYPT-YTLVVQAADLQGEGL----S 203
Query: 574 TEMQLKIKLLDVNDN 588
T + I + D+NDN
Sbjct: 204 TTAKAVITVKDINDN 218
Score = 63.9 bits (154), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 59/189 (31%), Positives = 86/189 (45%), Gaps = 17/189 (8%)
Query: 890 KVVYSLMTDTQD------FAVDSATGSLYVSASLDRERQDLYELKIRASDCDGRNDMYTL 943
KV YS+ D F ++ TG L V+ LDRE Y L A +G +
Sbjct: 34 KVFYSITGQGADKPPVGVFIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGE----AV 89
Query: 944 HADALVRVTIDDINDNAPNFALPNYSVKVREDIPVGTVVAILSASDPD---LGQGGVVRY 1000
+ +T+ D NDN P F + V E GT V +SA+D D + Y
Sbjct: 90 EDPMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAY 149
Query: 1001 TIVSDNEA---DDVFSIDRLTGTIRV-AKPLDFEKRQVHSLVVRAKDNGSPPLYSEATLI 1056
TIVS + ++F+++R TG I V LD E ++LVV+A D L + A +
Sbjct: 150 TIVSQDPELPHKNMFTVNRDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGLSTTAKAV 209
Query: 1057 VEVSDVNEN 1065
+ V D+N+N
Sbjct: 210 ITVKDINDN 218
Score = 53.9 bits (128), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 50/159 (31%), Positives = 72/159 (45%), Gaps = 11/159 (6%)
Query: 332 VLKLLDREIAPLGYNLTLRAVDKGTPPRETYKATQVHLVDLNDNKPVFDREIYEVDVPET 391
V + LDRE A Y L AV E + + D NDN+P F +E++E V E
Sbjct: 63 VTQPLDRE-AIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAEG 121
Query: 392 TPVNTPIIRLKVSDADD---GKNAQVFLEIVGGN----EGGEFNINPETGMLYTAVT-LD 443
T ++++ +DADD NA + IV + F +N +TG++ + LD
Sbjct: 122 AVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVLTSGLD 181
Query: 444 AEDKAFYTLTVSAIDQGNAGTRKQSAAKVKVNIVDTNDN 482
E YTL V A D G + AK + + D NDN
Sbjct: 182 RESYPTYTLVVQAADLQGEGL--STTAKAVITVKDINDN 218
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 77/174 (44%), Gaps = 22/174 (12%)
Query: 99 LLIRTRTGN---TDVLNRERKDKYILHIKATITHRDGKKASYEETTCKVHVNVLDTNDLN 155
+I TG T L+RE KYIL+ +H E ++ + V D ND
Sbjct: 52 FIIERETGWLKVTQPLDREAIAKYILY-----SHAVSSNGEAVEDPMEIVITVTDQNDNR 106
Query: 156 PLFYPTEYEETVPEDLPLHTSILRVSAEDAD---LGRNGEIYYSFRDMNEQ------FSI 206
P F +E +V E TS+++VSA DAD N I Y+ + + F++
Sbjct: 107 PEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTV 166
Query: 207 HPTSGVVT-LTRPLKYTDRSVHDLVVLGQDRGSVFKGGGKPSSAKLKIKVEQIN 259
+ +GV++ LT L + LVV D +G G ++AK I V+ IN
Sbjct: 167 NRDTGVISVLTSGLDRESYPTYTLVVQAAD----LQGEGLSTTAKAVITVKDIN 216
Score = 44.3 bits (103), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 53/172 (30%), Positives = 83/172 (48%), Gaps = 19/172 (11%)
Query: 493 VSINENE----PAGTSVIKVTAKDKDSGENAYISYSIANLKPVP-FEIDHFSGVIKTTQV 547
+S ENE P IK + +DK++ I+ A+ PV F I+ +G +K TQ
Sbjct: 8 ISCPENEKGEFPKNLVQIK-SNRDKETKVFYSITGQGADKPPVGVFIIERETGWLKVTQP 66
Query: 548 LDYESMRREYILRVRA-SDWGLPYRRQTEMQLKIKLLDVNDNRPQFEKVDCLGHVPRNLP 606
LD E++ + YIL A S G + M++ I + D NDNRP+F + G V
Sbjct: 67 LDREAIAK-YILYSHAVSSNGEAV--EDPMEIVITVTDQNDNRPEFTQEVFEGSVAEGAV 123
Query: 607 IGREIITLSAIDFD-----AGNIISYRIVSGNED----GCFALDITSGVLSI 649
G ++ +SA D D I+Y IVS + + F ++ +GV+S+
Sbjct: 124 PGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISV 175
Score = 39.7 bits (91), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 42/80 (52%), Gaps = 2/80 (2%)
Query: 1011 VFSIDRLTGTIRVAKPLDFEKRQVHSLVVRAKDNGSPPLYSEATLIVEVSDVNENMNAPV 1070
VF I+R TG ++V +PLD E + L A + + +++ V+D N+N P
Sbjct: 51 VFIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNR--PE 108
Query: 1071 FSDFVYQATVKENQPIGTSL 1090
F+ V++ +V E GTS+
Sbjct: 109 FTQEVFEGSVAEGAVPGTSV 128
>pdb|2O72|A Chain A, Crystal Structure Analysis Of Human E-Cadherin (1-213)
Length = 213
Score = 77.8 bits (190), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 66/199 (33%), Positives = 101/199 (50%), Gaps = 21/199 (10%)
Query: 755 PIELQVNESVPLKSTLTKIIA-RDRDLGYNGKLVFGISSGDNDS----VFRIDPDSGELK 809
PI NE P L +I + +D++ GK+ + I+ D+ VF I+ ++G LK
Sbjct: 6 PISSPENEKGPFPKNLVQIKSNKDKE----GKVFYSITGQGADTPPVGVFIIERETGWLK 61
Query: 810 VVGYLDRERTSEYTL-NITVYDLGKPQKSTSKMLPITILDVNDNPPKFEKSLASFRVTEN 868
V LDRER + YTL + V G + ++L IT+ D NDN P+F + + V E
Sbjct: 62 VTEPLDRERIATYTLFSHAVSSNGNAVEDPMEIL-ITVTDQNDNKPEFTQEVFKGSVMEG 120
Query: 869 ALNGTVIFKVNATDLD---LGDNAKVVYSLMT------DTQDFAVDSATGSL-YVSASLD 918
AL GT + +V ATD D NA + Y++++ D F ++ TG + V+ LD
Sbjct: 121 ALPGTSVMEVTATDADDDVNTYNAAIAYTILSQDPELPDKNMFTINRNTGVISVVTTGLD 180
Query: 919 RERQDLYELKIRASDCDGR 937
RE Y L ++A+D G
Sbjct: 181 RESFPTYTLVVQAADLQGE 199
Score = 62.8 bits (151), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 64/189 (33%), Positives = 88/189 (46%), Gaps = 19/189 (10%)
Query: 390 ETTPVNTPIIRLKVSDADDGKNAQVFLEIVGGNEG----GEFNINPETGMLYTAVTLDAE 445
E P ++++K + +GK VF I G G F I ETG L LD E
Sbjct: 13 EKGPFPKNLVQIKSNKDKEGK---VFYSITGQGADTPPVGVFIIERETGWLKVTEPLDRE 69
Query: 446 DKAFYTLTVSAIDQGNAGTRKQSAAKVKVNIVDTNDNDPLFDSPEMEVSINENEPAGTSV 505
A YTL A+ G + ++ + + D NDN P F + S+ E GTSV
Sbjct: 70 RIATYTLFSHAVSSN--GNAVEDPMEILITVTDQNDNKPEFTQEVFKGSVMEGALPGTSV 127
Query: 506 IKVTAKDKDSGENAY---ISYSIANLKP-VP----FEIDHFSGVIK-TTQVLDYESMRRE 556
++VTA D D N Y I+Y+I + P +P F I+ +GVI T LD ES
Sbjct: 128 MEVTATDADDDVNTYNAAIAYTILSQDPELPDKNMFTINRNTGVISVVTTGLDRESFPT- 186
Query: 557 YILRVRASD 565
Y L V+A+D
Sbjct: 187 YTLVVQAAD 195
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 56/168 (33%), Positives = 77/168 (45%), Gaps = 17/168 (10%)
Query: 889 AKVVYSLMTDTQD------FAVDSATGSLYVSASLDRERQDLYELKIRASDCDGRNDMYT 942
KV YS+ D F ++ TG L V+ LDRER Y L A +G
Sbjct: 32 GKVFYSITGQGADTPPVGVFIIERETGWLKVTEPLDRERIATYTLFSHAVSSNGN----A 87
Query: 943 LHADALVRVTIDDINDNAPNFALPNYSVKVREDIPVGTVVAILSASDPD---LGQGGVVR 999
+ + +T+ D NDN P F + V E GT V ++A+D D +
Sbjct: 88 VEDPMEILITVTDQNDNKPEFTQEVFKGSVMEGALPGTSVMEVTATDADDDVNTYNAAIA 147
Query: 1000 YTIVS-DNEADD--VFSIDRLTGTIRVAKP-LDFEKRQVHSLVVRAKD 1043
YTI+S D E D +F+I+R TG I V LD E ++LVV+A D
Sbjct: 148 YTILSQDPELPDKNMFTINRNTGVISVVTTGLDRESFPTYTLVVQAAD 195
Score = 43.9 bits (102), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 46/141 (32%), Positives = 63/141 (44%), Gaps = 11/141 (7%)
Query: 332 VLKLLDRE-IAPLGYNLTLRAVDKGTPPRETYKATQVHLVDLNDNKPVFDREIYEVDVPE 390
V + LDRE IA Y L AV E + + D NDNKP F +E+++ V E
Sbjct: 62 VTEPLDRERIA--TYTLFSHAVSSNGNAVEDPMEILITVTDQNDNKPEFTQEVFKGSVME 119
Query: 391 TTPVNTPIIRLKVSDADD---GKNAQVFLEIVGGN----EGGEFNINPETGMLYTAVT-L 442
T ++ + +DADD NA + I+ + + F IN TG++ T L
Sbjct: 120 GALPGTSVMEVTATDADDDVNTYNAAIAYTILSQDPELPDKNMFTINRNTGVISVVTTGL 179
Query: 443 DAEDKAFYTLTVSAIDQGNAG 463
D E YTL V A D G
Sbjct: 180 DRESFPTYTLVVQAADLQGEG 200
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 51/98 (52%), Gaps = 5/98 (5%)
Query: 996 GVVRYTIV---SDNEADDVFSIDRLTGTIRVAKPLDFEKRQVHSLVVRAKDNGSPPLYSE 1052
G V Y+I +D VF I+R TG ++V +PLD E+ ++L A + +
Sbjct: 32 GKVFYSITGQGADTPPVGVFIIERETGWLKVTEPLDRERIATYTLFSHAVSSNGNAVEDP 91
Query: 1053 ATLIVEVSDVNENMNAPVFSDFVYQATVKENQPIGTSL 1090
+++ V+D N+ N P F+ V++ +V E GTS+
Sbjct: 92 MEILITVTDQND--NKPEFTQEVFKGSVMEGALPGTSV 127
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 81/179 (45%), Gaps = 18/179 (10%)
Query: 484 PLFDSPEMEVSINENEPAGTSVIKVTA-KDKDSGENAYISYSIANLKPVP-FEIDHFSGV 541
P SPE NE P +++++ + KDK+ I+ A+ PV F I+ +G
Sbjct: 5 PPISSPE-----NEKGPFPKNLVQIKSNKDKEGKVFYSITGQGADTPPVGVFIIERETGW 59
Query: 542 IKTTQVLDYESMRREYILRVRASDWGLPYRRQTEMQLKIKLLDVNDNRPQFEKVDCLGHV 601
+K T+ LD E + + S G + M++ I + D NDN+P+F + G V
Sbjct: 60 LKVTEPLDRERIATYTLFSHAVSSNG--NAVEDPMEILITVTDQNDNKPEFTQEVFKGSV 117
Query: 602 PRNLPIGREIITLSAIDFD-----AGNIISYRIVSGNED----GCFALDITSGVLSIAC 651
G ++ ++A D D I+Y I+S + + F ++ +GV+S+
Sbjct: 118 MEGALPGTSVMEVTATDADDDVNTYNAAIAYTILSQDPELPDKNMFTINRNTGVISVVT 176
Score = 35.0 bits (79), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 60/138 (43%), Gaps = 15/138 (10%)
Query: 108 TDVLNRERKDKYILHIKATITHRDGKKASYEETTCKVHVNVLDTNDLNPLFYPTEYEETV 167
T+ L+RER Y L +H + E ++ + V D ND P F ++ +V
Sbjct: 63 TEPLDRERIATYTL-----FSHAVSSNGNAVEDPMEILITVTDQNDNKPEFTQEVFKGSV 117
Query: 168 PEDLPLHTSILRVSAEDAD---LGRNGEIYYSFRDMNEQ------FSIHPTSGVVT-LTR 217
E TS++ V+A DAD N I Y+ + + F+I+ +GV++ +T
Sbjct: 118 MEGALPGTSVMEVTATDADDDVNTYNAAIAYTILSQDPELPDKNMFTINRNTGVISVVTT 177
Query: 218 PLKYTDRSVHDLVVLGQD 235
L + LVV D
Sbjct: 178 GLDRESFPTYTLVVQAAD 195
>pdb|2QVI|A Chain A, Crystal Structure Of N-Cadherin Domains Ec12
Length = 215
Score = 77.4 bits (189), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 62/211 (29%), Positives = 99/211 (46%), Gaps = 11/211 (5%)
Query: 755 PIELQVNESVPLKSTLTKIIA-RDRDLGYNGKLVFGISSGDNDSVFRIDPDSGELKVVGY 813
PI L N P L +I + RD++L + + +F I+P SG+L V
Sbjct: 6 PINLPENSRGPFPQELVRIRSDRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKP 65
Query: 814 LDRERTSEYTLNITVYDLGKPQKSTSKMLPITILDVNDNPPKFEKSLASFRVTENALNGT 873
LDRE + + L D+ Q + I ++D+NDN P+F + + V E + GT
Sbjct: 66 LDRELIARFHLRAHAVDINGNQVENPIDIVINVIDMNDNRPEFLHQVWNGSVPEGSKPGT 125
Query: 874 VIFKVNATDLDLGD--NAKVVYSLMTDTQD------FAVDSATGSLY-VSASLDRERQDL 924
+ V A D D + N + Y +++ F +++ TG + V+A LDRE+
Sbjct: 126 YVMTVTAIDADDPNALNGMLRYRILSQAPSTPSPNMFTINNETGDIITVAAGLDREKVQQ 185
Query: 925 YELKIRASDCDGRNDMYTLHADALVRVTIDD 955
Y L I+A+D +G N Y L A +T+ D
Sbjct: 186 YTLIIQATDMEG-NPTYGLSNTATAVITVTD 215
Score = 62.8 bits (151), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 52/169 (30%), Positives = 85/169 (50%), Gaps = 13/169 (7%)
Query: 902 FAVDSATGSLYVSASLDRERQDLYELKIRASDCDGRNDMYTLHADALVRVTIDDINDNAP 961
F ++ +G L V+ LDRE + L+ A D +G + + + + D+NDN P
Sbjct: 51 FIINPISGQLSVTKPLDRELIARFHLRAHAVDINGNQ----VENPIDIVINVIDMNDNRP 106
Query: 962 NFALPNYSVKVREDIPVGTVVAILSASDPD--LGQGGVVRYTIVSD---NEADDVFSIDR 1016
F ++ V E GT V ++A D D G++RY I+S + ++F+I+
Sbjct: 107 EFLHQVWNGSVPEGSKPGTYVMTVTAIDADDPNALNGMLRYRILSQAPSTPSPNMFTINN 166
Query: 1017 LTG-TIRVAKPLDFEKRQVHSLVVRAKDNGSPPLY---SEATLIVEVSD 1061
TG I VA LD EK Q ++L+++A D P Y + AT ++ V+D
Sbjct: 167 ETGDIITVAAGLDREKVQQYTLIIQATDMEGNPTYGLSNTATAVITVTD 215
Score = 56.6 bits (135), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 59/200 (29%), Positives = 94/200 (47%), Gaps = 20/200 (10%)
Query: 380 DREIYEVDVPETT--PVNTPIIRLKVSDADDGKNAQVFLEIVGGNE----GGEFNINPET 433
D I +++PE + P ++R++ +D KN + + G G F INP +
Sbjct: 1 DWVIPPINLPENSRGPFPQELVRIR---SDRDKNLSLRYSVTGPGADQPPTGIFIINPIS 57
Query: 434 GMLYTAVTLDAEDKAFYTLTVSAIDQGNAGTRKQSAAKVKVNIVDTNDNDPLFDSPEMEV 493
G L LD E A + L A+D G + ++ + +N++D NDN P F
Sbjct: 58 GQLSVTKPLDRELIARFHLRAHAVDIN--GNQVENPIDIVINVIDMNDNRPEFLHQVWNG 115
Query: 494 SINENEPAGTSVIKVTAKDKD--SGENAYISYSI---ANLKPVP--FEIDHFSG-VIKTT 545
S+ E GT V+ VTA D D + N + Y I A P P F I++ +G +I
Sbjct: 116 SVPEGSKPGTYVMTVTAIDADDPNALNGMLRYRILSQAPSTPSPNMFTINNETGDIITVA 175
Query: 546 QVLDYESMRREYILRVRASD 565
LD E + ++Y L ++A+D
Sbjct: 176 AGLDREKV-QQYTLIIQATD 194
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/146 (29%), Positives = 74/146 (50%), Gaps = 11/146 (7%)
Query: 533 FEIDHFSGVIKTTQVLDYESMRREYILRVRASDWGLPYRRQTEMQLKIKLLDVNDNRPQF 592
F I+ SG + T+ LD E + R + LR A D + + + + I ++D+NDNRP+F
Sbjct: 51 FIINPISGQLSVTKPLDRELIAR-FHLRAHAVDING-NQVENPIDIVINVIDMNDNRPEF 108
Query: 593 EKVDCLGHVPRNLPIGREIITLSAIDFDAGN----IISYRIVSGNED----GCFALDITS 644
G VP G ++T++AID D N ++ YRI+S F ++ +
Sbjct: 109 LHQVWNGSVPEGSKPGTYVMTVTAIDADDPNALNGMLRYRILSQAPSTPSPNMFTINNET 168
Query: 645 G-VLSIACDLTDVRVNEREINVTATD 669
G ++++A L +V + + + ATD
Sbjct: 169 GDIITVAAGLDREKVQQYTLIIQATD 194
Score = 50.1 bits (118), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 47/156 (30%), Positives = 72/156 (46%), Gaps = 11/156 (7%)
Query: 332 VLKLLDREIAPLGYNLTLRAVDKGTPPRETYKATQVHLVDLNDNKPVFDREIYEVDVPET 391
V K LDRE+ ++L AVD E ++++D+NDN+P F +++ VPE
Sbjct: 62 VTKPLDRELI-ARFHLRAHAVDINGNQVENPIDIVINVIDMNDNRPEFLHQVWNGSVPEG 120
Query: 392 TPVNTPIIRLKVSDADDGKNA-------QVFLEIVGGNEGGEFNINPETGMLYT-AVTLD 443
+ T ++ + DADD NA ++ + F IN ETG + T A LD
Sbjct: 121 SKPGTYVMTVTAIDADD-PNALNGMLRYRILSQAPSTPSPNMFTINNETGDIITVAAGLD 179
Query: 444 AEDKAFYTLTVSAID-QGNAGTRKQSAAKVKVNIVD 478
E YTL + A D +GN + A + + D
Sbjct: 180 REKVQQYTLIIQATDMEGNPTYGLSNTATAVITVTD 215
Score = 35.0 bits (79), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 50/115 (43%), Gaps = 14/115 (12%)
Query: 81 DRDKFFK---------AEERLVGDFWFLLIRTRTGNTDVLNRERKDKYILHIKATITHRD 131
DRDK A++ G F I + T L+RE ++ H++A +
Sbjct: 27 DRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKPLDRELIARF--HLRAHAVDIN 84
Query: 132 GKKASYEETTCKVHVNVLDTNDLNPLFYPTEYEETVPEDLPLHTSILRVSAEDAD 186
G + E + +NV+D ND P F + +VPE T ++ V+A DAD
Sbjct: 85 GNQV---ENPIDIVINVIDMNDNRPEFLHQVWNGSVPEGSKPGTYVMTVTAIDAD 136
Score = 34.3 bits (77), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 44/94 (46%), Gaps = 5/94 (5%)
Query: 998 VRYTIV---SDNEADDVFSIDRLTGTIRVAKPLDFEKRQVHSLVVRAKDNGSPPLYSEAT 1054
+RY++ +D +F I+ ++G + V KPLD E L A D + +
Sbjct: 34 LRYSVTGPGADQPPTGIFIINPISGQLSVTKPLDRELIARFHLRAHAVDINGNQVENPID 93
Query: 1055 LIVEVSDVNENMNAPVFSDFVYQATVKENQPIGT 1088
+++ V D+N+N P F V+ +V E GT
Sbjct: 94 IVINVIDMNDNR--PEFLHQVWNGSVPEGSKPGT 125
>pdb|1NCJ|A Chain A, N-Cadherin, Two-Domain Fragment
Length = 215
Score = 77.0 bits (188), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 62/211 (29%), Positives = 99/211 (46%), Gaps = 11/211 (5%)
Query: 755 PIELQVNESVPLKSTLTKIIA-RDRDLGYNGKLVFGISSGDNDSVFRIDPDSGELKVVGY 813
PI L N P L +I + RD++L + + +F I+P SG+L V
Sbjct: 6 PINLPENSRGPFPQELVRIRSDRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKP 65
Query: 814 LDRERTSEYTLNITVYDLGKPQKSTSKMLPITILDVNDNPPKFEKSLASFRVTENALNGT 873
LDRE + + L D+ Q + I ++D+NDN P+F + + V E + GT
Sbjct: 66 LDRELIARFHLRAHAVDINGNQVENPIDIVINVIDMNDNRPEFLHQVWNGSVPEGSKPGT 125
Query: 874 VIFKVNATDLDLGD--NAKVVYSLMTDTQD------FAVDSATGSLY-VSASLDRERQDL 924
+ V A D D + N + Y +++ F +++ TG + V+A LDRE+
Sbjct: 126 YVMTVTAIDADDPNALNGMLRYRIVSQAPSTPSPNMFTINNETGDIITVAAGLDREKVQQ 185
Query: 925 YELKIRASDCDGRNDMYTLHADALVRVTIDD 955
Y L I+A+D +G N Y L A +T+ D
Sbjct: 186 YTLIIQATDMEG-NPTYGLSNTATAVITVTD 215
Score = 63.9 bits (154), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 53/169 (31%), Positives = 85/169 (50%), Gaps = 13/169 (7%)
Query: 902 FAVDSATGSLYVSASLDRERQDLYELKIRASDCDGRNDMYTLHADALVRVTIDDINDNAP 961
F ++ +G L V+ LDRE + L+ A D +G + + + + D+NDN P
Sbjct: 51 FIINPISGQLSVTKPLDRELIARFHLRAHAVDINGNQ----VENPIDIVINVIDMNDNRP 106
Query: 962 NFALPNYSVKVREDIPVGTVVAILSASDPD--LGQGGVVRYTIVSD---NEADDVFSIDR 1016
F ++ V E GT V ++A D D G++RY IVS + ++F+I+
Sbjct: 107 EFLHQVWNGSVPEGSKPGTYVMTVTAIDADDPNALNGMLRYRIVSQAPSTPSPNMFTINN 166
Query: 1017 LTG-TIRVAKPLDFEKRQVHSLVVRAKDNGSPPLY---SEATLIVEVSD 1061
TG I VA LD EK Q ++L+++A D P Y + AT ++ V+D
Sbjct: 167 ETGDIITVAAGLDREKVQQYTLIIQATDMEGNPTYGLSNTATAVITVTD 215
Score = 56.2 bits (134), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 58/200 (29%), Positives = 94/200 (47%), Gaps = 20/200 (10%)
Query: 380 DREIYEVDVPETT--PVNTPIIRLKVSDADDGKNAQVFLEIVGGNE----GGEFNINPET 433
D I +++PE + P ++R++ +D KN + + G G F INP +
Sbjct: 1 DWVIPPINLPENSRGPFPQELVRIR---SDRDKNLSLRYSVTGPGADQPPTGIFIINPIS 57
Query: 434 GMLYTAVTLDAEDKAFYTLTVSAIDQGNAGTRKQSAAKVKVNIVDTNDNDPLFDSPEMEV 493
G L LD E A + L A+D G + ++ + +N++D NDN P F
Sbjct: 58 GQLSVTKPLDRELIARFHLRAHAVDIN--GNQVENPIDIVINVIDMNDNRPEFLHQVWNG 115
Query: 494 SINENEPAGTSVIKVTAKDKD--SGENAYISYSIANLKP-VP----FEIDHFSG-VIKTT 545
S+ E GT V+ VTA D D + N + Y I + P P F I++ +G +I
Sbjct: 116 SVPEGSKPGTYVMTVTAIDADDPNALNGMLRYRIVSQAPSTPSPNMFTINNETGDIITVA 175
Query: 546 QVLDYESMRREYILRVRASD 565
LD E + ++Y L ++A+D
Sbjct: 176 AGLDREKV-QQYTLIIQATD 194
Score = 52.8 bits (125), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 44/146 (30%), Positives = 74/146 (50%), Gaps = 11/146 (7%)
Query: 533 FEIDHFSGVIKTTQVLDYESMRREYILRVRASDWGLPYRRQTEMQLKIKLLDVNDNRPQF 592
F I+ SG + T+ LD E + R + LR A D + + + + I ++D+NDNRP+F
Sbjct: 51 FIINPISGQLSVTKPLDRELIAR-FHLRAHAVDING-NQVENPIDIVINVIDMNDNRPEF 108
Query: 593 EKVDCLGHVPRNLPIGREIITLSAIDFDAGN----IISYRIVSGNED----GCFALDITS 644
G VP G ++T++AID D N ++ YRIVS F ++ +
Sbjct: 109 LHQVWNGSVPEGSKPGTYVMTVTAIDADDPNALNGMLRYRIVSQAPSTPSPNMFTINNET 168
Query: 645 G-VLSIACDLTDVRVNEREINVTATD 669
G ++++A L +V + + + ATD
Sbjct: 169 GDIITVAAGLDREKVQQYTLIIQATD 194
Score = 50.8 bits (120), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 48/155 (30%), Positives = 71/155 (45%), Gaps = 9/155 (5%)
Query: 332 VLKLLDREIAPLGYNLTLRAVDKGTPPRETYKATQVHLVDLNDNKPVFDREIYEVDVPET 391
V K LDRE+ ++L AVD E ++++D+NDN+P F +++ VPE
Sbjct: 62 VTKPLDRELI-ARFHLRAHAVDINGNQVENPIDIVINVIDMNDNRPEFLHQVWNGSVPEG 120
Query: 392 TPVNTPIIRLKVSDADD--GKNAQVFLEIVGGNEG----GEFNINPETGMLYT-AVTLDA 444
+ T ++ + DADD N + IV F IN ETG + T A LD
Sbjct: 121 SKPGTYVMTVTAIDADDPNALNGMLRYRIVSQAPSTPSPNMFTINNETGDIITVAAGLDR 180
Query: 445 EDKAFYTLTVSAID-QGNAGTRKQSAAKVKVNIVD 478
E YTL + A D +GN + A + + D
Sbjct: 181 EKVQQYTLIIQATDMEGNPTYGLSNTATAVITVTD 215
Score = 35.0 bits (79), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 50/115 (43%), Gaps = 14/115 (12%)
Query: 81 DRDKFFK---------AEERLVGDFWFLLIRTRTGNTDVLNRERKDKYILHIKATITHRD 131
DRDK A++ G F I + T L+RE ++ H++A +
Sbjct: 27 DRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKPLDRELIARF--HLRAHAVDIN 84
Query: 132 GKKASYEETTCKVHVNVLDTNDLNPLFYPTEYEETVPEDLPLHTSILRVSAEDAD 186
G + E + +NV+D ND P F + +VPE T ++ V+A DAD
Sbjct: 85 GNQV---ENPIDIVINVIDMNDNRPEFLHQVWNGSVPEGSKPGTYVMTVTAIDAD 136
Score = 34.3 bits (77), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 44/94 (46%), Gaps = 5/94 (5%)
Query: 998 VRYTIV---SDNEADDVFSIDRLTGTIRVAKPLDFEKRQVHSLVVRAKDNGSPPLYSEAT 1054
+RY++ +D +F I+ ++G + V KPLD E L A D + +
Sbjct: 34 LRYSVTGPGADQPPTGIFIINPISGQLSVTKPLDRELIARFHLRAHAVDINGNQVENPID 93
Query: 1055 LIVEVSDVNENMNAPVFSDFVYQATVKENQPIGT 1088
+++ V D+N+N P F V+ +V E GT
Sbjct: 94 IVINVIDMNDNR--PEFLHQVWNGSVPEGSKPGT 125
>pdb|3K5S|A Chain A, Crystal Structure Of Chicken T-Cadherin Ec1 Ec2
pdb|3K5S|B Chain B, Crystal Structure Of Chicken T-Cadherin Ec1 Ec2
Length = 217
Score = 72.8 bits (177), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 64/218 (29%), Positives = 96/218 (44%), Gaps = 15/218 (6%)
Query: 751 FFSFPIELQVNESVPLKSTLTKIIARDRDLGYNGKLVFGISSGDNDSVFRIDPDSGELKV 810
+ PI + N+ P ++ K+I + G +L D +FRI+ SG++ V
Sbjct: 2 ILATPILIPENQRPPFPRSVGKVIRSEGTEGAKFRLSGKGVDQDPKGIFRINEISGDVSV 61
Query: 811 VGYLDRERTSEYTLNITVYDLGKPQKSTSKMLPITILDVNDNPPKFEKSLASFRVTENAL 870
LDRE + Y L + V DL L I+++D NDN P F++ V E +
Sbjct: 62 TRPLDREAIANYQLEVEVTDLSGKIIDGPVRLDISVIDQNDNRPMFKEGPYVGHVMEGSP 121
Query: 871 NGTVIFKVNATDLD--LGDNAKVVYSLMTDTQD------FAVDSATGSLYVSAS---LDR 919
GT + ++ A D D DNA + Y+++ T F +D G + S LDR
Sbjct: 122 TGTTVMRMTAFDADDPSTDNALLRYNILKQTPTKPSPNMFYIDPEKGDIVTVVSPVLLDR 181
Query: 920 ERQDL--YELKIRASDCDGRNDMYTLHADALVRVTIDD 955
E + YEL I A D G + L A + IDD
Sbjct: 182 ETMETPKYELVIEAKDMGGHD--VGLTGTATATILIDD 217
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/154 (33%), Positives = 74/154 (48%), Gaps = 13/154 (8%)
Query: 425 GEFNINPETGMLYTAVTLDAEDKAFYTLTVSAIDQGNAGTRKQSAAKVKVNIVDTNDNDP 484
G F IN +G + LD E A Y L V D +G ++ ++++D NDN P
Sbjct: 48 GIFRINEISGDVSVTRPLDREAIANYQLEVEVTDL--SGKIIDGPVRLDISVIDQNDNRP 105
Query: 485 LFDSPEMEVSINENEPAGTSVIKVTAKDKD--SGENAYISYSIAN---LKPVP--FEIDH 537
+F + E P GT+V+++TA D D S +NA + Y+I KP P F ID
Sbjct: 106 MFKEGPYVGHVMEGSPTGTTVMRMTAFDADDPSTDNALLRYNILKQTPTKPSPNMFYIDP 165
Query: 538 FSGVIKTT---QVLDYESMRR-EYILRVRASDWG 567
G I T +LD E+M +Y L + A D G
Sbjct: 166 EKGDIVTVVSPVLLDRETMETPKYELVIEAKDMG 199
Score = 50.1 bits (118), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 72/155 (46%), Gaps = 14/155 (9%)
Query: 902 FAVDSATGSLYVSASLDRERQDLYELKIRASDCDGRNDMYTLHADALVRVTIDDINDNAP 961
F ++ +G + V+ LDRE Y+L++ +D G+ + + +++ D NDN P
Sbjct: 50 FRINEISGDVSVTRPLDREAIANYQLEVEVTDLSGK----IIDGPVRLDISVIDQNDNRP 105
Query: 962 NFALPNYSVKVREDIPVGTVVAILSASDPD--LGQGGVVRYTIVSDN---EADDVFSIDR 1016
F Y V E P GT V ++A D D ++RY I+ + ++F ID
Sbjct: 106 MFKEGPYVGHVMEGSPTGTTVMRMTAFDADDPSTDNALLRYNILKQTPTKPSPNMFYIDP 165
Query: 1017 LTGTI-RVAKPLDFEKRQV----HSLVVRAKDNGS 1046
G I V P+ ++ + + LV+ AKD G
Sbjct: 166 EKGDIVTVVSPVLLDRETMETPKYELVIEAKDMGG 200
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 59/126 (46%), Gaps = 3/126 (2%)
Query: 496 NENEPAGTSVIKVTAKDKDSGENAYISYSIANLKPVP-FEIDHFSGVIKTTQVLDYESMR 554
N+ P SV KV + G +S + P F I+ SG + T+ LD E++
Sbjct: 12 NQRPPFPRSVGKVIRSEGTEGAKFRLSGKGVDQDPKGIFRINEISGDVSVTRPLDREAIA 71
Query: 555 REYILRVRASDWGLPYRRQTEMQLKIKLLDVNDNRPQFEKVDCLGHVPRNLPIGREIITL 614
Y L V +D ++L I ++D NDNRP F++ +GHV P G ++ +
Sbjct: 72 N-YQLEVEVTDLSGKII-DGPVRLDISVIDQNDNRPMFKEGPYVGHVMEGSPTGTTVMRM 129
Query: 615 SAIDFD 620
+A D D
Sbjct: 130 TAFDAD 135
Score = 47.4 bits (111), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 49/169 (28%), Positives = 70/169 (41%), Gaps = 21/169 (12%)
Query: 304 VDGDPDGHFRIVPTKIDPGTKKKEYNIVVLKLLDREIAPLGYNLTLRAVDKGTPPRETYK 363
VD DP G FRI + ++ V + LDRE A Y L + D +
Sbjct: 42 VDQDPKGIFRI---------NEISGDVSVTRPLDRE-AIANYQLEVEVTDLSGKIIDGPV 91
Query: 364 ATQVHLVDLNDNKPVFDREIYEVDVPETTPVNTPIIRLKVSDADDGKNAQVFL------E 417
+ ++D NDN+P+F Y V E +P T ++R+ DADD L +
Sbjct: 92 RLDISVIDQNDNRPMFKEGPYVGHVMEGSPTGTTVMRMTAFDADDPSTDNALLRYNILKQ 151
Query: 418 IVGGNEGGEFNINPETGMLYTAVT---LDAE--DKAFYTLTVSAIDQGN 461
F I+PE G + T V+ LD E + Y L + A D G
Sbjct: 152 TPTKPSPNMFYIDPEKGDIVTVVSPVLLDRETMETPKYELVIEAKDMGG 200
Score = 39.3 bits (90), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 44/86 (51%), Gaps = 2/86 (2%)
Query: 1005 DNEADDVFSIDRLTGTIRVAKPLDFEKRQVHSLVVRAKDNGSPPLYSEATLIVEVSDVNE 1064
D + +F I+ ++G + V +PLD E + L V D + + + +++S +++
Sbjct: 43 DQDPKGIFRINEISGDVSVTRPLDREAIANYQLEVEVTDLSGKII--DGPVRLDISVIDQ 100
Query: 1065 NMNAPVFSDFVYQATVKENQPIGTSL 1090
N N P+F + Y V E P GT++
Sbjct: 101 NDNRPMFKEGPYVGHVMEGSPTGTTV 126
Score = 35.8 bits (81), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 65/142 (45%), Gaps = 20/142 (14%)
Query: 111 LNRERKDKYILHIKATITHRDGKKASYEETTCKVHVNVLDTNDLNPLFYPTEYEETVPED 170
L+RE Y L ++ +T GK + ++ ++V+D ND P+F Y V E
Sbjct: 65 LDREAIANYQLEVE--VTDLSGKII---DGPVRLDISVIDQNDNRPMFKEGPYVGHVMEG 119
Query: 171 LPLHTSILRVSAEDAD--LGRNGEIYYSF------RDMNEQFSIHPTSG-VVTLTRPLKY 221
P T+++R++A DAD N + Y+ + F I P G +VT+ P+
Sbjct: 120 SPTGTTVMRMTAFDADDPSTDNALLRYNILKQTPTKPSPNMFYIDPEKGDIVTVVSPV-L 178
Query: 222 TDRSV-----HDLVVLGQDRGS 238
DR ++LV+ +D G
Sbjct: 179 LDRETMETPKYELVIEAKDMGG 200
>pdb|3Q2N|A Chain A, Mouse E-Cadherin Ec1-2 L175d Mutant
pdb|3Q2N|B Chain B, Mouse E-Cadherin Ec1-2 L175d Mutant
Length = 213
Score = 69.3 bits (168), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 67/217 (30%), Positives = 105/217 (48%), Gaps = 25/217 (11%)
Query: 755 PIELQVNESVPLKSTLTKIIA-RDRDLGYNGKLVFGISSGDND----SVFRIDPDSGELK 809
PI NE L +I + RD++ K+ + I+ D VF I+ ++G LK
Sbjct: 6 PISCPENEKGEFPKNLVQIKSNRDKET----KVFYSITGQGADKPPVGVFIIERETGWLK 61
Query: 810 VVGYLDRERTSEYTL-NITVYDLGKPQKSTSKMLPITILDVNDNPPKFEKSLASFRVTEN 868
V LDRE ++Y L + V G+ + +++ IT+ D NDN P+F + + V E
Sbjct: 62 VTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIV-ITVTDQNDNRPEFTQEVFEGSVAEG 120
Query: 869 ALNGTVIFKVNATDLD---LGDNAKVVYSLMTDTQD------FAVDSATGSLYVSAS-LD 918
A+ GT + KV+ATD D NA + Y++++ + F V+ TG + V S LD
Sbjct: 121 AVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVDTSGLD 180
Query: 919 RERQDLYELKIRASDCDGRNDMYTLHADALVRVTIDD 955
RE Y L ++A+D G L A +T+ D
Sbjct: 181 RESYPTYTLVVQAADLQGEG----LSTTAKAVITVKD 213
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 59/169 (34%), Positives = 78/169 (46%), Gaps = 16/169 (9%)
Query: 410 KNAQVFLEIVGGNEG----GEFNINPETGMLYTAVTLDAEDKAFYTLTVSAIDQGNAGTR 465
K +VF I G G F I ETG L LD E A Y L A+ G
Sbjct: 30 KETKVFYSITGQGADKPPVGVFIIERETGWLKVTQPLDREAIAKYILYSHAVSSN--GEA 87
Query: 466 KQSAAKVKVNIVDTNDNDPLFDSPEMEVSINENEPAGTSVIKVTAKDKDSGENAY---IS 522
+ ++ + + D NDN P F E S+ E GTSV+KV+A D D N Y I+
Sbjct: 88 VEDPMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIA 147
Query: 523 YSIANLKP-VP----FEIDHFSGVIKT-TQVLDYESMRREYILRVRASD 565
Y+I + P +P F ++ +GVI T LD ES Y L V+A+D
Sbjct: 148 YTIVSQDPELPHKNMFTVNRDTGVISVDTSGLDRESYPT-YTLVVQAAD 195
Score = 58.2 bits (139), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 57/185 (30%), Positives = 82/185 (44%), Gaps = 17/185 (9%)
Query: 890 KVVYSLMTDTQD------FAVDSATGSLYVSASLDRERQDLYELKIRASDCDGRNDMYTL 943
KV YS+ D F ++ TG L V+ LDRE Y L A +G +
Sbjct: 33 KVFYSITGQGADKPPVGVFIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGE----AV 88
Query: 944 HADALVRVTIDDINDNAPNFALPNYSVKVREDIPVGTVVAILSASDPD---LGQGGVVRY 1000
+ +T+ D NDN P F + V E GT V +SA+D D + Y
Sbjct: 89 EDPMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAY 148
Query: 1001 TIVSDNEA---DDVFSIDRLTGTIRV-AKPLDFEKRQVHSLVVRAKDNGSPPLYSEATLI 1056
TIVS + ++F+++R TG I V LD E ++LVV+A D L + A +
Sbjct: 149 TIVSQDPELPHKNMFTVNRDTGVISVDTSGLDRESYPTYTLVVQAADLQGEGLSTTAKAV 208
Query: 1057 VEVSD 1061
+ V D
Sbjct: 209 ITVKD 213
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/151 (30%), Positives = 67/151 (44%), Gaps = 9/151 (5%)
Query: 332 VLKLLDREIAPLGYNLTLRAVDKGTPPRETYKATQVHLVDLNDNKPVFDREIYEVDVPET 391
V + LDRE A Y L AV E + + D NDN+P F +E++E V E
Sbjct: 62 VTQPLDRE-AIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAEG 120
Query: 392 TPVNTPIIRLKVSDADD---GKNAQVFLEIVGGN----EGGEFNINPETGMLYTAVT-LD 443
T ++++ +DADD NA + IV + F +N +TG++ + LD
Sbjct: 121 AVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVDTSGLD 180
Query: 444 AEDKAFYTLTVSAIDQGNAGTRKQSAAKVKV 474
E YTL V A D G + A + V
Sbjct: 181 RESYPTYTLVVQAADLQGEGLSTTAKAVITV 211
Score = 44.3 bits (103), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 53/172 (30%), Positives = 83/172 (48%), Gaps = 19/172 (11%)
Query: 493 VSINENE----PAGTSVIKVTAKDKDSGENAYISYSIANLKPVP-FEIDHFSGVIKTTQV 547
+S ENE P IK + +DK++ I+ A+ PV F I+ +G +K TQ
Sbjct: 7 ISCPENEKGEFPKNLVQIK-SNRDKETKVFYSITGQGADKPPVGVFIIERETGWLKVTQP 65
Query: 548 LDYESMRREYILRVRA-SDWGLPYRRQTEMQLKIKLLDVNDNRPQFEKVDCLGHVPRNLP 606
LD E++ + YIL A S G + M++ I + D NDNRP+F + G V
Sbjct: 66 LDREAIAK-YILYSHAVSSNGEAV--EDPMEIVITVTDQNDNRPEFTQEVFEGSVAEGAV 122
Query: 607 IGREIITLSAIDFD-----AGNIISYRIVSGNED----GCFALDITSGVLSI 649
G ++ +SA D D I+Y IVS + + F ++ +GV+S+
Sbjct: 123 PGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISV 174
Score = 43.9 bits (102), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 48/171 (28%), Positives = 75/171 (43%), Gaps = 22/171 (12%)
Query: 99 LLIRTRTGN---TDVLNRERKDKYILHIKATITHRDGKKASYEETTCKVHVNVLDTNDLN 155
+I TG T L+RE KYIL+ +H E ++ + V D ND
Sbjct: 51 FIIERETGWLKVTQPLDREAIAKYILY-----SHAVSSNGEAVEDPMEIVITVTDQNDNR 105
Query: 156 PLFYPTEYEETVPEDLPLHTSILRVSAEDAD---LGRNGEIYYSFRDMNEQ------FSI 206
P F +E +V E TS+++VSA DAD N I Y+ + + F++
Sbjct: 106 PEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTV 165
Query: 207 HPTSGVVTL-TRPLKYTDRSVHDLVVLGQDRGSVFKGGGKPSSAKLKIKVE 256
+ +GV+++ T L + LVV D +G G ++AK I V+
Sbjct: 166 NRDTGVISVDTSGLDRESYPTYTLVVQAAD----LQGEGLSTTAKAVITVK 212
Score = 39.3 bits (90), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 42/80 (52%), Gaps = 2/80 (2%)
Query: 1011 VFSIDRLTGTIRVAKPLDFEKRQVHSLVVRAKDNGSPPLYSEATLIVEVSDVNENMNAPV 1070
VF I+R TG ++V +PLD E + L A + + +++ V+D N+N P
Sbjct: 50 VFIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNR--PE 107
Query: 1071 FSDFVYQATVKENQPIGTSL 1090
F+ V++ +V E GTS+
Sbjct: 108 FTQEVFEGSVAEGAVPGTSV 127
>pdb|3LNI|A Chain A, Crystal Structure Of E-Cadherin Ec12 E89a
pdb|3LNI|B Chain B, Crystal Structure Of E-Cadherin Ec12 E89a
Length = 213
Score = 69.3 bits (168), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 64/216 (29%), Positives = 100/216 (46%), Gaps = 23/216 (10%)
Query: 755 PIELQVNESVPLKSTLTKIIA-RDRDLGYNGKLVFGISSGDND----SVFRIDPDSGELK 809
PI NE L +I + RD++ K+ + I+ D VF I+ ++G LK
Sbjct: 6 PISCPENEKGEFPKNLVQIKSNRDKET----KVFYSITGQGADKPPVGVFIIERETGWLK 61
Query: 810 VVGYLDRERTSEYTLNITVYDLGKPQKSTSKMLPITILDVNDNPPKFEKSLASFRVTENA 869
V LDRE ++Y L + + IT+ D NDN P+F + + V E A
Sbjct: 62 VTQPLDREAIAKYILYSHAVSSNGEAVADPMEIVITVTDQNDNRPEFTQEVFEGSVAEGA 121
Query: 870 LNGTVIFKVNATDLD---LGDNAKVVYSLMTDTQD------FAVDSATGSLYV-SASLDR 919
+ GT + KV+ATD D NA + Y++++ + F V+ TG + V ++ LDR
Sbjct: 122 VPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVLTSGLDR 181
Query: 920 ERQDLYELKIRASDCDGRNDMYTLHADALVRVTIDD 955
E Y L ++A+D G L A +T+ D
Sbjct: 182 ESYPTYTLVVQAADLQGEG----LSTTAKAVITVKD 213
Score = 60.8 bits (146), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 59/169 (34%), Positives = 77/169 (45%), Gaps = 16/169 (9%)
Query: 410 KNAQVFLEIVGGNEG----GEFNINPETGMLYTAVTLDAEDKAFYTLTVSAIDQGNAGTR 465
K +VF I G G F I ETG L LD E A Y L A+ G
Sbjct: 30 KETKVFYSITGQGADKPPVGVFIIERETGWLKVTQPLDREAIAKYILYSHAVSSN--GEA 87
Query: 466 KQSAAKVKVNIVDTNDNDPLFDSPEMEVSINENEPAGTSVIKVTAKDKDSGENAY---IS 522
++ + + D NDN P F E S+ E GTSV+KV+A D D N Y I+
Sbjct: 88 VADPMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIA 147
Query: 523 YSIANLKP-VP----FEIDHFSGVIKT-TQVLDYESMRREYILRVRASD 565
Y+I + P +P F ++ +GVI T LD ES Y L V+A+D
Sbjct: 148 YTIVSQDPELPHKNMFTVNRDTGVISVLTSGLDRESYPT-YTLVVQAAD 195
Score = 58.9 bits (141), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 59/186 (31%), Positives = 84/186 (45%), Gaps = 19/186 (10%)
Query: 890 KVVYSLMTDTQD------FAVDSATGSLYVSASLDRERQDLYELKIRASDCDGRNDMYTL 943
KV YS+ D F ++ TG L V+ LDRE Y L A +G
Sbjct: 33 KVFYSITGQGADKPPVGVFIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGE-----A 87
Query: 944 HADAL-VRVTIDDINDNAPNFALPNYSVKVREDIPVGTVVAILSASDPD---LGQGGVVR 999
AD + + +T+ D NDN P F + V E GT V +SA+D D +
Sbjct: 88 VADPMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIA 147
Query: 1000 YTIVSDNEA---DDVFSIDRLTGTIRV-AKPLDFEKRQVHSLVVRAKDNGSPPLYSEATL 1055
YTIVS + ++F+++R TG I V LD E ++LVV+A D L + A
Sbjct: 148 YTIVSQDPELPHKNMFTVNRDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGLSTTAKA 207
Query: 1056 IVEVSD 1061
++ V D
Sbjct: 208 VITVKD 213
Score = 47.0 bits (110), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 66/151 (43%), Gaps = 9/151 (5%)
Query: 332 VLKLLDREIAPLGYNLTLRAVDKGTPPRETYKATQVHLVDLNDNKPVFDREIYEVDVPET 391
V + LDRE A Y L AV + + D NDN+P F +E++E V E
Sbjct: 62 VTQPLDRE-AIAKYILYSHAVSSNGEAVADPMEIVITVTDQNDNRPEFTQEVFEGSVAEG 120
Query: 392 TPVNTPIIRLKVSDADD---GKNAQVFLEIVGGN----EGGEFNINPETGMLYTAVT-LD 443
T ++++ +DADD NA + IV + F +N +TG++ + LD
Sbjct: 121 AVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVLTSGLD 180
Query: 444 AEDKAFYTLTVSAIDQGNAGTRKQSAAKVKV 474
E YTL V A D G + A + V
Sbjct: 181 RESYPTYTLVVQAADLQGEGLSTTAKAVITV 211
Score = 43.9 bits (102), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 49/171 (28%), Positives = 76/171 (44%), Gaps = 22/171 (12%)
Query: 99 LLIRTRTGN---TDVLNRERKDKYILHIKATITHRDGKKASYEETTCKVHVNVLDTNDLN 155
+I TG T L+RE KYIL+ A ++ + E + + V D ND
Sbjct: 51 FIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGEAVADPME-----IVITVTDQNDNR 105
Query: 156 PLFYPTEYEETVPEDLPLHTSILRVSAEDAD---LGRNGEIYYSFRDMNEQ------FSI 206
P F +E +V E TS+++VSA DAD N I Y+ + + F++
Sbjct: 106 PEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTV 165
Query: 207 HPTSGVVT-LTRPLKYTDRSVHDLVVLGQDRGSVFKGGGKPSSAKLKIKVE 256
+ +GV++ LT L + LVV D +G G ++AK I V+
Sbjct: 166 NRDTGVISVLTSGLDRESYPTYTLVVQAAD----LQGEGLSTTAKAVITVK 212
Score = 43.1 bits (100), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 53/172 (30%), Positives = 82/172 (47%), Gaps = 19/172 (11%)
Query: 493 VSINENE----PAGTSVIKVTAKDKDSGENAYISYSIANLKPVP-FEIDHFSGVIKTTQV 547
+S ENE P IK + +DK++ I+ A+ PV F I+ +G +K TQ
Sbjct: 7 ISCPENEKGEFPKNLVQIK-SNRDKETKVFYSITGQGADKPPVGVFIIERETGWLKVTQP 65
Query: 548 LDYESMRREYILRVRA-SDWGLPYRRQTEMQLKIKLLDVNDNRPQFEKVDCLGHVPRNLP 606
LD E++ + YIL A S G M++ I + D NDNRP+F + G V
Sbjct: 66 LDREAIAK-YILYSHAVSSNGEAVADP--MEIVITVTDQNDNRPEFTQEVFEGSVAEGAV 122
Query: 607 IGREIITLSAIDFD-----AGNIISYRIVSGNED----GCFALDITSGVLSI 649
G ++ +SA D D I+Y IVS + + F ++ +GV+S+
Sbjct: 123 PGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISV 174
Score = 39.7 bits (91), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 42/80 (52%), Gaps = 2/80 (2%)
Query: 1011 VFSIDRLTGTIRVAKPLDFEKRQVHSLVVRAKDNGSPPLYSEATLIVEVSDVNENMNAPV 1070
VF I+R TG ++V +PLD E + L A + + +++ V+D N+N P
Sbjct: 50 VFIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGEAVADPMEIVITVTDQNDNR--PE 107
Query: 1071 FSDFVYQATVKENQPIGTSL 1090
F+ V++ +V E GTS+
Sbjct: 108 FTQEVFEGSVAEGAVPGTSV 127
>pdb|1Q1P|A Chain A, E-Cadherin Activation
Length = 212
Score = 68.9 bits (167), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 66/217 (30%), Positives = 106/217 (48%), Gaps = 25/217 (11%)
Query: 755 PIELQVNESVPLKSTLTKIIA-RDRDLGYNGKLVFGISSGDND----SVFRIDPDSGELK 809
PI NE L +I + RD++ K+ + I+ D VF I+ ++G LK
Sbjct: 5 PISCPENEKGEFPKNLVQIKSNRDKET----KVFYSITGQGADKPPVGVFIIERETGWLK 60
Query: 810 VVGYLDRERTSEYTL-NITVYDLGKPQKSTSKMLPITILDVNDNPPKFEKSLASFRVTEN 868
V LDRE ++Y L + V G+ + +++ IT+ D NDN P+F + + V E
Sbjct: 61 VTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIV-ITVTDQNDNRPEFTQEVFEGSVAEG 119
Query: 869 ALNGTVIFKVNATDLD---LGDNAKVVYSLMTDTQD------FAVDSATGSLYV-SASLD 918
A+ GT + KV+ATD D NA + Y++++ + F V+ TG + V ++ LD
Sbjct: 120 AVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVLTSGLD 179
Query: 919 RERQDLYELKIRASDCDGRNDMYTLHADALVRVTIDD 955
RE Y L ++A+D G L A +T+ D
Sbjct: 180 RESYPTYTLVVQAADLQGEG----LSTTAKAVITVKD 212
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 59/169 (34%), Positives = 78/169 (46%), Gaps = 16/169 (9%)
Query: 410 KNAQVFLEIVGGNEG----GEFNINPETGMLYTAVTLDAEDKAFYTLTVSAIDQGNAGTR 465
K +VF I G G F I ETG L LD E A Y L A+ G
Sbjct: 29 KETKVFYSITGQGADKPPVGVFIIERETGWLKVTQPLDREAIAKYILYSHAVSSN--GEA 86
Query: 466 KQSAAKVKVNIVDTNDNDPLFDSPEMEVSINENEPAGTSVIKVTAKDKDSGENAY---IS 522
+ ++ + + D NDN P F E S+ E GTSV+KV+A D D N Y I+
Sbjct: 87 VEDPMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIA 146
Query: 523 YSIANLKP-VP----FEIDHFSGVIKT-TQVLDYESMRREYILRVRASD 565
Y+I + P +P F ++ +GVI T LD ES Y L V+A+D
Sbjct: 147 YTIVSQDPELPHKNMFTVNRDTGVISVLTSGLDRESYPT-YTLVVQAAD 194
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 57/185 (30%), Positives = 82/185 (44%), Gaps = 17/185 (9%)
Query: 890 KVVYSLMTDTQD------FAVDSATGSLYVSASLDRERQDLYELKIRASDCDGRNDMYTL 943
KV YS+ D F ++ TG L V+ LDRE Y L A +G +
Sbjct: 32 KVFYSITGQGADKPPVGVFIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGE----AV 87
Query: 944 HADALVRVTIDDINDNAPNFALPNYSVKVREDIPVGTVVAILSASDPD---LGQGGVVRY 1000
+ +T+ D NDN P F + V E GT V +SA+D D + Y
Sbjct: 88 EDPMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAY 147
Query: 1001 TIVSDNEA---DDVFSIDRLTGTIRV-AKPLDFEKRQVHSLVVRAKDNGSPPLYSEATLI 1056
TIVS + ++F+++R TG I V LD E ++LVV+A D L + A +
Sbjct: 148 TIVSQDPELPHKNMFTVNRDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGLSTTAKAV 207
Query: 1057 VEVSD 1061
+ V D
Sbjct: 208 ITVKD 212
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 46/151 (30%), Positives = 67/151 (44%), Gaps = 9/151 (5%)
Query: 332 VLKLLDREIAPLGYNLTLRAVDKGTPPRETYKATQVHLVDLNDNKPVFDREIYEVDVPET 391
V + LDRE A Y L AV E + + D NDN+P F +E++E V E
Sbjct: 61 VTQPLDRE-AIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAEG 119
Query: 392 TPVNTPIIRLKVSDADD---GKNAQVFLEIVGGN----EGGEFNINPETGMLYTAVT-LD 443
T ++++ +DADD NA + IV + F +N +TG++ + LD
Sbjct: 120 AVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVLTSGLD 179
Query: 444 AEDKAFYTLTVSAIDQGNAGTRKQSAAKVKV 474
E YTL V A D G + A + V
Sbjct: 180 RESYPTYTLVVQAADLQGEGLSTTAKAVITV 210
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/171 (28%), Positives = 75/171 (43%), Gaps = 22/171 (12%)
Query: 99 LLIRTRTGN---TDVLNRERKDKYILHIKATITHRDGKKASYEETTCKVHVNVLDTNDLN 155
+I TG T L+RE KYIL+ +H E ++ + V D ND
Sbjct: 50 FIIERETGWLKVTQPLDREAIAKYILY-----SHAVSSNGEAVEDPMEIVITVTDQNDNR 104
Query: 156 PLFYPTEYEETVPEDLPLHTSILRVSAEDAD---LGRNGEIYYSFRDMNEQ------FSI 206
P F +E +V E TS+++VSA DAD N I Y+ + + F++
Sbjct: 105 PEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTV 164
Query: 207 HPTSGVVT-LTRPLKYTDRSVHDLVVLGQDRGSVFKGGGKPSSAKLKIKVE 256
+ +GV++ LT L + LVV D +G G ++AK I V+
Sbjct: 165 NRDTGVISVLTSGLDRESYPTYTLVVQAAD----LQGEGLSTTAKAVITVK 211
Score = 44.3 bits (103), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 53/172 (30%), Positives = 83/172 (48%), Gaps = 19/172 (11%)
Query: 493 VSINENE----PAGTSVIKVTAKDKDSGENAYISYSIANLKPVP-FEIDHFSGVIKTTQV 547
+S ENE P IK + +DK++ I+ A+ PV F I+ +G +K TQ
Sbjct: 6 ISCPENEKGEFPKNLVQIK-SNRDKETKVFYSITGQGADKPPVGVFIIERETGWLKVTQP 64
Query: 548 LDYESMRREYILRVRA-SDWGLPYRRQTEMQLKIKLLDVNDNRPQFEKVDCLGHVPRNLP 606
LD E++ + YIL A S G + M++ I + D NDNRP+F + G V
Sbjct: 65 LDREAIAK-YILYSHAVSSNG--EAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAEGAV 121
Query: 607 IGREIITLSAIDFD-----AGNIISYRIVSGNED----GCFALDITSGVLSI 649
G ++ +SA D D I+Y IVS + + F ++ +GV+S+
Sbjct: 122 PGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISV 173
Score = 39.3 bits (90), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 42/80 (52%), Gaps = 2/80 (2%)
Query: 1011 VFSIDRLTGTIRVAKPLDFEKRQVHSLVVRAKDNGSPPLYSEATLIVEVSDVNENMNAPV 1070
VF I+R TG ++V +PLD E + L A + + +++ V+D N+N P
Sbjct: 49 VFIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNR--PE 106
Query: 1071 FSDFVYQATVKENQPIGTSL 1090
F+ V++ +V E GTS+
Sbjct: 107 FTQEVFEGSVAEGAVPGTSV 126
>pdb|2QVF|B Chain B, Mouse E-cadherin Domains 1,2
Length = 213
Score = 68.9 bits (167), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 66/217 (30%), Positives = 106/217 (48%), Gaps = 25/217 (11%)
Query: 755 PIELQVNESVPLKSTLTKIIA-RDRDLGYNGKLVFGISSGDND----SVFRIDPDSGELK 809
PI NE L +I + RD++ K+ + I+ D VF I+ ++G LK
Sbjct: 6 PISCPENEKGEFPKNLVQIKSNRDKET----KVFYSITGQGADKPPVGVFIIERETGWLK 61
Query: 810 VVGYLDRERTSEYTL-NITVYDLGKPQKSTSKMLPITILDVNDNPPKFEKSLASFRVTEN 868
V LDRE ++Y L + V G+ + +++ IT+ D NDN P+F + + V E
Sbjct: 62 VTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIV-ITVTDQNDNRPEFTQEVFEGSVAEG 120
Query: 869 ALNGTVIFKVNATDLD---LGDNAKVVYSLMTDTQD------FAVDSATGSLYV-SASLD 918
A+ GT + KV+ATD D NA + Y++++ + F V+ TG + V ++ LD
Sbjct: 121 AVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVLTSGLD 180
Query: 919 RERQDLYELKIRASDCDGRNDMYTLHADALVRVTIDD 955
RE Y L ++A+D G L A +T+ D
Sbjct: 181 RESYPTYTLVVQAADLQGEG----LSTTAKAVITVKD 213
Score = 62.0 bits (149), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 59/169 (34%), Positives = 78/169 (46%), Gaps = 16/169 (9%)
Query: 410 KNAQVFLEIVGGNEG----GEFNINPETGMLYTAVTLDAEDKAFYTLTVSAIDQGNAGTR 465
K +VF I G G F I ETG L LD E A Y L A+ G
Sbjct: 30 KETKVFYSITGQGADKPPVGVFIIERETGWLKVTQPLDREAIAKYILYSHAVSSN--GEA 87
Query: 466 KQSAAKVKVNIVDTNDNDPLFDSPEMEVSINENEPAGTSVIKVTAKDKDSGENAY---IS 522
+ ++ + + D NDN P F E S+ E GTSV+KV+A D D N Y I+
Sbjct: 88 VEDPMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIA 147
Query: 523 YSIANLKP-VP----FEIDHFSGVIKT-TQVLDYESMRREYILRVRASD 565
Y+I + P +P F ++ +GVI T LD ES Y L V+A+D
Sbjct: 148 YTIVSQDPELPHKNMFTVNRDTGVISVLTSGLDRESYPT-YTLVVQAAD 195
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 57/185 (30%), Positives = 82/185 (44%), Gaps = 17/185 (9%)
Query: 890 KVVYSLMTDTQD------FAVDSATGSLYVSASLDRERQDLYELKIRASDCDGRNDMYTL 943
KV YS+ D F ++ TG L V+ LDRE Y L A +G +
Sbjct: 33 KVFYSITGQGADKPPVGVFIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGE----AV 88
Query: 944 HADALVRVTIDDINDNAPNFALPNYSVKVREDIPVGTVVAILSASDPD---LGQGGVVRY 1000
+ +T+ D NDN P F + V E GT V +SA+D D + Y
Sbjct: 89 EDPMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAY 148
Query: 1001 TIVSDNEA---DDVFSIDRLTGTIRV-AKPLDFEKRQVHSLVVRAKDNGSPPLYSEATLI 1056
TIVS + ++F+++R TG I V LD E ++LVV+A D L + A +
Sbjct: 149 TIVSQDPELPHKNMFTVNRDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGLSTTAKAV 208
Query: 1057 VEVSD 1061
+ V D
Sbjct: 209 ITVKD 213
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 46/151 (30%), Positives = 67/151 (44%), Gaps = 9/151 (5%)
Query: 332 VLKLLDREIAPLGYNLTLRAVDKGTPPRETYKATQVHLVDLNDNKPVFDREIYEVDVPET 391
V + LDRE A Y L AV E + + D NDN+P F +E++E V E
Sbjct: 62 VTQPLDRE-AIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAEG 120
Query: 392 TPVNTPIIRLKVSDADD---GKNAQVFLEIVGGN----EGGEFNINPETGMLYTAVT-LD 443
T ++++ +DADD NA + IV + F +N +TG++ + LD
Sbjct: 121 AVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVLTSGLD 180
Query: 444 AEDKAFYTLTVSAIDQGNAGTRKQSAAKVKV 474
E YTL V A D G + A + V
Sbjct: 181 RESYPTYTLVVQAADLQGEGLSTTAKAVITV 211
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/171 (28%), Positives = 75/171 (43%), Gaps = 22/171 (12%)
Query: 99 LLIRTRTGN---TDVLNRERKDKYILHIKATITHRDGKKASYEETTCKVHVNVLDTNDLN 155
+I TG T L+RE KYIL+ +H E ++ + V D ND
Sbjct: 51 FIIERETGWLKVTQPLDREAIAKYILY-----SHAVSSNGEAVEDPMEIVITVTDQNDNR 105
Query: 156 PLFYPTEYEETVPEDLPLHTSILRVSAEDAD---LGRNGEIYYSFRDMNEQ------FSI 206
P F +E +V E TS+++VSA DAD N I Y+ + + F++
Sbjct: 106 PEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTV 165
Query: 207 HPTSGVVT-LTRPLKYTDRSVHDLVVLGQDRGSVFKGGGKPSSAKLKIKVE 256
+ +GV++ LT L + LVV D +G G ++AK I V+
Sbjct: 166 NRDTGVISVLTSGLDRESYPTYTLVVQAAD----LQGEGLSTTAKAVITVK 212
Score = 44.3 bits (103), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 53/172 (30%), Positives = 83/172 (48%), Gaps = 19/172 (11%)
Query: 493 VSINENE----PAGTSVIKVTAKDKDSGENAYISYSIANLKPVP-FEIDHFSGVIKTTQV 547
+S ENE P IK + +DK++ I+ A+ PV F I+ +G +K TQ
Sbjct: 7 ISCPENEKGEFPKNLVQIK-SNRDKETKVFYSITGQGADKPPVGVFIIERETGWLKVTQP 65
Query: 548 LDYESMRREYILRVRA-SDWGLPYRRQTEMQLKIKLLDVNDNRPQFEKVDCLGHVPRNLP 606
LD E++ + YIL A S G + M++ I + D NDNRP+F + G V
Sbjct: 66 LDREAIAK-YILYSHAVSSNG--EAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAEGAV 122
Query: 607 IGREIITLSAIDFD-----AGNIISYRIVSGNED----GCFALDITSGVLSI 649
G ++ +SA D D I+Y IVS + + F ++ +GV+S+
Sbjct: 123 PGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISV 174
Score = 39.3 bits (90), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 42/80 (52%), Gaps = 2/80 (2%)
Query: 1011 VFSIDRLTGTIRVAKPLDFEKRQVHSLVVRAKDNGSPPLYSEATLIVEVSDVNENMNAPV 1070
VF I+R TG ++V +PLD E + L A + + +++ V+D N+N P
Sbjct: 50 VFIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNR--PE 107
Query: 1071 FSDFVYQATVKENQPIGTSL 1090
F+ V++ +V E GTS+
Sbjct: 108 FTQEVFEGSVAEGAVPGTSV 127
>pdb|3LNE|A Chain A, Crystal Structure Of E-Cadherin Ec12 K14e
Length = 213
Score = 68.9 bits (167), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 66/217 (30%), Positives = 106/217 (48%), Gaps = 25/217 (11%)
Query: 755 PIELQVNESVPLKSTLTKIIA-RDRDLGYNGKLVFGISSGDND----SVFRIDPDSGELK 809
PI NE L +I + RD++ K+ + I+ D VF I+ ++G LK
Sbjct: 6 PISCPENEEGEFPKNLVQIKSNRDKET----KVFYSITGQGADKPPVGVFIIERETGWLK 61
Query: 810 VVGYLDRERTSEYTL-NITVYDLGKPQKSTSKMLPITILDVNDNPPKFEKSLASFRVTEN 868
V LDRE ++Y L + V G+ + +++ IT+ D NDN P+F + + V E
Sbjct: 62 VTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIV-ITVTDQNDNRPEFTQEVFEGSVAEG 120
Query: 869 ALNGTVIFKVNATDLD---LGDNAKVVYSLMTDTQD------FAVDSATGSLYV-SASLD 918
A+ GT + KV+ATD D NA + Y++++ + F V+ TG + V ++ LD
Sbjct: 121 AVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVLTSGLD 180
Query: 919 RERQDLYELKIRASDCDGRNDMYTLHADALVRVTIDD 955
RE Y L ++A+D G L A +T+ D
Sbjct: 181 RESYPTYTLVVQAADLQGEG----LSTTAKAVITVKD 213
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 59/169 (34%), Positives = 78/169 (46%), Gaps = 16/169 (9%)
Query: 410 KNAQVFLEIVGGNEG----GEFNINPETGMLYTAVTLDAEDKAFYTLTVSAIDQGNAGTR 465
K +VF I G G F I ETG L LD E A Y L A+ G
Sbjct: 30 KETKVFYSITGQGADKPPVGVFIIERETGWLKVTQPLDREAIAKYILYSHAVSSN--GEA 87
Query: 466 KQSAAKVKVNIVDTNDNDPLFDSPEMEVSINENEPAGTSVIKVTAKDKDSGENAY---IS 522
+ ++ + + D NDN P F E S+ E GTSV+KV+A D D N Y I+
Sbjct: 88 VEDPMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIA 147
Query: 523 YSIANLKP-VP----FEIDHFSGVIKT-TQVLDYESMRREYILRVRASD 565
Y+I + P +P F ++ +GVI T LD ES Y L V+A+D
Sbjct: 148 YTIVSQDPELPHKNMFTVNRDTGVISVLTSGLDRESYPT-YTLVVQAAD 195
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 57/185 (30%), Positives = 82/185 (44%), Gaps = 17/185 (9%)
Query: 890 KVVYSLMTDTQD------FAVDSATGSLYVSASLDRERQDLYELKIRASDCDGRNDMYTL 943
KV YS+ D F ++ TG L V+ LDRE Y L A +G +
Sbjct: 33 KVFYSITGQGADKPPVGVFIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGE----AV 88
Query: 944 HADALVRVTIDDINDNAPNFALPNYSVKVREDIPVGTVVAILSASDPD---LGQGGVVRY 1000
+ +T+ D NDN P F + V E GT V +SA+D D + Y
Sbjct: 89 EDPMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAY 148
Query: 1001 TIVSDNEA---DDVFSIDRLTGTIRV-AKPLDFEKRQVHSLVVRAKDNGSPPLYSEATLI 1056
TIVS + ++F+++R TG I V LD E ++LVV+A D L + A +
Sbjct: 149 TIVSQDPELPHKNMFTVNRDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGLSTTAKAV 208
Query: 1057 VEVSD 1061
+ V D
Sbjct: 209 ITVKD 213
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 46/151 (30%), Positives = 67/151 (44%), Gaps = 9/151 (5%)
Query: 332 VLKLLDREIAPLGYNLTLRAVDKGTPPRETYKATQVHLVDLNDNKPVFDREIYEVDVPET 391
V + LDRE A Y L AV E + + D NDN+P F +E++E V E
Sbjct: 62 VTQPLDRE-AIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAEG 120
Query: 392 TPVNTPIIRLKVSDADD---GKNAQVFLEIVGGN----EGGEFNINPETGMLYTAVT-LD 443
T ++++ +DADD NA + IV + F +N +TG++ + LD
Sbjct: 121 AVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVLTSGLD 180
Query: 444 AEDKAFYTLTVSAIDQGNAGTRKQSAAKVKV 474
E YTL V A D G + A + V
Sbjct: 181 RESYPTYTLVVQAADLQGEGLSTTAKAVITV 211
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/171 (28%), Positives = 75/171 (43%), Gaps = 22/171 (12%)
Query: 99 LLIRTRTGN---TDVLNRERKDKYILHIKATITHRDGKKASYEETTCKVHVNVLDTNDLN 155
+I TG T L+RE KYIL+ +H E ++ + V D ND
Sbjct: 51 FIIERETGWLKVTQPLDREAIAKYILY-----SHAVSSNGEAVEDPMEIVITVTDQNDNR 105
Query: 156 PLFYPTEYEETVPEDLPLHTSILRVSAEDAD---LGRNGEIYYSFRDMNEQ------FSI 206
P F +E +V E TS+++VSA DAD N I Y+ + + F++
Sbjct: 106 PEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTV 165
Query: 207 HPTSGVVT-LTRPLKYTDRSVHDLVVLGQDRGSVFKGGGKPSSAKLKIKVE 256
+ +GV++ LT L + LVV D +G G ++AK I V+
Sbjct: 166 NRDTGVISVLTSGLDRESYPTYTLVVQAAD----LQGEGLSTTAKAVITVK 212
Score = 44.3 bits (103), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 53/172 (30%), Positives = 83/172 (48%), Gaps = 19/172 (11%)
Query: 493 VSINENE----PAGTSVIKVTAKDKDSGENAYISYSIANLKPVP-FEIDHFSGVIKTTQV 547
+S ENE P IK + +DK++ I+ A+ PV F I+ +G +K TQ
Sbjct: 7 ISCPENEEGEFPKNLVQIK-SNRDKETKVFYSITGQGADKPPVGVFIIERETGWLKVTQP 65
Query: 548 LDYESMRREYILRVRA-SDWGLPYRRQTEMQLKIKLLDVNDNRPQFEKVDCLGHVPRNLP 606
LD E++ + YIL A S G + M++ I + D NDNRP+F + G V
Sbjct: 66 LDREAIAK-YILYSHAVSSNG--EAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAEGAV 122
Query: 607 IGREIITLSAIDFD-----AGNIISYRIVSGNED----GCFALDITSGVLSI 649
G ++ +SA D D I+Y IVS + + F ++ +GV+S+
Sbjct: 123 PGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISV 174
Score = 39.3 bits (90), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 42/80 (52%), Gaps = 2/80 (2%)
Query: 1011 VFSIDRLTGTIRVAKPLDFEKRQVHSLVVRAKDNGSPPLYSEATLIVEVSDVNENMNAPV 1070
VF I+R TG ++V +PLD E + L A + + +++ V+D N+N P
Sbjct: 50 VFIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNR--PE 107
Query: 1071 FSDFVYQATVKENQPIGTSL 1090
F+ V++ +V E GTS+
Sbjct: 108 FTQEVFEGSVAEGAVPGTSV 127
>pdb|3LNG|A Chain A, Crystal Structure Of E-Cadherin Ec12 Aa Extension
pdb|3LNG|B Chain B, Crystal Structure Of E-Cadherin Ec12 Aa Extension
Length = 215
Score = 68.9 bits (167), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 66/217 (30%), Positives = 106/217 (48%), Gaps = 25/217 (11%)
Query: 755 PIELQVNESVPLKSTLTKIIA-RDRDLGYNGKLVFGISSGDND----SVFRIDPDSGELK 809
PI NE L +I + RD++ K+ + I+ D VF I+ ++G LK
Sbjct: 8 PISCPENEKGEFPKNLVQIKSNRDKET----KVFYSITGQGADKPPVGVFIIERETGWLK 63
Query: 810 VVGYLDRERTSEYTL-NITVYDLGKPQKSTSKMLPITILDVNDNPPKFEKSLASFRVTEN 868
V LDRE ++Y L + V G+ + +++ IT+ D NDN P+F + + V E
Sbjct: 64 VTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIV-ITVTDQNDNRPEFTQEVFEGSVAEG 122
Query: 869 ALNGTVIFKVNATDLD---LGDNAKVVYSLMTDTQD------FAVDSATGSLYV-SASLD 918
A+ GT + KV+ATD D NA + Y++++ + F V+ TG + V ++ LD
Sbjct: 123 AVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVLTSGLD 182
Query: 919 RERQDLYELKIRASDCDGRNDMYTLHADALVRVTIDD 955
RE Y L ++A+D G L A +T+ D
Sbjct: 183 RESYPTYTLVVQAADLQGEG----LSTTAKAVITVKD 215
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 59/169 (34%), Positives = 78/169 (46%), Gaps = 16/169 (9%)
Query: 410 KNAQVFLEIVGGNEG----GEFNINPETGMLYTAVTLDAEDKAFYTLTVSAIDQGNAGTR 465
K +VF I G G F I ETG L LD E A Y L A+ G
Sbjct: 32 KETKVFYSITGQGADKPPVGVFIIERETGWLKVTQPLDREAIAKYILYSHAVSSN--GEA 89
Query: 466 KQSAAKVKVNIVDTNDNDPLFDSPEMEVSINENEPAGTSVIKVTAKDKDSGENAY---IS 522
+ ++ + + D NDN P F E S+ E GTSV+KV+A D D N Y I+
Sbjct: 90 VEDPMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIA 149
Query: 523 YSIANLKP-VP----FEIDHFSGVIKT-TQVLDYESMRREYILRVRASD 565
Y+I + P +P F ++ +GVI T LD ES Y L V+A+D
Sbjct: 150 YTIVSQDPELPHKNMFTVNRDTGVISVLTSGLDRESYPT-YTLVVQAAD 197
Score = 58.2 bits (139), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 57/185 (30%), Positives = 82/185 (44%), Gaps = 17/185 (9%)
Query: 890 KVVYSLMTDTQD------FAVDSATGSLYVSASLDRERQDLYELKIRASDCDGRNDMYTL 943
KV YS+ D F ++ TG L V+ LDRE Y L A +G +
Sbjct: 35 KVFYSITGQGADKPPVGVFIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGE----AV 90
Query: 944 HADALVRVTIDDINDNAPNFALPNYSVKVREDIPVGTVVAILSASDPD---LGQGGVVRY 1000
+ +T+ D NDN P F + V E GT V +SA+D D + Y
Sbjct: 91 EDPMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAY 150
Query: 1001 TIVSDNEA---DDVFSIDRLTGTIRV-AKPLDFEKRQVHSLVVRAKDNGSPPLYSEATLI 1056
TIVS + ++F+++R TG I V LD E ++LVV+A D L + A +
Sbjct: 151 TIVSQDPELPHKNMFTVNRDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGLSTTAKAV 210
Query: 1057 VEVSD 1061
+ V D
Sbjct: 211 ITVKD 215
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 46/151 (30%), Positives = 67/151 (44%), Gaps = 9/151 (5%)
Query: 332 VLKLLDREIAPLGYNLTLRAVDKGTPPRETYKATQVHLVDLNDNKPVFDREIYEVDVPET 391
V + LDRE A Y L AV E + + D NDN+P F +E++E V E
Sbjct: 64 VTQPLDRE-AIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAEG 122
Query: 392 TPVNTPIIRLKVSDADD---GKNAQVFLEIVGGN----EGGEFNINPETGMLYTAVT-LD 443
T ++++ +DADD NA + IV + F +N +TG++ + LD
Sbjct: 123 AVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVLTSGLD 182
Query: 444 AEDKAFYTLTVSAIDQGNAGTRKQSAAKVKV 474
E YTL V A D G + A + V
Sbjct: 183 RESYPTYTLVVQAADLQGEGLSTTAKAVITV 213
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/171 (28%), Positives = 75/171 (43%), Gaps = 22/171 (12%)
Query: 99 LLIRTRTGN---TDVLNRERKDKYILHIKATITHRDGKKASYEETTCKVHVNVLDTNDLN 155
+I TG T L+RE KYIL+ +H E ++ + V D ND
Sbjct: 53 FIIERETGWLKVTQPLDREAIAKYILY-----SHAVSSNGEAVEDPMEIVITVTDQNDNR 107
Query: 156 PLFYPTEYEETVPEDLPLHTSILRVSAEDAD---LGRNGEIYYSFRDMNEQ------FSI 206
P F +E +V E TS+++VSA DAD N I Y+ + + F++
Sbjct: 108 PEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTV 167
Query: 207 HPTSGVVT-LTRPLKYTDRSVHDLVVLGQDRGSVFKGGGKPSSAKLKIKVE 256
+ +GV++ LT L + LVV D +G G ++AK I V+
Sbjct: 168 NRDTGVISVLTSGLDRESYPTYTLVVQAAD----LQGEGLSTTAKAVITVK 214
Score = 44.3 bits (103), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 53/172 (30%), Positives = 83/172 (48%), Gaps = 19/172 (11%)
Query: 493 VSINENE----PAGTSVIKVTAKDKDSGENAYISYSIANLKPVP-FEIDHFSGVIKTTQV 547
+S ENE P IK + +DK++ I+ A+ PV F I+ +G +K TQ
Sbjct: 9 ISCPENEKGEFPKNLVQIK-SNRDKETKVFYSITGQGADKPPVGVFIIERETGWLKVTQP 67
Query: 548 LDYESMRREYILRVRA-SDWGLPYRRQTEMQLKIKLLDVNDNRPQFEKVDCLGHVPRNLP 606
LD E++ + YIL A S G + M++ I + D NDNRP+F + G V
Sbjct: 68 LDREAIAK-YILYSHAVSSNG--EAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAEGAV 124
Query: 607 IGREIITLSAIDFD-----AGNIISYRIVSGNED----GCFALDITSGVLSI 649
G ++ +SA D D I+Y IVS + + F ++ +GV+S+
Sbjct: 125 PGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISV 176
Score = 39.3 bits (90), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 42/80 (52%), Gaps = 2/80 (2%)
Query: 1011 VFSIDRLTGTIRVAKPLDFEKRQVHSLVVRAKDNGSPPLYSEATLIVEVSDVNENMNAPV 1070
VF I+R TG ++V +PLD E + L A + + +++ V+D N+N P
Sbjct: 52 VFIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNR--PE 109
Query: 1071 FSDFVYQATVKENQPIGTSL 1090
F+ V++ +V E GTS+
Sbjct: 110 FTQEVFEGSVAEGAVPGTSV 129
>pdb|3LNF|A Chain A, Crystal Structure Of E-Cadherin Ec12 K14ew2a
pdb|3LNF|B Chain B, Crystal Structure Of E-Cadherin Ec12 K14ew2a
Length = 213
Score = 68.6 bits (166), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 66/217 (30%), Positives = 106/217 (48%), Gaps = 25/217 (11%)
Query: 755 PIELQVNESVPLKSTLTKIIA-RDRDLGYNGKLVFGISSGDND----SVFRIDPDSGELK 809
PI NE L +I + RD++ K+ + I+ D VF I+ ++G LK
Sbjct: 6 PISCPENEEGEFPKNLVQIKSNRDKET----KVFYSITGQGADKPPVGVFIIERETGWLK 61
Query: 810 VVGYLDRERTSEYTL-NITVYDLGKPQKSTSKMLPITILDVNDNPPKFEKSLASFRVTEN 868
V LDRE ++Y L + V G+ + +++ IT+ D NDN P+F + + V E
Sbjct: 62 VTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIV-ITVTDQNDNRPEFTQEVFEGSVAEG 120
Query: 869 ALNGTVIFKVNATDLD---LGDNAKVVYSLMTDTQD------FAVDSATGSLYV-SASLD 918
A+ GT + KV+ATD D NA + Y++++ + F V+ TG + V ++ LD
Sbjct: 121 AVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVLTSGLD 180
Query: 919 RERQDLYELKIRASDCDGRNDMYTLHADALVRVTIDD 955
RE Y L ++A+D G L A +T+ D
Sbjct: 181 RESYPTYTLVVQAADLQGEG----LSTTAKAVITVKD 213
Score = 61.2 bits (147), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 59/169 (34%), Positives = 78/169 (46%), Gaps = 16/169 (9%)
Query: 410 KNAQVFLEIVGGNEG----GEFNINPETGMLYTAVTLDAEDKAFYTLTVSAIDQGNAGTR 465
K +VF I G G F I ETG L LD E A Y L A+ G
Sbjct: 30 KETKVFYSITGQGADKPPVGVFIIERETGWLKVTQPLDREAIAKYILYSHAVSSN--GEA 87
Query: 466 KQSAAKVKVNIVDTNDNDPLFDSPEMEVSINENEPAGTSVIKVTAKDKDSGENAY---IS 522
+ ++ + + D NDN P F E S+ E GTSV+KV+A D D N Y I+
Sbjct: 88 VEDPMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIA 147
Query: 523 YSIANLKP-VP----FEIDHFSGVIKT-TQVLDYESMRREYILRVRASD 565
Y+I + P +P F ++ +GVI T LD ES Y L V+A+D
Sbjct: 148 YTIVSQDPELPHKNMFTVNRDTGVISVLTSGLDRESYPT-YTLVVQAAD 195
Score = 57.8 bits (138), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 57/185 (30%), Positives = 82/185 (44%), Gaps = 17/185 (9%)
Query: 890 KVVYSLMTDTQD------FAVDSATGSLYVSASLDRERQDLYELKIRASDCDGRNDMYTL 943
KV YS+ D F ++ TG L V+ LDRE Y L A +G +
Sbjct: 33 KVFYSITGQGADKPPVGVFIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGE----AV 88
Query: 944 HADALVRVTIDDINDNAPNFALPNYSVKVREDIPVGTVVAILSASDPD---LGQGGVVRY 1000
+ +T+ D NDN P F + V E GT V +SA+D D + Y
Sbjct: 89 EDPMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAY 148
Query: 1001 TIVSDNEA---DDVFSIDRLTGTIRV-AKPLDFEKRQVHSLVVRAKDNGSPPLYSEATLI 1056
TIVS + ++F+++R TG I V LD E ++LVV+A D L + A +
Sbjct: 149 TIVSQDPELPHKNMFTVNRDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGLSTTAKAV 208
Query: 1057 VEVSD 1061
+ V D
Sbjct: 209 ITVKD 213
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 46/151 (30%), Positives = 67/151 (44%), Gaps = 9/151 (5%)
Query: 332 VLKLLDREIAPLGYNLTLRAVDKGTPPRETYKATQVHLVDLNDNKPVFDREIYEVDVPET 391
V + LDRE A Y L AV E + + D NDN+P F +E++E V E
Sbjct: 62 VTQPLDRE-AIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAEG 120
Query: 392 TPVNTPIIRLKVSDADD---GKNAQVFLEIVGGN----EGGEFNINPETGMLYTAVT-LD 443
T ++++ +DADD NA + IV + F +N +TG++ + LD
Sbjct: 121 AVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVLTSGLD 180
Query: 444 AEDKAFYTLTVSAIDQGNAGTRKQSAAKVKV 474
E YTL V A D G + A + V
Sbjct: 181 RESYPTYTLVVQAADLQGEGLSTTAKAVITV 211
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/171 (28%), Positives = 75/171 (43%), Gaps = 22/171 (12%)
Query: 99 LLIRTRTGN---TDVLNRERKDKYILHIKATITHRDGKKASYEETTCKVHVNVLDTNDLN 155
+I TG T L+RE KYIL+ +H E ++ + V D ND
Sbjct: 51 FIIERETGWLKVTQPLDREAIAKYILY-----SHAVSSNGEAVEDPMEIVITVTDQNDNR 105
Query: 156 PLFYPTEYEETVPEDLPLHTSILRVSAEDAD---LGRNGEIYYSFRDMNEQ------FSI 206
P F +E +V E TS+++VSA DAD N I Y+ + + F++
Sbjct: 106 PEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTV 165
Query: 207 HPTSGVVT-LTRPLKYTDRSVHDLVVLGQDRGSVFKGGGKPSSAKLKIKVE 256
+ +GV++ LT L + LVV D +G G ++AK I V+
Sbjct: 166 NRDTGVISVLTSGLDRESYPTYTLVVQAAD----LQGEGLSTTAKAVITVK 212
Score = 44.3 bits (103), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 53/172 (30%), Positives = 83/172 (48%), Gaps = 19/172 (11%)
Query: 493 VSINENE----PAGTSVIKVTAKDKDSGENAYISYSIANLKPVP-FEIDHFSGVIKTTQV 547
+S ENE P IK + +DK++ I+ A+ PV F I+ +G +K TQ
Sbjct: 7 ISCPENEEGEFPKNLVQIK-SNRDKETKVFYSITGQGADKPPVGVFIIERETGWLKVTQP 65
Query: 548 LDYESMRREYILRVRA-SDWGLPYRRQTEMQLKIKLLDVNDNRPQFEKVDCLGHVPRNLP 606
LD E++ + YIL A S G + M++ I + D NDNRP+F + G V
Sbjct: 66 LDREAIAK-YILYSHAVSSNG--EAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAEGAV 122
Query: 607 IGREIITLSAIDFD-----AGNIISYRIVSGNED----GCFALDITSGVLSI 649
G ++ +SA D D I+Y IVS + + F ++ +GV+S+
Sbjct: 123 PGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISV 174
Score = 39.3 bits (90), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 42/80 (52%), Gaps = 2/80 (2%)
Query: 1011 VFSIDRLTGTIRVAKPLDFEKRQVHSLVVRAKDNGSPPLYSEATLIVEVSDVNENMNAPV 1070
VF I+R TG ++V +PLD E + L A + + +++ V+D N+N P
Sbjct: 50 VFIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNR--PE 107
Query: 1071 FSDFVYQATVKENQPIGTSL 1090
F+ V++ +V E GTS+
Sbjct: 108 FTQEVFEGSVAEGAVPGTSV 127
>pdb|3LNH|A Chain A, Crystal Structure Of E-Cadherin Ec12 W2a
pdb|3LNH|B Chain B, Crystal Structure Of E-Cadherin Ec12 W2a
Length = 213
Score = 68.6 bits (166), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 66/217 (30%), Positives = 106/217 (48%), Gaps = 25/217 (11%)
Query: 755 PIELQVNESVPLKSTLTKIIA-RDRDLGYNGKLVFGISSGDND----SVFRIDPDSGELK 809
PI NE L +I + RD++ K+ + I+ D VF I+ ++G LK
Sbjct: 6 PISCPENEKGEFPKNLVQIKSNRDKET----KVFYSITGQGADKPPVGVFIIERETGWLK 61
Query: 810 VVGYLDRERTSEYTL-NITVYDLGKPQKSTSKMLPITILDVNDNPPKFEKSLASFRVTEN 868
V LDRE ++Y L + V G+ + +++ IT+ D NDN P+F + + V E
Sbjct: 62 VTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIV-ITVTDQNDNRPEFTQEVFEGSVAEG 120
Query: 869 ALNGTVIFKVNATDLD---LGDNAKVVYSLMTDTQD------FAVDSATGSLYV-SASLD 918
A+ GT + KV+ATD D NA + Y++++ + F V+ TG + V ++ LD
Sbjct: 121 AVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVLTSGLD 180
Query: 919 RERQDLYELKIRASDCDGRNDMYTLHADALVRVTIDD 955
RE Y L ++A+D G L A +T+ D
Sbjct: 181 RESYPTYTLVVQAADLQGEG----LSTTAKAVITVKD 213
Score = 61.2 bits (147), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 59/169 (34%), Positives = 78/169 (46%), Gaps = 16/169 (9%)
Query: 410 KNAQVFLEIVGGNEG----GEFNINPETGMLYTAVTLDAEDKAFYTLTVSAIDQGNAGTR 465
K +VF I G G F I ETG L LD E A Y L A+ G
Sbjct: 30 KETKVFYSITGQGADKPPVGVFIIERETGWLKVTQPLDREAIAKYILYSHAVSSN--GEA 87
Query: 466 KQSAAKVKVNIVDTNDNDPLFDSPEMEVSINENEPAGTSVIKVTAKDKDSGENAY---IS 522
+ ++ + + D NDN P F E S+ E GTSV+KV+A D D N Y I+
Sbjct: 88 VEDPMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIA 147
Query: 523 YSIANLKP-VP----FEIDHFSGVIKT-TQVLDYESMRREYILRVRASD 565
Y+I + P +P F ++ +GVI T LD ES Y L V+A+D
Sbjct: 148 YTIVSQDPELPHKNMFTVNRDTGVISVLTSGLDRESYPT-YTLVVQAAD 195
Score = 57.8 bits (138), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 57/185 (30%), Positives = 82/185 (44%), Gaps = 17/185 (9%)
Query: 890 KVVYSLMTDTQD------FAVDSATGSLYVSASLDRERQDLYELKIRASDCDGRNDMYTL 943
KV YS+ D F ++ TG L V+ LDRE Y L A +G +
Sbjct: 33 KVFYSITGQGADKPPVGVFIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGE----AV 88
Query: 944 HADALVRVTIDDINDNAPNFALPNYSVKVREDIPVGTVVAILSASDPD---LGQGGVVRY 1000
+ +T+ D NDN P F + V E GT V +SA+D D + Y
Sbjct: 89 EDPMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAY 148
Query: 1001 TIVSDNEA---DDVFSIDRLTGTIRV-AKPLDFEKRQVHSLVVRAKDNGSPPLYSEATLI 1056
TIVS + ++F+++R TG I V LD E ++LVV+A D L + A +
Sbjct: 149 TIVSQDPELPHKNMFTVNRDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGLSTTAKAV 208
Query: 1057 VEVSD 1061
+ V D
Sbjct: 209 ITVKD 213
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 46/151 (30%), Positives = 67/151 (44%), Gaps = 9/151 (5%)
Query: 332 VLKLLDREIAPLGYNLTLRAVDKGTPPRETYKATQVHLVDLNDNKPVFDREIYEVDVPET 391
V + LDRE A Y L AV E + + D NDN+P F +E++E V E
Sbjct: 62 VTQPLDRE-AIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAEG 120
Query: 392 TPVNTPIIRLKVSDADD---GKNAQVFLEIVGGN----EGGEFNINPETGMLYTAVT-LD 443
T ++++ +DADD NA + IV + F +N +TG++ + LD
Sbjct: 121 AVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVLTSGLD 180
Query: 444 AEDKAFYTLTVSAIDQGNAGTRKQSAAKVKV 474
E YTL V A D G + A + V
Sbjct: 181 RESYPTYTLVVQAADLQGEGLSTTAKAVITV 211
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/171 (28%), Positives = 75/171 (43%), Gaps = 22/171 (12%)
Query: 99 LLIRTRTGN---TDVLNRERKDKYILHIKATITHRDGKKASYEETTCKVHVNVLDTNDLN 155
+I TG T L+RE KYIL+ +H E ++ + V D ND
Sbjct: 51 FIIERETGWLKVTQPLDREAIAKYILY-----SHAVSSNGEAVEDPMEIVITVTDQNDNR 105
Query: 156 PLFYPTEYEETVPEDLPLHTSILRVSAEDAD---LGRNGEIYYSFRDMNEQ------FSI 206
P F +E +V E TS+++VSA DAD N I Y+ + + F++
Sbjct: 106 PEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTV 165
Query: 207 HPTSGVVT-LTRPLKYTDRSVHDLVVLGQDRGSVFKGGGKPSSAKLKIKVE 256
+ +GV++ LT L + LVV D +G G ++AK I V+
Sbjct: 166 NRDTGVISVLTSGLDRESYPTYTLVVQAAD----LQGEGLSTTAKAVITVK 212
Score = 44.3 bits (103), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 53/172 (30%), Positives = 83/172 (48%), Gaps = 19/172 (11%)
Query: 493 VSINENE----PAGTSVIKVTAKDKDSGENAYISYSIANLKPVP-FEIDHFSGVIKTTQV 547
+S ENE P IK + +DK++ I+ A+ PV F I+ +G +K TQ
Sbjct: 7 ISCPENEKGEFPKNLVQIK-SNRDKETKVFYSITGQGADKPPVGVFIIERETGWLKVTQP 65
Query: 548 LDYESMRREYILRVRA-SDWGLPYRRQTEMQLKIKLLDVNDNRPQFEKVDCLGHVPRNLP 606
LD E++ + YIL A S G + M++ I + D NDNRP+F + G V
Sbjct: 66 LDREAIAK-YILYSHAVSSNGEAV--EDPMEIVITVTDQNDNRPEFTQEVFEGSVAEGAV 122
Query: 607 IGREIITLSAIDFD-----AGNIISYRIVSGNED----GCFALDITSGVLSI 649
G ++ +SA D D I+Y IVS + + F ++ +GV+S+
Sbjct: 123 PGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISV 174
Score = 39.3 bits (90), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 42/80 (52%), Gaps = 2/80 (2%)
Query: 1011 VFSIDRLTGTIRVAKPLDFEKRQVHSLVVRAKDNGSPPLYSEATLIVEVSDVNENMNAPV 1070
VF I+R TG ++V +PLD E + L A + + +++ V+D N+N P
Sbjct: 50 VFIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNR--PE 107
Query: 1071 FSDFVYQATVKENQPIGTSL 1090
F+ V++ +V E GTS+
Sbjct: 108 FTQEVFEGSVAEGAVPGTSV 127
>pdb|3UBF|A Chain A, Crystal Structure Of Drosophila N-Cadherin Ec1-3, I
pdb|3UBG|A Chain A, Crystal Structure Of Drosophila N-Cadherin Ec1-3, Ii
pdb|3UBG|B Chain B, Crystal Structure Of Drosophila N-Cadherin Ec1-3, Ii
Length = 316
Score = 68.6 bits (166), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 84/308 (27%), Positives = 143/308 (46%), Gaps = 38/308 (12%)
Query: 784 GKLVFGISSGDNDSVFRIDPDS--------GELKVVGYLDRE-----RTSEYTLNITVYD 830
GK VF + + F+I D+ G ++V D E +T ++ + IT
Sbjct: 20 GKSVFQLEKETDKETFKIRDDNPWVTVETNGAVRVKKKWDYEELGPEKTIDFWVIITNMG 79
Query: 831 LGKPQKST-SKMLPITILDVNDNPPKF-EKSLASFRVTE-NALNGTVIFKVNATDLDLGD 887
K T ++ + I + DVND PP F + L V + NA T +F + A D D
Sbjct: 80 HNAGIKYTDNQRVIILVKDVNDEPPYFINRPLPMQAVVQLNAPPNTPVFTLQARDPDTDH 139
Query: 888 NAKVVYSLMTDTQD--FAVDSATGSLYVSAS----LDRERQDLYELKIRASDCDGRNDMY 941
N + Y ++ D F VD +G + + LD E Y L ++A D +G+ D
Sbjct: 140 N--IHYFIVRDRTGGRFEVDERSGVVRTRGTDLFQLDME----YVLYVKAEDQNGKVDDR 193
Query: 942 TLHADALVRVTIDDINDNAPNFALPNYSVKVREDIPVGT-VVAILSASDPDLGQGGVVRY 1000
+ R++I AP F +P+Y ++ E+ + +++I + S D +RY
Sbjct: 194 RFQSTPEERLSIVG-GKRAPQFYMPSYEAEIPENQKKDSDIISIKAKSFADRE----IRY 248
Query: 1001 TIVSDNEADDVFSIDRLTGTIRVAKPLDFE---KRQVHSLVVRAKDNGSPPLYSEATLIV 1057
T+ + + F+I +G +++AK LDFE + V+SL+V A ++ S + L +
Sbjct: 249 TLKAQGQGAGTFNIGPTSGIVKLAKELDFEDLRQPHVYSLIVTATED-SGGFSTSVDLTI 307
Query: 1058 EVSDVNEN 1065
V+DVN+N
Sbjct: 308 RVTDVNDN 315
Score = 67.0 bits (162), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 71/228 (31%), Positives = 106/228 (46%), Gaps = 20/228 (8%)
Query: 371 DLNDNKPVF-DREI-YEVDVPETTPVNTPIIRLKVSDADDGKNAQVFLEIVGGNEGGEFN 428
D+ND P F +R + + V P NTP+ L+ D D N F IV GG F
Sbjct: 98 DVNDEPPYFINRPLPMQAVVQLNAPPNTPVFTLQARDPDTDHNIHYF--IVRDRTGGRFE 155
Query: 429 INPETGMLYTAVT----LDAEDKAFYTLTVSAIDQ-GNAGTRK-QSAAKVKVNIVDTNDN 482
++ +G++ T T LD E Y L V A DQ G R+ QS + +++IV
Sbjct: 156 VDERSGVVRTRGTDLFQLDME----YVLYVKAEDQNGKVDDRRFQSTPEERLSIV-GGKR 210
Query: 483 DPLFDSPEMEVSINENEPAGTSVIKVTAKDKDSGENAYISYSIANLKPVPFEIDHFSGVI 542
P F P E I EN+ + +I + AK E Y + F I SG++
Sbjct: 211 APQFYMPSYEAEIPENQKKDSDIISIKAKSFADREIRY-TLKAQGQGAGTFNIGPTSGIV 269
Query: 543 KTTQVLDYESMRREYI--LRVRASDWGLPYRRQTEMQLKIKLLDVNDN 588
K + LD+E +R+ ++ L V A++ + T + L I++ DVNDN
Sbjct: 270 KLAKELDFEDLRQPHVYSLIVTATEDSGGF--STSVDLTIRVTDVNDN 315
Score = 63.9 bits (154), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 70/232 (30%), Positives = 109/232 (46%), Gaps = 12/232 (5%)
Query: 461 NAGTRKQSAAKVKVNIVDTNDNDPLF-DSP-EMEVSINENEPAGTSVIKVTAKDKDSGEN 518
NAG + +V + + D ND P F + P M+ + N P T V + A+D D+ N
Sbjct: 81 NAGIKYTDNQRVIILVKDVNDEPPYFINRPLPMQAVVQLNAPPNTPVFTLQARDPDTDHN 140
Query: 519 AYISYSIANLKPVPFEIDHFSGVIKTTQVLDYESMRREYILRVRASDW-GLPYRRQTEMQ 577
+ + + + FE+D SGV++T + D + EY+L V+A D G R+ +
Sbjct: 141 IHY-FIVRDRTGGRFEVDERSGVVRT-RGTDLFQLDMEYVLYVKAEDQNGKVDDRRFQST 198
Query: 578 LKIKLLDVNDNR-PQFEKVDCLGHVPRNLPIGREIITLSAIDFDAGNIISYRI-VSGNED 635
+ +L V R PQF +P N +II++ A F A I Y + G
Sbjct: 199 PEERLSIVGGKRAPQFYMPSYEAEIPENQKKDSDIISIKAKSF-ADREIRYTLKAQGQGA 257
Query: 636 GCFALDITSGVLSIA--CDLTDVRV-NEREINVTAT-DSAHFSDVVRIRINL 683
G F + TSG++ +A D D+R + + VTAT DS FS V + I +
Sbjct: 258 GTFNIGPTSGIVKLAKELDFEDLRQPHVYSLIVTATEDSGGFSTSVDLTIRV 309
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/164 (27%), Positives = 79/164 (48%), Gaps = 22/164 (13%)
Query: 104 RTGNTDVLNRERKDKYILHIKATITHRDGKKASYE-ETTCKVHVNVLDTNDLNPLFYPTE 162
RT TD+ + + Y+L++KA ++GK ++T + ++++ P FY
Sbjct: 164 RTRGTDLFQLDME--YVLYVKAE--DQNGKVDDRRFQSTPEERLSIV-GGKRAPQFYMPS 218
Query: 163 YEETVPEDLPLHTSILRVSAED-ADLGRNGEIYYSFRDMNE---QFSIHPTSGVVTLTRP 218
YE +PE+ + I+ + A+ AD EI Y+ + + F+I PTSG+V L +
Sbjct: 219 YEAEIPENQKKDSDIISIKAKSFADR----EIRYTLKAQGQGAGTFNIGPTSGIVKLAKE 274
Query: 219 LKYTDR---SVHDLVVLGQDRGSVFKGGGKPSSAKLKIKVEQIN 259
L + D V+ L+V + GG +S L I+V +N
Sbjct: 275 LDFEDLRQPHVYSLIVTATE-----DSGGFSTSVDLTIRVTDVN 313
>pdb|3PPE|A Chain A, Crystal Structure Of Chicken Ve-Cadherin Ec1-2
pdb|3PPE|B Chain B, Crystal Structure Of Chicken Ve-Cadherin Ec1-2
Length = 203
Score = 68.2 bits (165), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 47/159 (29%), Positives = 78/159 (49%), Gaps = 6/159 (3%)
Query: 783 NGKLVFGISSGDNDSVFRIDPDSGELKVVGYLDRERTSEYTLNITVYDL--GKPQKSTSK 840
N ++ I +++F++ G++ LDRE+ +EY L + D + + SK
Sbjct: 30 NKNAMYIIEGESANTIFKVQGYDGDIYAFERLDREKKAEYELTAHIIDRRNNRSLEPPSK 89
Query: 841 MLPITILDVNDNPPKFEKSLASFRVTENALNGTVIFKVNATDLD---LGDNAKVVYSLMT 897
+ I + D+NDN P F + + + V E + GT + KV A D D + +A V Y ++
Sbjct: 90 FI-IKVSDINDNAPIFVQKIFNGSVPEMSRLGTSVTKVTAEDADDPTVAGHATVTYQIIK 148
Query: 898 DTQDFAVDSATGSLYVSASLDRERQDLYELKIRASDCDG 936
+ F VD + A LDRE Q YE+ ++A D G
Sbjct: 149 GNEYFTVDDSGVIFTARADLDRESQSAYEIIVKAKDALG 187
Score = 62.0 bits (149), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 55/165 (33%), Positives = 83/165 (50%), Gaps = 12/165 (7%)
Query: 902 FAVDSATGSLYVSASLDRERQDLYELKIRASDCDGRNDMYTLHADALVRVTIDDINDNAP 961
F V G +Y LDRE++ YEL A D RN+ +L + + + DINDNAP
Sbjct: 46 FKVQGYDGDIYAFERLDREKKAEYELT--AHIIDRRNNR-SLEPPSKFIIKVSDINDNAP 102
Query: 962 NFALPNYSVKVREDIPVGTVVAILSAS---DPDLGQGGVVRYTIVSDNEADDVFSIDRLT 1018
F ++ V E +GT V ++A DP + V Y I+ NE F++D +
Sbjct: 103 IFVQKIFNGSVPEMSRLGTSVTKVTAEDADDPTVAGHATVTYQIIKGNE---YFTVDD-S 158
Query: 1019 GTIRVAKP-LDFEKRQVHSLVVRAKDN-GSPPLYSEATLIVEVSD 1061
G I A+ LD E + + ++V+AKD G S AT+I+ ++D
Sbjct: 159 GVIFTARADLDRESQSAYEIIVKAKDALGLTGESSTATVIIRLTD 203
Score = 56.6 bits (135), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 48/159 (30%), Positives = 81/159 (50%), Gaps = 18/159 (11%)
Query: 329 NIVVLKLLDREIAPLGYNLTLRAVDKGT-----PPRETYKATQVHLVDLNDNKPVFDREI 383
+I + LDRE Y LT +D+ PP + + + D+NDN P+F ++I
Sbjct: 54 DIYAFERLDRE-KKAEYELTAHIIDRRNNRSLEPPSKFI----IKVSDINDNAPIFVQKI 108
Query: 384 YEVDVPETTPVNTPIIRLKVSDADD---GKNAQVFLEIVGGNEGGEFNINPETGMLYTA- 439
+ VPE + + T + ++ DADD +A V +I+ GNE F ++ ++G+++TA
Sbjct: 109 FNGSVPEMSRLGTSVTKVTAEDADDPTVAGHATVTYQIIKGNE--YFTVD-DSGVIFTAR 165
Query: 440 VTLDAEDKAFYTLTVSAIDQGNAGTRKQSAAKVKVNIVD 478
LD E ++ Y + V A D T + S A V + + D
Sbjct: 166 ADLDRESQSAYEIIVKAKDALGL-TGESSTATVIIRLTD 203
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 57/168 (33%), Positives = 81/168 (48%), Gaps = 10/168 (5%)
Query: 402 KVSDADDGKNAQVFLEIVGGNEGGEFNINPETGMLYTAVTLDAEDKAFYTLTVSAIDQGN 461
K++ + KNA +E G + F + G +Y LD E KA Y LT ID+ N
Sbjct: 23 KLTSSVGNKNAMYIIE--GESANTIFKVQGYDGDIYAFERLDREKKAEYELTAHIIDRRN 80
Query: 462 AGTRKQSAAKVKVNIVDTNDNDPLFDSPEMEVSINENEPAGTSVIKVTAKDKDS---GEN 518
+ + +K + + D NDN P+F S+ E GTSV KVTA+D D +
Sbjct: 81 NRSL-EPPSKFIIKVSDINDNAPIFVQKIFNGSVPEMSRLGTSVTKVTAEDADDPTVAGH 139
Query: 519 AYISYSIANLKPVPFEIDHFSGVIKTTQV-LDYESMRREYILRVRASD 565
A ++Y I F +D SGVI T + LD ES + Y + V+A D
Sbjct: 140 ATVTYQIIKGNEY-FTVDD-SGVIFTARADLDRES-QSAYEIIVKAKD 184
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/148 (27%), Positives = 72/148 (48%), Gaps = 10/148 (6%)
Query: 111 LNRERKDKYILHIKATITHRDGKKASYEETTCKVHVNVLDTNDLNPLFYPTEYEETVPED 170
L+RE+K +Y + A I R ++ E K + V D ND P+F + +VPE
Sbjct: 61 LDREKKAEY--ELTAHIIDRRNNRSL--EPPSKFIIKVSDINDNAPIFVQKIFNGSVPEM 116
Query: 171 LPLHTSILRVSAEDAD---LGRNGEIYYSFRDMNEQFSIHPTSGVVTLTRPLKYTDRSVH 227
L TS+ +V+AEDAD + + + Y NE F++ + + T L +S +
Sbjct: 117 SRLGTSVTKVTAEDADDPTVAGHATVTYQIIKGNEYFTVDDSGVIFTARADLDRESQSAY 176
Query: 228 DLVVLGQDRGSVFKGGGKPSSAKLKIKV 255
+++V +D G+ S+A + I++
Sbjct: 177 EIIVKAKD---ALGLTGESSTATVIIRL 201
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 66/143 (46%), Gaps = 8/143 (5%)
Query: 533 FEIDHFSGVIKTTQVLDYESMRREYILRVRASDWGLPYRRQTEMQLKIKLLDVNDNRPQF 592
F++ + G I + LD E + EY L D + + IK+ D+NDN P F
Sbjct: 46 FKVQGYDGDIYAFERLDREK-KAEYELTAHIIDRRNNRSLEPPSKFIIKVSDINDNAPIF 104
Query: 593 EKVDCLGHVPRNLPIGREIITLSAIDFD----AGN-IISYRIVSGNEDGCFALDITSGVL 647
+ G VP +G + ++A D D AG+ ++Y+I+ GNE F +D + +
Sbjct: 105 VQKIFNGSVPEMSRLGTSVTKVTAEDADDPTVAGHATVTYQIIKGNE--YFTVDDSGVIF 162
Query: 648 SIACDLTDVRVNEREINVTATDS 670
+ DL + EI V A D+
Sbjct: 163 TARADLDRESQSAYEIIVKAKDA 185
Score = 40.4 bits (93), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 50/94 (53%), Gaps = 11/94 (11%)
Query: 1002 IVSDNEADDVFSIDRLTGTIRVAKPLDFEKRQVHSL---VVRAKDNGS--PPLYSEATLI 1056
I+ A+ +F + G I + LD EK+ + L ++ ++N S PP + I
Sbjct: 36 IIEGESANTIFKVQGYDGDIYAFERLDREKKAEYELTAHIIDRRNNRSLEPP----SKFI 91
Query: 1057 VEVSDVNENMNAPVFSDFVYQATVKENQPIGTSL 1090
++VSD+N+N AP+F ++ +V E +GTS+
Sbjct: 92 IKVSDINDN--APIFVQKIFNGSVPEMSRLGTSV 123
>pdb|3K5R|A Chain A, Crystal Structure Of Mouse T-Cadherin Ec1 Ec2
pdb|3K5R|B Chain B, Crystal Structure Of Mouse T-Cadherin Ec1 Ec2
Length = 218
Score = 67.8 bits (164), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 62/214 (28%), Positives = 89/214 (41%), Gaps = 15/214 (7%)
Query: 755 PIELQVNESVPLKSTLTKIIARDRDLGYNGKLVFGISSGDNDSVFRIDPDSGELKVVGYL 814
PI + N+ P + K++ DR G +L D FRI+ ++G + V L
Sbjct: 7 PILIPENQRQPFPRDVGKVVDSDRPEGSKFRLTGKGVDQDPKGTFRINENTGSVSVTRTL 66
Query: 815 DRERTSEYTLNITVYDLGKPQKSTSKMLPITILDVNDNPPKFEKSLASFRVTENALNGTV 874
DRE + Y L + D L + ++D NDN P F + V E + GT
Sbjct: 67 DRETIATYQLYVETTDASGKTLEGPVPLEVIVIDQNDNRPIFREGPYIGHVMEGSPTGTT 126
Query: 875 IFKVNATDLD--LGDNAKVVYSLMTDTQD------FAVDSATGSLYVSAS---LDRE--R 921
+ ++ A D D DNA + Y++ T D F +D G + S LDRE
Sbjct: 127 VMRMTAFDADDPATDNALLRYNIRQQTPDKPSPNMFYIDPEKGDIVTVVSPALLDRETLE 186
Query: 922 QDLYELKIRASDCDGRNDMYTLHADALVRVTIDD 955
YEL I A D G + L A + IDD
Sbjct: 187 NPKYELIIEAQDMAGLD--VGLTGTATATIVIDD 218
Score = 61.2 bits (147), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 83/175 (47%), Gaps = 13/175 (7%)
Query: 404 SDADDGKNAQVFLEIVGGNEGGEFNINPETGMLYTAVTLDAEDKAFYTLTVSAIDQGNAG 463
SD +G ++ + V + G F IN TG + TLD E A Y L V D +G
Sbjct: 28 SDRPEGSKFRLTGKGVDQDPKGTFRINENTGSVSVTRTLDRETIATYQLYVETTDA--SG 85
Query: 464 TRKQSAAKVKVNIVDTNDNDPLFDSPEMEVSINENEPAGTSVIKVTAKDKD--SGENAYI 521
+ ++V ++D NDN P+F + E P GT+V+++TA D D + +NA +
Sbjct: 86 KTLEGPVPLEVIVIDQNDNRPIFREGPYIGHVMEGSPTGTTVMRMTAFDADDPATDNALL 145
Query: 522 SYSIANL---KPVP--FEIDHFSGVIKTT---QVLDYESMRR-EYILRVRASDWG 567
Y+I KP P F ID G I T +LD E++ +Y L + A D
Sbjct: 146 RYNIRQQTPDKPSPNMFYIDPEKGDIVTVVSPALLDRETLENPKYELIIEAQDMA 200
Score = 54.7 bits (130), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 46/152 (30%), Positives = 71/152 (46%), Gaps = 14/152 (9%)
Query: 902 FAVDSATGSLYVSASLDRERQDLYELKIRASDCDGRNDMYTLHADALVRVTIDDINDNAP 961
F ++ TGS+ V+ +LDRE Y+L + +D G+ TL + V + D NDN P
Sbjct: 51 FRINENTGSVSVTRTLDRETIATYQLYVETTDASGK----TLEGPVPLEVIVIDQNDNRP 106
Query: 962 NFALPNYSVKVREDIPVGTVVAILSASDPD--LGQGGVVRYTI---VSDNEADDVFSIDR 1016
F Y V E P GT V ++A D D ++RY I D + ++F ID
Sbjct: 107 IFREGPYIGHVMEGSPTGTTVMRMTAFDADDPATDNALLRYNIRQQTPDKPSPNMFYIDP 166
Query: 1017 LTGTI-RVAKPLDFEKRQV----HSLVVRAKD 1043
G I V P ++ + + L++ A+D
Sbjct: 167 EKGDIVTVVSPALLDRETLENPKYELIIEAQD 198
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/166 (29%), Positives = 69/166 (41%), Gaps = 21/166 (12%)
Query: 304 VDGDPDGHFRIVPTKIDPGTKKKEYNIVVLKLLDREIAPLGYNLTLRAVDKGTPPRETYK 363
VD DP G FRI + ++ V + LDRE Y L + D E
Sbjct: 43 VDQDPKGTFRI---------NENTGSVSVTRTLDRETI-ATYQLYVETTDASGKTLEGPV 92
Query: 364 ATQVHLVDLNDNKPVFDREIYEVDVPETTPVNTPIIRLKVSDADDGKNAQVFL------E 417
+V ++D NDN+P+F Y V E +P T ++R+ DADD L +
Sbjct: 93 PLEVIVIDQNDNRPIFREGPYIGHVMEGSPTGTTVMRMTAFDADDPATDNALLRYNIRQQ 152
Query: 418 IVGGNEGGEFNINPETGMLYTAVT---LDAE--DKAFYTLTVSAID 458
F I+PE G + T V+ LD E + Y L + A D
Sbjct: 153 TPDKPSPNMFYIDPEKGDIVTVVSPALLDRETLENPKYELIIEAQD 198
Score = 47.0 bits (110), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 60/126 (47%), Gaps = 3/126 (2%)
Query: 496 NENEPAGTSVIKVTAKDKDSGENAYISYSIANLKPV-PFEIDHFSGVIKTTQVLDYESMR 554
N+ +P V KV D+ G ++ + P F I+ +G + T+ LD E++
Sbjct: 13 NQRQPFPRDVGKVVDSDRPEGSKFRLTGKGVDQDPKGTFRINENTGSVSVTRTLDRETIA 72
Query: 555 REYILRVRASDWGLPYRRQTEMQLKIKLLDVNDNRPQFEKVDCLGHVPRNLPIGREIITL 614
Y L V +D + + L++ ++D NDNRP F + +GHV P G ++ +
Sbjct: 73 -TYQLYVETTDASG-KTLEGPVPLEVIVIDQNDNRPIFREGPYIGHVMEGSPTGTTVMRM 130
Query: 615 SAIDFD 620
+A D D
Sbjct: 131 TAFDAD 136
Score = 40.4 bits (93), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 41/86 (47%), Gaps = 2/86 (2%)
Query: 1005 DNEADDVFSIDRLTGTIRVAKPLDFEKRQVHSLVVRAKDNGSPPLYSEATLIVEVSDVNE 1064
D + F I+ TG++ V + LD E + L V D L E + +EV +++
Sbjct: 44 DQDPKGTFRINENTGSVSVTRTLDRETIATYQLYVETTDASGKTL--EGPVPLEVIVIDQ 101
Query: 1065 NMNAPVFSDFVYQATVKENQPIGTSL 1090
N N P+F + Y V E P GT++
Sbjct: 102 NDNRPIFREGPYIGHVMEGSPTGTTV 127
Score = 38.5 bits (88), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 45/160 (28%), Positives = 69/160 (43%), Gaps = 20/160 (12%)
Query: 108 TDVLNRERKDKYILHIKATITHRDGKKASYEETTCKVHVNVLDTNDLNPLFYPTEYEETV 167
T L+RE Y L+++ T GK E + V V+D ND P+F Y V
Sbjct: 63 TRTLDRETIATYQLYVETT--DASGKTL---EGPVPLEVIVIDQNDNRPIFREGPYIGHV 117
Query: 168 PEDLPLHTSILRVSAEDAD--LGRNGEIYYSFRDMN------EQFSIHPTSG-VVTLTRP 218
E P T+++R++A DAD N + Y+ R F I P G +VT+ P
Sbjct: 118 MEGSPTGTTVMRMTAFDADDPATDNALLRYNIRQQTPDKPSPNMFYIDPEKGDIVTVVSP 177
Query: 219 LKYTDRSV-----HDLVVLGQDRGSVFKGGGKPSSAKLKI 253
DR ++L++ QD + G ++A + I
Sbjct: 178 -ALLDRETLENPKYELIIEAQDMAGLDVGLTGTATATIVI 216
>pdb|3Q2L|A Chain A, Mouse E-Cadherin Ec1-2 V81d Mutant
pdb|3Q2L|B Chain B, Mouse E-Cadherin Ec1-2 V81d Mutant
Length = 213
Score = 67.4 bits (163), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 66/217 (30%), Positives = 103/217 (47%), Gaps = 25/217 (11%)
Query: 755 PIELQVNESVPLKSTLTKIIA-RDRDLGYNGKLVFGISSGDND----SVFRIDPDSGELK 809
PI NE L +I + RD++ K+ + I+ D VF I+ ++G LK
Sbjct: 6 PISCPENEKGEFPKNLVQIKSNRDKET----KVFYSITGQGADKPPVGVFIIERETGWLK 61
Query: 810 VVGYLDRERTSEYTLNITVYDLGKPQKSTSKM-LPITILDVNDNPPKFEKSLASFRVTEN 868
V LDRE ++Y L + D + M + IT+ D NDN P+F + + V E
Sbjct: 62 VTQPLDREAIAKYIL-YSHADSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAEG 120
Query: 869 ALNGTVIFKVNATDLD---LGDNAKVVYSLMTDTQD------FAVDSATGSLYV-SASLD 918
A+ GT + KV+ATD D NA + Y++++ + F V+ TG + V ++ LD
Sbjct: 121 AVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVLTSGLD 180
Query: 919 RERQDLYELKIRASDCDGRNDMYTLHADALVRVTIDD 955
RE Y L ++A+D G L A +T+ D
Sbjct: 181 RESYPTYTLVVQAADLQGEG----LSTTAKAVITVKD 213
Score = 61.2 bits (147), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 61/169 (36%), Positives = 79/169 (46%), Gaps = 16/169 (9%)
Query: 410 KNAQVFLEIVGGNEG----GEFNINPETGMLYTAVTLDAEDKAFYTLTVSAIDQGNAGTR 465
K +VF I G G F I ETG L LD E A Y L S D N G
Sbjct: 30 KETKVFYSITGQGADKPPVGVFIIERETGWLKVTQPLDREAIAKYIL-YSHADSSN-GEA 87
Query: 466 KQSAAKVKVNIVDTNDNDPLFDSPEMEVSINENEPAGTSVIKVTAKDKDSGENAY---IS 522
+ ++ + + D NDN P F E S+ E GTSV+KV+A D D N Y I+
Sbjct: 88 VEDPMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIA 147
Query: 523 YSIANLKP-VP----FEIDHFSGVIKT-TQVLDYESMRREYILRVRASD 565
Y+I + P +P F ++ +GVI T LD ES Y L V+A+D
Sbjct: 148 YTIVSQDPELPHKNMFTVNRDTGVISVLTSGLDRESYPT-YTLVVQAAD 195
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 57/185 (30%), Positives = 82/185 (44%), Gaps = 17/185 (9%)
Query: 890 KVVYSLMTDTQD------FAVDSATGSLYVSASLDRERQDLYELKIRASDCDGRNDMYTL 943
KV YS+ D F ++ TG L V+ LDRE Y L A +G +
Sbjct: 33 KVFYSITGQGADKPPVGVFIIERETGWLKVTQPLDREAIAKYILYSHADSSNGE----AV 88
Query: 944 HADALVRVTIDDINDNAPNFALPNYSVKVREDIPVGTVVAILSASDPD---LGQGGVVRY 1000
+ +T+ D NDN P F + V E GT V +SA+D D + Y
Sbjct: 89 EDPMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAY 148
Query: 1001 TIVSDNEA---DDVFSIDRLTGTIRV-AKPLDFEKRQVHSLVVRAKDNGSPPLYSEATLI 1056
TIVS + ++F+++R TG I V LD E ++LVV+A D L + A +
Sbjct: 149 TIVSQDPELPHKNMFTVNRDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGLSTTAKAV 208
Query: 1057 VEVSD 1061
+ V D
Sbjct: 209 ITVKD 213
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/171 (29%), Positives = 76/171 (44%), Gaps = 22/171 (12%)
Query: 99 LLIRTRTGN---TDVLNRERKDKYILHIKATITHRDGKKASYEETTCKVHVNVLDTNDLN 155
+I TG T L+RE KYIL+ +H D E ++ + V D ND
Sbjct: 51 FIIERETGWLKVTQPLDREAIAKYILY-----SHADSSNGEAVEDPMEIVITVTDQNDNR 105
Query: 156 PLFYPTEYEETVPEDLPLHTSILRVSAEDAD---LGRNGEIYYSFRDMNEQ------FSI 206
P F +E +V E TS+++VSA DAD N I Y+ + + F++
Sbjct: 106 PEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTV 165
Query: 207 HPTSGVVT-LTRPLKYTDRSVHDLVVLGQDRGSVFKGGGKPSSAKLKIKVE 256
+ +GV++ LT L + LVV D +G G ++AK I V+
Sbjct: 166 NRDTGVISVLTSGLDRESYPTYTLVVQAAD----LQGEGLSTTAKAVITVK 212
Score = 46.6 bits (109), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 55/116 (47%), Gaps = 8/116 (6%)
Query: 367 VHLVDLNDNKPVFDREIYEVDVPETTPVNTPIIRLKVSDADD---GKNAQVFLEIVGGN- 422
+ + D NDN+P F +E++E V E T ++++ +DADD NA + IV +
Sbjct: 96 ITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDP 155
Query: 423 ---EGGEFNINPETGMLYTAVT-LDAEDKAFYTLTVSAIDQGNAGTRKQSAAKVKV 474
F +N +TG++ + LD E YTL V A D G + A + V
Sbjct: 156 ELPHKNMFTVNRDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGLSTTAKAVITV 211
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 52/171 (30%), Positives = 82/171 (47%), Gaps = 17/171 (9%)
Query: 493 VSINENE----PAGTSVIKVTAKDKDSGENAYISYSIANLKPVP-FEIDHFSGVIKTTQV 547
+S ENE P IK + +DK++ I+ A+ PV F I+ +G +K TQ
Sbjct: 7 ISCPENEKGEFPKNLVQIK-SNRDKETKVFYSITGQGADKPPVGVFIIERETGWLKVTQP 65
Query: 548 LDYESMRREYILRVRASDWGLPYRRQTEMQLKIKLLDVNDNRPQFEKVDCLGHVPRNLPI 607
LD E++ + YIL A D + M++ I + D NDNRP+F + G V
Sbjct: 66 LDREAIAK-YILYSHA-DSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVP 123
Query: 608 GREIITLSAIDFD-----AGNIISYRIVSGNED----GCFALDITSGVLSI 649
G ++ +SA D D I+Y IVS + + F ++ +GV+S+
Sbjct: 124 GTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISV 174
Score = 40.0 bits (92), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 42/80 (52%), Gaps = 2/80 (2%)
Query: 1011 VFSIDRLTGTIRVAKPLDFEKRQVHSLVVRAKDNGSPPLYSEATLIVEVSDVNENMNAPV 1070
VF I+R TG ++V +PLD E + L A + + +++ V+D N+N P
Sbjct: 50 VFIIERETGWLKVTQPLDREAIAKYILYSHADSSNGEAVEDPMEIVITVTDQNDNR--PE 107
Query: 1071 FSDFVYQATVKENQPIGTSL 1090
F+ V++ +V E GTS+
Sbjct: 108 FTQEVFEGSVAEGAVPGTSV 127
>pdb|2EE0|A Chain A, Solution Structures Of The Ca Domain Of Human
Protocadherin 9
Length = 114
Score = 66.6 bits (161), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 41/111 (36%), Positives = 59/111 (53%), Gaps = 7/111 (6%)
Query: 373 NDNKPVFDREIYEVDVPETTPVNTPIIRLKVSDADDGKNAQ---VFLEIVGGNEGGEFNI 429
NDN+PVF EV +PE PV T +I+L +DAD G NA+ +F V F +
Sbjct: 8 NDNRPVFKEGQVEVHIPENAPVGTSVIQLHATDADIGSNAEIRYIFGAQVAPATKRLFAL 67
Query: 430 NPETGMLYTAVTLDAEDKAFYTLTVSAIDQGNAGTRKQSAAKVKVNIVDTN 480
N TG++ +LD E+ A + +TV A D G+ + A V +N+ D N
Sbjct: 68 NNTTGLITVQRSLDREETAIHKVTVLASD----GSSTPARATVTINVTDVN 114
Score = 65.9 bits (159), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 60/113 (53%), Gaps = 11/113 (9%)
Query: 152 NDLNPLFYPTEYEETVPEDLPLHTSILRVSAEDADLGRNGEIYYSFRDM-----NEQFSI 206
ND P+F + E +PE+ P+ TS++++ A DAD+G N EI Y F F++
Sbjct: 8 NDNRPVFKEGQVEVHIPENAPVGTSVIQLHATDADIGSNAEIRYIFGAQVAPATKRLFAL 67
Query: 207 HPTSGVVTLTRPLKYTDRSVHDLVVLGQDRGSVFKGGGKPSSAKLKIKVEQIN 259
+ T+G++T+ R L + ++H + VL D G P+ A + I V +N
Sbjct: 68 NNTTGLITVQRSLDREETAIHKVTVLASD------GSSTPARATVTINVTDVN 114
Score = 62.8 bits (151), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/109 (35%), Positives = 57/109 (52%), Gaps = 4/109 (3%)
Query: 957 NDNAPNFALPNYSVKVREDIPVGTVVAILSASDPDLGQGGVVRYTIVSD--NEADDVFSI 1014
NDN P F V + E+ PVGT V L A+D D+G +RY + +F++
Sbjct: 8 NDNRPVFKEGQVEVHIPENAPVGTSVIQLHATDADIGSNAEIRYIFGAQVAPATKRLFAL 67
Query: 1015 DRLTGTIRVAKPLDFEKRQVHSLVVRAKDNGSPPLYSEATLIVEVSDVN 1063
+ TG I V + LD E+ +H + V A D S P + AT+ + V+DVN
Sbjct: 68 NNTTGLITVQRSLDREETAIHKVTVLASDGSSTP--ARATVTINVTDVN 114
Score = 58.9 bits (141), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 59/113 (52%), Gaps = 11/113 (9%)
Query: 850 NDNPPKFEKSLASFRVTENALNGTVIFKVNATDLDLGDNAKVVYSLMTDTQD-----FAV 904
NDN P F++ + ENA GT + +++ATD D+G NA++ Y FA+
Sbjct: 8 NDNRPVFKEGQVEVHIPENAPVGTSVIQLHATDADIGSNAEIRYIFGAQVAPATKRLFAL 67
Query: 905 DSATGSLYVSASLDRERQDLYELKIRASDCDGRNDMYTLHADALVRVTIDDIN 957
++ TG + V SLDRE ++++ + ASD + A A V + + D+N
Sbjct: 68 NNTTGLITVQRSLDREETAIHKVTVLASDGS------STPARATVTINVTDVN 114
Score = 57.4 bits (137), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 42/111 (37%), Positives = 57/111 (51%), Gaps = 8/111 (7%)
Query: 480 NDNDPLFDSPEMEVSINENEPAGTSVIKVTAKDKDSGENAYISYSI-ANLKPVP---FEI 535
NDN P+F ++EV I EN P GTSVI++ A D D G NA I Y A + P F +
Sbjct: 8 NDNRPVFKEGQVEVHIPENAPVGTSVIQLHATDADIGSNAEIRYIFGAQVAPATKRLFAL 67
Query: 536 DHFSGVIKTTQVLDYESMRREYILRVRASDWGLPYRRQTEMQLKIKLLDVN 586
++ +G+I + LD E + V ASD R T + I + DVN
Sbjct: 68 NNTTGLITVQRSLDREETAIHKVT-VLASDGSSTPARAT---VTINVTDVN 114
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 50/103 (48%), Gaps = 5/103 (4%)
Query: 586 NDNRPQFEKVDCLGHVPRNLPIGREIITLSAIDFDAGNIISYRIVSGNEDG-----CFAL 640
NDNRP F++ H+P N P+G +I L A D D G+ R + G + FAL
Sbjct: 8 NDNRPVFKEGQVEVHIPENAPVGTSVIQLHATDADIGSNAEIRYIFGAQVAPATKRLFAL 67
Query: 641 DITSGVLSIACDLTDVRVNEREINVTATDSAHFSDVVRIRINL 683
+ T+G++++ L ++ V A+D + + IN+
Sbjct: 68 NNTTGLITVQRSLDREETAIHKVTVLASDGSSTPARATVTINV 110
Score = 38.5 bits (88), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 55/106 (51%), Gaps = 7/106 (6%)
Query: 749 PEFFSFPIELQVNESVPLKSTLTKIIARDRDLGYNGKL--VFGIS-SGDNDSVFRIDPDS 805
P F +E+ + E+ P+ +++ ++ A D D+G N ++ +FG + +F ++ +
Sbjct: 12 PVFKEGQVEVHIPENAPVGTSVIQLHATDADIGSNAEIRYIFGAQVAPATKRLFALNNTT 71
Query: 806 GELKVVGYLDRERTSEYTLNITVYD-LGKPQKSTSKMLPITILDVN 850
G + V LDRE T+ + + + D P ++T + I + DVN
Sbjct: 72 GLITVQRSLDREETAIHKVTVLASDGSSTPARAT---VTINVTDVN 114
>pdb|3QRB|A Chain A, Crystal Structure Of E-Cadherin Ec1-2 P5a P6a
pdb|3QRB|B Chain B, Crystal Structure Of E-Cadherin Ec1-2 P5a P6a
Length = 213
Score = 66.2 bits (160), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 55/169 (32%), Positives = 88/169 (52%), Gaps = 16/169 (9%)
Query: 798 VFRIDPDSGELKVVGYLDRERTSEYTL-NITVYDLGKPQKSTSKMLPITILDVNDNPPKF 856
VF I+ ++G LKV LDRE ++Y L + V G+ + +++ IT+ D NDN P+F
Sbjct: 50 VFIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIV-ITVTDQNDNRPEF 108
Query: 857 EKSLASFRVTENALNGTVIFKVNATDLD---LGDNAKVVYSLMTDTQD------FAVDSA 907
+ + V E A+ GT + KV+ATD D NA + Y++++ + F V+
Sbjct: 109 TQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRD 168
Query: 908 TGSLYV-SASLDRERQDLYELKIRASDCDGRNDMYTLHADALVRVTIDD 955
TG + V ++ LDRE Y L ++A+D G L A +T+ D
Sbjct: 169 TGVISVLTSGLDRESYPTYTLVVQAADLQGEG----LSTTAKAVITVKD 213
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 59/169 (34%), Positives = 78/169 (46%), Gaps = 16/169 (9%)
Query: 410 KNAQVFLEIVGGNEG----GEFNINPETGMLYTAVTLDAEDKAFYTLTVSAIDQGNAGTR 465
K +VF I G G F I ETG L LD E A Y L A+ G
Sbjct: 30 KETKVFYSITGQGADKPPVGVFIIERETGWLKVTQPLDREAIAKYILYSHAVSSN--GEA 87
Query: 466 KQSAAKVKVNIVDTNDNDPLFDSPEMEVSINENEPAGTSVIKVTAKDKDSGENAY---IS 522
+ ++ + + D NDN P F E S+ E GTSV+KV+A D D N Y I+
Sbjct: 88 VEDPMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIA 147
Query: 523 YSIANLKP-VP----FEIDHFSGVIKT-TQVLDYESMRREYILRVRASD 565
Y+I + P +P F ++ +GVI T LD ES Y L V+A+D
Sbjct: 148 YTIVSQDPELPHKNMFTVNRDTGVISVLTSGLDRESYPT-YTLVVQAAD 195
Score = 58.2 bits (139), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 57/185 (30%), Positives = 82/185 (44%), Gaps = 17/185 (9%)
Query: 890 KVVYSLMTDTQD------FAVDSATGSLYVSASLDRERQDLYELKIRASDCDGRNDMYTL 943
KV YS+ D F ++ TG L V+ LDRE Y L A +G +
Sbjct: 33 KVFYSITGQGADKPPVGVFIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGE----AV 88
Query: 944 HADALVRVTIDDINDNAPNFALPNYSVKVREDIPVGTVVAILSASDPD---LGQGGVVRY 1000
+ +T+ D NDN P F + V E GT V +SA+D D + Y
Sbjct: 89 EDPMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAY 148
Query: 1001 TIVSDNEA---DDVFSIDRLTGTIRV-AKPLDFEKRQVHSLVVRAKDNGSPPLYSEATLI 1056
TIVS + ++F+++R TG I V LD E ++LVV+A D L + A +
Sbjct: 149 TIVSQDPELPHKNMFTVNRDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGLSTTAKAV 208
Query: 1057 VEVSD 1061
+ V D
Sbjct: 209 ITVKD 213
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 46/151 (30%), Positives = 67/151 (44%), Gaps = 9/151 (5%)
Query: 332 VLKLLDREIAPLGYNLTLRAVDKGTPPRETYKATQVHLVDLNDNKPVFDREIYEVDVPET 391
V + LDRE A Y L AV E + + D NDN+P F +E++E V E
Sbjct: 62 VTQPLDRE-AIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAEG 120
Query: 392 TPVNTPIIRLKVSDADD---GKNAQVFLEIVGGN----EGGEFNINPETGMLYTAVT-LD 443
T ++++ +DADD NA + IV + F +N +TG++ + LD
Sbjct: 121 AVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVLTSGLD 180
Query: 444 AEDKAFYTLTVSAIDQGNAGTRKQSAAKVKV 474
E YTL V A D G + A + V
Sbjct: 181 RESYPTYTLVVQAADLQGEGLSTTAKAVITV 211
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/171 (28%), Positives = 75/171 (43%), Gaps = 22/171 (12%)
Query: 99 LLIRTRTGNTDV---LNRERKDKYILHIKATITHRDGKKASYEETTCKVHVNVLDTNDLN 155
+I TG V L+RE KYIL+ +H E ++ + V D ND
Sbjct: 51 FIIERETGWLKVTQPLDREAIAKYILY-----SHAVSSNGEAVEDPMEIVITVTDQNDNR 105
Query: 156 PLFYPTEYEETVPEDLPLHTSILRVSAEDAD---LGRNGEIYYSFRDMNEQ------FSI 206
P F +E +V E TS+++VSA DAD N I Y+ + + F++
Sbjct: 106 PEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTV 165
Query: 207 HPTSGVVT-LTRPLKYTDRSVHDLVVLGQDRGSVFKGGGKPSSAKLKIKVE 256
+ +GV++ LT L + LVV D +G G ++AK I V+
Sbjct: 166 NRDTGVISVLTSGLDRESYPTYTLVVQAAD----LQGEGLSTTAKAVITVK 212
Score = 43.9 bits (102), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 53/172 (30%), Positives = 83/172 (48%), Gaps = 19/172 (11%)
Query: 493 VSINENE----PAGTSVIKVTAKDKDSGENAYISYSIANLKPVP-FEIDHFSGVIKTTQV 547
+S ENE P IK + +DK++ I+ A+ PV F I+ +G +K TQ
Sbjct: 7 ISCPENEKGEFPKNLVQIK-SNRDKETKVFYSITGQGADKPPVGVFIIERETGWLKVTQP 65
Query: 548 LDYESMRREYILRVRA-SDWGLPYRRQTEMQLKIKLLDVNDNRPQFEKVDCLGHVPRNLP 606
LD E++ + YIL A S G + M++ I + D NDNRP+F + G V
Sbjct: 66 LDREAIAK-YILYSHAVSSNGEAV--EDPMEIVITVTDQNDNRPEFTQEVFEGSVAEGAV 122
Query: 607 IGREIITLSAIDFD-----AGNIISYRIVSGNED----GCFALDITSGVLSI 649
G ++ +SA D D I+Y IVS + + F ++ +GV+S+
Sbjct: 123 PGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISV 174
Score = 39.7 bits (91), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 42/80 (52%), Gaps = 2/80 (2%)
Query: 1011 VFSIDRLTGTIRVAKPLDFEKRQVHSLVVRAKDNGSPPLYSEATLIVEVSDVNENMNAPV 1070
VF I+R TG ++V +PLD E + L A + + +++ V+D N+N P
Sbjct: 50 VFIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNR--PE 107
Query: 1071 FSDFVYQATVKENQPIGTSL 1090
F+ V++ +V E GTS+
Sbjct: 108 FTQEVFEGSVAEGAVPGTSV 127
>pdb|2YST|A Chain A, Solution Structure Of The Third Cadherin Domain From Human
Protocadherin 7
Length = 119
Score = 56.6 bits (135), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 55/114 (48%), Gaps = 4/114 (3%)
Query: 373 NDNKPVFDREIYEVDVPETTPVNTPIIRLKVSDADDGKNAQVFLEIVGGNEGGE--FNIN 430
NDN P F++ +YE D+ E + TPI++L+ +D D G N Q+ E ++
Sbjct: 8 NDNSPRFEKSVYEADLAENSAPGTPILQLRAADLDVGVNGQIEYVFGAATESVRRLLRLD 67
Query: 431 PETGMLYTAVTLDAEDKAFYTLTVSAIDQGNAGTRKQSAAKVKVNIVDTNDNDP 484
+G L +D E+ TV A D+G K A V +NI D NDN P
Sbjct: 68 ETSGWLSVLHRIDREEVNQLRFTVMARDRGQPP--KTDKATVVLNIKDENDNVP 119
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 56/111 (50%), Gaps = 1/111 (0%)
Query: 957 NDNAPNFALPNYSVKVREDIPVGTVVAILSASDPDLGQGGVVRYTIVSDNEA-DDVFSID 1015
NDN+P F Y + E+ GT + L A+D D+G G + Y + E+ + +D
Sbjct: 8 NDNSPRFEKSVYEADLAENSAPGTPILQLRAADLDVGVNGQIEYVFGAATESVRRLLRLD 67
Query: 1016 RLTGTIRVAKPLDFEKRQVHSLVVRAKDNGSPPLYSEATLIVEVSDVNENM 1066
+G + V +D E+ V A+D G PP +AT+++ + D N+N+
Sbjct: 68 ETSGWLSVLHRIDREEVNQLRFTVMARDRGQPPKTDKATVVLNIKDENDNV 118
Score = 53.5 bits (127), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 54/116 (46%), Gaps = 8/116 (6%)
Query: 850 NDNPPKFEKSLASFRVTENALNGTVIFKVNATDLDLGDNAKVVYSLMTDTQD----FAVD 905
NDN P+FEKS+ + EN+ GT I ++ A DLD+G N ++ Y T+ +D
Sbjct: 8 NDNSPRFEKSVYEADLAENSAPGTPILQLRAADLDVGVNGQIEYVFGAATESVRRLLRLD 67
Query: 906 SATGSLYVSASLDRERQDLYELKIRASDCDGRNDMYTLHADALVRVTIDDINDNAP 961
+G L V +DRE + + A D A V + I D NDN P
Sbjct: 68 ETSGWLSVLHRIDREEVNQLRFTVMARD----RGQPPKTDKATVVLNIKDENDNVP 119
Score = 53.1 bits (126), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 56/112 (50%), Gaps = 2/112 (1%)
Query: 745 NVHVPEFFSFPIELQVNESVPLKSTLTKIIARDRDLGYNGKL--VFGISSGDNDSVFRID 802
N + P F E + E+ + + ++ A D D+G NG++ VFG ++ + R+D
Sbjct: 8 NDNSPRFEKSVYEADLAENSAPGTPILQLRAADLDVGVNGQIEYVFGAATESVRRLLRLD 67
Query: 803 PDSGELKVVGYLDRERTSEYTLNITVYDLGKPQKSTSKMLPITILDVNDNPP 854
SG L V+ +DRE ++ + D G+P K+ + + I D NDN P
Sbjct: 68 ETSGWLSVLHRIDREEVNQLRFTVMARDRGQPPKTDKATVVLNIKDENDNVP 119
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 52/119 (43%), Gaps = 15/119 (12%)
Query: 480 NDNDPLFDSPEMEVSINENEPAGTSVIKVTAKDKDSGENAYISY-------SIANLKPVP 532
NDN P F+ E + EN GT ++++ A D D G N I Y S+ L
Sbjct: 8 NDNSPRFEKSVYEADLAENSAPGTPILQLRAADLDVGVNGQIEYVFGAATESVRRL---- 63
Query: 533 FEIDHFSGVIKTTQVLDYESMRREYILRVRASDWGLPYRR-QTEMQLKIKLLDVNDNRP 590
+D SG + +D E + + V A D G P + + + L IK D NDN P
Sbjct: 64 LRLDETSGWLSVLHRIDREEV-NQLRFTVMARDRGQPPKTDKATVVLNIK--DENDNVP 119
Score = 40.4 bits (93), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 44/91 (48%), Gaps = 4/91 (4%)
Query: 152 NDLNPLFYPTEYEETVPEDLPLHTSILRVSAEDADLGRNGEIYYSFRDMNEQ----FSIH 207
ND +P F + YE + E+ T IL++ A D D+G NG+I Y F E +
Sbjct: 8 NDNSPRFEKSVYEADLAENSAPGTPILQLRAADLDVGVNGQIEYVFGAATESVRRLLRLD 67
Query: 208 PTSGVVTLTRPLKYTDRSVHDLVVLGQDRGS 238
TSG +++ + + + V+ +DRG
Sbjct: 68 ETSGWLSVLHRIDREEVNQLRFTVMARDRGQ 98
Score = 36.6 bits (83), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 37/91 (40%), Gaps = 4/91 (4%)
Query: 586 NDNRPQFEKVDCLGHVPRNLPIGREIITLSAIDFDAG--NIISYRIVSGNED--GCFALD 641
NDN P+FEK + N G I+ L A D D G I Y + E LD
Sbjct: 8 NDNSPRFEKSVYEADLAENSAPGTPILQLRAADLDVGVNGQIEYVFGAATESVRRLLRLD 67
Query: 642 ITSGVLSIACDLTDVRVNEREINVTATDSAH 672
TSG LS+ + VN+ V A D
Sbjct: 68 ETSGWLSVLHRIDREEVNQLRFTVMARDRGQ 98
>pdb|2WBX|A Chain A, Crystal Structure Of Mouse Cadherin-23 Ec1
Length = 102
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 47/77 (61%), Gaps = 3/77 (3%)
Query: 754 FPIELQVNESVPLKSTLTKIIARDRDLGYNGKLVFGISSGDNDSVFRIDPDSGELKVVGY 813
F L ++E P+ S++T+++ARD D N LVFG+S + F ++PD+G + +
Sbjct: 14 FDTYLLISEDTPVGSSVTQLLARDMD---NDPLVFGVSGEEASRFFAVEPDTGVVWLRQP 70
Query: 814 LDRERTSEYTLNITVYD 830
LDRE SE+T+ +V D
Sbjct: 71 LDRETKSEFTVEFSVSD 87
Score = 36.6 bits (83), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 42/92 (45%), Gaps = 5/92 (5%)
Query: 377 PVFDREIYE--VDVPETTPVNTPIIRLKVSDADDGKNAQVFLEIVGGNEGGEFNINPETG 434
P F ++ + + E TPV + + +L D D N + + G F + P+TG
Sbjct: 7 PFFTNHFFDTYLLISEDTPVGSSVTQLLARDMD---NDPLVFGVSGEEASRFFAVEPDTG 63
Query: 435 MLYTAVTLDAEDKAFYTLTVSAIDQGNAGTRK 466
+++ LD E K+ +T+ S D TRK
Sbjct: 64 VVWLRQPLDRETKSEFTVEFSVSDHQGVITRK 95
Score = 30.0 bits (66), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 14/76 (18%)
Query: 158 FYPTEYEET---VPEDLPLHTSILRVSAEDAD-----LGRNGEIYYSFRDMNEQFSIHPT 209
F+ + +T + ED P+ +S+ ++ A D D G +GE F F++ P
Sbjct: 8 FFTNHFFDTYLLISEDTPVGSSVTQLLARDMDNDPLVFGVSGEEASRF------FAVEPD 61
Query: 210 SGVVTLTRPLKYTDRS 225
+GVV L +PL +S
Sbjct: 62 TGVVWLRQPLDRETKS 77
Score = 30.0 bits (66), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 36/76 (47%), Gaps = 10/76 (13%)
Query: 972 VREDIPVGTVVAILSASDPD---LGQGGVVRYTIVSDNEADDVFSIDRLTGTIRVAKPLD 1028
+ ED PVG+ V L A D D L G VS EA F+++ TG + + +PLD
Sbjct: 20 ISEDTPVGSSVTQLLARDMDNDPLVFG-------VSGEEASRFFAVEPDTGVVWLRQPLD 72
Query: 1029 FEKRQVHSLVVRAKDN 1044
E + ++ D+
Sbjct: 73 RETKSEFTVEFSVSDH 88
>pdb|1SUH|A Chain A, Amino-Terminal Domain Of Epithelial Cadherin In The
Calcium Bound State, Nmr, 20 Structures
Length = 146
Score = 54.3 bits (129), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 45/136 (33%), Positives = 70/136 (51%), Gaps = 11/136 (8%)
Query: 755 PIELQVNESVPLKSTLTKIIA-RDRDLGYNGKLVFGISSGDND----SVFRIDPDSGELK 809
PI NE L +I + RD++ K+ + I+ D VF I+ ++G LK
Sbjct: 8 PISCPENEKGEFPKNLVQIKSNRDKET----KVFYSITGQGADKPPVGVFIIERETGWLK 63
Query: 810 VVGYLDRERTSEYTL-NITVYDLGKPQKSTSKMLPITILDVNDNPPKFEKSLASFRVTEN 868
V LDRE ++Y L + V G+ + +++ IT+ D NDN P+F + + V E
Sbjct: 64 VTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIV-ITVTDQNDNRPEFTQEVFEGSVAEG 122
Query: 869 ALNGTVIFKVNATDLD 884
A+ GT + KV+ATD D
Sbjct: 123 AVPGTSVMKVSATDAD 138
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/115 (34%), Positives = 50/115 (43%), Gaps = 6/115 (5%)
Query: 410 KNAQVFLEIVGGNEG----GEFNINPETGMLYTAVTLDAEDKAFYTLTVSAIDQGNAGTR 465
K +VF I G G F I ETG L LD E A Y L A+ G
Sbjct: 32 KETKVFYSITGQGADKPPVGVFIIERETGWLKVTQPLDREAIAKYILYSHAVSSN--GEA 89
Query: 466 KQSAAKVKVNIVDTNDNDPLFDSPEMEVSINENEPAGTSVIKVTAKDKDSGENAY 520
+ ++ + + D NDN P F E S+ E GTSV+KV+A D D N Y
Sbjct: 90 VEDPMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTY 144
Score = 40.4 bits (93), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 46/108 (42%), Gaps = 10/108 (9%)
Query: 890 KVVYSLMTDTQD------FAVDSATGSLYVSASLDRERQDLYELKIRASDCDGRNDMYTL 943
KV YS+ D F ++ TG L V+ LDRE Y L A +G +
Sbjct: 35 KVFYSITGQGADKPPVGVFIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGE----AV 90
Query: 944 HADALVRVTIDDINDNAPNFALPNYSVKVREDIPVGTVVAILSASDPD 991
+ +T+ D NDN P F + V E GT V +SA+D D
Sbjct: 91 EDPMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDAD 138
Score = 40.4 bits (93), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 44/134 (32%), Positives = 66/134 (49%), Gaps = 10/134 (7%)
Query: 493 VSINENE----PAGTSVIKVTAKDKDSGENAYISYSIANLKPVP-FEIDHFSGVIKTTQV 547
+S ENE P IK + +DK++ I+ A+ PV F I+ +G +K TQ
Sbjct: 9 ISCPENEKGEFPKNLVQIK-SNRDKETKVFYSITGQGADKPPVGVFIIERETGWLKVTQP 67
Query: 548 LDYESMRREYILRVRA-SDWGLPYRRQTEMQLKIKLLDVNDNRPQFEKVDCLGHVPRNLP 606
LD E++ + YIL A S G + M++ I + D NDNRP+F + G V
Sbjct: 68 LDREAIAK-YILYSHAVSSNGEAV--EDPMEIVITVTDQNDNRPEFTQEVFEGSVAEGAV 124
Query: 607 IGREIITLSAIDFD 620
G ++ +SA D D
Sbjct: 125 PGTSVMKVSATDAD 138
Score = 39.3 bits (90), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 42/80 (52%), Gaps = 2/80 (2%)
Query: 1011 VFSIDRLTGTIRVAKPLDFEKRQVHSLVVRAKDNGSPPLYSEATLIVEVSDVNENMNAPV 1070
VF I+R TG ++V +PLD E + L A + + +++ V+D N+N P
Sbjct: 52 VFIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNR--PE 109
Query: 1071 FSDFVYQATVKENQPIGTSL 1090
F+ V++ +V E GTS+
Sbjct: 110 FTQEVFEGSVAEGAVPGTSV 129
Score = 38.9 bits (89), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 42/91 (46%), Gaps = 8/91 (8%)
Query: 99 LLIRTRTGN---TDVLNRERKDKYILHIKATITHRDGKKASYEETTCKVHVNVLDTNDLN 155
+I TG T L+RE KYIL+ +H E ++ + V D ND
Sbjct: 53 FIIERETGWLKVTQPLDREAIAKYILY-----SHAVSSNGEAVEDPMEIVITVTDQNDNR 107
Query: 156 PLFYPTEYEETVPEDLPLHTSILRVSAEDAD 186
P F +E +V E TS+++VSA DAD
Sbjct: 108 PEFTQEVFEGSVAEGAVPGTSVMKVSATDAD 138
Score = 38.1 bits (87), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 39/80 (48%), Gaps = 1/80 (1%)
Query: 332 VLKLLDREIAPLGYNLTLRAVDKGTPPRETYKATQVHLVDLNDNKPVFDREIYEVDVPET 391
V + LDRE A Y L AV E + + D NDN+P F +E++E V E
Sbjct: 64 VTQPLDRE-AIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAEG 122
Query: 392 TPVNTPIIRLKVSDADDGKN 411
T ++++ +DADD N
Sbjct: 123 AVPGTSVMKVSATDADDDVN 142
>pdb|4APX|B Chain B, Crystal Structure Of Mouse Cadherin-23 Ec1-2 And
Protocadherin-15 Ec1-2 Form I
pdb|4AQ8|C Chain C, Crystal Structure Of Mouse Cadherin-23 Ec1-2 And
Protocadherin-15 Ec1-2 Form Ii
pdb|4AQ8|D Chain D, Crystal Structure Of Mouse Cadherin-23 Ec1-2 And
Protocadherin-15 Ec1-2 Form Ii
pdb|4AQA|B Chain B, Crystal Structure Of Deafness Associated Mutant Mouse
Cadherin-23 Ec1-2d124g And Protocadherin-15 Ec1-2 Form I
pdb|4AQE|B Chain B, Crystal Structure Of Deafness Associated Mutant Mouse
Cadherin-23 Ec1-2s70p And Protocadherin-15 Ec1-2 Form I
pdb|4AXW|B Chain B, Crystal Structure Of Mouse Cadherin-23 Ec1-2 And
Protocadherin-15 Ec1-2, Form I 2.2a
Length = 242
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 54/104 (51%), Gaps = 9/104 (8%)
Query: 949 VRVTIDDINDNAPNFALPNYSVKVREDIPVGTVVAIL-----SASDPDLGQGGVVRYTIV 1003
VR+ + D NDN+P F +Y V E PVGT + A+D D G G + Y I
Sbjct: 113 VRIVVRDRNDNSPTFKHESYYATVNELTPVGTTIFTGFSGDNGATDIDDGPNGQIEYVIQ 172
Query: 1004 SDNE---ADDVFSID-RLTGTIRVAKPLDFEKRQVHSLVVRAKD 1043
+ E ++D F I LTG + + K L++E + + ++++A D
Sbjct: 173 YNPEDPTSNDTFEIPLMLTGNVVLRKRLNYEDKTRYYVIIQAND 216
Score = 39.7 bits (91), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 53/126 (42%), Gaps = 11/126 (8%)
Query: 362 YKATQVHLVDLNDNKPVFDREIYEVDVPETTPVNTPIIRL-----KVSDADDGKNAQVFL 416
Y ++ + D NDN P F E Y V E TPV T I +D DDG N Q+
Sbjct: 110 YHEVRIVVRDRNDNSPTFKHESYYATVNELTPVGTTIFTGFSGDNGATDIDDGPNGQIEY 169
Query: 417 EIVGGNEGGEFNINPETGMLYTAVT-----LDAEDKAFYTLTVSAIDQG-NAGTRKQSAA 470
I E N E ++ T L+ EDK Y + + A D+ N R+ +
Sbjct: 170 VIQYNPEDPTSNDTFEIPLMLTGNVVLRKRLNYEDKTRYYVIIQANDRAQNLNERRTTTT 229
Query: 471 KVKVNI 476
+ V++
Sbjct: 230 TLTVDL 235
Score = 39.3 bits (90), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 48/106 (45%), Gaps = 12/106 (11%)
Query: 471 KVKVNIVDTNDNDPLFDSPEMEVSINENEPAGTSVIKV-----TAKDKDSGENAYISYSI 525
+V++ + D NDN P F ++NE P GT++ A D D G N I Y I
Sbjct: 112 EVRIVVRDRNDNSPTFKHESYYATVNELTPVGTTIFTGFSGDNGATDIDDGPNGQIEYVI 171
Query: 526 ANLKPVPFEIDHF------SGVIKTTQVLDYESMRREYILRVRASD 565
P D F +G + + L+YE R Y++ ++A+D
Sbjct: 172 QYNPEDPTSNDTFEIPLMLTGNVVLRKRLNYEDKTRYYVI-IQAND 216
Score = 37.4 bits (85), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 49/108 (45%), Gaps = 12/108 (11%)
Query: 143 KVHVNVLDTNDLNPLFYPTEYEETVPEDLPLHTSILRV-----SAEDADLGRNGEIYYSF 197
+V + V D ND +P F Y TV E P+ T+I A D D G NG+I Y
Sbjct: 112 EVRIVVRDRNDNSPTFKHESYYATVNELTPVGTTIFTGFSGDNGATDIDDGPNGQIEYVI 171
Query: 198 R------DMNEQFSIHPT-SGVVTLTRPLKYTDRSVHDLVVLGQDRGS 238
+ N+ F I +G V L + L Y D++ + +++ DR
Sbjct: 172 QYNPEDPTSNDTFEIPLMLTGNVVLRKRLNYEDKTRYYVIIQANDRAQ 219
Score = 34.7 bits (78), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 49/104 (47%), Gaps = 16/104 (15%)
Query: 844 ITILDVNDNPPKFEKSLASFRVTENALN--GTVIFKV-----NATDLDLGDNAKVVYSLM 896
I + D NDN P F+ S+ T N L GT IF ATD+D G N ++ Y +
Sbjct: 115 IVVRDRNDNSPTFKHE--SYYATVNELTPVGTTIFTGFSGDNGATDIDDGPNGQIEYVIQ 172
Query: 897 TDTQDFAVDSA-------TGSLYVSASLDRERQDLYELKIRASD 933
+ +D + TG++ + L+ E + Y + I+A+D
Sbjct: 173 YNPEDPTSNDTFEIPLMLTGNVVLRKRLNYEDKTRYYVIIQAND 216
Score = 31.2 bits (69), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 7/60 (11%)
Query: 1034 VHSLVVRAK---DNGSPPLYSEATLIVEVSDVNENMNAPVFSDFVYQATVKENQPIGTSL 1090
+HS+VV+ + +Y E ++V + N N+P F Y ATV E P+GT++
Sbjct: 91 IHSIVVQVQCVNKKVGTVIYHEVRIVVR----DRNDNSPTFKHESYYATVNELTPVGTTI 146
>pdb|1NCH|A Chain A, Structural Basis Of Cell-Cell Adhesion By Cadherins
pdb|1NCH|B Chain B, Structural Basis Of Cell-Cell Adhesion By Cadherins
pdb|1NCI|A Chain A, Structural Basis Of Cell-Cell Adhesion By Cadherins
pdb|1NCI|B Chain B, Structural Basis Of Cell-Cell Adhesion By Cadherins
pdb|1NCG|A Chain A, Structural Basis Of Cell-Cell Adhesion By Cadherins
Length = 110
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 47/103 (45%), Gaps = 1/103 (0%)
Query: 755 PIELQVNESVPLKSTLTKI-IARDRDLGYNGKLVFGISSGDNDSVFRIDPDSGELKVVGY 813
PI L N P L +I RD++L + + +F I+P SG+L V
Sbjct: 8 PINLPENSRGPFPQELVRIRSGRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKP 67
Query: 814 LDRERTSEYTLNITVYDLGKPQKSTSKMLPITILDVNDNPPKF 856
LDRE + + L D+ Q + I ++D+NDN P+F
Sbjct: 68 LDRELIARFHLRAHAVDINGNQVENPIDIVINVIDMNDNRPEF 110
Score = 38.1 bits (87), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Query: 425 GEFNINPETGMLYTAVTLDAEDKAFYTLTVSAIDQGNAGTRKQSAAKVKVNIVDTNDNDP 484
G F INP +G L LD E A + L A+D G + ++ + +N++D NDN P
Sbjct: 51 GIFIINPISGQLSVTKPLDRELIARFHLRAHAVDIN--GNQVENPIDIVINVIDMNDNRP 108
Query: 485 LF 486
F
Sbjct: 109 EF 110
Score = 33.9 bits (76), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 53/106 (50%), Gaps = 4/106 (3%)
Query: 489 PEMEVSINENEPAGTSVIKV-TAKDKDSGENAYISYSIANLKPVP-FEIDHFSGVIKTTQ 546
P + + N P ++++ + +DK+ ++ A+ P F I+ SG + T+
Sbjct: 7 PPINLPENSRGPFPQELVRIRSGRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTK 66
Query: 547 VLDYESMRREYILRVRASDWGLPYRRQTEMQLKIKLLDVNDNRPQF 592
LD E + R + LR A D + + + + I ++D+NDNRP+F
Sbjct: 67 PLDRELIAR-FHLRAHAVDING-NQVENPIDIVINVIDMNDNRPEF 110
Score = 30.0 bits (66), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 42/88 (47%), Gaps = 7/88 (7%)
Query: 981 VVAILSASDPDLGQGGVVRYTIV---SDNEADDVFSIDRLTGTIRVAKPLDFEKRQVHSL 1037
+V I S D +L +RY++ +D +F I+ ++G + V KPLD E L
Sbjct: 23 LVRIRSGRDKNLS----LRYSVTGPGADQPPTGIFIINPISGQLSVTKPLDRELIARFHL 78
Query: 1038 VVRAKDNGSPPLYSEATLIVEVSDVNEN 1065
A D + + +++ V D+N+N
Sbjct: 79 RAHAVDINGNQVENPIDIVINVIDMNDN 106
>pdb|2YQG|A Chain A, Solution Structure Of The First Cadherin Domain From Human
Desmoglein-2
Length = 123
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 52/117 (44%), Gaps = 19/117 (16%)
Query: 751 FFSFPIELQVNESVPLKSTLTKI---IARDRDLG----YNGKLV----FGISSGDNDSVF 799
+ + P+ L+ E + K+ + KI +A +R L Y GK + FGI F
Sbjct: 12 WITAPVALREGEDLSKKNPIAKIHSDLAEERGLKITYKYTGKGITEPPFGI--------F 63
Query: 800 RIDPDSGELKVVGYLDRERTSEYTLNITVYDLGKPQKSTSKMLPITILDVNDNPPKF 856
+ D+GEL V LDRE T + L D L I +LD+NDN P F
Sbjct: 64 VFNKDTGELNVTSILDREETPFFLLTGYALDARGNNVEKPLELRIKVLDINDNEPVF 120
Score = 39.7 bits (91), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
Query: 425 GEFNINPETGMLYTAVTLDAEDKAFYTLTVSAIDQGNAGTRKQSAAKVKVNIVDTNDNDP 484
G F N +TG L LD E+ F+ LT A+D G + ++++ ++D NDN+P
Sbjct: 61 GIFVFNKDTGELNVTSILDREETPFFLLTGYALDA--RGNNVEKPLELRIKVLDINDNEP 118
Query: 485 LF 486
+F
Sbjct: 119 VF 120
Score = 36.2 bits (82), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 30/62 (48%), Gaps = 4/62 (6%)
Query: 902 FAVDSATGSLYVSASLDRERQDLYELKIRASDCDGRNDMYTLHADALVRVTIDDINDNAP 961
F + TG L V++ LDRE + L A D G N L +R+ + DINDN P
Sbjct: 63 FVFNKDTGELNVTSILDREETPFFLLTGYALDARGNNVEKPLE----LRIKVLDINDNEP 118
Query: 962 NF 963
F
Sbjct: 119 VF 120
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 37/77 (48%), Gaps = 13/77 (16%)
Query: 523 YSIANLKPVPFEIDHF---SGVIKTTQVLDYES----MRREYILRVRASDWGLPYRRQTE 575
Y+ + PF I F +G + T +LD E + Y L R ++ P
Sbjct: 50 YTGKGITEPPFGIFVFNKDTGELNVTSILDREETPFFLLTGYALDARGNNVEKP------ 103
Query: 576 MQLKIKLLDVNDNRPQF 592
++L+IK+LD+NDN P F
Sbjct: 104 LELRIKVLDINDNEPVF 120
>pdb|2OMX|B Chain B, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 108
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 54/104 (51%), Gaps = 11/104 (10%)
Query: 755 PIELQVNESVPLKSTLTKIIA-RDRDLGYNGKLVFGISSGDNDS----VFRIDPDSGELK 809
PI NE P L +I + +D++ GK+ + I+ D+ VF I+ ++G LK
Sbjct: 10 PISCPENEKGPFPKNLVQIKSNKDKE----GKVFYSITGQGADTPPVGVFIIERETGWLK 65
Query: 810 VVGYLDRERTSEYTL-NITVYDLGKPQKSTSKMLPITILDVNDN 852
V LDRER + YTL + V G + ++L IT+ D NDN
Sbjct: 66 VTEPLDRERIATYTLFSHAVSSNGNAVEDPMEIL-ITVTDQNDN 108
Score = 35.0 bits (79), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 3/73 (4%)
Query: 996 GVVRYTIV---SDNEADDVFSIDRLTGTIRVAKPLDFEKRQVHSLVVRAKDNGSPPLYSE 1052
G V Y+I +D VF I+R TG ++V +PLD E+ ++L A + +
Sbjct: 36 GKVFYSITGQGADTPPVGVFIIERETGWLKVTEPLDRERIATYTLFSHAVSSNGNAVEDP 95
Query: 1053 ATLIVEVSDVNEN 1065
+++ V+D N+N
Sbjct: 96 MEILITVTDQNDN 108
Score = 32.0 bits (71), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 41/97 (42%), Gaps = 9/97 (9%)
Query: 390 ETTPVNTPIIRLKVSDADDGKNAQVFLEIVGGNEG----GEFNINPETGMLYTAVTLDAE 445
E P ++++K + +GK VF I G G F I ETG L LD E
Sbjct: 17 EKGPFPKNLVQIKSNKDKEGK---VFYSITGQGADTPPVGVFIIERETGWLKVTEPLDRE 73
Query: 446 DKAFYTLTVSAIDQGNAGTRKQSAAKVKVNIVDTNDN 482
A YTL A+ G + ++ + + D NDN
Sbjct: 74 RIATYTLFSHAVSSN--GNAVEDPMEILITVTDQNDN 108
>pdb|3FF7|A Chain A, Structure Of Nk Cell Receptor Klrg1 Bound To E-Cadherin
pdb|3FF7|B Chain B, Structure Of Nk Cell Receptor Klrg1 Bound To E-Cadherin
Length = 100
Score = 40.4 bits (93), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 41/75 (54%), Gaps = 9/75 (12%)
Query: 755 PIELQVNESVPLKSTLTKIIA-RDRDLGYNGKLVFGISSGDNDS----VFRIDPDSGELK 809
PI L NE P L +I + +D++ GK+ + I+ D+ VF I+ ++G LK
Sbjct: 7 PISLPENEKGPFPKNLVQIKSNKDKE----GKVFYSITGQGADTPPVGVFIIERETGWLK 62
Query: 810 VVGYLDRERTSEYTL 824
V LDRER + YTL
Sbjct: 63 VTEPLDRERIATYTL 77
Score = 30.8 bits (68), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
Query: 996 GVVRYTIV---SDNEADDVFSIDRLTGTIRVAKPLDFEKRQVHSLVVRA 1041
G V Y+I +D VF I+R TG ++V +PLD E+ ++L A
Sbjct: 33 GKVFYSITGQGADTPPVGVFIIERETGWLKVTEPLDRERIATYTLFSHA 81
>pdb|3FF8|A Chain A, Structure Of Nk Cell Receptor Klrg1 Bound To E-Cadherin
pdb|3FF8|B Chain B, Structure Of Nk Cell Receptor Klrg1 Bound To E-Cadherin
Length = 101
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 41/75 (54%), Gaps = 9/75 (12%)
Query: 755 PIELQVNESVPLKSTLTKIIA-RDRDLGYNGKLVFGISSGDNDS----VFRIDPDSGELK 809
PI L NE P L +I + +D++ GK+ + I+ D+ VF I+ ++G LK
Sbjct: 7 PISLPENEKGPFPKNLVQIKSNKDKE----GKVFYSITGQGADTPPVGVFIIERETGWLK 62
Query: 810 VVGYLDRERTSEYTL 824
V LDRER + YTL
Sbjct: 63 VTEPLDRERIATYTL 77
Score = 31.2 bits (69), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 35/69 (50%), Gaps = 3/69 (4%)
Query: 996 GVVRYTIV---SDNEADDVFSIDRLTGTIRVAKPLDFEKRQVHSLVVRAKDNGSPPLYSE 1052
G V Y+I +D VF I+R TG ++V +PLD E+ ++L A + +
Sbjct: 33 GKVFYSITGQGADTPPVGVFIIERETGWLKVTEPLDRERIATYTLFSHAVSSNGNAVEDP 92
Query: 1053 ATLIVEVSD 1061
+++ V+D
Sbjct: 93 MEILITVTD 101
>pdb|2V37|A Chain A, Solution Structure Of The N-Terminal Extracellular Domain
Of Human T-Cadherin
Length = 105
Score = 39.3 bits (90), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 34/60 (56%), Gaps = 4/60 (6%)
Query: 902 FAVDSATGSLYVSASLDRERQDLYELKIRASDCDGRNDMYTLHADALVRVTIDDINDNAP 961
F ++ TGS+ V+ +LDRE +Y+L + +D +G+ TL + V + D NDN P
Sbjct: 50 FRINENTGSVSVTRTLDREVIAVYQLFVETTDVNGK----TLEGPVPLEVIVIDQNDNRP 105
Score = 37.0 bits (84), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 44/100 (44%)
Query: 755 PIELQVNESVPLKSTLTKIIARDRDLGYNGKLVFGISSGDNDSVFRIDPDSGELKVVGYL 814
PI + N+ P + K++ DR +L + +FRI+ ++G + V L
Sbjct: 6 PILIPENQRQPFPRDVGKVVDSDRPERSKFRLTGKGVDQEPKGIFRINENTGSVSVTRTL 65
Query: 815 DRERTSEYTLNITVYDLGKPQKSTSKMLPITILDVNDNPP 854
DRE + Y L + D+ L + ++D NDN P
Sbjct: 66 DREVIAVYQLFVETTDVNGKTLEGPVPLEVIVIDQNDNRP 105
Score = 34.3 bits (77), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 40/85 (47%), Gaps = 4/85 (4%)
Query: 402 KVSDADDGKNAQVFLEIVGGNE--GGEFNINPETGMLYTAVTLDAEDKAFYTLTVSAIDQ 459
KV D+D + ++ L G ++ G F IN TG + TLD E A Y L V D
Sbjct: 23 KVVDSDRPERSKFRLTGKGVDQEPKGIFRINENTGSVSVTRTLDREVIAVYQLFVETTDV 82
Query: 460 GNAGTRKQSAAKVKVNIVDTNDNDP 484
G + ++V ++D NDN P
Sbjct: 83 N--GKTLEGPVPLEVIVIDQNDNRP 105
Score = 30.0 bits (66), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 28/61 (45%)
Query: 1005 DNEADDVFSIDRLTGTIRVAKPLDFEKRQVHSLVVRAKDNGSPPLYSEATLIVEVSDVNE 1064
D E +F I+ TG++ V + LD E V+ L V D L L V V D N+
Sbjct: 43 DQEPKGIFRINENTGSVSVTRTLDREVIAVYQLFVETTDVNGKTLEGPVPLEVIVIDQND 102
Query: 1065 N 1065
N
Sbjct: 103 N 103
>pdb|1O6S|B Chain B, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|2OMV|B Chain B, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMY|B Chain B, Crystal Structure Of Inla S192n/hec1 Complex
pdb|2OMT|B Chain B, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
pdb|2OMU|B Chain B, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
pdb|2OMZ|B Chain B, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 105
Score = 38.5 bits (88), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 40/75 (53%), Gaps = 9/75 (12%)
Query: 755 PIELQVNESVPLKSTLTKIIA-RDRDLGYNGKLVFGISSGDNDS----VFRIDPDSGELK 809
PI NE P L +I + +D++ GK+ + I+ D+ VF I+ ++G LK
Sbjct: 10 PISCPENEKGPFPKNLVQIKSNKDKE----GKVFYSITGQGADTPPVGVFIIERETGWLK 65
Query: 810 VVGYLDRERTSEYTL 824
V LDRER + YTL
Sbjct: 66 VTEPLDRERIATYTL 80
Score = 31.2 bits (69), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 35/69 (50%), Gaps = 3/69 (4%)
Query: 996 GVVRYTIV---SDNEADDVFSIDRLTGTIRVAKPLDFEKRQVHSLVVRAKDNGSPPLYSE 1052
G V Y+I +D VF I+R TG ++V +PLD E+ ++L A + +
Sbjct: 36 GKVFYSITGQGADTPPVGVFIIERETGWLKVTEPLDRERIATYTLFSHAVSSNGNAVEDP 95
Query: 1053 ATLIVEVSD 1061
+++ V+D
Sbjct: 96 MEILITVTD 104
>pdb|3K6D|A Chain A, Crystal Structure Of Xenopus Laevis T-Cadherin Ec1
Length = 99
Score = 38.1 bits (87), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 35/75 (46%)
Query: 756 IELQVNESVPLKSTLTKIIARDRDLGYNGKLVFGISSGDNDSVFRIDPDSGELKVVGYLD 815
I + N+ +P + +++ DR G KL + +F+I+ +SGE+ V LD
Sbjct: 7 ISIPENQRIPFPKIVGRVVVSDRIPGSKIKLYGKGVDQEPKGIFKINENSGEVSVTKALD 66
Query: 816 RERTSEYTLNITVYD 830
RE Y L + D
Sbjct: 67 REAIPSYQLQVETTD 81
>pdb|1ZVN|A Chain A, Crystal Structure Of Chick Mn-Cadherin Ec1
pdb|1ZVN|B Chain B, Crystal Structure Of Chick Mn-Cadherin Ec1
Length = 99
Score = 37.7 bits (86), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 42/75 (56%), Gaps = 3/75 (4%)
Query: 988 SDPDLGQGGVVRYTIVSDNEADDVFSIDRLTGTIRVAKPLDFEKRQVHSLVVRAKDNGSP 1047
SD D G G + +Y I+S A VF+ID TG I + LD E+R ++L +A D +
Sbjct: 27 SDMDRGDGSI-KY-ILSGEGAGIVFTIDDTTGDIHAIQRLDREERSQYTLRAQALDRRTG 84
Query: 1048 -PLYSEATLIVEVSD 1061
P+ E+ I+++ D
Sbjct: 85 RPMEPESEFIIKIQD 99
Score = 33.5 bits (75), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 3/68 (4%)
Query: 777 DRDLGYNGKLVFGISSGDNDSVFRIDPDSGELKVVGYLDRERTSEYTLNITVYD--LGKP 834
D D G +G + + +S VF ID +G++ + LDRE S+YTL D G+P
Sbjct: 28 DMDRG-DGSIKYILSGEGAGIVFTIDDTTGDIHAIQRLDREERSQYTLRAQALDRRTGRP 86
Query: 835 QKSTSKML 842
+ S+ +
Sbjct: 87 MEPESEFI 94
Score = 30.0 bits (66), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 881 TDLDLGDNA-KVVYSLMTDTQDFAVDSATGSLYVSASLDRERQDLYELKIRASD 933
+D+D GD + K + S F +D TG ++ LDRE + Y L+ +A D
Sbjct: 27 SDMDRGDGSIKYILSGEGAGIVFTIDDTTGDIHAIQRLDREERSQYTLRAQALD 80
>pdb|3K6I|A Chain A, Crystal Structure Of Chicken T-Cadherin Ec1
Length = 99
Score = 37.4 bits (85), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 38/81 (46%)
Query: 751 FFSFPIELQVNESVPLKSTLTKIIARDRDLGYNGKLVFGISSGDNDSVFRIDPDSGELKV 810
+ PI + N+ P ++ K+I + G +L D +FRI+ SG++ V
Sbjct: 2 ILATPILIPENQRPPFPRSVGKVIRSEGTEGAKFRLSGKGVDQDPKGIFRINEISGDVSV 61
Query: 811 VGYLDRERTSEYTLNITVYDL 831
LDRE + Y L + V DL
Sbjct: 62 TRPLDREAIANYELEVEVTDL 82
>pdb|2X2U|A Chain A, First Two Cadherin-Like Domains From Human Ret
Length = 246
Score = 37.0 bits (84), Expect = 0.056, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 799 FRIDPDSGELKVVGYLDRERTSEYTL-NITVYDLGKPQKSTSKMLPITILDVNDNPPKFE 857
FR PDS E+ LDRE+ +Y L + G ++ P+T+ D +D+ P+FE
Sbjct: 186 FRSAPDSLEVSTRWALDREQREKYELVAVCTVHAGAREEVVMVPFPVTVYDEDDSAPEFE 245
>pdb|3K6F|A Chain A, Crystal Structure Of Mouse T-Cadherin Ec1
pdb|3K6F|B Chain B, Crystal Structure Of Mouse T-Cadherin Ec1
Length = 100
Score = 35.0 bits (79), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 34/76 (44%)
Query: 755 PIELQVNESVPLKSTLTKIIARDRDLGYNGKLVFGISSGDNDSVFRIDPDSGELKVVGYL 814
PI + N+ P + K++ DR G +L D FRI+ ++G + V L
Sbjct: 7 PILIPENQRQPFPRDVGKVVDSDRPEGSKFRLTGKGVDQDPKGTFRINENTGSVSVTRTL 66
Query: 815 DRERTSEYTLNITVYD 830
DRE + Y L + D
Sbjct: 67 DRETIATYQLYVETTD 82
Score = 31.2 bits (69), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 22/37 (59%)
Query: 902 FAVDSATGSLYVSASLDRERQDLYELKIRASDCDGRN 938
F ++ TGS+ V+ +LDRE Y+L + +D G+
Sbjct: 51 FRINENTGSVSVTRTLDRETIATYQLYVETTDASGKT 87
>pdb|1DQV|A Chain A, Crystal Structure Of Synaptotagmin Iii C2aC2B
Length = 296
Score = 34.7 bits (78), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 62/156 (39%), Gaps = 26/156 (16%)
Query: 168 PEDLPLHTSILRVSAEDADLGRNGEIYYSFRDMNEQFSIHPTSGVVTLTRPLKYTDRSVH 227
P D PL IL +E ADLG ++N PT+G++T+T +K ++
Sbjct: 119 PPDRPLWRDILEGGSEKADLG----------ELNFSLCYLPTAGLLTVTI-IKASNLKAM 167
Query: 228 DLVVLGQD--RGSVFKGGGKPSSAKLKIKVEQINLYGPEIYVQSLPDIVEQSYADIYAIV 285
DL + S+ G + K IK +N P + D+ +S ++ +
Sbjct: 168 DLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLN---PTYNEALVFDVAPESVENVGLSI 224
Query: 286 RVVDRDAGIHGEIASLDIVDGDPDGHFRIVPTKIDP 321
VVD D H E+ G R+ P DP
Sbjct: 225 AVVDYDCIGHNEVI----------GVCRVGPEAADP 250
>pdb|3HN8|A Chain A, Crystal Structure Of Synaptotagmin
pdb|3HN8|B Chain B, Crystal Structure Of Synaptotagmin
pdb|3HN8|C Chain C, Crystal Structure Of Synaptotagmin
Length = 296
Score = 34.7 bits (78), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 62/156 (39%), Gaps = 26/156 (16%)
Query: 168 PEDLPLHTSILRVSAEDADLGRNGEIYYSFRDMNEQFSIHPTSGVVTLTRPLKYTDRSVH 227
P D PL IL +E ADLG ++N PT+G++T+T +K ++
Sbjct: 120 PPDRPLWRDILEGGSEKADLG----------ELNFSLCYLPTAGLLTVTI-IKASNLKAM 168
Query: 228 DLVVLGQD--RGSVFKGGGKPSSAKLKIKVEQINLYGPEIYVQSLPDIVEQSYADIYAIV 285
DL + S+ G + K IK +N P + D+ +S ++ +
Sbjct: 169 DLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLN---PTYNEALVFDVAPESVENVGLSI 225
Query: 286 RVVDRDAGIHGEIASLDIVDGDPDGHFRIVPTKIDP 321
VVD D H E+ G R+ P DP
Sbjct: 226 AVVDYDCIGHNEVI----------GVCRVGPEAADP 251
>pdb|1ZXK|A Chain A, Crystal Structure Of Cadherin8 Ec1 Domain
pdb|1ZXK|B Chain B, Crystal Structure Of Cadherin8 Ec1 Domain
Length = 98
Score = 33.9 bits (76), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 404 SDADDGKNAQVFLEIVGGNEGGEFNINPETGMLYTAVTLDAEDKAFYTLTVSAID 458
+D D G ++ + G G F IN TG ++ LD E+KA YTLT A+D
Sbjct: 26 TDLDPGSKKIKYI-LSGDGAGTIFQINDITGDIHAIKRLDREEKAEYTLTAQAVD 79
Score = 33.1 bits (74), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 35/67 (52%), Gaps = 3/67 (4%)
Query: 779 DLGYNGKLVFGISSGDN-DSVFRIDPDSGELKVVGYLDRERTSEYTLNITVYDL--GKPQ 835
DL K + I SGD ++F+I+ +G++ + LDRE +EYTL D KP
Sbjct: 27 DLDPGSKKIKYILSGDGAGTIFQINDITGDIHAIKRLDREEKAEYTLTAQAVDFETNKPL 86
Query: 836 KSTSKML 842
+ S+ +
Sbjct: 87 EPPSEFI 93
>pdb|2A4C|A Chain A, Crystal Structure Of Mouse Cadherin-11 Ec1
pdb|2A4C|B Chain B, Crystal Structure Of Mouse Cadherin-11 Ec1
Length = 99
Score = 32.0 bits (71), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 404 SDADDGKNAQVFLEIVGGNEGGEFNINPETGMLYTAVTLDAEDKAFYTLTVSAIDQ 459
SD D G ++ + G G F I+ ++G ++ TLD E++A YTL A+D+
Sbjct: 27 SDIDSGDGNIKYI-LSGEGAGTIFVIDDKSGNIHATKTLDREERAQYTLMAQAVDR 81
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.135 0.383
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33,237,146
Number of Sequences: 62578
Number of extensions: 1510517
Number of successful extensions: 3957
Number of sequences better than 100.0: 57
Number of HSP's better than 100.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 3375
Number of HSP's gapped (non-prelim): 316
length of query: 1095
length of database: 14,973,337
effective HSP length: 109
effective length of query: 986
effective length of database: 8,152,335
effective search space: 8038202310
effective search space used: 8038202310
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (26.6 bits)