RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy1041
(1095 letters)
>gnl|CDD|206637 cd11304, Cadherin_repeat, Cadherin tandem repeat domain. Cadherins
are glycoproteins involved in Ca2+-mediated cell-cell
adhesion. The cadherin repeat domains occur as tandem
repeats in the extracellular regions, which are thought
to mediate cell-cell contact when bound to calcium. They
play numerous roles in cell fate, signalling,
proliferation, differentiation, and migration; members
include E-, N-, P-, T-, VE-, CNR-, proto-, and FAT-family
cadherin, desmocollin, and desmoglein, a large variety of
domain architectures with varying repeat copy numbers.
Cadherin-repeat containing proteins exist as monomers,
homodimers, or heterodimers.
Length = 98
Score = 123 bits (312), Expect = 2e-33
Identities = 53/98 (54%), Positives = 66/98 (67%), Gaps = 1/98 (1%)
Query: 968 YSVKVREDIPVGTVVAILSASDPDLGQGGVVRYTIVSDNEADDVFSIDRLTGTIRVAKPL 1027
Y V V E+ P GTVV +SA+DPD G+ G V Y+IVS NE D +FSID TG I AKPL
Sbjct: 2 YEVSVPENAPPGTVVLTVSATDPDSGENGEVTYSIVSGNE-DGLFSIDPSTGEITTAKPL 60
Query: 1028 DFEKRQVHSLVVRAKDNGSPPLYSEATLIVEVSDVNEN 1065
D E++ ++L V A D G PPL S AT+ + V DVN+N
Sbjct: 61 DREEQSSYTLTVTATDGGGPPLSSTATVTITVLDVNDN 98
Score = 107 bits (270), Expect = 9e-28
Identities = 41/98 (41%), Positives = 58/98 (59%)
Query: 755 PIELQVNESVPLKSTLTKIIARDRDLGYNGKLVFGISSGDNDSVFRIDPDSGELKVVGYL 814
E+ V E+ P + + + A D D G NG++ + I SG+ D +F IDP +GE+ L
Sbjct: 1 SYEVSVPENAPPGTVVLTVSATDPDSGENGEVTYSIVSGNEDGLFSIDPSTGEITTAKPL 60
Query: 815 DRERTSEYTLNITVYDLGKPQKSTSKMLPITILDVNDN 852
DRE S YTL +T D G P S++ + IT+LDVNDN
Sbjct: 61 DREEQSSYTLTVTATDGGGPPLSSTATVTITVLDVNDN 98
Score = 105 bits (265), Expect = 3e-27
Identities = 45/100 (45%), Positives = 61/100 (61%), Gaps = 2/100 (2%)
Query: 383 IYEVDVPETTPVNTPIIRLKVSDADDGKNAQVFLEIVGGNEGGEFNINPETGMLYTAVTL 442
YEV VPE P T ++ + +D D G+N +V IV GNE G F+I+P TG + TA L
Sbjct: 1 SYEVSVPENAPPGTVVLTVSATDPDSGENGEVTYSIVSGNEDGLFSIDPSTGEITTAKPL 60
Query: 443 DAEDKAFYTLTVSAIDQGNAGTRKQSAAKVKVNIVDTNDN 482
D E+++ YTLTV+A D G G S A V + ++D NDN
Sbjct: 61 DREEQSSYTLTVTATDGG--GPPLSSTATVTITVLDVNDN 98
Score = 100 bits (250), Expect = 4e-25
Identities = 43/100 (43%), Positives = 56/100 (56%), Gaps = 3/100 (3%)
Query: 490 EMEVSINENEPAGTSVIKVTAKDKDSGENAYISYSIANLKPV-PFEIDHFSGVIKTTQVL 548
EVS+ EN P GT V+ V+A D DSGEN ++YSI + F ID +G I T + L
Sbjct: 1 SYEVSVPENAPPGTVVLTVSATDPDSGENGEVTYSIVSGNEDGLFSIDPSTGEITTAKPL 60
Query: 549 DYESMRREYILRVRASDWGLPYRRQTEMQLKIKLLDVNDN 588
D E + Y L V A+D G P + + I +LDVNDN
Sbjct: 61 DREE-QSSYTLTVTATDGGGP-PLSSTATVTITVLDVNDN 98
Score = 100 bits (250), Expect = 5e-25
Identities = 40/100 (40%), Positives = 59/100 (59%), Gaps = 6/100 (6%)
Query: 862 SFRVTENALNGTVIFKVNATDLDLGDNAKVVYSLMTDTQD--FAVDSATGSLYVSASLDR 919
V ENA GTV+ V+ATD D G+N +V YS+++ +D F++D +TG + + LDR
Sbjct: 3 EVSVPENAPPGTVVLTVSATDPDSGENGEVTYSIVSGNEDGLFSIDPSTGEITTAKPLDR 62
Query: 920 ERQDLYELKIRASDCDGRNDMYTLHADALVRVTIDDINDN 959
E Q Y L + A+D G L + A V +T+ D+NDN
Sbjct: 63 EEQSSYTLTVTATDGGGP----PLSSTATVTITVLDVNDN 98
Score = 86.6 bits (215), Expect = 2e-20
Identities = 40/100 (40%), Positives = 54/100 (54%), Gaps = 6/100 (6%)
Query: 162 EYEETVPEDLPLHTSILRVSAEDADLGRNGEIYYSFRDMNEQ--FSIHPTSGVVTLTRPL 219
YE +VPE+ P T +L VSA D D G NGE+ YS NE FSI P++G +T +PL
Sbjct: 1 SYEVSVPENAPPGTVVLTVSATDPDSGENGEVTYSIVSGNEDGLFSIDPSTGEITTAKPL 60
Query: 220 KYTDRSVHDLVVLGQDRGSVFKGGGKPSSAKLKIKVEQIN 259
++S + L V D G G S+A + I V +N
Sbjct: 61 DREEQSSYTLTVTATDGG----GPPLSSTATVTITVLDVN 96
Score = 64.6 bits (158), Expect = 1e-12
Identities = 32/91 (35%), Positives = 44/91 (48%), Gaps = 11/91 (12%)
Query: 285 VRVVDRDAGIHGEIASLDIVDGDPDGHFRIVPTKIDPGTKKKEYNIVVLKLLDREIAPLG 344
V D D+G +GE+ + IV G+ DG F I P+ I K LDRE
Sbjct: 19 VSATDPDSGENGEV-TYSIVSGNEDGLFSIDPS---------TGEITTAKPLDREEQSS- 67
Query: 345 YNLTLRAVDKGTPPRETYKATQVHLVDLNDN 375
Y LT+ A D G PP + + ++D+NDN
Sbjct: 68 YTLTVTATDGGGPPLSSTATVTITVLDVNDN 98
Score = 61.6 bits (150), Expect = 2e-11
Identities = 32/89 (35%), Positives = 49/89 (55%), Gaps = 4/89 (4%)
Query: 600 HVPRNLPIGREIITLSAIDFDAGN--IISYRIVSGNEDGCFALDITSGVLSIACDLTDVR 657
VP N P G ++T+SA D D+G ++Y IVSGNEDG F++D ++G ++ A L
Sbjct: 5 SVPENAPPGTVVLTVSATDPDSGENGEVTYSIVSGNEDGLFSIDPSTGEITTAKPLDREE 64
Query: 658 VNEREINVTATDSA--HFSDVVRIRINLV 684
+ + VTATD S + I ++
Sbjct: 65 QSSYTLTVTATDGGGPPLSSTATVTITVL 93
Score = 45.8 bits (109), Expect = 5e-06
Identities = 32/115 (27%), Positives = 44/115 (38%), Gaps = 22/115 (19%)
Query: 42 YNVSISENSNSKTYVTPEEKMGIYRGTSEVDIRFKISSGDRDKFFKAEERLVGDFWFLLI 101
Y VS+ EN+ T V G + ++ + I SG+ D F I
Sbjct: 2 YEVSVPENAPPGTVVLTVSATDPDSGENG-EVTYSIVSGNEDGLFS-------------I 47
Query: 102 RTRTGN---TDVLNRERKDKYILHIKATITHRDGKKASYEETTCKVHVNVLDTND 153
TG L+RE + Y L + AT DG +T V + VLD ND
Sbjct: 48 DPSTGEITTAKPLDREEQSSYTLTVTAT----DGGGPPLS-STATVTITVLDVND 97
>gnl|CDD|215665 pfam00028, Cadherin, Cadherin domain.
Length = 92
Score = 103 bits (260), Expect = 2e-26
Identities = 38/92 (41%), Positives = 50/92 (54%), Gaps = 1/92 (1%)
Query: 968 YSVKVREDIPVGTVVAILSASDPDLGQGGVVRYTIVSDNEADDVFSIDRLTGTIRVAKPL 1027
YS V E+ PVGT V ++A+D DLG G + Y+I+ F ID TG + KPL
Sbjct: 1 YSASVPENAPVGTEVLTVTATDADLGPNGRIFYSILGGGP-GGWFRIDPDTGDLSTTKPL 59
Query: 1028 DFEKRQVHSLVVRAKDNGSPPLYSEATLIVEV 1059
D E + L V A D+G PPL S T+ + V
Sbjct: 60 DRESIGEYELTVLATDSGGPPLSSTTTVTITV 91
Score = 83.9 bits (208), Expect = 2e-19
Identities = 35/94 (37%), Positives = 46/94 (48%), Gaps = 6/94 (6%)
Query: 862 SFRVTENALNGTVIFKVNATDLDLGDNAKVVYSLMTD--TQDFAVDSATGSLYVSASLDR 919
S V ENA GT + V ATD DLG N ++ YS++ F +D TG L + LDR
Sbjct: 2 SASVPENAPVGTEVLTVTATDADLGPNGRIFYSILGGGPGGWFRIDPDTGDLSTTKPLDR 61
Query: 920 ERQDLYELKIRASDCDGRNDMYTLHADALVRVTI 953
E YEL + A+D G T V +T+
Sbjct: 62 ESIGEYELTVLATDSGGPPLSST----TTVTITV 91
Score = 82.0 bits (203), Expect = 8e-19
Identities = 38/93 (40%), Positives = 49/93 (52%), Gaps = 2/93 (2%)
Query: 384 YEVDVPETTPVNTPIIRLKVSDADDGKNAQVFLEIVGGNEGGEFNINPETGMLYTAVTLD 443
Y VPE PV T ++ + +DAD G N ++F I+GG GG F I+P+TG L T LD
Sbjct: 1 YSASVPENAPVGTEVLTVTATDADLGPNGRIFYSILGGGPGGWFRIDPDTGDLSTTKPLD 60
Query: 444 AEDKAFYTLTVSAIDQGNAGTRKQSAAKVKVNI 476
E Y LTV A D G G S V + +
Sbjct: 61 RESIGEYELTVLATDSG--GPPLSSTTTVTITV 91
Score = 79.6 bits (197), Expect = 5e-18
Identities = 40/93 (43%), Positives = 48/93 (51%), Gaps = 3/93 (3%)
Query: 492 EVSINENEPAGTSVIKVTAKDKDSGENAYISYSIANLKPVP-FEIDHFSGVIKTTQVLDY 550
S+ EN P GT V+ VTA D D G N I YSI P F ID +G + TT+ LD
Sbjct: 2 SASVPENAPVGTEVLTVTATDADLGPNGRIFYSILGGGPGGWFRIDPDTGDLSTTKPLDR 61
Query: 551 ESMRREYILRVRASDWGLPYRRQTEMQLKIKLL 583
ES EY L V A+D G P T + I +L
Sbjct: 62 ES-IGEYELTVLATDSGGPPLSST-TTVTITVL 92
Score = 79.3 bits (196), Expect = 6e-18
Identities = 34/89 (38%), Positives = 49/89 (55%)
Query: 759 QVNESVPLKSTLTKIIARDRDLGYNGKLVFGISSGDNDSVFRIDPDSGELKVVGYLDRER 818
V E+ P+ + + + A D DLG NG++ + I G FRIDPD+G+L LDRE
Sbjct: 4 SVPENAPVGTEVLTVTATDADLGPNGRIFYSILGGGPGGWFRIDPDTGDLSTTKPLDRES 63
Query: 819 TSEYTLNITVYDLGKPQKSTSKMLPITIL 847
EY L + D G P S++ + IT+L
Sbjct: 64 IGEYELTVLATDSGGPPLSSTTTVTITVL 92
Score = 69.6 bits (171), Expect = 2e-14
Identities = 35/96 (36%), Positives = 49/96 (51%), Gaps = 6/96 (6%)
Query: 163 YEETVPEDLPLHTSILRVSAEDADLGRNGEIYYSFR--DMNEQFSIHPTSGVVTLTRPLK 220
Y +VPE+ P+ T +L V+A DADLG NG I+YS F I P +G ++ T+PL
Sbjct: 1 YSASVPENAPVGTEVLTVTATDADLGPNGRIFYSILGGGPGGWFRIDPDTGDLSTTKPLD 60
Query: 221 YTDRSVHDLVVLGQDRGSVFKGGGKPSSAKLKIKVE 256
++L VL D G G S+ + I V
Sbjct: 61 RESIGEYELTVLATDSG----GPPLSSTTTVTITVL 92
Score = 49.6 bits (119), Expect = 2e-07
Identities = 29/80 (36%), Positives = 34/80 (42%), Gaps = 11/80 (13%)
Query: 283 AIVRVVDRDAGIHGEIASLDIVDGDPDGHFRIVPTKIDPGTKKKEYNIVVLKLLDREIAP 342
V D D G +G I I+ G P G FRI P D G + K LDRE
Sbjct: 16 LTVTATDADLGPNGRIFYS-ILGGGPGGWFRIDP---DTGD------LSTTKPLDRESIG 65
Query: 343 LGYNLTLRAVDKGTPPRETY 362
Y LT+ A D G PP +
Sbjct: 66 E-YELTVLATDSGGPPLSST 84
Score = 48.4 bits (116), Expect = 5e-07
Identities = 31/90 (34%), Positives = 42/90 (46%), Gaps = 6/90 (6%)
Query: 599 GHVPRNLPIGREIITLSAIDFDAGN--IISYRIVSGNEDGCFALDITSGVLSIACDLTDV 656
VP N P+G E++T++A D D G I Y I+ G G F +D +G LS L D
Sbjct: 3 ASVPENAPVGTEVLTVTATDADLGPNGRIFYSILGGGPGGWFRIDPDTGDLSTTKPL-DR 61
Query: 657 RVNER-EINVTATDSAHF--SDVVRIRINL 683
E+ V ATDS S + I +
Sbjct: 62 ESIGEYELTVLATDSGGPPLSSTTTVTITV 91
Score = 33.8 bits (78), Expect = 0.071
Identities = 27/109 (24%), Positives = 39/109 (35%), Gaps = 22/109 (20%)
Query: 42 YNVSISENSNSKTYVTPEEKMGIYRGTSEVDIRFKISSGDRDKFFKAEERLVGDFWFLLI 101
Y+ S+ EN+ T V G + I + I G +F+ I
Sbjct: 1 YSASVPENAPVGTEVLTVTATDADLGPNGR-IFYSILGGGPGGWFR-------------I 46
Query: 102 RTRTGN---TDVLNRERKDKYILHIKATITHRD-GKKASYEETTCKVHV 146
TG+ T L+RE +Y L + AT D G TT + V
Sbjct: 47 DPDTGDLSTTKPLDRESIGEYELTVLAT----DSGGPPLSSTTTVTITV 91
>gnl|CDD|214520 smart00112, CA, Cadherin repeats. Cadherins are glycoproteins
involved in Ca2+-mediated cell-cell adhesion. Cadherin
domains occur as repeats in the extracellular regions
which are thought to mediate cell-cell contact when bound
to calcium.
Length = 81
Score = 99.3 bits (248), Expect = 5e-25
Identities = 40/80 (50%), Positives = 53/80 (66%), Gaps = 1/80 (1%)
Query: 986 SASDPDLGQGGVVRYTIVSDNEADDVFSIDRLTGTIRVAKPLDFEKRQVHSLVVRAKDNG 1045
SA+D D G+ G V Y+I+S N+ D +FSID TG I KPLD E++ ++L V A D G
Sbjct: 1 SATDADSGENGKVTYSILSGND-DGLFSIDPETGEITTTKPLDREEQPEYTLTVEATDGG 59
Query: 1046 SPPLYSEATLIVEVSDVNEN 1065
PPL S AT+ + V DVN+N
Sbjct: 60 GPPLSSTATVTITVLDVNDN 79
Score = 95.1 bits (237), Expect = 1e-23
Identities = 38/80 (47%), Positives = 51/80 (63%)
Query: 775 ARDRDLGYNGKLVFGISSGDNDSVFRIDPDSGELKVVGYLDRERTSEYTLNITVYDLGKP 834
A D D G NGK+ + I SG++D +F IDP++GE+ LDRE EYTL + D G P
Sbjct: 2 ATDADSGENGKVTYSILSGNDDGLFSIDPETGEITTTKPLDREEQPEYTLTVEATDGGGP 61
Query: 835 QKSTSKMLPITILDVNDNPP 854
S++ + IT+LDVNDN P
Sbjct: 62 PLSSTATVTITVLDVNDNAP 81
Score = 85.1 bits (211), Expect = 5e-20
Identities = 37/83 (44%), Positives = 50/83 (60%), Gaps = 2/83 (2%)
Query: 402 KVSDADDGKNAQVFLEIVGGNEGGEFNINPETGMLYTAVTLDAEDKAFYTLTVSAIDQGN 461
+DAD G+N +V I+ GN+ G F+I+PETG + T LD E++ YTLTV A D G
Sbjct: 1 SATDADSGENGKVTYSILSGNDDGLFSIDPETGEITTTKPLDREEQPEYTLTVEATDGG- 59
Query: 462 AGTRKQSAAKVKVNIVDTNDNDP 484
G S A V + ++D NDN P
Sbjct: 60 -GPPLSSTATVTITVLDVNDNAP 81
Score = 82.4 bits (204), Expect = 4e-19
Identities = 34/85 (40%), Positives = 49/85 (57%), Gaps = 6/85 (7%)
Query: 879 NATDLDLGDNAKVVYSLMTDTQD--FAVDSATGSLYVSASLDRERQDLYELKIRASDCDG 936
+ATD D G+N KV YS+++ D F++D TG + + LDRE Q Y L + A+D
Sbjct: 1 SATDADSGENGKVTYSILSGNDDGLFSIDPETGEITTTKPLDREEQPEYTLTVEATD--- 57
Query: 937 RNDMYTLHADALVRVTIDDINDNAP 961
L + A V +T+ D+NDNAP
Sbjct: 58 -GGGPPLSSTATVTITVLDVNDNAP 81
Score = 78.5 bits (194), Expect = 1e-17
Identities = 36/83 (43%), Positives = 47/83 (56%), Gaps = 3/83 (3%)
Query: 509 TAKDKDSGENAYISYSIANLKPV-PFEIDHFSGVIKTTQVLDYESMRREYILRVRASDWG 567
+A D DSGEN ++YSI + F ID +G I TT+ LD E + EY L V A+D G
Sbjct: 1 SATDADSGENGKVTYSILSGNDDGLFSIDPETGEITTTKPLDREE-QPEYTLTVEATDGG 59
Query: 568 LPYRRQTEMQLKIKLLDVNDNRP 590
P + + I +LDVNDN P
Sbjct: 60 GP-PLSSTATVTITVLDVNDNAP 81
Score = 59.7 bits (145), Expect = 4e-11
Identities = 29/81 (35%), Positives = 42/81 (51%), Gaps = 6/81 (7%)
Query: 181 SAEDADLGRNGEIYYSF--RDMNEQFSIHPTSGVVTLTRPLKYTDRSVHDLVVLGQDRGS 238
SA DAD G NG++ YS + + FSI P +G +T T+PL ++ + L V D G
Sbjct: 1 SATDADSGENGKVTYSILSGNDDGLFSIDPETGEITTTKPLDREEQPEYTLTVEATDGG- 59
Query: 239 VFKGGGKPSSAKLKIKVEQIN 259
G S+A + I V +N
Sbjct: 60 ---GPPLSSTATVTITVLDVN 77
Score = 59.3 bits (144), Expect = 6e-11
Identities = 32/92 (34%), Positives = 46/92 (50%), Gaps = 11/92 (11%)
Query: 286 RVVDRDAGIHGEIASLDIVDGDPDGHFRIVPTKIDPGTKKKEYNIVVLKLLDREIAPLGY 345
D D+G +G++ + I+ G+ DG F I P + G I K LDRE P Y
Sbjct: 1 SATDADSGENGKV-TYSILSGNDDGLFSIDP---ETGE------ITTTKPLDREEQPE-Y 49
Query: 346 NLTLRAVDKGTPPRETYKATQVHLVDLNDNKP 377
LT+ A D G PP + + ++D+NDN P
Sbjct: 50 TLTVEATDGGGPPLSSTATVTITVLDVNDNAP 81
Score = 40.0 bits (94), Expect = 4e-04
Identities = 23/74 (31%), Positives = 37/74 (50%), Gaps = 4/74 (5%)
Query: 615 SAIDFDAGN--IISYRIVSGNEDGCFALDITSGVLSIACDLTDVRVNEREINVTATDSA- 671
SA D D+G ++Y I+SGN+DG F++D +G ++ L E + V ATD
Sbjct: 1 SATDADSGENGKVTYSILSGNDDGLFSIDPETGEITTTKPLDREEQPEYTLTVEATDGGG 60
Query: 672 -HFSDVVRIRINLV 684
S + I ++
Sbjct: 61 PPLSSTATVTITVL 74
Score = 36.9 bits (86), Expect = 0.004
Identities = 25/85 (29%), Positives = 35/85 (41%), Gaps = 21/85 (24%)
Query: 72 DIRFKISSGDRDKFFKAEERLVGDFWFLLIRTRTGN---TDVLNRERKDKYILHIKATIT 128
+ + I SG+ D F I TG T L+RE + +Y L ++AT
Sbjct: 12 KVTYSILSGNDDGLFS-------------IDPETGEITTTKPLDREEQPEYTLTVEAT-- 56
Query: 129 HRDGKKASYEETTCKVHVNVLDTND 153
DG +T V + VLD ND
Sbjct: 57 --DGGGPP-LSSTATVTITVLDVND 78
>gnl|CDD|206635 cd00031, CA_like, Cadherin repeat-like domain. Cadherins are
glycoproteins involved in Ca2+-mediated cell-cell
adhesion. The cadherin repeat domains occur as tandem
repeats in the extracellular regions, which are thought
to mediate cell-cell contact when bound to calcium. They
play numerous roles in cell fate, signalling,
proliferation, differentiation, and migration; members
include E-, N-, P-, T-, VE-, CNR-, proto-, and
FAT-family cadherin, desmocollin, and desmoglein, a
large variety of domain architectures with varying
repeat copy numbers. Cadherin-repeat containing proteins
exist as monomers, homodimers, or heterodimers. This
family also includes the cadherin-like repeats of
extracellular alpha-dystroglycan.
Length = 98
Score = 38.9 bits (90), Expect = 0.002
Identities = 22/77 (28%), Positives = 36/77 (46%), Gaps = 3/77 (3%)
Query: 779 DLGYNGKLVFGISSGDND---SVFRIDPDSGELKVVGYLDRERTSEYTLNITVYDLGKPQ 835
DL + + IS+ + S +P SG L+ + LDRE + ++++ LG
Sbjct: 22 DLIASSGEIIKISAAGKEALPSWLHWEPHSGILEGLEKLDREDKGVHYISVSAASLGANV 81
Query: 836 KSTSKMLPITILDVNDN 852
TS + I + D NDN
Sbjct: 82 PQTSSVFSIEVYDENDN 98
Score = 36.2 bits (83), Expect = 0.013
Identities = 23/98 (23%), Positives = 40/98 (40%), Gaps = 6/98 (6%)
Query: 389 PETTPVNTPIIRLKVSDADD-GKNAQVFLEIVG-GNEG--GEFNINPETGMLYTAVTLDA 444
+ +VS D ++ ++I G E + P +G+L LD
Sbjct: 3 DGSAVEGRSRGSFRVSIPTDLIASSGEIIKISAAGKEALPSWLHWEPHSGILEGLEKLDR 62
Query: 445 EDKAFYTLTVSAIDQGNAGTRKQSAAKVKVNIVDTNDN 482
EDK + ++VSA G Q+++ + + D NDN
Sbjct: 63 EDKGVHYISVSAASLG--ANVPQTSSVFSIEVYDENDN 98
Score = 33.5 bits (76), Expect = 0.12
Identities = 21/103 (20%), Positives = 37/103 (35%), Gaps = 7/103 (6%)
Query: 965 LPNYSVKVREDIPVGTVVAILSASDPDLGQGGVVRYTIVS--DNEADDVFSIDRLTGTIR 1022
+P+ S V+I + DL I + + +G +
Sbjct: 1 IPDGSAVEGRSRG-SFRVSIPT----DLIASSGEIIKISAAGKEALPSWLHWEPHSGILE 55
Query: 1023 VAKPLDFEKRQVHSLVVRAKDNGSPPLYSEATLIVEVSDVNEN 1065
+ LD E + VH + V A G+ + + +EV D N+N
Sbjct: 56 GLEKLDREDKGVHYISVSAASLGANVPQTSSVFSIEVYDENDN 98
>gnl|CDD|203892 pfam08266, Cadherin_2, Cadherin-like. This cadherin domain is
usually the most N-terminal copy of the domain.
Length = 84
Score = 32.1 bits (74), Expect = 0.26
Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 4/44 (9%)
Query: 778 RDLGYN-GKLV---FGISSGDNDSVFRIDPDSGELKVVGYLDRE 817
+DLG N +L I SG N F+++P++G+L V +DRE
Sbjct: 22 KDLGLNVQELAARGARIVSGGNKQYFQLNPETGDLLVNERIDRE 65
Score = 31.3 bits (72), Expect = 0.40
Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 9/62 (14%)
Query: 865 VTENALNGTVIFKVNATDL--DLGD----NAKVVYSLMTDTQDFAVDSATGSLYVSASLD 918
V E G+ + + A DL ++ + A++V + Q F ++ TG L V+ +D
Sbjct: 7 VPEETEPGSFVGNL-AKDLGLNVQELAARGARIVSG--GNKQYFQLNPETGDLLVNERID 63
Query: 919 RE 920
RE
Sbjct: 64 RE 65
>gnl|CDD|176861 cd07819, SRPBCC_2, Ligand-binding SRPBCC domain of an
uncharacterized subfamily of proteins. Uncharacterized
group of the SRPBCC
(START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain
superfamily. SRPBCC domains have a deep hydrophobic
ligand-binding pocket and they bind diverse ligands.
SRPBCC domains include the steroidogenic acute
regulatory protein (StAR)-related lipid transfer (START)
domains of mammalian STARD1-STARD15, the C-terminal
catalytic domains of the alpha oxygenase subunit of
Rieske-type non-heme iron aromatic ring-hydroxylating
oxygenases (RHOs_alpha_C), Class I and II
phosphatidylinositol transfer proteins (PITPs), Bet v 1
(the major pollen allergen of white birch, Betula
verrucosa), CoxG, CalC, and related proteins. Other
members of the superfamily include PYR/PYL/RCAR plant
proteins, the aromatase/cyclase (ARO/CYC) domains of
proteins such as Streptomyces glaucescens
tetracenomycin, and the SRPBCC domains of Streptococcus
mutans Smu.440 and related proteins.
Length = 140
Score = 32.6 bits (75), Expect = 0.39
Identities = 10/55 (18%), Positives = 23/55 (41%)
Query: 274 VEQSYADIYAIVRVVDRDAGIHGEIASLDIVDGDPDGHFRIVPTKIDPGTKKKEY 328
+E A + ++ V+ ++ S++++ D DG +V + K Y
Sbjct: 10 IEAPPAAVMDVLADVEAYPEWSPKVKSVEVLLRDNDGRPEMVRIGVGAYGIKDTY 64
>gnl|CDD|235073 PRK02813, PRK02813, putative aminopeptidase 2; Provisional.
Length = 428
Score = 32.9 bits (76), Expect = 0.96
Identities = 38/147 (25%), Positives = 54/147 (36%), Gaps = 38/147 (25%)
Query: 777 DRDLGYNGKLVFGISSGDNDSVFRIDPDSGELKVVG----YLDRERTSEYTLNITVYDLG 832
DRDL G++V + + ID + + +L+RE LN
Sbjct: 121 DRDLSLAGRVVLRDGNKPESRLVNIDRP---ILRIPNLAIHLNREVNEGLKLN------- 170
Query: 833 KPQKSTSKMLPITILDVNDNPPKFEKSLASFRVTENALNGTVIFKVNATDLDLGDNAKVV 892
PQK +LPI + V + F + LA E V+A D+ L
Sbjct: 171 -PQK---HLLPILLNGVGEKEGDFLELLA-----EEL-------GVDADDI-LD------ 207
Query: 893 YSLMT-DTQDFAVDSATGSLYVSASLD 918
+ L DTQ A+ A G S LD
Sbjct: 208 FDLFLYDTQPGALIGANGEFISSGRLD 234
>gnl|CDD|215096 PLN00192, PLN00192, aldehyde oxidase.
Length = 1344
Score = 33.2 bits (76), Expect = 0.97
Identities = 20/74 (27%), Positives = 26/74 (35%), Gaps = 1/74 (1%)
Query: 449 FYTLTVSAIDQGNAGTRKQSAAKVKVNIVDTNDNDPLFDSPEMEVSIN-ENEPAGTSVIK 507
L S N S K + D L S + +V N E P G + K
Sbjct: 526 LSPLIESNAKSSNGWLDGGSNTKQNPDQHDDVKKPTLLLSSKQQVEENNEYHPVGEPIKK 585
Query: 508 VTAKDKDSGENAYI 521
V A + SGE Y+
Sbjct: 586 VGAALQASGEAVYV 599
>gnl|CDD|220006 pfam08758, Cadherin_pro, Cadherin prodomain like. Cadherins are a
family of proteins that mediate calcium dependent
cell-cell adhesion. They are activated through cleavage
of a prosequence in the late Golgi. This domain
corresponds to the folded region of the prosequence, and
is termed the prodomain. The prodomain shows structural
resemblance to the cadherin domain, but lacks all the
features known to be important for cadherin-cadherin
interactions.
Length = 90
Score = 30.3 bits (69), Expect = 1.0
Identities = 30/108 (27%), Positives = 44/108 (40%), Gaps = 29/108 (26%)
Query: 376 KPVFDREIYEVDVPETTPVNTPIIRLKVSDADDGKNAQVFLEIVGGNEGG-------EFN 428
KP F E+Y VP P+ R+K +D G +F
Sbjct: 3 KPGFSEEVYTFLVPRRLEEGQPLGRVKFNDCK-------------GRRRIQYESSDPDFK 49
Query: 429 INPETGMLYT--AVTLDAEDKAFYTLTVSAIDQGNAGTRKQSAAKVKV 474
+N + G +Y +VTL +E K+F V A D + TR+ + KV V
Sbjct: 50 VNED-GTVYAKRSVTLHSEQKSF---LVHAWD---SETREMAEVKVTV 90
>gnl|CDD|198189 cd09935, SH2_ABL, Src homology 2 (SH2) domain found in Abelson
murine lymphosarcoma virus (ABL) proteins. ABL-family
proteins are highly conserved tyrosine kinases. Each
ABL protein contains an SH3-SH2-TK (Src homology 3-Src
homology 2-tyrosine kinase) domain cassette, which
confers autoregulated kinase activity and is common
among nonreceptor tyrosine kinases. Several types of
posttranslational modifications control ABL catalytic
activity, subcellular localization, and stability, with
consequences for both cytoplasmic and nuclear ABL
functions. Binding partners provide additional
regulation of ABL catalytic activity, substrate
specificity, and downstream signaling. By combining
this cassette with actin-binding and -bundling domain,
ABL proteins are capable of connecting
phosphoregulation with actin-filament reorganization.
Vertebrate paralogs, ABL1 and ABL2, have evolved to
perform specialized functions. ABL1 includes nuclear
localization signals and a DNA binding domain which is
used to mediate DNA damage-repair functions, while ABL2
has additional binding capacity for actin and for
microtubules to enhance its cytoskeletal remodeling
functions. SH2 is involved in several autoinhibitory
mechanism that constrain the enzymatic activity of the
ABL-family kinases. In one mechanism SH2 and SH3 cradle
the kinase domain while a cap sequence stabilizes the
inactive conformation resulting in a locked inactive
state. Another involves phosphatidylinositol
4,5-bisphosphate (PIP2) which binds the SH2 domain
through residues normally required for phosphotyrosine
binding in the linker segment between the SH2 and
kinase domains. The SH2 domain contributes to ABL
catalytic activity and target site specificity. It is
thought that the ABL catalytic site and SH2 pocket have
coevolved to recognize the same sequences. Recent work
now supports a hierarchical processivity model in which
the substrate target site most compatible with ABL
kinase domain preferences is phosphorylated with
greatest efficiency. If this site is compatible with
the ABL SH2 domain specificity, it will then reposition
and dock in the SH2 pocket. This mechanism also
explains how ABL kinases phosphorylates poor targets on
the same substrate if they are properly positioned and
how relatively poor substrate proteins might be
recruited to ABL through a complex with strong
substrates that can also dock with the SH2 pocket. In
general SH2 domains are involved in signal
transduction. They typically bind pTyr-containing
ligands via two surface pockets, a pTyr and hydrophobic
binding pocket, allowing proteins with SH2 domains to
localize to tyrosine phosphorylated sites.
Length = 94
Score = 29.7 bits (67), Expect = 2.0
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 31 RSSSLRFTQKDYNVSISENSNSKTYVTPEEK 61
S SLR+ + Y+ ISE+S+ K YVT E +
Sbjct: 39 YSISLRYDGRVYHYRISEDSDGKVYVTQEHR 69
>gnl|CDD|238579 cd01174, ribokinase, Ribokinase catalyses the phosphorylation of
ribose to ribose-5-phosphate using ATP. This reaction is
the first step in the ribose metabolism. It traps ribose
within the cell after uptake and also prepares the sugar
for use in the synthesis of nucleotides and histidine,
and for entry into the pentose phosphate pathway.
Ribokinase is dimeric in solution.
Length = 292
Score = 29.8 bits (68), Expect = 8.4
Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 4/56 (7%)
Query: 493 VSINENEPAGTSVIKVTAKDKDSGENAYISYSIANLKPVPFEIDHFSGVIKTTQVL 548
V + P GT+VI V +SGEN + AN + P ++D +I VL
Sbjct: 82 VEVVVGAPTGTAVITVD----ESGENRIVVVPGANGELTPADVDAALELIAAADVL 133
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.316 0.135 0.383
Gapped
Lambda K H
0.267 0.0710 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 55,969,932
Number of extensions: 5685399
Number of successful extensions: 4339
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4305
Number of HSP's successfully gapped: 52
Length of query: 1095
Length of database: 10,937,602
Length adjustment: 107
Effective length of query: 988
Effective length of database: 6,191,724
Effective search space: 6117423312
Effective search space used: 6117423312
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 64 (28.5 bits)