RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy1041
(1095 letters)
>1q55_A EP-cadherin, C-cadherin; trans interaction, desmosome, junction,
adhesion, structural protein; HET: NAG NDG; 30.00A {Mus
musculus} SCOP: i.20.1.1 PDB: 1q5a_A* 1q5b_A* 1q5c_A*
Length = 880
Score = 343 bits (881), Expect = e-103
Identities = 124/554 (22%), Positives = 206/554 (37%), Gaps = 75/554 (13%)
Query: 560 RVRASDWGLPYRRQTEMQLKIKLLDVNDNRPQFEKVDCLGHVPR-NLPIGREIITLSAID 618
R+R + L + DV+ +P F + + V R L GR++ ++ D
Sbjct: 5 RLRNASVWLCGLLCLLQVVPSINADVSGCKPGFSSAEYIFSVNRRELERGRKLGKVNFSD 64
Query: 619 FDAGNIISYRIVSGNEDGCFALDITSGVLSIACDLTDVRVNEREINVTATDSAHFSDVVR 678
Y + F + G + + + + + I+ S +
Sbjct: 65 CTTRKHGLYDVGDSR----FRVL-PDGTVLVKRHVKLHKDTKFTISTWDARGIKHSTNIA 119
Query: 679 IRINLVSARRIPEPGKTLENDSGGFECKDTGVARRLTEVLAAAEKNNLRSQSYQEEFAMM 738
+ R E + + VL E + +
Sbjct: 120 V---ASKRHRSGEEAHSRSSK---------------LPVLTFPETHTGLKRKK------- 154
Query: 739 PSRYGENVHVPEFFSFPIELQVNESVPLKSTLTKIIARDRDLGYNGKLVFGISSGDNDS- 797
++ PI++ NE P L +I + K+ + I+ D+
Sbjct: 155 ----------RDWVIPPIKVSENERGPFPKRLVQI---KSNKDRFNKVYYSITGQGADNP 201
Query: 798 ---VFRIDPDSGELKVVGYLDRERTSEYTLNITVYDLGKPQKSTSKMLPITILDVNDNPP 854
VFRI+ ++G + V LDRE +Y L+ + I ++D NDN P
Sbjct: 202 PQGVFRIEWETGWMLVTRPLDREEYDKYVLSSHAVSENGSPVEEPMEITINVIDQNDNRP 261
Query: 855 KFEKSLASFRVTENALNGTVIFKVNATDLD---LGDNAKVVYSLMTDTQD------FAVD 905
KF + + V E GT + V+ATD D N + YS++ + F ++
Sbjct: 262 KFTQDVFRGSVREGVQPGTQVMAVSATDEDDNIDSLNGVLSYSILKQDPEEPIPNLFTIN 321
Query: 906 SATGSLYVSAS-LDRERQDLYELKIRASDCDGRNDMYTLHADALVRVTIDDINDNAPNFA 964
TG + + + LDRE+ Y L ++A+D +G L + + I D NDNAP F
Sbjct: 322 RETGVISLIGTGLDREKFPEYTLTVQATDLEGA----GLSVEGKAIIQITDANDNAPIFD 377
Query: 965 LPNYSVKVREDIPVGTVVAILSASDPDLGQ-GGVVRYTIVSDNEADDVFSI----DRLTG 1019
Y+ V E+ +G V LS +D D+ + NE F+I + G
Sbjct: 378 PKTYTALVPEN-EIGFEVQRLSVTDLDMPGTPAWQAVYKIRVNE-GGFFNITTDPESNQG 435
Query: 1020 TIRVAKPLDFEKRQVHSLVVRAKD---NGSPPLYSEATLIVEVSDVNENMNAPVFSDFVY 1076
+ AK LDFE R+ + L + ++ P S AT+ V V DVNE P F V
Sbjct: 436 ILTTAKGLDFELRKQYVLQITVENAEPFSVPLPTSTATVTVTVEDVNEA---PFFVPAVS 492
Query: 1077 QATVKENQPIGTSL 1090
+ V E+ G +
Sbjct: 493 RVDVSEDLSRGEKI 506
Score = 300 bits (770), Expect = 3e-87
Identities = 143/699 (20%), Positives = 244/699 (34%), Gaps = 97/699 (13%)
Query: 36 RFTQKDYNVSISENSNSK-TYVTP-------EEKMGIYRGTSEVDIRFKISSGDRDKFFK 87
F+ +Y S++ + + K G+Y D RF++ D K
Sbjct: 36 GFSSAEYIFSVNRRELERGRKLGKVNFSDCTTRKHGLY---DVGDSRFRVLP-DGTVLVK 91
Query: 88 AEERLVGDFWFLLIRTRTGNTDVLNRERKDKYILHIKATITHRDGKKASYEETTCKVHVN 147
+L D F + R K + + + + S +
Sbjct: 92 RHVKLHKDTKFTISTW-------DARGIKHSTNIAVASKRHRSGEEAHSRS-----SKLP 139
Query: 148 VLDTNDLNPLFYPTEYEETVP-------EDLPLHTSILRVSAEDADLGRNGEIYYSF--- 197
VL + + + + +P E P ++++ ++ R ++YYS
Sbjct: 140 VLTFPETHTGLKRKKRDWVIPPIKVSENERGPFPKRLVQI---KSNKDRFNKVYYSITGQ 196
Query: 198 ---RDMNEQFSIHPTSGVVTLTRPLKYTDRSVHDLVVLGQDRGSVFKGGGKP--SSAKLK 252
F I +G + +TRPL + + L G P ++
Sbjct: 197 GADNPPQGVFRIEWETGWMLVTRPLDREEYDKYVLSSHAVS------ENGSPVEEPMEIT 250
Query: 253 IKVEQIN----LYGPEIYVQSLPDIVEQSYADIYAIVRV--VDRDAGIHGEIASLD--IV 304
I V N + +++ S+ E ++ V D D I L I+
Sbjct: 251 INVIDQNDNRPKFTQDVFRGSVR---EGVQPG-TQVMAVSATDEDDNIDSLNGVLSYSIL 306
Query: 305 DGDPD----GHFRIVPTKIDPGTKKKEYNI-VVLKLLDREIAPLGYNLTLRAVDKGTPPR 359
DP+ F I + T I ++ LDRE P Y LT++A D
Sbjct: 307 KQDPEEPIPNLFTI-----NRETGV----ISLIGTGLDREKFPE-YTLTVQATDLEGAGL 356
Query: 360 ETYKATQVHLVDLNDNKPVFDREIYEVDVPETTPVNTPIIRLKVSDAD-DGKNAQVFLEI 418
+ + D NDN P+FD + Y VPE + + RL V+D D G A +
Sbjct: 357 SVEGKAIIQITDANDNAPIFDPKTYTALVPEN-EIGFEVQRLSVTDLDMPGTPAWQAVYK 415
Query: 419 VGGNEGGEFNINPE----TGMLYTAVTLDAEDKAFYTLTVSAIDQGNAGTRKQSA-AKVK 473
+ NEGG FNI + G+L TA LD E + Y L ++ + ++ A V
Sbjct: 416 IRVNEGGFFNITTDPESNQGILTTAKGLDFELRKQYVLQITVENAEPFSVPLPTSTATVT 475
Query: 474 VNIVDTNDNDPLFDSPEMEVSINENEPAGTSVIKVTAKDKDSGENAYISYSIANLKPVPF 533
V + D N+ P F V ++E+ G +I + A+D D + +SY I N
Sbjct: 476 VTVEDVNEA-PFFVPAVSRVDVSEDLSRGEKIISLVAQDPDKQQIQKLSYFIGNDPARWL 534
Query: 534 EIDHFSGVIKTTQVLDYES---MRREYILRVRASDWGLPYRRQTEMQLKIKLLDVNDNRP 590
++ +G++ LD ES Y + + +D G+ L + +LDVNDN P
Sbjct: 535 TVNKDNGIVTGNGNLDRESEYVKNNTYTVIMLVTDDGVS-VGTGTGTLILHVLDVNDNGP 593
Query: 591 QFEKVDCLGHVPRNLPIGREIITLSAIDFDA---GNIISYRIVSGNEDGCFALDITSGVL 647
P L+ D D + G++ A + G
Sbjct: 594 VPSPRVFTMCDQNPEP-----QVLTISDADIPPNTYPYKVSLSHGSDLTWKAELDSKGTS 648
Query: 648 SIACDLTDVRVNEREINVTATDSAHF--SDVVRIRINLV 684
+ ++ + I V +D+ + VV +
Sbjct: 649 MLLSPTQQLKKGDYSIYVLLSDAQNNPQLTVVNATVCSC 687
Score = 298 bits (765), Expect = 1e-86
Identities = 127/574 (22%), Positives = 217/574 (37%), Gaps = 65/574 (11%)
Query: 140 TTCKVHVNVLDTNDLNPLFYPTEYEETVPED-LPLHTSILRVSAEDADLGRNGEIYYSFR 198
V D + P F EY +V L + +V+ D ++G
Sbjct: 19 LLQVVPSINADVSGCKPGFSSAEYIFSVNRRELERGRKLGKVNFSDCTTRKHGLYDVG-- 76
Query: 199 DMNEQFSIHPTSGVVTLTRPLKYTDRSVHDLVVLGQDR----------GSVFKGGGKPSS 248
+ +F + P G V + R +K + + + G + S
Sbjct: 77 --DSRFRVLPD-GTVLVKRHVKLHKDTKFTISTWDARGIKHSTNIAVASKRHRSGEEAHS 133
Query: 249 AKLKIKVEQINLYGPEI------YVQSLPDIVEQSYADIYAIVRVVDRDAGIHGEIA--- 299
K+ V + +V + E + + + ++
Sbjct: 134 RSSKLPVLTFPETHTGLKRKKRDWVIPPIKVSENERGPFPKRLVQIKSNKDRFNKVYYSI 193
Query: 300 SLDIVDGDPDGHFRIVPTKIDPGTKKKEYNIVVLKLLDREIAPLGYNLTLRAVDKGTPPR 359
+ D P G FRI + T ++V + LDRE Y L+ AV + P
Sbjct: 194 TGQGADNPPQGVFRI-----EWETG----WMLVTRPLDREEYDK-YVLSSHAVSENGSPV 243
Query: 360 ETYKATQVHLVDLNDNKPVFDREIYEVDVPETTPVNTPIIRLKVSDADD---GKNAQVFL 416
E ++++D NDN+P F ++++ V E T ++ + +D DD N +
Sbjct: 244 EEPMEITINVIDQNDNRPKFTQDVFRGSVREGVQPGTQVMAVSATDEDDNIDSLNGVLSY 303
Query: 417 EIVGGNEGGE----FNINPETGMLYTAVT-LDAEDKAFYTLTVSAIDQGNAGTRKQSAAK 471
I+ + F IN ETG++ T LD E YTLTV A D AG K
Sbjct: 304 SILKQDPEEPIPNLFTINRETGVISLIGTGLDREKFPEYTLTVQATDLEGAG--LSVEGK 361
Query: 472 VKVNIVDTNDNDPLFDSPEMEVSINENEPAGTSVIKVTAKDKDSGENA--YISYSIANLK 529
+ I D NDN P+FD + ENE G V +++ D D Y I +
Sbjct: 362 AIIQITDANDNAPIFDPKTYTALVPENEI-GFEVQRLSVTDLDMPGTPAWQAVYKIRVNE 420
Query: 530 PVPFEI----DHFSGVIKTTQVLDYESMRREYILRVRASD---WGLPYRRQTEMQLKIKL 582
F I + G++ T + LD+E ++Y+L++ + + +P T + + +
Sbjct: 421 GGFFNITTDPESNQGILTTAKGLDFELR-KQYVLQITVENAEPFSVPLPTST-ATVTVTV 478
Query: 583 LDVNDNRPQFEKVDCLGHVPRNLPIGREIITLSAIDFDAGNI--ISYRIVSGNEDGCFAL 640
DVN+ P F V +L G +II+L A D D I +SY I + + +
Sbjct: 479 EDVNEA-PFFVPAVSRVDVSEDLSRGEKIISLVAQDPDKQQIQKLSYFIGN-DPARWLTV 536
Query: 641 DITSGVLSIACDL----TDVRVNEREINVTATDS 670
+ +G+++ +L V+ N + + TD
Sbjct: 537 NKDNGIVTGNGNLDRESEYVKNNTYTVIMLVTDD 570
Score = 291 bits (745), Expect = 6e-84
Identities = 111/544 (20%), Positives = 190/544 (34%), Gaps = 60/544 (11%)
Query: 73 IRFKISSGDRDKFFKAEERLVGDFWFLLIRTRTGN---TDVLNRERKDKYILHIKATITH 129
+ + I+ A+ G F I TG T L+RE DKY+L A
Sbjct: 189 VYYSITGQG------ADNPPQGVF---RIEWETGWMLVTRPLDREEYDKYVLSSHAV--- 236
Query: 130 RDGKKASYEETTCKVHVNVLDTNDLNPLFYPTEYEETVPEDLPLHTSILRVSAEDAD--- 186
+ EE ++ +NV+D ND P F + +V E + T ++ VSA D D
Sbjct: 237 -SENGSPVEEPM-EITINVIDQNDNRPKFTQDVFRGSVREGVQPGTQVMAVSATDEDDNI 294
Query: 187 LGRNGEIYYSF------RDMNEQFSIHPTSGVVTLTR-PLKYTDRSVHDLVVLGQDRGSV 239
NG + YS + F+I+ +GV++L L + L V D
Sbjct: 295 DSLNGVLSYSILKQDPEEPIPNLFTINRETGVISLIGTGLDREKFPEYTLTVQATDLE-- 352
Query: 240 FKGGGKPSSAKLKIKVEQINLYGPEIYVQSL-PDIVEQSYADIYAIVRVVDRDAGIHGEI 298
G G K I++ N P ++ + E + V D D
Sbjct: 353 --GAGLSVEGKAIIQITDANDNAPIFDPKTYTALVPENEIGFEVQRLSVTDLDMPGTPAW 410
Query: 299 ASLDIVDGDPDGHFRIVPTKIDPGTKKKEYNIVVLKLLDREIAPLGYNLTLRAVDK---G 355
++ + + G F I DP + + + K LD E+ Y L + +
Sbjct: 411 QAVYKIRVNEGGFFNITT---DPES--NQGILTTAKGLDFELRKQ-YVLQITVENAEPFS 464
Query: 356 TPPRETYKATQVHLVDLNDNKPVFDREIYEVDVPETTPVNTPIIRLKVSDADDGKNAQVF 415
P + V + D+N+ P F + VDV E II L D D + ++
Sbjct: 465 VPLPTSTATVTVTVEDVNEA-PFFVPAVSRVDVSEDLSRGEKIISLVAQDPDKQQIQKLS 523
Query: 416 LEIVGGNEGGEFNINPETGMLYTAVTLDAEDKAF----YTLTVSAIDQGNAGTRKQSAAK 471
I G + +N + G++ LD E + YT+ + D G +
Sbjct: 524 YFI-GNDPARWLTVNKDNGIVTGNGNLDRESEYVKNNTYTVIMLVTDDGV--SVGTGTGT 580
Query: 472 VKVNIVDTNDNDPLFDSPEMEVSINENEPAGTSVIKVTAKDKDSGENAY-ISYSIANLKP 530
+ ++++D NDN P+ + EP +T D D N Y S+++
Sbjct: 581 LILHVLDVNDNGPVPSPRVFTMCDQNPEP-----QVLTISDADIPPNTYPYKVSLSHGSD 635
Query: 531 VPFEI-DHFSGVIKTTQVLDYESMRREYILRVRASDWGLPYRRQTEMQLKIKLLDVNDNR 589
+ ++ G + +Y + V SD + + +
Sbjct: 636 LTWKAELDSKGTSMLLSPTQQLK-KGDYSIYVLLSDAQNNPQLTV---VNATVCSCEGKA 691
Query: 590 PQFE 593
+ +
Sbjct: 692 IKCQ 695
Score = 236 bits (603), Expect = 5e-65
Identities = 64/337 (18%), Positives = 125/337 (37%), Gaps = 26/337 (7%)
Query: 744 ENVHVPEFFSFPIELQVNESVPLKSTLTKIIARDRDLGYNGK-LVFGISSGDNDSVFRID 802
N + P F V E+ + + ++ D D+ + F I
Sbjct: 369 ANDNAPIFDPKTYTALVPEN-EIGFEVQRLSVTDLDMPGTPAWQAVYKIRVNEGGFFNIT 427
Query: 803 PDS----GELKVVGYLDRERTSEYTLNITVYD---LGKPQKSTSKMLPITILDVNDNPPK 855
D G L LD E +Y L ITV + P +++ + +T+ DVN+ P
Sbjct: 428 TDPESNQGILTTAKGLDFELRKQYVLQITVENAEPFSVPLPTSTATVTVTVEDVNE-APF 486
Query: 856 FEKSLASFRVTENALNGTVIFKVNATDLDLGDNAKVVYSLMTDTQD-FAVDSATGSLYVS 914
F +++ V+E+ G I + A D D K+ Y + D V+ G + +
Sbjct: 487 FVPAVSRVDVSEDLSRGEKIISLVAQDPDKQQIQKLSYFIGNDPARWLTVNKDNGIVTGN 546
Query: 915 ASLDRE----RQDLYELKIRASDCDGRNDMYTLHADALVRVTIDDINDNAPNFALPNYSV 970
+LDRE + + Y + + +D + + + + + D+NDN P + +++
Sbjct: 547 GNLDRESEYVKNNTYTVIMLVTD----DGVSVGTGTGTLILHVLDVNDNGPVPSPRVFTM 602
Query: 971 KVREDIPVGTVVAILSASDPDLGQ-GGVVRYTIVSDNEADDVFSIDRLTGTIRVAKPLDF 1029
+ P +L+ SD D+ + ++ ++ + GT + P
Sbjct: 603 CDQNPEPQ-----VLTISDADIPPNTYPYKVSLSHGSD-LTWKAELDSKGTSMLLSPTQQ 656
Query: 1030 EKRQVHSLVVRAKDNGSPPLYSEATLIVEVSDVNENM 1066
K+ +S+ V D + P + V +
Sbjct: 657 LKKGDYSIYVLLSDAQNNPQLTVVNATVCSCEGKAIK 693
Score = 185 bits (472), Expect = 2e-48
Identities = 64/354 (18%), Positives = 122/354 (34%), Gaps = 47/354 (13%)
Query: 351 AVDKGTPPRETYKATQVHLVDLNDNKPVFDREIYEVDVPE-TTPVNTPIIRLKVSDADDG 409
A + D++ KP F Y V + ++ SD
Sbjct: 9 ASVWLCGLLCLLQVVPSINADVSGCKPGFSSAEYIFSVNRRELERGRKLGKVNFSDCTTR 68
Query: 410 KNAQVFLEIVGGNEGGEFNINPETGMLYTAVTLDAEDKAFYTLTVSAIDQGNAGT----- 464
K+ + F + P G + + +T++ T
Sbjct: 69 KHGLYDVGD------SRFRVLP-DGTVLVKRHVKLHKDTKFTISTWDARGIKHSTNIAVA 121
Query: 465 -------RKQSAAKVKVNIVDTNDNDPLFD-------SPEMEVSINENEPAGTSVIKVTA 510
+ + K+ ++ + P ++VS NE P ++++ +
Sbjct: 122 SKRHRSGEEAHSRSSKLPVLTFPETHTGLKRKKRDWVIPPIKVSENERGPFPKRLVQIKS 181
Query: 511 KDKDSGENAYISYSIA-----NLKPVPFEIDHFSGVIKTTQVLDYESMRREYILRVRASD 565
+ + YSI N F I+ +G + T+ LD E +Y+L A
Sbjct: 182 ---NKDRFNKVYYSITGQGADNPPQGVFRIEWETGWMLVTRPLDRE-EYDKYVLSSHAVS 237
Query: 566 WGLPYRRQTEMQLKIKLLDVNDNRPQFEKVDCLGHVPRNLPIGREIITLSAIDFDAGN-- 623
+ M++ I ++D NDNRP+F + G V + G +++ +SA D D
Sbjct: 238 ENGS-PVEEPMEITINVIDQNDNRPKFTQDVFRGSVREGVQPGTQVMAVSATDEDDNIDS 296
Query: 624 ---IISYRIVSGNEDGC----FALDITSGVLSIACDLTDVRVNER-EINVTATD 669
++SY I+ + + F ++ +GV+S+ D + V ATD
Sbjct: 297 LNGVLSYSILKQDPEEPIPNLFTINRETGVISLIGTGLDREKFPEYTLTVQATD 350
>1l3w_A EP-cadherin, C-cadherin; cell adhesion, calcium binding,
extracellular, ECT metal binding protein; HET: NAG NDG;
3.08A {Xenopus laevis} SCOP: b.1.6.1 b.1.6.1 b.1.6.1
b.1.6.1 b.1.6.1
Length = 546
Score = 314 bits (806), Expect = 1e-95
Identities = 102/366 (27%), Positives = 159/366 (43%), Gaps = 34/366 (9%)
Query: 747 HVPEFFSFPIELQVNESVPLKSTLTKIIARDRDLGYNGKLVFGISSGDNDS----VFRID 802
H ++ PI++ NE P L +I + K+ + I+ D+ VFRI+
Sbjct: 4 HHHDWVIPPIKVSENERGPFPKRLVQI---KSNKDRFNKVYYSITGQGADNPPQGVFRIE 60
Query: 803 PDSGELKVVGYLDRERTSEYTLNITVYDLGKPQKSTSKMLPITILDVNDNPPKFEKSLAS 862
++G + V LDRE +Y L+ + I ++D NDN PKF + +
Sbjct: 61 WETGWMLVTRPLDREEYDKYVLSSHAVSENGSPVEEPMEITINVIDQNDNRPKFTQDVFR 120
Query: 863 FRVTENALNGTVIFKVNATDLD---LGDNAKVVYSLMTDTQD------FAVDSATGSLYV 913
V E GT + V+ATD D N + YS++ + F ++ TG + +
Sbjct: 121 GSVREGVQPGTQVMAVSATDEDDNIDSLNGVLSYSILKQDPEEPIPNLFTINRETGVISL 180
Query: 914 SAS-LDRERQDLYELKIRASDCDGRNDMYTLHADALVRVTIDDINDNAPNFALPNYSVKV 972
+ LDRE+ Y L ++A+D +G L + + I D NDNAP F Y+ V
Sbjct: 181 IGTGLDREKFPEYTLTVQATDLEGA----GLSVEGKAIIQITDANDNAPIFDPKTYTALV 236
Query: 973 REDIPVGTVVAILSASDPDLGQ-GGVVRYTIVSDNEADDVFSI----DRLTGTIRVAKPL 1027
E+ +G V LS +D D+ + NE F+I + G + AK L
Sbjct: 237 PEN-EIGFEVQRLSVTDLDMPGTPAWQAVYKIRVNE-GGFFNITTDPESNQGILTTAKGL 294
Query: 1028 DFEKRQVHSLVVRAKD---NGSPPLYSEATLIVEVSDVNENMNAPVFSDFVYQATVKENQ 1084
DFE R+ + L + ++ P S AT+ V V DVNE P F V + V E+
Sbjct: 295 DFELRKQYVLQITVENAEPFSVPLPTSTATVTVTVEDVNEA---PFFVPAVSRVDVSEDL 351
Query: 1085 PIGTSL 1090
G +
Sbjct: 352 SRGEKI 357
Score = 300 bits (771), Expect = 1e-90
Identities = 129/620 (20%), Positives = 220/620 (35%), Gaps = 111/620 (17%)
Query: 376 KPVFDREIYEVDVPETTPVNTPIIRLKVSDADDGKNAQVFLEIVGGNEGGE----FNINP 431
+ +V E P ++++ ++ + +V+ I G F I
Sbjct: 5 HHDWVIPPIKVSENERGPFPKRLVQI---KSNKDRFNKVYYSITGQGADNPPQGVFRIEW 61
Query: 432 ETGMLYTAVTLDAEDKAFYTLTVSAIDQGNAGTRKQSAAKVKVNIVDTNDNDPLFDSPEM 491
ETG + LD E+ Y L+ A+ + G+ + ++ +N++D NDN P F
Sbjct: 62 ETGWMLVTRPLDREEYDKYVLSSHAVSEN--GSPVEEPMEITINVIDQNDNRPKFTQDVF 119
Query: 492 EVSINENEPAGTSVIKVTAKDKDS---GENAYISYSIANLKPVP-----FEIDHFSGVIK 543
S+ E GT V+ V+A D+D N +SYSI P F I+ +GVI
Sbjct: 120 RGSVREGVQPGTQVMAVSATDEDDNIDSLNGVLSYSILKQDPEEPIPNLFTINRETGVIS 179
Query: 544 TT-QVLDYESMRREYILRVRASDWGLPYRRQTEMQLKIKLLDVNDNRPQFEKVDCLGHVP 602
LD E EY L V+A+D E + I++ D NDN P F+ VP
Sbjct: 180 LIGTGLDREK-FPEYTLTVQATDLEGA-GLSVEGKAIIQITDANDNAPIFDPKTYTALVP 237
Query: 603 RNLPIGREIITLSAIDFDA---GNIISYRIVSGNEDGCFAL----DITSGVLSIACDLTD 655
N IG E+ LS D D + + NE G F + + G+L+ A L
Sbjct: 238 EN-EIGFEVQRLSVTDLDMPGTPAWQAVYKIRVNEGGFFNITTDPESNQGILTTAKGLDF 296
Query: 656 VRVNEREINVTATDSAHF-----SDVVRIRINLVSARRIPEPGKTLENDSGGFECKDTGV 710
+ + +T ++ F + + + + N++ F
Sbjct: 297 ELRKQYVLQITVENAEPFSVPLPTSTATVTVTVEDV-----------NEAPFFV------ 339
Query: 711 ARRLTEVLAAAEKNNLRSQSYQEEFAMMPSRYGENVHVPEFFSFPIELQVNESVPLKSTL 770
+ V V E + +
Sbjct: 340 -----------------PAVSR-------------VDVSE------------DLSRGEKI 357
Query: 771 TKIIARDRDLGYNGKLVFGISSGDNDSVFRIDPDSGELKVVGYLDRE----RTSEYTLNI 826
++A+D D KL + I + D ++ D+G + G LDRE + + YT+ +
Sbjct: 358 ISLVAQDPDKQQIQKLSYFIGN-DPARWLTVNKDNGIVTGNGNLDRESEYVKNNTYTVIM 416
Query: 827 TVYDLGKPQKSTSKMLPITILDVNDNPPKFEKSLASFRVTENALNGTVIFKVNATDLDLG 886
V D G + + L + +LDVNDN P + + + +D D+
Sbjct: 417 LVTDDGVSVGTGTGTLILHVLDVNDNGPVPSPRVFTMCDQNPEPQ-----VLTISDADIP 471
Query: 887 DNA-KVVYSLM--TDTQDFAVDSATGSLYVSASLDRERQDLYELKIRASDCDGRNDMYTL 943
N SL +D A + G+ + + + ++ Y + + SD N
Sbjct: 472 PNTYPYKVSLSHGSDLTWKAELDSKGTSMLLSPTQQLKKGDYSIYVLLSD-AQNNPQL-- 528
Query: 944 HADALVRVTIDDINDNAPNF 963
+V T+ A
Sbjct: 529 ---TVVNATVCSCEGKAIKC 545
Score = 297 bits (763), Expect = 1e-89
Identities = 116/585 (19%), Positives = 196/585 (33%), Gaps = 72/585 (12%)
Query: 36 RFTQKDYNVSISENSNSKTYVTPEEKMGIYRGTSEVD----IRFKISSGDRDKFFKAEER 91
+ VS +E + + S D + + I+ A+
Sbjct: 7 DWVIPPIKVSENERGPFPKRLV--------QIKSNKDRFNKVYYSITGQG------ADNP 52
Query: 92 LVGDFWFLLIRTRTGN---TDVLNRERKDKYILHIKATITHRDGKKASYEETTCKVHVNV 148
G F I TG T L+RE DKY+L A + EE ++ +NV
Sbjct: 53 PQGVF---RIEWETGWMLVTRPLDREEYDKYVLSSHAV----SENGSPVEEPM-EITINV 104
Query: 149 LDTNDLNPLFYPTEYEETVPEDLPLHTSILRVSAEDAD---LGRNGEIYYSF------RD 199
+D ND P F + +V E + T ++ VSA D D NG + YS
Sbjct: 105 IDQNDNRPKFTQDVFRGSVREGVQPGTQVMAVSATDEDDNIDSLNGVLSYSILKQDPEEP 164
Query: 200 MNEQFSIHPTSGVVTLTR-PLKYTDRSVHDLVVLGQDRGSVFKGGGKPSSAKLKIKVEQI 258
+ F+I+ +GV++L L + L V D G G K I++
Sbjct: 165 IPNLFTINRETGVISLIGTGLDREKFPEYTLTVQATDLE----GAGLSVEGKAIIQITDA 220
Query: 259 NLYGPEIYVQSL-PDIVEQSYADIYAIVRVVDRDAGIHGEIASLDIVDGDPDGHFRIVPT 317
N P ++ + E + V D D ++ + + G F I
Sbjct: 221 NDNAPIFDPKTYTALVPENEIGFEVQRLSVTDLDMPGTPAWQAVYKIRVNEGGFFNITT- 279
Query: 318 KIDPGTKKKEYNIVVLKLLDREIAPLGYNLTLRAVDK---GTPPRETYKATQVHLVDLND 374
DP + + + K LD E+ Y L + + P + V + D+N+
Sbjct: 280 --DPES--NQGILTTAKGLDFELRKQ-YVLQITVENAEPFSVPLPTSTATVTVTVEDVNE 334
Query: 375 NKPVFDREIYEVDVPETTPVNTPIIRLKVSDADDGKNAQVFLEIVGGNEGGEFNINPETG 434
P F + VDV E II L D D + ++ I G + +N + G
Sbjct: 335 A-PFFVPAVSRVDVSEDLSRGEKIISLVAQDPDKQQIQKLSYFI-GNDPARWLTVNKDNG 392
Query: 435 MLYTAVTLDAEDK----AFYTLTVSAIDQGNAGTRKQSAAKVKVNIVDTNDNDPLFDSPE 490
++ LD E + YT+ + D G + + ++++D NDN P+
Sbjct: 393 IVTGNGNLDRESEYVKNNTYTVIMLVTDDGVSV--GTGTGTLILHVLDVNDNGPVPSPRV 450
Query: 491 MEVSINENEPAGTSVIKVTAKDKDSGENAY-ISYSIAN-LKPVPFEIDHFSGVIKTTQVL 548
+ EP +T D D N Y S+++ G
Sbjct: 451 FTMCDQNPEPQ-----VLTISDADIPPNTYPYKVSLSHGSDLTWKAELDSKGTSMLLSPT 505
Query: 549 DYESMRREYILRVRASDWGLPYRRQTEMQLKIKLLDVNDNRPQFE 593
+ +Y + V SD + + + + +
Sbjct: 506 QQLK-KGDYSIYVLLSDAQNNPQLTV---VNATVCSCEGKAIKCQ 546
Score = 289 bits (743), Expect = 9e-87
Identities = 123/564 (21%), Positives = 207/564 (36%), Gaps = 64/564 (11%)
Query: 156 PLFYPTEYEETVPEDLPLHTSILRVSAEDADLGRNGEIYYSF------RDMNEQFSIHPT 209
+ + + E P ++++ ++ R ++YYS F I
Sbjct: 6 HDWVIPPIKVSENERGPFPKRLVQI---KSNKDRFNKVYYSITGQGADNPPQGVFRIEWE 62
Query: 210 SGVVTLTRPLKYTDRSVHDLVVLGQDRGSVFKGGGKP--SSAKLKIKVEQIN----LYGP 263
+G + +TRPL + + L G P ++ I V N +
Sbjct: 63 TGWMLVTRPLDREEYDKYVLSSHAVS------ENGSPVEEPMEITINVIDQNDNRPKFTQ 116
Query: 264 EIYVQSLPDIVEQSYADIYAIVRV--VDRDAGIHGEIASLD--IVDGDPD----GHFRIV 315
+++ S+ E ++ V D D I L I+ DP+ F I
Sbjct: 117 DVFRGSVR---EGVQPG-TQVMAVSATDEDDNIDSLNGVLSYSILKQDPEEPIPNLFTI- 171
Query: 316 PTKIDPGTKKKEYNI-VVLKLLDREIAPLGYNLTLRAVDKGTPPRETYKATQVHLVDLND 374
+ T I ++ LDRE P Y LT++A D + + D ND
Sbjct: 172 ----NRETGV----ISLIGTGLDREKFPE-YTLTVQATDLEGAGLSVEGKAIIQITDAND 222
Query: 375 NKPVFDREIYEVDVPETTPVNTPIIRLKVSDAD-DGKNAQVFLEIVGGNEGGEFNINPE- 432
N P+FD + Y VPE + RL V+D D G A + + NEGG FNI +
Sbjct: 223 NAPIFDPKTYTALVPENEI-GFEVQRLSVTDLDMPGTPAWQAVYKIRVNEGGFFNITTDP 281
Query: 433 ---TGMLYTAVTLDAEDKAFYTLTVSAIDQGNAGTRKQSA-AKVKVNIVDTNDNDPLFDS 488
G+L TA LD E + Y L ++ + ++ A V V + D N+ P F
Sbjct: 282 ESNQGILTTAKGLDFELRKQYVLQITVENAEPFSVPLPTSTATVTVTVEDVNEA-PFFVP 340
Query: 489 PEMEVSINENEPAGTSVIKVTAKDKDSGENAYISYSIANLKPVPFEIDHFSGVIKTTQVL 548
V ++E+ G +I + A+D D + +SY I N ++ +G++ L
Sbjct: 341 AVSRVDVSEDLSRGEKIISLVAQDPDKQQIQKLSYFIGNDPARWLTVNKDNGIVTGNGNL 400
Query: 549 DYES---MRREYILRVRASDWGLPYRRQTEMQLKIKLLDVNDNRPQFEKVDCLGHVPRNL 605
D ES Y + + +D G+ T L + +LDVNDN P
Sbjct: 401 DRESEYVKNNTYTVIMLVTDDGVSVGTGT-GTLILHVLDVNDNGPVPSPRVFTMCDQNPE 459
Query: 606 PIGREIITLSAIDFDAGN---IISYRIVSGNEDGCFALDITSGVLSIACDLTDVRVNERE 662
P L+ D D + G++ A + G + ++ +
Sbjct: 460 P-----QVLTISDADIPPNTYPYKVSLSHGSDLTWKAELDSKGTSMLLSPTQQLKKGDYS 514
Query: 663 INVTATDSAHFSDVVRIRINLVSA 686
I V +D+ + + + + S
Sbjct: 515 IYVLLSDAQNNPQLTVVNATVCSC 538
Score = 275 bits (705), Expect = 2e-81
Identities = 99/361 (27%), Positives = 158/361 (43%), Gaps = 26/361 (7%)
Query: 745 NVHVPEFFSFPIELQVNESVPLKSTLTKIIARDRD---LGYNGKLVFGISSGD----NDS 797
N + P+F V E V + + + A D D NG L + I D +
Sbjct: 108 NDNRPKFTQDVFRGSVREGVQPGTQVMAVSATDEDDNIDSLNGVLSYSILKQDPEEPIPN 167
Query: 798 VFRIDPDSGELKVVG-YLDRERTSEYTLNITVYDLGKPQKSTSKMLPITILDVNDNPPKF 856
+F I+ ++G + ++G LDRE+ EYTL + DL S I I D NDN P F
Sbjct: 168 LFTINRETGVISLIGTGLDREKFPEYTLTVQATDLEGAGLSVEGKAIIQITDANDNAPIF 227
Query: 857 EKSLASFRVTENALNGTVIFKVNATDLDLG--DNAKVVYSLMTDTQD-FAV----DSATG 909
+ + V EN + G + +++ TDLD+ + VY + + F + +S G
Sbjct: 228 DPKTYTALVPENEI-GFEVQRLSVTDLDMPGTPAWQAVYKIRVNEGGFFNITTDPESNQG 286
Query: 910 SLYVSASLDRERQDLYELKIRASDCDGRNDMYTLHADALVRVTIDDINDNAPNFALPNYS 969
L + LD E + Y L+I + + + + A V VT++D+N+ P F
Sbjct: 287 ILTTAKGLDFELRKQYVLQITVENAEPFSVPL-PTSTATVTVTVEDVNEA-PFFVPAVSR 344
Query: 970 VKVREDIPVGTVVAILSASDPDLGQGGVVRYTIVSDNEADDVFSIDRLTGTIRVAKPLDF 1029
V V ED+ G + L A DPD Q + Y I +D ++++ G + LD
Sbjct: 345 VDVSEDLSRGEKIISLVAQDPDKQQIQKLSYFIGNDP--ARWLTVNKDNGIVTGNGNLDR 402
Query: 1030 EKRQVH----SLVVRAKDNGSPPLYSEATLIVEVSDVNENMNAPVFSDFVYQATVKENQP 1085
E V ++++ D+G TLI+ V DVN+ N PV S V+ + +P
Sbjct: 403 ESEYVKNNTYTVIMLVTDDGVSVGTGTGTLILHVLDVND--NGPVPSPRVFTMCDQNPEP 460
Query: 1086 I 1086
Sbjct: 461 Q 461
Score = 241 bits (618), Expect = 2e-69
Identities = 64/338 (18%), Positives = 124/338 (36%), Gaps = 28/338 (8%)
Query: 744 ENVHVPEFFSFPIELQVNESVPLKSTLTKIIARDRDLGYNGK-LVFGISSGDNDSVFRID 802
N + P F V E+ + ++ D D+ + F I
Sbjct: 220 ANDNAPIFDPKTYTALVPENEI-GFEVQRLSVTDLDMPGTPAWQAVYKIRVNEGGFFNIT 278
Query: 803 PD----SGELKVVGYLDRERTSEYTLNITVYD---LGKPQKSTSKMLPITILDVNDNPPK 855
D G L LD E +Y L ITV + P +++ + +T+ DVN+ P
Sbjct: 279 TDPESNQGILTTAKGLDFELRKQYVLQITVENAEPFSVPLPTSTATVTVTVEDVNE-APF 337
Query: 856 FEKSLASFRVTENALNGTVIFKVNATDLDLGDNAKVVYSLMTDTQD-FAVDSATGSLYVS 914
F +++ V+E+ G I + A D D K+ Y + D V+ G + +
Sbjct: 338 FVPAVSRVDVSEDLSRGEKIISLVAQDPDKQQIQKLSYFIGNDPARWLTVNKDNGIVTGN 397
Query: 915 ASLDRE----RQDLYELKIRASDCDGRNDMYTLHADALVRVTIDDINDNAPNFALPNYSV 970
+LDRE + + Y + + +D + + + + + D+NDN P + +++
Sbjct: 398 GNLDRESEYVKNNTYTVIMLVTD----DGVSVGTGTGTLILHVLDVNDNGPVPSPRVFTM 453
Query: 971 KVREDIPVGTVVAILSASDPDLGQ-GGVVRYTIVSDNEADDVFSIDRLTGTIRVAKPLDF 1029
+ P +L+ SD D+ + ++ ++ + GT + P
Sbjct: 454 CDQNPEPQ-----VLTISDADIPPNTYPYKVSLSHGSDLTW-KAELDSKGTSMLLSPTQQ 507
Query: 1030 EKRQVHSLVVRAKDNGSPPLYSEATLIVEVSDVNENMN 1067
K+ +S+ V D + P + + V
Sbjct: 508 LKKGDYSIYVLLSDAQNNPQLT--VVNATVCSCEGKAI 543
Score = 69.3 bits (170), Expect = 3e-12
Identities = 14/115 (12%), Positives = 34/115 (29%), Gaps = 8/115 (6%)
Query: 744 ENVHVPEFFSFPIELQVNESVPLKSTLTKIIARDRDLGYNG-KLVFGISSGDNDSVFRID 802
N + P + P + D D+ N +S G + +
Sbjct: 439 VNDNGPVPSPRVFTMCDQNPEPQV-----LTISDADIPPNTYPYKVSLSHGSDLTWKAEL 493
Query: 803 PDSGELKVVGYLDRERTSEYTLNITVYDLGKPQKSTSKMLPITILDVNDNPPKFE 857
G ++ + + +Y++ + + D + T + T+ K +
Sbjct: 494 DSKGTSMLLSPTQQLKKGDYSIYVLLSDAQNNPQLTV--VNATVCSCEGKAIKCQ 546
>3q2w_A Cadherin-2; cell adhesion, calcium binding; HET: MAN NAG; 3.20A {Mus
musculus}
Length = 559
Score = 311 bits (798), Expect = 2e-94
Identities = 107/361 (29%), Positives = 160/361 (44%), Gaps = 34/361 (9%)
Query: 755 PIELQVNESVPLKSTLTKIIARDRDLGYNGKLVFGISSGDNDS----VFRIDPDSGELKV 810
PI L N P L +I D N L + ++ D +F I+P SG+L V
Sbjct: 6 PINLPENSRGPFPQELVRI---RSDRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSV 62
Query: 811 VGYLDRERTSEYTLNITVYDLGKPQKSTSKMLPITILDVNDNPPKFEKSLASFRVTENAL 870
LDRE + + L D+ Q + I ++D+NDN P+F + + V E +
Sbjct: 63 TKPLDRELIARFHLRAHAVDINGNQVENPIDIVINVIDMNDNRPEFLHQVWNGSVPEGSK 122
Query: 871 NGTVIFKVNATDLD--LGDNAKVVYSLMTDTQD------FAVDSATGSLY-VSASLDRER 921
GT + V A D D N + Y +++ F +++ TG + V+A LDRE+
Sbjct: 123 PGTYVMTVTAIDADDPNALNGMLRYRILSQAPSTPSPNMFTINNETGDIITVAAGLDREK 182
Query: 922 QDLYELKIRASDCDGRNDMYTLHADALVRVTIDDINDNAPNFALPNYSVKVREDIPVGTV 981
Y L I+A+D +G N Y L A +T+ D+NDN P F + +V E+ V +
Sbjct: 183 VQQYTLIIQATDMEG-NPTYGLSNTATAVITVTDVNDNPPEFTAMTFYGEVPEN-RVDVI 240
Query: 982 VAILSASDPDLGQGGVVR--YTIVSDNEADDVFSI----DRLTGTIRVAKPLDFEKRQVH 1035
VA L+ +D D Y I + F+I + G + V KP+DFE ++
Sbjct: 241 VANLTVTDKDQPHTPAWNAAYRISGGDP-TGRFAILTDPNSNDGLVTVVKPIDFETNRMF 299
Query: 1036 SLVVRAKDNG------SPPLYSEATLIVEVSDVNENMNAPVFSDFVYQATVKENQPIGTS 1089
L V A++ P S AT+ V V DVNEN P F+ +E GT
Sbjct: 300 VLTVAAENQVPLAKGIQHPPQSTATVSVTVIDVNEN---PYFAPNPKIIRQEEGLHAGTM 356
Query: 1090 L 1090
L
Sbjct: 357 L 357
Score = 307 bits (789), Expect = 4e-93
Identities = 117/551 (21%), Positives = 203/551 (36%), Gaps = 60/551 (10%)
Query: 73 IRFKISSGDRDKFFKAEERLVGDFWFLLIRTRTGN---TDVLNRERKDKYILHIKATITH 129
+R+ ++ A++ G F +I +G T L+RE ++ L A
Sbjct: 34 LRYSVTGPG------ADQPPTGIF---IINPISGQLSVTKPLDRELIARFHLRAHAV--- 81
Query: 130 RDGKKASYEETTCKVHVNVLDTNDLNPLFYPTEYEETVPEDLPLHTSILRVSAEDAD--L 187
D E + +NV+D ND P F + +VPE T ++ V+A DAD
Sbjct: 82 -DINGNQVENPI-DIVINVIDMNDNRPEFLHQVWNGSVPEGSKPGTYVMTVTAIDADDPN 139
Query: 188 GRNGEIYYSF------RDMNEQFSIHPTSGVV-TLTRPLKYTDRSVHDLVVLGQDRGSVF 240
NG + Y F+I+ +G + T+ L + L++ D
Sbjct: 140 ALNGMLRYRILSQAPSTPSPNMFTINNETGDIITVAAGLDREKVQQYTLIIQATDMEGNP 199
Query: 241 KGGGKPSSAKLKIKVEQINLYGPEIYVQSLPDIVEQSYAD-IYAIVRVVDRDAGIHGEI- 298
G ++A I V +N PE + V ++ D I A + V D+D
Sbjct: 200 TYGLS-NTATAVITVTDVNDNPPEFTAMTFYGEVPENRVDVIVANLTVTDKDQPHTPAWN 258
Query: 299 ASLDIVDGDPDGHFRIVPTKIDPGTKKKEYNIVVLKLLDREIAPLGYNLTLRAVDKGTPP 358
A+ I GDP G F I+ + + V+K +D E + LT+ A ++
Sbjct: 259 AAYRISGGDPTGRFAILTDP-----NSNDGLVTVVKPIDFETNR-MFVLTVAAENQVPLA 312
Query: 359 RET---YKATQ---VHLVDLNDNKPVFDREIYEVDVPETTPVNTPIIRLKVSDADDGKNA 412
+ ++T V ++D+N+N P F + E T + L D D
Sbjct: 313 KGIQHPPQSTATVSVTVIDVNEN-PYFAPNPKIIRQEEGLHAGTMLTTLTAQDPDRYMQQ 371
Query: 413 QVFLEIVGGNEGGEFNINPETGMLYTAVTLDAED----KAFYTLTVSAIDQGNAGTRKQS 468
+ + + I+P G + T LD E Y T A D G
Sbjct: 372 NIRYTKL-SDPANWLKIDPVNGQITTIAVLDRESPNVKNNIYNATFLASDNGIPP--MSG 428
Query: 469 AAKVKVNIVDTNDNDPLFDSPEMEVSINENEPAGTSVIKVTAKDKDSGENAY-ISYSIAN 527
+++ ++D NDN P E E E + I +TA D D NA ++ +
Sbjct: 429 TGTLQIYLLDINDNAPQVLPQEAETC----ETPEPNSINITALDYDIDPNAGPFAFDLPL 484
Query: 528 LK---PVPFEIDHFSGVIKTTQV-LDYESMRREYILRVRASDWGLPYRRQTEMQLKIKLL 583
+ I+ +G + + + Y + + +D G P + + L++K+
Sbjct: 485 SPVTIKRNWTINRLNGDFAQLNLKIKFLE-AGIYEVPIIITDSGNPPKSNISI-LRVKVC 542
Query: 584 DVNDNRPQFEK 594
+ N +
Sbjct: 543 QCDSNGDCTDV 553
Score = 278 bits (713), Expect = 2e-82
Identities = 101/368 (27%), Positives = 159/368 (43%), Gaps = 32/368 (8%)
Query: 745 NVHVPEFFSFPIELQVNESVPLKSTLTKIIARDRD--LGYNGKLVFGISSGD----NDSV 798
N + PEF V E + + + A D D NG L + I S + ++
Sbjct: 102 NDNRPEFLHQVWNGSVPEGSKPGTYVMTVTAIDADDPNALNGMLRYRILSQAPSTPSPNM 161
Query: 799 FRIDPDSGELKVV-GYLDRERTSEYTLNITVYDLGKPQK---STSKMLPITILDVNDNPP 854
F I+ ++G++ V LDRE+ +YTL I D+ S + IT+ DVNDNPP
Sbjct: 162 FTINNETGDIITVAAGLDREKVQQYTLIIQATDMEGNPTYGLSNTATAVITVTDVNDNPP 221
Query: 855 KFEKSLASFRVTENALNGTVIFKVNATDLDLGDNA--KVVYSLMT--DTQDFAV----DS 906
+F V EN + ++ + TD D Y + T FA+ +S
Sbjct: 222 EFTAMTFYGEVPENRV-DVIVANLTVTDKDQPHTPAWNAAYRISGGDPTGRFAILTDPNS 280
Query: 907 ATGSLYVSASLDRERQDLYELKIRASD--CDGRNDMYTLHADALVRVTIDDINDNAPNFA 964
G + V +D E ++ L + A + + + + A V VT+ D+N+N P FA
Sbjct: 281 NDGLVTVVKPIDFETNRMFVLTVAAENQVPLAKGIQHPPQSTATVSVTVIDVNEN-PYFA 339
Query: 965 LPNYSVKVREDIPVGTVVAILSASDPDLGQGGVVRYTIVSDNEADDVFSIDRLTGTIRVA 1024
++ E + GT++ L+A DPD +RYT +SD + ID + G I
Sbjct: 340 PNPKIIRQEEGLHAGTMLTTLTAQDPDRYMQQNIRYTKLSDP--ANWLKIDPVNGQITTI 397
Query: 1025 KPLDFE----KRQVHSLVVRAKDNGSPPLYSEATLIVEVSDVNENMNAPVFSDFVYQATV 1080
LD E K +++ A DNG PP+ TL + + D+N+ NAP +A
Sbjct: 398 AVLDRESPNVKNNIYNATFLASDNGIPPMSGTGTLQIYLLDIND--NAPQVLP--QEAET 453
Query: 1081 KENQPIGT 1088
E +
Sbjct: 454 CETPEPNS 461
Score = 254 bits (652), Expect = 5e-74
Identities = 102/412 (24%), Positives = 167/412 (40%), Gaps = 43/412 (10%)
Query: 288 VDRDAGIHGEIA---SLDIVDGDPDGHFRIVPTKIDPGTKKKEYNIVVLKLLDREIAPLG 344
+ D + + + D P G F I +P + + V K LDRE+
Sbjct: 24 IRSDRDKNLSLRYSVTGPGADQPPTGIFII-----NPISG----QLSVTKPLDRELIAR- 73
Query: 345 YNLTLRAVDKGTPPRETYKATQVHLVDLNDNKPVFDREIYEVDVPETTPVNTPIIRLKVS 404
++L AVD E ++++D+NDN+P F +++ VPE + T ++ +
Sbjct: 74 FHLRAHAVDINGNQVENPIDIVINVIDMNDNRPEFLHQVWNGSVPEGSKPGTYVMTVTAI 133
Query: 405 DADD--GKNAQVFLEIVGGNEGGE----FNINPETGMLYTAV-TLDAEDKAFYTLTVSAI 457
DADD N + I+ F IN ETG + T LD E YTL + A
Sbjct: 134 DADDPNALNGMLRYRILSQAPSTPSPNMFTINNETGDIITVAAGLDREKVQQYTLIIQAT 193
Query: 458 DQGNAGTRKQSA-AKVKVNIVDTNDNDPLFDSPEMEVSINENEPAGTSVIKVTAKDKDSG 516
D T S A + + D NDN P F + + EN V +T DKD
Sbjct: 194 DMEGNPTYGLSNTATAVITVTDVNDNPPEFTAMTFYGEVPENRV-DVIVANLTVTDKDQP 252
Query: 517 ENAY--ISYSIANLKP-VPFEI----DHFSGVIKTTQVLDYESMRREYILRVRASD---- 565
+Y I+ P F I + G++ + +D+E+ R ++L V A +
Sbjct: 253 HTPAWNAAYRISGGDPTGRFAILTDPNSNDGLVTVVKPIDFET-NRMFVLTVAAENQVPL 311
Query: 566 -WGLPYRRQTEMQLKIKLLDVNDNRPQFEKVDCLGHVPRNLPIGREIITLSAIDFDAG-- 622
G+ + Q+ + + ++DVN+N P F + L G + TL+A D D
Sbjct: 312 AKGIQHPPQSTATVSVTVIDVNEN-PYFAPNPKIIRQEEGLHAGTMLTTLTAQDPDRYMQ 370
Query: 623 NIISYRIVSGNEDGCFALDITSGVLSIACDL----TDVRVNEREINVTATDS 670
I Y +S + +D +G ++ L +V+ N A+D+
Sbjct: 371 QNIRYTKLS-DPANWLKIDPVNGQITTIAVLDRESPNVKNNIYNATFLASDN 421
Score = 253 bits (648), Expect = 2e-73
Identities = 75/355 (21%), Positives = 142/355 (40%), Gaps = 32/355 (9%)
Query: 744 ENVHVPEFFSFPIELQVNESVPLKSTLTKIIARDRDLGYNG--KLVFGISSGDNDSVFRI 801
N + PEF + +V E+ + + D+D + + IS GD F I
Sbjct: 216 VNDNPPEFTAMTFYGEVPENRV-DVIVANLTVTDKDQPHTPAWNAAYRISGGDPTGRFAI 274
Query: 802 DPDS----GELKVVGYLDRERTSEYTLNITVYDLG------KPQKSTSKMLPITILDVND 851
D G + VV +D E + L + + + ++ + +T++DVN+
Sbjct: 275 LTDPNSNDGLVTVVKPIDFETNRMFVLTVAAENQVPLAKGIQHPPQSTATVSVTVIDVNE 334
Query: 852 NPPKFEKSLASFRVTENALNGTVIFKVNATDLDLGDNAKVVYSLMTDTQD-FAVDSATGS 910
NP F + R E GT++ + A D D + Y+ ++D + +D G
Sbjct: 335 NPY-FAPNPKIIRQEEGLHAGTMLTTLTAQDPDRYMQQNIRYTKLSDPANWLKIDPVNGQ 393
Query: 911 LYVSASLDRE----RQDLYELKIRASDCDGRNDMYTLHADALVRVTIDDINDNAPNFALP 966
+ A LDRE + ++Y ASD N + + +++ + DINDNAP
Sbjct: 394 ITTIAVLDRESPNVKNNIYNATFLASD----NGIPPMSGTGTLQIYLLDINDNAPQVLPQ 449
Query: 967 NYSVKVREDIPVGTVVAILSASDPDLGQ-GGVVRYTIV-SDNEADDVFSIDRLTGTI-RV 1023
E ++ ++A D D+ G + + S ++I+RL G ++
Sbjct: 450 EAET--CETPEPNSIN--ITALDYDIDPNAGPFAFDLPLSPVTIKRNWTINRLNGDFAQL 505
Query: 1024 AKPLDFEKRQVHSLVVRAKDNGSPPLYSEATLIVEVSDVNENMNAPVFSDFVYQA 1078
+ F + ++ + + D+G+PP + + L V+V + N +
Sbjct: 506 NLKIKFLEAGIYEVPIIITDSGNPPKSNISILRVKVCQCDS--NGDCTDVHHHHH 558
Score = 210 bits (536), Expect = 2e-58
Identities = 103/490 (21%), Positives = 171/490 (34%), Gaps = 72/490 (14%)
Query: 37 FTQKDYNVSISENSNSKTYVT------PEEKMGIYRGTSEVDIRFKISSGDRDKFFKAEE 90
F + +N S+ E S TYV ++ + +R++I S
Sbjct: 108 FLHQVWNGSVPEGSKPGTYVMTVTAIDADDPNALNG-----MLRYRILSQ--------AP 154
Query: 91 RLVGDFWFLL------IRTRTGNTDVLNRERKDKYILHIKATITHRDGKKASYEETTCKV 144
F + I T L+RE+ +Y L I+A T +G T
Sbjct: 155 STPSPNMFTINNETGDIITVAAG---LDREKVQQYTLIIQA--TDMEGNPTYGLSNTATA 209
Query: 145 HVNVLDTNDLNPLFYPTEYEETVPEDLPLHTSILRVSAEDADLGRNG--EIYYSFRDMNE 202
+ V D ND P F + VPE+ + ++ D D Y +
Sbjct: 210 VITVTDVNDNPPEFTAMTFYGEVPENRV-DVIVANLTVTDKDQPHTPAWNAAYRISGGDP 268
Query: 203 --QFSIHPTS----GVVTLTRPLKYTDRSVHDLVVLGQDRGSVFKGGGKP--SSAKLKIK 254
+F+I G+VT+ +P+ + + L V +++ + KG P S+A + +
Sbjct: 269 TGRFAILTDPNSNDGLVTVVKPIDFETNRMFVLTVAAENQVPLAKGIQHPPQSTATVSVT 328
Query: 255 VEQIN---LYGPEIYVQSLPDIVEQSYADIYAIVRVVDRDAGIHGEIA-SLDIVDGDPDG 310
V +N + P + + + + D D + I + DP
Sbjct: 329 VIDVNENPYFAPNPKIIRQEE--GLHAGTMLTTLTAQDPDRYMQQNIRYTK---LSDPAN 383
Query: 311 HFRIVPTKIDPGTKKKEYNIVVLKLLDREIAPLG---YNLTLRAVDKGTPPRETYKATQV 367
KIDP + I + +LDRE + YN T A D G PP Q+
Sbjct: 384 WL-----KIDPVNGQ----ITTIAVLDRESPNVKNNIYNATFLASDNGIPPMSGTGTLQI 434
Query: 368 HLVDLNDNKPVFDREIYEVDVPETTPVNTPIIRLKVSDADDGKNAQVF---LEIVGGNEG 424
+L+D+NDN P E + ET N+ I D D NA F L +
Sbjct: 435 YLLDINDNAPQVLP--QEAETCETPEPNSINIT--ALDYDIDPNAGPFAFDLPLSPVTIK 490
Query: 425 GEFNINPETG-MLYTAVTLDAEDKAFYTLTVSAIDQGNAGTRKQSAAKVKVNIVDTNDND 483
+ IN G + + + Y + + D GN K + + ++V + + N
Sbjct: 491 RNWTINRLNGDFAQLNLKIKFLEAGIYEVPIIITDSGN--PPKSNISILRVKVCQCDSNG 548
Query: 484 PLFDSPEMEV 493
D
Sbjct: 549 DCTDVHHHHH 558
Score = 167 bits (424), Expect = 9e-44
Identities = 66/372 (17%), Positives = 117/372 (31%), Gaps = 56/372 (15%)
Query: 36 RFTQKDYNVSISENSNSKTYVTPEEKMGIYR-------GTSEVDIRFKISSGDRDKFFKA 88
FT + + EN + + T + ++IS GD F
Sbjct: 222 EFTAMTFYGEVPENR-------VDVIVANLTVTDKDQPHTPAWNAAYRISGGDPTGRFA- 273
Query: 89 EERLVGDFWFLLIRTRTGNTDV---LNRERKDKYILHIKATITHRDGKKASYEET-TCKV 144
++ D + G V ++ E ++L + A K + T V
Sbjct: 274 ---ILTDP-----NSNDGLVTVVKPIDFETNRMFVLTVAAENQVPLAKGIQHPPQSTATV 325
Query: 145 HVNVLDTNDLNPLFYPTEYEETVPEDLPLHTSILRVSAEDADLGRNGEIYYS-FRDMNEQ 203
V V+D N+ NP F P E L T + ++A+D D I Y+ D
Sbjct: 326 SVTVIDVNE-NPYFAPNPKIIRQEEGLHAGTMLTTLTAQDPDRYMQQNIRYTKLSDPANW 384
Query: 204 FSIHPTSGVVTLTRPL----KYTDRSVHDLVVLGQDRGSVFKGGGKPSSAKLKIKVEQIN 259
I P +G +T L ++++ L D G + L+I + IN
Sbjct: 385 LKIDPVNGQITTIAVLDRESPNVKNNIYNATFLASDNGIP----PMSGTGTLQIYLLDIN 440
Query: 260 LYGPEI--YVQSLPDIVEQSYADIYAIVRVVDRDAGIHGEI--ASLDIVDGDPDGHFRIV 315
P++ + E + + +D D + L + ++ I
Sbjct: 441 DNAPQVLPQEAETCETPEPNSI----NITALDYDIDPNAGPFAFDLPLSPVTIKRNWTIN 496
Query: 316 PTKIDPGTKKKEYNIVVLKL-LDREIAPLGYNLTLRAVDKGTPPRETYKATQVHLVDLND 374
G L L + A + Y + + D G PP+ +V + +
Sbjct: 497 RLN---GD------FAQLNLKIKFLEAGI-YEVPIIITDSGNPPKSNISILRVKVCQCDS 546
Query: 375 NKPVFDREIYEV 386
N D +
Sbjct: 547 NGDCTDVHHHHH 558
>3q2v_A Cadherin-1; cell adhesion, calcium binding; HET: MAN; 3.40A {Mus
musculus}
Length = 550
Score = 310 bits (795), Expect = 4e-94
Identities = 128/547 (23%), Positives = 208/547 (38%), Gaps = 62/547 (11%)
Query: 73 IRFKISSGDRDKFFKAEERLVGDFWFLLIRTRTGN---TDVLNRERKDKYILHIKATITH 129
+ + I+ A++ VG F +I TG T L+RE KYIL+ A
Sbjct: 34 VFYSITGQG------ADKPPVGVF---IIERETGWLKVTQPLDREAIAKYILYSHAV--- 81
Query: 130 RDGKKASYEETTCKVHVNVLDTNDLNPLFYPTEYEETVPEDLPLHTSILRVSAEDADLG- 188
+ E+ ++ + V D ND P F +E +V E TS+++VSA DAD
Sbjct: 82 -SSNGEAVEDPM-EIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDV 139
Query: 189 --RNGEIYYSFRD------MNEQFSIHPTSGVV-TLTRPLKYTDRSVHDLVVLGQDRGSV 239
N I Y+ F+++ +GV+ LT L + LVV D
Sbjct: 140 NTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVLTSGLDRESYPTYTLVVQAADLQ-- 197
Query: 240 FKGGGKPSSAKLKIKVEQINLYGPEIYVQSL-PDIVEQSYADIYAIVRVVDRDAGIHGEI 298
G G ++AK I V+ IN P + + E A ++V D DA
Sbjct: 198 --GEGLSTTAKAVITVKDINDNAPVFNPSTYQGQVPENEVNARIATLKVTDDDAPNTPAW 255
Query: 299 ASLDIVDGDPDGHFRIVPTKIDPGTKKKEYNIVVLKLLDREIAPLGYNLTLRAVDKGT-- 356
++ V DPD F +V DP T + + K LD E Y L +R ++
Sbjct: 256 KAVYTVVNDPDQQFVVVT---DPTT--NDGILKTAKGLDFEAKQQ-YILHVRVENEEPFE 309
Query: 357 -PPRETYKATQVHLVDLNDNKPVFDREIYEVDVPETTPVNTPIIRLKVSDADDGKNAQVF 415
+ V +VD+N+ P+F V+VPE V I + D + ++
Sbjct: 310 GSLVPSTATVTVDVVDVNEA-PIFMPAERRVEVPEDFGVGQEITSYTAREPDTFMDQKIT 368
Query: 416 LEIVGGNEGGEFNINPETGMLYTAVTLDAED-----KAFYTLTVSAIDQGNAGTRKQSAA 470
I + INPETG ++T +D ED + Y + A D G+
Sbjct: 369 YRIW-RDTANWLEINPETGAIFTRAEMDREDAEHVKNSTYVALIIATDDGS--PIATGTG 425
Query: 471 KVKVNIVDTNDNDPLFDSPEMEVSINENEPAGTSVIKVTAKDKDSGENAY-ISYSIANLK 529
+ + ++D NDN P+ + M+ +P +T D D N + + +
Sbjct: 426 TLLLVLLDVNDNAPIPEPRNMQFCQRNPQP-----HIITILDPDLPPNTSPFTAELTHGA 480
Query: 530 PVPFEIDHF--SGVIKTTQVLDYESMRREYILRVRASDWGLPYRRQTEMQLKIKLLDVND 587
V + I++ + Q EY + ++ +D + T L + + D
Sbjct: 481 SVNWTIEYNDAAQESLILQPRKDLE-IGEYKIHLKLADNQNKDQVTT---LDVHVCDCEG 536
Query: 588 NRPQFEK 594
K
Sbjct: 537 TVNNCMK 543
Score = 309 bits (793), Expect = 1e-93
Identities = 109/364 (29%), Positives = 165/364 (45%), Gaps = 36/364 (9%)
Query: 750 EFFSFPIELQVNESVPLKSTLTKIIARDRDLGYNGKLVFGISSGDNDS----VFRIDPDS 805
++ PI NE L +I + K+ + I+ D VF I+ ++
Sbjct: 1 DWVIPPISCPENEKGEFPKNLVQI---KSNRDKETKVFYSITGQGADKPPVGVFIIERET 57
Query: 806 GELKVVGYLDRERTSEYTLNITVYDLGKPQKSTSKMLPITILDVNDNPPKFEKSLASFRV 865
G LKV LDRE ++Y L + IT+ D NDN P+F + + V
Sbjct: 58 GWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSV 117
Query: 866 TENALNGTVIFKVNATDLDLG---DNAKVVYSLMTDTQD------FAVDSATGSLYV-SA 915
E A+ GT + KV+ATD D NA + Y++++ + F V+ TG + V ++
Sbjct: 118 AEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVLTS 177
Query: 916 SLDRERQDLYELKIRASDCDGRNDMYTLHADALVRVTIDDINDNAPNFALPNYSVKVRED 975
LDRE Y L ++A+D G L A +T+ DINDNAP F Y +V E+
Sbjct: 178 GLDRESYPTYTLVVQAADLQGE----GLSTTAKAVITVKDINDNAPVFNPSTYQGQVPEN 233
Query: 976 IPVGTVVAILSASDPDLGQGG--VVRYTIVSDNEADDVFSI----DRLTGTIRVAKPLDF 1029
V +A L +D D YT+V+D D F + G ++ AK LDF
Sbjct: 234 -EVNARIATLKVTDDDAPNTPAWKAVYTVVNDP--DQQFVVVTDPTTNDGILKTAKGLDF 290
Query: 1030 EKRQVHSLVVRAKDNG---SPPLYSEATLIVEVSDVNENMNAPVFSDFVYQATVKENQPI 1086
E +Q + L VR ++ + S AT+ V+V DVNE AP+F + V E+ +
Sbjct: 291 EAKQQYILHVRVENEEPFEGSLVPSTATVTVDVVDVNE---APIFMPAERRVEVPEDFGV 347
Query: 1087 GTSL 1090
G +
Sbjct: 348 GQEI 351
Score = 284 bits (729), Expect = 8e-85
Identities = 127/552 (23%), Positives = 218/552 (39%), Gaps = 64/552 (11%)
Query: 166 TVPEDLPLHTSILRVSAEDADLGRNGEIYYS------FRDMNEQFSIHPTSGVVTLTRPL 219
+ PE+ + ++ + +++YS + F I +G + +T+PL
Sbjct: 8 SCPENEKG-EFPKNLVQIKSNRDKETKVFYSITGQGADKPPVGVFIIERETGWLKVTQPL 66
Query: 220 KYTDRSVHDLVVLGQDRGSVFKGGGKP--SSAKLKIKVEQIN----LYGPEIYVQSLPDI 273
+ + L G+ ++ I V N + E++ S+
Sbjct: 67 DREAIAKYILYSHAVS------SNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVA-- 118
Query: 274 VEQSYADIYAIVRV--VDRDAGIHGEIASLD--IVDGDPD----GHFRIVPTKIDPGTKK 325
E + ++++V D D ++ A++ IV DP+ F + + T
Sbjct: 119 -EGAVPG-TSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTV-----NRDTGV 171
Query: 326 KEYNIVVLK-LLDREIAPLGYNLTLRAVDKGTPPRETYKATQVHLVDLNDNKPVFDREIY 384
I VL LDRE P Y L ++A D T + + D+NDN PVF+ Y
Sbjct: 172 ----ISVLTSGLDRESYPT-YTLVVQAADLQGEGLSTTAKAVITVKDINDNAPVFNPSTY 226
Query: 385 EVDVPETTPVNTPIIRLKVSDADDGKNAQVFLE-IVGGNEGGEFNI--NPET--GMLYTA 439
+ VPE N I LKV+D D V + +F + +P T G+L TA
Sbjct: 227 QGQVPENEV-NARIATLKVTDDDAPNTPAWKAVYTVVNDPDQQFVVVTDPTTNDGILKTA 285
Query: 440 VTLDAEDKAFYTLTVSAIDQGN-AGTRKQSAAKVKVNIVDTNDNDPLFDSPEMEVSINEN 498
LD E K Y L V ++ G+ S A V V++VD N+ P+F E V + E+
Sbjct: 286 KGLDFEAKQQYILHVRVENEEPFEGSLVPSTATVTVDVVDVNEA-PIFMPAERRVEVPED 344
Query: 499 EPAGTSVIKVTAKDKDSGENAYISYSIANLKPVPFEIDHFSGVIKTTQVLDYESMRR--- 555
G + TA++ D+ + I+Y I EI+ +G I T +D E
Sbjct: 345 FGVGQEITSYTAREPDTFMDQKITYRIWRDTANWLEINPETGAIFTRAEMDREDAEHVKN 404
Query: 556 -EYILRVRASDWGLPYRRQTEMQLKIKLLDVNDNRPQFEKVDCLGHVPRNLPIGREIITL 614
Y+ + A+D G P T L + LLDVNDN P E + + P +
Sbjct: 405 STYVALIIATDDGSPIATGT-GTLLLVLLDVNDNAPIPEPRNM--QFCQRNPQP---HII 458
Query: 615 SAIDFDAG---NIISYRIVSGN-EDGCFALDITSGVLSIACDLTDVRVNEREINVTATDS 670
+ +D D + + + G + + + I D+ + E +I++ D+
Sbjct: 459 TILDPDLPPNTSPFTAELTHGASVNWTIEYNDAAQESLILQPRKDLEIGEYKIHLKLADN 518
Query: 671 AHFSDVVRIRIN 682
+ V + ++
Sbjct: 519 QNKDQVTTLDVH 530
Score = 280 bits (718), Expect = 3e-83
Identities = 104/362 (28%), Positives = 159/362 (43%), Gaps = 27/362 (7%)
Query: 745 NVHVPEFFSFPIELQVNESVPLKSTLTKIIARDRDLG---YNGKLVFGISSGDNDS---- 797
N + PEF E V E +++ K+ A D D YN + + I S D +
Sbjct: 102 NDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKN 161
Query: 798 VFRIDPDSGELKVV-GYLDRERTSEYTLNITVYDLGKPQKSTSKMLPITILDVNDNPPKF 856
+F ++ D+G + V+ LDRE YTL + DL ST+ IT+ D+NDN P F
Sbjct: 162 MFTVNRDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGLSTTAKAVITVKDINDNAPVF 221
Query: 857 EKSLASFRVTENALNGTVIFKVNATDLDLGDNA--KVVYSLMTDTQD-FAV----DSATG 909
S +V EN + I + TD D + K VY+++ D F V + G
Sbjct: 222 NPSTYQGQVPENEV-NARIATLKVTDDDAPNTPAWKAVYTVVNDPDQQFVVVTDPTTNDG 280
Query: 910 SLYVSASLDRERQDLYELKIRASDCDGRNDMYTLHADALVRVTIDDINDNAPNFALPNYS 969
L + LD E + Y L +R + + + + + A V V + D+N+ AP F
Sbjct: 281 ILKTAKGLDFEAKQQYILHVRVEN-EEPFEGSLVPSTATVTVDVVDVNE-APIFMPAERR 338
Query: 970 VKVREDIPVGTVVAILSASDPDLGQGGVVRYTIVSDNEADDVFSIDRLTGTIRVAKPLDF 1029
V+V ED VG + +A +PD + Y I D + I+ TG I +D
Sbjct: 339 VEVPEDFGVGQEITSYTAREPDTFMDQKITYRIWRDT--ANWLEINPETGAIFTRAEMDR 396
Query: 1030 E-----KRQVHSLVVRAKDNGSPPLYSEATLIVEVSDVNENMNAPVFSDFVYQATVKENQ 1084
E K + ++ A D+GSP TL++ + DVN+ NAP+ Q + Q
Sbjct: 397 EDAEHVKNSTYVALIIATDDGSPIATGTGTLLLVLLDVND--NAPIPEPRNMQFCQRNPQ 454
Query: 1085 PI 1086
P
Sbjct: 455 PH 456
Score = 249 bits (637), Expect = 5e-72
Identities = 70/351 (19%), Positives = 124/351 (35%), Gaps = 32/351 (9%)
Query: 744 ENVHVPEFFSFPIELQVNESVPLKSTLTKIIARDRDLGYNG--KLVFGISSGDNDSVFRI 801
N + P F + QV E+ + + + D D K V+ + D D F +
Sbjct: 214 INDNAPVFNPSTYQGQVPENEV-NARIATLKVTDDDAPNTPAWKAVYTVV-NDPDQQFVV 271
Query: 802 DPDS----GELKVVGYLDRERTSEYTLNITVYDLG---KPQKSTSKMLPITILDVNDNPP 854
D G LK LD E +Y L++ V + ++ + + ++DVN+ P
Sbjct: 272 VTDPTTNDGILKTAKGLDFEAKQQYILHVRVENEEPFEGSLVPSTATVTVDVVDVNE-AP 330
Query: 855 KFEKSLASFRVTENALNGTVIFKVNATDLDLGDNAKVVYSLMTDTQD-FAVDSATGSLYV 913
F + V E+ G I A + D + K+ Y + DT + ++ TG+++
Sbjct: 331 IFMPAERRVEVPEDFGVGQEITSYTAREPDTFMDQKITYRIWRDTANWLEINPETGAIFT 390
Query: 914 SASLDRE-----RQDLYELKIRASDCDGRNDMYTLHADALVRVTIDDINDNAPNFALPNY 968
A +DRE + Y I A+D + + + + D+NDNAP N
Sbjct: 391 RAEMDREDAEHVKNSTYVALIIATD----DGSPIATGTGTLLLVLLDVNDNAPIPEPRNM 446
Query: 969 SVKVREDIPVGTVVAILSASDPDLGQ-GGVVRYTIVSDNEADDVFSIDRLTGTIRVAKPL 1027
R P I++ DPDL + + + + +P
Sbjct: 447 QFCQRNPQPH-----IITILDPDLPPNTSPFTAELTHGASVNWTIEYNDAAQESLILQPR 501
Query: 1028 DFEKRQVHSLVVRAKDNGSPPLYSEATLIVEVSDVNENMNAPVFSDFVYQA 1078
+ + + ++ DN + TL V V D +
Sbjct: 502 KDLEIGEYKIHLKLADNQNKDQ--VTTLDVHVCDCEG--TVNNCMKAHHHH 548
Score = 204 bits (521), Expect = 2e-56
Identities = 93/484 (19%), Positives = 159/484 (32%), Gaps = 76/484 (15%)
Query: 37 FTQKDYNVSISENSNSKTYVTPEEKM-------GIYRGTSEVDIRFKISSGDRDKFFKAE 89
FTQ+ + S++E + T V K+ + + I + I S D
Sbjct: 108 FTQEVFEGSVAEGAVPGTSVM---KVSATDADDDVNTYNAA--IAYTIVSQD-------- 154
Query: 90 ERLVGDFWFLL------IRTRTGNTDVLNRERKDKYILHIKATITHRDGKKASYEETTCK 143
L F + I T L+RE Y L ++A G+ S TT K
Sbjct: 155 PELPHKNMFTVNRDTGVISVLTSG---LDRESYPTYTLVVQA--ADLQGEGLS---TTAK 206
Query: 144 VHVNVLDTNDLNPLFYPTEYEETVPEDLPLHTSILRVSAEDADLGRNGEIYYSFR---DM 200
+ V D ND P+F P+ Y+ VPE+ + I + D D + D
Sbjct: 207 AVITVKDINDNAPVFNPSTYQGQVPENEV-NARIATLKVTDDDAPNTPAWKAVYTVVNDP 265
Query: 201 NEQFSIHPTS----GVVTLTRPLKYTDRSVHDLVVLGQDRGSVFKGGGKPSSAKLKIKVE 256
++QF + G++ + L + + + L V ++ F+G PS+A + + V
Sbjct: 266 DQQFVVVTDPTTNDGILKTAKGLDFEAKQQYILHVRVENEEP-FEGSLVPSTATVTVDVV 324
Query: 257 QIN---LYGPEIYVQSLPDIVEQSYADIYAIVRVVDRDAGIHGEIA-SLDIVDGDPDGHF 312
+N ++ P +P+ + D + +I + D
Sbjct: 325 DVNEAPIFMPAERRVEVPEDFGVGQ--EITSYTAREPDTFMDQKITYRI---WRDTANWL 379
Query: 313 RIVPTKIDPGTKKKEYNIVVLKLLDREIAPLG----YNLTLRAVDKGTPPRETYKATQVH 368
+I+P T I +DRE A Y + A D G+P +
Sbjct: 380 -----EINPETGA----IFTRAEMDREDAEHVKNSTYVALIIATDDGSPIATGTGTLLLV 430
Query: 369 LVDLNDNKPVFDREIYEVDVPETTPVNTPIIRLKVSDADDGKNAQVFL-EIVGGNEG-GE 426
L+D+NDN P+ + + P + + D D N F E+ G
Sbjct: 431 LLDVNDNAPIPEPRNMQFCQRNPQPHI-----ITILDPDLPPNTSPFTAELTHGASVNWT 485
Query: 427 FNINPETGMLYTAVTLDAEDKAFYTLTVSAIDQGNAGTRKQSAAKVKVNIVDTNDNDPLF 486
N + Y + + D N K + V++ D
Sbjct: 486 IEYNDAAQESLILQPRKDLEIGEYKIHLKLADNQN----KDQVTTLDVHVCDCEGTVNNC 541
Query: 487 DSPE 490
Sbjct: 542 MKAH 545
Score = 163 bits (414), Expect = 2e-42
Identities = 59/364 (16%), Positives = 117/364 (32%), Gaps = 52/364 (14%)
Query: 36 RFTQKDYNVSISENSNSKTYVTPEEKMGIYR---------GTSEVDIRFKISSGDRDKFF 86
F Y + EN + I T + + + +F
Sbjct: 220 VFNPSTYQGQVPENEVNAR---------IATLKVTDDDAPNTPAWKAVYTVVNDPDQQFV 270
Query: 87 KAEERLVGDFWFLLIRTRTGNTDVLNRERKDKYILHIKATITHRDGKKASYEETTCKVHV 146
+ D + L+ E K +YILH++ T V V
Sbjct: 271 VVTDPTTNDGILKTAKG-------LDFEAKQQYILHVRVENEEPFEGSLVPSTAT--VTV 321
Query: 147 NVLDTNDLNPLFYPTEYEETVPEDLPLHTSILRVSAEDADLGRNGEIYYS-FRDMNEQFS 205
+V+D N+ P+F P E VPED + I +A + D + +I Y +RD
Sbjct: 322 DVVDVNE-APIFMPAERRVEVPEDFGVGQEITSYTAREPDTFMDQKITYRIWRDTANWLE 380
Query: 206 IHPTSGVVTLTRPL-----KYTDRSVHDLVVLGQDRGSVFKGGGKPSSAKLKIKVEQINL 260
I+P +G + + ++ S + +++ D GS + L + + +N
Sbjct: 381 INPETGAIFTRAEMDREDAEHVKNSTYVALIIATDDGSP----IATGTGTLLLVLLDVND 436
Query: 261 YGPEIYVQSLPDIVEQSYADIYAIVRVVDRDAGIHGEIASLDIVDGDPDGHFRIVPTKID 320
P ++ I+ ++D D + + ++ G ++ I + +
Sbjct: 437 NAPIPE-PRNMQFCQR--NPQPHIITILDPDLPPNTSPFTAELTHG-ASVNWTI---EYN 489
Query: 321 PGTKKKEYNIVVLKLLDREIAPLGYNLTLRAVDKGTPPRETYKATQVHLVDLNDNKPVFD 380
++L+ Y + L+ D + T VH+ D
Sbjct: 490 DAA----QESLILQPRKDLEIGE-YKIHLKLADNQNKDQVTT--LDVHVCDCEGTVNNCM 542
Query: 381 REIY 384
+ +
Sbjct: 543 KAHH 546
Score = 29.6 bits (67), Expect = 6.2
Identities = 8/72 (11%), Positives = 18/72 (25%), Gaps = 10/72 (13%)
Query: 97 WFLLIRTRTGNTDV---LNRERKDKYILHIKATITHRDGKKASYEETTCKVHVNVLDTND 153
W + + + +Y +H+K D + + V+V D
Sbjct: 484 WTIEYNDAAQESLILQPRKDLEIGEYKIHLKLA----DNQNKD---QVTTLDVHVCDCEG 536
Query: 154 LNPLFYPTEYEE 165
+
Sbjct: 537 TVNNCMKAHHHH 548
>3ubh_A Neural-cadherin; cell adhesion; 2.70A {Drosophila melanogaster}
Length = 419
Score = 300 bits (771), Expect = 2e-92
Identities = 88/355 (24%), Positives = 153/355 (43%), Gaps = 34/355 (9%)
Query: 758 LQVNESVPLKSTLTKIIARDRDLGYNGKLVFGISSGDNDSVFRIDPD--------SGELK 809
+V +V +I + D GK VF + + F+I D +G ++
Sbjct: 2 RRVTRAVR---PTKRIEFTEADGDTEGKSVFQLEKETDKETFKIRDDNPWVTVETNGAVR 58
Query: 810 VVGYLDRERTSE------YTLNITVYDLGKPQKSTSKMLPITILDVNDNPPKFEKSLASF 863
V D E + + + + + ++ + I + DVND PP F
Sbjct: 59 VKKKWDYEELGPEKTIDFWVIITNMGHNAGIKYTDNQRVIILVKDVNDEPPYFINRPLPM 118
Query: 864 RVT--ENALNGTVIFKVNATDLDLGDNAKVVYSLMTD--TQDFAVDSATGSLYVSASLDR 919
+ NA T +F + A D D N + Y ++ D F VD +G + +
Sbjct: 119 QAVVQLNAPPNTPVFTLQARDPDTDHN--IHYFIVRDRTGGRFEVDERSGVVRTRGTDLF 176
Query: 920 ERQDLYELKIRASDCDGRNDMYTLHADALVRVTIDDINDNAPNFALPNYSVKVREDIPVG 979
+ Y L ++A D +G+ D + R++I AP F +P+Y ++ E+
Sbjct: 177 QLDMEYVLYVKAEDQNGKVDDRRFQSTPEERLSIVG-GKRAPQFYMPSYEAEIPENQKKD 235
Query: 980 TVVAILSASDPDLGQGGVVRYTIVSDNEADDVFSIDRLTGTIRVAKPLDFEKRQ---VHS 1036
+ + + A + +RYT+ + + F+I +G +++AK LDFE + V+S
Sbjct: 236 SDIISIKAKSFADRE---IRYTLKAQGQGAGTFNIGPTSGIVKLAKELDFEDLRQPHVYS 292
Query: 1037 LVVRAKDNGSPPLYSEATLIVEVSDVNENMNAPVFSDFVYQA-TVKENQPIGTSL 1090
L+V A + S + L + V+DVN+ NAP F YQA V E+ P+GTS+
Sbjct: 293 LIVTATE-DSGGFSTSVDLTIRVTDVND--NAPKFELPDYQAHNVDEDIPLGTSI 344
Score = 270 bits (692), Expect = 4e-81
Identities = 102/489 (20%), Positives = 158/489 (32%), Gaps = 102/489 (20%)
Query: 495 INENEPAGTSVIKVTAKDKDSGENAYISYSIANLKP---------VPFEIDHFSGVIKTT 545
+ ++ + D + + P+ +G ++
Sbjct: 4 VTRAVRPTK---RIEFTEADGDTEGKSVFQLEKETDKETFKIRDDNPWVTVETNGAVRVK 60
Query: 546 QVLDYESMRRE-----YILRVRASDWGLPYRRQTEMQLKIKLLDVNDNRPQFEKVDCL-- 598
+ DYE + E +++ ++ I + DVND P F
Sbjct: 61 KKWDYEELGPEKTIDFWVIITNMGHNAGIKYTDN-QRVIILVKDVNDEPPYFINRPLPMQ 119
Query: 599 GHVPRNLPIGREIITLSAIDFDAGNIISYRIVSGNEDGCFALDITSGVLSIACDLTDVRV 658
V N P + TL A D D + I Y IV G F +D SGV+
Sbjct: 120 AVVQLNAPPNTPVFTLQARDPDTDHNIHYFIVRDRTGGRFEVDERSGVVRTRGTDLFQLD 179
Query: 659 NEREINVTATD------SAHFSDVVRIRINLVSARRIPEPGKTLENDSGGFECKDTGVAR 712
E + V A D F R+++ +
Sbjct: 180 MEYVLYVKAEDQNGKVDDRRFQSTPEERLSI------------VGGK------------- 214
Query: 713 RLTEVLAAAEKNNLRSQSYQEEFAMMPSRYGENVHVPEFFSFPIELQVNESVPLKSTLTK 772
P+F+ E ++ E+ S +
Sbjct: 215 ----------------------------------RAPQFYMPSYEAEIPENQKKDSDIIS 240
Query: 773 IIARDRDLGYNGKLVFGIS-SGDNDSVFRIDPDSGELKVVGYLDRERTSE---YTLNITV 828
I A+ + ++ + + G F I P SG +K+ LD E + Y+L +T
Sbjct: 241 IKAKSFA---DREIRYTLKAQGQGAGTFNIGPTSGIVKLAKELDFEDLRQPHVYSLIVTA 297
Query: 829 YDLGKPQKSTSKMLPITILDVNDNPPKFEKSLAS-FRVTENALNGTVIFKVNATDLDLGD 887
+ STS L I + DVNDN PKFE V E+ GT I +V A D D G
Sbjct: 298 TE-DSGGFSTSVDLTIRVTDVNDNAPKFELPDYQAHNVDEDIPLGTSILRVKAMDSDSGS 356
Query: 888 NAKVVYSLMTDTQDFAVDSATGSLYVSASLDRER-QDLYELKIRASDCDGRNDMYTLHAD 946
NA++ Y + D FAVDS G + + LD + YE + A D
Sbjct: 357 NAEIEYLVSDD--HFAVDS-NGIIVNNKQLDADNNNAYYEFIVTAKD----KGEPPKSGV 409
Query: 947 ALVRVTIDD 955
A VRV +
Sbjct: 410 ATVRVYTKN 418
Score = 268 bits (686), Expect = 3e-80
Identities = 80/331 (24%), Positives = 135/331 (40%), Gaps = 31/331 (9%)
Query: 745 NVHVPEFFS--FPIELQVNESVPLKSTLTKIIARDRDLGYNGKLVFGISSGDNDSVFRID 802
N P F + P++ V + P + + + ARD D +N + I F +D
Sbjct: 105 NDEPPYFINRPLPMQAVVQLNAPPNTPVFTLQARDPDTDHNIH--YFIVRDRTGGRFEVD 162
Query: 803 PDSGELKVVGYLDRERTSEYTLNITVYDLGKPQK----STSKMLPITILDVNDNPPKFEK 858
SG ++ G + EY L + D ++ ++I+ P+F
Sbjct: 163 ERSGVVRTRGTDLFQLDMEYVLYVKAEDQNGKVDDRRFQSTPEERLSIVG-GKRAPQFYM 221
Query: 859 SLASFRVTENALNGTVIFKVNATDLDLGDNAKVVYSLMTDTQD---FAVDSATGSLYVSA 915
+ EN + I + A + ++ Y+L Q F + +G + ++
Sbjct: 222 PSYEAEIPENQKKDSDIISIKAKS---FADREIRYTLKAQGQGAGTFNIGPTSGIVKLAK 278
Query: 916 SLDRE---RQDLYELKIRASDCDGRNDMYTLHADALVRVTIDDINDNAPNFALPNYSV-K 971
LD E + +Y L + A++ G + + + D+NDNAP F LP+Y
Sbjct: 279 ELDFEDLRQPHVYSLIVTATEDSGG-----FSTSVDLTIRVTDVNDNAPKFELPDYQAHN 333
Query: 972 VREDIPVGTVVAILSASDPDLGQGGVVRYTIVSDNEADDVFSIDRLTGTIRVAKPLDFE- 1030
V EDIP+GT + + A D D G + Y + D+ F++D G I K LD +
Sbjct: 334 VDEDIPLGTSILRVKAMDSDSGSNAEIEYLVSDDH-----FAVDS-NGIIVNNKQLDADN 387
Query: 1031 KRQVHSLVVRAKDNGSPPLYSEATLIVEVSD 1061
+ +V AKD G PP AT+ V +
Sbjct: 388 NNAYYEFIVTAKDKGEPPKSGVATVRVYTKN 418
Score = 266 bits (682), Expect = 9e-80
Identities = 98/416 (23%), Positives = 160/416 (38%), Gaps = 32/416 (7%)
Query: 285 VRVVDRDAGIHGEIASLDIVDGDPDGHFRIVPTKIDPGTKKKEYNIVVLKLLDREIAPLG 344
+ + D G+ + F+I T + + V K D E
Sbjct: 14 IEFTEADGDTEGKS-VFQLEKETDKETFKIRDDNPW-VTVETNGAVRVKKKWDYEELGPE 71
Query: 345 -----YNLTLRAVDKGTPPRETYKATQVHLVDLNDNKPVFDRE--IYEVDVPETTPVNTP 397
+ + + + + D+ND P F + V P NTP
Sbjct: 72 KTIDFWVIITNMGHNAGIKYTDNQRVIILVKDVNDEPPYFINRPLPMQAVVQLNAPPNTP 131
Query: 398 IIRLKVSDADDGKNAQVFLEIVGGNEGGEFNINPETGMLYTAVTLDAEDKAFYTLTVSAI 457
+ L+ D D N F IV GG F ++ +G++ T T + Y L V A
Sbjct: 132 VFTLQARDPDTDHNIHYF--IVRDRTGGRFEVDERSGVVRTRGTDLFQLDMEYVLYVKAE 189
Query: 458 DQGNAGTRKQSAAKVKVNI-VDTNDNDPLFDSPEMEVSINENEPAGTSVIKVTAKDKDSG 516
DQ ++ + + + + P F P E I EN+ + +I + AK
Sbjct: 190 DQNGKVDDRRFQSTPEERLSIVGGKRAPQFYMPSYEAEIPENQKKDSDIISIKAKSFADR 249
Query: 517 ENAY-ISYSIANLKPVPFEIDHFSGVIKTTQVLDYESMRRE--YILRVRASDWGLPYRRQ 573
E Y + F I SG++K + LD+E +R+ Y L V A++
Sbjct: 250 EIRYTLKAQGQGA--GTFNIGPTSGIVKLAKELDFEDLRQPHVYSLIVTATE-DSG-GFS 305
Query: 574 TEMQLKIKLLDVNDNRPQFEKVD-CLGHVPRNLPIGREIITLSAIDFDAGN--IISYRIV 630
T + L I++ DVNDN P+FE D +V ++P+G I+ + A+D D+G+ I Y +
Sbjct: 306 TSVDLTIRVTDVNDNAPKFELPDYQAHNVDEDIPLGTSILRVKAMDSDSGSNAEIEYLVS 365
Query: 631 SGNEDGCFALDITSGVLSIACDLTDVRVNER-EINVTATDS---AHFSDV-VRIRI 681
+ FA+D ++G++ L N E VTA D VR+
Sbjct: 366 DDH----FAVD-SNGIIVNNKQLDADNNNAYYEFIVTAKDKGEPPKSGVATVRVYT 416
Score = 242 bits (621), Expect = 3e-71
Identities = 86/453 (18%), Positives = 161/453 (35%), Gaps = 73/453 (16%)
Query: 167 VPEDLPLHTSILRVSAEDADLGRNGEIYYSFR--DMNEQFSIH--------PTSGVVTLT 216
V + R+ +AD G+ + E F I T+G V +
Sbjct: 4 VTRAVR---PTKRIEFTEADGDTEGKSVFQLEKETDKETFKIRDDNPWVTVETNGAVRVK 60
Query: 217 RPL------KYTDRSVHDLVVLGQDRGSVFKGGGKP---SSAKLKIKVEQIN------LY 261
+ ++ + ++ I V+ +N +
Sbjct: 61 KKWDYEELGPEKTIDFWVIITNMGH-------NAGIKYTDNQRVIILVKDVNDEPPYFIN 113
Query: 262 GPEIYVQSLPDIVEQSYADIYAIVRV--VDRDAGIHGEIASLDIVDGDPDGHFRIVPTKI 319
P + + + + D D + IV G F +
Sbjct: 114 RPLPMQAVVQLNAPPN----TPVFTLQARDPDTDHNIHYF---IVRDRTGGRFE-----V 161
Query: 320 DPGTKKKEYNIVVLKLLDREIAPLGYNLTLRAVDKGTPPRETYKATQVHL---VDLNDNK 376
D + + ++ Y L ++A D+ + + +
Sbjct: 162 DERSGV----VRTRGTDLFQLDME-YVLYVKAEDQNGKVDDRRFQSTPEERLSIVGGKRA 216
Query: 377 PVFDREIYEVDVPETTPVNTPIIRLKVSDADDGK-NAQVFLEIVGGNEGGEFNINPETGM 435
P F YE ++PE ++ II +K D + + G G FNI P +G+
Sbjct: 217 PQFYMPSYEAEIPENQKKDSDIISIKAKSFADREIRYTL---KAQGQGAGTFNIGPTSGI 273
Query: 436 LYTAVTLDAEDKA---FYTLTVSAIDQGNAGTRKQSAAKVKVNIVDTNDNDPLFDSPEME 492
+ A LD ED Y+L V+A + + ++ + + + D NDN P F+ P+ +
Sbjct: 274 VKLAKELDFEDLRQPHVYSLIVTATEDSGGFS---TSVDLTIRVTDVNDNAPKFELPDYQ 330
Query: 493 V-SINENEPAGTSVIKVTAKDKDSGENAYISYSIANLKPVPFEIDHFSGVIKTTQVLDYE 551
+++E+ P GTS+++V A D DSG NA I Y +++ F +D +G+I + LD +
Sbjct: 331 AHNVDEDIPLGTSILRVKAMDSDSGSNAEIEYLVSD---DHFAVDS-NGIIVNNKQLDAD 386
Query: 552 SMRREYILRVRASDWGLPYRRQTEMQLKIKLLD 584
+ Y V A D G P + +++ +
Sbjct: 387 NNNAYYEFIVTAKDKGEP-PKSGVATVRVYTKN 418
Score = 224 bits (573), Expect = 9e-65
Identities = 87/419 (20%), Positives = 151/419 (36%), Gaps = 40/419 (9%)
Query: 73 IRFKISSGDRDKFFK--AEERLVGDFWFLLIRTRTGNTDVLNRERKD--KYILHIKATIT 128
F++ + FK + V +R + + E K I
Sbjct: 27 SVFQLEKETDKETFKIRDDNPWVTVETNGAVRVKK----KWDYEELGPEKTIDFWVIITN 82
Query: 129 HRDGKKASYEETTCKVHVNVLDTNDLNPLFY--PTEYEETVPEDLPLHTSILRVSAEDAD 186
Y + +V + V D ND P F P + V + P +T + + A D D
Sbjct: 83 MGHNAGIKYTDNQ-RVIILVKDVNDEPPYFINRPLPMQAVVQLNAPPNTPVFTLQARDPD 141
Query: 187 LGRNGEIYYSFRDMNEQFSIHPTSGVVTLTRPLKYTDRSVHDLVVLGQDRGSVFKGGGKP 246
N + +F + SGVV + + L V +D+
Sbjct: 142 TDHNIHYFIVRDRTGGRFEVDERSGVVRTRGTDLFQLDMEYVLYVKAEDQNGKVDDRRFQ 201
Query: 247 SSAKLKIKVEQINLYGPEIYVQSLPDIV-EQSYAD-IYAIVRVVDRD-AGIHGEIASLDI 303
S+ + ++ + P+ Y+ S + E D ++ I +
Sbjct: 202 STPEERLSIV-GGKRAPQFYMPSYEAEIPENQKKDSDIISIKAKSFADREIRYTL----K 256
Query: 304 VDGDPDGHFRIVPTKIDPGTKKKEYNIVVLKLLDREIAP--LGYNLTLRAVDKGTPPRET 361
G G F I PT + + K LD E Y+L + A + + T
Sbjct: 257 AQGQGAGTFNIGPTS---------GIVKLAKELDFEDLRQPHVYSLIVTATE-DSGGFST 306
Query: 362 YKATQVHLVDLNDNKPVFDREIYEV-DVPETTPVNTPIIRLKVSDADDGKNAQVFLEIVG 420
+ + D+NDN P F+ Y+ +V E P+ T I+R+K D+D G NA++ +
Sbjct: 307 SVDLTIRVTDVNDNAPKFELPDYQAHNVDEDIPLGTSILRVKAMDSDSGSNAEIEYLVSD 366
Query: 421 GNEGGEFNINPETGMLYTAVTLDAED-KAFYTLTVSAIDQGNAGTRKQSAAKVKVNIVD 478
+ F ++ G++ LDA++ A+Y V+A D+G K A V+V +
Sbjct: 367 DH----FAVDS-NGIIVNNKQLDADNNNAYYEFIVTAKDKGEP--PKSGVATVRVYTKN 418
Score = 195 bits (497), Expect = 2e-54
Identities = 67/306 (21%), Positives = 119/306 (38%), Gaps = 34/306 (11%)
Query: 388 VPETTPVNTPIIRLKVSDADDGKNAQVFLEIVGGNEGGEFNINPE--------TGMLYTA 439
V P R++ ++AD + ++ + F I + G +
Sbjct: 4 VTRAVR---PTKRIEFTEADGDTEGKSVFQLEKETDKETFKIRDDNPWVTVETNGAVRVK 60
Query: 440 VTLDAEDKA------FYTLTVSAIDQGNAGTRKQSAAKVKVNIVDTNDNDPLFDSPE--M 491
D E+ F+ + + + +V + + D ND P F + M
Sbjct: 61 KKWDYEELGPEKTIDFWVIITNMGHNAG--IKYTDNQRVIILVKDVNDEPPYFINRPLPM 118
Query: 492 EVSINENEPAGTSVIKVTAKDKDSGENAYISYSIANLKPV-PFEIDHFSGVIKTTQVLDY 550
+ + N P T V + A+D D+ N I Y I + FE+D SGV++T +
Sbjct: 119 QAVVQLNAPPNTPVFTLQARDPDTDHN--IHYFIVRDRTGGRFEVDERSGVVRTRGTDLF 176
Query: 551 ESMRREYILRVRASDWGLP---YRRQTEMQLKIKLLDVNDNRPQFEKVDCLGHVPRNLPI 607
+ EY+L V+A D R Q+ + ++ ++ PQF +P N
Sbjct: 177 QL-DMEYVLYVKAEDQNGKVDDRRFQSTPEERLSIVG-GKRAPQFYMPSYEAEIPENQKK 234
Query: 608 GREIITLSAIDFDAGNIISYRIV-SGNEDGCFALDITSGVLSIACDL---TDVRVNEREI 663
+II++ A F I Y + G G F + TSG++ +A +L + + +
Sbjct: 235 DSDIISIKAKSFADRE-IRYTLKAQGQGAGTFNIGPTSGIVKLAKELDFEDLRQPHVYSL 293
Query: 664 NVTATD 669
VTAT+
Sbjct: 294 IVTATE 299
Score = 189 bits (483), Expect = 1e-52
Identities = 53/247 (21%), Positives = 81/247 (32%), Gaps = 29/247 (11%)
Query: 862 SFRVTENALNGTVIFKVNATDLDLGDNAKVVYSLMTDT----------QDFAVDSATGSL 911
S RVT ++ T+ D K V+ L +T + G++
Sbjct: 1 SRRVTRAVRPTK---RIEFTEADGDTEGKSVFQLEKETDKETFKIRDDNPWVTVETNGAV 57
Query: 912 YVSASLDRERQ------DLYELKIRASDCDGRNDMYTLHADALVRVTIDDINDNAPNFA- 964
V D E D + + N + V + + D+ND P F
Sbjct: 58 RVKKKWDYEELGPEKTIDFWVIITNMGH----NAGIKYTDNQRVIILVKDVNDEPPYFIN 113
Query: 965 -LPNYSVKVREDIPVGTVVAILSASDPDLGQGGVVRYTIVSDNEADDVFSIDRLTGTIRV 1023
V+ + P T V L A DPD + Y IV D F +D +G +R
Sbjct: 114 RPLPMQAVVQLNAPPNTPVFTLQARDPDTDHN--IHYFIVRDR-TGGRFEVDERSGVVRT 170
Query: 1024 AKPLDFEKRQVHSLVVRAKDNGSPPLYSEATLIVEVS-DVNENMNAPVFSDFVYQATVKE 1082
F+ + L V+A+D E + AP F Y+A + E
Sbjct: 171 RGTDLFQLDMEYVLYVKAEDQNGKVDDRRFQSTPEERLSIVGGKRAPQFYMPSYEAEIPE 230
Query: 1083 NQPIGTS 1089
NQ +
Sbjct: 231 NQKKDSD 237
Score = 116 bits (293), Expect = 8e-28
Identities = 70/371 (18%), Positives = 125/371 (33%), Gaps = 97/371 (26%)
Query: 36 RFTQKD--YNVSISENSNSKTYVT------PEEKMGIYRGTSEVDIRFKISSGDRDKFFK 87
F + + N+ T V P+ + +I + I F+
Sbjct: 110 YFINRPLPMQAVVQLNAPPNTPVFTLQARDPDT---------DHNIHYFIVRDRTGGRFE 160
Query: 88 AEERLVGDFWFLLIRTRTG---NTDVLNRERKDKYILHIKATITHRDG---KKASYEETT 141
+ R+G + +Y+L++KA D ++T
Sbjct: 161 -------------VDERSGVVRTRGTDLFQLDMEYVLYVKAE----DQNGKVDDRRFQST 203
Query: 142 CKVHVNVLDTNDLNPLFYPTEYEETVPEDLPLHTSILRVSAEDADLGRNGEIYYSFR--- 198
+ ++++ P FY YE +PE+ + I+ + A+ + EI Y+ +
Sbjct: 204 PEERLSIVG-GKRAPQFYMPSYEAEIPENQKKDSDIISIKAKSFA---DREIRYTLKAQG 259
Query: 199 DMNEQFSIHPTSGVVTLTRPL---KYTDRSVHDLVVLGQDRGSVFKGGGKP--SSAKLKI 253
F+I PTSG+V L + L V+ L+V + +S L I
Sbjct: 260 QGAGTFNIGPTSGIVKLAKELDFEDLRQPHVYSLIVTATE-------DSGGFSTSVDLTI 312
Query: 254 KVEQINLYGPEIYVQSLPDIVEQSYADIYAI------------VRVVDRDAGIHGEIA-S 300
+V +N P+ E + + V+ +D D+G + EI
Sbjct: 313 RVTDVNDNAPKF---------ELPDYQAHNVDEDIPLGTSILRVKAMDSDSGSNAEIEYL 363
Query: 301 LDIVDGDPDGHFRIVPTKIDPGTKKKEYNIVVLKLLDREIAPLGYNLTLRAVDKGTPPRE 360
+ D HF + G IV K LD + Y + A DKG PP+
Sbjct: 364 VS------DDHFAVDSN----GI------IVNNKQLDADNNNAYYEFIVTAKDKGEPPKS 407
Query: 361 TYKATQVHLVD 371
+V+ +
Sbjct: 408 GVATVRVYTKN 418
Score = 108 bits (271), Expect = 5e-25
Identities = 25/137 (18%), Positives = 45/137 (32%), Gaps = 20/137 (14%)
Query: 969 SVKVREDIPVGTVVAILSASDPDLGQGGVVRYTIVSDN-------EADDVFSIDRLTGTI 1021
S +V + + ++ D G + + + D+ + G +
Sbjct: 1 SRRVTRAVRPTKRI---EFTEADGDTEGKSVFQLEKETDKETFKIRDDNPWVTVETNGAV 57
Query: 1022 RVAKPLDFEKRQVHS------LVVRAKDNGSPPLYSEATLIVEVSDVNENMNAPVF--SD 1073
RV K D+E+ ++ N +I+ V DVN+ P F
Sbjct: 58 RVKKKWDYEELGPEKTIDFWVIITNMGHNAGIKYTDNQRVIILVKDVND--EPPYFINRP 115
Query: 1074 FVYQATVKENQPIGTSL 1090
QA V+ N P T +
Sbjct: 116 LPMQAVVQLNAPPNTPV 132
>2a62_A Cadherin-8; extracellular domain, homodimer, calcium binding,
adhesion; 4.50A {Mus musculus}
Length = 322
Score = 288 bits (738), Expect = 6e-89
Identities = 91/316 (28%), Positives = 149/316 (47%), Gaps = 20/316 (6%)
Query: 760 VNESVPLKSTLTKIIARDRDLGYNGKLVFGISSGDNDSVFRIDPDSGELKVVGYLDRERT 819
+ E + L + D D G + K+ + +S ++F+I+ +G++ + LDRE
Sbjct: 10 LEEFSGPEPILVGRLHTDLDPG-SKKIKYILSGDGAGTIFQINDITGDIHAIKRLDREEK 68
Query: 820 SEYTLNITVYDL-GKPQKSTSKMLPITILDVNDNPPKFEKSLASFRVTENALNGTVIFKV 878
+EYTL D I + D+NDN P+F V E ++ GT + V
Sbjct: 69 AEYTLTAQAVDFETNKPLEPPSEFIIKVQDINDNAPEFLNGPYHATVPEMSILGTSVTNV 128
Query: 879 NATDLD---LGDNAKVVYSLMTDTQDFAVDSATGSLYV-SASLDRERQDLYELKIRASDC 934
ATD D G++AK+VYS++ F+++ T + ++DRE ++ Y + I+A D
Sbjct: 129 TATDADDPVYGNSAKLVYSILEGQPYFSIEPETAIIKTALPNMDREAKEEYLVVIQAKDM 188
Query: 935 DGRNDMYTLHADALVRVTIDDINDNAPNFALPNYSVKVREDIPVGTVVAILSASDPDLGQ 994
G L + VT+ D+NDN P FA Y V ED+ +GT + + A+D D+G+
Sbjct: 189 GGH--SGGLSGTTTLTVTLTDVNDNPPKFAQSLYHFSVPEDVVLGTAIGRVKANDQDIGE 246
Query: 995 GGVVRYTIVSDNEADDVFSI----DRLTGTIRVAKPLDFEKRQVHSLVVRAKDNGSP--- 1047
Y I+ + +F I G IR+ KPLDFE ++ ++L V A +
Sbjct: 247 NAQSSYDIIDGDG-TALFEITSDAQAQDGVIRLRKPLDFETKKSYTLKVEAANIHIDPRF 305
Query: 1048 ----PLYSEATLIVEV 1059
P AT+ + V
Sbjct: 306 SSRGPFKDTATVKIVV 321
Score = 211 bits (540), Expect = 2e-61
Identities = 92/301 (30%), Positives = 137/301 (45%), Gaps = 25/301 (8%)
Query: 289 DRDAGIHGEIASLDIVDGDPDGHFRIVPTKIDPGTKKKEYNIVVLKLLDREIAPLGYNLT 348
D D G +I + F+I + T +I +K LDRE Y LT
Sbjct: 27 DLDPG-SKKI-KYILSGDGAGTIFQI-----NDITG----DIHAIKRLDREEKAE-YTLT 74
Query: 349 LRAVDKGT-PPRETYKATQVHLVDLNDNKPVFDREIYEVDVPETTPVNTPIIRLKVSDAD 407
+AVD T P E + + D+NDN P F Y VPE + + T + + +DAD
Sbjct: 75 AQAVDFETNKPLEPPSEFIIKVQDINDNAPEFLNGPYHATVPEMSILGTSVTNVTATDAD 134
Query: 408 D---GKNAQVFLEIVGGNEGGEFNINPETGMLYTAVT-LDAEDKAFYTLTVSAIDQGNAG 463
D G +A++ I+ G F+I PET ++ TA+ +D E K Y + + A D G
Sbjct: 135 DPVYGNSAKLVYSILEGQP--YFSIEPETAIIKTALPNMDREAKEEYLVVIQAKDMGGHS 192
Query: 464 TRKQSAAKVKVNIVDTNDNDPLFDSPEMEVSINENEPAGTSVIKVTAKDKDSGENAYISY 523
+ V + D NDN P F S+ E+ GT++ +V A D+D GENA SY
Sbjct: 193 GGLSGTTTLTVTLTDVNDNPPKFAQSLYHFSVPEDVVLGTAIGRVKANDQDIGENAQSSY 252
Query: 524 SIANLKPV-PFEI----DHFSGVIKTTQVLDYESMRREYILRVRASDWGLPYRRQTEMQL 578
I + FEI GVI+ + LD+E+ + Y L+V A++ + R +
Sbjct: 253 DIIDGDGTALFEITSDAQAQDGVIRLRKPLDFETK-KSYTLKVEAANIHIDPRFSSRGPF 311
Query: 579 K 579
K
Sbjct: 312 K 312
Score = 210 bits (536), Expect = 8e-61
Identities = 73/237 (30%), Positives = 115/237 (48%), Gaps = 17/237 (7%)
Query: 862 SFRVTENALNGTVIFKVNATDLDLGDNAKVVYSLMTD--TQDFAVDSATGSLYVSASLDR 919
F + E + ++ TDLD G + K+ Y L D F ++ TG ++ LDR
Sbjct: 7 MFVLEEFSGPEPILVGRLHTDLDPG-SKKIKYILSGDGAGTIFQINDITGDIHAIKRLDR 65
Query: 920 ERQDLYELKIRASDCDGRNDMYTLHADALVRVTIDDINDNAPNFALPNYSVKVREDIPVG 979
E + Y L +A D + L + + + DINDNAP F Y V E +G
Sbjct: 66 EEKAEYTLTAQAVDFETNKP---LEPPSEFIIKVQDINDNAPEFLNGPYHATVPEMSILG 122
Query: 980 TVVAILSASDPD---LGQGGVVRYTIVSDNEADDVFSIDRLTGTIRVAKP-LDFEKRQVH 1035
T V ++A+D D G + Y+I+ FSI+ T I+ A P +D E ++ +
Sbjct: 123 TSVTNVTATDADDPVYGNSAKLVYSILEGQ---PYFSIEPETAIIKTALPNMDREAKEEY 179
Query: 1036 SLVVRAKDNG--SPPLYSEATLIVEVSDVNENMNAPVFSDFVYQATVKENQPIGTSL 1090
+V++AKD G S L TL V ++DVN+N P F+ +Y +V E+ +GT++
Sbjct: 180 LVVIQAKDMGGHSGGLSGTTTLTVTLTDVNDN--PPKFAQSLYHFSVPEDVVLGTAI 234
Score = 209 bits (534), Expect = 1e-60
Identities = 87/326 (26%), Positives = 139/326 (42%), Gaps = 27/326 (8%)
Query: 377 PVFDREIYEVDVPETTPVNTPIIRLKVSDADDGKNAQVFLEIVGGNEGGEFNINPETGML 436
V++ + E + ++ +D D G + ++ + G G F IN TG +
Sbjct: 2 WVWN---QMFVLEEFSGPEPILVGRLHTDLDPG-SKKIKYILSGDGAGTIFQINDITGDI 57
Query: 437 YTAVTLDAEDKAFYTLTVSAIDQGNAGTRKQSAAKVKVNIVDTNDNDPLFDSPEMEVSIN 496
+ LD E+KA YTLT A+D + ++ + + D NDN P F + ++
Sbjct: 58 HAIKRLDREEKAEYTLTAQAVDFET-NKPLEPPSEFIIKVQDINDNAPEFLNGPYHATVP 116
Query: 497 ENEPAGTSVIKVTAKDKDS---GENAYISYSIANLKPVPFEIDHFSGVIKTTQV-LDYES 552
E GTSV VTA D D G +A + YSI +P F I+ + +IKT +D E+
Sbjct: 117 EMSILGTSVTNVTATDADDPVYGNSAKLVYSILEGQP-YFSIEPETAIIKTALPNMDREA 175
Query: 553 MRREYILRVRASDWG-LPYRRQTEMQLKIKLLDVNDNRPQFEKVDCLGHVPRNLPIGREI 611
+ EY++ ++A D G L + L DVNDN P+F + VP ++ +G I
Sbjct: 176 -KEEYLVVIQAKDMGGHSGGLSGTTTLTVTLTDVNDNPPKFAQSLYHFSVPEDVVLGTAI 234
Query: 612 ITLSAIDFDAGN--IISYRIVSGNEDGCFALDI----TSGVLSIACDLTDVRVNEREINV 665
+ A D D G SY I+ G+ F + GV+ + L + V
Sbjct: 235 GRVKANDQDIGENAQSSYDIIDGDGTALFEITSDAQAQDGVIRLRKPLDFETKKSYTLKV 294
Query: 666 TATDSAH---------FSDVVRIRIN 682
A + F D ++I
Sbjct: 295 EAANIHIDPRFSSRGPFKDTATVKIV 320
Score = 191 bits (487), Expect = 3e-54
Identities = 84/331 (25%), Positives = 131/331 (39%), Gaps = 38/331 (11%)
Query: 166 TVPEDLPLHTSILRVSAEDADLGRNGEIYYSFR--DMNEQFSIHPTSGVVTLTRPLKYTD 223
+ E ++ D D G + +I Y F I+ +G + + L +
Sbjct: 9 VLEEFSGPEPILVGRLHTDLDPG-SKKIKYILSGDGAGTIFQINDITGDIHAIKRLDREE 67
Query: 224 RSVHDLVVLGQDRGSVFKGGGKP--SSAKLKIKVEQINLYGPEIYVQSLPDIV-EQSYAD 280
++ + L D KP ++ IKV+ IN PE V E S
Sbjct: 68 KAEYTLTAQAVDF-----ETNKPLEPPSEFIIKVQDINDNAPEFLNGPYHATVPEMSILG 122
Query: 281 IY-AIVRVVDRDAGIHGEIASLD--IVDGDPDGHFRIVPTKIDPGTKKKEYNI-VVLKLL 336
V D D ++G A L I++G P +F I+P T I L +
Sbjct: 123 TSVTNVTATDADDPVYGNSAKLVYSILEGQP--YF-----SIEPETA----IIKTALPNM 171
Query: 337 DREIAPLGYNLTLRAVDKG--TPPRETYKATQVHLVDLNDNKPVFDREIYEVDVPETTPV 394
DRE Y + ++A D G + V L D+NDN P F + +Y VPE +
Sbjct: 172 DREAKEE-YLVVIQAKDMGGHSGGLSGTTTLTVTLTDVNDNPPKFAQSLYHFSVPEDVVL 230
Query: 395 NTPIIRLKVSDADDGKNAQVFLEIVGGNEGGEF----NINPETGMLYTAVTLDAEDKAFY 450
T I R+K +D D G+NAQ +I+ G+ F + + G++ LD E K Y
Sbjct: 231 GTAIGRVKANDQDIGENAQSSYDIIDGDGTALFEITSDAQAQDGVIRLRKPLDFETKKSY 290
Query: 451 TLTVSAIDQG-----NAGTRKQSAAKVKVNI 476
TL V A + ++ + A VK+ +
Sbjct: 291 TLKVEAANIHIDPRFSSRGPFKDTATVKIVV 321
Score = 169 bits (429), Expect = 2e-46
Identities = 70/226 (30%), Positives = 111/226 (49%), Gaps = 17/226 (7%)
Query: 744 ENVHVPEFFSFPIELQVNESVPLKSTLTKIIARDRD---LGYNGKLVFGISSGDNDSVFR 800
N + PEF + P V E L +++T + A D D G + KLV+ I G F
Sbjct: 99 INDNAPEFLNGPYHATVPEMSILGTSVTNVTATDADDPVYGNSAKLVYSILEGQP--YFS 156
Query: 801 IDPDSGELKV-VGYLDRERTSEYTLNITVYDLGK--PQKSTSKMLPITILDVNDNPPKFE 857
I+P++ +K + +DRE EY + I D+G S + L +T+ DVNDNPPKF
Sbjct: 157 IEPETAIIKTALPNMDREAKEEYLVVIQAKDMGGHSGGLSGTTTLTVTLTDVNDNPPKFA 216
Query: 858 KSLASFRVTENALNGTVIFKVNATDLDLGDNAKVVYSLM--TDTQDFAV----DSATGSL 911
+SL F V E+ + GT I +V A D D+G+NA+ Y ++ T F + + G +
Sbjct: 217 QSLYHFSVPEDVVLGTAIGRVKANDQDIGENAQSSYDIIDGDGTALFEITSDAQAQDGVI 276
Query: 912 YVSASLDRERQDLYELKIRASDCDG---RNDMYTLHADALVRVTID 954
+ LD E + Y LK+ A++ + A V++ ++
Sbjct: 277 RLRKPLDFETKKSYTLKVEAANIHIDPRFSSRGPFKDTATVKIVVE 322
Score = 142 bits (361), Expect = 2e-37
Identities = 76/300 (25%), Positives = 119/300 (39%), Gaps = 41/300 (13%)
Query: 72 DIRFKISSGDRDKFFKAEERLVGDFWFLLIRTRTGN---TDVLNRERKDKYILHIKATIT 128
I++ +S F+ I TG+ L+RE K +Y L +A
Sbjct: 34 KIKYILSGDGAGTIFQ-------------INDITGDIHAIKRLDREEKAEYTLTAQAV-- 78
Query: 129 HRDGKKASYEETTCKVHVNVLDTNDLNPLFYPTEYEETVPEDLPLHTSILRVSAEDAD-- 186
D + E + + V D ND P F Y TVPE L TS+ V+A DAD
Sbjct: 79 --DFETNKPLEPPSEFIIKVQDINDNAPEFLNGPYHATVPEMSILGTSVTNVTATDADDP 136
Query: 187 -LGRNGEIYYSFRDMNEQFSIHPTSGVV-TLTRPLKYTDRSVHDLVVLGQDRGSVFKGGG 244
G + ++ YS + FSI P + ++ T + + + +V+ +D G GG
Sbjct: 137 VYGNSAKLVYSILEGQPYFSIEPETAIIKTALPNMDREAKEEYLVVIQAKDMGG--HSGG 194
Query: 245 KPSSAKLKIKVEQIN----LYGPEIYVQSLPDIVE-QSYADIYAIVRVVDRDAGIHGEIA 299
+ L + + +N + +Y S+P E V+ D+D G + +
Sbjct: 195 LSGTTTLTVTLTDVNDNPPKFAQSLYHFSVP---EDVVLGTAIGRVKANDQDIGENAQS- 250
Query: 300 SLDIVDGDPDGHFRIVPTKIDPGTKKKEYNIVVLKLLDREIAPLGYNLTLRAVDKGTPPR 359
S DI+DGD F I D ++ I + K LD E Y L + A + PR
Sbjct: 251 SYDIIDGDGTALFEIT---SDAQA--QDGVIRLRKPLDFETKKS-YTLKVEAANIHIDPR 304
Score = 123 bits (312), Expect = 5e-31
Identities = 38/125 (30%), Positives = 61/125 (48%), Gaps = 5/125 (4%)
Query: 966 PNYSVKVREDIPVGTVVAILSASDPDLGQGGVVRYTIVSDNEADDVFSIDRLTGTIRVAK 1025
N + E ++ +D D G ++Y + D A +F I+ +TG I K
Sbjct: 4 WNQMFVLEEFSGPEPILVGRLHTDLDPGSKK-IKYILSGDG-AGTIFQINDITGDIHAIK 61
Query: 1026 PLDFEKRQVHSLVVRAKD-NGSPPLYSEATLIVEVSDVNENMNAPVFSDFVYQATVKENQ 1084
LD E++ ++L +A D + PL + I++V D+N+ NAP F + Y ATV E
Sbjct: 62 RLDREEKAEYTLTAQAVDFETNKPLEPPSEFIIKVQDIND--NAPEFLNGPYHATVPEMS 119
Query: 1085 PIGTS 1089
+GTS
Sbjct: 120 ILGTS 124
Score = 113 bits (286), Expect = 1e-27
Identities = 59/240 (24%), Positives = 93/240 (38%), Gaps = 43/240 (17%)
Query: 37 FTQKDYNVSISENSNSKTYVTPEEKMGIYRGTSEVDIRFKISSGDRDKFFKAEERLV--- 93
F Y+ ++ E S T VT +++ D D +
Sbjct: 106 FLNGPYHATVPEMSILGTSVT------------------NVTATDADDPVYGNSAKLVYS 147
Query: 94 ---GDFWFLLIRTRTGN----TDVLNRERKDKYILHIKATITHRDGKKASYE-ETTCKVH 145
G +F I T ++RE K++Y++ I+A D S T +
Sbjct: 148 ILEGQPYFS-IEPETAIIKTALPNMDREAKEEYLVVIQAK----DMGGHSGGLSGTTTLT 202
Query: 146 VNVLDTNDLNPLFYPTEYEETVPEDLPLHTSILRVSAEDADLGRNGEIYYSFRDMNEQ-- 203
V + D ND P F + Y +VPED+ L T+I RV A D D+G N + Y D +
Sbjct: 203 VTLTDVNDNPPKFAQSLYHFSVPEDVVLGTAIGRVKANDQDIGENAQSSYDIIDGDGTAL 262
Query: 204 FSIH----PTSGVVTLTRPLKYTDRSVHDLVVLGQDRGSVFKGGGKP---SSAKLKIKVE 256
F I GV+ L +PL + + + L V + + + +A +KI VE
Sbjct: 263 FEITSDAQAQDGVIRLRKPLDFETKKSYTLKVEAANIHIDPRFSSRGPFKDTATVKIVVE 322
>3ubf_A Neural-cadherin; cell adhesion; 2.50A {Drosophila melanogaster} PDB:
3ubg_A
Length = 316
Score = 276 bits (708), Expect = 7e-85
Identities = 72/314 (22%), Positives = 130/314 (41%), Gaps = 24/314 (7%)
Query: 771 TKIIARDRDLGYNGKLVFGISSGDNDSVFRIDPD--------SGELKVVGYLDRERTSE- 821
+I + D GK VF + + F+I D +G ++V D E
Sbjct: 7 KRIEFTEADGDTEGKSVFQLEKETDKETFKIRDDNPWVTVETNGAVRVKKKWDYEELGPE 66
Query: 822 -----YTLNITVYDLGKPQKSTSKMLPITILDVNDNPPKFEKSLASFR--VTENALNGTV 874
+ + + + + ++ + I + DVND PP F + V NA T
Sbjct: 67 KTIDFWVIITNMGHNAGIKYTDNQRVIILVKDVNDEPPYFINRPLPMQAVVQLNAPPNTP 126
Query: 875 IFKVNATDLDLGDNAKVVYSLMTDTQDFAVDSATGSLYVSASLDRERQDLYELKIRASDC 934
+F + A D D N F VD +G + + + Y L ++A D
Sbjct: 127 VFTLQARDPDTDHNIHYFIVRDRTGGRFEVDERSGVVRTRGTDLFQLDMEYVLYVKAEDQ 186
Query: 935 DGRNDMYTLHADALVRVTIDDINDNAPNFALPNYSVKVREDIPVGTVVAILSASDPDLGQ 994
+G+ D + R++I AP F +P+Y ++ E+ + + + A +
Sbjct: 187 NGKVDDRRFQSTPEERLSIVG-GKRAPQFYMPSYEAEIPENQKKDSDIISIKAKSFADRE 245
Query: 995 GGVVRYTIVSDNEADDVFSIDRLTGTIRVAKPLDFEKRQ---VHSLVVRAKDNGSPPLYS 1051
+RYT+ + + F+I +G +++AK LDFE + V+SL+V A ++ +
Sbjct: 246 ---IRYTLKAQGQGAGTFNIGPTSGIVKLAKELDFEDLRQPHVYSLIVTATEDS-GGFST 301
Query: 1052 EATLIVEVSDVNEN 1065
L + V+DVN+N
Sbjct: 302 SVDLTIRVTDVNDN 315
Score = 233 bits (596), Expect = 4e-69
Identities = 76/320 (23%), Positives = 118/320 (36%), Gaps = 29/320 (9%)
Query: 285 VRVVDRDAGIHGEIASLDIVDGDPDGHFRIVPTK---IDPGTKKKEYNIVVLKLLDREIA 341
+ + D G+ + F+I + V K D E
Sbjct: 9 IEFTEADGDTEGKS-VFQLEKETDKETFKIRDDNPWVTVETNG----AVRVKKKWDYEEL 63
Query: 342 PLG-----YNLTLRAVDKGTPPRETYKATQVHLVDLNDNKPVFDRE--IYEVDVPETTPV 394
+ + + + + D+ND P F + V P
Sbjct: 64 GPEKTIDFWVIITNMGHNAGIKYTDNQRVIILVKDVNDEPPYFINRPLPMQAVVQLNAPP 123
Query: 395 NTPIIRLKVSDADDGKNAQVFLEIVGGNEGGEFNINPETGMLYTAVTLDAEDKAFYTLTV 454
NTP+ L+ D D N F IV GG F ++ +G++ T T + Y L V
Sbjct: 124 NTPVFTLQARDPDTDHNIHYF--IVRDRTGGRFEVDERSGVVRTRGTDLFQLDMEYVLYV 181
Query: 455 SAIDQGN--AGTRKQSAAKVKVNIVDTNDNDPLFDSPEMEVSINENEPAGTSVIKVTAKD 512
A DQ R QS + +++IV P F P E I EN+ + +I + AK
Sbjct: 182 KAEDQNGKVDDRRFQSTPEERLSIVG-GKRAPQFYMPSYEAEIPENQKKDSDIISIKAKS 240
Query: 513 KDSGENAYISYSIANLKPV--PFEIDHFSGVIKTTQVLDYESMRRE--YILRVRASDWGL 568
E I Y++ F I SG++K + LD+E +R+ Y L V A++
Sbjct: 241 FADRE---IRYTLKAQGQGAGTFNIGPTSGIVKLAKELDFEDLRQPHVYSLIVTATEDSG 297
Query: 569 PYRRQTEMQLKIKLLDVNDN 588
T + L I++ DVNDN
Sbjct: 298 G--FSTSVDLTIRVTDVNDN 315
Score = 193 bits (493), Expect = 3e-55
Identities = 65/312 (20%), Positives = 120/312 (38%), Gaps = 30/312 (9%)
Query: 397 PIIRLKVSDADDGKNAQVFLEIVGGNEGGEFNINPE--------TGMLYTAVTLDAEDKA 448
P R++ ++AD + ++ + F I + G + D E+
Sbjct: 5 PTKRIEFTEADGDTEGKSVFQLEKETDKETFKIRDDNPWVTVETNGAVRVKKKWDYEELG 64
Query: 449 ------FYTLTVSAIDQGNAGTRKQSAAKVKVNIVDTNDNDPLFDSPEM--EVSINENEP 500
F+ + + +V + + D ND P F + + + + N P
Sbjct: 65 PEKTIDFWVIITNMGHNAGIK--YTDNQRVIILVKDVNDEPPYFINRPLPMQAVVQLNAP 122
Query: 501 AGTSVIKVTAKDKDSGENAYISYSIANLKPVPFEIDHFSGVIKTTQVLDYESMRREYILR 560
T V + A+D D+ N + FE+D SGV++T ++ EY+L
Sbjct: 123 PNTPVFTLQARDPDTDHNIHYFIVRDRTGG-RFEVDERSGVVRTRGTDLFQL-DMEYVLY 180
Query: 561 VRASDWGLPYR---RQTEMQLKIKLLDVNDNRPQFEKVDCLGHVPRNLPIGREIITLSAI 617
V+A D Q+ + ++ ++ PQF +P N +II++ A
Sbjct: 181 VKAEDQNGKVDDRRFQSTPEERLSIVG-GKRAPQFYMPSYEAEIPENQKKDSDIISIKAK 239
Query: 618 DFDAGNIISYRIV-SGNEDGCFALDITSGVLSIACDL---TDVRVNEREINVTATDSAH- 672
F I Y + G G F + TSG++ +A +L + + + VTAT+ +
Sbjct: 240 SFADRE-IRYTLKAQGQGAGTFNIGPTSGIVKLAKELDFEDLRQPHVYSLIVTATEDSGG 298
Query: 673 FSDVVRIRINLV 684
FS V + I +
Sbjct: 299 FSTSVDLTIRVT 310
Score = 192 bits (491), Expect = 6e-55
Identities = 49/238 (20%), Positives = 79/238 (33%), Gaps = 32/238 (13%)
Query: 875 IFKVNATDLDLGDNAKVVYSLMTDT----------QDFAVDSATGSLYVSASLDRERQ-- 922
++ T+ D K V+ L +T + G++ V D E
Sbjct: 6 TKRIEFTEADGDTEGKSVFQLEKETDKETFKIRDDNPWVTVETNGAVRVKKKWDYEELGP 65
Query: 923 ----DLYELKIRASDCDGRNDMYTLHADALVRVTIDDINDNAPNFALP--NYSVKVREDI 976
D + + N + V + + D+ND P F V+ +
Sbjct: 66 EKTIDFWVIITNMGH----NAGIKYTDNQRVIILVKDVNDEPPYFINRPLPMQAVVQLNA 121
Query: 977 PVGTVVAILSASDPDLGQGGVVRYTIVSDNEADDVFSIDRLTGTIRVAKPLDFEKRQVHS 1036
P T V L A DPD + Y IV D F +D +G +R F+ +
Sbjct: 122 PPNTPVFTLQARDPDTDHN--IHYFIVRDRT-GGRFEVDERSGVVRTRGTDLFQLDMEYV 178
Query: 1037 LVVRAKDNGSPP----LYSEATLIVEVSDVNENMNAPVFSDFVYQATVKENQPIGTSL 1090
L V+A+D S + + AP F Y+A + ENQ + +
Sbjct: 179 LYVKAEDQNGKVDDRRFQSTPEERLSIVGGK---RAPQFYMPSYEAEIPENQKKDSDI 233
Score = 179 bits (456), Expect = 3e-50
Identities = 53/333 (15%), Positives = 110/333 (33%), Gaps = 50/333 (15%)
Query: 177 ILRVSAEDADLGRNGEIYYSFRDMNEQ----------FSIHPTSGVVTLTRPL------K 220
R+ +AD G+ + ++ + T+G V + +
Sbjct: 6 TKRIEFTEADGDTEGKSVFQLEKETDKETFKIRDDNPWVTVETNGAVRVKKKWDYEELGP 65
Query: 221 YTDRSVHDLVVLGQDRGSVFKGGGKPSSAKLKIKVEQINLYGPEIYVQSLP---DIVEQS 277
++ G + ++ I V+ +N P + LP + +
Sbjct: 66 EKTIDFWVIITNMGHNA----GIKYTDNQRVIILVKDVNDEPPYFINRPLPMQAVVQLNA 121
Query: 278 YAD-IYAIVRVVDRDAGIHGEIASLDIVDGDPDGHFRIVPTKIDPGTKKKEYNIVVLKLL 336
+ ++ D D + IV G F + ++ +
Sbjct: 122 PPNTPVFTLQARDPDTDHNIHYF---IVRDRTGGRFEV---------DERSGVVRTRGTD 169
Query: 337 DREIAPLGYNLTLRAVDKGTPPRETYKATQVHL---VDLNDNKPVFDREIYEVDVPETTP 393
++ Y L ++A D+ + + + P F YE ++PE
Sbjct: 170 LFQLDME-YVLYVKAEDQNGKVDDRRFQSTPEERLSIVGGKRAPQFYMPSYEAEIPENQK 228
Query: 394 VNTPIIRLKVSDADDGKNAQVFLEIV-GGNEGGEFNINPETGMLYTAVTLDAED---KAF 449
++ II +K + ++ + G G FNI P +G++ A LD ED
Sbjct: 229 KDSDIISIKAKSFA---DREIRYTLKAQGQGAGTFNIGPTSGIVKLAKELDFEDLRQPHV 285
Query: 450 YTLTVSAIDQGNAGTRKQSAAKVKVNIVDTNDN 482
Y+L V+A + + ++ + + + D NDN
Sbjct: 286 YSLIVTATEDSGGFS---TSVDLTIRVTDVNDN 315
Score = 177 bits (451), Expect = 2e-49
Identities = 45/226 (19%), Positives = 87/226 (38%), Gaps = 23/226 (10%)
Query: 747 HVPEFFSFPIELQ--VNESVPLKSTLTKIIARDRDLGYNGKLVFGISSGDNDSVFRIDPD 804
P F + P+ +Q V + P + + + ARD D +N + I F +D
Sbjct: 102 EPPYFINRPLPMQAVVQLNAPPNTPVFTLQARDPDTDHNIH--YFIVRDRTGGRFEVDER 159
Query: 805 SGELKVVGYLDRERTSEYTLNITVYDLGKP----QKSTSKMLPITILDVNDNPPKFEKSL 860
SG ++ G + EY L + D + ++ ++I+ P+F
Sbjct: 160 SGVVRTRGTDLFQLDMEYVLYVKAEDQNGKVDDRRFQSTPEERLSIVG-GKRAPQFYMPS 218
Query: 861 ASFRVTENALNGTVIFKVNATDLDLGDNAKVVYSLMTDTQD---FAVDSATGSLYVSASL 917
+ EN + I + A + ++ Y+L Q F + +G + ++ L
Sbjct: 219 YEAEIPENQKKDSDIISIKAKSF---ADREIRYTLKAQGQGAGTFNIGPTSGIVKLAKEL 275
Query: 918 DRE---RQDLYELKIRASDCDGRNDMYTLHADALVRVTIDDINDNA 960
D E + +Y L + A++ G + + + D+NDNA
Sbjct: 276 DFEDLRQPHVYSLIVTATEDSGG-----FSTSVDLTIRVTDVNDNA 316
Score = 125 bits (315), Expect = 2e-31
Identities = 40/206 (19%), Positives = 65/206 (31%), Gaps = 23/206 (11%)
Query: 501 AGTSVIKVTAKDKDSGENAYISYSIAN---------LKPVPFEIDHFSGVIKTTQVLDYE 551
A ++ + D + + P+ +G ++ + DYE
Sbjct: 2 AVRPTKRIEFTEADGDTEGKSVFQLEKETDKETFKIRDDNPWVTVETNGAVRVKKKWDYE 61
Query: 552 SMRRE-----YILRVRASDWGLPYRRQTEMQLKIKLLDVNDNRPQFEKVDCL--GHVPRN 604
+ E +++ ++ I + DVND P F V N
Sbjct: 62 ELGPEKTIDFWVIITNMGHNAGIKYTDN-QRVIILVKDVNDEPPYFINRPLPMQAVVQLN 120
Query: 605 LPIGREIITLSAIDFDAGNIISYRIVSGNEDGCFALDITSGVLSIACDLTDVRVNEREIN 664
P + TL A D D + I Y IV G F +D SGV+ E +
Sbjct: 121 APPNTPVFTLQARDPDTDHNIHYFIVRDRTGGRFEVDERSGVVRTRGTDLFQLDMEYVLY 180
Query: 665 VTATD------SAHFSDVVRIRINLV 684
V A D F R+++V
Sbjct: 181 VKAEDQNGKVDDRRFQSTPEERLSIV 206
Score = 122 bits (307), Expect = 2e-30
Identities = 53/320 (16%), Positives = 97/320 (30%), Gaps = 41/320 (12%)
Query: 72 DIRFKISSGDRDKFFKAEERLVGDFWFLLIRTRTGN---TDVLNRERKDK------YILH 122
F++ + FK + D + G + E +++
Sbjct: 21 KSVFQLEKETDKETFK-----IRDDNPWVTVETNGAVRVKKKWDYEELGPEKTIDFWVII 75
Query: 123 IKATITHRDGKKASYEETTCKVHVNVLDTNDLNPLFYPTE--YEETVPEDLPLHTSILRV 180
+V + V D ND P F + V + P +T + +
Sbjct: 76 TNMGHNAGIKYTD-----NQRVIILVKDVNDEPPYFINRPLPMQAVVQLNAPPNTPVFTL 130
Query: 181 SAEDADLGRNGEIYYSFRDMNEQFSIHPTSGVVTLTRPLKYTDRSVHDLVVLGQDRGSVF 240
A D D N + +F + SGVV + + L V +D+
Sbjct: 131 QARDPDTDHNIHYFIVRDRTGGRFEVDERSGVVRTRGTDLFQLDMEYVLYVKAEDQNGKV 190
Query: 241 KGGGKPSSAKLKIKVEQINLYGPEIYVQS-LPDIVEQSYADIY-AIVRVVDRDAG-IHGE 297
S+ + ++ + P+ Y+ S +I E D ++ I
Sbjct: 191 DDRRFQSTPEERLSIV-GGKRAPQFYMPSYEAEIPENQKKDSDIISIKAKSFADREIRYT 249
Query: 298 IASLDIVDGDPDGHFRIVPTKIDPGTKKKEYNIVVLKLLDREIAP--LGYNLTLRAVDKG 355
+ + G G F I P + + + K LD E Y+L + A +
Sbjct: 250 LKA----QGQGAGTFN-----IGPTSG----IVKLAKELDFEDLRQPHVYSLIVTATEDS 296
Query: 356 TPPRETYKATQVHLVDLNDN 375
T + + D+NDN
Sbjct: 297 -GGFSTSVDLTIRVTDVNDN 315
Score = 111 bits (280), Expect = 7e-27
Identities = 45/240 (18%), Positives = 88/240 (36%), Gaps = 47/240 (19%)
Query: 36 RFTQKD--YNVSISENSNSKTYVTPEEKMGIYRGT-----SEVDIRFKISSGDRDKFFKA 88
F + + N+ T V ++ +I + I F+
Sbjct: 105 YFINRPLPMQAVVQLNAPPNTPVF--------TLQARDPDTDHNIHYFIVRDRTGGRFE- 155
Query: 89 EERLVGDFWFLLIRTRTGN---TDVLNRERKDKYILHIKATITHRDGKKASYEETTCKVH 145
+ R+G + +Y+L++KA + + ++T +
Sbjct: 156 ------------VDERSGVVRTRGTDLFQLDMEYVLYVKAEDQNGKVDDRRF-QSTPEER 202
Query: 146 VNVLDTNDLNPLFYPTEYEETVPEDLPLHTSILRVSAEDADLGRNGEIYYSFR---DMNE 202
++++ P FY YE +PE+ + I+ + A+ + EI Y+ +
Sbjct: 203 LSIVG-GKRAPQFYMPSYEAEIPENQKKDSDIISIKAKSFA---DREIRYTLKAQGQGAG 258
Query: 203 QFSIHPTSGVVTLTRPLKY---TDRSVHDLVVLGQDRGSVFKGGGKPSSAKLKIKVEQIN 259
F+I PTSG+V L + L + V+ L+V + GG +S L I+V +N
Sbjct: 259 TFNIGPTSGIVKLAKELDFEDLRQPHVYSLIVTATED-----SGGFSTSVDLTIRVTDVN 313
Score = 87.4 bits (217), Expect = 1e-18
Identities = 30/112 (26%), Positives = 49/112 (43%), Gaps = 8/112 (7%)
Query: 745 NVHVPEFFSFPIELQVNESVPLKSTLTKIIARDRDLGYNGKLVFGIS-SGDNDSVFRIDP 803
P+F+ E ++ E+ S + I A+ + ++ + + G F I P
Sbjct: 208 GKRAPQFYMPSYEAEIPENQKKDSDIISIKAKSFA---DREIRYTLKAQGQGAGTFNIGP 264
Query: 804 DSGELKVVGYLDRERTSE---YTLNITVYDLGKPQKSTSKMLPITILDVNDN 852
SG +K+ LD E + Y+L +T + STS L I + DVNDN
Sbjct: 265 TSGIVKLAKELDFEDLRQPHVYSLIVTATEDS-GGFSTSVDLTIRVTDVNDN 315
Score = 35.8 bits (83), Expect = 0.065
Identities = 25/129 (19%), Positives = 38/129 (29%), Gaps = 38/129 (29%)
Query: 36 RFTQKDYNVSISENSNSKTYVTPEEKMGIYRGTSEVDIRFKISSGDRDK-----FFKAEE 90
+F Y I EN + + I + KA+
Sbjct: 213 QFYMPSYEAEIPENQKKDSDI------------------ISIKAKSFADREIRYTLKAQG 254
Query: 91 RLVGDFWFLLIRTRTGN---TDVLNRE---RKDKYILHIKATITHRDGKKASYEETTCKV 144
+ G F I +G L+ E + Y L + AT D S T+ +
Sbjct: 255 QGAGTFN---IGPTSGIVKLAKELDFEDLRQPHVYSLIVTAT---EDSGGFS---TSVDL 305
Query: 145 HVNVLDTND 153
+ V D ND
Sbjct: 306 TIRVTDVND 314
>3mvs_A Cadherin-23, otocadherin; adhesion, extracellular domain, cell
adhesion; 1.10A {Mus musculus} PDB: 2wcp_A 2whv_A 2wd0_A
2wbx_A
Length = 210
Score = 225 bits (576), Expect = 6e-68
Identities = 66/221 (29%), Positives = 111/221 (50%), Gaps = 18/221 (8%)
Query: 850 NDNPPKFEKSL--ASFRVTENALNGTVIFKVNATDLDLGDNAKVVYSLMTDTQD--FAVD 905
+ P F ++E+ G+ + ++ A D+D N +V+ + + FAV+
Sbjct: 2 VNRLPFFTNHFFDTYLLISEDTPVGSSVTQLLARDMD---NDPLVFGVSGEEASRFFAVE 58
Query: 906 SATGSLYVSASLDRERQDLYELKIRASDCDGRNDMYTLHADALVRVTIDDINDNAPNFAL 965
TG +++ LDRE + + ++ SD G V + + D+NDNAP F
Sbjct: 59 PDTGVVWLRQPLDRETKSEFTVEFSVSDHQG-------VITRKVNIQVGDVNDNAPTFHN 111
Query: 966 PNYSVKVREDIPVGTVVAILSASDPDLGQGGVVRYTIVSDNEADDVFSIDRLTGTIRVAK 1025
YSV++ E+ PVGT + I++A+DPDLG GG V Y+ + F+ID G + V +
Sbjct: 112 QPYSVRIPENTPVGTPIFIVNATDPDLGAGGSVLYSFQPPS---PFFAIDSARGIVTVIQ 168
Query: 1026 PLDFEKRQVHSLVVRAKDNG-SPPLYSEATLIVEVSDVNEN 1065
LD+E Q + L V A D + PL + A L + ++D+ +
Sbjct: 169 ELDYEVTQAYQLTVNATDQDKTRPLSTLANLAIIITDMQDM 209
Score = 221 bits (566), Expect = 2e-66
Identities = 77/218 (35%), Positives = 114/218 (52%), Gaps = 11/218 (5%)
Query: 744 ENVHVPEFF--SFPIELQVNESVPLKSTLTKIIARDRDLGYNGKLVFGISSGDNDSVFRI 801
+ +P F F L ++E P+ S++T+++ARD D N LVFG+S + F +
Sbjct: 1 QVNRLPFFTNHFFDTYLLISEDTPVGSSVTQLLARDMD---NDPLVFGVSGEEASRFFAV 57
Query: 802 DPDSGELKVVGYLDRERTSEYTLNITVYDLGKPQKSTSKMLPITILDVNDNPPKFEKSLA 861
+PD+G + + LDRE SE+T+ +V D ++ + I + DVNDN P F
Sbjct: 58 EPDTGVVWLRQPLDRETKSEFTVEFSVSDHQGV---ITRKVNIQVGDVNDNAPTFHNQPY 114
Query: 862 SFRVTENALNGTVIFKVNATDLDLGDNAKVVYSLMTDTQDFAVDSATGSLYVSASLDRER 921
S R+ EN GT IF VNATD DLG V+YS + FA+DSA G + V LD E
Sbjct: 115 SVRIPENTPVGTPIFIVNATDPDLGAGGSVLYSFQPPSPFFAIDSARGIVTVIQELDYEV 174
Query: 922 QDLYELKIRASDCDGRNDMYTLHADALVRVTIDDINDN 959
Y+L + A+D ++ L A + + I D+ D
Sbjct: 175 TQAYQLTVNATD---QDKTRPLSTLANLAIIITDMQDM 209
Score = 218 bits (558), Expect = 2e-65
Identities = 65/218 (29%), Positives = 94/218 (43%), Gaps = 12/218 (5%)
Query: 373 NDNKPVFDREIYE--VDVPETTPVNTPIIRLKVSDADDGKNAQVFLEIVGGNEGGEFNIN 430
+ P F ++ + + E TPV + + +L D D N + + G F +
Sbjct: 2 VNRLPFFTNHFFDTYLLISEDTPVGSSVTQLLARDMD---NDPLVFGVSGEEASRFFAVE 58
Query: 431 PETGMLYTAVTLDAEDKAFYTLTVSAIDQGNAGTRKQSAAKVKVNIVDTNDNDPLFDSPE 490
P+TG+++ LD E K+ +T+ S D T KV + + D NDN P F +
Sbjct: 59 PDTGVVWLRQPLDRETKSEFTVEFSVSDHQGVIT-----RKVNIQVGDVNDNAPTFHNQP 113
Query: 491 MEVSINENEPAGTSVIKVTAKDKDSGENAYISYSIANLKPVPFEIDHFSGVIKTTQVLDY 550
V I EN P GT + V A D D G + YS P F ID G++ Q LDY
Sbjct: 114 YSVRIPENTPVGTPIFIVNATDPDLGAGGSVLYSFQPPSPF-FAIDSARGIVTVIQELDY 172
Query: 551 ESMRREYILRVRASDWGLPYRRQTEMQLKIKLLDVNDN 588
E + Y L V A+D T L I + D+ D
Sbjct: 173 EV-TQAYQLTVNATDQDKTRPLSTLANLAIIITDMQDM 209
Score = 156 bits (396), Expect = 2e-43
Identities = 48/201 (23%), Positives = 74/201 (36%), Gaps = 20/201 (9%)
Query: 283 AIVRVVDRDAGIHGEIASLDIVDGDPDGHFRIVPTKIDPGTKKKEYNIVVLKLLDREIAP 342
+ D D + + + F + +P T + + + LDRE
Sbjct: 30 TQLLARDMDND---PL-VFGVSGEEASRFFAV-----EPDT----GVVWLRQPLDRETKS 76
Query: 343 LGYNLTLRAVDKGTPPRETYKATQVHLVDLNDNKPVFDREIYEVDVPETTPVNTPIIRLK 402
+ + D + + D+NDN P F + Y V +PE TPV TPI +
Sbjct: 77 E-FTVEFSVSDHQGVITRK---VNIQVGDVNDNAPTFHNQPYSVRIPENTPVGTPIFIVN 132
Query: 403 VSDADDGKNAQVFLEIVGGNEGGEFNINPETGMLYTAVTLDAEDKAFYTLTVSAIDQGNA 462
+D D G V + F I+ G++ LD E Y LTV+A DQ
Sbjct: 133 ATDPDLGAGGSVLYSFQPPSP--FFAIDSARGIVTVIQELDYEVTQAYQLTVNATDQDKT 190
Query: 463 GTRKQSAAKVKVNIVDTNDND 483
+ A + + I D D D
Sbjct: 191 RPLS-TLANLAIIITDMQDMD 210
Score = 146 bits (370), Expect = 5e-40
Identities = 50/213 (23%), Positives = 95/213 (44%), Gaps = 18/213 (8%)
Query: 480 NDNDPLFDSP--EMEVSINENEPAGTSVIKVTAKDKDSGENAYISYSIANLKP-VPFEID 536
+ P F + + + I+E+ P G+SV ++ A+D D+ + + ++ + F ++
Sbjct: 2 VNRLPFFTNHFFDTYLLISEDTPVGSSVTQLLARDMDNDP---LVFGVSGEEASRFFAVE 58
Query: 537 HFSGVIKTTQVLDYESMRREYILRVRASDWGLPYRRQTEMQLKIKLLDVNDNRPQFEKVD 596
+GV+ Q LD E+ + E+ + SD ++ I++ DVNDN P F
Sbjct: 59 PDTGVVWLRQPLDRET-KSEFTVEFSVSDHQGV----ITRKVNIQVGDVNDNAPTFHNQP 113
Query: 597 CLGHVPRNLPIGREIITLSAIDFDAGN--IISYRIVSGNEDGCFALDITSGVLSIACDLT 654
+P N P+G I ++A D D G + Y + FA+D G++++ +L
Sbjct: 114 YSVRIPENTPVGTPIFIVNATDPDLGAGGSVLYSFQPPSPF--FAIDSARGIVTVIQELD 171
Query: 655 DVRVNEREINVTATDSAH---FSDVVRIRINLV 684
++ V ATD S + + I +
Sbjct: 172 YEVTQAYQLTVNATDQDKTRPLSTLANLAIIIT 204
Score = 142 bits (360), Expect = 1e-38
Identities = 35/136 (25%), Positives = 62/136 (45%), Gaps = 11/136 (8%)
Query: 957 NDNAPNFALPNY--SVKVREDIPVGTVVAILSASDPDLGQGGVVRYTIVSDNEADDVFSI 1014
+ P F + + + ED PVG+ V L A D D + + + + A F++
Sbjct: 2 VNRLPFFTNHFFDTYLLISEDTPVGSSVTQLLARDMD---NDPLVFGVSGEE-ASRFFAV 57
Query: 1015 DRLTGTIRVAKPLDFEKRQVHSLVVRAKDNGSPPLYSEATLIVEVSDVNENMNAPVFSDF 1074
+ TG + + +PLD E + ++ D+ + ++V DVN+N AP F +
Sbjct: 58 EPDTGVVWLRQPLDRETKSEFTVEFSVSDHQGV---ITRKVNIQVGDVNDN--APTFHNQ 112
Query: 1075 VYQATVKENQPIGTSL 1090
Y + EN P+GT +
Sbjct: 113 PYSVRIPENTPVGTPI 128
Score = 130 bits (330), Expect = 1e-34
Identities = 57/234 (24%), Positives = 93/234 (39%), Gaps = 43/234 (18%)
Query: 36 RFTQKDYN--VSISENSNSKTYVTPEEKMGIYRGTSEVD-----IRFKISSGDRDKFFKA 88
FT ++ + ISE++ + VT D + F +S + +FF
Sbjct: 7 FFTNHFFDTYLLISEDTPVGSSVTQL---------LARDMDNDPLVFGVSGEEASRFFA- 56
Query: 89 EERLVGDFWFLLIRTRTGN---TDVLNRERKDKYILHIKATITHRDGKKASYEETTCKVH 145
+ TG L+RE K ++ + + D + T KV+
Sbjct: 57 ------------VEPDTGVVWLRQPLDRETKSEFTVEFSVS----DHQGVI----TRKVN 96
Query: 146 VNVLDTNDLNPLFYPTEYEETVPEDLPLHTSILRVSAEDADLGRNGEIYYSFRDMNEQFS 205
+ V D ND P F+ Y +PE+ P+ T I V+A D DLG G + YSF+ + F+
Sbjct: 97 IQVGDVNDNAPTFHNQPYSVRIPENTPVGTPIFIVNATDPDLGAGGSVLYSFQPPSPFFA 156
Query: 206 IHPTSGVVTLTRPLKYTDRSVHDLVVLGQDRGSVFKGGGKPSSAKLKIKVEQIN 259
I G+VT+ + L Y + L V D+ + A L I + +
Sbjct: 157 IDSARGIVTVIQELDYEVTQAYQLTVNATDQDKT---RPLSTLANLAIIITDMQ 207
Score = 43.0 bits (102), Expect = 2e-04
Identities = 24/123 (19%), Positives = 37/123 (30%), Gaps = 27/123 (21%)
Query: 36 RFTQKDYNVSISENSNSKTYVTPEEKMGIYRGTSEVDIRFKISSGDRDKFFKAEER--LV 93
F + Y+V I EN+ T + F +++ D D
Sbjct: 108 TFHNQPYSVRIPENTPVGTPI------------------FIVNATDPDLGAGGSVLYSFQ 149
Query: 94 GDFWFLLIRTRTGN---TDVLNRERKDKYILHIKATITHRDGKKASYEETTCKVHVNVLD 150
F I + G L+ E Y L + AT D K T + + + D
Sbjct: 150 PPSPFFAIDSARGIVTVIQELDYEVTQAYQLTVNAT----DQDKTRPLSTLANLAIIITD 205
Query: 151 TND 153
D
Sbjct: 206 MQD 208
Score = 34.5 bits (80), Expect = 0.13
Identities = 6/29 (20%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
Query: 1064 ENMNAPVFSDFVYQATVK--ENQPIGTSL 1090
+ P F++ + + E+ P+G+S+
Sbjct: 1 QVNRLPFFTNHFFDTYLLISEDTPVGSSV 29
>2a4e_A Cadherin-11; dimer, calcium binding, cell adhesion; 3.20A {Mus
musculus}
Length = 215
Score = 199 bits (507), Expect = 2e-58
Identities = 58/207 (28%), Positives = 98/207 (47%), Gaps = 8/207 (3%)
Query: 760 VNESVPLKSTLTKIIARDRDLGYNGKLVFGISSGDNDSVFRIDPDSGELKVVGYLDRERT 819
+ E L + D D G +G + + +S ++F ID SG + LDRE
Sbjct: 11 IEEYTGPDPVLVGRLHSDIDSG-DGNIKYILSGEGAGTIFVIDDKSGNIHATKTLDREER 69
Query: 820 SEYTLNITVYDLGKPQ-KSTSKMLPITILDVNDNPPKFEKSLASFRVTENALNGTVIFKV 878
++YTL D + + + D+NDNPP+F + V E + GT + +V
Sbjct: 70 AQYTLMAQAVDRDTNRPLEPPSEFIVKVQDINDNPPEFLHEIYHANVPERSNVGTSVIQV 129
Query: 879 NATDLD---LGDNAKVVYSLMTDTQDFAVDSATGSLYVSA-SLDRERQDLYELKIRASDC 934
A+D D G++AK+VYS++ F+V++ TG + + ++DRE ++ Y + I+A D
Sbjct: 130 TASDADDPTYGNSAKLVYSILEGQPYFSVEAQTGIIRTALPNMDREAKEEYHVVIQAKDM 189
Query: 935 DGRNDMYTLHADALVRVTIDDINDNAP 961
G M L V +T+ D +
Sbjct: 190 GG--HMGGLSGTTKVTITLTDDYKDDD 214
Score = 187 bits (478), Expect = 2e-54
Identities = 60/211 (28%), Positives = 98/211 (46%), Gaps = 15/211 (7%)
Query: 863 FRVTENALNGTVIFKVNATDLDLGDNAKVVYSLMTDTQD--FAVDSATGSLYVSASLDRE 920
F + E V+ +D+D G + + Y L + F +D +G+++ + +LDRE
Sbjct: 9 FVIEEYTGPDPVLVGRLHSDIDSG-DGNIKYILSGEGAGTIFVIDDKSGNIHATKTLDRE 67
Query: 921 RQDLYELKIRASDCDGRNDMYTLHADALVRVTIDDINDNAPNFALPNYSVKVREDIPVGT 980
+ Y L +A D D L + V + DINDN P F Y V E VGT
Sbjct: 68 ERAQYTLMAQAVDRDTNRP---LEPPSEFIVKVQDINDNPPEFLHEIYHANVPERSNVGT 124
Query: 981 VVAILSASDPD---LGQGGVVRYTIVSDNEADDVFSIDRLTGTIRVAKP-LDFEKRQVHS 1036
V ++ASD D G + Y+I+ FS++ TG IR A P +D E ++ +
Sbjct: 125 SVIQVTASDADDPTYGNSAKLVYSILEGQ---PYFSVEAQTGIIRTALPNMDREAKEEYH 181
Query: 1037 LVVRAKDNGS--PPLYSEATLIVEVSDVNEN 1065
+V++AKD G L + + ++D ++
Sbjct: 182 VVIQAKDMGGHMGGLSGTTKVTITLTDDYKD 212
Score = 181 bits (462), Expect = 2e-52
Identities = 59/212 (27%), Positives = 99/212 (46%), Gaps = 9/212 (4%)
Query: 384 YEVDVPETTPVNTPIIRLKVSDADDGKNAQVFLEIVGGNEGGEFNINPETGMLYTAVTLD 443
+ E T + ++ SD D G + + + G G F I+ ++G ++ TLD
Sbjct: 7 QFFVIEEYTGPDPVLVGRLHSDIDSG-DGNIKYILSGEGAGTIFVIDDKSGNIHATKTLD 65
Query: 444 AEDKAFYTLTVSAIDQGNAGTRKQSAAKVKVNIVDTNDNDPLFDSPEMEVSINENEPAGT 503
E++A YTL A+D+ + ++ V + D NDN P F ++ E GT
Sbjct: 66 REERAQYTLMAQAVDRDT-NRPLEPPSEFIVKVQDINDNPPEFLHEIYHANVPERSNVGT 124
Query: 504 SVIKVTAKDKDS---GENAYISYSIANLKPVPFEIDHFSGVIKTTQ-VLDYESMRREYIL 559
SVI+VTA D D G +A + YSI +P F ++ +G+I+T +D E+ + EY +
Sbjct: 125 SVIQVTASDADDPTYGNSAKLVYSILEGQPY-FSVEAQTGIIRTALPNMDREA-KEEYHV 182
Query: 560 RVRASDWG-LPYRRQTEMQLKIKLLDVNDNRP 590
++A D G ++ I L D +
Sbjct: 183 VIQAKDMGGHMGGLSGTTKVTITLTDDYKDDD 214
Score = 157 bits (398), Expect = 1e-43
Identities = 64/208 (30%), Positives = 92/208 (44%), Gaps = 19/208 (9%)
Query: 282 YAIVRVVDRDAGIHGEIASLDIVDGDPDGHFRIVPTKIDPGTKKKEYNIVVLKLLDREIA 341
D D+G G I + F I D + NI K LDRE
Sbjct: 21 LVGRLHSDIDSG-DGNI-KYILSGEGAGTIFVI-----DDKS----GNIHATKTLDREER 69
Query: 342 PLGYNLTLRAVDKGTP-PRETYKATQVHLVDLNDNKPVFDREIYEVDVPETTPVNTPIIR 400
Y L +AVD+ T P E V + D+NDN P F EIY +VPE + V T +I+
Sbjct: 70 AQ-YTLMAQAVDRDTNRPLEPPSEFIVKVQDINDNPPEFLHEIYHANVPERSNVGTSVIQ 128
Query: 401 LKVSDADD---GKNAQVFLEIVGGNEGGEFNINPETGMLYTAV-TLDAEDKAFYTLTVSA 456
+ SDADD G +A++ I+ G F++ +TG++ TA+ +D E K Y + + A
Sbjct: 129 VTASDADDPTYGNSAKLVYSILEGQP--YFSVEAQTGIIRTALPNMDREAKEEYHVVIQA 186
Query: 457 IDQGNAGTRKQSAAKVKVNIVDTNDNDP 484
D G KV + + D +D
Sbjct: 187 KDMGGHMGGLSGTTKVTITLTDDYKDDD 214
Score = 133 bits (338), Expect = 1e-35
Identities = 50/203 (24%), Positives = 81/203 (39%), Gaps = 15/203 (7%)
Query: 493 VSINENEPAGTSVIKVTAKDKDSGENAYISYSIA-NLKPVPFEIDHFSGVIKTTQVLDYE 551
I E ++ D DSG + I Y ++ F ID SG I T+ LD E
Sbjct: 9 FVIEEYTGPDPVLVGRLHSDIDSG-DGNIKYILSGEGAGTIFVIDDKSGNIHATKTLDRE 67
Query: 552 SMRREYILRVRASDWGLPYRRQTEMQLKIKLLDVNDNRPQFEKVDCLGHVPRNLPIGREI 611
R +Y L +A D + + +K+ D+NDN P+F +VP +G +
Sbjct: 68 -ERAQYTLMAQAVDRDTNRPLEPPSEFIVKVQDINDNPPEFLHEIYHANVPERSNVGTSV 126
Query: 612 ITLSAIDFDAGNI-----ISYRIVSGNEDGCFALDITSGVLSIACDLTDVRVNER-EINV 665
I ++A D D + Y I+ G F+++ +G++ A D E + +
Sbjct: 127 IQVTASDADDPTYGNSAKLVYSILEGQPY--FSVEAQTGIIRTALPNMDREAKEEYHVVI 184
Query: 666 TATDSA----HFSDVVRIRINLV 684
A D S ++ I L
Sbjct: 185 QAKDMGGHMGGLSGTTKVTITLT 207
Score = 127 bits (321), Expect = 2e-33
Identities = 40/125 (32%), Positives = 60/125 (48%), Gaps = 5/125 (4%)
Query: 966 PNYSVKVREDIPVGTVVAILSASDPDLGQGGVVRYTIVSDNEADDVFSIDRLTGTIRVAK 1025
N + E V+ SD D G G ++Y + + A +F ID +G I K
Sbjct: 5 WNQFFVIEEYTGPDPVLVGRLHSDIDSGDG-NIKYILSGEG-AGTIFVIDDKSGNIHATK 62
Query: 1026 PLDFEKRQVHSLVVRAKDNGSP-PLYSEATLIVEVSDVNENMNAPVFSDFVYQATVKENQ 1084
LD E+R ++L+ +A D + PL + IV+V D+N+N P F +Y A V E
Sbjct: 63 TLDREERAQYTLMAQAVDRDTNRPLEPPSEFIVKVQDINDN--PPEFLHEIYHANVPERS 120
Query: 1085 PIGTS 1089
+GTS
Sbjct: 121 NVGTS 125
Score = 116 bits (293), Expect = 1e-29
Identities = 51/225 (22%), Positives = 85/225 (37%), Gaps = 28/225 (12%)
Query: 42 YNVSISENSNSKTYVTPEEKMGIYRGTSEVDIRFKISSGDRDKFFKAEERLVGDFWFLLI 101
I E + + I G I++ +S F I
Sbjct: 7 QFFVIEEYTGPDPVLVGRLHSDIDSGDGN--IKYILSGEGAGTIFV-------------I 51
Query: 102 RTRTGN---TDVLNRERKDKYILHIKATITHRDGKKASYEETTCKVHVNVLDTNDLNPLF 158
++GN T L+RE + +Y L +A D E + V V D ND P F
Sbjct: 52 DDKSGNIHATKTLDREERAQYTLMAQAV----DRDTNRPLEPPSEFIVKVQDINDNPPEF 107
Query: 159 YPTEYEETVPEDLPLHTSILRVSAEDAD---LGRNGEIYYSFRDMNEQFSIHPTSGVVTL 215
Y VPE + TS+++V+A DAD G + ++ YS + FS+ +G++
Sbjct: 108 LHEIYHANVPERSNVGTSVIQVTASDADDPTYGNSAKLVYSILEGQPYFSVEAQTGIIRT 167
Query: 216 TRP-LKYTDRSVHDLVVLGQDRGSVFKGGGKPSSAKLKIKVEQIN 259
P + + + +V+ +D G GG + K+ I +
Sbjct: 168 ALPNMDREAKEEYHVVIQAKDMGG--HMGGLSGTTKVTITLTDDY 210
Score = 94.7 bits (236), Expect = 5e-22
Identities = 30/118 (25%), Positives = 51/118 (43%), Gaps = 8/118 (6%)
Query: 744 ENVHVPEFFSFPIELQVNESVPLKSTLTKIIARDRD---LGYNGKLVFGISSGDNDSVFR 800
N + PEF V E + +++ ++ A D D G + KLV+ I G F
Sbjct: 100 INDNPPEFLHEIYHANVPERSNVGTSVIQVTASDADDPTYGNSAKLVYSILEGQP--YFS 157
Query: 801 IDPDSGELKVV-GYLDRERTSEYTLNITVYDLG--KPQKSTSKMLPITILDVNDNPPK 855
++ +G ++ +DRE EY + I D+G S + + IT+ D + K
Sbjct: 158 VEAQTGIIRTALPNMDREAKEEYHVVIQAKDMGGHMGGLSGTTKVTITLTDDYKDDDK 215
Score = 49.6 bits (119), Expect = 1e-06
Identities = 29/129 (22%), Positives = 48/129 (37%), Gaps = 29/129 (22%)
Query: 36 RFTQKDYNVSISENSNSKTYVTP-------EEKMGIYRGTSEVDIRFKISSGDRDKFFKA 88
F + Y+ ++ E SN T V + G + + + I G F +
Sbjct: 106 EFLHEIYHANVPERSNVGTSVIQVTASDADDPTYG-----NSAKLVYSILEGQ-PYF--S 157
Query: 89 EERLVGDFWFLLIRTRTGNTDVLNRERKDKYILHIKATITHRD-GKKASYEETTCKVHVN 147
E G +IRT N ++RE K++Y + I+A D G T KV +
Sbjct: 158 VEAQTG-----IIRTALPN---MDREAKEEYHVVIQAK----DMGGHMGGLSGTTKVTIT 205
Query: 148 VLDTNDLNP 156
+ D +
Sbjct: 206 LTDDYK-DD 213
>2x2u_A Proto-oncogene tyrosine-protein kinase receptor RET; hirschsprung
disease, extracellular domain, disease mutation,
transferase, glycoprotein; HET: NAG SO4; 2.00A {Homo
sapiens}
Length = 246
Score = 193 bits (491), Expect = 7e-56
Identities = 42/244 (17%), Positives = 73/244 (29%), Gaps = 30/244 (12%)
Query: 379 FDREIYEVDVPETTPVNTPIIRLK--VSDADDGKNAQV-----FLEIVGGNEGGEFNINP 431
F R+ Y + TP++ + ++ + ++ +E I
Sbjct: 3 FSRDAYWEKLYVDQAAGTPLLYVHALRDAPEEVPSFRLGQHLYGTYRTRLHENNWIRIQE 62
Query: 432 ETGMLYTAVTLDAEDKAFY------------TLTVSAIDQGNAGTRKQSAAKVKVNIVDT 479
+TG+LY +LD L V Q +V
Sbjct: 63 DTGLLYLQRSLDHSSWEKLSVRNRGFPLLTVYLKVFLSPTSLREGECQWPGCARVYFSFF 122
Query: 480 NDNDP----------LFDSPEMEVSINENEPAGTSVIKVTAKDKDSGENAYISYSIANLK 529
N + P F I EN P GT + ++Y + +
Sbjct: 123 NTSFPACSSLKPRELCFPETRPSFRIRENRPPGTFHQFRLLPVQFLCPQISVAYRLLEGE 182
Query: 530 PVPFEIDHFSGVIKTTQVLDYESMRREYILRVRASDWGLPYRRQTEMQLKIKLLDVNDNR 589
+PF S + T LD E R +Y L + + + + D +D+
Sbjct: 183 GLPFRSAPDSLEVSTRWALDREQ-REKYELVAVCTVHAGAREEVVMVPFPVTVYDEDDSA 241
Query: 590 PQFE 593
P+FE
Sbjct: 242 PEFE 245
Score = 187 bits (477), Expect = 6e-54
Identities = 42/248 (16%), Positives = 74/248 (29%), Gaps = 34/248 (13%)
Query: 856 FEKSLASFRVTENALNGTVIFKVNAT--DLDLGDNAKVVYSLMTDTQD-------FAVDS 906
F + ++ + GT + V+A + + ++ L + +
Sbjct: 3 FSRDAYWEKLYVDQAAGTPLLYVHALRDAPEEVPSFRLGQHLYGTYRTRLHENNWIRIQE 62
Query: 907 ATGSLYVSASLDRERQDLYELKIRASDC----------DGRNDMYTLHADALVRVTIDDI 956
TG LY+ SLD + ++ R RV
Sbjct: 63 DTGLLYLQRSLDHSSWEKLSVRNRGFPLLTVYLKVFLSPTSLREGECQWPGCARVYFSFF 122
Query: 957 NDNAP----------NFALPNYSVKVREDIPVGTVVAILSASDPDLGQGGVVRYTIVSDN 1006
N + P F S ++RE+ P GT L V Y ++
Sbjct: 123 NTSFPACSSLKPRELCFPETRPSFRIRENRPPGTFHQFRLLPVQFLCPQISVAYRLLEGE 182
Query: 1007 EADDVFSIDRLTGTIRVAKPLDFEKRQVHSLVVRAKD-NGSPPLYSEATLIVEVSDVNEN 1065
F + + LD E+R+ + LV G+ V V D ++
Sbjct: 183 --GLPFRSAPDSLEVSTRWALDREQREKYELVAVCTVHAGAREEVVMVPFPVTVYDEDD- 239
Query: 1066 MNAPVFSD 1073
+AP F +
Sbjct: 240 -SAPEFEN 246
Score = 172 bits (437), Expect = 1e-48
Identities = 43/247 (17%), Positives = 80/247 (32%), Gaps = 36/247 (14%)
Query: 751 FFSFPI-ELQVNESVPLKSTLTKIIA--RDRDLGYNGKLVFGI-----SSGDNDSVFRID 802
+FS ++ + L + A + + +L + + ++ RI
Sbjct: 2 YFSRDAYWEKLYVDQAAGTPLLYVHALRDAPEEVPSFRLGQHLYGTYRTRLHENNWIRIQ 61
Query: 803 PDSGELKVVGYLDRERTSEYTL--------------NITVYDLGKPQKSTSKMLPITILD 848
D+G L + LD + ++ ++ L + + +
Sbjct: 62 EDTGLLYLQRSLDHSSWEKLSVRNRGFPLLTVYLKVFLSPTSLREGECQWPGCARVYFSF 121
Query: 849 VNDNPP----------KFEKSLASFRVTENALNGTVIFKVNATDLDLGDNAKVVYSLMTD 898
N + P F ++ SFR+ EN GT L V Y L+
Sbjct: 122 FNTSFPACSSLKPRELCFPETRPSFRIRENRPPGTFHQFRLLPVQFLCPQISVAYRLLEG 181
Query: 899 TQD-FAVDSATGSLYVSASLDRERQDLYELKIRASDCDGRNDMYTLHADALVRVTIDDIN 957
F + + +LDRE+++ YEL + G VT+ D +
Sbjct: 182 EGLPFRSAPDSLEVSTRWALDREQREKYELVAVCTVHAGAR---EEVVMVPFPVTVYDED 238
Query: 958 DNAPNFA 964
D+AP F
Sbjct: 239 DSAPEFE 245
Score = 126 bits (318), Expect = 1e-32
Identities = 31/227 (13%), Positives = 58/227 (25%), Gaps = 40/227 (17%)
Query: 289 DRDAGIHGEIA----SLDIVDGDPDGHFRIVPTKIDPGTKKKEYNIVVLKLLDRE----- 339
+ + + RI T + + + LD
Sbjct: 31 APEEVPSFRLGQHLYGTYRTRLHENNWIRI-----QEDTG----LLYLQRSLDHSSWEKL 81
Query: 340 --------IAPLGYNLTLRAVDKGTPPRETYKATQVHLVDLNDNKPV----------FDR 381
+ + + L + +V+ N + P F
Sbjct: 82 SVRNRGFPLLTVYLKVFLSPTSLREGECQWPGCARVYFSFFNTSFPACSSLKPRELCFPE 141
Query: 382 EIYEVDVPETTPVNTPIIRLKVSDADDGKNAQVFLEIVGGNEGGEFNINPETGMLYTAVT 441
+ E P T + V ++ G G F P++ + T
Sbjct: 142 TRPSFRIRENRPPGTFHQFRLLPVQFLCPQISVAYRLLEGE-GLPFRSAPDSLEVSTRWA 200
Query: 442 LDAEDKAFYTLTVSAIDQGNAGTRKQSA-AKVKVNIVDTNDNDPLFD 487
LD E + Y L G R++ V + D +D+ P F+
Sbjct: 201 LDREQREKYELVAVCTVHA--GAREEVVMVPFPVTVYDEDDSAPEFE 245
Score = 123 bits (311), Expect = 1e-31
Identities = 42/267 (15%), Positives = 86/267 (32%), Gaps = 43/267 (16%)
Query: 601 VPRNLPIGREIITLSAIDFDAGNIISYRIV---------SGNEDGCFALDITSGVLSIAC 651
+ + G ++ + A+ + S+R+ +E+ + +G+L +
Sbjct: 12 LYVDQAAGTPLLYVHALRDAPEEVPSFRLGQHLYGTYRTRLHENNWIRIQEDTGLLYLQR 71
Query: 652 DLTDVRVNEREINVTATDSAHFSDVVRIRINLVSARRIPEPGKTLENDSGGFECKDTGVA 711
L + ++ + V +++ L EC+ G A
Sbjct: 72 SLD----HSSWEKLSVRNRGFPLLTVYLKVFLSPT------------SLREGECQWPGCA 115
Query: 712 RRLTEVLAAAEKNNLRSQSYQEEFAMMPSRYGENVHVPEFFSFPIELQVNESVPLKSTLT 771
R N P+ F ++ E+ P +
Sbjct: 116 RVYFSFF-----NTS-----------FPACSSLKPRELCFPETRPSFRIRENRPPGTFHQ 159
Query: 772 KIIARDRDLGYNGKLVFGISSGDNDSVFRIDPDSGELKVVGYLDRERTSEYTLNITVYD- 830
+ + L + + + G+ FR PDS E+ LDRE+ +Y L
Sbjct: 160 FRLLPVQFLCPQISVAYRLLEGEGLP-FRSAPDSLEVSTRWALDREQREKYELVAVCTVH 218
Query: 831 LGKPQKSTSKMLPITILDVNDNPPKFE 857
G ++ P+T+ D +D+ P+FE
Sbjct: 219 AGAREEVVMVPFPVTVYDEDDSAPEFE 245
Score = 123 bits (309), Expect = 2e-31
Identities = 38/255 (14%), Positives = 71/255 (27%), Gaps = 44/255 (17%)
Query: 158 FYPTEYEETVPEDLPLHTSILRVSA--EDADLGRNGEIYYSFR-------DMNEQFSIHP 208
F Y E + D T +L V A + + + + N I
Sbjct: 3 FSRDAYWEKLYVDQAAGTPLLYVHALRDAPEEVPSFRLGQHLYGTYRTRLHENNWIRIQE 62
Query: 209 TSGVVTLTRPLKY--------TDRSVHDLVVLGQDRGSV--FKGGGKPSSAKLKIKVEQI 258
+G++ L R L + +R L V + S + G ++
Sbjct: 63 DTGLLYLQRSLDHSSWEKLSVRNRGFPLLTVYLKVFLSPTSLREGECQWPGCARVYFSFF 122
Query: 259 NLYGPEIYVQSLPDIV--EQSYA----------DIYAIVRVVDRDAGIHGEIASLDIVDG 306
N P ++ E + + + + + + +++G
Sbjct: 123 NTSFPACSSLKPRELCFPETRPSFRIRENRPPGTFHQFRLLPVQFLCPQISV-AYRLLEG 181
Query: 307 DPDGHFRIVPTKIDPGTKKKEYNIVVLKLLDREIAPLGYNLTLRAVDK-GTPPRETYKAT 365
+ FR P + + LDRE Y L G
Sbjct: 182 E-GLPFR-----SAPDS----LEVSTRWALDREQREK-YELVAVCTVHAGAREEVVMVPF 230
Query: 366 QVHLVDLNDNKPVFD 380
V + D +D+ P F+
Sbjct: 231 PVTVYDEDDSAPEFE 245
Score = 110 bits (277), Expect = 3e-27
Identities = 30/216 (13%), Positives = 60/216 (27%), Gaps = 33/216 (15%)
Query: 486 FDSPEMEVSINENEPAGTSVIKVTA--KDKDSGENAYISYSIANLKPVP------FEIDH 537
F + ++ AGT ++ V A + + + + I
Sbjct: 3 FSRDAYWEKLYVDQAAGTPLLYVHALRDAPEEVPSFRLGQHLYGTYRTRLHENNWIRIQE 62
Query: 538 FSGVIKTTQVLDYESMRR-------EYILRVRASDWGLPY-----RRQTEMQLKIKLLDV 585
+G++ + LD+ S + +L V + P Q ++
Sbjct: 63 DTGLLYLQRSLDHSSWEKLSVRNRGFPLLTVYLKVFLSPTSLREGECQWPGCARVYFSFF 122
Query: 586 NDNRPQ----------FEKVDCLGHVPRNLPIGREIITLSAIDFDAGN--IISYRIVSGN 633
N + P F + + N P G ++YR++ G
Sbjct: 123 NTSFPACSSLKPRELCFPETRPSFRIRENRPPGTFHQFRLLPVQFLCPQISVAYRLLEGE 182
Query: 634 EDGCFALDITSGVLSIACDLTDVRVNEREINVTATD 669
F S +S L + + E+ T
Sbjct: 183 -GLPFRSAPDSLEVSTRWALDREQREKYELVAVCTV 217
Score = 101 bits (252), Expect = 5e-24
Identities = 35/259 (13%), Positives = 62/259 (23%), Gaps = 55/259 (21%)
Query: 35 LRFTQKDYNVSISENSNSKTYVT--------PEEKMGIYRGTSEVDIRFKISSGDRDKFF 86
L F++ Y + + + T + PEE +R + ++ + +
Sbjct: 1 LYFSRDAYWEKLYVDQAAGTPLLYVHALRDAPEEVPS-FRLGQHLYGTYRTRLHENNWI- 58
Query: 87 KAEERLVGDFWFLLIRTRTGN---TDVLNRERKDKY--------ILHIKATITHRDGKKA 135
I+ TG L+ +K +L + +
Sbjct: 59 -------------RIQEDTGLLYLQRSLDHSSWEKLSVRNRGFPLLTVYLKVFLSPTSLR 105
Query: 136 SYEET-TCKVHVNVLDTNDLNP----------LFYPTEYEETVPEDLPLHTSILRVSAED 184
E V N P F T + E+ P T
Sbjct: 106 EGECQWPGCARVYFSFFNTSFPACSSLKPRELCFPETRPSFRIRENRPPGTFHQFRLLPV 165
Query: 185 ADLGRNGEIYYSFR-DMNEQFSIHPTSGVVTLTRPLKYTDRSVHDLVVLGQDRGSVFKGG 243
L + Y F P S V+ L R ++LV +
Sbjct: 166 QFLCPQISVAYRLLEGEGLPFRSAPDSLEVSTRWALDREQREKYELVAVCTVH------A 219
Query: 244 GKP---SSAKLKIKVEQIN 259
G + V +
Sbjct: 220 GAREEVVMVPFPVTVYDED 238
Score = 97.3 bits (242), Expect = 1e-22
Identities = 23/155 (14%), Positives = 43/155 (27%), Gaps = 28/155 (18%)
Query: 963 FALPNYSVKVREDIPVGTVVAILSA--SDPDLGQGGVVRYTIVSDNE----ADDVFSIDR 1016
F+ Y K+ D GT + + A P+ + + ++ I
Sbjct: 3 FSRDAYWEKLYVDQAAGTPLLYVHALRDAPEEVPSFRLGQHLYGTYRTRLHENNWIRIQE 62
Query: 1017 LTGTIRVAKPLDFEKRQVHSL--------------VVRAKDNGSPPLYSEATLIVEVSDV 1062
TG + + + LD + S+ + V S
Sbjct: 63 DTGLLYLQRSLDHSSWEKLSVRNRGFPLLTVYLKVFLSPTSLREGECQWPGCARVYFSFF 122
Query: 1063 NEN--------MNAPVFSDFVYQATVKENQPIGTS 1089
N + F + ++EN+P GT
Sbjct: 123 NTSFPACSSLKPRELCFPETRPSFRIRENRPPGTF 157
Score = 48.4 bits (115), Expect = 4e-06
Identities = 24/135 (17%), Positives = 39/135 (28%), Gaps = 34/135 (25%)
Query: 33 SSLRFTQKDYNVSISENSNSKTYVTPEEKMGIYRGTSEVD------IRFKISSGDRDKFF 86
L F + + I EN T+ +R + +++ G+ F
Sbjct: 135 RELCFPETRPSFRIRENRPPGTFH-------QFRLLPVQFLCPQISVAYRLLEGEGLPF- 186
Query: 87 KAEERLVGDFWFLLIRTRTGN---TDVLNRERKDKYILHIKATITHRDGKKASYEETTCK 143
+ L+RE+++KY L T A E
Sbjct: 187 -------------RSAPDSLEVSTRWALDREQREKYELVAVCT----VHAGAREEVVMVP 229
Query: 144 VHVNVLDTNDLNPLF 158
V V D +D P F
Sbjct: 230 FPVTVYDEDDSAPEF 244
Score = 30.7 bits (69), Expect = 2.6
Identities = 7/20 (35%), Positives = 9/20 (45%)
Query: 1071 FSDFVYQATVKENQPIGTSL 1090
FS Y + +Q GT L
Sbjct: 3 FSRDAYWEKLYVDQAAGTPL 22
>3qrb_A Cadherin-1; cell adhesion; HET: PGE; 1.80A {Mus musculus} PDB: 1ff5_A
3lng_A 2qvf_B 1edh_A 3lne_A 1q1p_A 3lni_A 3q2l_A* 3q2n_A*
3lnh_A 3lnf_A 2o72_A 1suh_A
Length = 213
Score = 190 bits (484), Expect = 3e-55
Identities = 60/213 (28%), Positives = 88/213 (41%), Gaps = 18/213 (8%)
Query: 862 SFRVTENALNGTVIFKVNATDLDLGDNAKVVYSLMTDTQD------FAVDSATGSLYVSA 915
+ EN G + + KV YS+ D F ++ TG L V+
Sbjct: 6 AISCPENEK-GEFPKNLVQIKSNRDKETKVFYSITGQGADKPPVGVFIIERETGWLKVTQ 64
Query: 916 SLDRERQDLYELKIRASDCDGRNDMYTLHADALVRVTIDDINDNAPNFALPNYSVKVRED 975
LDRE Y L A +G + + +T+ D NDN P F + V E
Sbjct: 65 PLDREAIAKYILYSHAVSSNGE----AVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAEG 120
Query: 976 IPVGTVVAILSASDPDLGQG---GVVRYTIVSDNEA---DDVFSIDRLTGTIRVA-KPLD 1028
GT V +SA+D D + YTIVS + ++F+++R TG I V LD
Sbjct: 121 AVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVLTSGLD 180
Query: 1029 FEKRQVHSLVVRAKDNGSPPLYSEATLIVEVSD 1061
E ++LVV+A D L + A ++ V D
Sbjct: 181 RESYPTYTLVVQAADLQGEGLSTTAKAVITVKD 213
Score = 176 bits (448), Expect = 2e-50
Identities = 57/215 (26%), Positives = 93/215 (43%), Gaps = 19/215 (8%)
Query: 755 PIELQVNESVPLKSTLTKIIARDRDLGYNGKLVFGISSGDNDS----VFRIDPDSGELKV 810
+ E+ ++ + K+ + I+ D VF I+ ++G LKV
Sbjct: 4 IAAISCPENEKG-EFPKNLVQIKSNRDKETKVFYSITGQGADKPPVGVFIIERETGWLKV 62
Query: 811 VGYLDRERTSEYTLNITVYDLGKPQKSTSKMLPITILDVNDNPPKFEKSLASFRVTENAL 870
LDRE ++Y L + IT+ D NDN P+F + + V E A+
Sbjct: 63 TQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAEGAV 122
Query: 871 NGTVIFKVNATDLDLG---DNAKVVYSLMTDTQD------FAVDSATGSLYV-SASLDRE 920
GT + KV+ATD D NA + Y++++ + F V+ TG + V ++ LDRE
Sbjct: 123 PGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVLTSGLDRE 182
Query: 921 RQDLYELKIRASDCDGRNDMYTLHADALVRVTIDD 955
Y L ++A+D G L A +T+ D
Sbjct: 183 SYPTYTLVVQAADLQGE----GLSTTAKAVITVKD 213
Score = 159 bits (404), Expect = 1e-44
Identities = 65/215 (30%), Positives = 88/215 (40%), Gaps = 18/215 (8%)
Query: 383 IYEVDVPETTPVNTPIIRLKVSDADDGKNAQVFLEIVGGNEG----GEFNINPETGMLYT 438
I + PE P L ++ K +VF I G G F I ETG L
Sbjct: 4 IAAISCPENEKGEFPK-NLVQIKSNRDKETKVFYSITGQGADKPPVGVFIIERETGWLKV 62
Query: 439 AVTLDAEDKAFYTLTVSAIDQGNAGTRKQSAAKVKVNIVDTNDNDPLFDSPEMEVSINEN 498
LD E A Y L A+ G + ++ + + D NDN P F E S+ E
Sbjct: 63 TQPLDREAIAKYILYSHAVSSN--GEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAEG 120
Query: 499 EPAGTSVIKVTAKDKDSG---ENAYISYSIANLKPVP-----FEIDHFSGVIKTT-QVLD 549
GTSV+KV+A D D NA I+Y+I + P F ++ +GVI LD
Sbjct: 121 AVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVLTSGLD 180
Query: 550 YESMRREYILRVRASDWGLPYRRQTEMQLKIKLLD 584
ES Y L V+A+D T + I + D
Sbjct: 181 RES-YPTYTLVVQAADLQGE-GLSTTAKAVITVKD 213
Score = 148 bits (376), Expect = 8e-41
Identities = 58/224 (25%), Positives = 87/224 (38%), Gaps = 28/224 (12%)
Query: 263 PEIYVQSLPDIVEQSYADIYAIVRVVDRDAGIHGEIASLDIVDGDPDGHFRIVPTKIDPG 322
PE P + Q ++ D++ + I D P G F I +
Sbjct: 10 PENEKGEFPKNLVQIKSNR-------DKETKVFYSITG-QGADKPPVGVFII-----ERE 56
Query: 323 TKKKEYNIVVLKLLDREIAPLGYNLTLRAVDKGTPPRETYKATQVHLVDLNDNKPVFDRE 382
T + V + LDRE Y L AV E + + D NDN+P F +E
Sbjct: 57 T----GWLKVTQPLDREAIAK-YILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQE 111
Query: 383 IYEVDVPETTPVNTPIIRLKVSDADDG---KNAQVFLEIVGGNEG----GEFNINPETGM 435
++E V E T ++++ +DADD NA + IV + F +N +TG+
Sbjct: 112 VFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGV 171
Query: 436 LYTAV-TLDAEDKAFYTLTVSAIDQGNAGTRKQSAAKVKVNIVD 478
+ LD E YTL V A D G + AK + + D
Sbjct: 172 ISVLTSGLDRESYPTYTLVVQAADLQGEG--LSTTAKAVITVKD 213
Score = 131 bits (332), Expect = 7e-35
Identities = 52/209 (24%), Positives = 82/209 (39%), Gaps = 20/209 (9%)
Query: 492 EVSINENEPAGTSVIKVTAKDKDSGENAYISYSIA-----NLKPVPFEIDHFSGVIKTTQ 546
+S ENE G + + + + YSI F I+ +G +K TQ
Sbjct: 6 AISCPENEK-GEFPKNLVQIKSNRDKETKVFYSITGQGADKPPVGVFIIERETGWLKVTQ 64
Query: 547 VLDYESMRREYILRVRASDWGLPYRRQTEMQLKIKLLDVNDNRPQFEKVDCLGHVPRNLP 606
LD E+ +YIL A + M++ I + D NDNRP+F + G V
Sbjct: 65 PLDREA-IAKYILYSHAVSSNGE-AVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAEGAV 122
Query: 607 IGREIITLSAIDFDAGNI-----ISYRIVSGNED----GCFALDITSGVLSIACDLTDVR 657
G ++ +SA D D I+Y IVS + + F ++ +GV+S+ D
Sbjct: 123 PGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVLTSGLDRE 182
Query: 658 VNER-EINVTATDSAH--FSDVVRIRINL 683
+ V A D S + I +
Sbjct: 183 SYPTYTLVVQAADLQGEGLSTTAKAVITV 211
Score = 129 bits (327), Expect = 3e-34
Identities = 32/125 (25%), Positives = 54/125 (43%), Gaps = 6/125 (4%)
Query: 968 YSVKVREDIPVGTVVAILSASDPDLGQGGVVRYTIVS---DNEADDVFSIDRLTGTIRVA 1024
++ E+ G L + + V Y+I D VF I+R TG ++V
Sbjct: 5 AAISCPENEK-GEFPKNLVQIKSNRDKETKVFYSITGQGADKPPVGVFIIERETGWLKVT 63
Query: 1025 KPLDFEKRQVHSLVVRAKDNGSPPLYSEATLIVEVSDVNENMNAPVFSDFVYQATVKENQ 1084
+PLD E + L A + + +++ V+D N+ N P F+ V++ +V E
Sbjct: 64 QPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQND--NRPEFTQEVFEGSVAEGA 121
Query: 1085 PIGTS 1089
GTS
Sbjct: 122 VPGTS 126
Score = 106 bits (266), Expect = 5e-26
Identities = 59/232 (25%), Positives = 88/232 (37%), Gaps = 41/232 (17%)
Query: 42 YNVSISENSNSKTYVTPEEKMGIYRGTSEVD----IRFKISSGDRDKFFKAEERLVGDFW 97
+S EN + + + S D + + I+ DK G F
Sbjct: 5 AAISCPENEKG-EFPKN-----LVQIKSNRDKETKVFYSITGQGADKPPV------GVF- 51
Query: 98 FLLIRTRTGN---TDVLNRERKDKYILHIKATITHRDGKKASYEETTCKVHVNVLDTNDL 154
+I TG T L+RE KYIL+ A + E ++ + V D ND
Sbjct: 52 --IIERETGWLKVTQPLDREAIAKYILYSHAV----SSNGEA-VEDPMEIVITVTDQNDN 104
Query: 155 NPLFYPTEYEETVPEDLPLHTSILRVSAEDADLG---RNGEIYYSF------RDMNEQFS 205
P F +E +V E TS+++VSA DAD N I Y+ F+
Sbjct: 105 RPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFT 164
Query: 206 IHPTSGVV-TLTRPLKYTDRSVHDLVVLGQDRGSVFKGGGKPSSAKLKIKVE 256
++ +GV+ LT L + LVV D G G ++AK I V+
Sbjct: 165 VNRDTGVISVLTSGLDRESYPTYTLVVQAADLQ----GEGLSTTAKAVITVK 212
Score = 77.0 bits (190), Expect = 6e-16
Identities = 34/113 (30%), Positives = 53/113 (46%), Gaps = 8/113 (7%)
Query: 744 ENVHVPEFFSFPIELQVNESVPLKSTLTKIIARDRDLG---YNGKLVFGISSGD----ND 796
+N + PEF E V E +++ K+ A D D YN + + I S D +
Sbjct: 101 QNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHK 160
Query: 797 SVFRIDPDSGELKVV-GYLDRERTSEYTLNITVYDLGKPQKSTSKMLPITILD 848
++F ++ D+G + V+ LDRE YTL + DL ST+ IT+ D
Sbjct: 161 NMFTVNRDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGLSTTAKAVITVKD 213
Score = 43.1 bits (102), Expect = 2e-04
Identities = 29/127 (22%), Positives = 44/127 (34%), Gaps = 32/127 (25%)
Query: 36 RFTQKDYNVSISENSNSKTYVT------PEEKMGIYRGTSEVDIRFKISSGDRDKFFKAE 89
FTQ+ + S++E + T V ++ + Y I + I S D
Sbjct: 107 EFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNA----AIAYTIVSQD-------- 154
Query: 90 ERLVGDFWFLL------IRTRTGNTDVLNRERKDKYILHIKATITHRDGKKASYEETTCK 143
L F + I T L+RE Y L ++A G+ S TT K
Sbjct: 155 PELPHKNMFTVNRDTGVISVLTSG---LDRESYPTYTLVVQA--ADLQGEGLS---TTAK 206
Query: 144 VHVNVLD 150
+ V D
Sbjct: 207 AVITVKD 213
>3ppe_A Vascular endothelial cadherin; extracellular cadherin (EC) domain,
beta barrel, IG-domain L domain swapped dimer interface;
2.10A {Gallus gallus}
Length = 203
Score = 187 bits (477), Expect = 2e-54
Identities = 51/206 (24%), Positives = 88/206 (42%), Gaps = 11/206 (5%)
Query: 754 FPIELQVNESVPLKSTLTKIIARDRDLGYNGKLVFGISSGDNDSVFRIDPDSGELKVVGY 813
+ ++ PL + K+ + N ++ I +++F++ G++
Sbjct: 5 NRMHIREEIDSPLPHHVGKLTSSVG----NKNAMYIIEGESANTIFKVQGYDGDIYAFER 60
Query: 814 LDRERTSEYTLNITVYD-LGKPQKSTSKMLPITILDVNDNPPKFEKSLASFRVTENALNG 872
LDRE+ +EY L + D I + D+NDN P F + + + V E + G
Sbjct: 61 LDREKKAEYELTAHIIDRRNNRSLEPPSKFIIKVSDINDNAPIFVQKIFNGSVPEMSRLG 120
Query: 873 TVIFKVNATDLD---LGDNAKVVYSLMTDTQDFAVDSATGSLYVSASLDRERQDLYELKI 929
T + KV A D D + +A V Y ++ + F VD + A LDRE Q YE+ +
Sbjct: 121 TSVTKVTAEDADDPTVAGHATVTYQIIKGNEYFTVDDSGVIFTARADLDRESQSAYEIIV 180
Query: 930 RASDCDGRNDMYTLHADALVRVTIDD 955
+A D G + A V + + D
Sbjct: 181 KAKDALGLT---GESSTATVIIRLTD 203
Score = 177 bits (451), Expect = 6e-51
Identities = 52/207 (25%), Positives = 89/207 (42%), Gaps = 18/207 (8%)
Query: 863 FRVTENALN--GTVIFKVNATDLDLGDNAKVVYSLMTDTQD--FAVDSATGSLYVSASLD 918
+ E + + K+ ++ N +Y + ++ + F V G +Y LD
Sbjct: 7 MHIREEIDSPLPHHVGKLTSSV----GNKNAMYIIEGESANTIFKVQGYDGDIYAFERLD 62
Query: 919 RERQDLYELKIRASDCDGRNDMYTLHADALVRVTIDDINDNAPNFALPNYSVKVREDIPV 978
RE++ YEL D +L + + + DINDNAP F ++ V E +
Sbjct: 63 REKKAEYELTAHIIDRRN---NRSLEPPSKFIIKVSDINDNAPIFVQKIFNGSVPEMSRL 119
Query: 979 GTVVAILSASDPD---LGQGGVVRYTIVSDNEADDVFSIDRLTGTIRVAKPLDFEKRQVH 1035
GT V ++A D D + V Y I+ N + F++D LD E + +
Sbjct: 120 GTSVTKVTAEDADDPTVAGHATVTYQIIKGN---EYFTVDDSGVIFTARADLDRESQSAY 176
Query: 1036 SLVVRAKDN-GSPPLYSEATLIVEVSD 1061
++V+AKD G S AT+I+ ++D
Sbjct: 177 EIIVKAKDALGLTGESSTATVIIRLTD 203
Score = 161 bits (410), Expect = 2e-45
Identities = 54/204 (26%), Positives = 81/204 (39%), Gaps = 10/204 (4%)
Query: 384 YEVDVPETTPVNTPIIRLKVSDADDGKNAQVFLEIVGGNEGGEFNINPETGMLYTAVTLD 443
+ +P+ + +L N I G + F + G +Y LD
Sbjct: 7 MHIREEIDSPLPHHVGKLT----SSVGNKNAMYIIEGESANTIFKVQGYDGDIYAFERLD 62
Query: 444 AEDKAFYTLTVSAIDQGNAGTRKQSAAKVKVNIVDTNDNDPLFDSPEMEVSINENEPAGT 503
E KA Y LT ID+ N + +K + + D NDN P+F S+ E GT
Sbjct: 63 REKKAEYELTAHIIDRRN-NRSLEPPSKFIIKVSDINDNAPIFVQKIFNGSVPEMSRLGT 121
Query: 504 SVIKVTAKDKDS---GENAYISYSIANLKPVPFEIDHFSGVIKTTQVLDYESMRREYILR 560
SV KVTA+D D +A ++Y I F +D + LD ES + Y +
Sbjct: 122 SVTKVTAEDADDPTVAGHATVTYQIIKGNEY-FTVDDSGVIFTARADLDRES-QSAYEII 179
Query: 561 VRASDWGLPYRRQTEMQLKIKLLD 584
V+A D + + I+L D
Sbjct: 180 VKAKDALGLTGESSTATVIIRLTD 203
Score = 141 bits (357), Expect = 3e-38
Identities = 45/180 (25%), Positives = 75/180 (41%), Gaps = 17/180 (9%)
Query: 303 IVDGDPDGHFRIVPTKIDPGTKKKEYNIVVLKLLDREIAPLGYNLTLRAVDKGT-PPRET 361
I + F++ +I + LDRE Y LT +D+ E
Sbjct: 37 IEGESANTIFKV-----QGYD----GDIYAFERLDREKKAE-YELTAHIIDRRNNRSLEP 86
Query: 362 YKATQVHLVDLNDNKPVFDREIYEVDVPETTPVNTPIIRLKVSDADD---GKNAQVFLEI 418
+ + D+NDN P+F ++I+ VPE + + T + ++ DADD +A V +I
Sbjct: 87 PSKFIIKVSDINDNAPIFVQKIFNGSVPEMSRLGTSVTKVTAEDADDPTVAGHATVTYQI 146
Query: 419 VGGNEGGEFNINPETGMLYTAVTLDAEDKAFYTLTVSAIDQGNAGTRKQSAAKVKVNIVD 478
+ GNE F ++ + LD E ++ Y + V A D S A V + + D
Sbjct: 147 IKGNE--YFTVDDSGVIFTARADLDRESQSAYEIIVKAKDALGLTGES-STATVIIRLTD 203
Score = 123 bits (311), Expect = 4e-32
Identities = 53/208 (25%), Positives = 82/208 (39%), Gaps = 24/208 (11%)
Query: 489 PEMEVSINENEPAGTSVIKVTAKDKDSGENAYISYSI----ANLKPVPFEIDHFSGVIKT 544
M + + P V K+T+ N Y I AN F++ + G I
Sbjct: 5 NRMHIREEIDSPLPHHVGKLTSSV----GNKNAMYIIEGESANTI---FKVQGYDGDIYA 57
Query: 545 TQVLDYESMRREYILRVRASDWGLPYRRQTEMQLKIKLLDVNDNRPQFEKVDCLGHVPRN 604
+ LD E + EY L D + + IK+ D+NDN P F + G VP
Sbjct: 58 FERLDREK-KAEYELTAHIIDRRNNRSLEPPSKFIIKVSDINDNAPIFVQKIFNGSVPEM 116
Query: 605 LPIGREIITLSAIDFDAGNI-----ISYRIVSGNEDGCFALDITSGVLSIACDLTDVRVN 659
+G + ++A D D + ++Y+I+ GNE F +D + + + DL D
Sbjct: 117 SRLGTSVTKVTAEDADDPTVAGHATVTYQIIKGNEY--FTVDDSGVIFTARADL-DRESQ 173
Query: 660 ER-EINVTATDSA---HFSDVVRIRINL 683
EI V A D+ S + I L
Sbjct: 174 SAYEIIVKAKDALGLTGESSTATVIIRL 201
Score = 123 bits (310), Expect = 5e-32
Identities = 44/194 (22%), Positives = 79/194 (40%), Gaps = 32/194 (16%)
Query: 72 DIRFKISSGDRDKFFKAEERLVGDFWFLLIRTRTGN---TDVLNRERKDKYILHIKATIT 128
+ + I + FK ++ G+ + L+RE+K +Y L
Sbjct: 32 NAMYIIEGESANTIFK-------------VQGYDGDIYAFERLDREKKAEYELTAHII-- 76
Query: 129 HRDGKKASYEETTCKVHVNVLDTNDLNPLFYPTEYEETVPEDLPLHTSILRVSAEDAD-- 186
D + E K + V D ND P+F + +VPE L TS+ +V+AEDAD
Sbjct: 77 --DRRNNRSLEPPSKFIIKVSDINDNAPIFVQKIFNGSVPEMSRLGTSVTKVTAEDADDP 134
Query: 187 -LGRNGEIYYSFRDMNEQFSIHPTSGVVTLTRPLKYTDRSVHDLVVLGQDRGSVFKGGGK 245
+ + + Y NE F++ + + T L +S ++++V +D G
Sbjct: 135 TVAGHATVTYQIIKGNEYFTVDDSGVIFTARADLDRESQSAYEIIVKAKD------ALGL 188
Query: 246 P---SSAKLKIKVE 256
S+A + I++
Sbjct: 189 TGESSTATVIIRLT 202
Score = 118 bits (299), Expect = 1e-30
Identities = 32/125 (25%), Positives = 57/125 (45%), Gaps = 8/125 (6%)
Query: 966 PNYSVKVREDIPVGTVVAILSASDPDLGQGGVVRYTIVSDNEADDVFSIDRLTGTIRVAK 1025
++ D P+ V L++S + Y I ++ A+ +F + G I +
Sbjct: 5 NRMHIREEIDSPLPHHVGKLTSSVGN----KNAMYIIEGES-ANTIFKVQGYDGDIYAFE 59
Query: 1026 PLDFEKRQVHSLVVRAKD-NGSPPLYSEATLIVEVSDVNENMNAPVFSDFVYQATVKENQ 1084
LD EK+ + L D + L + I++VSD+N+N AP+F ++ +V E
Sbjct: 60 RLDREKKAEYELTAHIIDRRNNRSLEPPSKFIIKVSDINDN--APIFVQKIFNGSVPEMS 117
Query: 1085 PIGTS 1089
+GTS
Sbjct: 118 RLGTS 122
Score = 79.3 bits (196), Expect = 7e-17
Identities = 27/109 (24%), Positives = 45/109 (41%), Gaps = 6/109 (5%)
Query: 744 ENVHVPEFFSFPIELQVNESVPLKSTLTKIIARDRD---LGYNGKLVFGISSGDNDSVFR 800
N + P F V E L +++TK+ A D D + + + + I G + F
Sbjct: 97 INDNAPIFVQKIFNGSVPEMSRLGTSVTKVTAEDADDPTVAGHATVTYQIIKG--NEYFT 154
Query: 801 IDPDSGELKVVGYLDRERTSEYTLNITVYD-LGKPQKSTSKMLPITILD 848
+D LDRE S Y + + D LG +S++ + I + D
Sbjct: 155 VDDSGVIFTARADLDRESQSAYEIIVKAKDALGLTGESSTATVIIRLTD 203
Score = 43.5 bits (103), Expect = 1e-04
Identities = 27/122 (22%), Positives = 48/122 (39%), Gaps = 28/122 (22%)
Query: 36 RFTQKDYNVSISENSNSKTYVT-------PEEKMGIYRGTSEVDIRFKISSGDRDKFFKA 88
F QK +N S+ E S T VT + + + + ++I G+ +F
Sbjct: 103 IFVQKIFNGSVPEMSRLGTSVTKVTAEDADDPTVAGHA-----TVTYQIIKGNE--YFTV 155
Query: 89 EERLVGDFWFLLIRTRTGNTDVLNRERKDKYILHIKATITHRDGKKASYEETTCKVHVNV 148
++ V I T + L+RE + Y + +KA D + E +T V + +
Sbjct: 156 DDSGV-------IFTARAD---LDRESQSAYEIIVKAK----DALGLTGESSTATVIIRL 201
Query: 149 LD 150
D
Sbjct: 202 TD 203
>3k5r_A Cadherin 13; mouse, structural protein; 2.00A {Mus musculus} PDB:
3k5s_A
Length = 218
Score = 188 bits (479), Expect = 2e-54
Identities = 62/214 (28%), Positives = 90/214 (42%), Gaps = 15/214 (7%)
Query: 755 PIELQVNESVPLKSTLTKIIARDRDLGYNGKLVFGISSGDNDSVFRIDPDSGELKVVGYL 814
PI + N+ P + K++ DR G +L D FRI+ ++G + V L
Sbjct: 7 PILIPENQRQPFPRDVGKVVDSDRPEGSKFRLTGKGVDQDPKGTFRINENTGSVSVTRTL 66
Query: 815 DRERTSEYTLNITVYDLGKPQKSTSKMLPITILDVNDNPPKFEKSLASFRVTENALNGTV 874
DRE + Y L + D L + ++D NDN P F + V E + GT
Sbjct: 67 DRETIATYQLYVETTDASGKTLEGPVPLEVIVIDQNDNRPIFREGPYIGHVMEGSPTGTT 126
Query: 875 IFKVNATDLD--LGDNAKVVYSLMTDTQD------FAVDSATGSLYV---SASLDRERQD 923
+ ++ A D D DNA + Y++ T D F +D G + A LDRE +
Sbjct: 127 VMRMTAFDADDPATDNALLRYNIRQQTPDKPSPNMFYIDPEKGDIVTVVSPALLDRETLE 186
Query: 924 L--YELKIRASDCDGRNDMYTLHADALVRVTIDD 955
YEL I A D G + L A + IDD
Sbjct: 187 NPKYELIIEAQDMAGLDV--GLTGTATATIVIDD 218
Score = 174 bits (442), Expect = 1e-49
Identities = 57/218 (26%), Positives = 90/218 (41%), Gaps = 20/218 (9%)
Query: 860 LASFRVTENALN--GTVIFKVNATDLDLGDNAKVVYSLMTDTQD--FAVDSATGSLYVSA 915
++ + EN + KV +D G ++ + F ++ TGS+ V+
Sbjct: 5 VSPILIPENQRQPFPRDVGKVVDSDRPEGSKFRLTGKGVDQDPKGTFRINENTGSVSVTR 64
Query: 916 SLDRERQDLYELKIRASDCDGRNDMYTLHADALVRVTIDDINDNAPNFALPNYSVKVRED 975
+LDRE Y+L + +D G+ TL + V + D NDN P F Y V E
Sbjct: 65 TLDRETIATYQLYVETTDASGK----TLEGPVPLEVIVIDQNDNRPIFREGPYIGHVMEG 120
Query: 976 IPVGTVVAILSASDPDLGQG--GVVRYTIVS---DNEADDVFSIDRLTGTIRVAKP---L 1027
P GT V ++A D D ++RY I D + ++F ID G I L
Sbjct: 121 SPTGTTVMRMTAFDADDPATDNALLRYNIRQQTPDKPSPNMFYIDPEKGDIVTVVSPALL 180
Query: 1028 DFEKRQ--VHSLVVRAKDNG--SPPLYSEATLIVEVSD 1061
D E + + L++ A+D L AT + + D
Sbjct: 181 DRETLENPKYELIIEAQDMAGLDVGLTGTATATIVIDD 218
Score = 166 bits (421), Expect = 9e-47
Identities = 58/213 (27%), Positives = 90/213 (42%), Gaps = 14/213 (6%)
Query: 384 YEVDVPETTPVNTPIIRLKVSDADDGKNAQVFLEIVGGNEGGEFNINPETGMLYTAVTLD 443
+ + P + ++ SD +G ++ + V + G F IN TG + TLD
Sbjct: 8 ILIPENQRQPFPRDVGKVVDSDRPEGSKFRLTGKGVDQDPKGTFRINENTGSVSVTRTLD 67
Query: 444 AEDKAFYTLTVSAIDQGNAGTRKQSAAKVKVNIVDTNDNDPLFDSPEMEVSINENEPAGT 503
E A Y L V D G + ++V ++D NDN P+F + E P GT
Sbjct: 68 RETIATYQLYVETTDAS--GKTLEGPVPLEVIVIDQNDNRPIFREGPYIGHVMEGSPTGT 125
Query: 504 SVIKVTAKDKD--SGENAYISYSIANLKPVP-----FEIDHFSGVIKTTQ---VLDYESM 553
+V+++TA D D + +NA + Y+I P F ID G I T +LD E++
Sbjct: 126 TVMRMTAFDADDPATDNALLRYNIRQQTPDKPSPNMFYIDPEKGDIVTVVSPALLDRETL 185
Query: 554 RR-EYILRVRASDWG-LPYRRQTEMQLKIKLLD 584
+Y L + A D L I + D
Sbjct: 186 ENPKYELIIEAQDMAGLDVGLTGTATATIVIDD 218
Score = 153 bits (388), Expect = 2e-42
Identities = 59/205 (28%), Positives = 82/205 (40%), Gaps = 22/205 (10%)
Query: 285 VRVVDRDAGIHGEIASLDIVDGDPDGHFRIVPTKIDPGTKKKEYNIVVLKLLDREIAPLG 344
V DR G + + VD DP G FRI + T ++ V + LDRE
Sbjct: 25 VVDSDRPEGSKFRL-TGKGVDQDPKGTFRI-----NENT----GSVSVTRTLDRETIAT- 73
Query: 345 YNLTLRAVDKGTPPRETYKATQVHLVDLNDNKPVFDREIYEVDVPETTPVNTPIIRLKVS 404
Y L + D E +V ++D NDN+P+F Y V E +P T ++R+
Sbjct: 74 YQLYVETTDASGKTLEGPVPLEVIVIDQNDNRPIFREGPYIGHVMEGSPTGTTVMRMTAF 133
Query: 405 DADD--GKNAQVFLEIVGGN----EGGEFNINPETGMLYTAVT---LDAE--DKAFYTLT 453
DADD NA + I F I+PE G + T V+ LD E + Y L
Sbjct: 134 DADDPATDNALLRYNIRQQTPDKPSPNMFYIDPEKGDIVTVVSPALLDRETLENPKYELI 193
Query: 454 VSAIDQGNAGTRKQSAAKVKVNIVD 478
+ A D A + I D
Sbjct: 194 IEAQDMAGLDVGLTGTATATIVIDD 218
Score = 138 bits (349), Expect = 4e-37
Identities = 45/196 (22%), Positives = 79/196 (40%), Gaps = 16/196 (8%)
Query: 489 PEMEVSINENEPAGTSVIKVTAKDKDSGENAYISYSIANLKPV-PFEIDHFSGVIKTTQV 547
+ + N+ +P V KV D+ G ++ + P F I+ +G + T+
Sbjct: 6 SPILIPENQRQPFPRDVGKVVDSDRPEGSKFRLTGKGVDQDPKGTFRINENTGSVSVTRT 65
Query: 548 LDYESMRREYILRVRASDWGLPYRRQTEMQLKIKLLDVNDNRPQFEKVDCLGHVPRNLPI 607
LD E+ Y L V +D + + L++ ++D NDNRP F + +GHV P
Sbjct: 66 LDRET-IATYQLYVETTDASGK-TLEGPVPLEVIVIDQNDNRPIFREGPYIGHVMEGSPT 123
Query: 608 GREIITLSAIDFDAGN----IISYRIVSGNED----GCFALDITSGVLSIAC-----DLT 654
G ++ ++A D D ++ Y I D F +D G + D
Sbjct: 124 GTTVMRMTAFDADDPATDNALLRYNIRQQTPDKPSPNMFYIDPEKGDIVTVVSPALLDRE 183
Query: 655 DVRVNEREINVTATDS 670
+ + E+ + A D
Sbjct: 184 TLENPKYELIIEAQDM 199
Score = 131 bits (331), Expect = 1e-34
Identities = 33/126 (26%), Positives = 48/126 (38%), Gaps = 3/126 (2%)
Query: 964 ALPNYSVKVREDIPVGTVVAILSASDPDLGQGGVVRYTIVSDNEADDVFSIDRLTGTIRV 1023
+ + + P V + SD G + V D + F I+ TG++ V
Sbjct: 4 VVSPILIPENQRQPFPRDVGKVVDSDRPEGSKFRLTGKGV-DQDPKGTFRINENTGSVSV 62
Query: 1024 AKPLDFEKRQVHSLVVRAKDNGSPPLYSEATLIVEVSDVNENMNAPVFSDFVYQATVKEN 1083
+ LD E + L V D L L V V D N+ N P+F + Y V E
Sbjct: 63 TRTLDRETIATYQLYVETTDASGKTLEGPVPLEVIVIDQND--NRPIFREGPYIGHVMEG 120
Query: 1084 QPIGTS 1089
P GT+
Sbjct: 121 SPTGTT 126
Score = 104 bits (260), Expect = 3e-25
Identities = 47/200 (23%), Positives = 73/200 (36%), Gaps = 36/200 (18%)
Query: 73 IRFKISSGDRDKFFKAEERLVGDFWFLLIRTRTGN---TDVLNRERKDKYILHIKATITH 129
+ K D F+ I TG+ T L+RE Y L+++ T
Sbjct: 38 LTGKGVDQDPKGTFR-------------INENTGSVSVTRTLDRETIATYQLYVETT--D 82
Query: 130 RDGKKASYEETTCKVHVNVLDTNDLNPLFYPTEYEETVPEDLPLHTSILRVSAEDAD--L 187
GK E + V V+D ND P+F Y V E P T+++R++A DAD
Sbjct: 83 ASGKTL---EGPVPLEVIVIDQNDNRPIFREGPYIGHVMEGSPTGTTVMRMTAFDADDPA 139
Query: 188 GRNGEIYYSF------RDMNEQFSIHPTSGVVTLTRPLKYTDR-----SVHDLVVLGQDR 236
N + Y+ + F I P G + DR ++L++ QD
Sbjct: 140 TDNALLRYNIRQQTPDKPSPNMFYIDPEKGDIVTVVSPALLDRETLENPKYELIIEAQDM 199
Query: 237 GSVFKGGGKPSSAKLKIKVE 256
G +A I ++
Sbjct: 200 AG--LDVGLTGTATATIVID 217
Score = 67.8 bits (166), Expect = 9e-13
Identities = 32/118 (27%), Positives = 48/118 (40%), Gaps = 13/118 (11%)
Query: 744 ENVHVPEFFSFPIELQVNESVPLKSTLTKIIARDRD--LGYNGKLVFGISSGDND----S 797
+N + P F P V E P +T+ ++ A D D N L + I D +
Sbjct: 101 QNDNRPIFREGPYIGHVMEGSPTGTTVMRMTAFDADDPATDNALLRYNIRQQTPDKPSPN 160
Query: 798 VFRIDPDSGELKVV---GYLDRER--TSEYTLNITVYDLGK--PQKSTSKMLPITILD 848
+F IDP+ G++ V LDRE +Y L I D+ + + I I D
Sbjct: 161 MFYIDPEKGDIVTVVSPALLDRETLENPKYELIIEAQDMAGLDVGLTGTATATIVIDD 218
Score = 37.0 bits (86), Expect = 0.019
Identities = 24/127 (18%), Positives = 38/127 (29%), Gaps = 27/127 (21%)
Query: 36 RFTQKDYNVSISENSNSKTYVT------PEEKMGIYRGTSEVDIRFKISSGDRDKFFKAE 89
F + Y + E S + T V ++ +R+ I DK
Sbjct: 107 IFREGPYIGHVMEGSPTGTTVMRMTAFDADDPATDN-----ALLRYNIRQQTPDKPSPNM 161
Query: 90 ---ERLVGDFWFLLIRTRTGNTDVLNRERKD--KYILHIKATITHRD-GKKASYEETTCK 143
+ G I T L+RE + KY L I+A +D T
Sbjct: 162 FYIDPEKG-----DIVTVVSPAL-LDRETLENPKYELIIEA----QDMAGLDVGLTGTAT 211
Query: 144 VHVNVLD 150
+ + D
Sbjct: 212 ATIVIDD 218
>2qvi_A Cadherin-2; beta barrel, strand SWAP, domain SWAP, calcium, cell
adhesion, cleavage on PAIR of basic residues,
glycoprotein, membrane; 3.01A {Mus musculus} SCOP:
b.1.6.1 b.1.6.1 PDB: 1ncj_A
Length = 215
Score = 187 bits (477), Expect = 3e-54
Identities = 60/214 (28%), Positives = 98/214 (45%), Gaps = 20/214 (9%)
Query: 863 FRVTENALNGTVIFKVNATDLDLGDNAKVVYSLMTDTQD------FAVDSATGSLYVSAS 916
+ EN+ G ++ D N + YS+ D F ++ +G L V+
Sbjct: 7 INLPENS-RGPFPQELVRIRSDRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKP 65
Query: 917 LDRERQDLYELKIRASDCDGRNDMYTLHADALVRVTIDDINDNAPNFALPNYSVKVREDI 976
LDRE + L+ A D +G + + + + D+NDN P F ++ V E
Sbjct: 66 LDRELIARFHLRAHAVDING----NQVENPIDIVINVIDMNDNRPEFLHQVWNGSVPEGS 121
Query: 977 PVGTVVAILSASDPDLGQG--GVVRYTIVSDNEADD---VFSIDRLTGTIR-VAKPLDFE 1030
GT V ++A D D G++RY I+S + +F+I+ TG I VA LD E
Sbjct: 122 KPGTYVMTVTAIDADDPNALNGMLRYRILSQAPSTPSPNMFTINNETGDIITVAAGLDRE 181
Query: 1031 KRQVHSLVVRAKDNGSPP---LYSEATLIVEVSD 1061
K Q ++L+++A D P L + AT ++ V+D
Sbjct: 182 KVQQYTLIIQATDMEGNPTYGLSNTATAVITVTD 215
Score = 177 bits (450), Expect = 1e-50
Identities = 61/219 (27%), Positives = 99/219 (45%), Gaps = 17/219 (7%)
Query: 750 EFFSFPIELQVNESVPLKSTLTKIIARDRDLGYNGKLVFGISSGDND----SVFRIDPDS 805
++ PI L N P +++ D N L + ++ D +F I+P S
Sbjct: 1 DWVIPPINLPENSRGPF---PQELVRIRSDRDKNLSLRYSVTGPGADQPPTGIFIINPIS 57
Query: 806 GELKVVGYLDRERTSEYTLNITVYDLGKPQKSTSKMLPITILDVNDNPPKFEKSLASFRV 865
G+L V LDRE + + L D+ Q + I ++D+NDN P+F + + V
Sbjct: 58 GQLSVTKPLDRELIARFHLRAHAVDINGNQVENPIDIVINVIDMNDNRPEFLHQVWNGSV 117
Query: 866 TENALNGTVIFKVNATDLDL--GDNAKVVYSLMTDTQD------FAVDSATGSLY-VSAS 916
E + GT + V A D D N + Y +++ F +++ TG + V+A
Sbjct: 118 PEGSKPGTYVMTVTAIDADDPNALNGMLRYRILSQAPSTPSPNMFTINNETGDIITVAAG 177
Query: 917 LDRERQDLYELKIRASDCDGRNDMYTLHADALVRVTIDD 955
LDRE+ Y L I+A+D +G N Y L A +T+ D
Sbjct: 178 LDREKVQQYTLIIQATDMEG-NPTYGLSNTATAVITVTD 215
Score = 162 bits (411), Expect = 2e-45
Identities = 59/216 (27%), Positives = 90/216 (41%), Gaps = 18/216 (8%)
Query: 383 IYEVDVPETTPVNTPIIRLKVSDADDGKNAQVFLEIVGGNEG----GEFNINPETGMLYT 438
I +++PE + L +D KN + + G G F INP +G L
Sbjct: 4 IPPINLPENSR-GPFPQELVRIRSDRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSV 62
Query: 439 AVTLDAEDKAFYTLTVSAIDQGNAGTRKQSAAKVKVNIVDTNDNDPLFDSPEMEVSINEN 498
LD E A + L A+D G + ++ + +N++D NDN P F S+ E
Sbjct: 63 TKPLDRELIARFHLRAHAVDIN--GNQVENPIDIVINVIDMNDNRPEFLHQVWNGSVPEG 120
Query: 499 EPAGTSVIKVTAKDKD--SGENAYISYSIANLKPVP-----FEIDHFSGVIKTTQ-VLDY 550
GT V+ VTA D D + N + Y I + P F I++ +G I T LD
Sbjct: 121 SKPGTYVMTVTAIDADDPNALNGMLRYRILSQAPSTPSPNMFTINNETGDIITVAAGLDR 180
Query: 551 ESMRREYILRVRASDWGLP--YRRQTEMQLKIKLLD 584
E ++Y L ++A+D Y I + D
Sbjct: 181 EK-VQQYTLIIQATDMEGNPTYGLSNTATAVITVTD 215
Score = 143 bits (362), Expect = 6e-39
Identities = 53/205 (25%), Positives = 84/205 (40%), Gaps = 21/205 (10%)
Query: 285 VRVVDRDAGIHGEIA---SLDIVDGDPDGHFRIVPTKIDPGTKKKEYNIVVLKLLDREIA 341
+ + D + + + D P G F I +P + + V K LDRE+
Sbjct: 21 LVRIRSDRDKNLSLRYSVTGPGADQPPTGIFII-----NPIS----GQLSVTKPLDRELI 71
Query: 342 PLGYNLTLRAVDKGTPPRETYKATQVHLVDLNDNKPVFDREIYEVDVPETTPVNTPIIRL 401
++L AVD E ++++D+NDN+P F +++ VPE + T ++ +
Sbjct: 72 AR-FHLRAHAVDINGNQVENPIDIVINVIDMNDNRPEFLHQVWNGSVPEGSKPGTYVMTV 130
Query: 402 KVSDADD--GKNAQVFLEIVGGNEGGE----FNINPETGMLYTAVT-LDAEDKAFYTLTV 454
DADD N + I+ F IN ETG + T LD E YTL +
Sbjct: 131 TAIDADDPNALNGMLRYRILSQAPSTPSPNMFTINNETGDIITVAAGLDREKVQQYTLII 190
Query: 455 SAIDQ-GNAGTRKQSAAKVKVNIVD 478
A D GN + A + + D
Sbjct: 191 QATDMEGNPTYGLSNTATAVITVTD 215
Score = 135 bits (342), Expect = 3e-36
Identities = 51/211 (24%), Positives = 91/211 (43%), Gaps = 22/211 (10%)
Query: 492 EVSINENEPAGTSVIKVTAKDKDSGENAYISYSI----ANLKPV-PFEIDHFSGVIKTTQ 546
+++ EN G ++ D +N + YS+ A+ P F I+ SG + T+
Sbjct: 6 PINLPENSR-GPFPQELVRIRSDRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTK 64
Query: 547 VLDYESMRREYILRVRASDWGLPYRRQTEMQLKIKLLDVNDNRPQFEKVDCLGHVPRNLP 606
LD E + + LR A D + + + + I ++D+NDNRP+F G VP
Sbjct: 65 PLDRE-LIARFHLRAHAVDINGN-QVENPIDIVINVIDMNDNRPEFLHQVWNGSVPEGSK 122
Query: 607 IGREIITLSAIDFDAGN----IISYRIVSGN----EDGCFALDITSGVLSIACDLTDVRV 658
G ++T++AID D N ++ YRI+S F ++ +G + D
Sbjct: 123 PGTYVMTVTAIDADDPNALNGMLRYRILSQAPSTPSPNMFTINNETGDIITVAAGLDREK 182
Query: 659 NER-EINVTATD-----SAHFSDVVRIRINL 683
++ + + ATD + S+ I +
Sbjct: 183 VQQYTLIIQATDMEGNPTYGLSNTATAVITV 213
Score = 127 bits (320), Expect = 3e-33
Identities = 30/123 (24%), Positives = 51/123 (41%), Gaps = 6/123 (4%)
Query: 970 VKVREDIPVGTVVAILSASDPDLGQGGVVRYTIVS---DNEADDVFSIDRLTGTIRVAKP 1026
+ + E+ G L D + +RY++ D +F I+ ++G + V KP
Sbjct: 7 INLPENSR-GPFPQELVRIRSDRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKP 65
Query: 1027 LDFEKRQVHSLVVRAKDNGSPPLYSEATLIVEVSDVNENMNAPVFSDFVYQATVKENQPI 1086
LD E L A D + + +++ V D+N+ N P F V+ +V E
Sbjct: 66 LDRELIARFHLRAHAVDINGNQVENPIDIVINVIDMND--NRPEFLHQVWNGSVPEGSKP 123
Query: 1087 GTS 1089
GT
Sbjct: 124 GTY 126
Score = 101 bits (254), Expect = 2e-24
Identities = 44/197 (22%), Positives = 74/197 (37%), Gaps = 27/197 (13%)
Query: 72 DIRFKISSGDRDKFFKAEERLVGDFWFLLIRTRTGN---TDVLNRERKDKYILHIKATIT 128
+R+ ++ A++ G F +I +G T L+RE ++ L A
Sbjct: 33 SLRYSVTGPG------ADQPPTGIF---IINPISGQLSVTKPLDRELIARFHLRAHAV-- 81
Query: 129 HRDGKKASYEETTCKVHVNVLDTNDLNPLFYPTEYEETVPEDLPLHTSILRVSAEDADL- 187
D E + +NV+D ND P F + +VPE T ++ V+A DAD
Sbjct: 82 --DINGNQVENPI-DIVINVIDMNDNRPEFLHQVWNGSVPEGSKPGTYVMTVTAIDADDP 138
Query: 188 -GRNGEIYYSF------RDMNEQFSIHPTSGVV-TLTRPLKYTDRSVHDLVVLGQDRGSV 239
NG + Y F+I+ +G + T+ L + L++ D
Sbjct: 139 NALNGMLRYRILSQAPSTPSPNMFTINNETGDIITVAAGLDREKVQQYTLIIQATDMEGN 198
Query: 240 FKGGGKPSSAKLKIKVE 256
G ++A I V
Sbjct: 199 PTYGLS-NTATAVITVT 214
Score = 88.2 bits (219), Expect = 8e-20
Identities = 47/227 (20%), Positives = 82/227 (36%), Gaps = 37/227 (16%)
Query: 166 TVPEDLPLHTSILRVSAEDADLGRNGEIYYSF------RDMNEQFSIHPTSGVVTLTRPL 219
+PE+ + +D +N + YS + F I+P SG +++T+PL
Sbjct: 8 NLPENSRG-PFPQELVRIRSDRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKPL 66
Query: 220 KYTDRSVHDLVVLGQDRGSVFKGGGKPSSAKLKIKVEQIN----LYGPEIYVQSLPDIVE 275
+ L D G + + I V +N + +++ S+P E
Sbjct: 67 DRELIARFHLRAHAVDIN----GNQVENPIDIVINVIDMNDNRPEFLHQVWNGSVP---E 119
Query: 276 QSYADIYAI-VRVVDRD--AGIHGEIASLDIVDGDP----DGHFRIVPTKIDPGTKKKEY 328
S Y + V +D D ++G + I+ P F I+ T
Sbjct: 120 GSKPGTYVMTVTAIDADDPNALNGML-RYRILSQAPSTPSPNMFT-----INNET----G 169
Query: 329 NIV-VLKLLDREIAPLGYNLTLRAVDKGTPPRETYKATQVHLVDLND 374
+I+ V LDRE Y L ++A D P T ++ + D
Sbjct: 170 DIITVAAGLDREKVQQ-YTLIIQATDMEGNPTYGLSNTATAVITVTD 215
Score = 74.3 bits (183), Expect = 5e-15
Identities = 31/115 (26%), Positives = 49/115 (42%), Gaps = 10/115 (8%)
Query: 744 ENVHVPEFFSFPIELQVNESVPLKSTLTKIIARDRDL--GYNGKLVFGISSG----DNDS 797
N + PEF V E + + + A D D NG L + I S + +
Sbjct: 101 MNDNRPEFLHQVWNGSVPEGSKPGTYVMTVTAIDADDPNALNGMLRYRILSQAPSTPSPN 160
Query: 798 VFRIDPDSGELKVV-GYLDRERTSEYTLNITVYDLGKPQK---STSKMLPITILD 848
+F I+ ++G++ V LDRE+ +YTL I D+ S + IT+ D
Sbjct: 161 MFTINNETGDIITVAAGLDREKVQQYTLIIQATDMEGNPTYGLSNTATAVITVTD 215
Score = 42.0 bits (99), Expect = 5e-04
Identities = 26/127 (20%), Positives = 42/127 (33%), Gaps = 30/127 (23%)
Query: 36 RFTQKDYNVSISENSNSKTYVT------PEEKMGIYRGTSEVDIRFKISSGDRDKFFKAE 89
F + +N S+ E S TYV ++ + +R++I S
Sbjct: 107 EFLHQVWNGSVPEGSKPGTYVMTVTAIDADDPNALN-----GMLRYRILSQ--------A 153
Query: 90 ERLVGDFWFLL------IRTRTGNTDVLNRERKDKYILHIKATITHRDGKKASYEETTCK 143
F + I T L+RE+ +Y L I+A T +G T
Sbjct: 154 PSTPSPNMFTINNETGDIITVAAG---LDREKVQQYTLIIQA--TDMEGNPTYGLSNTAT 208
Query: 144 VHVNVLD 150
+ V D
Sbjct: 209 AVITVTD 215
>3lnd_A CDH6 protein, cadherin 6; cell adhesion, cell membrane, membrane,
transmembr; 2.82A {Mus musculus}
Length = 207
Score = 184 bits (470), Expect = 2e-53
Identities = 60/201 (29%), Positives = 95/201 (47%), Gaps = 8/201 (3%)
Query: 760 VNESVPLKSTLTKIIARDRDLGYNGKLVFGISSGDNDSVFRIDPDSGELKVVGYLDRERT 819
+ E + D+D G +G L + +S +F I+ ++G+++ LDRE
Sbjct: 10 LEEYTGSDYQYVGKLHSDQDRG-DGSLKYILSGDGAGDLFIINENTGDIQATKRLDREEK 68
Query: 820 SEYTLNITVYDLG-KPQKSTSKMLPITILDVNDNPPKFEKSLASFRVTENALNGTVIFKV 878
Y L + I I D+NDN P F K + + V E A GT + +V
Sbjct: 69 PVYILRAQAVNRRTGRPVEPESEFIIKIHDINDNEPIFTKDVYTATVPEMADVGTFVVQV 128
Query: 879 NATDLD---LGDNAKVVYSLMTDTQDFAVDSATGSLYV-SASLDRERQDLYELKIRASDC 934
ATD D G++AKVVYS++ F+V+S TG + ++DRE ++ Y++ I+A D
Sbjct: 129 TATDADDPTYGNSAKVVYSILQGQPYFSVESETGIIKTALLNMDRENREQYQVVIQAKDM 188
Query: 935 DGRNDMYTLHADALVRVTIDD 955
G M L V +T+ D
Sbjct: 189 GG--QMGGLSGTTTVNITLTD 207
Score = 182 bits (463), Expect = 1e-52
Identities = 57/207 (27%), Positives = 94/207 (45%), Gaps = 15/207 (7%)
Query: 863 FRVTENALNGTVIFKVNATDLDLGDNAKVVYSLMTDTQD--FAVDSATGSLYVSASLDRE 920
F + E + +D D G + + Y L D F ++ TG + + LDRE
Sbjct: 8 FLLEEYTGSDYQYVGKLHSDQDRG-DGSLKYILSGDGAGDLFIINENTGDIQATKRLDRE 66
Query: 921 RQDLYELKIRASDCDGRNDMYTLHADALVRVTIDDINDNAPNFALPNYSVKVREDIPVGT 980
+ +Y L+ +A + + ++ + I DINDN P F Y+ V E VGT
Sbjct: 67 EKPVYILRAQAVNRRTGRP---VEPESEFIIKIHDINDNEPIFTKDVYTATVPEMADVGT 123
Query: 981 VVAILSASDPD---LGQGGVVRYTIVSDNEADDVFSIDRLTGTIRVA-KPLDFEKRQVHS 1036
V ++A+D D G V Y+I+ FS++ TG I+ A +D E R+ +
Sbjct: 124 FVVQVTATDADDPTYGNSAKVVYSILQGQ---PYFSVESETGIIKTALLNMDRENREQYQ 180
Query: 1037 LVVRAKDNGSP--PLYSEATLIVEVSD 1061
+V++AKD G L T+ + ++D
Sbjct: 181 VVIQAKDMGGQMGGLSGTTTVNITLTD 207
Score = 170 bits (433), Expect = 2e-48
Identities = 58/206 (28%), Positives = 94/206 (45%), Gaps = 9/206 (4%)
Query: 384 YEVDVPETTPVNTPIIRLKVSDADDGKNAQVFLEIVGGNEGGEFNINPETGMLYTAVTLD 443
+ E T + + SD D G + + + G G F IN TG + LD
Sbjct: 6 QFFLLEEYTGSDYQYVGKLHSDQDRG-DGSLKYILSGDGAGDLFIINENTGDIQATKRLD 64
Query: 444 AEDKAFYTLTVSAIDQGNAGTRKQSAAKVKVNIVDTNDNDPLFDSPEMEVSINENEPAGT 503
E+K Y L A+++ G + ++ + I D NDN+P+F ++ E GT
Sbjct: 65 REEKPVYILRAQAVNRRT-GRPVEPESEFIIKIHDINDNEPIFTKDVYTATVPEMADVGT 123
Query: 504 SVIKVTAKDKDS---GENAYISYSIANLKPVPFEIDHFSGVIKTTQV-LDYESMRREYIL 559
V++VTA D D G +A + YSI +P F ++ +G+IKT + +D E+ R +Y +
Sbjct: 124 FVVQVTATDADDPTYGNSAKVVYSILQGQPY-FSVESETGIIKTALLNMDREN-REQYQV 181
Query: 560 RVRASDWGLPYR-RQTEMQLKIKLLD 584
++A D G + I L D
Sbjct: 182 VIQAKDMGGQMGGLSGTTTVNITLTD 207
Score = 146 bits (370), Expect = 5e-40
Identities = 52/181 (28%), Positives = 87/181 (48%), Gaps = 17/181 (9%)
Query: 303 IVDGDPDGHFRIVPTKIDPGTKKKEYNIVVLKLLDREIAPLGYNLTLRAVDKGT-PPRET 361
+ F I + T +I K LDRE P+ Y L +AV++ T P E
Sbjct: 39 LSGDGAGDLFII-----NENT----GDIQATKRLDREEKPV-YILRAQAVNRRTGRPVEP 88
Query: 362 YKATQVHLVDLNDNKPVFDREIYEVDVPETTPVNTPIIRLKVSDADD---GKNAQVFLEI 418
+ + D+NDN+P+F +++Y VPE V T ++++ +DADD G +A+V I
Sbjct: 89 ESEFIIKIHDINDNEPIFTKDVYTATVPEMADVGTFVVQVTATDADDPTYGNSAKVVYSI 148
Query: 419 VGGNEGGEFNINPETGMLYTAV-TLDAEDKAFYTLTVSAIDQGNAGTRKQSAAKVKVNIV 477
+ G F++ ETG++ TA+ +D E++ Y + + A D G V + +
Sbjct: 149 LQGQP--YFSVESETGIIKTALLNMDRENREQYQVVIQAKDMGGQMGGLSGTTTVNITLT 206
Query: 478 D 478
D
Sbjct: 207 D 207
Score = 130 bits (328), Expect = 2e-34
Identities = 47/202 (23%), Positives = 86/202 (42%), Gaps = 15/202 (7%)
Query: 493 VSINENEPAGTSVIKVTAKDKDSGENAYISYSIA-NLKPVPFEIDHFSGVIKTTQVLDYE 551
+ E + + D+D G+ + + Y ++ + F I+ +G I+ T+ LD E
Sbjct: 8 FLLEEYTGSDYQYVGKLHSDQDRGDGS-LKYILSGDGAGDLFIINENTGDIQATKRLDRE 66
Query: 552 SMRREYILRVRASDWGLPYRRQTEMQLKIKLLDVNDNRPQFEKVDCLGHVPRNLPIGREI 611
+ YILR +A + + E + IK+ D+NDN P F K VP +G +
Sbjct: 67 E-KPVYILRAQAVNRRTGRPVEPESEFIIKIHDINDNEPIFTKDVYTATVPEMADVGTFV 125
Query: 612 ITLSAIDFDAGNI-----ISYRIVSGNEDGCFALDITSGVLSIACDLTDVRVNER-EINV 665
+ ++A D D + Y I+ G F+++ +G++ A D E+ ++ +
Sbjct: 126 VQVTATDADDPTYGNSAKVVYSILQGQPY--FSVESETGIIKTALLNMDRENREQYQVVI 183
Query: 666 TATD----SAHFSDVVRIRINL 683
A D S + I L
Sbjct: 184 QAKDMGGQMGGLSGTTTVNITL 205
Score = 127 bits (320), Expect = 2e-33
Identities = 39/126 (30%), Positives = 63/126 (50%), Gaps = 5/126 (3%)
Query: 965 LPNYSVKVREDIPVGTVVAILSASDPDLGQGGVVRYTIVSDNEADDVFSIDRLTGTIRVA 1024
+ N + E SD D G G ++Y + D A D+F I+ TG I+
Sbjct: 3 MANQFFLLEEYTGSDYQYVGKLHSDQDRGDG-SLKYILSGDG-AGDLFIINENTGDIQAT 60
Query: 1025 KPLDFEKRQVHSLVVRAKDNGS-PPLYSEATLIVEVSDVNENMNAPVFSDFVYQATVKEN 1083
K LD E++ V+ L +A + + P+ E+ I+++ D+N+N P+F+ VY ATV E
Sbjct: 61 KRLDREEKPVYILRAQAVNRRTGRPVEPESEFIIKIHDINDN--EPIFTKDVYTATVPEM 118
Query: 1084 QPIGTS 1089
+GT
Sbjct: 119 ADVGTF 124
Score = 118 bits (297), Expect = 3e-30
Identities = 49/222 (22%), Positives = 87/222 (39%), Gaps = 28/222 (12%)
Query: 42 YNVSISENSNSKTYVTPEEKMGIYRGTSEVDIRFKISSGDRDKFFKAEERLVGDFWFLLI 101
+ E + S + RG +++ +S F I
Sbjct: 6 QFFLLEEYTGSDYQYVGKLHSDQDRGDGS--LKYILSGDGAGDLFI-------------I 50
Query: 102 RTRTGN---TDVLNRERKDKYILHIKATITHRDGKKASYEETTCKVHVNVLDTNDLNPLF 158
TG+ T L+RE K YIL +A + + E + + + D ND P+F
Sbjct: 51 NENTGDIQATKRLDREEKPVYILRAQAV----NRRTGRPVEPESEFIIKIHDINDNEPIF 106
Query: 159 YPTEYEETVPEDLPLHTSILRVSAEDAD---LGRNGEIYYSFRDMNEQFSIHPTSGVV-T 214
Y TVPE + T +++V+A DAD G + ++ YS FS+ +G++ T
Sbjct: 107 TKDVYTATVPEMADVGTFVVQVTATDADDPTYGNSAKVVYSILQGQPYFSVESETGIIKT 166
Query: 215 LTRPLKYTDRSVHDLVVLGQDRGSVFKGGGKPSSAKLKIKVE 256
+ +R + +V+ +D G + GG + + I +
Sbjct: 167 ALLNMDRENREQYQVVIQAKDMGG--QMGGLSGTTTVNITLT 206
Score = 76.2 bits (188), Expect = 1e-15
Identities = 27/111 (24%), Positives = 48/111 (43%), Gaps = 8/111 (7%)
Query: 744 ENVHVPEFFSFPIELQVNESVPLKSTLTKIIARDRD---LGYNGKLVFGISSGDNDSVFR 800
N + P F V E + + + ++ A D D G + K+V+ I G F
Sbjct: 99 INDNEPIFTKDVYTATVPEMADVGTFVVQVTATDADDPTYGNSAKVVYSILQG--QPYFS 156
Query: 801 IDPDSGELKVV-GYLDRERTSEYTLNITVYDLGKPQK--STSKMLPITILD 848
++ ++G +K +DRE +Y + I D+G S + + IT+ D
Sbjct: 157 VESETGIIKTALLNMDRENREQYQVVIQAKDMGGQMGGLSGTTTVNITLTD 207
Score = 44.2 bits (105), Expect = 7e-05
Identities = 25/123 (20%), Positives = 49/123 (39%), Gaps = 28/123 (22%)
Query: 36 RFTQKDYNVSISENSNSKTYVTP-------EEKMGIYRGTSEVDIRFKISSGDRDKFFKA 88
FT+ Y ++ E ++ T+V + G + + + I G F +
Sbjct: 105 IFTKDVYTATVPEMADVGTFVVQVTATDADDPTYG-----NSAKVVYSILQGQ-PYF--S 156
Query: 89 EERLVGDFWFLLIRTRTGNTDVLNRERKDKYILHIKATITHRD-GKKASYEETTCKVHVN 147
E G +I+T N ++RE +++Y + I+A D G + T V++
Sbjct: 157 VESETG-----IIKTALLN---MDRENREQYQVVIQAK----DMGGQMGGLSGTTTVNIT 204
Query: 148 VLD 150
+ D
Sbjct: 205 LTD 207
>2yst_A Protocadherin-7; BH-PCDH, beta-sandwich, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 119
Score = 138 bits (351), Expect = 1e-38
Identities = 34/120 (28%), Positives = 56/120 (46%), Gaps = 3/120 (2%)
Query: 951 VTIDDINDNAPNFALPNYSVKVREDIPVGTVVAILSASDPDLGQGGVVRYTIVSDNE-AD 1009
+ NDN+P F Y + E+ GT + L A+D D+G G + Y + E
Sbjct: 2 SSGSSGNDNSPRFEKSVYEADLAENSAPGTPILQLRAADLDVGVNGQIEYVFGAATESVR 61
Query: 1010 DVFSIDRLTGTIRVAKPLDFEKRQVHSLVVRAKDNGSPPLYSEATLIVEVSDVNENMNAP 1069
+ +D +G + V +D E+ V A+D G PP +AT+++ + D N+ N P
Sbjct: 62 RLLRLDETSGWLSVLHRIDREEVNQLRFTVMARDRGQPPKTDKATVVLNIKDEND--NVP 119
Score = 129 bits (328), Expect = 2e-35
Identities = 38/122 (31%), Positives = 55/122 (45%), Gaps = 8/122 (6%)
Query: 844 ITILDVNDNPPKFEKSLASFRVTENALNGTVIFKVNATDLDLGDNAKVVYSLMTDTQD-- 901
+ NDN P+FEKS+ + EN+ GT I ++ A DLD+G N ++ Y T+
Sbjct: 2 SSGSSGNDNSPRFEKSVYEADLAENSAPGTPILQLRAADLDVGVNGQIEYVFGAATESVR 61
Query: 902 --FAVDSATGSLYVSASLDRERQDLYELKIRASDCDGRNDMYTLHADALVRVTIDDINDN 959
+D +G L V +DRE + + A D A V + I D NDN
Sbjct: 62 RLLRLDETSGWLSVLHRIDREEVNQLRFTVMARDRGQ----PPKTDKATVVLNIKDENDN 117
Query: 960 AP 961
P
Sbjct: 118 VP 119
Score = 119 bits (300), Expect = 1e-31
Identities = 32/120 (26%), Positives = 49/120 (40%), Gaps = 5/120 (4%)
Query: 474 VNIVDTNDNDPLFDSPEMEVSINENEPAGTSVIKVTAKDKDSGENAYISYSIANLKPV-- 531
+ NDN P F+ E + EN GT ++++ A D D G N I Y
Sbjct: 2 SSGSSGNDNSPRFEKSVYEADLAENSAPGTPILQLRAADLDVGVNGQIEYVFGAATESVR 61
Query: 532 -PFEIDHFSGVIKTTQVLDYESMRREYILRVRASDWGLPYRRQTEMQLKIKLLDVNDNRP 590
+D SG + +D E + + V A D G P + + + + + D NDN P
Sbjct: 62 RLLRLDETSGWLSVLHRIDREEVNQ-LRFTVMARDRGQP-PKTDKATVVLNIKDENDNVP 119
Score = 115 bits (291), Expect = 1e-30
Identities = 37/116 (31%), Positives = 55/116 (47%), Gaps = 4/116 (3%)
Query: 371 DLNDNKPVFDREIYEVDVPETTPVNTPIIRLKVSDADDGKNAQV--FLEIVGGNEGGEFN 428
NDN P F++ +YE D+ E + TPI++L+ +D D G N Q+ +
Sbjct: 6 SGNDNSPRFEKSVYEADLAENSAPGTPILQLRAADLDVGVNGQIEYVFGAATESVRRLLR 65
Query: 429 INPETGMLYTAVTLDAEDKAFYTLTVSAIDQGNAGTRKQSAAKVKVNIVDTNDNDP 484
++ +G L +D E+ TV A D+G K A V +NI D NDN P
Sbjct: 66 LDETSGWLSVLHRIDREEVNQLRFTVMARDRG--QPPKTDKATVVLNIKDENDNVP 119
Score = 103 bits (260), Expect = 2e-26
Identities = 30/118 (25%), Positives = 52/118 (44%), Gaps = 8/118 (6%)
Query: 146 VNVLDTNDLNPLFYPTEYEETVPEDLPLHTSILRVSAEDADLGRNGEIYYSFRDMNEQ-- 203
+ ND +P F + YE + E+ T IL++ A D D+G NG+I Y F E
Sbjct: 2 SSGSSGNDNSPRFEKSVYEADLAENSAPGTPILQLRAADLDVGVNGQIEYVFGAATESVR 61
Query: 204 --FSIHPTSGVVTLTRPLKYTDRSVHDLVVLGQDRGSVFKGGGKPSSAKLKIKVEQIN 259
+ TSG +++ + + + V+ +DRG K A + + ++ N
Sbjct: 62 RLLRLDETSGWLSVLHRIDREEVNQLRFTVMARDRG----QPPKTDKATVVLNIKDEN 115
Score = 94.1 bits (235), Expect = 5e-23
Identities = 30/112 (26%), Positives = 53/112 (47%), Gaps = 2/112 (1%)
Query: 745 NVHVPEFFSFPIELQVNESVPLKSTLTKIIARDRDLGYNGKLVFGISSGDND--SVFRID 802
N + P F E + E+ + + ++ A D D+G NG++ + + + R+D
Sbjct: 8 NDNSPRFEKSVYEADLAENSAPGTPILQLRAADLDVGVNGQIEYVFGAATESVRRLLRLD 67
Query: 803 PDSGELKVVGYLDRERTSEYTLNITVYDLGKPQKSTSKMLPITILDVNDNPP 854
SG L V+ +DRE ++ + D G+P K+ + + I D NDN P
Sbjct: 68 ETSGWLSVLHRIDREEVNQLRFTVMARDRGQPPKTDKATVVLNIKDENDNVP 119
Score = 54.4 bits (132), Expect = 4e-09
Identities = 29/92 (31%), Positives = 36/92 (39%), Gaps = 6/92 (6%)
Query: 583 LDVNDNRPQFEKVDCLGHVPRNLPIGREIITLSAIDFDAGN--IISYRIVSGNEDGC--F 638
NDN P+FEK + N G I+ L A D D G I Y + E
Sbjct: 5 SSGNDNSPRFEKSVYEADLAENSAPGTPILQLRAADLDVGVNGQIEYVFGAATESVRRLL 64
Query: 639 ALDITSGVLSIACDLTDVRVNER-EINVTATD 669
LD TSG LS+ + D + V A D
Sbjct: 65 RLDETSGWLSVLHRI-DREEVNQLRFTVMARD 95
Score = 52.5 bits (127), Expect = 2e-08
Identities = 24/94 (25%), Positives = 38/94 (40%), Gaps = 11/94 (11%)
Query: 285 VRVVDRDAGIHGEIA-SLDIVDGDPDGHFRIVPTKIDPGTKKKEYNIVVLKLLDREIAPL 343
+R D D G++G+I R+ D + + VL +DRE
Sbjct: 36 LRAADLDVGVNGQIEYVFGAATESVRRLLRL-----DETSGW----LSVLHRIDREEVNQ 86
Query: 344 GYNLTLRAVDKGTPPRETYKATQVHLVDLNDNKP 377
T+ A D+G PP+ +++ D NDN P
Sbjct: 87 -LRFTVMARDRGQPPKTDKATVVLNIKDENDNVP 119
Score = 48.2 bits (116), Expect = 7e-07
Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
Query: 1057 VEVSDVNENMNAPVFSDFVYQATVKENQPIGTSL 1090
S N+N +P F VY+A + EN GT +
Sbjct: 2 SSGSSGNDN--SPRFEKSVYEADLAENSAPGTPI 33
Score = 39.0 bits (92), Expect = 0.001
Identities = 22/129 (17%), Positives = 41/129 (31%), Gaps = 38/129 (29%)
Query: 37 FTQKDYNVSISENSNSKTYVTPEEKMGIYRGTSEVDIRFKISSGDRD---------KFFK 87
F + Y ++ENS T + ++ + D D F
Sbjct: 14 FEKSVYEADLAENSAPGTPIL------------------QLRAADLDVGVNGQIEYVFGA 55
Query: 88 AEERLVGDFWFLLIRTRTG---NTDVLNRERKDKYILHIKATITHRDGKKASYEETTCKV 144
A E + + +G ++RE ++ + A RD + + V
Sbjct: 56 ATESVRRLLR---LDETSGWLSVLHRIDREEVNQLRFTVMA----RDRGQPP-KTDKATV 107
Query: 145 HVNVLDTND 153
+N+ D ND
Sbjct: 108 VLNIKDEND 116
>2ee0_A Protocadherin-9; Ca domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens}
Length = 114
Score = 129 bits (328), Expect = 1e-35
Identities = 39/115 (33%), Positives = 58/115 (50%), Gaps = 4/115 (3%)
Query: 951 VTIDDINDNAPNFALPNYSVKVREDIPVGTVVAILSASDPDLGQGGVVRYTIVSD--NEA 1008
+ NDN P F V + E+ PVGT V L A+D D+G +RY +
Sbjct: 2 SSGSSGNDNRPVFKEGQVEVHIPENAPVGTSVIQLHATDADIGSNAEIRYIFGAQVAPAT 61
Query: 1009 DDVFSIDRLTGTIRVAKPLDFEKRQVHSLVVRAKDNGSPPLYSEATLIVEVSDVN 1063
+F+++ TG I V + LD E+ +H + V A D S P + AT+ + V+DVN
Sbjct: 62 KRLFALNNTTGLITVQRSLDREETAIHKVTVLASDGSSTP--ARATVTINVTDVN 114
Score = 112 bits (284), Expect = 1e-29
Identities = 36/119 (30%), Positives = 59/119 (49%), Gaps = 11/119 (9%)
Query: 844 ITILDVNDNPPKFEKSLASFRVTENALNGTVIFKVNATDLDLGDNAKVVYSLMTDTQD-- 901
+ NDN P F++ + ENA GT + +++ATD D+G NA++ Y
Sbjct: 2 SSGSSGNDNRPVFKEGQVEVHIPENAPVGTSVIQLHATDADIGSNAEIRYIFGAQVAPAT 61
Query: 902 ---FAVDSATGSLYVSASLDRERQDLYELKIRASDCDGRNDMYTLHADALVRVTIDDIN 957
FA+++ TG + V SLDRE ++++ + ASD A A V + + D+N
Sbjct: 62 KRLFALNNTTGLITVQRSLDREETAIHKVTVLASDGSS------TPARATVTINVTDVN 114
Score = 106 bits (268), Expect = 2e-27
Identities = 40/117 (34%), Positives = 56/117 (47%), Gaps = 8/117 (6%)
Query: 474 VNIVDTNDNDPLFDSPEMEVSINENEPAGTSVIKVTAKDKDSGENAYISYSIANLKPV-- 531
+ NDN P+F ++EV I EN P GTSVI++ A D D G NA I Y
Sbjct: 2 SSGSSGNDNRPVFKEGQVEVHIPENAPVGTSVIQLHATDADIGSNAEIRYIFGAQVAPAT 61
Query: 532 --PFEIDHFSGVIKTTQVLDYESMRREYILRVRASDWGLPYRRQTEMQLKIKLLDVN 586
F +++ +G+I + LD E + + V ASD R T + I + DVN
Sbjct: 62 KRLFALNNTTGLITVQRSLDREETAI-HKVTVLASDGSSTPARAT---VTINVTDVN 114
Score = 106 bits (268), Expect = 2e-27
Identities = 41/117 (35%), Positives = 58/117 (49%), Gaps = 7/117 (5%)
Query: 367 VHLVDLNDNKPVFDREIYEVDVPETTPVNTPIIRLKVSDADDGKNAQV---FLEIVGGNE 423
NDN+PVF EV +PE PV T +I+L +DAD G NA++ F V
Sbjct: 2 SSGSSGNDNRPVFKEGQVEVHIPENAPVGTSVIQLHATDADIGSNAEIRYIFGAQVAPAT 61
Query: 424 GGEFNINPETGMLYTAVTLDAEDKAFYTLTVSAIDQGNAGTRKQSAAKVKVNIVDTN 480
F +N TG++ +LD E+ A + +TV A D + R A V +N+ D N
Sbjct: 62 KRLFALNNTTGLITVQRSLDREETAIHKVTVLASDGSSTPAR----ATVTINVTDVN 114
Score = 102 bits (257), Expect = 5e-26
Identities = 36/119 (30%), Positives = 61/119 (51%), Gaps = 11/119 (9%)
Query: 146 VNVLDTNDLNPLFYPTEYEETVPEDLPLHTSILRVSAEDADLGRNGEIYYSFR-----DM 200
+ ND P+F + E +PE+ P+ TS++++ A DAD+G N EI Y F
Sbjct: 2 SSGSSGNDNRPVFKEGQVEVHIPENAPVGTSVIQLHATDADIGSNAEIRYIFGAQVAPAT 61
Query: 201 NEQFSIHPTSGVVTLTRPLKYTDRSVHDLVVLGQDRGSVFKGGGKPSSAKLKIKVEQIN 259
F+++ T+G++T+ R L + ++H + VL D G P+ A + I V +N
Sbjct: 62 KRLFALNNTTGLITVQRSLDREETAIHKVTVLASD------GSSTPARATVTINVTDVN 114
Score = 77.5 bits (192), Expect = 4e-17
Identities = 24/109 (22%), Positives = 53/109 (48%), Gaps = 5/109 (4%)
Query: 745 NVHVPEFFSFPIELQVNESVPLKSTLTKIIARDRDLGYNGKLVFGISSGDNDSV---FRI 801
N + P F +E+ + E+ P+ +++ ++ A D D+G N ++ + + + F +
Sbjct: 8 NDNRPVFKEGQVEVHIPENAPVGTSVIQLHATDADIGSNAEIRYIFGAQVAPATKRLFAL 67
Query: 802 DPDSGELKVVGYLDRERTSEYTLNITVYDLGKPQKSTSKMLPITILDVN 850
+ +G + V LDRE T+ + + + D + + + I + DVN
Sbjct: 68 NNTTGLITVQRSLDREETAIHKVTVLASDGSSTP-ARATVT-INVTDVN 114
Score = 55.5 bits (135), Expect = 2e-09
Identities = 33/115 (28%), Positives = 52/115 (45%), Gaps = 15/115 (13%)
Query: 580 IKLLDVNDNRPQFE----KVDCLGHVPRNLPIGREIITLSAIDFDAGN--IISY---RIV 630
NDNRP F+ +V H+P N P+G +I L A D D G+ I Y V
Sbjct: 2 SSGSSGNDNRPVFKEGQVEV----HIPENAPVGTSVIQLHATDADIGSNAEIRYIFGAQV 57
Query: 631 SGNEDGCFALDITSGVLSIACDLTDVRVNER-EINVTATDSAHFSDVVRIRINLV 684
+ FAL+ T+G++++ L D ++ V A+D + + IN+
Sbjct: 58 APATKRLFALNNTTGLITVQRSL-DREETAIHKVTVLASDGSSTPARATVTINVT 111
Score = 47.8 bits (115), Expect = 8e-07
Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Query: 1057 VEVSDVNENMNAPVFSDFVYQATVKENQPIGTSL 1090
S N+N PVF + + + EN P+GTS+
Sbjct: 2 SSGSSGNDN--RPVFKEGQVEVHIPENAPVGTSV 33
Score = 35.1 bits (82), Expect = 0.023
Identities = 22/88 (25%), Positives = 36/88 (40%), Gaps = 16/88 (18%)
Query: 289 DRDAGIHGEIA-SLDI-VDGDPDGHFRIVPTKIDPGTKKKEYNIVVLKLLDREIAPLGYN 346
D D G + EI V F + + T I V + LDRE + +
Sbjct: 40 DADIGSNAEIRYIFGAQVAPATKRLFAL-----NNTTGL----ITVQRSLDREETAI-HK 89
Query: 347 LTLRAVDKGTPPRETYKAT-QVHLVDLN 373
+T+ A D + P +AT +++ D+N
Sbjct: 90 VTVLASDGSSTPA---RATVTINVTDVN 114
Score = 34.4 bits (80), Expect = 0.047
Identities = 23/127 (18%), Positives = 39/127 (30%), Gaps = 37/127 (29%)
Query: 37 FTQKDYNVSISENSNSKTYVT------PEEKMGIYRGTSEVD--IRFKISSGDRDKFFKA 88
F + V I EN+ T V + G +E+ +++ + F
Sbjct: 14 FKEGQVEVHIPENAPVGTSVIQLHATDADI--GSN---AEIRYIFGAQVAPATKRLF--- 65
Query: 89 EERLVGDFWFLLIRTRTG---NTDVLNRERKDKYILHIKATITHRDGKKASYEETTCKVH 145
+ TG L+RE + + + A+ DG V
Sbjct: 66 -----------ALNNTTGLITVQRSLDREETAIHKVTVLAS----DGSSTP---ARATVT 107
Query: 146 VNVLDTN 152
+NV D N
Sbjct: 108 INVTDVN 114
>1ncg_A N-cadherin; cell adhesion protein; 2.10A {Mus musculus} SCOP: b.1.6.1
PDB: 1nch_A 1nci_A
Length = 110
Score = 107 bits (270), Expect = 7e-28
Identities = 25/115 (21%), Positives = 47/115 (40%), Gaps = 8/115 (6%)
Query: 960 APNFALPNYSVKVREDIPVGTVVAILSASDPDLGQGGVVRYTIVS---DNEADDVFSIDR 1016
++ +P + + E+ G L + +RY++ D +F I+
Sbjct: 1 GSDWVIP--PINLPENSR-GPFPQELVRIRSGRDKNLSLRYSVTGPGADQPPTGIFIINP 57
Query: 1017 LTGTIRVAKPLDFEKRQVHSLVVRAKDNGSPPLYSEATLIVEVSDVNENMNAPVF 1071
++G + V KPLD E L A D + + +++ V D+N+ N P F
Sbjct: 58 ISGQLSVTKPLDRELIARFHLRAHAVDINGNQVENPIDIVINVIDMND--NRPEF 110
Score = 97.7 bits (244), Expect = 3e-24
Identities = 25/110 (22%), Positives = 44/110 (40%), Gaps = 11/110 (10%)
Query: 860 LASFRVTENALNGTVIFKVNATDLDLGDNAKVVYSLMTDTQD------FAVDSATGSLYV 913
+ + EN+ G ++ N + YS+ D F ++ +G L V
Sbjct: 6 IPPINLPENS-RGPFPQELVRIRSGRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSV 64
Query: 914 SASLDRERQDLYELKIRASDCDGRNDMYTLHADALVRVTIDDINDNAPNF 963
+ LDRE + L+ A D +G + + + + D+NDN P F
Sbjct: 65 TKPLDRELIARFHLRAHAVDINGN----QVENPIDIVINVIDMNDNRPEF 110
Score = 97.3 bits (243), Expect = 3e-24
Identities = 26/105 (24%), Positives = 47/105 (44%), Gaps = 8/105 (7%)
Query: 493 VSINENEPAGTSVIKVTAKDKDSGENAYISYSIA-----NLKPVPFEIDHFSGVIKTTQV 547
+++ EN G ++ +N + YS+ F I+ SG + T+
Sbjct: 9 INLPENSR-GPFPQELVRIRSGRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKP 67
Query: 548 LDYESMRREYILRVRASDWGLPYRRQTEMQLKIKLLDVNDNRPQF 592
LD E + + LR A D + + + + I ++D+NDNRP+F
Sbjct: 68 LDRE-LIARFHLRAHAVDINGN-QVENPIDIVINVIDMNDNRPEF 110
Score = 97.0 bits (242), Expect = 4e-24
Identities = 29/112 (25%), Positives = 48/112 (42%), Gaps = 7/112 (6%)
Query: 749 PEFFSFPIELQVNESVPLKSTLTKIIARDRDLGYNGKLVFGISSGDNDS----VFRIDPD 804
++ PI L N P +++ N L + ++ D +F I+P
Sbjct: 2 SDWVIPPINLPENSRGPF---PQELVRIRSGRDKNLSLRYSVTGPGADQPPTGIFIINPI 58
Query: 805 SGELKVVGYLDRERTSEYTLNITVYDLGKPQKSTSKMLPITILDVNDNPPKF 856
SG+L V LDRE + + L D+ Q + I ++D+NDN P+F
Sbjct: 59 SGQLSVTKPLDRELIARFHLRAHAVDINGNQVENPIDIVINVIDMNDNRPEF 110
Score = 87.7 bits (218), Expect = 9e-21
Identities = 28/105 (26%), Positives = 45/105 (42%), Gaps = 7/105 (6%)
Query: 386 VDVPETTPVNTPIIRLKVSDADDGKNAQVFLEIVGGNEG----GEFNINPETGMLYTAVT 441
+++PE + L + KN + + G G F INP +G L
Sbjct: 9 INLPENSR-GPFPQELVRIRSGRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKP 67
Query: 442 LDAEDKAFYTLTVSAIDQGNAGTRKQSAAKVKVNIVDTNDNDPLF 486
LD E A + L A+D G + ++ + +N++D NDN P F
Sbjct: 68 LDRELIARFHLRAHAVDIN--GNQVENPIDIVINVIDMNDNRPEF 110
Score = 66.9 bits (164), Expect = 2e-13
Identities = 23/98 (23%), Positives = 40/98 (40%), Gaps = 13/98 (13%)
Query: 285 VRVVDRDAGIHGEIA---SLDIVDGDPDGHFRIVPTKIDPGTKKKEYNIVVLKLLDREIA 341
+ + + + + D P G F I +P + + V K LDRE+
Sbjct: 23 LVRIRSGRDKNLSLRYSVTGPGADQPPTGIFII-----NPISG----QLSVTKPLDRELI 73
Query: 342 PLGYNLTLRAVDKGTPPRETYKATQVHLVDLNDNKPVF 379
++L AVD E ++++D+NDN+P F
Sbjct: 74 AR-FHLRAHAVDINGNQVENPIDIVINVIDMNDNRPEF 110
Score = 64.2 bits (157), Expect = 1e-12
Identities = 19/99 (19%), Positives = 35/99 (35%), Gaps = 11/99 (11%)
Query: 167 VPEDLPLHTSILRVSAEDADLGRNGEIYYSF------RDMNEQFSIHPTSGVVTLTRPLK 220
+PE+ + + +N + YS + F I+P SG +++T+PL
Sbjct: 11 LPENSRG-PFPQELVRIRSGRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKPLD 69
Query: 221 YTDRSVHDLVVLGQDRGSVFKGGGKPSSAKLKIKVEQIN 259
+ L D G + + I V +N
Sbjct: 70 RELIARFHLRAHAVDIN----GNQVENPIDIVINVIDMN 104
Score = 39.9 bits (94), Expect = 5e-04
Identities = 21/90 (23%), Positives = 35/90 (38%), Gaps = 17/90 (18%)
Query: 72 DIRFKISSGDRDKFFKAEERLVGDFWFLLIRTRTGN---TDVLNRERKDKYILHIKATIT 128
+R+ ++ A++ G F +I +G T L+RE ++ L A
Sbjct: 35 SLRYSVTGPG------ADQPPTGIF---IINPISGQLSVTKPLDRELIARFHLRAHAV-- 83
Query: 129 HRDGKKASYEETTCKVHVNVLDTNDLNPLF 158
D E + +NV+D ND P F
Sbjct: 84 --DINGNQVE-NPIDIVINVIDMNDNRPEF 110
Score = 33.0 bits (76), Expect = 0.12
Identities = 19/83 (22%), Positives = 27/83 (32%), Gaps = 19/83 (22%)
Query: 600 HVPRNLPIGREIITLSAIDFDAGN--IISYRIVSGNED----GCFALDITSGVLSIACDL 653
++P N G L I + Y + D G F ++ SG LS+ L
Sbjct: 10 NLPENSR-GPFPQELVRIRSGRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKPL 68
Query: 654 TDVRVNERE------INVTATDS 670
D RE + A D
Sbjct: 69 -D-----RELIARFHLRAHAVDI 85
>2yqg_A Desmoglein-2, HDGC; cadherin, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens}
Length = 123
Score = 107 bits (269), Expect = 2e-27
Identities = 25/110 (22%), Positives = 44/110 (40%), Gaps = 6/110 (5%)
Query: 966 PNYSVKVREDIPVGTVVAILSASDPDLGQGGVVRYTIV---SDNEADDVFSIDRLTGTIR 1022
+++ ED+ +A + SD +G + Y +F ++ TG +
Sbjct: 15 APVALREGEDLSKKNPIAKIH-SDLAEERGLKITYKYTGKGITEPPFGIFVFNKDTGELN 73
Query: 1023 VAKPLDFEKRQVHSLVVRAKDNGSPPLYSEATLIVEVSDVNENMNAPVFS 1072
V LD E+ L A D + L ++V D+N+ N PVF+
Sbjct: 74 VTSILDREETPFFLLTGYALDARGNNVEKPLELRIKVLDIND--NEPVFT 121
Score = 101 bits (253), Expect = 2e-25
Identities = 30/109 (27%), Positives = 46/109 (42%), Gaps = 5/109 (4%)
Query: 754 FPIELQVNESVPLKSTLTKIIARDRDLGYNGKLVFGISSGDNDS----VFRIDPDSGELK 809
P+ L+ E + K+ + KI + D K+ + + +F + D+GEL
Sbjct: 15 APVALREGEDLSKKNPIAKIHS-DLAEERGLKITYKYTGKGITEPPFGIFVFNKDTGELN 73
Query: 810 VVGYLDRERTSEYTLNITVYDLGKPQKSTSKMLPITILDVNDNPPKFEK 858
V LDRE T + L D L I +LD+NDN P F +
Sbjct: 74 VTSILDREETPFFLLTGYALDARGNNVEKPLELRIKVLDINDNEPVFTQ 122
Score = 97.0 bits (242), Expect = 6e-24
Identities = 25/111 (22%), Positives = 45/111 (40%), Gaps = 8/111 (7%)
Query: 489 PEMEVSINENEPAGTSVIKVTAKDKDSGENAYISYSI----ANLKPV-PFEIDHFSGVIK 543
+ + E+ + K+ + D I+Y P F + +G +
Sbjct: 15 APVALREGEDLSKKNPIAKIHS-DLAEERGLKITYKYTGKGITEPPFGIFVFNKDTGELN 73
Query: 544 TTQVLDYESMRREYILRVRASDWGLPYRRQTEMQLKIKLLDVNDNRPQFEK 594
T +LD E ++L A D + ++L+IK+LD+NDN P F +
Sbjct: 74 VTSILDREE-TPFFLLTGYALDARGN-NVEKPLELRIKVLDINDNEPVFTQ 122
Score = 92.4 bits (230), Expect = 3e-22
Identities = 27/107 (25%), Positives = 48/107 (44%), Gaps = 7/107 (6%)
Query: 384 YEVDVPETTPVNTPIIRLKVSDADDGKNAQVFLEIVGG----NEGGEFNINPETGMLYTA 439
+ E PI ++ SD + + ++ + G G F N +TG L
Sbjct: 17 VALREGEDLSKKNPIAKIH-SDLAEERGLKITYKYTGKGITEPPFGIFVFNKDTGELNVT 75
Query: 440 VTLDAEDKAFYTLTVSAIDQGNAGTRKQSAAKVKVNIVDTNDNDPLF 486
LD E+ F+ LT A+D G + ++++ ++D NDN+P+F
Sbjct: 76 SILDREETPFFLLTGYALDAR--GNNVEKPLELRIKVLDINDNEPVF 120
Score = 90.9 bits (226), Expect = 8e-22
Identities = 29/108 (26%), Positives = 42/108 (38%), Gaps = 11/108 (10%)
Query: 862 SFRVTENALNGTVIFKVNATDLDLGDNAKVVYSLMTDTQD------FAVDSATGSLYVSA 915
+ R E+ I K+ +DL K+ Y F + TG L V++
Sbjct: 18 ALREGEDLSKKNPIAKI-HSDLAEERGLKITYKYTGKGITEPPFGIFVFNKDTGELNVTS 76
Query: 916 SLDRERQDLYELKIRASDCDGRNDMYTLHADALVRVTIDDINDNAPNF 963
LDRE + L A D G + +R+ + DINDN P F
Sbjct: 77 ILDREETPFFLLTGYALDARGN----NVEKPLELRIKVLDINDNEPVF 120
Score = 68.1 bits (167), Expect = 8e-14
Identities = 25/103 (24%), Positives = 43/103 (41%), Gaps = 14/103 (13%)
Query: 284 IVRVV-DRDAGIHGEIA---SLDIVDGDPDGHFRIVPTKIDPGTKKKEYNIVVLKLLDRE 339
I ++ D +I + + P G F + T + V +LDRE
Sbjct: 31 IAKIHSDLAEERGLKITYKYTGKGITEPPFGIFVF-----NKDTG----ELNVTSILDRE 81
Query: 340 IAPLGYNLTLRAVDKGTPPRETYKATQVHLVDLNDNKPVFDRE 382
P + LT A+D E ++ ++D+NDN+PVF ++
Sbjct: 82 ETPF-FLLTGYALDARGNNVEKPLELRIKVLDINDNEPVFTQD 123
Score = 61.6 bits (150), Expect = 2e-11
Identities = 21/97 (21%), Positives = 33/97 (34%), Gaps = 11/97 (11%)
Query: 169 EDLPLHTSILRVSAEDADLGRNGEIYYSF------RDMNEQFSIHPTSGVVTLTRPLKYT 222
EDL I ++ + D R +I Y + F + +G + +T L
Sbjct: 23 EDLSKKNPIAKIHS-DLAEERGLKITYKYTGKGITEPPFGIFVFNKDTGELNVTSILDRE 81
Query: 223 DRSVHDLVVLGQDRGSVFKGGGKPSSAKLKIKVEQIN 259
+ L D G +L+IKV IN
Sbjct: 82 ETPFFLLTGYALDAR----GNNVEKPLELRIKVLDIN 114
Score = 39.6 bits (93), Expect = 8e-04
Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 8/61 (13%)
Query: 101 IRTRTGN---TDVLNRERKDKYILHIKATITHRDGKKASYEETTCKVHVNVLDTNDLNPL 157
TG T +L+RE ++L A D + + E ++ + VLD ND P+
Sbjct: 65 FNKDTGELNVTSILDREETPFFLLTGYAL----DARGNNVE-KPLELRIKVLDINDNEPV 119
Query: 158 F 158
F
Sbjct: 120 F 120
Score = 28.1 bits (63), Expect = 7.9
Identities = 15/78 (19%), Positives = 30/78 (38%), Gaps = 17/78 (21%)
Query: 604 NLPIGREIITLSA-IDFDAGNIISYRI----VSGNEDGCFALDITSGVLSIACDLTDVRV 658
+L I + + + + G I+Y+ ++ G F + +G L++ L D
Sbjct: 24 DLSKKNPIAKIHSDLAEERGLKITYKYTGKGITEPPFGIFVFNKDTGELNVTSIL-D--- 79
Query: 659 NERE------INVTATDS 670
RE + A D+
Sbjct: 80 --REETPFFLLTGYALDA 95
>3k6f_A T-cadherin; cell adhesion, calcium, cell membrane, cleavage on PAIR
of basic residues, glycoprotein, GPI-anchor, lipoprotein,
membrane; 1.81A {Mus musculus}
Length = 100
Score = 98.2 bits (245), Expect = 1e-24
Identities = 23/97 (23%), Positives = 34/97 (35%), Gaps = 1/97 (1%)
Query: 965 LPNYSVKVREDIPVGTVVAILSASDPDLGQGGVVRYTIVSDNEADDVFSIDRLTGTIRVA 1024
+ + + P V + SD G + V D + F I+ TG++ V
Sbjct: 5 VSPILIPENQRQPFPRDVGKVVDSDRPEGSKFRLTGKGV-DQDPKGTFRINENTGSVSVT 63
Query: 1025 KPLDFEKRQVHSLVVRAKDNGSPPLYSEATLIVEVSD 1061
+ LD E + L V D L L V V D
Sbjct: 64 RTLDRETIATYQLYVETTDASGKTLEGPVPLEVIVID 100
Score = 92.0 bits (229), Expect = 2e-22
Identities = 24/94 (25%), Positives = 39/94 (41%)
Query: 755 PIELQVNESVPLKSTLTKIIARDRDLGYNGKLVFGISSGDNDSVFRIDPDSGELKVVGYL 814
PI + N+ P + K++ DR G +L D FRI+ ++G + V L
Sbjct: 7 PILIPENQRQPFPRDVGKVVDSDRPEGSKFRLTGKGVDQDPKGTFRINENTGSVSVTRTL 66
Query: 815 DRERTSEYTLNITVYDLGKPQKSTSKMLPITILD 848
DRE + Y L + D L + ++D
Sbjct: 67 DRETIATYQLYVETTDASGKTLEGPVPLEVIVID 100
Score = 81.6 bits (202), Expect = 7e-19
Identities = 21/97 (21%), Positives = 40/97 (41%), Gaps = 3/97 (3%)
Query: 489 PEMEVSINENEPAGTSVIKVTAKDKDSGENAYISYSIANLKPV-PFEIDHFSGVIKTTQV 547
+ + N+ +P V KV D+ G ++ + P F I+ +G + T+
Sbjct: 6 SPILIPENQRQPFPRDVGKVVDSDRPEGSKFRLTGKGVDQDPKGTFRINENTGSVSVTRT 65
Query: 548 LDYESMRREYILRVRASDWGLPYRRQTEMQLKIKLLD 584
LD E Y L V +D + + L++ ++D
Sbjct: 66 LDRE-TIATYQLYVETTDASGK-TLEGPVPLEVIVID 100
Score = 79.3 bits (196), Expect = 5e-18
Identities = 23/95 (24%), Positives = 39/95 (41%), Gaps = 2/95 (2%)
Query: 384 YEVDVPETTPVNTPIIRLKVSDADDGKNAQVFLEIVGGNEGGEFNINPETGMLYTAVTLD 443
+ + P + ++ SD +G ++ + V + G F IN TG + TLD
Sbjct: 8 ILIPENQRQPFPRDVGKVVDSDRPEGSKFRLTGKGVDQDPKGTFRINENTGSVSVTRTLD 67
Query: 444 AEDKAFYTLTVSAIDQGNAGTRKQSAAKVKVNIVD 478
E A Y L V D G + ++V ++D
Sbjct: 68 RETIATYQLYVETTDAS--GKTLEGPVPLEVIVID 100
Score = 71.6 bits (176), Expect = 3e-15
Identities = 22/97 (22%), Positives = 39/97 (40%), Gaps = 8/97 (8%)
Query: 863 FRVTENALN--GTVIFKVNATDLDLGDNAKVVYSLMT--DTQDFAVDSATGSLYVSASLD 918
+ EN + KV +D G ++ + F ++ TGS+ V+ +LD
Sbjct: 8 ILIPENQRQPFPRDVGKVVDSDRPEGSKFRLTGKGVDQDPKGTFRINENTGSVSVTRTLD 67
Query: 919 RERQDLYELKIRASDCDGRNDMYTLHADALVRVTIDD 955
RE Y+L + +D G+ L + V + D
Sbjct: 68 RETIATYQLYVETTDASGKT----LEGPVPLEVIVID 100
Score = 63.2 bits (154), Expect = 2e-12
Identities = 20/95 (21%), Positives = 34/95 (35%), Gaps = 8/95 (8%)
Query: 166 TVPE--DLPLHTSILRVSAEDADLGRNGEIYYSFRDMNEQ--FSIHPTSGVVTLTRPLKY 221
+PE P + +V D G + D + + F I+ +G V++TR L
Sbjct: 9 LIPENQRQPFPRDVGKVVDSDRPEGSKFRLTGKGVDQDPKGTFRINENTGSVSVTRTLDR 68
Query: 222 TDRSVHDLVVLGQDRGSVFKGGGKPSSAKLKIKVE 256
+ + L V D G L++ V
Sbjct: 69 ETIATYQLYVETTDAS----GKTLEGPVPLEVIVI 99
Score = 54.7 bits (132), Expect = 2e-09
Identities = 25/90 (27%), Positives = 37/90 (41%), Gaps = 13/90 (14%)
Query: 284 IVRVV--DRDAGIHGEIASLDIVDGDPDGHFRIVPTKIDPGTKKKEYNIVVLKLLDREIA 341
+ +VV DR G + + VD DP G FRI + T ++ V + LDRE
Sbjct: 22 VGKVVDSDRPEGSKFRL-TGKGVDQDPKGTFRI-----NENTG----SVSVTRTLDRETI 71
Query: 342 PLGYNLTLRAVDKGTPPRETYKATQVHLVD 371
Y L + D E +V ++D
Sbjct: 72 AT-YQLYVETTDASGKTLEGPVPLEVIVID 100
Score = 43.9 bits (104), Expect = 1e-05
Identities = 13/69 (18%), Positives = 30/69 (43%), Gaps = 2/69 (2%)
Query: 604 NLPIGREIITLSAIDFDAGN--IISYRIVSGNEDGCFALDITSGVLSIACDLTDVRVNER 661
P R++ + D G+ ++ + V + G F ++ +G +S+ L +
Sbjct: 15 RQPFPRDVGKVVDSDRPEGSKFRLTGKGVDQDPKGTFRINENTGSVSVTRTLDRETIATY 74
Query: 662 EINVTATDS 670
++ V TD+
Sbjct: 75 QLYVETTDA 83
Score = 31.2 bits (71), Expect = 0.39
Identities = 15/53 (28%), Positives = 23/53 (43%), Gaps = 8/53 (15%)
Query: 101 IRTRTGN---TDVLNRERKDKYILHIKATITHRDGKKASYEETTCKVHVNVLD 150
I TG+ T L+RE Y L+++ T D + E + V V+D
Sbjct: 53 INENTGSVSVTRTLDRETIATYQLYVETT----DASGKTL-EGPVPLEVIVID 100
>3k6d_A T-cadherin; cell adhesion; 1.80A {Xenopus laevis} PDB: 2v37_A
Length = 99
Score = 92.8 bits (231), Expect = 1e-22
Identities = 25/96 (26%), Positives = 37/96 (38%), Gaps = 3/96 (3%)
Query: 968 YSVKVRE--DIPVGTVVAILSASDPDLGQGGVVRYTIVSDNEADDVFSIDRLTGTIRVAK 1025
S+ + E IP +V + SD G + V D E +F I+ +G + V K
Sbjct: 5 PSISIPENQRIPFPKIVGRVVVSDRIPGSKIKLYGKGV-DQEPKGIFKINENSGEVSVTK 63
Query: 1026 PLDFEKRQVHSLVVRAKDNGSPPLYSEATLIVEVSD 1061
LD E + L V D + L + V D
Sbjct: 64 ALDREAIPSYQLQVETTDENGKTIEGPVDLEILVID 99
Score = 86.3 bits (214), Expect = 2e-20
Identities = 24/94 (25%), Positives = 40/94 (42%)
Query: 755 PIELQVNESVPLKSTLTKIIARDRDLGYNGKLVFGISSGDNDSVFRIDPDSGELKVVGYL 814
I + N+ +P + +++ DR G KL + +F+I+ +SGE+ V L
Sbjct: 6 SISIPENQRIPFPKIVGRVVVSDRIPGSKIKLYGKGVDQEPKGIFKINENSGEVSVTKAL 65
Query: 815 DRERTSEYTLNITVYDLGKPQKSTSKMLPITILD 848
DRE Y L + D L I ++D
Sbjct: 66 DREAIPSYQLQVETTDENGKTIEGPVDLEILVID 99
Score = 80.1 bits (198), Expect = 3e-18
Identities = 23/97 (23%), Positives = 42/97 (43%), Gaps = 3/97 (3%)
Query: 489 PEMEVSINENEPAGTSVIKVTAKDKDSGENAYISYSIANLKPV-PFEIDHFSGVIKTTQV 547
P + + N+ P V +V D+ G + + +P F+I+ SG + T+
Sbjct: 5 PSISIPENQRIPFPKIVGRVVVSDRIPGSKIKLYGKGVDQEPKGIFKINENSGEVSVTKA 64
Query: 548 LDYESMRREYILRVRASDWGLPYRRQTEMQLKIKLLD 584
LD E Y L+V +D + + L+I ++D
Sbjct: 65 LDRE-AIPSYQLQVETTDENGK-TIEGPVDLEILVID 99
Score = 79.3 bits (196), Expect = 5e-18
Identities = 23/98 (23%), Positives = 40/98 (40%), Gaps = 4/98 (4%)
Query: 383 IYEVDVPE--TTPVNTPIIRLKVSDADDGKNAQVFLEIVGGNEGGEFNINPETGMLYTAV 440
+ +PE P + R+ VSD G +++ + V G F IN +G +
Sbjct: 4 APSISIPENQRIPFPKIVGRVVVSDRIPGSKIKLYGKGVDQEPKGIFKINENSGEVSVTK 63
Query: 441 TLDAEDKAFYTLTVSAIDQGNAGTRKQSAAKVKVNIVD 478
LD E Y L V D+ G + +++ ++D
Sbjct: 64 ALDREAIPSYQLQVETTDEN--GKTIEGPVDLEILVID 99
Score = 74.3 bits (183), Expect = 3e-16
Identities = 20/98 (20%), Positives = 42/98 (42%), Gaps = 8/98 (8%)
Query: 862 SFRVTENALN--GTVIFKVNATDLDLGDNAKVVYSLMTD--TQDFAVDSATGSLYVSASL 917
S + EN ++ +V +D G K+ + F ++ +G + V+ +L
Sbjct: 6 SISIPENQRIPFPKIVGRVVVSDRIPGSKIKLYGKGVDQEPKGIFKINENSGEVSVTKAL 65
Query: 918 DRERQDLYELKIRASDCDGRNDMYTLHADALVRVTIDD 955
DRE Y+L++ +D +G T+ + + + D
Sbjct: 66 DREAIPSYQLQVETTDENG----KTIEGPVDLEILVID 99
Score = 60.8 bits (148), Expect = 1e-11
Identities = 23/95 (24%), Positives = 35/95 (36%), Gaps = 8/95 (8%)
Query: 166 TVPE--DLPLHTSILRVSAEDADLGRNGEIYYSFRDMN--EQFSIHPTSGVVTLTRPLKY 221
++PE +P + RV D G ++Y D F I+ SG V++T+ L
Sbjct: 8 SIPENQRIPFPKIVGRVVVSDRIPGSKIKLYGKGVDQEPKGIFKINENSGEVSVTKALDR 67
Query: 222 TDRSVHDLVVLGQDRGSVFKGGGKPSSAKLKIKVE 256
+ L V D G L+I V
Sbjct: 68 EAIPSYQLQVETTDEN----GKTIEGPVDLEILVI 98
Score = 55.4 bits (134), Expect = 1e-09
Identities = 28/109 (25%), Positives = 42/109 (38%), Gaps = 19/109 (17%)
Query: 263 PEIYVQSLPDIVEQSYADIYAIVRVVDRDAGIHGEIASLDIVDGDPDGHFRIVPTKIDPG 322
PE P IV + V V DR G ++ VD +P G F+I +
Sbjct: 10 PENQRIPFPKIVGR--------VVVSDRIPGSKIKL-YGKGVDQEPKGIFKI-----NEN 55
Query: 323 TKKKEYNIVVLKLLDREIAPLGYNLTLRAVDKGTPPRETYKATQVHLVD 371
+ + V K LDRE P Y L + D+ E ++ ++D
Sbjct: 56 SG----EVSVTKALDREAIPS-YQLQVETTDENGKTIEGPVDLEILVID 99
Score = 42.7 bits (101), Expect = 3e-05
Identities = 18/81 (22%), Positives = 30/81 (37%), Gaps = 16/81 (19%)
Query: 600 HVPRNL--PIGREIITLSAIDFDAGN--IISYRIVSGNEDGCFALDITSGVLSIACDLTD 655
+P N P + + + D G+ + + V G F ++ SG +S+ L D
Sbjct: 8 SIPENQRIPFPKIVGRVVVSDRIPGSKIKLYGKGVDQEPKGIFKINENSGEVSVTKAL-D 66
Query: 656 VRVNERE------INVTATDS 670
RE + V TD
Sbjct: 67 -----REAIPSYQLQVETTDE 82
Score = 30.4 bits (69), Expect = 0.71
Identities = 13/53 (24%), Positives = 21/53 (39%), Gaps = 8/53 (15%)
Query: 101 IRTRTGN---TDVLNRERKDKYILHIKATITHRDGKKASYEETTCKVHVNVLD 150
I +G T L+RE Y L ++ T D + E + + V+D
Sbjct: 52 INENSGEVSVTKALDREAIPSYQLQVETT----DENGKTI-EGPVDLEILVID 99
>2omz_B Epithelial-cadherin; leucine-rich-repeat, nvasion protein, IG-like
domain, adhesi protein, cell invasion-cell adhesion
complex; 1.60A {Homo sapiens} SCOP: b.1.6.1 PDB: 2omt_B
2omu_B 2omv_B 1o6s_B 2omy_B 2omx_B 3ff8_A 3ff7_A 2omw_B
Length = 105
Score = 90.1 bits (224), Expect = 9e-22
Identities = 24/105 (22%), Positives = 43/105 (40%), Gaps = 4/105 (3%)
Query: 960 APNFALPNYSVKVREDIPVGTVVAILSASDPDLGQGGVVRYTIVS---DNEADDVFSIDR 1016
P + + E+ G L + + G V Y+I D VF I+R
Sbjct: 1 GPLGSWVIPPISCPENEK-GPFPKNLVQIKSNKDKEGKVFYSITGQGADTPPVGVFIIER 59
Query: 1017 LTGTIRVAKPLDFEKRQVHSLVVRAKDNGSPPLYSEATLIVEVSD 1061
TG ++V +PLD E+ ++L A + + +++ V+D
Sbjct: 60 ETGWLKVTEPLDRERIATYTLFSHAVSSNGNAVEDPMEILITVTD 104
Score = 79.3 bits (196), Expect = 5e-18
Identities = 29/105 (27%), Positives = 43/105 (40%), Gaps = 7/105 (6%)
Query: 748 VPEFFSFPIELQVNESVPLKSTLTKIIARDRDLGYNGKLVFGISSGDNDS----VFRIDP 803
+ + PI NE P L +I + GK+ + I+ D+ VF I+
Sbjct: 3 LGSWVIPPISCPENEKGPFPKNLVQI---KSNKDKEGKVFYSITGQGADTPPVGVFIIER 59
Query: 804 DSGELKVVGYLDRERTSEYTLNITVYDLGKPQKSTSKMLPITILD 848
++G LKV LDRER + YTL + IT+ D
Sbjct: 60 ETGWLKVTEPLDRERIATYTLFSHAVSSNGNAVEDPMEILITVTD 104
Score = 78.2 bits (193), Expect = 2e-17
Identities = 25/108 (23%), Positives = 37/108 (34%), Gaps = 11/108 (10%)
Query: 854 PKFEKSLASFRVTENALNGTVIFKVNATDLDLGDNAKVVYSLMTDTQD------FAVDSA 907
P + EN G + + KV YS+ D F ++
Sbjct: 2 PLGSWVIPPISCPENE-KGPFPKNLVQIKSNKDKEGKVFYSITGQGADTPPVGVFIIERE 60
Query: 908 TGSLYVSASLDRERQDLYELKIRASDCDGRNDMYTLHADALVRVTIDD 955
TG L V+ LDRER Y L A +G + + +T+ D
Sbjct: 61 TGWLKVTEPLDRERIATYTLFSHAVSSNGN----AVEDPMEILITVTD 104
Score = 77.4 bits (191), Expect = 2e-17
Identities = 26/106 (24%), Positives = 40/106 (37%), Gaps = 7/106 (6%)
Query: 377 PVFDREIYEVDVPETTPVNTPIIRLKVSDADDGKNAQVFLEIVGGNEGGE----FNINPE 432
P+ I + PE P +++ ++ K +VF I G F I E
Sbjct: 2 PLGSWVIPPISCPENEKGPFPKNLVQI-KSNKDKEGKVFYSITGQGADTPPVGVFIIERE 60
Query: 433 TGMLYTAVTLDAEDKAFYTLTVSAIDQGNAGTRKQSAAKVKVNIVD 478
TG L LD E A YTL A+ G + ++ + + D
Sbjct: 61 TGWLKVTEPLDRERIATYTLFSHAVSSN--GNAVEDPMEILITVTD 104
Score = 72.4 bits (178), Expect = 2e-15
Identities = 24/106 (22%), Positives = 37/106 (34%), Gaps = 8/106 (7%)
Query: 484 PLFDSPEMEVSINENEPAGTSVIKVTAKDKDSGENAYISYSIA-----NLKPVPFEIDHF 538
PL +S ENE G + + + + YSI F I+
Sbjct: 2 PLGSWVIPPISCPENEK-GPFPKNLVQIKSNKDKEGKVFYSITGQGADTPPVGVFIIERE 60
Query: 539 SGVIKTTQVLDYESMRREYILRVRASDWGLPYRRQTEMQLKIKLLD 584
+G +K T+ LD E Y L A + M++ I + D
Sbjct: 61 TGWLKVTEPLDRER-IATYTLFSHAVSSNGN-AVEDPMEILITVTD 104
Score = 56.2 bits (136), Expect = 8e-10
Identities = 17/107 (15%), Positives = 33/107 (30%), Gaps = 11/107 (10%)
Query: 156 PLFYPTEYEETVPEDLPLHTSILRVSAEDADLGRNGEIYYSF------RDMNEQFSIHPT 209
PL + PE+ + ++ + G+++YS F I
Sbjct: 2 PLGSWVIPPISCPENEKG-PFPKNLVQIKSNKDKEGKVFYSITGQGADTPPVGVFIIERE 60
Query: 210 SGVVTLTRPLKYTDRSVHDLVVLGQDRGSVFKGGGKPSSAKLKIKVE 256
+G + +T PL + + L G ++ I V
Sbjct: 61 TGWLKVTEPLDRERIATYTLFSHAVSSN----GNAVEDPMEILITVT 103
Score = 46.2 bits (110), Expect = 3e-06
Identities = 18/90 (20%), Positives = 29/90 (32%), Gaps = 13/90 (14%)
Query: 285 VRVVDRDAGIHGEIA---SLDIVDGDPDGHFRIVPTKIDPGTKKKEYNIVVLKLLDREIA 341
+ + + G++ + D P G F I + T + V + LDRE
Sbjct: 25 LVQIKSNKDKEGKVFYSITGQGADTPPVGVFII-----ERETG----WLKVTEPLDRERI 75
Query: 342 PLGYNLTLRAVDKGTPPRETYKATQVHLVD 371
Y L AV E + + D
Sbjct: 76 AT-YTLFSHAVSSNGNAVEDPMEILITVTD 104
Score = 37.0 bits (86), Expect = 0.004
Identities = 24/122 (19%), Positives = 38/122 (31%), Gaps = 27/122 (22%)
Query: 36 RFTQKDYNVSISENSNSKTYVTPEEKMGIYRGTSEVD----IRFKISSGDRDKFFKAEER 91
+ +S EN + + + S D + + I+ D
Sbjct: 3 LGSWVIPPISCPENEKG-PFPKN-----LVQIKSNKDKEGKVFYSITGQGAD------TP 50
Query: 92 LVGDFWFLLIRTRTGN---TDVLNRERKDKYILHIKATITHRDGKKASYEETTCKVHVNV 148
VG F I TG T+ L+RER Y L A + E ++ + V
Sbjct: 51 PVGVFI---IERETGWLKVTEPLDRERIATYTLFSHAV----SSNGNAV-EDPMEILITV 102
Query: 149 LD 150
D
Sbjct: 103 TD 104
>3k6i_A T-cadherin; cell adhesion, alternative splicing, calcium, cell
membrane, cleavage on PAIR of basic residues,
glycoprotein, GPI-anchor, lipoprotein; 1.13A {Gallus
gallus}
Length = 99
Score = 86.3 bits (214), Expect = 2e-20
Identities = 27/97 (27%), Positives = 44/97 (45%)
Query: 752 FSFPIELQVNESVPLKSTLTKIIARDRDLGYNGKLVFGISSGDNDSVFRIDPDSGELKVV 811
+ PI + N+ P ++ K+I + G +L D +FRI+ SG++ V
Sbjct: 3 LATPILIPENQRPPFPRSVGKVIRSEGTEGAKFRLSGKGVDQDPKGIFRINEISGDVSVT 62
Query: 812 GYLDRERTSEYTLNITVYDLGKPQKSTSKMLPITILD 848
LDRE + Y L + V DL L I+++D
Sbjct: 63 RPLDREAIANYELEVEVTDLSGKIIDGPVRLDISVID 99
Score = 85.6 bits (212), Expect = 3e-20
Identities = 21/96 (21%), Positives = 36/96 (37%), Gaps = 3/96 (3%)
Query: 968 YSVKVRE--DIPVGTVVAILSASDPDLGQGGVVRYTIVSDNEADDVFSIDRLTGTIRVAK 1025
+ + E P V + S+ G + V D + +F I+ ++G + V +
Sbjct: 5 TPILIPENQRPPFPRSVGKVIRSEGTEGAKFRLSGKGV-DQDPKGIFRINEISGDVSVTR 63
Query: 1026 PLDFEKRQVHSLVVRAKDNGSPPLYSEATLIVEVSD 1061
PLD E + L V D + L + V D
Sbjct: 64 PLDREAIANYELEVEVTDLSGKIIDGPVRLDISVID 99
Score = 77.1 bits (190), Expect = 3e-17
Identities = 21/98 (21%), Positives = 40/98 (40%), Gaps = 4/98 (4%)
Query: 383 IYEVDVPE--TTPVNTPIIRLKVSDADDGKNAQVFLEIVGGNEGGEFNINPETGMLYTAV 440
+ +PE P + ++ S+ +G ++ + V + G F IN +G +
Sbjct: 4 ATPILIPENQRPPFPRSVGKVIRSEGTEGAKFRLSGKGVDQDPKGIFRINEISGDVSVTR 63
Query: 441 TLDAEDKAFYTLTVSAIDQGNAGTRKQSAAKVKVNIVD 478
LD E A Y L V D G ++ ++++D
Sbjct: 64 PLDREAIANYELEVEVTDLS--GKIIDGPVRLDISVID 99
Score = 74.4 bits (183), Expect = 3e-16
Identities = 26/95 (27%), Positives = 39/95 (41%), Gaps = 5/95 (5%)
Query: 493 VSINENE--PAGTSVIKVTAKDKDSGENAYISYSIANLKPV-PFEIDHFSGVIKTTQVLD 549
+ I EN+ P SV KV + G +S + P F I+ SG + T+ LD
Sbjct: 7 ILIPENQRPPFPRSVGKVIRSEGTEGAKFRLSGKGVDQDPKGIFRINEISGDVSVTRPLD 66
Query: 550 YESMRREYILRVRASDWGLPYRRQTEMQLKIKLLD 584
E Y L V +D ++L I ++D
Sbjct: 67 RE-AIANYELEVEVTDLSGK-IIDGPVRLDISVID 99
Score = 69.4 bits (170), Expect = 2e-14
Identities = 18/98 (18%), Positives = 39/98 (39%), Gaps = 8/98 (8%)
Query: 862 SFRVTENALN--GTVIFKVNATDLDLGDNAKVVYSLMTDTQD--FAVDSATGSLYVSASL 917
+ EN + KV ++ G ++ + F ++ +G + V+ L
Sbjct: 6 PILIPENQRPPFPRSVGKVIRSEGTEGAKFRLSGKGVDQDPKGIFRINEISGDVSVTRPL 65
Query: 918 DRERQDLYELKIRASDCDGRNDMYTLHADALVRVTIDD 955
DRE YEL++ +D G+ + + +++ D
Sbjct: 66 DREAIANYELEVEVTDLSGKI----IDGPVRLDISVID 99
Score = 58.6 bits (142), Expect = 1e-10
Identities = 23/95 (24%), Positives = 37/95 (38%), Gaps = 8/95 (8%)
Query: 166 TVPE--DLPLHTSILRVSAEDADLGRNGEIYYSFRDMNEQ--FSIHPTSGVVTLTRPLKY 221
+PE P S+ +V + G + D + + F I+ SG V++TRPL
Sbjct: 8 LIPENQRPPFPRSVGKVIRSEGTEGAKFRLSGKGVDQDPKGIFRINEISGDVSVTRPLDR 67
Query: 222 TDRSVHDLVVLGQDRGSVFKGGGKPSSAKLKIKVE 256
+ ++L V D G +L I V
Sbjct: 68 EAIANYELEVEVTDLS----GKIIDGPVRLDISVI 98
Score = 53.6 bits (129), Expect = 6e-09
Identities = 23/109 (21%), Positives = 36/109 (33%), Gaps = 19/109 (17%)
Query: 263 PEIYVQSLPDIVEQSYADIYAIVRVVDRDAGIHGEIASLDIVDGDPDGHFRIVPTKIDPG 322
PE P V + + G + S VD DP G FRI +
Sbjct: 10 PENQRPPFPRSVGKVIRS--------EGTEGAKFRL-SGKGVDQDPKGIFRI-----NEI 55
Query: 323 TKKKEYNIVVLKLLDREIAPLGYNLTLRAVDKGTPPRETYKATQVHLVD 371
+ ++ V + LDRE Y L + D + + ++D
Sbjct: 56 SG----DVSVTRPLDREAIAN-YELEVEVTDLSGKIIDGPVRLDISVID 99
Score = 41.3 bits (97), Expect = 1e-04
Identities = 17/75 (22%), Positives = 30/75 (40%), Gaps = 4/75 (5%)
Query: 600 HVPRNL--PIGREIITLSAIDFDAGN--IISYRIVSGNEDGCFALDITSGVLSIACDLTD 655
+P N P R + + + G +S + V + G F ++ SG +S+ L
Sbjct: 8 LIPENQRPPFPRSVGKVIRSEGTEGAKFRLSGKGVDQDPKGIFRINEISGDVSVTRPLDR 67
Query: 656 VRVNEREINVTATDS 670
+ E+ V TD
Sbjct: 68 EAIANYELEVEVTDL 82
Score = 28.5 bits (64), Expect = 3.2
Identities = 12/53 (22%), Positives = 23/53 (43%), Gaps = 8/53 (15%)
Query: 101 IRTRTGN---TDVLNRERKDKYILHIKATITHRDGKKASYEETTCKVHVNVLD 150
I +G+ T L+RE Y L ++ T D + ++ ++V+D
Sbjct: 52 INEISGDVSVTRPLDREAIANYELEVEVT----DLSGKII-DGPVRLDISVID 99
>1zvn_A Mn-cadherin; strand dimer, ----; 2.16A {Gallus gallus}
Length = 99
Score = 85.9 bits (213), Expect = 2e-20
Identities = 26/89 (29%), Positives = 43/89 (48%), Gaps = 3/89 (3%)
Query: 974 EDIPVGTVVAILSASDPDLGQGGVVRYTIVSDNEADDVFSIDRLTGTIRVAKPLDFEKRQ 1033
E + SD D G G ++Y + + A VF+ID TG I + LD E+R
Sbjct: 13 EYTGTDPLYVGKLHSDMDRGDG-SIKYILSGEG-AGIVFTIDDTTGDIHAIQRLDREERS 70
Query: 1034 VHSLVVRAKDNGS-PPLYSEATLIVEVSD 1061
++L +A D + P+ E+ I+++ D
Sbjct: 71 QYTLRAQALDRRTGRPMEPESEFIIKIQD 99
Score = 79.4 bits (196), Expect = 6e-18
Identities = 23/89 (25%), Positives = 40/89 (44%), Gaps = 2/89 (2%)
Query: 390 ETTPVNTPIIRLKVSDADDGKNAQVFLEIVGGNEGGEFNINPETGMLYTAVTLDAEDKAF 449
E T + + SD D G + + + G G F I+ TG ++ LD E+++
Sbjct: 13 EYTGTDPLYVGKLHSDMDRG-DGSIKYILSGEGAGIVFTIDDTTGDIHAIQRLDREERSQ 71
Query: 450 YTLTVSAIDQGNAGTRKQSAAKVKVNIVD 478
YTL A+D+ G + ++ + I D
Sbjct: 72 YTLRAQALDRRT-GRPMEPESEFIIKIQD 99
Score = 72.0 bits (177), Expect = 2e-15
Identities = 25/104 (24%), Positives = 35/104 (33%), Gaps = 13/104 (12%)
Query: 746 VHVPEFFSFPIELQVNESVPLKSTLTKIIARDRDLGYNGKLVFGISSGDNDSVFRIDPDS 805
V E E + D D G +G + + +S VF ID +
Sbjct: 8 FFVLE-----------EYTGTDPLYVGKLHSDMDRG-DGSIKYILSGEGAGIVFTIDDTT 55
Query: 806 GELKVVGYLDRERTSEYTLNITVYDLG-KPQKSTSKMLPITILD 848
G++ + LDRE S+YTL D I I D
Sbjct: 56 GDIHAIQRLDREERSQYTLRAQALDRRTGRPMEPESEFIIKIQD 99
Score = 69.7 bits (171), Expect = 1e-14
Identities = 23/97 (23%), Positives = 39/97 (40%), Gaps = 7/97 (7%)
Query: 862 SFRVTEN-ALNGTVIFKVNATDLDLGDNAKVVYSLMTDTQD--FAVDSATGSLYVSASLD 918
F V E + +D+D G + + Y L + F +D TG ++ LD
Sbjct: 7 QFFVLEEYTGTDPLYVGKLHSDMDRG-DGSIKYILSGEGAGIVFTIDDTTGDIHAIQRLD 65
Query: 919 RERQDLYELKIRASDCDGRNDMYTLHADALVRVTIDD 955
RE + Y L+ +A D R + ++ + I D
Sbjct: 66 REERSQYTLRAQALD---RRTGRPMEPESEFIIKIQD 99
Score = 68.2 bits (167), Expect = 4e-14
Identities = 26/97 (26%), Positives = 39/97 (40%), Gaps = 4/97 (4%)
Query: 489 PEMEVSINENEPAGTSVIKVTAKDKDSGENAYISYSIANL-KPVPFEIDHFSGVIKTTQV 547
+ V + E + D D G + I Y ++ + F ID +G I Q
Sbjct: 6 NQFFV-LEEYTGTDPLYVGKLHSDMDRG-DGSIKYILSGEGAGIVFTIDDTTGDIHAIQR 63
Query: 548 LDYESMRREYILRVRASDWGLPYRRQTEMQLKIKLLD 584
LD E R +Y LR +A D + E + IK+ D
Sbjct: 64 LDRE-ERSQYTLRAQALDRRTGRPMEPESEFIIKIQD 99
Score = 59.3 bits (144), Expect = 6e-11
Identities = 20/90 (22%), Positives = 33/90 (36%), Gaps = 6/90 (6%)
Query: 169 EDLPLHTSILRVSAEDADLGRNGEIYYSFRDMNEQ--FSIHPTSGVVTLTRPLKYTDRSV 226
E + D D G +G I Y F+I T+G + + L +RS
Sbjct: 13 EYTGTDPLYVGKLHSDMDRG-DGSIKYILSGEGAGIVFTIDDTTGDIHAIQRLDREERSQ 71
Query: 227 HDLVVLGQDRGSVFKGGGKPSSAKLKIKVE 256
+ L DR + G ++ IK++
Sbjct: 72 YTLRAQALDRRT---GRPMEPESEFIIKIQ 98
Score = 38.5 bits (90), Expect = 0.001
Identities = 22/84 (26%), Positives = 31/84 (36%), Gaps = 13/84 (15%)
Query: 289 DRDAGIHGEIASLDIVDGDPDGHFRIVPTKIDPGTKKKEYNIVVLKLLDREIAPLGYNLT 348
D D G G I + F I D T +I ++ LDRE Y L
Sbjct: 28 DMDRG-DGSI-KYILSGEGAGIVFTI-----DDTTG----DIHAIQRLDREERSQ-YTLR 75
Query: 349 LRAVDKGT-PPRETYKATQVHLVD 371
+A+D+ T P E + + D
Sbjct: 76 AQALDRRTGRPMEPESEFIIKIQD 99
Score = 38.1 bits (89), Expect = 0.002
Identities = 16/79 (20%), Positives = 23/79 (29%), Gaps = 14/79 (17%)
Query: 600 HVPRNL-PIGREIITLSAIDFDAGNI-ISYRIVSGNEDGCFALDITSGVLSIACDLTDVR 657
V + D D G+ I Y + F +D T+G + L D
Sbjct: 9 FVLEEYTGTDPLYVGKLHSDMDRGDGSIKYILSGEGAGIVFTIDDTTGDIHAIQRL-D-- 65
Query: 658 VNERE------INVTATDS 670
RE + A D
Sbjct: 66 ---REERSQYTLRAQALDR 81
Score = 35.8 bits (83), Expect = 0.010
Identities = 15/82 (18%), Positives = 27/82 (32%), Gaps = 20/82 (24%)
Query: 72 DIRFKISSGDRDKFFKAEERLVGDFWFLLIRTRTGN---TDVLNRERKDKYILHIKATIT 128
I++ +S F I TG+ L+RE + +Y L +A
Sbjct: 35 SIKYILSGEGAGIVFT-------------IDDTTGDIHAIQRLDREERSQYTLRAQAL-- 79
Query: 129 HRDGKKASYEETTCKVHVNVLD 150
D + E + + + D
Sbjct: 80 --DRRTGRPMEPESEFIIKIQD 99
>1zxk_A Cadherin-8; strand dimer, cell adhesion; 2.00A {Mus musculus} PDB:
2a4c_A
Length = 98
Score = 80.2 bits (198), Expect = 2e-18
Identities = 25/97 (25%), Positives = 44/97 (45%), Gaps = 4/97 (4%)
Query: 966 PNYSVKVREDIPVGTVVAILSASDPDLGQGGVVRYTIVSDNEADDVFSIDRLTGTIRVAK 1025
V + E ++ +D D G + +Y + D A +F I+ +TG I K
Sbjct: 5 NQMFV-LEEFSGPEPILVGRLHTDLDPGSKKI-KYILSGDG-AGTIFQINDITGDIHAIK 61
Query: 1026 PLDFEKRQVHSLVVRAKD-NGSPPLYSEATLIVEVSD 1061
LD E++ ++L +A D + PL + I++V D
Sbjct: 62 RLDREEKAEYTLTAQAVDFETNKPLEPPSEFIIKVQD 98
Score = 72.5 bits (178), Expect = 1e-15
Identities = 23/89 (25%), Positives = 40/89 (44%), Gaps = 2/89 (2%)
Query: 390 ETTPVNTPIIRLKVSDADDGKNAQVFLEIVGGNEGGEFNINPETGMLYTAVTLDAEDKAF 449
E + ++ +D D G + ++ + G G F IN TG ++ LD E+KA
Sbjct: 12 EFSGPEPILVGRLHTDLDPG-SKKIKYILSGDGAGTIFQINDITGDIHAIKRLDREEKAE 70
Query: 450 YTLTVSAIDQGNAGTRKQSAAKVKVNIVD 478
YTLT A+D + ++ + + D
Sbjct: 71 YTLTAQAVDFET-NKPLEPPSEFIIKVQD 98
Score = 69.8 bits (171), Expect = 1e-14
Identities = 21/95 (22%), Positives = 40/95 (42%), Gaps = 3/95 (3%)
Query: 755 PIELQVNESVPLKSTLTKIIARDRDLGYNGKLVFGISSGDNDSVFRIDPDSGELKVVGYL 814
+ + S P + ++ D D G + K+ + +S ++F+I+ +G++ + L
Sbjct: 6 QMFVLEEFSGPEPILVGRL-HTDLDPG-SKKIKYILSGDGAGTIFQINDITGDIHAIKRL 63
Query: 815 DRERTSEYTLNITVYDL-GKPQKSTSKMLPITILD 848
DRE +EYTL D I + D
Sbjct: 64 DREEKAEYTLTAQAVDFETNKPLEPPSEFIIKVQD 98
Score = 66.7 bits (163), Expect = 1e-13
Identities = 24/97 (24%), Positives = 39/97 (40%), Gaps = 7/97 (7%)
Query: 862 SFRVTEN-ALNGTVIFKVNATDLDLGDNAKVVYSLMTDTQD--FAVDSATGSLYVSASLD 918
V E + ++ TDLD G + K+ Y L D F ++ TG ++ LD
Sbjct: 6 QMFVLEEFSGPEPILVGRLHTDLDPG-SKKIKYILSGDGAGTIFQINDITGDIHAIKRLD 64
Query: 919 RERQDLYELKIRASDCDGRNDMYTLHADALVRVTIDD 955
RE + Y L +A D + L + + + D
Sbjct: 65 REEKAEYTLTAQAVDFET---NKPLEPPSEFIIKVQD 98
Score = 63.2 bits (154), Expect = 2e-12
Identities = 21/94 (22%), Positives = 38/94 (40%), Gaps = 4/94 (4%)
Query: 493 VSINENEPA-GTSVIKVTAKDKDSGENAYISYSIAN-LKPVPFEIDHFSGVIKTTQVLDY 550
+ + E ++ D D G + I Y ++ F+I+ +G I + LD
Sbjct: 7 MFVLEEFSGPEPILVGRLHTDLDPG-SKKIKYILSGDGAGTIFQINDITGDIHAIKRLDR 65
Query: 551 ESMRREYILRVRASDWGLPYRRQTEMQLKIKLLD 584
E + EY L +A D+ + + IK+ D
Sbjct: 66 E-EKAEYTLTAQAVDFETNKPLEPPSEFIIKVQD 98
Score = 52.0 bits (125), Expect = 2e-08
Identities = 17/92 (18%), Positives = 32/92 (34%), Gaps = 10/92 (10%)
Query: 169 EDLPLHTSILRVSAEDADLGRNGEIYYSFR--DMNEQFSIHPTSGVVTLTRPLKYTDRSV 226
E ++ D D G + +I Y F I+ +G + + L +++
Sbjct: 12 EFSGPEPILVGRLHTDLDPG-SKKIKYILSGDGAGTIFQINDITGDIHAIKRLDREEKAE 70
Query: 227 HDLVVLGQDRGSVFKGGGKP--SSAKLKIKVE 256
+ L D KP ++ IKV+
Sbjct: 71 YTLTAQAVDF-----ETNKPLEPPSEFIIKVQ 97
Score = 37.8 bits (88), Expect = 0.002
Identities = 22/100 (22%), Positives = 36/100 (36%), Gaps = 11/100 (11%)
Query: 273 IVEQSYADIYAIVRVVDRDAGIHGEIASLDIVDGDPDGHFRIVPTKIDPGTKKKEYNIVV 332
++E+ +V + D + + F+I + T +I
Sbjct: 9 VLEEFSGPEPILVGRLHTDLDPGSKKIKYILSGDGAGTIFQI-----NDITG----DIHA 59
Query: 333 LKLLDREIAPLGYNLTLRAVDKGT-PPRETYKATQVHLVD 371
+K LDRE Y LT +AVD T P E + + D
Sbjct: 60 IKRLDREEKAE-YTLTAQAVDFETNKPLEPPSEFIIKVQD 98
Score = 34.7 bits (80), Expect = 0.022
Identities = 9/56 (16%), Positives = 17/56 (30%), Gaps = 2/56 (3%)
Query: 600 HVPRNL-PIGREIITLSAIDFDAGNI-ISYRIVSGNEDGCFALDITSGVLSIACDL 653
V ++ D D G+ I Y + F ++ +G + L
Sbjct: 8 FVLEEFSGPEPILVGRLHTDLDPGSKKIKYILSGDGAGTIFQINDITGDIHAIKRL 63
Score = 34.3 bits (79), Expect = 0.035
Identities = 17/82 (20%), Positives = 28/82 (34%), Gaps = 20/82 (24%)
Query: 72 DIRFKISSGDRDKFFKAEERLVGDFWFLLIRTRTGN---TDVLNRERKDKYILHIKATIT 128
I++ +S F+ I TG+ L+RE K +Y L +A
Sbjct: 34 KIKYILSGDGAGTIFQ-------------INDITGDIHAIKRLDREEKAEYTLTAQAV-- 78
Query: 129 HRDGKKASYEETTCKVHVNVLD 150
D + E + + V D
Sbjct: 79 --DFETNKPLEPPSEFIIKVQD 98
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 65.5 bits (159), Expect = 1e-10
Identities = 102/634 (16%), Positives = 178/634 (28%), Gaps = 255/634 (40%)
Query: 162 EYEETVPEDLPLHTSILRVSAEDADLGRNGEIYYSFRDMNEQFSIHPTSGVVTLTRPLKY 221
E+ VP S L+ EQF+ L P
Sbjct: 17 EHVLLVPTASFFIASQLQ----------------------EQFN-------KILPEP--- 44
Query: 222 TDRSVHDLVVLGQDRGSVFKGGGKPSSAKLKIKVEQINLYGPEIYVQSLPDIVEQSYADI 281
T+ D D +P++ E L G ++ + +VE S
Sbjct: 45 TEGFAAD------D---------EPTT-----PAE---LVGK--FLGYVSSLVEPSKVGQ 79
Query: 282 Y-AIVRVV----------DRDAGIHGEIASLDIVDGDPDGHFRIVPTKIDPGTKKKEYNI 330
+ ++ + D IH A L + + T K +
Sbjct: 80 FDQVLNLCLTEFENCYLEGND--IHALAAKLL---------------QENDTTLVKTKEL 122
Query: 331 V-----VLKLLDREIAPLGYNLTLRAVDKGTPP------------------RETYKATQV 367
+ + R + RAV +G R+ Y+ V
Sbjct: 123 IKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHV 182
Query: 368 HLVDL---------------NDNKPVFDREIYEVDV------PETTP---------VNTP 397
+ DL D + VF + + ++ P TP ++ P
Sbjct: 183 LVGDLIKFSAETLSELIRTTLDAEKVFTQGL---NILEWLENPSNTPDKDYLLSIPISCP 239
Query: 398 IIRLKVSDADDGKNAQ-----VFLEIVGGNEGGEFNINPE--TGM---LYTAVTLDAED- 446
+I + Q V +++G GE + TG L TAV + D
Sbjct: 240 LIGV----------IQLAHYVVTAKLLGFTP-GELRSYLKGATGHSQGLVTAVAIAETDS 288
Query: 447 -KAFYTLTVSA------IDQGNAGTRKQSA-------AKVKVNIVDTNDNDPLFDSPEME 492
++F+ A I G R A + + ++ N+ P SP M
Sbjct: 289 WESFFVSVRKAITVLFFI-----GVRCYEAYPNTSLPPSILEDSLENNEGVP---SP-M- 338
Query: 493 VSI-NENEPAGTSVIKVTAKDKDSGENAYIS-----------------YSIANL------ 528
+SI N + + T +G+ IS Y +
Sbjct: 339 LSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKA 398
Query: 529 --------------KP----------VPFEIDHFSGVIKTTQVLDYESMRREYILRVRAS 564
K PF H ++ + +++ + ++ + A
Sbjct: 399 PSGLDQSRIPFSERKLKFSNRFLPVASPF---HSHLLVPASDLINKDLVKNN--VSFNAK 453
Query: 565 DWGLP-YRRQTEMQLKIKLLDVNDNRPQFEKVDCLGHVPRNLPIGREIITLSA---IDFD 620
D +P Y T +++L + + VDC+ +P A +DF
Sbjct: 454 DIQIPVY--DTFDGSDLRVLSGSISE---RIVDCIIRLPVKWE---TTTQFKATHILDFG 505
Query: 621 AGNI--ISYRIVSGNEDGCFALDITSGVLSIACD 652
G + + N+DG I +G L I D
Sbjct: 506 PGGASGLG-VLTHRNKDGTGVRVIVAGTLDINPD 538
Score = 58.1 bits (140), Expect = 2e-08
Identities = 130/762 (17%), Positives = 225/762 (29%), Gaps = 308/762 (40%)
Query: 216 TRPLKYTDRSV-HDLVVLGQDRGSVFKGGGKPSSAKLKIKVEQINLYGPEIYVQSLPDIV 274
TRPL + S+ H L+V P++ Q+ E + + LP+
Sbjct: 6 TRPLTLSHGSLEHVLLV--------------PTA--SFFIASQLQ----EQFNKILPEPT 45
Query: 275 EQSYADIYAIVRVVDRDAGIHGEIAS-LDIVDGDPDGHF-RIVPTKIDPGTKKKEYNIVV 332
E AD D E + ++V G F V + ++P K +++ V+
Sbjct: 46 EGFAAD----------D-----EPTTPAELV-----GKFLGYVSSLVEPS-KVGQFDQVL 84
Query: 333 LKLLDR-EIAPLGYNLTLRAVDKGTPPRETYKATQVH-----LVDLNDNKPVFDREI--- 383
L E L N D +H L+ ND V +E+
Sbjct: 85 NLCLTEFENCYLEGN------D-------------IHALAAKLLQENDTTLVKTKELIKN 125
Query: 384 -YE----VDVPETTPVNTPIIRLKVSDADDGKNAQVFLEIVGGNEGGEFNIN---PETGM 435
P N+ + R +G NAQ+ I GG +G N + E
Sbjct: 126 YITARIMAKRPFDKKSNSALFR----AVGEG-NAQLVA-IFGG-QG---NTDDYFEELRD 175
Query: 436 LYTAVTLDAEDKAFYTLTVSAIDQGNAGTRKQSAAKVKVNIV-DTNDNDPLFDSPEMEVS 494
LY Y + V + + +A+ ++ T D + +F
Sbjct: 176 LYQT----------YHVLVGDL--------IKFSAETLSELIRTTLDAEKVF-------- 209
Query: 495 INENEPAGTSVIKVTAKDKDSGENAYISYSIANLKPV--PFEIDHFSGVIKTTQVLDYES 552
G ++++ ++ + Y+ P+ P I Q+ Y
Sbjct: 210 -----TQGLNILEWLENPSNTPDKDYLLSI-----PISCPL--------IGVIQLAHYVV 251
Query: 553 MRREYILRVRASDWGLPYRRQTEMQLKIKLLDVNDNRPQFEKVDCLGHVPRNLPIGREII 612
+ G E+ R + GH + ++
Sbjct: 252 TAKLL---------GFTP---GEL------------RSYLKGA--TGH-------SQGLV 278
Query: 613 TLSAI-------DFD--AGNIISYRIVSG----------------NEDGCFALDITSGV- 646
T AI F I+ G ED +L+ GV
Sbjct: 279 TAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILED---SLENNEGVP 335
Query: 647 ---LSIACDLTDVRVNEREINVTATDSAHFSDVVRIRINLVSARR---IPEPGKTLENDS 700
LSI +LT +V + +N T ++H ++ I+LV+ + + P ++L
Sbjct: 336 SPMLSI-SNLTQEQV-QDYVNKT---NSHLPAGKQVEISLVNGAKNLVVSGPPQSLY--- 387
Query: 701 GGFECKDTGVARRLTEVLAAAEKNNLRSQSYQEEFAMMPSRYGENVHVPEF-FSF-PIEL 758
G+ L + A + + QS + F+ R +F F P+
Sbjct: 388 --------GLNLTLRKAKAPSGLD----QS-RIPFS---ER------KLKFSNRFLPV-- 423
Query: 759 QVNESVP-----LKSTLTKIIARDRDLGYNGKLVFGISSGDNDSVFRIDPDSGELKVVGY 813
+ P L I ++DL N +
Sbjct: 424 ----ASPFHSHLLVPASDLI---NKDLVKNN--------------VSFNAKD-------- 454
Query: 814 LDRERTSEYTLNITVYDL--GKPQKSTSKMLPITILD-VNDNPPKFEKSLAS-------F 863
+ I VYD G + S + I+D + P K+E + F
Sbjct: 455 ----------IQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDF 504
Query: 864 ---------RVTENALNGT---VIFKVNATDLDLGDNAKVVY 893
+T +GT VI A LD+ + +
Sbjct: 505 GPGGASGLGVLTHRNKDGTGVRVIV---AGTLDINPDDDYGF 543
Score = 52.4 bits (125), Expect = 9e-07
Identities = 107/647 (16%), Positives = 192/647 (29%), Gaps = 270/647 (41%)
Query: 532 PFEIDHFSGVIKTTQVLDYESMRREYILRVRASDWGLPYRRQTEMQLK---IKLLD---- 584
P + H G + E++L V + + QL+ K+L
Sbjct: 8 PLTLSH--GSL-------------EHVLLVPTASFF------IASQLQEQFNKILPEPTE 46
Query: 585 --VNDNRP--------QFEKVDCLGHV-----PRNLPIGREIITLSAIDFDAGNIISYRI 629
D+ P +F LG+V P + +++ L +F+
Sbjct: 47 GFAADDEPTTPAELVGKF-----LGYVSSLVEPSKVGQFDQVLNLCLTEFEN------CY 95
Query: 630 VSGNEDGCFALDITSGVLSIACDLTDVRVNEREINVTATDSAHFSDVVRIRINLVSARRI 689
+ GN DI + + + V +E+ I+ N ++AR +
Sbjct: 96 LEGN-------DIHALAAKLLQENDTTLVKTKEL---------------IK-NYITARIM 132
Query: 690 PEPGKTLENDSGGFECKDTGVARRLTEVLAAA------------EKNNLRS--QSYQ--- 732
+ +++S F G A+ L A E LR Q+Y
Sbjct: 133 AKRPFDKKSNSALFRAVGEGNAQ-----LVAIFGGQGNTDDYFEE---LRDLYQTYHVLV 184
Query: 733 -----------EEFAMMPSR----YGENVHV----------P--EFF-SFPIELQVNESV 764
E + + +++ P ++ S PI S
Sbjct: 185 GDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPI------SC 238
Query: 765 PLKSTLTK----IIARDRDLGYN---------GKLVFG--------ISSGDN-DSVFRID 802
PL + + ++ + LG+ G I+ D+ +S F
Sbjct: 239 PL-IGVIQLAHYVVTA-KLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSV 296
Query: 803 PDSGELKV---VGYLDRERTSEYTLNITVY------DLGKPQKSTSKMLPITILDVNDNP 853
+ + V +G E +L ++ + G P S ML I+ L
Sbjct: 297 RKA--ITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVP----SPMLSISNLT----- 345
Query: 854 PKFEKSLASFRVTENALNGTVIFKVNATDLDLGDNAKVVYSLMTDTQDFAVDSATG---S 910
++ + + + K N+ L +V SL+ ++ V +G S
Sbjct: 346 ---QEQVQDY-----------VNKTNSH---LPAGKQVEISLVNGAKNLVV---SGPPQS 385
Query: 911 LY----------VSASLDRERQDLYELKIRASDCDGRNDMYTL------H----ADALVR 950
LY + LD+ R E K++ S+ + L H A
Sbjct: 386 LYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNR------F-LPVASPFHSHLLVPASDL 438
Query: 951 VTIDDINDN----APNFALPNYSV-------KVREDIPVGTVVAILSASDP--------- 990
+ D + +N A + +P Y + I V I+ P
Sbjct: 439 INKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCII--RLPVKWETTTQF 496
Query: 991 ------DLGQGGVVRYTIVSDNEADDVFSIDRLTGT-IRV--AKPLD 1028
D G GG +++ D GT +RV A LD
Sbjct: 497 KATHILDFGPGGASGLGVLTHRNKD---------GTGVRVIVAGTLD 534
Score = 45.8 bits (108), Expect = 9e-05
Identities = 90/533 (16%), Positives = 158/533 (29%), Gaps = 175/533 (32%)
Query: 6 TPLNQWLTVVALLLP---TVILTSDDIGRSSSLRFTQKDYNVSISENSNSKTYVTPEEKM 62
+ + Q+ V+ L L L +DI + + + Q++ + K Y
Sbjct: 75 SKVGQFDQVLNLCLTEFENCYLEGNDI-HALAAKLLQENDTTLVKTKELIKNY------- 126
Query: 63 GIYRGTSEVDIRFKISSGDRDKFFKAEERLVGDFWFLLI----RTRTGNTDV----LNRE 114
F+A G+ + I GNTD L R+
Sbjct: 127 --ITARIMAKR--PFDKKSNSALFRAVGE--GNAQLVAIFGGQ----GNTDDYFEEL-RD 175
Query: 115 RKDKYILHIKATITHRDGKK----ASYEETTCKVHVNVLDTND-L-NPLFYP-TEYEETV 167
Y + + I + KV L+ + L NP P +Y ++
Sbjct: 176 LYQTYHVLVGDLI-KFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSI 234
Query: 168 PEDLPLH--TSILR--VSAEDADLGRN-GEIYYSFRDMNEQFSIHPTSGVVT-------L 215
P PL + V+A+ LG GE R + + H + G+VT
Sbjct: 235 PISCPLIGVIQLAHYVVTAKL--LGFTPGE----LRSYLKGATGH-SQGLVTAVAIAETD 287
Query: 216 TRP--LKYTDRSVHDLVVLG-----------------QDRGSVFKGGGKPSS-------- 248
+ +++ L +G +D S+ G PS
Sbjct: 288 SWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILED--SLENNEGVPSPMLSISNLT 345
Query: 249 -AKLKIKVEQINLYGPE---IYVQSL---PDIVEQSYADIYAIVRVVDRDAGIHGEIASL 301
+++ V + N + P + + SL +V + G SL
Sbjct: 346 QEQVQDYVNKTNSHLPAGKQVEI-SLVNGAK----------NLV--------VSGPPQSL 386
Query: 302 DIVDGDPDGHFRIV--PTKID----PGTKKK----------------EYNIVVLKLLDRE 339
+ + R P+ +D P +++K + L++++
Sbjct: 387 YGL----NLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKD 442
Query: 340 IAPLGYNLTLRAVDKGTPPRETYKATQVHLVDLNDNKPVFDREIYEVDVPETTPVN---- 395
+ N++ A D P +T+ + DL I VD PV
Sbjct: 443 LV--KNNVSFNAKDIQIPVYDTFDGS-----DLRVLSGSISERI--VDCIIRLPVKWETT 493
Query: 396 -----TPII-----------RLKVSDADDGKNAQVFLEIVGGNEGGEFNINPE 432
T I+ L DG +V IV G +INP+
Sbjct: 494 TQFKATHILDFGPGGASGLGVL-THRNKDGTGVRV---IV----AGTLDINPD 538
Score = 38.9 bits (90), Expect = 0.011
Identities = 57/361 (15%), Positives = 93/361 (25%), Gaps = 137/361 (37%)
Query: 592 FEKVDCLGHVPRNLPIGREIITLSAIDFDAGNIISYRIVSGNEDGCFALDITSGVLSIAC 651
+ + D H G S +D N ++ I G E G I ++
Sbjct: 1646 WNRAD--NHFKDTY--G-----FSILDIVINNPVNLTIHFGGEKGK---RIRENYSAMIF 1693
Query: 652 D-LTDVRVNEREINVTATDSAHFSDVVRIRINLVSARRIPEPGKTLENDSGGFECKDTG- 709
+ + D ++ +I + + T ++ G T
Sbjct: 1694 ETIVDGKLKTEKIFKEINEHS--------------------TSYTFRSEKG--LLSATQF 1731
Query: 710 --VARRLTEVLAAAEKNNLRSQSYQEEFAMMP--SRYGEN---VHVPEFFSFPIELQVNE 762
A L E AA E L+S+ A S GE + + S E
Sbjct: 1732 TQPALTLMEK-AAFED--LKSKGLIPADATFAGHS-LGEYAALASLADVMSI-------E 1780
Query: 763 SVPLKSTLTKIIARDRDLGYNGKLVFGISSGD-----NDSVFRIDPDSGELKVVGYLDRE 817
S+ ++ + R G + D N + I+P +V +E
Sbjct: 1781 SL-VE------VVFYR-----GMTMQVAVPRDELGRSNYGMIAINPG----RVAASFSQE 1824
Query: 818 RTSEYTLNITVYDLGKPQKSTSKMLPITILDVNDNPPKFEKSLASFRVTENALNGTVIFK 877
+ K T ++ I VN N
Sbjct: 1825 ALQYVVERV--------GKRTGWLVEI----VNYNVE-----------------NQQY-- 1853
Query: 878 VNATDLDLGDNAKVVYSLMTDTQDFAVDSATG-------------SLYVSASLDRERQDL 924
V A GD A+D+ T L S SL+ L
Sbjct: 1854 VAA-----GDLR-------------ALDTVTNVLNFIKLQKIDIIELQKSLSLEEVEGHL 1895
Query: 925 Y 925
+
Sbjct: 1896 F 1896
Score = 38.5 bits (89), Expect = 0.018
Identities = 45/257 (17%), Positives = 76/257 (29%), Gaps = 99/257 (38%)
Query: 747 HVPEFFSFPIELQVNESVPLKSTLTKIIARDRDLGYNGKLVFGISSGDNDSVFRIDPDSG 806
H + + F I L + + P+ T+ G GK I + +F D
Sbjct: 1652 HFKDTYGFSI-LDIVINNPVNLTI-------HFGGEKGK---RIRENYSAMIFETIVDGK 1700
Query: 807 E--LKVVGYLDRERTSEYT-------LNITVYDLGKPQKSTSKMLP-ITILDVNDNPPKF 856
K+ ++ E ++ YT L+ T + T P +T++
Sbjct: 1701 LKTEKIFKEIN-EHSTSYTFRSEKGLLSATQF--------TQ---PALTLM--------- 1739
Query: 857 EKSLASFRV--TENALNGTVIF---------------KVNATDLDLGDNAKVVY---SLM 896
A+F ++ + F V + + +VV+ M
Sbjct: 1740 --EKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADV----MSIESLVEVVFYRGMTM 1793
Query: 897 TDTQDFAV--DSATGSLY---------VSASLDRERQDLYELKIRASDCDGRNDMYTLHA 945
AV D S Y V+AS +E L + R G
Sbjct: 1794 QV----AVPRDELGRSNYGMIAINPGRVAASFSQE--ALQYVVERVGKRTGW-------- 1839
Query: 946 DALVRVTIDDINDNAPN 962
LV + +N N N
Sbjct: 1840 --LVEI----VNYNVEN 1850
Score = 35.0 bits (80), Expect = 0.16
Identities = 36/245 (14%), Positives = 70/245 (28%), Gaps = 88/245 (35%)
Query: 5 WTPLN-----QWLTVV--ALLLPTVILTSDD-----------------IGRSSSLRFTQK 40
+TP + T L+ I +D IG +R +
Sbjct: 258 FTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIG----VR-CYE 312
Query: 41 DYNVSISENSNSKTYVTPEEK----M-GIYRGTSEVDIRFKISSGDRDKFFKAEERL-VG 94
Y + S + + E M I ++ ++ ++ + A +++ +
Sbjct: 313 AYPNTSLPPSILEDSLENNEGVPSPMLSI-SNLTQEQVQDYVN--KTNSHLPAGKQVEIS 369
Query: 95 DFWFLLIRTR-----TGNTDVL---NRE-RKDKYILHIKATITHRDGKKASYEETTCKVH 145
L+ +G L N RK KA + D + + E K
Sbjct: 370 -----LVNGAKNLVVSGPPQSLYGLNLTLRK------AKAP-SGLDQSRIPFSERKLKFS 417
Query: 146 VNVLDTNDLNPLFYPTEYEETVPEDLPLHTSILRVSAE--DADLGRNGEIY--------- 194
L P+ P H+ +L +++ + DL +N +
Sbjct: 418 NRFL------PVA------------SPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPV 459
Query: 195 YSFRD 199
Y D
Sbjct: 460 YDTFD 464
Score = 31.9 bits (72), Expect = 1.4
Identities = 17/117 (14%), Positives = 31/117 (26%), Gaps = 33/117 (28%)
Query: 987 ASDPDLGQGGVVRYT--IVSDNEADDVFSIDRLTGTIRVAKPLD-FEKR-----QVHSLV 1038
+ +L V ++ + S E V D++ L FE +H+L
Sbjct: 55 TTPAEL----VGKFLGYVSSLVEPSKVGQFDQVLNLC-----LTEFENCYLEGNDIHALA 105
Query: 1039 VRAKDNGSPPLYSEATLIVEVSDVNENMNAPVFSDFVYQATVKENQPIGTSLKPRLL 1095
+ L LI ++ A + +P L
Sbjct: 106 AKLLQENDTTLVKTKELI---------------KNY-ITARIMAKRPFDKKSNSALF 146
>1wyj_A Protocadherin beta 14; SS bond, structural genomics, riken
structural genomics/proteomics initiative, RSGI, NPPSFA;
NMR {Mus musculus}
Length = 125
Score = 53.8 bits (130), Expect = 8e-09
Identities = 28/117 (23%), Positives = 48/117 (41%), Gaps = 30/117 (25%)
Query: 862 SFRVTENALNGTVIFKVNATDLDLGD------NAKVVYSLMTDTQDFAVDSATGSLYVSA 915
++ V E G+++ + A DL L A+++ + Q ++ +G+L +
Sbjct: 14 TYSVLEETDRGSLVGNL-AKDLGLSLRELITRGAQILSK--GNKQLLQLEQKSGNLLLKE 70
Query: 916 SLDRERQDLYELKIRASDCDGRNDMYTLHADAL---------VRVTIDDINDNAPNF 963
LDRE EL C G + LH L + + D+ND+AP F
Sbjct: 71 KLDRE-----EL------C-GSTNPCILHFQVLLKSPVQFIQGEIQLQDVNDHAPEF 115
Score = 46.1 bits (110), Expect = 4e-06
Identities = 25/92 (27%), Positives = 42/92 (45%), Gaps = 15/92 (16%)
Query: 778 RDLGYN-GKLV---FGISSGDNDSVFRIDPDSGELKVVGYLDRE----RTSEYTLNITVY 829
+DLG + +L+ I S N + +++ SG L + LDRE T+ L+ V
Sbjct: 32 KDLGLSLRELITRGAQILSKGNKQLLQLEQKSGNLLLKEKLDREELCGSTNPCILHFQVL 91
Query: 830 DLGKPQKSTSKMLPIT--ILDVNDNPPKFEKS 859
L P + + + DVND+ P+F +
Sbjct: 92 -LKSP----VQFIQGEIQLQDVNDHAPEFMED 118
Score = 36.8 bits (86), Expect = 0.006
Identities = 18/118 (15%), Positives = 35/118 (29%), Gaps = 20/118 (16%)
Query: 388 VPETTPVNTPI------IRLKVSDADDGKNAQVFLEIVGGNEGGEFNINPETGMLYTAVT 441
V E T + + + L + + +I+ + ++G L
Sbjct: 17 VLEETDRGSLVGNLAKDLGLSLRELITRG-----AQILSKGNKQLLQLEQKSGNLLLKEK 71
Query: 442 LDAE----DKAFYTLTVSAIDQGNAGTRKQSAAKVKVNIVDTNDNDPLFDSPEMEVSI 495
LD E L + + + ++ + D ND+ P F E S
Sbjct: 72 LDREELCGSTNPCILHFQVLLKS-----PVQFIQGEIQLQDVNDHAPEFMEDESGPSS 124
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 58.7 bits (141), Expect = 9e-09
Identities = 67/463 (14%), Positives = 136/463 (29%), Gaps = 136/463 (29%)
Query: 5 WTPLNQWLTVVALLLPTVILTSDDIGRSSSLRFTQKDY--------NVSISE-----NSN 51
++ T + + L I K Y NV ++ N +
Sbjct: 206 LYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLS 265
Query: 52 SKTYVTPEEKMGIYRGTSEVDI-----RFKISSGDRDKFFKAEERLVGDFWFLLIRTRTG 106
K +T R D IS +E LL++
Sbjct: 266 CKILLTT-------RFKQVTDFLSAATTTHISLDHHSMTLTPDEVKS-----LLLKYLDC 313
Query: 107 NTDVLNRERKDKYILHIK---ATITHRDG-------KKASYE--ETTCKVHVNVLDTNDL 154
L RE + +I RDG K + + T + +NVL+ +
Sbjct: 314 RPQDLPREVLTTNPRRLSIIAESI--RDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEY 371
Query: 155 NPLFYPTEYEETV--PEDLPLHTSILRVSAEDADLGRNGEIYYSFRDMNEQFSIHPTSGV 212
+ ++ P + T +L + + + +N+ +H S
Sbjct: 372 RKM-----FDRLSVFPPSAHIPTILLSL------IWFDVIKSDVMVVVNK---LHKYS-- 415
Query: 213 VTLTRPLKYTDRSVHDLVVLGQDRGSVFKGGGKPSSAKLKIKVEQINLYGPEIYVQSLPD 272
+ + K + S+ + + +LK+K+E ++
Sbjct: 416 -LVEKQPKESTISIPSIYL------------------ELKVKLENE----YALHRS---- 448
Query: 273 IVEQSYADIYAIVRVVDRDAGIHGEIASLDIVDGDPDG--------HFRIVPTKIDPGTK 324
IV+ Y I + D D D++ D H + I+ +
Sbjct: 449 IVDH-----YNIPKTFDSD----------DLIPPYLDQYFYSHIGHHLK----NIEHPER 489
Query: 325 KKEYNIVVLKL--LDREIAPLGYNLTLRAVDKGTPPR-ETYKATQVHLVDLNDNKPVFDR 381
+ +V L L+++I T + + YK ++ DN P ++R
Sbjct: 490 MTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKP---YIC---DNDPKYER 543
Query: 382 EIYE----VDVPETTPVNTP---IIRLKVSDADDGKNAQVFLE 417
+ + E + + ++R+ + D+ +F E
Sbjct: 544 LVNAILDFLPKIEENLICSKYTDLLRIALMAEDEA----IFEE 582
Score = 52.5 bits (125), Expect = 8e-07
Identities = 93/672 (13%), Positives = 199/672 (29%), Gaps = 204/672 (30%)
Query: 68 TSEVDIRFKISSGDRDKFFKAEERLVGDFWFLLIRTRTGNTDVLNRERKDKYILHIKATI 127
T E ++K D E+ V +F ++ + +L++E D I+ K +
Sbjct: 11 TGEHQYQYK------DILSVFEDAFVDNFDCKDVQDMPKS--ILSKEEIDH-IIMSKDAV 61
Query: 128 THRD---GKKASYEETTCKVHVN-VLDTNDLNPLFYPTEYEETVPEDLPLHTSILRVSAE 183
+ S +E + V VL N Y + E
Sbjct: 62 SGTLRLFWTLLSKQEEMVQKFVEEVLRIN------YKFLMS--------------PIKTE 101
Query: 184 DADLGRNGEIYYSFRDM----NEQFSIHPTS---GVVTLTRPLKYTDRSVHDLVVLG--- 233
+Y RD N+ F+ + S + L + L R ++++ G
Sbjct: 102 QRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQAL-LELRPAKNVLIDGVLG 160
Query: 234 -----------QDRG--SVFKGG------GKPSSAKLKIKVEQINLY------------- 261
+S + +++ Q L
Sbjct: 161 SGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQ-KLLYQIDPNWTSRSDH 219
Query: 262 --GPEIYVQSLPD-----IVEQSYA-------DIY--AIVRVVD---------RDAGIHG 296
++ + S+ + + Y ++ + R +
Sbjct: 220 SSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQV-- 277
Query: 297 EIASLDIVDGDPDGHFRIVPTKIDPGTKKKEYNIVVLKLLD-------RE---IAPLGYN 346
D + H + E ++LK LD RE P +
Sbjct: 278 ----TDFLSAATTTHISLD--HHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLS 331
Query: 347 LTLRAVDKGTPPR-ETYKATQV----HLVD--LNDNKPVFDREIYEVDV---PETTPVNT 396
+ + + + +K +++ LN +P R++++ + P + +
Sbjct: 332 I-IAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFD-RLSVFPPSAHI-- 387
Query: 397 PIIRLKVS-DADDGKNAQVFLE-------IVGGNEGGEFNINPETGMLYTAVTLDAEDKA 448
P I L + + V + + + +I +Y + + E++
Sbjct: 388 PTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIP----SIYLELKVKLENE- 442
Query: 449 FYTLTVSAIDQGNAGTRKQSAAKVKVNIVDTNDNDPLFDSPEMEVSINENEPAGTSVIKV 508
Y L S +D NI T D+D L
Sbjct: 443 -YALHRSIVDH--------------YNIPKTFDSDDLIPPYL------------------ 469
Query: 509 TAKDKDSGENAYISYSIANLKPVPFEIDHFSGVIKTTQVLDYESMRREYILRVRASDWGL 568
D ++I + + N++ + F V LD+ + ++ +R ++ W
Sbjct: 470 -----DQYFYSHIGHHLKNIEHPE-RMTLFRMVF-----LDFRFLEQK--IRHDSTAWNA 516
Query: 569 P-YRRQTEMQLKIKLLDVNDNRPQFEK-VDCLGH-VPR---NLPIGRE--IITLSAIDFD 620
T QLK + DN P++E+ V+ + +P+ NL + ++ + A+ +
Sbjct: 517 SGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRI-ALMAE 575
Query: 621 AGNII--SYRIV 630
I +++ V
Sbjct: 576 DEAIFEEAHKQV 587
Score = 50.2 bits (119), Expect = 4e-06
Identities = 87/689 (12%), Positives = 189/689 (27%), Gaps = 214/689 (31%)
Query: 191 GEIYYSFRDMNEQF-----SIHPTSGVVTLTRPLKYTDRSVHDLVVLGQDRGSVFKGGGK 245
GE Y ++D+ F V + + + + + +++ +
Sbjct: 12 GEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSI-LSKEEIDHIIMSKDAVSGTLR---- 66
Query: 246 PSSAKLKIKVEQINLYGPEIYVQSLPDIVEQSYADIYAIVRVVDRDAGIHGE--IASLDI 303
L + E+ + + +++ +Y + + ++ R + I D
Sbjct: 67 -----LFWTLLS---KQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDR 118
Query: 304 VDGDPDGHFRIVP---TKIDPGTK--------KKEYNIVVL------K-------LLDRE 339
+ D +++ P K + N+++ K L +
Sbjct: 119 LYNDNQ---VFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYK 175
Query: 340 I---APLG-YNLTLRAVDKGTPPRETYKATQ--VHLVDLNDNKPVFDREIYEVDVPETTP 393
+ + L L+ + P + Q ++ +D N D
Sbjct: 176 VQCKMDFKIFWLNLKNCNS---PETVLEMLQKLLYQIDPNWTS--------RSDHSSNIK 224
Query: 394 VNTPIIRLKVSDA-------------DDGKNAQVFLEIVGGNEGGEFNINPETGMLYTAV 440
+ I+ ++ + +NA+ + FN++ + L T
Sbjct: 225 LRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAW---------NAFNLSCKI--LLT-- 271
Query: 441 TLDAEDKAFYTLTVSAIDQGNAGTRKQSAAKVKVNIVDTNDNDPLFDSPEMEVSINENEP 500
T D +A T + + + E++
Sbjct: 272 TRFK----------QVTDFLSAATTTH---------ISLDHHSMTLTPDEVK-------- 304
Query: 501 AGTSVIKVTAKDKDSGENAYISYSIANLKPV-----PFEIDHFSGVIKTTQVLDYESMRR 555
+ K Y+ +L P + + I+ D +
Sbjct: 305 ------SLLLK--------YLDCRPQDLPREVLTTNPRRLSIIAESIR-----DGLA-TW 344
Query: 556 EYILRVRASDWGLPYRRQTEMQLKIKLLDVNDNRPQFEKVDCLGHVPRNLPIGREIITLS 615
+ V + T ++ + +L+ + R F++ L P + I I LS
Sbjct: 345 DNWKHVNCD------KLTTIIESSLNVLEPAEYRKMFDR---LSVFPPSAHI--PTILLS 393
Query: 616 -----AIDFDAGNII----SYRIVSGNEDGCFALDITSGVLSIACDLTDVRVNEREINVT 666
I D ++ Y +V + T + SI +L NE +
Sbjct: 394 LIWFDVIKSDVMVVVNKLHKYSLVEKQPK-----ESTISIPSIYLELKVKLENEYAL--- 445
Query: 667 ATDSAHFSDVVRIRINLVSARRIPEPGKTLENDSGGFECKDTGVARRLTEVLAAAEKNNL 726
H ++V IP KT ++D D + L E
Sbjct: 446 -----H--------RSIVDHYNIP---KTFDSDDLIPPYLDQYFYSHIGHHLKNIE---- 485
Query: 727 RSQSYQEEFAMMPSRYGENVHVPEFFSFPIELQVNESVPLKSTLTKIIARDRDLGYNGKL 786
+ E + + + F F +E ++ + I+ + L +
Sbjct: 486 ----HPERMTLFRMVFLD-------FRF-LEQKIRHDSTAWNASGSILNTLQQLKFYKPY 533
Query: 787 VFGISSGDNDSVFRIDPDSGELKVVGYLD 815
+ DND + E V LD
Sbjct: 534 IC-----DNDPKY-------ERLVNAILD 550
>1wuz_A Pcdha4 protein, CNR-EC1; cadherin, heteronuclear protocadherin,
cell adhesion; NMR {Mus musculus}
Length = 103
Score = 45.6 bits (109), Expect = 3e-06
Identities = 29/113 (25%), Positives = 47/113 (41%), Gaps = 30/113 (26%)
Query: 862 SFRVTENALNGTVIFKVNATDLDLGD------NAKVVYSLMTDTQDFAVDSATGSLYVSA 915
+ + E A +GT + ++ A DL L +V V+ G L+V++
Sbjct: 6 HYSIPEEAKHGTFVGRI-AQDLGLELTELVPRLFRVASK--DRGDLLEVNLQNGILFVNS 62
Query: 916 SLDRERQDLYELKIRASDCDGRNDMYTLHADAL---------VRVTIDDINDN 959
+DRE EL C GR+ ++H + + V V + DINDN
Sbjct: 63 RIDRE-----EL------C-GRSAECSIHLEVIVDRPLQVFHVEVEVRDINDN 103
Score = 38.3 bits (90), Expect = 0.002
Identities = 22/85 (25%), Positives = 44/85 (51%), Gaps = 15/85 (17%)
Query: 778 RDLGYN-GKLV---FGISSGDNDSVFRIDPDSGELKVVGYLDRE----RTSEYTLNITVY 829
+DLG +LV F ++S D + ++ +G L V +DRE R++E ++++ V
Sbjct: 24 QDLGLELTELVPRLFRVASKDRGDLLEVNLQNGILFVNSRIDREELCGRSAECSIHLEVI 83
Query: 830 DLGKPQKSTSKMLPIT--ILDVNDN 852
+ +P ++ + + D+NDN
Sbjct: 84 -VDRP----LQVFHVEVEVRDINDN 103
>1op4_A Neural-cadherin; beta sandwich, cadherin-like domain, cell
adhesion; NMR {Mus musculus} SCOP: b.1.6.1
Length = 159
Score = 42.5 bits (99), Expect = 1e-04
Identities = 25/120 (20%), Positives = 52/120 (43%), Gaps = 14/120 (11%)
Query: 376 KPVFDREIYEVDVPETTPVNTPIIRLKVSDADDGKNAQVFLEIVGGNEGGEFNINPETGM 435
K F ++Y +P+ P++ +K S+ + + +V E +E +F ++ + G
Sbjct: 33 KTGFPEDVYSAVLPKDVHEGQPLLNVKFSNCN--RKRKVQYES---SEPADFKVDED-GT 86
Query: 436 LYTA--VTLDAEDKAFYTLTVSAIDQGNAGTRKQSAAKVKVNIVDTNDNDPLFDSPEMEV 493
+Y L AE F + A D T+++ V ++ T +P+ + E+E
Sbjct: 87 VYAVRSFPLTAEQAKF---LIYAQD---KETQEKWQVAVNLSREPTLTEEPMKEPHEIEE 140
Score = 39.8 bits (92), Expect = 0.001
Identities = 20/105 (19%), Positives = 35/105 (33%), Gaps = 17/105 (16%)
Query: 134 KASYEETTCKVHVNVLDTNDLNPLFYPTEYEETVPEDLPLHTSILRVSAEDADLGRNGEI 193
+AS E CK F Y +P+D+ +L V + + R ++
Sbjct: 24 EASGEIALCK------------TGFPEDVYSAVLPKDVHEGQPLLNVKFSNCN--RKRKV 69
Query: 194 YYSFRDMNEQFSIHPTSGVVTLTRPLKYTDRSVHDLVVLGQDRGS 238
Y + F + G V R T ++ QD+ +
Sbjct: 70 QYESSE-PADFKVDE-DGTVYAVRSFPLTAEQAK-FLIYAQDKET 111
Score = 34.8 bits (79), Expect = 0.053
Identities = 17/109 (15%), Positives = 36/109 (33%), Gaps = 9/109 (8%)
Query: 939 DMYTLHADALVRVTIDDINDNAPNFALPNYSVKVREDIPVGTVVAILSASDPDLGQGGVV 998
+ D + +I F YS + +D+ G +L+ + + V
Sbjct: 13 SGHIDDDDKHME-ASGEIALCKTGFPEDVYSAVLPKDVHEGQ--PLLNVKFSNCNRKRKV 69
Query: 999 RYTIVSDNEADDVFSIDRLTGTIRVAKPLDFEKRQVHSLVVRAKDNGSP 1047
+Y + F +D GT+ + Q ++ A+D +
Sbjct: 70 QYESSEPAD----FKVDE-DGTVYAVRSFPLTAEQ-AKFLIYAQDKETQ 112
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 34.2 bits (77), Expect = 0.085
Identities = 13/52 (25%), Positives = 22/52 (42%), Gaps = 22/52 (42%)
Query: 920 ERQDLYELKIRASDCDGRNDMYTLHADALVRVTIDDINDNAPNFALPNYSVK 971
E+Q L K++AS L+AD D+AP A+ +++
Sbjct: 18 EKQALK--KLQAS--------LKLYAD-----------DSAPALAI-KATME 47
Score = 34.2 bits (77), Expect = 0.11
Identities = 10/32 (31%), Positives = 16/32 (50%), Gaps = 5/32 (15%)
Query: 1030 EKRQVHSLVVRAK---DNGSPPLYSEATLIVE 1058
EK+ + L K D+ +P L +AT +E
Sbjct: 18 EKQALKKLQASLKLYADDSAPALAIKAT--ME 47
Score = 31.5 bits (70), Expect = 0.68
Identities = 8/32 (25%), Positives = 14/32 (43%), Gaps = 11/32 (34%)
Query: 250 KLKIKVE-QINLYGPEIYVQSLPDI-----VE 275
LK K++ + LY + S P + +E
Sbjct: 21 ALK-KLQASLKLYADD----SAPALAIKATME 47
Score = 29.1 bits (64), Expect = 5.2
Identities = 9/27 (33%), Positives = 13/27 (48%), Gaps = 4/27 (14%)
Query: 324 KKKEYNIVVLKLLDREIAP-LGYNLTL 349
KK + + LKL + AP L T+
Sbjct: 23 KKLQAS---LKLYADDSAPALAIKATM 46
>3ead_A Na/Ca exchange protein; CBD1, calcium regulation, membrane,
transmembrane, membrane; 2.25A {Drosophila melanogaster}
Length = 137
Score = 32.7 bits (75), Expect = 0.23
Identities = 30/148 (20%), Positives = 45/148 (30%), Gaps = 30/148 (20%)
Query: 851 DNPPKFEKSLASFRVTENALNGTVIFKVNATDLDLGDNAKVVYSLMTDT----QD----- 901
D+P + + V EN G +V D+ A V Y T D
Sbjct: 2 DDPIRMYFEPGHYTVMENC--GEFEVRVVRRG-DISTYASVEYETQDGTASAGTDFVGRK 58
Query: 902 ----FAVDSATGSLYVSASLDRERQDLYE----LKIRASDCDGRNDMYTLHADALVRVTI 953
F + D D++E IR + L + V I
Sbjct: 59 GLLSFPPGVDEQRFRIEVIDD----DVFEEDECFYIRLFNPSEG---VKLAVPMIATVMI 111
Query: 954 DDINDNAPNFALPNYSVKVREDIPVGTV 981
D +D+A FA + ++ E VG
Sbjct: 112 LD-DDHAGIFAFTDSVFEITES--VGRF 136
>3us9_A Sodium/calcium exchanger 1; beta-sandwich, calcium binding protein,
intracellular, metal protein; 2.68A {Canis lupus
familiaris} PDB: 2klt_A
Length = 295
Score = 31.5 bits (71), Expect = 1.3
Identities = 27/182 (14%), Positives = 52/182 (28%), Gaps = 33/182 (18%)
Query: 850 NDNPPKFEKSLASFRVTENALNGTVIFKVNATDLDLGDNAKVVYSLMTDT----QDFAVD 905
+ + K +++ EN GTV + DL + V + T D+
Sbjct: 6 HHHVSKIFFEQGTYQCLENC--GTVALTIIRRGGDLTNTVFVDFRTEDGTANAGSDYEFT 63
Query: 906 SAT-----------------------GSLYVSASLDRERQDLYELKIRASDCDGRNDMYT 942
T L + + + + + +
Sbjct: 64 EGTVVFKPGETQKEIRVGIIDDDIFEEDKNFLVHLSNVKVSSEASEDGILEANHVSALAC 123
Query: 943 LHADALVRVTIDDINDNAPNFALPNYSVKVREDIPVGTVVAILSASDPDLGQGGVVRYTI 1002
L + + VTI D +D+A F V E I + V + ++ +V Y
Sbjct: 124 LGSPSTATVTIFD-DDHAGIFTFEEPVTHVSESIGIMEVKVLRTS---GARGNVIVPYKT 179
Query: 1003 VS 1004
+
Sbjct: 180 IE 181
>3k3k_A Abscisic acid receptor PYR1; ABA receptor, plant hormone receptor,
A sensor, drought tolerance, plant development; HET:
A8S; 1.70A {Arabidopsis thaliana} PDB: 3njo_A* 3qn1_A*
3k90_A* 3jrq_B* 3kdj_A* 3nef_A* 3neg_A* 3nmn_A* 3kay_A*
Length = 211
Score = 30.9 bits (69), Expect = 1.5
Identities = 27/116 (23%), Positives = 40/116 (34%), Gaps = 13/116 (11%)
Query: 279 ADIYAIVRVVDRDAGIHGEIASLDIVDGDPD--GHFRIVPTKID-PGTKKKEYNIVVLKL 335
+++IVR D+ I S + G R V P E L +
Sbjct: 63 ELVWSIVRRFDKPQTYKHFIKSCSVEQNFEMRVGCTRDVIVISGLPANTSTE----RLDI 118
Query: 336 LDREIAPLGYNLTLRAVDKGTPPRETYKAT-QVHLVDLNDNKPVFDREIYEVDVPE 390
LD E G+ ++ G YK+ VH + + E Y VD+PE
Sbjct: 119 LDDERRVTGF-----SIIGGEHRLTNYKSVTTVHRFEKENRIWTVVLESYVVDMPE 169
>2yhg_A SDE_182CT, cellulose-binding protein; hydrolase, glycoside hydrolase;
HET: BTB; 1.08A {Saccharophagus degradans}
Length = 437
Score = 30.9 bits (69), Expect = 2.4
Identities = 21/94 (22%), Positives = 40/94 (42%), Gaps = 16/94 (17%)
Query: 975 DIPVGTVVAILSAS---DPDLGQGGVVRYTIVSDNEAD------DVFSIDRLTGTIRVAK 1025
+ G+ V L AS DPD G + Y+ EAD + + + +++
Sbjct: 350 NASAGSTV-SLDASGSSDPD---GDSLNYSWSHYGEADSYSGSVSISNSSSASANVQIPS 405
Query: 1026 PLDFEKRQVHSLVVRAKDNGSPPLYSEATLIVEV 1059
+ +++ +DNGSP LY+ +++ V
Sbjct: 406 N---AGGKDIHILLTLRDNGSPNLYAYRRVVINV 436
>3fg1_A Allene oxide synthase-lipoxygenase protein; arichidonic metabolism,
dioxygenase, fatty ACI biosynthesis, heme, iron, lipid
synthesis, lyase; HET: GOL; 1.85A {Plexaura homomalla}
PDB: 3fg4_A* 3fg3_A* 2fnq_A
Length = 696
Score = 29.5 bits (65), Expect = 7.1
Identities = 12/71 (16%), Positives = 22/71 (30%), Gaps = 9/71 (12%)
Query: 442 LDAEDKAFYTLTVSAIDQGNAGTRKQSAAKVKVNIVDTNDNDPLFDSPEMEVSINENEPA 501
+ A Y + V D+ +AGT A + + I + +++ E
Sbjct: 1 MHHHHHAIYNVEVETGDREHAGTD----ATITIRITGAKG-----RTDYLKLDKGSFEAG 51
Query: 502 GTSVIKVTAKD 512
V D
Sbjct: 52 SKEQYTVQGFD 62
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta
propeller, hydrolase, oligop SIZE selectivity; HET: GOL;
1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A*
1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Length = 582
Score = 29.4 bits (66), Expect = 8.3
Identities = 8/47 (17%), Positives = 19/47 (40%)
Query: 783 NGKLVFGISSGDNDSVFRIDPDSGELKVVGYLDRERTSEYTLNITVY 829
K+ G+ + + +DP G ++ + ++ +S IT
Sbjct: 205 GMKVTAGLETAREARLVTVDPRDGSVEDLELPSKDFSSYRPTAITWL 251
>3rt2_A Abscisic acid receptor PYL10; ABA-independent PP2C inhibitor,
PP2CS, hydrolase inhibitor; 1.50A {Arabidopsis thaliana}
PDB: 3r6p_A* 3qtj_A* 3uqh_A 3rt0_C
Length = 183
Score = 28.5 bits (63), Expect = 9.5
Identities = 30/125 (24%), Positives = 48/125 (38%), Gaps = 12/125 (9%)
Query: 269 SLPDIVEQSYADIYAIVRVVDRDAGIHGEIASLDIVDGDPD-GHFRIVPTKID-PGTKKK 326
+L ++ +++IVR D I+ + + G R V K P TK
Sbjct: 30 TLVKHIKAPLHLVWSIVRRFDEPQKYKPFISRCVVQGKKLEVGSVREVDLKSGLPATKST 89
Query: 327 EYNIVVLKLLDREIAPLGYNLTLRAVDKGTPPRETYKAT-QVHLVDLNDNKPVFDREIYE 385
E VL++LD LG + G + Y +T +H ++ E +
Sbjct: 90 E----VLEILDDNEHILGIRIV-----GGDHRLKNYSSTISLHSETIDGKTGTLAIESFV 140
Query: 386 VDVPE 390
VDVPE
Sbjct: 141 VDVPE 145
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.135 0.383
Gapped
Lambda K H
0.267 0.0550 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 16,797,501
Number of extensions: 1080856
Number of successful extensions: 3331
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2231
Number of HSP's successfully gapped: 280
Length of query: 1095
Length of database: 6,701,793
Length adjustment: 104
Effective length of query: 991
Effective length of database: 3,798,009
Effective search space: 3763826919
Effective search space used: 3763826919
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 62 (28.1 bits)