BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10415
(130 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9VQE9|TMTC1_DROME Transmembrane and TPR repeat-containing protein CG31690
OS=Drosophila melanogaster GN=CG31690 PE=2 SV=3
Length = 859
Score = 124 bits (311), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 56/106 (52%), Positives = 75/106 (70%)
Query: 1 RAILTNPDVQLKTPVGDLFNNDYWGTPITSPNSHGSYRPLTVLTFRLNYLACGLKPRSFH 60
RAIL N DV P+ +L ND+WGTP+ SHGS+RPL VL+FRLNYLA G+ P +H
Sbjct: 48 RAILANGDVTGARPLANLLRNDFWGTPLVDSGSHGSWRPLCVLSFRLNYLAGGMTPLGYH 107
Query: 61 LINNLLHSAITYLVYILSSYVLPNRRARLFASLIFAVHPIHTEAVS 106
L+N +LH T+LV++++ +LP+R L A +FAVHP HTEAV+
Sbjct: 108 LVNVMLHCVATWLVFLVARTLLPSRMGVLAAGALFAVHPAHTEAVA 153
>sp|Q8BRH0|TMTC3_MOUSE Transmembrane and TPR repeat-containing protein 3 OS=Mus musculus
GN=Tmtc3 PE=2 SV=2
Length = 920
Score = 121 bits (303), Expect = 1e-27, Method: Composition-based stats.
Identities = 54/105 (51%), Positives = 77/105 (73%), Gaps = 1/105 (0%)
Query: 2 AILTNPDVQLKTPVGDLFNNDYWGTPITSPNSHGSYRPLTVLTFRLNYLACGLKPRSFHL 61
AIL N D+ TP+ LF ND+WGTP++ SH SYRPLTVLTFRLNYL LKP S+HL
Sbjct: 40 AILDNKDLHPSTPLKTLFQNDFWGTPMSEERSHKSYRPLTVLTFRLNYLLSELKPMSYHL 99
Query: 62 INNLLHSAITYLVYILSSYVLPNRRARLFASLIFAVHPIHTEAVS 106
+N + H+ ++ ++++ + ++R+ + A+L+FAVHPIHTEAV+
Sbjct: 100 LNTVFHAVVS-VIFLKVCRLFLDKRSSMIAALLFAVHPIHTEAVT 143
>sp|Q6ZXV5|TMTC3_HUMAN Transmembrane and TPR repeat-containing protein 3 OS=Homo sapiens
GN=TMTC3 PE=1 SV=2
Length = 915
Score = 119 bits (299), Expect = 5e-27, Method: Composition-based stats.
Identities = 56/105 (53%), Positives = 74/105 (70%), Gaps = 1/105 (0%)
Query: 2 AILTNPDVQLKTPVGDLFNNDYWGTPITSPNSHGSYRPLTVLTFRLNYLACGLKPRSFHL 61
AIL N D+ TP+ LF ND+WGTP++ SH SYRPLTVLTFRLNYL LKP S+HL
Sbjct: 35 AILDNKDLHPSTPLKTLFQNDFWGTPMSEERSHKSYRPLTVLTFRLNYLLSELKPMSYHL 94
Query: 62 INNLLHSAITYLVYILSSYVLPNRRARLFASLIFAVHPIHTEAVS 106
+N + H+ ++ + + L N ++ + ASL+FAVHPIHTEAV+
Sbjct: 95 LNMIFHAVVSVIFLKVCKLFLDN-KSSVIASLLFAVHPIHTEAVT 138
>sp|Q9V3X5|TMTC2_DROME Transmembrane and TPR repeat-containing protein CG4341
OS=Drosophila melanogaster GN=CG4341 PE=2 SV=1
Length = 938
Score = 115 bits (289), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 59/107 (55%), Positives = 71/107 (66%), Gaps = 1/107 (0%)
Query: 1 RAILTNPDVQLKTPVGDLFNNDYWGTPITSPNSHGSYRPLTVLTFRLNYL-ACGLKPRSF 59
RAIL N DV TP F+ND+WGTP+T SHGS+RPL VL+FRLNYL G P F
Sbjct: 60 RAILANADVSGGTPWQRSFSNDFWGTPLTDSGSHGSWRPLCVLSFRLNYLIGGGFAPWGF 119
Query: 60 HLINNLLHSAITYLVYILSSYVLPNRRARLFASLIFAVHPIHTEAVS 106
HL+NNLLH T LV ++ +L + A L A +FA HPIHTEAV+
Sbjct: 120 HLVNNLLHCVATALVVRVARTLLASVWAVLAAGALFAAHPIHTEAVA 166
>sp|Q6DCD5|TMTC2_XENLA Transmembrane and TPR repeat-containing protein 2 OS=Xenopus laevis
GN=tmtc2 PE=2 SV=1
Length = 836
Score = 108 bits (269), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 57/106 (53%), Positives = 70/106 (66%)
Query: 1 RAILTNPDVQLKTPVGDLFNNDYWGTPITSPNSHGSYRPLTVLTFRLNYLACGLKPRSFH 60
RAI TN D+ +TP +F ND+WGT +T SH SYRPL L+FRLNYL GL P ++H
Sbjct: 29 RAIKTNQDLLPETPWNHIFFNDFWGTLLTHSGSHKSYRPLCTLSFRLNYLFGGLDPWNYH 88
Query: 61 LINNLLHSAITYLVYILSSYVLPNRRARLFASLIFAVHPIHTEAVS 106
L+N LLHSA+T L L + + L A L+FA HPIHTEAVS
Sbjct: 89 LVNVLLHSAVTGLFTNLCKALFGSGCWTLIAGLLFASHPIHTEAVS 134
>sp|Q8BG19|TMTC4_MOUSE Transmembrane and TPR repeat-containing protein 4 OS=Mus musculus
GN=Tmtc4 PE=2 SV=1
Length = 741
Score = 106 bits (264), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 55/120 (45%), Positives = 78/120 (65%), Gaps = 14/120 (11%)
Query: 1 RAILTNPDVQLKTPVGDLFNNDYWGTPITSPNSHGSYRPLTVLTFRLN-YLACGLKPRSF 59
AI+ N D+Q TP+GDL+++D+WG+ ++S SH SYRPLTVLTFR+N YL+ G P F
Sbjct: 47 EAIVNNKDLQSDTPLGDLWHHDFWGSKLSSNTSHKSYRPLTVLTFRINYYLSGGFHPVGF 106
Query: 60 HLINNLLHSAITYLVYILSSYVLPNR-------------RARLFASLIFAVHPIHTEAVS 106
H++N LLH +I+ L+ + S + RA L A+L+FAVHP+HTE V+
Sbjct: 107 HVVNILLHGSISILMLDVFSVLFGGLQYTGKGQRVHLAPRASLLATLLFAVHPVHTECVA 166
>sp|Q8N394|TMTC2_HUMAN Transmembrane and TPR repeat-containing protein 2 OS=Homo sapiens
GN=TMTC2 PE=2 SV=1
Length = 836
Score = 105 bits (262), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 54/106 (50%), Positives = 69/106 (65%)
Query: 1 RAILTNPDVQLKTPVGDLFNNDYWGTPITSPNSHGSYRPLTVLTFRLNYLACGLKPRSFH 60
RAI TN D+ +TP +F ND+WGT +T SH SYRPL L+FRLN+ GL P S+H
Sbjct: 29 RAIKTNQDLLPETPWTHIFYNDFWGTLLTHSGSHKSYRPLCTLSFRLNHAIGGLNPWSYH 88
Query: 61 LINNLLHSAITYLVYILSSYVLPNRRARLFASLIFAVHPIHTEAVS 106
L+N LLH+A+T L S +L + A L+FA HPIHTEAV+
Sbjct: 89 LVNVLLHAAVTGLFTSFSKILLGDGYWTFMAGLMFASHPIHTEAVA 134
>sp|Q56A06|TMTC2_MOUSE Transmembrane and TPR repeat-containing protein 2 OS=Mus musculus
GN=Tmtc2 PE=2 SV=1
Length = 836
Score = 105 bits (261), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 54/106 (50%), Positives = 69/106 (65%)
Query: 1 RAILTNPDVQLKTPVGDLFNNDYWGTPITSPNSHGSYRPLTVLTFRLNYLACGLKPRSFH 60
RAI TN D+ +TP +F ND+WGT +T SH SYRPL L+FRLN+ GL P S+H
Sbjct: 29 RAIKTNQDLLPETPWTHIFYNDFWGTLLTHSGSHKSYRPLCTLSFRLNHAIGGLNPWSYH 88
Query: 61 LINNLLHSAITYLVYILSSYVLPNRRARLFASLIFAVHPIHTEAVS 106
L+N LLH+A+T L S +L + A L+FA HPIHTEAV+
Sbjct: 89 LVNVLLHAAVTGLFTRFSKALLGDGYWTFMAGLMFASHPIHTEAVA 134
>sp|Q3UV71|TMTC1_MOUSE Transmembrane and TPR repeat-containing protein 1 OS=Mus musculus
GN=Tmtc1 PE=2 SV=2
Length = 942
Score = 97.4 bits (241), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 50/107 (46%), Positives = 66/107 (61%), Gaps = 2/107 (1%)
Query: 2 AILTNPDVQLKTPV-GDLFNNDYWGTPITSPNSHGSYRPLTVLTFRLNYLACGLKPRSFH 60
AI+ NPDV+ TP+ +F ND+WG + SH SYRPL VL+FRLN G+ P FH
Sbjct: 55 AIVNNPDVRPGTPLRWAIFANDFWGKGLADSTSHKSYRPLCVLSFRLNIFLTGMNPFYFH 114
Query: 61 LINNLLHSAIT-YLVYILSSYVLPNRRARLFASLIFAVHPIHTEAVS 106
+N +LH +T L+Y V NR +L+FAVHP+HTEAV+
Sbjct: 115 AVNVILHCLVTLVLMYTCDKTVFKNRGLAFVTALLFAVHPVHTEAVA 161
>sp|Q8IUR5|TMTC1_HUMAN Transmembrane and TPR repeat-containing protein 1 OS=Homo sapiens
GN=TMTC1 PE=1 SV=3
Length = 882
Score = 96.7 bits (239), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 50/107 (46%), Positives = 65/107 (60%), Gaps = 2/107 (1%)
Query: 2 AILTNPDVQLKTPV-GDLFNNDYWGTPITSPNSHGSYRPLTVLTFRLNYLACGLKPRSFH 60
AI+ NPDV+ P+ +F ND+WG + SH SYRPL VLTF+LN G+ P FH
Sbjct: 56 AIVNNPDVRPGAPLRWGIFTNDFWGKGMAENTSHKSYRPLCVLTFKLNIFLTGMNPFYFH 115
Query: 61 LINNLLHSAIT-YLVYILSSYVLPNRRARLFASLIFAVHPIHTEAVS 106
+N +LH +T L+Y V NR +L+FAVHPIHTEAV+
Sbjct: 116 AVNIILHCLVTLVLMYTCDKTVFKNRGLAFVTALLFAVHPIHTEAVA 162
>sp|Q5T4D3|TMTC4_HUMAN Transmembrane and TPR repeat-containing protein 4 OS=Homo sapiens
GN=TMTC4 PE=2 SV=2
Length = 741
Score = 94.7 bits (234), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 58/120 (48%), Positives = 80/120 (66%), Gaps = 14/120 (11%)
Query: 1 RAILTNPDVQLKTPVGDLFNNDYWGTPITSPNSHGSYRPLTVLTFRLN-YLACGLKPRSF 59
AI+ N D+Q +TP+GDL+++D+WG+ ++S SH SYRPLTVLTFR+N YL+ G P F
Sbjct: 48 EAIVNNKDLQAETPLGDLWHHDFWGSRLSSNTSHKSYRPLTVLTFRINYYLSGGFHPVGF 107
Query: 60 HLINNLLHSAITYLVYILSS-------YVLPNRR------ARLFASLIFAVHPIHTEAVS 106
H++N LLHS I+ L+ + S Y RR A L A+L+FAVHP+HTE V+
Sbjct: 108 HVVNILLHSGISVLMVDVFSVLFGGLQYTSKGRRLHLAPRASLLAALLFAVHPVHTECVA 167
>sp|Q7K4B6|TMTC3_DROME Transmembrane and TPR repeat-containing protein CG4050
OS=Drosophila melanogaster GN=CG4050 PE=2 SV=1
Length = 926
Score = 84.0 bits (206), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 53/125 (42%), Positives = 70/125 (56%), Gaps = 20/125 (16%)
Query: 2 AILTNPDVQLKTPVGDLFNNDYWGTPITSPNSHGSYRPLTVLTFRLNYLACGLKPRSFHL 61
AI N D++ TP+ ++F ND+WGTP+ SH SYRPLTVLTFR NYL L+P +HL
Sbjct: 63 AIRDNKDLRPHTPLINVFLNDFWGTPMRKEQSHKSYRPLTVLTFRFNYLLHALEPFGYHL 122
Query: 62 INNLLHSAITYLVYILSSYVLPNRRAR--------------------LFASLIFAVHPIH 101
+N LLH ++ L + +L A ASL+FAVHP+H
Sbjct: 123 VNLLLHLSVCLLWRRVCRLLLRQCAASGSNAISAPSSSSVSQLNTCAFVASLLFAVHPVH 182
Query: 102 TEAVS 106
TEAV+
Sbjct: 183 TEAVT 187
>sp|Q9VF81|TMTC4_DROME Transmembrane and TPR repeat-containing protein CG5038
OS=Drosophila melanogaster GN=CG5038 PE=1 SV=1
Length = 705
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 46/110 (41%), Positives = 61/110 (55%), Gaps = 5/110 (4%)
Query: 2 AILTNPDV-QLKTPVGDLFNNDYWGTPITSPNSHGSYRPLTVLTFRLNYLACGLKPRSFH 60
AI+ N DV L T +F +D+WG + S +SH S+RPLT L F Y GL
Sbjct: 44 AIVKNRDVNSLPTNWTAIFTHDFWGASLLSSDSHKSFRPLTTLMFHCEYALLGLSAAHMK 103
Query: 61 LINNLLHSAITYLVY--ILSSYV--LPNRRARLFASLIFAVHPIHTEAVS 106
+N LLH T L++ I S YV + R + ++ +FA HPIHTEAVS
Sbjct: 104 FLNLLLHCVNTLLMWRLIRSLYVPEVSTARWAILSAALFAAHPIHTEAVS 153
>sp|Q20144|TMTC1_CAEEL Transmembrane and TPR repeat-containing protein F38B6.6
OS=Caenorhabditis elegans GN=F38B6.6 PE=3 SV=2
Length = 690
Score = 68.9 bits (167), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 43/110 (39%), Positives = 64/110 (58%), Gaps = 3/110 (2%)
Query: 1 RAILTNPDVQLKTPVGDLFNNDYWGTPITSPNSHGSYRPLTVLTFRLNYLACGLKPRSFH 60
+I+ NP V K P+ +F+ D+WG I+S NSH SYRP+T TF LNY +H
Sbjct: 57 ESIVNNPIVNGKDPLLQIFSRDFWGRSISSSNSHKSYRPVTTFTFWLNYKLHETSTLGYH 116
Query: 61 LINNLLHSAITYLVYILS---SYVLPNRRARLFASLIFAVHPIHTEAVSD 107
++N + H+ T + Y L ++ AS++FAVHP+HTEAV++
Sbjct: 117 VVNIICHTVATLVFYKLGKQLEHIFDFFNIAFSASILFAVHPVHTEAVAN 166
>sp|Q86A90|SYWM_DICDI Tryptophan--tRNA ligase, mitochondrial OS=Dictyostelium discoideum
GN=wars2 PE=3 SV=1
Length = 377
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 25/41 (60%), Gaps = 3/41 (7%)
Query: 43 LTFRLNYLACGLKPRSFHLINNLL---HSAITYLVYILSSY 80
++ +NYLACG+ P L N + HS +T+++ ++S+
Sbjct: 106 ISVAINYLACGIDPEKVILFNQSMVPAHSELTWILNCITSF 146
>sp|Q9RVW0|RPOC_DEIRA DNA-directed RNA polymerase subunit beta' OS=Deinococcus
radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 /
LMG 4051 / NBRC 15346 / NCIMB 9279 / R1 / VKM B-1422)
GN=rpoC PE=3 SV=1
Length = 1546
Score = 30.4 bits (67), Expect = 3.2, Method: Composition-based stats.
Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 6/55 (10%)
Query: 3 ILTNPDVQLKTPVGDLFNNDYWGTPITSPNSHGSYRPLTVL------TFRLNYLA 51
I+ N L+ V L +N G+P+T+P S S R LT L FR N L
Sbjct: 583 IIRNEKRMLQEAVDALIDNGRRGSPVTNPGSDRSLRSLTDLLGGKQGRFRQNLLG 637
>sp|Q1J0P7|RPOC_DEIGD DNA-directed RNA polymerase subunit beta' OS=Deinococcus
geothermalis (strain DSM 11300) GN=rpoC PE=3 SV=1
Length = 1537
Score = 30.4 bits (67), Expect = 3.2, Method: Composition-based stats.
Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 6/55 (10%)
Query: 3 ILTNPDVQLKTPVGDLFNNDYWGTPITSPNSHGSYRPLTVL------TFRLNYLA 51
I+ N L+ V L +N G+P+T+P S S R LT L FR N L
Sbjct: 573 IIRNEKRMLQEAVDALIDNGRRGSPVTNPGSDRSLRSLTDLLGGKQGRFRQNLLG 627
>sp|Q08656|ATP8_NEUCR ATP synthase protein 8 OS=Neurospora crassa (strain ATCC 24698 /
74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=atp-8
PE=3 SV=1
Length = 54
Score = 29.3 bits (64), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 23/36 (63%), Gaps = 3/36 (8%)
Query: 59 FHLINNLLHS--AITYLVYILSSYVLPNRRARLFAS 92
F+ +N + + IT +VYILS Y+LP R RLF S
Sbjct: 7 FYFVNEITFTFVIITLMVYILSKYILP-RFVRLFLS 41
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.326 0.141 0.442
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48,153,526
Number of Sequences: 539616
Number of extensions: 1737348
Number of successful extensions: 4232
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 4201
Number of HSP's gapped (non-prelim): 19
length of query: 130
length of database: 191,569,459
effective HSP length: 96
effective length of query: 34
effective length of database: 139,766,323
effective search space: 4752054982
effective search space used: 4752054982
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)