Query psy10415
Match_columns 130
No_of_seqs 127 out of 430
Neff 6.0
Searched_HMMs 29240
Date Fri Aug 16 17:20:08 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10415.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/10415hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rce_A Oligosaccharide transfe 79.7 3.1 0.0001 37.1 5.9 90 37-127 80-170 (724)
2 1jdm_A Sarcolipin; helix, memb 10.0 2.2E+02 0.0076 14.9 2.2 19 61-79 9-27 (31)
3 1vk5_A Expressed protein; stru 7.4 1.1E+02 0.0037 21.9 0.4 17 97-113 111-127 (157)
4 2p7v_A Regulator of sigma D; R 5.6 2.7E+02 0.0091 20.0 1.7 19 106-124 21-39 (158)
5 1xqo_A 8-oxoguanine DNA glycos 4.8 2.3E+02 0.0078 22.0 0.9 18 96-113 211-228 (256)
6 1tr0_A Stable protein 1; plant 4.5 2.3E+02 0.0079 17.9 0.7 14 95-108 80-93 (108)
7 1q4r_A Protein AT3G17210; cent 4.4 2.5E+02 0.0087 17.9 0.8 14 95-108 80-93 (112)
8 1pfi_A Major coat protein of P 4.3 6.2E+02 0.021 14.3 3.5 21 60-80 25-45 (46)
9 3arc_M Photosystem II reaction 4.3 3.9E+02 0.013 14.6 1.4 23 86-108 5-27 (36)
10 1xg7_A Hypothetical protein; s 4.2 1.6E+02 0.0054 22.9 -0.4 18 96-113 211-229 (250)
No 1
>3rce_A Oligosaccharide transferase to N-glycosylate PROT; oligosaccharyltransferase, membrane protein, helical bundle, glycosylation, acceptor peptide, plasma membrane; HET: PPN; 3.40A {Campylobacter lari}
Probab=79.72 E-value=3.1 Score=37.07 Aligned_cols=90 Identities=7% Similarity=-0.091 Sum_probs=56.2
Q ss_pred cchHHhHHHHHHHHhcCCCCc-hHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhcccchhhhhHHhhhhHHH
Q psy10415 37 YRPLTVLTFRLNYLACGLKPR-SFHLINNLLHSAITYLVYILSSYVLPNRRARLFASLIFAVHPIHTEAVSDYHKTYLIQ 115 (130)
Q Consensus 37 yRPL~~ls~~l~~~l~G~~p~-~~h~~NlllH~~~~~Lv~~l~~~l~~~~~~a~laallFa~HPi~~EaV~~i~~R~~ll 115 (130)
+.|+-...-+.-+.++|.++. .--..-.++-.+.+..+|.+.+++.++ ..++++|++.++-|.+..=-.-=.-+.|.+
T Consensus 80 ~g~~~~~l~a~l~~i~g~sl~~v~~~lp~ifg~L~vi~~yll~~el~~~-~aGl~AAll~ai~P~~i~RS~aG~~D~e~l 158 (724)
T 3rce_A 80 FGSSLSTLTYWLYSILPFSFESIILYMSTFFASLIVVPIILIAREYKLT-TYGFIAALLGSIANSYYNRTMSGYYDTDML 158 (724)
T ss_dssp TTCHHHHHHHHHHHSCSSCHHHHHHHHHHHHGGGGHHHHHHHHHHTTCH-HHHHHHHHHHTTSHHHHHTSSTTCCSGGGG
T ss_pred CcchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc-hHHHHHHHHHHHHHHHHHHhccccccchhH
Confidence 433333334455667776643 333444555567778899999998764 689999999999998643211112356666
Q ss_pred HHHHHHHHHHhh
Q psy10415 116 GERCTLEDLYVC 127 (130)
Q Consensus 116 a~~f~l~~ll~~ 127 (130)
+.+|.+.++++.
T Consensus 159 ~i~~~ll~~~~~ 170 (724)
T 3rce_A 159 VLVLPMLILLTF 170 (724)
T ss_dssp TTHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 666666666543
No 2
>1jdm_A Sarcolipin; helix, membrane protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=10.02 E-value=2.2e+02 Score=14.91 Aligned_cols=19 Identities=16% Similarity=0.284 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy10415 61 LINNLLHSAITYLVYILSS 79 (130)
Q Consensus 61 ~~NlllH~~~~~Lv~~l~~ 79 (130)
.+|..+-+++..|.|.+.|
T Consensus 9 f~NFt~vLI~vlLi~llVr 27 (31)
T 1jdm_A 9 FLNFTIVLITVILMWLLVR 27 (31)
T ss_dssp HHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3577777777777777665
No 3
>1vk5_A Expressed protein; structural genomics, unknown function, protein structur initiative, center for eukaryotic structural genomics, CESG; HET: CPS; 1.60A {Arabidopsis thaliana} SCOP: a.220.1.1 PDB: 2q3t_A* 3gan_A*
Probab=7.44 E-value=1.1e+02 Score=21.91 Aligned_cols=17 Identities=24% Similarity=0.253 Sum_probs=13.7
Q ss_pred hcccchhhhhHHhhhhH
Q psy10415 97 VHPIHTEAVSDYHKTYL 113 (130)
Q Consensus 97 ~HPi~~EaV~~i~~R~~ 113 (130)
+||...||.-|+++--.
T Consensus 111 IhP~kAeatIW~vEE~H 127 (157)
T 1vk5_A 111 IHPTKAEATIWLVEEIH 127 (157)
T ss_dssp SCHHHHHHHHHHHHHHH
T ss_pred ccchhhhhHHHHHHHHH
Confidence 79999999999876543
No 4
>2p7v_A Regulator of sigma D; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli}
Probab=5.62 E-value=2.7e+02 Score=20.04 Aligned_cols=19 Identities=11% Similarity=-0.071 Sum_probs=15.5
Q ss_pred hHHhhhhHHHHHHHHHHHH
Q psy10415 106 SDYHKTYLIQGERCTLEDL 124 (130)
Q Consensus 106 ~~i~~R~~lla~~f~l~~l 124 (130)
.|+-.|++++..=|-|+|+
T Consensus 21 ~WL~~Rq~Llv~Yc~L~gl 39 (158)
T 2p7v_A 21 RWLHVRKHLLVAYYNLVGI 39 (158)
T ss_dssp HHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHhCC
Confidence 4899999999888877764
No 5
>1xqo_A 8-oxoguanine DNA glycosylase; helix-hairpin-helix, archaea, P.aerophilum, PA-AGOG native, DNA repair, lyase; 1.03A {Pyrobaculum aerophilum} SCOP: a.96.1.6 PDB: 1xqp_A*
Probab=4.78 E-value=2.3e+02 Score=22.05 Aligned_cols=18 Identities=11% Similarity=0.241 Sum_probs=16.1
Q ss_pred HhcccchhhhhHHhhhhH
Q psy10415 96 AVHPIHTEAVSDYHKTYL 113 (130)
Q Consensus 96 a~HPi~~EaV~~i~~R~~ 113 (130)
.+-|+|..|+.|+.+|+.
T Consensus 211 gIPplHLDSilWlig~~~ 228 (256)
T 1xqo_A 211 GIPPLHLDTLLWLAGRAV 228 (256)
T ss_dssp TCCHHHHHHHHHHHHHHH
T ss_pred CCCchhhhHHHHHhcccc
Confidence 689999999999999854
No 6
>1tr0_A Stable protein 1; plant protein; 1.80A {Populus tremula} SCOP: d.58.4.4 PDB: 1si9_A
Probab=4.52 E-value=2.3e+02 Score=17.92 Aligned_cols=14 Identities=0% Similarity=0.055 Sum_probs=9.5
Q ss_pred HHhcccchhhhhHH
Q psy10415 95 FAVHPIHTEAVSDY 108 (130)
Q Consensus 95 Fa~HPi~~EaV~~i 108 (130)
+..||.|.+.+..+
T Consensus 80 Y~~hP~H~~~~~~~ 93 (108)
T 1tr0_A 80 YLDSAALAAFAEGF 93 (108)
T ss_dssp HHTCHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHH
Confidence 45688888776544
No 7
>1q4r_A Protein AT3G17210; center for eukaryotic structural genom structural genomics, protein structure initiative, CESG, UN function; 1.90A {Arabidopsis thaliana} SCOP: d.58.4.4 PDB: 1q53_A 2q3p_A
Probab=4.44 E-value=2.5e+02 Score=17.93 Aligned_cols=14 Identities=29% Similarity=0.653 Sum_probs=10.5
Q ss_pred HHhcccchhhhhHH
Q psy10415 95 FAVHPIHTEAVSDY 108 (130)
Q Consensus 95 Fa~HPi~~EaV~~i 108 (130)
+..||.|.+.+..+
T Consensus 80 Y~~hP~H~~~~~~~ 93 (112)
T 1q4r_A 80 YIAHPAHVEFATIF 93 (112)
T ss_dssp HHHSHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHH
Confidence 55799998887654
No 8
>1pfi_A Major coat protein of PF1 virus; complex(viral coat protein/DNA), helical virus; HET: DC; 3.00A {Pseudomonas phage PF1} SCOP: h.1.4.1 PDB: 1ifn_A 1ifm_A* 1pjf_A 1ql1_A 1ql2_A 1zn5_A 2ifm_A 2ifn_A 2klv_A 2ksj_A 2xkm_A 3ifm_A 4ifm_A
Probab=4.32 E-value=6.2e+02 Score=14.26 Aligned_cols=21 Identities=19% Similarity=0.301 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy10415 60 HLINNLLHSAITYLVYILSSY 80 (130)
Q Consensus 60 h~~NlllH~~~~~Lv~~l~~~ 80 (130)
-++..+.-++.+.|+|.+.|+
T Consensus 25 ~IVGaLvil~VAGLiysm~RK 45 (46)
T 1pfi_A 25 YIVGALVILAVAGLIYSMLRK 45 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 455556666667777776664
No 9
>3arc_M Photosystem II reaction center protein M; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_M* 2axt_M* 3bz1_M* 3bz2_M* 3kzi_M* 3prq_M* 3prr_M* 3a0b_M* 3a0h_M*
Probab=4.27 E-value=3.9e+02 Score=14.57 Aligned_cols=23 Identities=17% Similarity=0.173 Sum_probs=15.4
Q ss_pred hHHHHHHHHHHhcccchhhhhHH
Q psy10415 86 RARLFASLIFAVHPIHTEAVSDY 108 (130)
Q Consensus 86 ~~a~laallFa~HPi~~EaV~~i 108 (130)
..++++.+||..=|..-=-..||
T Consensus 5 ~l~fiAt~Lfi~iPt~FLlilYv 27 (36)
T 3arc_M 5 QLGLIATALFVLVPSVFLIILYV 27 (36)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Confidence 35788888888877654444444
No 10
>1xg7_A Hypothetical protein; southeast collaboratory for structural genomics, secsg, hyperthermophIle, pyrococcus FU protein structure initiative; 1.88A {Pyrococcus furiosus} SCOP: a.96.1.6
Probab=4.21 E-value=1.6e+02 Score=22.86 Aligned_cols=18 Identities=17% Similarity=0.160 Sum_probs=16.1
Q ss_pred HhcccchhhhhH-HhhhhH
Q psy10415 96 AVHPIHTEAVSD-YHKTYL 113 (130)
Q Consensus 96 a~HPi~~EaV~~-i~~R~~ 113 (130)
.+=|+|..|+.| +.|+++
T Consensus 211 gIPpLHLDSilW~~lG~~~ 229 (250)
T 1xg7_A 211 GVPPLHIDSLIWPLLGNAD 229 (250)
T ss_dssp TCCHHHHHHHHHHHHTTCC
T ss_pred CCCcceehhHHHHHhcCcc
Confidence 799999999999 888875
Done!