RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy10415
         (130 letters)



>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 28.9 bits (64), Expect = 0.55
 Identities = 20/117 (17%), Positives = 38/117 (32%), Gaps = 42/117 (35%)

Query: 27  PITSPNSHGSYRPLTVLTFRLNYLACGLKPRSFHLINNLLHSAITY----L---VY---- 75
           P+ SP  H                   L P S  +  +L+ + +++    +   VY    
Sbjct: 422 PVASP-FHSHL----------------LVPASDLINKDLVKNNVSFNAKDIQIPVYDTFD 464

Query: 76  -----ILSSYVLPNRRARLFASLIFAVHPIHTEAVSDYHKTYLI---QGERCTLEDL 124
                +LS  +      R+    I    P+  E  + +  T+++    G    L  L
Sbjct: 465 GSDLRVLSGSISE----RI-VDCII-RLPVKWETTTQFKATHILDFGPGGASGLGVL 515


>3hv0_A Tryptophanyl-tRNA synthetase; tRNA-ligase, ATP-binding,
           aminoacyl-tRNA synthetase, ligase, nucleotide-binding;
           HET: TRP; 2.42A {Cryptosporidium parvum iowa II}
          Length = 393

 Score = 28.0 bits (62), Expect = 1.1
 Identities = 12/89 (13%), Positives = 25/89 (28%), Gaps = 1/89 (1%)

Query: 3   ILTNPDVQLKTPVGDLFNNDYWGTPITSPNSHGSYRPLTVLTFRLNYLACGLKP-RSFHL 61
            L    +Q    V  +         I   N               + +ACG  P  +F  
Sbjct: 96  FLFTKYLQDTFKVPLVIQLTDDEKFIFKSNLTLEETHNYAYENMKDIIACGFDPELTFIF 155

Query: 62  INNLLHSAITYLVYILSSYVLPNRRARLF 90
            N    + +   +  +   +  ++   +F
Sbjct: 156 TNLEYIAELYPDILRIEKKISCSQIKSIF 184


>2ip1_A Tryptophanyl-tRNA synthetase; rossmann fold, structural genomics,
           PSI-2, protein structure initiative; HET: PG4; 1.80A
           {Saccharomyces cerevisiae} PDB: 3kt0_A* 3kt3_A* 3kt6_A*
           3kt8_A*
          Length = 432

 Score = 26.9 bits (59), Expect = 2.4
 Identities = 6/82 (7%), Positives = 22/82 (26%)

Query: 3   ILTNPDVQLKTPVGDLFNNDYWGTPITSPNSHGSYRPLTVLTFRLNYLACGLKPRSFHLI 62
            +    +Q    V  +         +       +           + +A G  P++  + 
Sbjct: 124 FVFTKWLQEVFDVPLVIELTDDEKFLFKHKLTINDVKNFARENAKDIIAVGFDPKNTFIF 183

Query: 63  NNLLHSAITYLVYILSSYVLPN 84
           ++L +    +   ++       
Sbjct: 184 SDLQYMGGAFYETVVRVSRQIT 205


>2kjq_A DNAA-related protein; solution structure, NESG, structural
           genomics, PSI-2, protei structure initiative; NMR
           {Neisseria meningitidis serogroup B}
          Length = 149

 Score = 26.1 bits (58), Expect = 2.8
 Identities = 12/48 (25%), Positives = 20/48 (41%), Gaps = 9/48 (18%)

Query: 59  FHLINNLLHSAITYLVYILSSYVLPNR-------RARLFASLIFAVHP 99
           F + N   +S   +L+  L S   P +       R R+   L++ V P
Sbjct: 104 FSIFNRFRNSGKGFLL--LGSEYTPQQLVIREDLRTRMAYCLVYEVKP 149


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 26.0 bits (56), Expect = 5.6
 Identities = 23/147 (15%), Positives = 41/147 (27%), Gaps = 45/147 (30%)

Query: 1   RAILTNPDVQLKTPVGDLF---NNDYWGTPITSPNSHGSY------RPLTVLTFRLNYL- 50
           R+I+ + ++       DL     + Y+        SH  +       P  +  FR+ +L 
Sbjct: 447 RSIVDHYNIPKTFDSDDLIPPYLDQYF-------YSHIGHHLKNIEHPERMTLFRMVFLD 499

Query: 51  ---------ACGLKPRSFHLINNLLHSAITYLVYILSSYVLPNRRARLFASLIFAVHPIH 101
                           +   I N L     Y  YI  +                   P +
Sbjct: 500 FRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDN------------------DPKY 541

Query: 102 TEAVSDYHKTYLIQGERCTLEDLYVCL 128
              V+     +L + E   +   Y  L
Sbjct: 542 ERLVNAI-LDFLPKIEENLICSKYTDL 567


>3jxe_A Tryptophanyl-tRNA synthetase; adenosine triphosphate, rossmann
           fold, crystallography, X-RAY, P. horikoshii,
           aminoacyl-tRNA synthetase; HET: TYM; 3.00A {Pyrococcus
           horikoshii}
          Length = 392

 Score = 25.1 bits (55), Expect = 8.0
 Identities = 7/45 (15%), Positives = 17/45 (37%)

Query: 47  LNYLACGLKPRSFHLINNLLHSAITYLVYILSSYVLPNRRARLFA 91
           L+ +A G  P    +  N   + I  +   ++  +  +    +F 
Sbjct: 138 LDIIAVGFDPDKTFIFQNSEFTKIYEMAIPIAKKINFSMAKAVFG 182


>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics
           consortium, SGC, GDP, membrane, nucleotide-binding,
           nucleotide binding protein; HET: GDP; 1.82A {Homo
           sapiens}
          Length = 195

 Score = 24.9 bits (55), Expect = 8.0
 Identities = 6/33 (18%), Positives = 9/33 (27%)

Query: 90  FASLIFAVHPIHTEAVSDYHKTYLIQGERCTLE 122
           F  L              Y +  ++  E  TL 
Sbjct: 43  FGGLQGDSAHEPENPEDTYERRIMVDKEEVTLV 75


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.326    0.141    0.442 

Gapped
Lambda     K      H
   0.267   0.0608    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,963,781
Number of extensions: 101119
Number of successful extensions: 271
Number of sequences better than 10.0: 1
Number of HSP's gapped: 270
Number of HSP's successfully gapped: 11
Length of query: 130
Length of database: 6,701,793
Length adjustment: 83
Effective length of query: 47
Effective length of database: 4,384,350
Effective search space: 206064450
Effective search space used: 206064450
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 52 (24.1 bits)