RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy10415
         (130 letters)



>d2z1aa2 d.159.1.2 (A:28-329) 5'-nucleotidase (syn. UDP-sugar
           hydrolase), N-terminal domain {Thermus thermophilus
           [TaxId: 274]}
          Length = 302

 Score = 23.7 bits (50), Expect = 9.7
 Identities = 3/29 (10%), Positives = 8/29 (27%), Gaps = 2/29 (6%)

Query: 20  NNDYWGTPITSPNSHGSYRPLTVLTFRLN 48
           N +     +      G    + +L    +
Sbjct: 236 NPEGKDVLVVQAWEWGKV--VGLLEVTFD 262


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.326    0.141    0.442 

Gapped
Lambda     K      H
   0.267   0.0450    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 481,960
Number of extensions: 19492
Number of successful extensions: 36
Number of sequences better than 10.0: 1
Number of HSP's gapped: 36
Number of HSP's successfully gapped: 1
Length of query: 130
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 54
Effective length of database: 1,364,116
Effective search space: 73662264
Effective search space used: 73662264
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 48 (23.0 bits)