BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10417
(385 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3FIM|B Chain B, Crystal Structure Of Aryl-Alcohol-Oxidase From Pleurotus
Eryingii
Length = 566
Score = 127 bits (319), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 97/360 (26%), Positives = 177/360 (49%), Gaps = 47/360 (13%)
Query: 23 EYDFIIXXXXXXXXXXXHRLSEVPSWKVLLIEAG--DEDRIFTDLVLIS-HYYQFTPYNW 79
++D+++ RL+E P VL++EAG DE+ + + L++ + ++W
Sbjct: 2 DFDYVVVGAGNAGNVVAARLTEDPDVSVLVLEAGVSDENVLGAEAPLLAPGLVPNSIFDW 61
Query: 80 GFKTTPQKNACLGLPNNQCLWPQGKGVGGSTIINGNIFTRGFPNDFNEWESL-GNTGWSF 138
+ TT Q G +P+G+ +GGS+ ++ + RG DF+ + ++ G+ GW++
Sbjct: 62 NYTTTAQA----GYNGRSIAYPRGRMLGGSSSVHYMVMMRGSTEDFDRYAAVTGDEGWNW 117
Query: 139 DDVLKYFKKFERINIPELNSDTVYHNTNGLLNVEYSPYKSKLSDIFLKVGLFNSDTVYHN 198
D++ ++ +K E + P N HNT+G E+ P H
Sbjct: 118 DNIQQFVRKNEMVVPPADN-----HNTSG----EFIP-------------------AVHG 149
Query: 199 TNGLLNVEYSPYKSKLSDIFLKSSKELG---YTNIDYNNPNTKIGFSIVQSTIKNGRRMT 255
TNG +++ + + L D L +++E + N D +G S +++ NG+R +
Sbjct: 150 TNGSVSISLPGFPTPLDDRVLATTQEQSEEFFFNPDMGT-GHPLGISWSIASVGNGQRSS 208
Query: 256 ASKAYLKPIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVKNGHKR-----SVFARKEV 310
+S AYL+P R NL V+ N++V K++ + V+ + +V A+KEV
Sbjct: 209 SSTAYLRPAQSRPNLSVLINAQVTKLVNSGTTNGLPAFRCVEYAEQEGAPTTTVCAKKEV 268
Query: 311 IVSSGAFNSPKLLMLSGVGPREHLTELGI-PVVQDLRVGDNLMEHVAYSALTF-GINKTF 368
++S+G+ +P LL LSG+G L+ +GI +V + VG NL +H+ A F N+TF
Sbjct: 269 VLSAGSVGTPILLQLSGIGDENDLSSVGIDTIVNNPSVGRNLSDHLLLPAAFFVNSNQTF 328
>pdb|3NNE|A Chain A, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|B Chain B, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|C Chain C, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|D Chain D, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|E Chain E, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|F Chain F, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|G Chain G, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|H Chain H, Crystal Structure Of Choline Oxidase S101a Mutant
Length = 546
Score = 125 bits (313), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 91/340 (26%), Positives = 159/340 (46%), Gaps = 50/340 (14%)
Query: 23 EYDFIIXXXXXXXXXXXHRLSEVPSWKVLLIEAGDEDRIFTDLVLISHYYQF--TPYNWG 80
E+D+I+ RLSE P+ V L+EAG +DR +++ + + + + Y+W
Sbjct: 13 EFDYIVVGGGSAGAAVAARLSEDPAVSVALVEAGPDDRGVPEVLQLDRWMELLESGYDWD 72
Query: 81 FKTTPQKNACLGLPNNQCLWPQGKGVGGSTIINGNIFTRGFPNDFNEWES-LGNTGWSFD 139
+ PQ+N N+ + K +GG + N I D +EWE+ G TGW+ +
Sbjct: 73 YPIEPQENG-----NSFMRHARAKVMGGCSSHNACIAFWAPREDLDEWEAKYGATGWNAE 127
Query: 140 DVLKYFKKFERINIPELNSDTVYHNTNGLLNVEYSPYKSKLSDIFLKVGLFNSDTVYHNT 199
+K+ E N + P D +H
Sbjct: 128 AAWPLYKRLE-------------------TNEDAGP-----------------DAPHHGD 151
Query: 200 NGLLNVEYSPYKSKLSDIFLKSSKELGYTNIDYNNPNTKI-GFSIVQSTIK-NGRRMTAS 257
+G +++ P K L + ++ G +N T + G + Q + +G R ++S
Sbjct: 152 SGPVHLMNVPPKDPTGVALLDACEQAGIPRAKFNTGTTVVNGANFFQINRRADGTRSSSS 211
Query: 258 KAYLKPIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVKN--GHKRSVFARKEVIVSSG 315
+Y+ PI+++ N ++ R +++ D ++ GV++V + GH + AR EV++S+G
Sbjct: 212 VSYIHPIVEQENFTLLTGLRARQLVFD-ADRRCTGVDIVDSAFGHTHRLTARNEVVLSTG 270
Query: 316 AFNSPKLLMLSGVGPREHLTELGIPVVQDLR-VGDNLMEH 354
A ++PKLLMLSG+GP HL E GI V+ D VG++L +H
Sbjct: 271 AIDTPKLLMLSGIGPAAHLAEHGIEVLVDSPGVGEHLQDH 310
>pdb|2JBV|A Chain A, Crystal Structure Of Choline Oxidase Reveals Insights Into
The Catalytic Mechanism
pdb|2JBV|B Chain B, Crystal Structure Of Choline Oxidase Reveals Insights Into
The Catalytic Mechanism
Length = 546
Score = 124 bits (312), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 91/340 (26%), Positives = 159/340 (46%), Gaps = 50/340 (14%)
Query: 23 EYDFIIXXXXXXXXXXXHRLSEVPSWKVLLIEAGDEDRIFTDLVLISHYYQF--TPYNWG 80
E+D+I+ RLSE P+ V L+EAG +DR +++ + + + + Y+W
Sbjct: 13 EFDYIVVGGGSAGAAVAARLSEDPAVSVALVEAGPDDRGVPEVLQLDRWMELLESGYDWD 72
Query: 81 FKTTPQKNACLGLPNNQCLWPQGKGVGGSTIINGNIFTRGFPNDFNEWES-LGNTGWSFD 139
+ PQ+N N+ + K +GG + N I D +EWE+ G TGW+ +
Sbjct: 73 YPIEPQENG-----NSFMRHARAKVMGGCSSHNSCIAFWAPREDLDEWEAKYGATGWNAE 127
Query: 140 DVLKYFKKFERINIPELNSDTVYHNTNGLLNVEYSPYKSKLSDIFLKVGLFNSDTVYHNT 199
+K+ E N + P D +H
Sbjct: 128 AAWPLYKRLE-------------------TNEDAGP-----------------DAPHHGD 151
Query: 200 NGLLNVEYSPYKSKLSDIFLKSSKELGYTNIDYNNPNTKI-GFSIVQSTIK-NGRRMTAS 257
+G +++ P K L + ++ G +N T + G + Q + +G R ++S
Sbjct: 152 SGPVHLMNVPPKDPTGVALLDACEQAGIPRAKFNTGTTVVNGANFFQINRRADGTRSSSS 211
Query: 258 KAYLKPIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVKN--GHKRSVFARKEVIVSSG 315
+Y+ PI+++ N ++ R +++ D ++ GV++V + GH + AR EV++S+G
Sbjct: 212 VSYIHPIVEQENFTLLTGLRARQLVFD-ADRRCTGVDIVDSAFGHTHRLTARNEVVLSTG 270
Query: 316 AFNSPKLLMLSGVGPREHLTELGIPVVQDLR-VGDNLMEH 354
A ++PKLLMLSG+GP HL E GI V+ D VG++L +H
Sbjct: 271 AIDTPKLLMLSGIGPAAHLAEHGIEVLVDSPGVGEHLQDH 310
>pdb|3LJP|A Chain A, Crystal Structure Of Choline Oxidase V464a Mutant
pdb|3LJP|B Chain B, Crystal Structure Of Choline Oxidase V464a Mutant
Length = 546
Score = 124 bits (312), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 91/340 (26%), Positives = 159/340 (46%), Gaps = 50/340 (14%)
Query: 23 EYDFIIXXXXXXXXXXXHRLSEVPSWKVLLIEAGDEDRIFTDLVLISHYYQF--TPYNWG 80
E+D+I+ RLSE P+ V L+EAG +DR +++ + + + + Y+W
Sbjct: 13 EFDYIVVGGGSAGAAVAARLSEDPAVSVALVEAGPDDRGVPEVLQLDRWMELLESGYDWD 72
Query: 81 FKTTPQKNACLGLPNNQCLWPQGKGVGGSTIINGNIFTRGFPNDFNEWES-LGNTGWSFD 139
+ PQ+N N+ + K +GG + N I D +EWE+ G TGW+ +
Sbjct: 73 YPIEPQENG-----NSFMRHARAKVMGGCSSHNSCIAFWAPREDLDEWEAKYGATGWNAE 127
Query: 140 DVLKYFKKFERINIPELNSDTVYHNTNGLLNVEYSPYKSKLSDIFLKVGLFNSDTVYHNT 199
+K+ E N + P D +H
Sbjct: 128 AAWPLYKRLE-------------------TNEDAGP-----------------DAPHHGD 151
Query: 200 NGLLNVEYSPYKSKLSDIFLKSSKELGYTNIDYNNPNTKI-GFSIVQSTIK-NGRRMTAS 257
+G +++ P K L + ++ G +N T + G + Q + +G R ++S
Sbjct: 152 SGPVHLMNVPPKDPTGVALLDACEQAGIPRAKFNTGTTVVNGANFFQINRRADGTRSSSS 211
Query: 258 KAYLKPIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVKN--GHKRSVFARKEVIVSSG 315
+Y+ PI+++ N ++ R +++ D ++ GV++V + GH + AR EV++S+G
Sbjct: 212 VSYIHPIVEQENFTLLTGLRARQLVFD-ADRRCTGVDIVDSAFGHTHRLTARNEVVLSTG 270
Query: 316 AFNSPKLLMLSGVGPREHLTELGIPVVQDLR-VGDNLMEH 354
A ++PKLLMLSG+GP HL E GI V+ D VG++L +H
Sbjct: 271 AIDTPKLLMLSGIGPAAHLAEHGIEVLVDSPGVGEHLQDH 310
>pdb|3T37|A Chain A, Crystal Structure Of Pyridoxine 4-Oxidase From Mesorbium
Loti
Length = 526
Score = 112 bits (279), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 93/336 (27%), Positives = 156/336 (46%), Gaps = 50/336 (14%)
Query: 25 DFIIXXXXXXXXXXXHRLSEVPSWKVLLIEAGDEDRIFTDLVLISHY--YQFTPYNWGFK 82
D +I RLSE P +VLLIEAG+E D+ + + Q Y+W ++
Sbjct: 19 DIVIVGGGSAGSLLAARLSEDPDSRVLLIEAGEEP-TDPDIWNPAAWPALQGRSYDWDYR 77
Query: 83 TTPQKNACLGLPNNQCLWPQGKGVGGSTIINGNIFTRGFPNDFNEW-ESLGNTGWSFDDV 141
T Q G W +G+ +GGS+ ++ + RG P+DF W ++ G+ W +D++
Sbjct: 78 TEAQA----GTAGRAHHWARGRLIGGSSCLHAMGYMRGHPSDFQAWVDASGDRRWGWDEL 133
Query: 142 LKYFKKFERINIPELNSDTVYHNTNGLLNVEYSPYKSKLSDIFLKVGLFNSDTVYHNTNG 201
L F+ I L D ++ L I L +D V
Sbjct: 134 LPV---FQAIEDHPLGGDGIHGKGGPL-------------PIHLP-----ADEV------ 166
Query: 202 LLNVEYSPYKSKLSDIFLKSSKELGYTNIDYNNPNTKIGFSIVQSTIKNGRRMTASKAYL 261
S L+ F+++ LG ++ +N IG + I++GRR+TA+ A+L
Sbjct: 167 ----------SPLARAFIEAGASLGLPRLEGHNSGEMIGVTPNSLNIRDGRRVTAADAWL 216
Query: 262 -KPIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVKNGHKRSVFARKEVIVSSGAFNSP 320
K + R NL ++ SRV ++ ++ Q + +E+V VFA ++++ +GA SP
Sbjct: 217 TKAVRGRKNLTILTGSRVRRLKLE--GNQVRSLEVVGRQGSAEVFA-DQIVLCAGALESP 273
Query: 321 KLLMLSGVGPREHLTELGIPVVQDL-RVGDNLMEHV 355
LLM SG+GP + L G+ + D+ +G NL +H+
Sbjct: 274 ALLMRSGIGPHDVLDAAGVGCLIDMPDIGRNLQDHL 309
>pdb|3Q9T|A Chain A, Crystal Structure Analysis Of Formate Oxidase
pdb|3Q9T|B Chain B, Crystal Structure Analysis Of Formate Oxidase
pdb|3Q9T|C Chain C, Crystal Structure Analysis Of Formate Oxidase
Length = 577
Score = 108 bits (270), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 97/339 (28%), Positives = 157/339 (46%), Gaps = 46/339 (13%)
Query: 24 YDFIIXXXXXXXXXXXHRLSEVPSWKVLLIEAG---DEDRIFTDLVLISHYYQFTPYNWG 80
+DF+I RL+E P+ VL++EAG ED + + + Y+W
Sbjct: 7 FDFVIVGGGTAGNTVAGRLAENPNVTVLIVEAGIGNPEDIPEITTPSSAMDLRNSKYDWA 66
Query: 81 FKTTPQKN---ACLGLPNNQCLWPQGKGVGGSTIINGNIFTRGFPNDFNEWESLGNTGWS 137
+KTT + + PN + GK +GGS+ +N + G F++WE G W+
Sbjct: 67 YKTTMVRRDDYERIEKPNTR-----GKTLGGSSSLNYFTWVPGHKATFDQWEEFGGKEWT 121
Query: 138 FDDVLKYFKKFERINIPELNSDTVYHNTNGLLNVEYSPYKSKLSDIFLKVGLFNSDTVYH 197
+D ++ Y +K YH+ L YSP K+G + H
Sbjct: 122 WDPLVPYLRK-----------SATYHDDPRL----YSPE-------LEKIGGGGPIPISH 159
Query: 198 NTNGLLNVEYSPYKSKLSDIFLKSSKELGYTNIDYNNPNTKIGFSIVQSTIKNGRRMTAS 257
L E +P++ L+ K+ K +G I+ G + TI G+R + S
Sbjct: 160 AE---LIDEMAPFRENLT----KAWKSMGQPLIENIYDGEMDGLTHCCDTIYRGQR-SGS 211
Query: 258 KAYLKPIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELV-KNGHKRSVFARKEVIVSSGA 316
++K ++ N+ ++ ++II+ + KGV +V G++ + FA +EVI+S G
Sbjct: 212 FLFVK---NKPNITIVPEVHSKRLIINEADRTCKGVTVVTAAGNELNFFADREVILSQGV 268
Query: 317 FNSPKLLMLSGVGPREHLTELGIPVVQDLR-VGDNLMEH 354
F +PKLLMLSG+GP L+ GI + D R VG NLM+H
Sbjct: 269 FETPKLLMLSGIGPTRELSRHGINTIVDSRHVGQNLMDH 307
>pdb|1CF3|A Chain A, Glucose Oxidase From Apergillus Niger
pdb|1GAL|A Chain A, Crystal Structure Of Glucose Oxidase From Aspergillus
Niger: Refined At 2.3 Angstroms Resolution
pdb|3QVP|A Chain A, Crystal Structure Of Glucose Oxidase For Space Group C2221
At 1.2 A Resolution
pdb|3QVR|A Chain A, Crystal Structure Of Glucose Oxidase For Space Group P3121
At 1.3 A Resolution
Length = 583
Score = 102 bits (254), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 96/351 (27%), Positives = 154/351 (43%), Gaps = 61/351 (17%)
Query: 25 DFIIXXXXXXXXXXXHRLSEVPSWKVLLIEAG----DEDRIFTDLVLISHYYQFTPYNWG 80
D+II RL+E P+ VL+IE+G D I DL + + +
Sbjct: 21 DYIIAGGGLTGLTTAARLTENPNISVLVIESGSYESDRGPIIEDLNAYGDIFG-SSVDHA 79
Query: 81 FKTTPQKNACLGLPNNQCLWPQGKGVGGSTIINGNIFTRGFPNDFNEWESL-GNTGWSFD 139
++T L N L G G+GGST++NG +TR + WE++ GN GW++D
Sbjct: 80 YETVE-----LATNNQTALIRSGNGLGGSTLVNGGTWTRPHKAQVDSWETVFGNEGWNWD 134
Query: 140 DVLKYFKKFERINIPELNSDTVYHNTNGLLNVEYSPYKSKLSDIFLKVGLFNSDTVYHNT 199
+V Y + ER P H FN+ H
Sbjct: 135 NVAAYSLQAERARAPNAKQIAAGH-------------------------YFNASC--HGV 167
Query: 200 NGLLNV-------EYSP----YKSKLSDIFLKSSKELGYTNIDYNNPNTKIGFSIVQSTI 248
NG ++ +YSP S + D + + K+ G +P+ G S+ +T+
Sbjct: 168 NGTVHAGPRDTGDDYSPIVKALMSAVEDRGVPTKKDFGC-----GDPH---GVSMFPNTL 219
Query: 249 KNGR-RMTASKAYLKPIIDRTNLHVIKNSRVVKIII--DPISKQAKGVEL-VKNGHKRSV 304
+ R A++ +L P R NL V+ V K+++ + + +A GVE G+ +V
Sbjct: 220 HEDQVRSDAAREWLLPNYQRPNLQVLTGQYVGKVLLSQNGTTPRAVGVEFGTHKGNTHNV 279
Query: 305 FARKEVIVSSGAFNSPKLLMLSGVGPREHLTELGIPVVQDLRVGDNLMEHV 355
+A+ EV++++G+ SP +L SG+G + L LGI V DL VG NL +
Sbjct: 280 YAKHEVLLAAGSAVSPTILEYSGIGMKSILEPLGIDTVVDLPVGLNLQDQT 330
>pdb|1GPE|A Chain A, Glucose Oxidase From Penicillium Amagasakiense
pdb|1GPE|B Chain B, Glucose Oxidase From Penicillium Amagasakiense
Length = 587
Score = 89.4 bits (220), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 95/341 (27%), Positives = 154/341 (45%), Gaps = 42/341 (12%)
Query: 24 YDFIIXXXXXXXXXXXHRLSEVPSWKVLLIEAGDEDRIFTDLVLISHYYQFTPYNWG--F 81
YD+II +L+E P KVL+IE G + D +I P +G F
Sbjct: 25 YDYIIAGGGLTGLTVAAKLTENPKIKVLVIEKGFYES--NDGAIIED-----PNAYGQIF 77
Query: 82 KTTPQKN-ACLGLPNNQCL-WPQGKGVGGSTIINGNIFTRGFPNDFNEWESL-GNTGWSF 138
TT +N + L NN+ GKG+GGST+ING+ +TR + WE + G GW++
Sbjct: 78 GTTVDQNYLTVPLINNRTNNIKAGKGLGGSTLINGDSWTRPDKVQIDSWEKVFGMEGWNW 137
Query: 139 DDVLKYFKKFERINIPELNSDTVYHNTNGLLNVEYSPYKSKLSDIFLKVGLFNSDTVYHN 198
D++ +Y KK E P H+ N + +S D
Sbjct: 138 DNMFEYMKKAEAARTPTAAQLAAGHSFNATCHGTNGTVQSGARD---------------- 181
Query: 199 TNGLLNVEYSPYKSKLSDIFLKSSKELGY-TNIDYNNPNTKIGFSIVQSTI-KNGRRMTA 256
NG +SP L + + LG D+ + + G S++ + + +N R+ A
Sbjct: 182 -NGQ---PWSPIMKAL----MNTVSALGVPVQQDFLCGHPR-GVSMIMNNLDENQVRVDA 232
Query: 257 SKAYLKPIIDRTNLHVIKNSRVVKIIIDPISK--QAKGVELVKN-GHKRSVFARKEVIVS 313
++A+L P R+NL ++ V K++ + QA GV N VFA+ EV+++
Sbjct: 233 ARAWLLPNYQRSNLEILTGQMVGKVLFKQTASGPQAVGVNFGTNKAVNFDVFAKHEVLLA 292
Query: 314 SGAFNSPKLLMLSGVGPREHLTELGIPVVQDLRVGDNLMEH 354
+G+ SP +L SG+G + L + + + DL VG N+ +
Sbjct: 293 AGSAISPLILEYSGIGLKSVLDQANVTQLLDLPVGINMQDQ 333
>pdb|3RED|A Chain A, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|B Chain B, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|C Chain C, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|D Chain D, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|E Chain E, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|F Chain F, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|G Chain G, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|H Chain H, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|I Chain I, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|J Chain J, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|K Chain K, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|L Chain L, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
Length = 521
Score = 58.9 bits (141), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 42/110 (38%), Positives = 54/110 (49%), Gaps = 6/110 (5%)
Query: 238 KIGFSIVQSTIKNGRRMTASKAYLKPIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELV- 296
+ G + ST N AS L D NL V ++ V KII S + ++
Sbjct: 178 EAGTRLTGSTFDNNGTRHASDELLNKG-DPNNLRVAVHASVEKIIFSSNSSGVTAIGVIY 236
Query: 297 --KNGHKRSVFARKE--VIVSSGAFNSPKLLMLSGVGPREHLTELGIPVV 342
NG F R E VIVS+G SP+LL+LSGVGP +L+ L IPVV
Sbjct: 237 KDSNGTPHQAFVRGEGEVIVSAGPIGSPQLLLLSGVGPESYLSSLNIPVV 286
>pdb|3GDN|A Chain A, Almond Hydroxynitrile Lyase In Complex With Benzaldehyde
pdb|3GDN|B Chain B, Almond Hydroxynitrile Lyase In Complex With Benzaldehyde
pdb|3GDP|A Chain A, Hydroxynitrile Lyase From Almond, Monoclinic Crystal Form
pdb|3GDP|B Chain B, Hydroxynitrile Lyase From Almond, Monoclinic Crystal Form
Length = 521
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 42/108 (38%), Positives = 53/108 (49%), Gaps = 7/108 (6%)
Query: 240 GFSIVQSTIKN-GRRMTASKAYLKPIIDRTNLHVIKNSRVVKIIID--PISKQAKGVELV 296
G I ST N G R A + K + NL V ++ V KII P +
Sbjct: 180 GTRITGSTFDNKGTRHAADELLNKG--NSNNLRVGVHASVEKIIFSNAPGLTATGVIYRD 237
Query: 297 KNGHKRSVFARK--EVIVSSGAFNSPKLLMLSGVGPREHLTELGIPVV 342
NG F R EVIVS+G +P+LL+LSGVGP +L+ L IPVV
Sbjct: 238 SNGTPHQAFVRSKGEVIVSAGTIGTPQLLLLSGVGPESYLSSLNIPVV 285
>pdb|1JU2|A Chain A, Crystal Structure Of The Hydroxynitrile Lyase From Almond
pdb|1JU2|B Chain B, Crystal Structure Of The Hydroxynitrile Lyase From Almond
Length = 536
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 42/108 (38%), Positives = 53/108 (49%), Gaps = 7/108 (6%)
Query: 240 GFSIVQSTIKN-GRRMTASKAYLKPIIDRTNLHVIKNSRVVKIIID--PISKQAKGVELV 296
G I ST N G R A + K + NL V ++ V KII P +
Sbjct: 180 GTRITGSTFDNKGTRHAADELLNKG--NSNNLRVGVHASVEKIIFSNAPGLTATGVIYRD 237
Query: 297 KNGHKRSVFARK--EVIVSSGAFNSPKLLMLSGVGPREHLTELGIPVV 342
NG F R EVIVS+G +P+LL+LSGVGP +L+ L IPVV
Sbjct: 238 SNGTPHQAFVRSKGEVIVSAGTIGTPQLLLLSGVGPESYLSSLNIPVV 285
>pdb|1NAA|A Chain A, Cellobiose Dehydrogenase Flavoprotein Fragment In Complex
With Cellobionolactam
pdb|1NAA|B Chain B, Cellobiose Dehydrogenase Flavoprotein Fragment In Complex
With Cellobionolactam
Length = 541
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 48/171 (28%), Positives = 74/171 (43%), Gaps = 27/171 (15%)
Query: 173 YSPYKSKLSDIFLKVGLFNSDTVYHNTNGLLNVEYSPYKSKLSDIFLKSSKELGYTNIDY 232
++PY SKLS T + +T+G +E S ++ + K GY
Sbjct: 120 HAPYTSKLSSRL-------PSTDHPSTDGQRYLEQS------FNVVSQLLKGQGYNQATI 166
Query: 233 N-NPNTK---IGFSIVQSTIKNGRRMTASKAYLKPIIDRTNLHVIKNSRVVKIIIDPISK 288
N NPN K G+S NG+R YL+ + R N N V ++ +
Sbjct: 167 NDNPNYKDHVFGYSAFD--FLNGKRAGPVATYLQTALARPNFTFKTNVMVSNVVRN--GS 222
Query: 289 QAKGVE-----LVKNGHKRSVFARKEVIVSSGAFNSPKLLMLSGVGPREHL 334
Q GV+ L NG V + VI+S+GAF + ++L SG+GP + +
Sbjct: 223 QILGVQTNDPTLGPNGFI-PVTPKGRVILSAGAFGTSRILFQSGIGPTDMI 272
>pdb|1KDG|A Chain A, Crystal Structure Of The Flavin Domain Of Cellobiose
Dehydrogenase
pdb|1KDG|B Chain B, Crystal Structure Of The Flavin Domain Of Cellobiose
Dehydrogenase
Length = 546
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 48/171 (28%), Positives = 74/171 (43%), Gaps = 27/171 (15%)
Query: 173 YSPYKSKLSDIFLKVGLFNSDTVYHNTNGLLNVEYSPYKSKLSDIFLKSSKELGYTNIDY 232
++PY SKLS T + +T+G +E S ++ + K GY
Sbjct: 125 HAPYTSKLSSRL-------PSTDHPSTDGQRYLEQS------FNVVSQLLKGQGYNQATI 171
Query: 233 N-NPNTK---IGFSIVQSTIKNGRRMTASKAYLKPIIDRTNLHVIKNSRVVKIIIDPISK 288
N NPN K G+S NG+R YL+ + R N N V ++ +
Sbjct: 172 NDNPNYKDHVFGYSAFD--FLNGKRAGPVATYLQTALARPNFTFKTNVMVSNVVRN--GS 227
Query: 289 QAKGVE-----LVKNGHKRSVFARKEVIVSSGAFNSPKLLMLSGVGPREHL 334
Q GV+ L NG V + VI+S+GAF + ++L SG+GP + +
Sbjct: 228 QILGVQTNDPTLGPNGFI-PVTPKGRVILSAGAFGTSRILFQSGIGPTDMI 277
>pdb|1WAC|A Chain A, Back-Priming Mode Of Phi6 Rna-Dependent Rna Polymerase
pdb|1WAC|B Chain B, Back-Priming Mode Of Phi6 Rna-Dependent Rna Polymerase
pdb|1WAC|C Chain C, Back-Priming Mode Of Phi6 Rna-Dependent Rna Polymerase
Length = 662
Score = 31.6 bits (70), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 42/85 (49%), Gaps = 10/85 (11%)
Query: 202 LLNVEYSPYKSKLSDIFLK-------SSKELGYTNI-DYNNPNTKIGFSIVQSTIKNGRR 253
LLN+ Y+P+ KL + LK + E G+T + D +NP+ ++G S Q
Sbjct: 344 LLNMGYAPWWVKLFETSLKLPVYVGAPAPEQGHTLLGDPSNPDLEVGLSSGQGATDLMGT 403
Query: 254 MTASKAYLKPIIDRTNLHVIKNSRV 278
+ S YL +D T H+ NSR+
Sbjct: 404 LLMSITYLVMQLDHTAPHL--NSRI 426
>pdb|1HI8|A Chain A, Rna Dependent Rna Polymerase From Dsrna Bacteriophage Phi6
pdb|1HI8|B Chain B, Rna Dependent Rna Polymerase From Dsrna Bacteriophage Phi6
Length = 664
Score = 31.6 bits (70), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 41/85 (48%), Gaps = 10/85 (11%)
Query: 202 LLNVEYSPYKSKLSDIFLK-------SSKELGYTNI-DYNNPNTKIGFSIVQSTIKNGRR 253
LLN Y+P+ KL + LK + E G+T + D +NP+ ++G S Q
Sbjct: 344 LLNXGYAPWWVKLFETSLKLPVYVGAPAPEQGHTLLGDPSNPDLEVGLSSGQGATDLXGT 403
Query: 254 MTASKAYLKPIIDRTNLHVIKNSRV 278
+ S YL +D T H+ NSR+
Sbjct: 404 LLXSITYLVXQLDHTAPHL--NSRI 426
>pdb|4A8F|A Chain A, Non-Catalytic Ions Direct The Rna-Dependent Rna Polymerase
Of Bacterial Dsrna Virus Phi6 From De Novo Initiation To
Elongation
pdb|4A8F|B Chain B, Non-Catalytic Ions Direct The Rna-Dependent Rna Polymerase
Of Bacterial Dsrna Virus Phi6 From De Novo Initiation To
Elongation
pdb|4A8F|C Chain C, Non-Catalytic Ions Direct The Rna-Dependent Rna Polymerase
Of Bacterial Dsrna Virus Phi6 From De Novo Initiation To
Elongation
pdb|4A8K|A Chain A, Non-Catalytic Ions Direct The Rna-Dependent Rna Polymerase
Of Bacterial Dsrna Virus Phi6 From De Novo Initiation To
Elongation
pdb|4A8K|B Chain B, Non-Catalytic Ions Direct The Rna-Dependent Rna Polymerase
Of Bacterial Dsrna Virus Phi6 From De Novo Initiation To
Elongation
pdb|4A8K|C Chain C, Non-Catalytic Ions Direct The Rna-Dependent Rna Polymerase
Of Bacterial Dsrna Virus Phi6 From De Novo Initiation To
Elongation
pdb|4A8M|P Chain P, Non-Catalytic Ions Direct The Rna-Dependent Rna Polymerase
Of Bacterial Dsrna Virus Phi6 From De Novo Initiation To
Elongation
pdb|4A8M|Q Chain Q, Non-Catalytic Ions Direct The Rna-Dependent Rna Polymerase
Of Bacterial Dsrna Virus Phi6 From De Novo Initiation To
Elongation
pdb|4A8M|R Chain R, Non-Catalytic Ions Direct The Rna-Dependent Rna Polymerase
Of Bacterial Dsrna Virus Phi6 From De Novo Initiation To
Elongation
Length = 665
Score = 31.6 bits (70), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 42/85 (49%), Gaps = 10/85 (11%)
Query: 202 LLNVEYSPYKSKLSDIFLK-------SSKELGYTNI-DYNNPNTKIGFSIVQSTIKNGRR 253
LLN+ Y+P+ KL + LK + E G+T + D +NP+ ++G S Q
Sbjct: 345 LLNMGYAPWWVKLFETSLKLPVYVGAPAPEQGHTLLGDPSNPDLEVGLSSGQGATDLMGT 404
Query: 254 MTASKAYLKPIIDRTNLHVIKNSRV 278
+ S YL +D T H+ NSR+
Sbjct: 405 LLMSITYLVMQLDHTAPHL--NSRI 427
>pdb|1HHS|A Chain A, Rna Dependent Rna Polymerase From Dsrna Bacteriophage Phi6
pdb|1HHS|B Chain B, Rna Dependent Rna Polymerase From Dsrna Bacteriophage Phi6
pdb|1HHS|C Chain C, Rna Dependent Rna Polymerase From Dsrna Bacteriophage Phi6
pdb|1HHT|P Chain P, Rna Dependent Rna Polymerase From Dsrna Bacteriophage Phi6
Plus Template
pdb|1HHT|Q Chain Q, Rna Dependent Rna Polymerase From Dsrna Bacteriophage Phi6
Plus Template
pdb|1HHT|R Chain R, Rna Dependent Rna Polymerase From Dsrna Bacteriophage Phi6
Plus Template
pdb|1HI0|P Chain P, Rna Dependent Rna Polymerase From Dsrna Bacteriophage Phi6
Plus Initiation Complex
pdb|1HI0|Q Chain Q, Rna Dependent Rna Polymerase From Dsrna Bacteriophage Phi6
Plus Initiation Complex
pdb|1HI0|R Chain R, Rna Dependent Rna Polymerase From Dsrna Bacteriophage Phi6
Plus Initiation Complex
pdb|1HI1|A Chain A, Rna Dependent Rna Polymerase From Dsrna Bacteriophage Phi6
Plus Bound Ntp
pdb|1HI1|B Chain B, Rna Dependent Rna Polymerase From Dsrna Bacteriophage Phi6
Plus Bound Ntp
pdb|1HI1|C Chain C, Rna Dependent Rna Polymerase From Dsrna Bacteriophage Phi6
Plus Bound Ntp
pdb|1UVI|A Chain A, The Structural Basis For Rna Specificity And Ca2
Inhibition Of An Rna-Dependent Rna Polymerase Phi6p2
With 6nt Rna
pdb|1UVI|B Chain B, The Structural Basis For Rna Specificity And Ca2
Inhibition Of An Rna-Dependent Rna Polymerase Phi6p2
With 6nt Rna
pdb|1UVI|C Chain C, The Structural Basis For Rna Specificity And Ca2
Inhibition Of An Rna-Dependent Rna Polymerase Phi6p2
With 6nt Rna
pdb|1UVJ|A Chain A, The Structural Basis For Rna Specificity And Ca2
Inhibition Of An Rna-Dependent Rna Polymerase Phi6p2
With 7nt Rna
pdb|1UVJ|B Chain B, The Structural Basis For Rna Specificity And Ca2
Inhibition Of An Rna-Dependent Rna Polymerase Phi6p2
With 7nt Rna
pdb|1UVJ|C Chain C, The Structural Basis For Rna Specificity And Ca2
Inhibition Of An Rna-Dependent Rna Polymerase Phi6p2
With 7nt Rna
pdb|1UVK|A Chain A, The Structural Basis For Rna Specificity And Ca2
Inhibition Of An Rna-Dependent Rna Polymerase Phi6p2
Dead-End Complex
pdb|1UVK|C Chain C, The Structural Basis For Rna Specificity And Ca2
Inhibition Of An Rna-Dependent Rna Polymerase Phi6p2
Dead-End Complex
pdb|1UVK|E Chain E, The Structural Basis For Rna Specificity And Ca2
Inhibition Of An Rna-Dependent Rna Polymerase Phi6p2
Dead-End Complex
pdb|1UVL|A Chain A, The Structural Basis For Rna Specificity And Ca2
Inhibition Of An Rna-Dependent Rna Polymerase Phi6p2
With 5nt Rna Conformation B
pdb|1UVL|C Chain C, The Structural Basis For Rna Specificity And Ca2
Inhibition Of An Rna-Dependent Rna Polymerase Phi6p2
With 5nt Rna Conformation B
pdb|1UVL|E Chain E, The Structural Basis For Rna Specificity And Ca2
Inhibition Of An Rna-Dependent Rna Polymerase Phi6p2
With 5nt Rna Conformation B
pdb|1UVM|A Chain A, The Structural Basis For Rna Specificity And Ca2
Inhibition Of An Rna-Dependent Rna Polymerase Phi6p2
With 5nt Rna Conformation A
pdb|1UVM|B Chain B, The Structural Basis For Rna Specificity And Ca2
Inhibition Of An Rna-Dependent Rna Polymerase Phi6p2
With 5nt Rna Conformation A
pdb|1UVM|C Chain C, The Structural Basis For Rna Specificity And Ca2
Inhibition Of An Rna-Dependent Rna Polymerase Phi6p2
With 5nt Rna Conformation A
pdb|1UVN|A Chain A, The Structural Basis For Rna Specificity And Ca2
Inhibition Of An Rna-Dependent Rna Polymerase Phi6p2
Ca2+ Inhibition Complex
pdb|1UVN|C Chain C, The Structural Basis For Rna Specificity And Ca2
Inhibition Of An Rna-Dependent Rna Polymerase Phi6p2
Ca2+ Inhibition Complex
pdb|1UVN|E Chain E, The Structural Basis For Rna Specificity And Ca2
Inhibition Of An Rna-Dependent Rna Polymerase Phi6p2
Ca2+ Inhibition Complex
pdb|4B02|A Chain A, The C-Terminal Priming Domain Is Strongly Associated With
The Main Body Of Bacteriophage Phi6 Rna-Dependent Rna
Polymerase
pdb|4B02|B Chain B, The C-Terminal Priming Domain Is Strongly Associated With
The Main Body Of Bacteriophage Phi6 Rna-Dependent Rna
Polymerase
pdb|4B02|C Chain C, The C-Terminal Priming Domain Is Strongly Associated With
The Main Body Of Bacteriophage Phi6 Rna-Dependent Rna
Polymerase
Length = 664
Score = 31.6 bits (70), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 42/85 (49%), Gaps = 10/85 (11%)
Query: 202 LLNVEYSPYKSKLSDIFLK-------SSKELGYTNI-DYNNPNTKIGFSIVQSTIKNGRR 253
LLN+ Y+P+ KL + LK + E G+T + D +NP+ ++G S Q
Sbjct: 344 LLNMGYAPWWVKLFETSLKLPVYVGAPAPEQGHTLLGDPSNPDLEVGLSSGQGATDLMGT 403
Query: 254 MTASKAYLKPIIDRTNLHVIKNSRV 278
+ S YL +D T H+ NSR+
Sbjct: 404 LLMSITYLVMQLDHTAPHL--NSRI 426
>pdb|4A8O|A Chain A, Non-Catalytic Ions Direct The Rna-Dependent Rna Polymerase
Of Bacterial Dsrna Virus Phi6 From De Novo Initiation To
Elongation
pdb|4A8O|B Chain B, Non-Catalytic Ions Direct The Rna-Dependent Rna Polymerase
Of Bacterial Dsrna Virus Phi6 From De Novo Initiation To
Elongation
pdb|4A8O|C Chain C, Non-Catalytic Ions Direct The Rna-Dependent Rna Polymerase
Of Bacterial Dsrna Virus Phi6 From De Novo Initiation To
Elongation
pdb|4A8Q|A Chain A, Non-Catalytic Ions Direct The Rna-Dependent Rna Polymerase
Of Bacterial Dsrna Virus Phi6 From De Novo Initiation To
Elongation
pdb|4A8Q|B Chain B, Non-Catalytic Ions Direct The Rna-Dependent Rna Polymerase
Of Bacterial Dsrna Virus Phi6 From De Novo Initiation To
Elongation
pdb|4A8Q|C Chain C, Non-Catalytic Ions Direct The Rna-Dependent Rna Polymerase
Of Bacterial Dsrna Virus Phi6 From De Novo Initiation To
Elongation
pdb|4A8S|A Chain A, Non-Catalytic Ions Direct The Rna-Dependent Rna Polymerase
Of Bacterial Dsrna Virus Phi6 From De Novo Initiation To
Elongation
pdb|4A8S|B Chain B, Non-Catalytic Ions Direct The Rna-Dependent Rna Polymerase
Of Bacterial Dsrna Virus Phi6 From De Novo Initiation To
Elongation
pdb|4A8S|C Chain C, Non-Catalytic Ions Direct The Rna-Dependent Rna Polymerase
Of Bacterial Dsrna Virus Phi6 From De Novo Initiation To
Elongation
pdb|4A8W|A Chain A, Non-Catalytic Ions Direct The Rna-Dependent Rna Polymerase
Of Bacterial Dsrna Virus Phi6 From De Novo Initiation To
Elongation
pdb|4A8W|B Chain B, Non-Catalytic Ions Direct The Rna-Dependent Rna Polymerase
Of Bacterial Dsrna Virus Phi6 From De Novo Initiation To
Elongation
pdb|4A8W|C Chain C, Non-Catalytic Ions Direct The Rna-Dependent Rna Polymerase
Of Bacterial Dsrna Virus Phi6 From De Novo Initiation To
Elongation
pdb|4A8Y|A Chain A, Non-Catalytic Ions Direct The Rna-Dependent Rna Polymerase
Of Bacterial Dsrna Virus Phi6 From De Novo Initiation To
Elongation
pdb|4A8Y|B Chain B, Non-Catalytic Ions Direct The Rna-Dependent Rna Polymerase
Of Bacterial Dsrna Virus Phi6 From De Novo Initiation To
Elongation
pdb|4A8Y|C Chain C, Non-Catalytic Ions Direct The Rna-Dependent Rna Polymerase
Of Bacterial Dsrna Virus Phi6 From De Novo Initiation To
Elongation
Length = 665
Score = 31.6 bits (70), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 42/85 (49%), Gaps = 10/85 (11%)
Query: 202 LLNVEYSPYKSKLSDIFLK-------SSKELGYTNI-DYNNPNTKIGFSIVQSTIKNGRR 253
LLN+ Y+P+ KL + LK + E G+T + D +NP+ ++G S Q
Sbjct: 345 LLNMGYAPWWVKLFETSLKLPVYVGAPAPEQGHTLLGDPSNPDLEVGLSSGQGATDLMGT 404
Query: 254 MTASKAYLKPIIDRTNLHVIKNSRV 278
+ S YL +D T H+ NSR+
Sbjct: 405 LLMSITYLVMQLDHTAPHL--NSRI 427
>pdb|2JL9|A Chain A, Structural Explanation For The Role Of Mn In The Activity
Of Phi6 Rna-Dependent Rna Polymerase
pdb|2JL9|B Chain B, Structural Explanation For The Role Of Mn In The Activity
Of Phi6 Rna-Dependent Rna Polymerase
pdb|2JL9|C Chain C, Structural Explanation For The Role Of Mn In The Activity
Of Phi6 Rna-Dependent Rna Polymerase
Length = 665
Score = 31.6 bits (70), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 42/85 (49%), Gaps = 10/85 (11%)
Query: 202 LLNVEYSPYKSKLSDIFLK-------SSKELGYTNI-DYNNPNTKIGFSIVQSTIKNGRR 253
LLN+ Y+P+ KL + LK + E G+T + D +NP+ ++G S Q
Sbjct: 345 LLNMGYAPWWVKLFETSLKLPVYVGAPAPEQGHTLLGDPSNPDLEVGLSSGQGATDLMGT 404
Query: 254 MTASKAYLKPIIDRTNLHVIKNSRV 278
+ S YL +D T H+ NSR+
Sbjct: 405 LLMSITYLVMQLDHTAPHL--NSRI 427
>pdb|2JLF|A Chain A, Structural Explanation For The Role Of Mn In The Activity
Of Phi6 Rna-dependent Rna Polymerase
pdb|2JLF|B Chain B, Structural Explanation For The Role Of Mn In The Activity
Of Phi6 Rna-dependent Rna Polymerase
pdb|2JLF|C Chain C, Structural Explanation For The Role Of Mn In The Activity
Of Phi6 Rna-dependent Rna Polymerase
pdb|2JLG|A Chain A, Structural Explanation For The Role Of Mn In The Activity
Of Phi6 Rna-Dependent Rna Polymerase
pdb|2JLG|B Chain B, Structural Explanation For The Role Of Mn In The Activity
Of Phi6 Rna-Dependent Rna Polymerase
pdb|2JLG|C Chain C, Structural Explanation For The Role Of Mn In The Activity
Of Phi6 Rna-Dependent Rna Polymerase
Length = 664
Score = 31.6 bits (70), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 42/85 (49%), Gaps = 10/85 (11%)
Query: 202 LLNVEYSPYKSKLSDIFLK-------SSKELGYTNI-DYNNPNTKIGFSIVQSTIKNGRR 253
LLN+ Y+P+ KL + LK + E G+T + D +NP+ ++G S Q
Sbjct: 344 LLNMGYAPWWVKLFETSLKLPVYVGAPAPEQGHTLLGDPSNPDLEVGLSSGQGATDLMGT 403
Query: 254 MTASKAYLKPIIDRTNLHVIKNSRV 278
+ S YL +D T H+ NSR+
Sbjct: 404 LLMSITYLVMQLDHTAPHL--NSRI 426
>pdb|2X6Q|A Chain A, Crystal Structure Of Trehalose Synthase Tret From P.
Horikoshi
pdb|2X6Q|B Chain B, Crystal Structure Of Trehalose Synthase Tret From P.
Horikoshi
pdb|2X6R|A Chain A, Crystal Structure Of Trehalose Synthase Tret From P.
Horikoshi Produced By Soaking In Trehalose
pdb|2X6R|B Chain B, Crystal Structure Of Trehalose Synthase Tret From P.
Horikoshi Produced By Soaking In Trehalose
Length = 416
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 36/166 (21%), Positives = 71/166 (42%), Gaps = 12/166 (7%)
Query: 156 LNSDTVYHNTNGLLNVEYSPYKSKLSDIFLKVGLFNSDTVYHNTNGLLNVEYSPYKSKLS 215
N +HN L E ++ +++L V NS + ++ + V + P + L
Sbjct: 85 FNVTKTFHN--ALQGNESLKLTEEMKELYLNVNRENSKFIDLSSFDYVLV-HDPQPAALI 141
Query: 216 DIFLKSSKELGYTNIDYNNPNTKIGFSIVQSTIKNGRRMTASKAYLKPIIDRTNLHVIKN 275
+ + K S L +ID ++PN + + + K R + Y++P +DR ++
Sbjct: 142 EFYEKKSPWLWRCHIDLSSPNREFWEFLRRFVEKYDRYIFHLPEYVQPELDRNKAVIMPP 201
Query: 276 SRVVKIIIDPISK---QAKGVELVKNGHKRSVFARKEVIVSSGAFN 318
S IDP+S+ + K E+++ + V K +I F+
Sbjct: 202 S------IDPLSEKNVELKQTEILRILERFDVDPEKPIITQVSRFD 241
>pdb|2XMP|A Chain A, Crystal Structure Of Trehalose Synthase Tret Mutant E326a
From P.Horishiki In Complex With Udp
pdb|2XMP|B Chain B, Crystal Structure Of Trehalose Synthase Tret Mutant E326a
From P.Horishiki In Complex With Udp
pdb|2XA2|A Chain A, Crystal Structure Of Trehalose Synthase Tret Mutant E326a
From P.Horikoshii In Complex With Udpg
pdb|2XA2|B Chain B, Crystal Structure Of Trehalose Synthase Tret Mutant E326a
From P.Horikoshii In Complex With Udpg
pdb|2XA9|A Chain A, Crystal Structure Of Trehalose Synthase Tret Mutant E326a
From P.Horikoshii In Complex With Udpg
pdb|2XA9|B Chain B, Crystal Structure Of Trehalose Synthase Tret Mutant E326a
From P.Horikoshii In Complex With Udpg
Length = 416
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 36/166 (21%), Positives = 71/166 (42%), Gaps = 12/166 (7%)
Query: 156 LNSDTVYHNTNGLLNVEYSPYKSKLSDIFLKVGLFNSDTVYHNTNGLLNVEYSPYKSKLS 215
N +HN L E ++ +++L V NS + ++ + V + P + L
Sbjct: 85 FNVTKTFHN--ALQGNESLKLTEEMKELYLNVNRENSKFIDLSSFDYVLV-HDPQPAALI 141
Query: 216 DIFLKSSKELGYTNIDYNNPNTKIGFSIVQSTIKNGRRMTASKAYLKPIIDRTNLHVIKN 275
+ + K S L +ID ++PN + + + K R + Y++P +DR ++
Sbjct: 142 EFYEKKSPWLWRCHIDLSSPNREFWEFLRRFVEKYDRYIFHLPEYVQPELDRNKAVIMPP 201
Query: 276 SRVVKIIIDPISK---QAKGVELVKNGHKRSVFARKEVIVSSGAFN 318
S IDP+S+ + K E+++ + V K +I F+
Sbjct: 202 S------IDPLSEKNVELKQTEILRILERFDVDPEKPIITQVSRFD 241
>pdb|2ORE|D Chain D, Binary Structure Of Escherichia Coli Dna Adenine
Methyltransferase And S-adenosylhomocysteine
pdb|2ORE|E Chain E, Binary Structure Of Escherichia Coli Dna Adenine
Methyltransferase And S-adenosylhomocysteine
pdb|2ORE|F Chain F, Binary Structure Of Escherichia Coli Dna Adenine
Methyltransferase And S-adenosylhomocysteine
Length = 298
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 50/120 (41%), Gaps = 6/120 (5%)
Query: 93 LPNNQCLWPQGKGVGGSTIINGNIFTRGFPNDFN-EWESLGNTGWSFDDVLKYFKKFERI 151
LP +CL G GS +N + F+R D N + SL N D +Y + +
Sbjct: 45 LPKGECLVEPFVG-AGSVFLNTD-FSRYILADINSDLISLYNIVKMRTD--EYVQAAREL 100
Query: 152 NIPELNSDTVYHNTNGLLNVEYSPYKSKLSDIFLKVGLFNSDTVYHNTNGLLNVEYSPYK 211
+PE N VY+ N P++ + ++L +N Y N G NV + YK
Sbjct: 101 FVPETNCAEVYYQFREEFNKSQDPFRRAVLFLYLNRYGYNGLCRY-NLRGEFNVPFGRYK 159
>pdb|2G1P|A Chain A, Structure Of E. Coli Dna Adenine Methyltransferase (Dam)
pdb|2G1P|B Chain B, Structure Of E. Coli Dna Adenine Methyltransferase (Dam)
Length = 278
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 50/120 (41%), Gaps = 6/120 (5%)
Query: 93 LPNNQCLWPQGKGVGGSTIINGNIFTRGFPNDFN-EWESLGNTGWSFDDVLKYFKKFERI 151
LP +CL G GS +N + F+R D N + SL N D +Y + +
Sbjct: 25 LPKGECLVEPFVG-AGSVFLNTD-FSRYILADINSDLISLYNIVKMRTD--EYVQAAREL 80
Query: 152 NIPELNSDTVYHNTNGLLNVEYSPYKSKLSDIFLKVGLFNSDTVYHNTNGLLNVEYSPYK 211
+PE N VY+ N P++ + ++L +N Y N G NV + YK
Sbjct: 81 FVPETNCAEVYYQFREEFNKSQDPFRRAVLFLYLNRYGYNGLCRY-NLRGEFNVPFGRYK 139
>pdb|3O0K|A Chain A, Crystal Structure Of AldoKETO REDUCTASE FROM BRUCELLA
MELITENSIS
pdb|3O0K|B Chain B, Crystal Structure Of AldoKETO REDUCTASE FROM BRUCELLA
MELITENSIS
pdb|3O0K|C Chain C, Crystal Structure Of AldoKETO REDUCTASE FROM BRUCELLA
MELITENSIS
pdb|3O0K|D Chain D, Crystal Structure Of AldoKETO REDUCTASE FROM BRUCELLA
MELITENSIS
Length = 283
Score = 29.3 bits (64), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 42/99 (42%), Gaps = 3/99 (3%)
Query: 123 NDFNEWESLGNTGW--SFDDVLKYFKKFERINIPELNSDTVYHNTNGLLNVEYSPYKSKL 180
ND N LG W S D+ + + + +++ T+Y N G+ ++
Sbjct: 32 NDGNHIPQLGYGVWQISNDEAVSAVSEALKAGYRHIDTATIYGNEEGVGKAINGSGIAR- 90
Query: 181 SDIFLKVGLFNSDTVYHNTNGLLNVEYSPYKSKLSDIFL 219
+DIFL L+NSD Y +T + + D++L
Sbjct: 91 ADIFLTTKLWNSDQGYESTLKAFDTSLKKLGTDYVDLYL 129
>pdb|1C4X|A Chain A, 2-Hydroxy-6-Oxo-6-Phenylhexa-2,4-Dienoate Hydrolase (Bphd)
From Rhodococcus Sp. Strain Rha1
Length = 285
Score = 28.9 bits (63), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Query: 290 AKGVELVKNGHKRSVFARKEVIVSSGAFNSPKLLMLSGVGPREHLTELGIPVVQDL 345
AK VE+++ A ++ +G SP +++L G GP H P++ DL
Sbjct: 2 AKTVEIIEKRFPSGTLASHALV--AGDPQSPAVVLLHGAGPGAHAASNWRPIIPDL 55
>pdb|2XA1|A Chain A, Crystal Structure Of Trehalose Synthase Tret From P.
Horikoshii (Seleno Derivative)
pdb|2XA1|B Chain B, Crystal Structure Of Trehalose Synthase Tret From P.
Horikoshii (Seleno Derivative)
Length = 416
Score = 28.5 bits (62), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 26/115 (22%), Positives = 50/115 (43%), Gaps = 9/115 (7%)
Query: 207 YSPYKSKLSDIFLKSSKELGYTNIDYNNPNTKIGFSIVQSTIKNGRRMTASKAYLKPIID 266
+ P + L + + K S L +ID ++PN + + + K R + Y++P +D
Sbjct: 133 HDPQPAALIEFYEKKSPWLWRCHIDLSSPNREFWEFLRRFVEKYDRYIFHLPEYVQPELD 192
Query: 267 RTNLHVIKNSRVVKIIIDPISK---QAKGVELVKNGHKRSVFARKEVIVSSGAFN 318
R + S IDP+S+ + K E+++ + V K +I F+
Sbjct: 193 RNKAVIXPPS------IDPLSEKNVELKQTEILRILERFDVDPEKPIITQVSRFD 241
>pdb|1Z7H|A Chain A, 2.3 Angstrom Crystal Structure Of Tetanus Neurotoxin Light
Chain
Length = 447
Score = 28.1 bits (61), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 35/74 (47%), Gaps = 12/74 (16%)
Query: 142 LKYFK-KFERINIPELNSDTVYHNTNGLLNVEYSPYKSKLSDIFLKVGLFNSDTVYHNTN 200
L YF + + IP L DT+Y++T G N+E KS+ ++V NTN
Sbjct: 377 LSYFSMNHDPVKIPNLLDDTIYNDTEG-FNIESKDLKSEYKGQNMRV----------NTN 425
Query: 201 GLLNVEYSPYKSKL 214
NV+ S SKL
Sbjct: 426 AFRNVDGSGLVSKL 439
>pdb|1YVG|A Chain A, Structural Analysis Of The Catalytic Domain Of Tetanus
Neurotoxin
Length = 468
Score = 28.1 bits (61), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 35/74 (47%), Gaps = 12/74 (16%)
Query: 142 LKYFK-KFERINIPELNSDTVYHNTNGLLNVEYSPYKSKLSDIFLKVGLFNSDTVYHNTN 200
L YF + + IP L DT+Y++T G N+E KS+ ++V NTN
Sbjct: 372 LSYFSMNHDPVKIPNLLDDTIYNDTEG-FNIESKDLKSEYKGQNMRV----------NTN 420
Query: 201 GLLNVEYSPYKSKL 214
NV+ S SKL
Sbjct: 421 AFRNVDGSGLVSKL 434
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.138 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,850,098
Number of Sequences: 62578
Number of extensions: 532467
Number of successful extensions: 1429
Number of sequences better than 100.0: 32
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 1394
Number of HSP's gapped (non-prelim): 48
length of query: 385
length of database: 14,973,337
effective HSP length: 101
effective length of query: 284
effective length of database: 8,652,959
effective search space: 2457440356
effective search space used: 2457440356
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)