BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10417
(385 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P18172|DHGL_DROPS Glucose dehydrogenase [acceptor] OS=Drosophila pseudoobscura
pseudoobscura GN=Gld PE=3 SV=4
Length = 625
Score = 234 bits (596), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 132/337 (39%), Positives = 190/337 (56%), Gaps = 38/337 (11%)
Query: 23 EYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDEDRIFTDLVLISHYYQFTPYNWGFK 82
EYDFI++G G G VVA RLSEVP WKVLLIEAG ++ + + + + + ++ +
Sbjct: 64 EYDFIVIGGGSAGSVVASRLSEVPQWKVLLIEAGGDEPVGAQIPSMFLNFIGSDIDYRYN 123
Query: 83 TTPQKNACLGLPNNQCLWPQGKGVGGSTIINGNIFTRGFPNDFNEWESLGNTGWSFDDVL 142
T P++ ACL +C WP+GK +GG++++NG ++ RG D+++W + GN GWS+ DVL
Sbjct: 124 TEPERMACLSSMEQRCYWPRGKVLGGTSVMNGMMYIRGNREDYDDWAAQGNPGWSYQDVL 183
Query: 143 KYFKKFERINIPELNSDTVYHNTNGLLNVEYSPYKSKLSDIFLKVGLFNSDTVYHNTNGL 202
+FKK E N+ T YH GLL V PY LS LK G
Sbjct: 184 PFFKKSED-NLELDAVGTEYHAKGGLLPVGKFPYNPPLSYALLKAG-------------- 228
Query: 203 LNVEYSPYKSKLSDIFLKSSKELGYTNIDYNNPNTKIGFSIVQSTIKNGRRMTASKAYLK 262
+E+G++ D N N+ GF I Q T +NG R ++++A+L+
Sbjct: 229 --------------------EEMGFSVQDLNGQNS-TGFMIAQMTARNGIRYSSARAFLR 267
Query: 263 PIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVKN-GHKRSVFARKEVIVSSGAFNSPK 321
P R NLH++ N+ V K++I P +K GVE+ G R + +KEVIVS GA NSP+
Sbjct: 268 PARMRNNLHILLNTTVTKVLIHPGTKNVVGVEVSDQFGSMRKILVKKEVIVSGGAVNSPQ 327
Query: 322 LLMLSGVGPREHLTELGIPVVQDLR-VGDNLMEHVAY 357
+L+LSGVGP+E L ++ + V L VG NL HVAY
Sbjct: 328 ILLLSGVGPKEDLQKVNVRPVHHLPGVGKNLHNHVAY 364
>sp|P18173|DHGL_DROME Glucose dehydrogenase [acceptor] OS=Drosophila melanogaster GN=Gld
PE=3 SV=3
Length = 625
Score = 229 bits (585), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 127/338 (37%), Positives = 193/338 (57%), Gaps = 40/338 (11%)
Query: 23 EYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDEDRIFTDLVLISHYYQFTPYNWGFK 82
EYDFI++G G G VVA RLSEVP WKVLLIEAG ++ + + + + + ++ +
Sbjct: 64 EYDFIVIGGGSAGSVVASRLSEVPQWKVLLIEAGGDEPVGAQIPSMFLNFIGSDIDYRYN 123
Query: 83 TTPQKNACLGLPNNQCLWPQGKGVGGSTIINGNIFTRGFPNDFNEWESLGNTGWSFDDVL 142
T P+ ACL +C WP+GK +GG++++NG ++ RG D+++W + GN GW+++DVL
Sbjct: 124 TEPEPMACLSSMEQRCYWPRGKVLGGTSVLNGMMYVRGNREDYDDWAADGNPGWAYNDVL 183
Query: 143 KYFKKFE-RINIPELNSDTVYHNTNGLLNVEYSPYKSKLSDIFLKVGLFNSDTVYHNTNG 201
+FKK E +++ E+ ++ YH GLL V PY LS LK G
Sbjct: 184 PFFKKSEDNLDLDEVGTE--YHAKGGLLPVGKFPYNPPLSYAILKAG------------- 228
Query: 202 LLNVEYSPYKSKLSDIFLKSSKELGYTNIDYNNPNTKIGFSIVQSTIKNGRRMTASKAYL 261
+ELG++ D N N+ GF I Q T +NG R ++++A+L
Sbjct: 229 ---------------------EELGFSVHDLNGQNS-TGFMIAQMTARNGIRYSSARAFL 266
Query: 262 KPIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVKN-GHKRSVFARKEVIVSSGAFNSP 320
+P R NLH++ N+ KI+I P +K GVE+ G R + +KEV++S+GA NSP
Sbjct: 267 RPARMRNNLHILLNTTATKILIHPHTKNVLGVEVSDQFGSTRKILVKKEVVLSAGAVNSP 326
Query: 321 KLLMLSGVGPREHLTELGIPVVQDLR-VGDNLMEHVAY 357
+L+LSGVGP++ L ++ + V +L VG NL HV Y
Sbjct: 327 HILLLSGVGPKDELQQVNVRTVHNLPGVGKNLHNHVTY 364
>sp|Q47944|SDH_GLUOY L-sorbose 1-dehydrogenase OS=Gluconobacter oxydans PE=3 SV=1
Length = 531
Score = 206 bits (524), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 127/335 (37%), Positives = 181/335 (54%), Gaps = 50/335 (14%)
Query: 24 YDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDEDRIFTDLVLISHYYQFT--PYNWGF 81
+D+I+VG G GCV+A RLSE PS +V LIEAG D + + + + T P+ W
Sbjct: 5 FDYIVVGGGSAGCVLAARLSENPSVRVCLIEAGRRD-THPLIHMPVGFAKMTTGPHTWDL 63
Query: 82 KTTPQKNACLGLPNNQCLWPQGKGVGGSTIINGNIFTRGFPNDFNEWESLGNTGWSFDDV 141
T PQK+A N Q + QG+ +GG + IN +FTRG P+DF+ W + G GWSF DV
Sbjct: 64 LTEPQKHAN----NRQIPYVQGRILGGGSSINAEVFTRGHPSDFDRWAAEGADGWSFRDV 119
Query: 142 LKYFKKFERINIPELNSDTVYHNTNGLLNVEYSPYKSKLSDIFLKVGLFNSDTVYHNTNG 201
KYF + E + V+ T +H TNG
Sbjct: 120 QKYFIRSE--------GNAVFSGT------------------------------WHGTNG 141
Query: 202 LLNVEYSPYKSKLSDIFLKSSKELGYT-NIDYNNPNTKIGFSIVQSTIKNGRRMTASKAY 260
L V + S F++S +E+G N D+N + + G I Q TI+N RR + + Y
Sbjct: 142 PLGVSNLAEPNPTSRAFVQSCQEMGLPYNPDFNGASQE-GAGIYQMTIRNNRRCSTAVGY 200
Query: 261 LKPIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVKNGHKRSVFARKEVIVSSGAFNSP 320
L+P + R NL V+ + V+KI+ + +A GV+ + NG + A +E++V++GA +P
Sbjct: 201 LRPALGRKNLTVVTRALVLKIVFN--GTRATGVQYIANGTLNTAEASQEIVVTAGAIGTP 258
Query: 321 KLLMLSGVGPREHLTELGIPVVQDLR-VGDNLMEH 354
KL+MLSGVGP HL E GIPVVQDL VG+NL +H
Sbjct: 259 KLMMLSGVGPAAHLRENGIPVVQDLPGVGENLQDH 293
>sp|Q8UH55|BETA_AGRT5 Choline dehydrogenase OS=Agrobacterium tumefaciens (strain C58 /
ATCC 33970) GN=betA PE=3 SV=2
Length = 549
Score = 197 bits (502), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 120/338 (35%), Positives = 185/338 (54%), Gaps = 48/338 (14%)
Query: 23 EYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDED-RIFTDL-VLISHYYQFTPYNWG 80
+ D++IVG+G G +A+RLSE + V++IEAG D F + ++ YNWG
Sbjct: 2 QADYVIVGSGSAGSAIAYRLSEDGRYSVIVIEAGGSDFGPFIQMPAALAWPMSMKRYNWG 61
Query: 81 FKTTPQKNACLGLPNNQCLWPQGKGVGGSTIINGNIFTRGFPNDFNEWESLGNTGWSFDD 140
+ + P+ N L N + P+GK +GGS+ ING ++ RG DFN WE LG GW++ D
Sbjct: 62 YLSEPEPN----LDNRRITAPRGKVIGGSSSINGLVYVRGHAEDFNRWEELGAQGWAYAD 117
Query: 141 VLKYFKKFERINIPELNSDTVYHNTNGLLNVEYSPYKSKLSDIFLKVGLFNSDTVYHNTN 200
VL YFK+ E + + + T+G L+V+ P S+ ++H
Sbjct: 118 VLPYFKRMEHSH----GGEEGWRGTDGPLHVQRGPV---------------SNPLFH--- 155
Query: 201 GLLNVEYSPYKSKLSDIFLKSSKELGYTNIDYNNPNTKIGFSIVQSTIKNGRRMTASKAY 260
F+++ + G+ D N + + GF +++ TI NGRR +A+ AY
Sbjct: 156 ----------------AFIQAGAQAGFELTDDYNGSKQEGFGLMEQTIHNGRRWSAANAY 199
Query: 261 LKPIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVKNGHKRSVFARKEVIVSSGAFNSP 320
LKP + R N+ ++ N K+II+ + +A GVE+ + G +V A +EVIVS+ +FNSP
Sbjct: 200 LKPALKRGNVTLV-NGFARKVIIE--NGRAVGVEIERRGRVETVKANREVIVSASSFNSP 256
Query: 321 KLLMLSGVGPREHLTELGIPVVQDLR-VGDNLMEHVAY 357
KLLMLSG+GP HL ++GI V D VG NL +H+ +
Sbjct: 257 KLLMLSGIGPAAHLKDMGIEVKADRPGVGANLQDHMEF 294
>sp|B5ZUG2|BETA_RHILW Choline dehydrogenase OS=Rhizobium leguminosarum bv. trifolii
(strain WSM2304) GN=betA PE=3 SV=1
Length = 549
Score = 196 bits (499), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 121/338 (35%), Positives = 182/338 (53%), Gaps = 48/338 (14%)
Query: 23 EYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDED-RIFTDL-VLISHYYQFTPYNWG 80
+ DF+I+G+G G +A+RLSE VL+IEAG D F + ++ YNWG
Sbjct: 2 QADFVIIGSGSAGSALAYRLSEDGKNSVLVIEAGGSDFGPFIQMPAALAWPMSMKRYNWG 61
Query: 81 FKTTPQKNACLGLPNNQCLWPQGKGVGGSTIINGNIFTRGFPNDFNEWESLGNTGWSFDD 140
+ + P+ N L N + P+GK +GGS+ ING ++ RG DFN WE LG GW++ D
Sbjct: 62 YLSEPEPN----LNNRRITAPRGKVIGGSSSINGMVYVRGHAEDFNRWEELGAGGWAYAD 117
Query: 141 VLKYFKKFERINIPELNSDTVYHNTNGLLNVEYSPYKSKLSDIFLKVGLFNSDTVYHNTN 200
VL YFK+ E H+ G + + T+
Sbjct: 118 VLPYFKRME-------------HSHGG-------------------------EEGWRGTD 139
Query: 201 GLLNVEYSPYKSKLSDIFLKSSKELGYTNIDYNNPNTKIGFSIVQSTIKNGRRMTASKAY 260
G L+V+ + + L F+++ K+ G+ + N + + GF +++ TI +GRR +A+ AY
Sbjct: 140 GPLHVQRGGFTNPLFRAFVEAGKQAGFETTEDYNGSKQEGFGLMEQTIFSGRRWSAANAY 199
Query: 261 LKPIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVKNGHKRSVFARKEVIVSSGAFNSP 320
LKP + R N+ +I +I+I+ +A GVE+ + G V A +EVIVS+ +FNSP
Sbjct: 200 LKPALKRKNVEIIYGF-AQRIVIE--DGRATGVEIERGGKIEVVKANREVIVSASSFNSP 256
Query: 321 KLLMLSGVGPREHLTELGIPVVQDLR-VGDNLMEHVAY 357
KLLMLSG+GP EHL E+GI V D VG NL +H+ +
Sbjct: 257 KLLMLSGIGPGEHLKEMGIEVKADRPGVGANLQDHMEF 294
>sp|Q1MJU4|BETA_RHIL3 Choline dehydrogenase OS=Rhizobium leguminosarum bv. viciae (strain
3841) GN=betA PE=3 SV=1
Length = 549
Score = 196 bits (498), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 118/338 (34%), Positives = 183/338 (54%), Gaps = 48/338 (14%)
Query: 23 EYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDED-RIFTDL-VLISHYYQFTPYNWG 80
+ DF+I+G+G G +A+RLSE V++IEAG D F + ++ YNWG
Sbjct: 2 QADFVIIGSGSAGSALAYRLSEGGKNSVIVIEAGGSDFGPFIQMPAALAWPMSMKRYNWG 61
Query: 81 FKTTPQKNACLGLPNNQCLWPQGKGVGGSTIINGNIFTRGFPNDFNEWESLGNTGWSFDD 140
+ + P+ N L N + P+GK +GGS+ ING ++ RG DFN WE LG +GW++ D
Sbjct: 62 YLSEPEAN----LNNRRITAPRGKVIGGSSSINGMVYVRGHAEDFNRWEELGASGWAYAD 117
Query: 141 VLKYFKKFERINIPELNSDTVYHNTNGLLNVEYSPYKSKLSDIFLKVGLFNSDTVYHNTN 200
VL YFK+ E H+ G + + T+
Sbjct: 118 VLPYFKRME-------------HSHGG-------------------------EEGWRGTD 139
Query: 201 GLLNVEYSPYKSKLSDIFLKSSKELGYTNIDYNNPNTKIGFSIVQSTIKNGRRMTASKAY 260
G L+V+ + + L F+++ K+ G+ + N + + GF +++ TI GRR +A+ AY
Sbjct: 140 GPLHVQRGGFTNPLFQAFVEAGKQAGFETTEDYNGSKQEGFGLMEQTIFGGRRWSAANAY 199
Query: 261 LKPIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVKNGHKRSVFARKEVIVSSGAFNSP 320
LKP + R N+ ++ +I+I+ +A GVE+ +NG V A +EVIVS+ +FNSP
Sbjct: 200 LKPALKRDNVKIVYG-LAQRIVIE--DGRATGVEIERNGRIEVVKANREVIVSASSFNSP 256
Query: 321 KLLMLSGVGPREHLTELGIPVVQDL-RVGDNLMEHVAY 357
KLLMLSG+GP +HL ++GI V D VG NL +H+ +
Sbjct: 257 KLLMLSGIGPGQHLQDMGIAVKADRPGVGANLQDHMEF 294
>sp|B3PTE0|BETA_RHIE6 Choline dehydrogenase OS=Rhizobium etli (strain CIAT 652) GN=betA
PE=3 SV=1
Length = 549
Score = 196 bits (498), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 120/338 (35%), Positives = 183/338 (54%), Gaps = 48/338 (14%)
Query: 23 EYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDED-RIFTDL-VLISHYYQFTPYNWG 80
+ DF+I+G+G G +A+RLSE VL+IEAG D F + ++ YNWG
Sbjct: 2 QADFVIIGSGSAGSALAYRLSEDGKNSVLVIEAGGSDFGPFIQMPAALAWPMSMKRYNWG 61
Query: 81 FKTTPQKNACLGLPNNQCLWPQGKGVGGSTIINGNIFTRGFPNDFNEWESLGNTGWSFDD 140
+ + P+ N L N + P+GK +GGS+ ING ++ RG DFN WE LG +GW++ D
Sbjct: 62 YLSEPEPN----LNNRRITAPRGKVIGGSSSINGMVYVRGHAEDFNRWEELGASGWAYAD 117
Query: 141 VLKYFKKFERINIPELNSDTVYHNTNGLLNVEYSPYKSKLSDIFLKVGLFNSDTVYHNTN 200
VL YFK+ E H+ G + + T+
Sbjct: 118 VLPYFKRME-------------HSHGG-------------------------EEGWRGTD 139
Query: 201 GLLNVEYSPYKSKLSDIFLKSSKELGYTNIDYNNPNTKIGFSIVQSTIKNGRRMTASKAY 260
G L+V+ + + L F+++ K+ G+ D N + + GF +++ TI +GRR +A+ AY
Sbjct: 140 GPLHVQRGGFTNPLFRAFIEAGKQAGFETTDDYNGSKQEGFGLMEQTIFSGRRWSAANAY 199
Query: 261 LKPIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVKNGHKRSVFARKEVIVSSGAFNSP 320
LKP + R N+ ++ KI+I+ +A GVE+ + G V A +EVIVS+ +FNSP
Sbjct: 200 LKPALKRKNVGMVYG-LARKIVIE--DGRATGVEIERGGKVEVVKATREVIVSASSFNSP 256
Query: 321 KLLMLSGVGPREHLTELGIPVVQDLR-VGDNLMEHVAY 357
KLLMLSG+GP +HL ++GI V D VG NL +H+ +
Sbjct: 257 KLLMLSGIGPGQHLNDMGIAVKADRPGVGANLQDHMEF 294
>sp|Q2KB43|BETA_RHIEC Choline dehydrogenase OS=Rhizobium etli (strain CFN 42 / ATCC
51251) GN=betA PE=3 SV=1
Length = 549
Score = 196 bits (497), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 119/338 (35%), Positives = 183/338 (54%), Gaps = 48/338 (14%)
Query: 23 EYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDED-RIFTDL-VLISHYYQFTPYNWG 80
+ DF+I+G+G G +A+RLSE VL+IEAG D F + ++ YNWG
Sbjct: 2 QADFVIIGSGSAGSALAYRLSEDGKNSVLVIEAGGSDFGPFIQMPAALAWPMSMKRYNWG 61
Query: 81 FKTTPQKNACLGLPNNQCLWPQGKGVGGSTIINGNIFTRGFPNDFNEWESLGNTGWSFDD 140
+ + P+ N L N + P+GK +GGS+ ING ++ RG DFN WE LG +GW++ D
Sbjct: 62 YLSEPEPN----LNNRRITAPRGKVIGGSSSINGMVYVRGHAEDFNRWEELGASGWAYAD 117
Query: 141 VLKYFKKFERINIPELNSDTVYHNTNGLLNVEYSPYKSKLSDIFLKVGLFNSDTVYHNTN 200
VL YFK+ E H+ G + + T+
Sbjct: 118 VLPYFKRME-------------HSHGG-------------------------EEGWRGTD 139
Query: 201 GLLNVEYSPYKSKLSDIFLKSSKELGYTNIDYNNPNTKIGFSIVQSTIKNGRRMTASKAY 260
G L+V+ + + L F+++ K+ G+ + N + + GF +++ TI GRR +A+ AY
Sbjct: 140 GPLHVQRGGFTNPLFRAFIEAGKQAGFETTEDYNGSKQEGFGLMEQTIFAGRRWSAANAY 199
Query: 261 LKPIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVKNGHKRSVFARKEVIVSSGAFNSP 320
LKP + R N+ ++ +I+I+ + +A GVE+ + G V A +EVIVS+ +FNSP
Sbjct: 200 LKPALKRDNVGIVYG-LARRIVIE--NGRATGVEIERGGRTEVVKANREVIVSASSFNSP 256
Query: 321 KLLMLSGVGPREHLTELGIPVVQDLR-VGDNLMEHVAY 357
KLLMLSG+GP +HL E+GI V D VG NL +H+ +
Sbjct: 257 KLLMLSGIGPAKHLKEMGIEVKADRPGVGANLQDHMEF 294
>sp|C3MIE4|BETA_RHISN Choline dehydrogenase OS=Rhizobium sp. (strain NGR234) GN=betA PE=3
SV=1
Length = 549
Score = 192 bits (489), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 119/338 (35%), Positives = 181/338 (53%), Gaps = 48/338 (14%)
Query: 23 EYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDED-RIFTDL-VLISHYYQFTPYNWG 80
+ D+II+G+G G +AHRLSE V+++E G D F + ++ YNWG
Sbjct: 2 QADYIIIGSGSAGSALAHRLSEDSRNSVIVLEFGGTDIGPFIQMPAALAWPMSMNRYNWG 61
Query: 81 FKTTPQKNACLGLPNNQCLWPQGKGVGGSTIINGNIFTRGFPNDFNEWESLGNTGWSFDD 140
+ + P+ + L N + P+GK +GGS+ ING ++ RG DF+ WE LG GW++ D
Sbjct: 62 YLSEPEPH----LNNRRITAPRGKVIGGSSSINGMVYVRGHAEDFDRWEQLGAKGWAYAD 117
Query: 141 VLKYFKKFERINIPELNSDTVYHNTNGLLNVEYSPYKSKLSDIFLKVGLFNSDTVYHNTN 200
VL YFK+ E H+ G + + T+
Sbjct: 118 VLPYFKRME-------------HSHGG-------------------------EDGWRGTD 139
Query: 201 GLLNVEYSPYKSKLSDIFLKSSKELGYTNIDYNNPNTKIGFSIVQSTIKNGRRMTASKAY 260
G L+V+ P K+ L F+++ K+ G+ D N + + GF +++ T GRR +A+ AY
Sbjct: 140 GPLHVQRGPVKNPLFHAFVEAGKQAGFEMTDDYNGSKQEGFGLMEQTTWRGRRWSAASAY 199
Query: 261 LKPIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVKNGHKRSVFARKEVIVSSGAFNSP 320
LKP + R N+ +I+ KI+I+ + +A GVE+ + G V A +EVIVS+ +FNSP
Sbjct: 200 LKPALKRPNVQLIR-CFARKIVIE--NGRATGVEIERGGRIEVVKANREVIVSASSFNSP 256
Query: 321 KLLMLSGVGPREHLTELGIPV-VQDLRVGDNLMEHVAY 357
KLLMLSG+GP HL +LGI V V VG NL +H+ +
Sbjct: 257 KLLMLSGIGPAAHLKDLGIDVKVDRPGVGQNLQDHMEF 294
>sp|P54223|BETA_RHIME Choline dehydrogenase OS=Rhizobium meliloti (strain 1021) GN=betA
PE=3 SV=2
Length = 549
Score = 191 bits (486), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 118/338 (34%), Positives = 181/338 (53%), Gaps = 48/338 (14%)
Query: 23 EYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDED-RIFTDL-VLISHYYQFTPYNWG 80
+ DF+I+G+G G +A+RLSE V+++E G D F + ++ YNWG
Sbjct: 2 QADFVIIGSGSAGSALAYRLSEDGRNSVIVLEFGGSDVGPFIQMPAALAWPMSMNRYNWG 61
Query: 81 FKTTPQKNACLGLPNNQCLWPQGKGVGGSTIINGNIFTRGFPNDFNEWESLGNTGWSFDD 140
+ + P+ N L N + P+GK +GGS+ ING ++ RG DFN WE LG GW++ D
Sbjct: 62 YLSEPEPN----LNNRRITAPRGKVIGGSSSINGMVYVRGHSEDFNRWEELGAQGWAYAD 117
Query: 141 VLKYFKKFERINIPELNSDTVYHNTNGLLNVEYSPYKSKLSDIFLKVGLFNSDTVYHNTN 200
VL Y+K+ E H+ G + + T+
Sbjct: 118 VLPYYKRME-------------HSHGG-------------------------EEGWRGTD 139
Query: 201 GLLNVEYSPYKSKLSDIFLKSSKELGYTNIDYNNPNTKIGFSIVQSTIKNGRRMTASKAY 260
G L+V+ P K+ L F+++ KE G+ + N + + GF +++ T GRR +A+ AY
Sbjct: 140 GPLHVQRGPVKNPLFHAFIEAGKEAGFEVTEDYNGSKQEGFGLMEQTTWRGRRWSAASAY 199
Query: 261 LKPIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVKNGHKRSVFARKEVIVSSGAFNSP 320
L+P + R N+ +I+ KI+I+ + +A GVE+ + G V A +EVIVS+ +FNSP
Sbjct: 200 LRPALKRPNVELIR-CFARKIVIE--NGRATGVEIERGGRIEVVKANREVIVSASSFNSP 256
Query: 321 KLLMLSGVGPREHLTELGIPV-VQDLRVGDNLMEHVAY 357
KLLMLSG+GP HL E+GI V V VG NL +H+ +
Sbjct: 257 KLLMLSGIGPAAHLKEMGIDVKVDRPGVGQNLQDHMEF 294
>sp|A6U6Y8|BETA_SINMW Choline dehydrogenase OS=Sinorhizobium medicae (strain WSM419)
GN=betA PE=3 SV=1
Length = 549
Score = 191 bits (484), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 115/338 (34%), Positives = 182/338 (53%), Gaps = 48/338 (14%)
Query: 23 EYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDED-RIFTDL-VLISHYYQFTPYNWG 80
+ DF+I+G+G G +A+RLSE + V+++E G D F + ++ YNWG
Sbjct: 2 QADFVIIGSGSAGSALAYRLSEDGANSVVVLEFGGSDVGPFIQMPAALAWPMSMNRYNWG 61
Query: 81 FKTTPQKNACLGLPNNQCLWPQGKGVGGSTIINGNIFTRGFPNDFNEWESLGNTGWSFDD 140
+ + P+ N L N + P+GK +GGS+ ING ++ RG DF+ WE LG GW++ D
Sbjct: 62 YLSEPEPN----LNNRRITAPRGKVIGGSSSINGMVYVRGHSEDFDRWEELGAKGWAYAD 117
Query: 141 VLKYFKKFERINIPELNSDTVYHNTNGLLNVEYSPYKSKLSDIFLKVGLFNSDTVYHNTN 200
VL Y+K+ E H+ G + + T+
Sbjct: 118 VLPYYKRME-------------HSHGG-------------------------EEGWRGTD 139
Query: 201 GLLNVEYSPYKSKLSDIFLKSSKELGYTNIDYNNPNTKIGFSIVQSTIKNGRRMTASKAY 260
G L+V+ P K+ L F+++ K+ G+ + N + + GF +++ T GRR +A+ AY
Sbjct: 140 GPLHVQRGPVKNPLFHAFIEAGKQAGFEVTEDYNGSKQEGFGLMEQTTWRGRRWSAASAY 199
Query: 261 LKPIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVKNGHKRSVFARKEVIVSSGAFNSP 320
L+P + R N+ +++ KI+I+ + +A GVE+ + G V A +EVIVS+ +FNSP
Sbjct: 200 LRPALKRPNVELVR-CFARKIVIE--NGRATGVEIERGGRTEVVRANREVIVSASSFNSP 256
Query: 321 KLLMLSGVGPREHLTELGIPVVQDLR-VGDNLMEHVAY 357
KLLMLSG+GP HL E+GI V D VG NL +H+ +
Sbjct: 257 KLLMLSGIGPAAHLQEMGIDVKADRPGVGQNLQDHMEF 294
>sp|Q8NE62|CHDH_HUMAN Choline dehydrogenase, mitochondrial OS=Homo sapiens GN=CHDH PE=2
SV=2
Length = 594
Score = 186 bits (471), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 115/345 (33%), Positives = 169/345 (48%), Gaps = 56/345 (16%)
Query: 22 DEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDED----------RIFTDLVLISHY 71
DEY +++VGAG GCV+A RL+E P+ +VLL+EAG +D +I L+++
Sbjct: 39 DEYSYVVVGAGSAGCVLAGRLTEDPAERVLLLEAGPKDVLAGSKRLSWKIHMPAALVANL 98
Query: 72 YQFTPYNWGFKTTPQKNACLGLPNNQCLWPQGKGVGGSTIINGNIFTRGFPNDFNEWESL 131
YNW + T Q+ GL WP+G+ GGS+ +N ++ RG D+ W+
Sbjct: 99 CDDR-YNWCYHTEVQR----GLDGRVLYWPRGRVWGGSSSLNAMVYVRGHAEDYERWQRQ 153
Query: 132 GNTGWSFDDVLKYFKKFERINIPELNSDTVYHNTNGLLNVEYSPYKSKLSDIFLKVGLFN 191
G GW + L YF+K + G
Sbjct: 154 GARGWDYAHCLPYFRKAQ--------------------------------------GHEL 175
Query: 192 SDTVYHNTNGLLNVEYSPYKSKLSDIFLKSSKELGYTNIDYNNPNTKIGFSIVQSTIKNG 251
+ Y +G L V L FL+++++ GY + N + GF + TI G
Sbjct: 176 GASRYRGADGPLRVSRGKTNHPLHCAFLEATQQAGYPLTEDMNGFQQEGFGWMDMTIHEG 235
Query: 252 RRMTASKAYLKPIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVKNGHKRSVFARKEVI 311
+R +A+ AYL P + RTNL + V +++ + +A GVE VKNG +A KEVI
Sbjct: 236 KRWSAACAYLHPALSRTNLKAEAETLVSRVLFE--GTRAVGVEYVKNGQSHRAYASKEVI 293
Query: 312 VSSGAFNSPKLLMLSGVGPREHLTELGIPVVQDLR-VGDNLMEHV 355
+S GA NSP+LLMLSG+G + L +LGIPVV L VG NL +H+
Sbjct: 294 LSGGAINSPQLLMLSGIGNADDLKKLGIPVVCHLPGVGQNLQDHL 338
>sp|Q8BJ64|CHDH_MOUSE Choline dehydrogenase, mitochondrial OS=Mus musculus GN=Chdh PE=1
SV=1
Length = 596
Score = 185 bits (470), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 113/345 (32%), Positives = 173/345 (50%), Gaps = 56/345 (16%)
Query: 22 DEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDED----------RIFTDLVLISHY 71
DEY F++VGAG GCV+A RL+E P+ +VLL+EAG +D +I L+S+
Sbjct: 41 DEYTFVVVGAGSAGCVLASRLTEDPNHRVLLLEAGPKDLLMGSKRLQWKIHMPAALVSNL 100
Query: 72 YQFTPYNWGFKTTPQKNACLGLPNNQCLWPQGKGVGGSTIINGNIFTRGFPNDFNEWESL 131
YNW + T PQ G+ + WP+G+ GGS+ +N ++ RG D+N W
Sbjct: 101 CD-DKYNWYYHTEPQP----GMDSRVLYWPRGRVWGGSSSLNAMVYIRGHAEDYNRWHRE 155
Query: 132 GNTGWSFDDVLKYFKKFERINIPELNSDTVYHNTNGLLNVEYSPYKSKLSDIFLKVGLFN 191
G GW + L YF+K +R EL ++
Sbjct: 156 GAEGWDYAHCLPYFRKAQRH---ELGAN-------------------------------- 180
Query: 192 SDTVYHNTNGLLNVEYSPYKSKLSDIFLKSSKELGYTNIDYNNPNTKIGFSIVQSTIKNG 251
+Y +G L+V L FL+++++ GY + N + GF + T+ G
Sbjct: 181 ---MYRGGDGPLHVSRGKTNHPLHQAFLQAARQAGYPFTEDMNGFQQEGFGWMDMTVHQG 237
Query: 252 RRMTASKAYLKPIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVKNGHKRSVFARKEVI 311
+R + + AYL P++ R NL + V +++ + +A GVE +K+G + + +EVI
Sbjct: 238 KRWSTACAYLHPVLSRPNLRAEVQTLVSRVLFE--GTRAVGVEYIKDGQRHKAYVSREVI 295
Query: 312 VSSGAFNSPKLLMLSGVGPREHLTELGIPVVQDLR-VGDNLMEHV 355
+S GA NSP+LLMLSGVG + L +L IPVV L VG NL +H+
Sbjct: 296 LSGGAINSPQLLMLSGVGNADDLRKLDIPVVCHLPGVGQNLQDHL 340
>sp|Q6UPE0|CHDH_RAT Choline dehydrogenase, mitochondrial OS=Rattus norvegicus GN=Chdh
PE=1 SV=1
Length = 599
Score = 184 bits (467), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 114/345 (33%), Positives = 172/345 (49%), Gaps = 56/345 (16%)
Query: 22 DEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDED----------RIFTDLVLISHY 71
DEY FI+VGAG GCV+A+RL+E P+ +VLL+EAG +D +I L+++
Sbjct: 44 DEYTFIVVGAGSAGCVLANRLTEDPNHRVLLLEAGPKDLLMGSKRLQWKIHMPAALVANL 103
Query: 72 YQFTPYNWGFKTTPQKNACLGLPNNQCLWPQGKGVGGSTIINGNIFTRGFPNDFNEWESL 131
YNW + T Q GL WP+G+ GGS+ +N ++ RG D+N W
Sbjct: 104 CD-DKYNWYYHTEAQP----GLDGRVLYWPRGRVWGGSSSLNAMVYIRGHAEDYNRWHRQ 158
Query: 132 GNTGWSFDDVLKYFKKFERINIPELNSDTVYHNTNGLLNVEYSPYKSKLSDIFLKVGLFN 191
G GW + L YF+K ++ EL ++
Sbjct: 159 GAEGWDYAHCLPYFRKAQKH---ELGAN-------------------------------- 183
Query: 192 SDTVYHNTNGLLNVEYSPYKSKLSDIFLKSSKELGYTNIDYNNPNTKIGFSIVQSTIKNG 251
+Y +G L+V L FL+++++ GY + N + GF + TI G
Sbjct: 184 ---MYRGGDGPLHVSRGKTNHPLHQAFLQAARQAGYPFTEDMNGFQQEGFGWMDMTIHQG 240
Query: 252 RRMTASKAYLKPIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVKNGHKRSVFARKEVI 311
+R + + AYL+P + R NL + V +++ + +A GVE +K+G + +EVI
Sbjct: 241 KRWSTASAYLRPALSRPNLRAEVQTLVSRVLFE--GTRAVGVEYIKDGQSHKAYVSREVI 298
Query: 312 VSSGAFNSPKLLMLSGVGPREHLTELGIPVVQDLR-VGDNLMEHV 355
+S GA NSP+LLMLSGVG + L +LGIPVV L VG NL +H+
Sbjct: 299 LSGGAINSPQLLMLSGVGNADDLKKLGIPVVCHLPGVGQNLQDHL 343
>sp|B9JBA2|BETA_AGRRK Choline dehydrogenase OS=Agrobacterium radiobacter (strain K84 /
ATCC BAA-868) GN=betA PE=3 SV=1
Length = 549
Score = 183 bits (464), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 115/338 (34%), Positives = 176/338 (52%), Gaps = 48/338 (14%)
Query: 23 EYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDED-RIFTDL-VLISHYYQFTPYNWG 80
+ DF+I+G+G G +A RLSE V+++E G D F + ++ YNWG
Sbjct: 2 QADFVIIGSGSAGSAMASRLSEDGKHTVIVLEFGGSDVGPFIQMPAALAWPMSMDRYNWG 61
Query: 81 FKTTPQKNACLGLPNNQCLWPQGKGVGGSTIINGNIFTRGFPNDFNEWESLGNTGWSFDD 140
+ + P+ L N + P+GK +GGS+ ING ++ RG DFN WE LG GW++ D
Sbjct: 62 YLSEPEPQ----LNNRRITAPRGKVIGGSSSINGMVYVRGHAEDFNRWEELGAQGWAYAD 117
Query: 141 VLKYFKKFERINIPELNSDTVYHNTNGLLNVEYSPYKSKLSDIFLKVGLFNSDTVYHNTN 200
VL YFK+ E H+ G + + T+
Sbjct: 118 VLPYFKRME-------------HSHGG-------------------------EEGWRGTD 139
Query: 201 GLLNVEYSPYKSKLSDIFLKSSKELGYTNIDYNNPNTKIGFSIVQSTIKNGRRMTASKAY 260
G L+V ++ L F+++ K+ G+ + N + GF +++ T GRR +A+ AY
Sbjct: 140 GPLHVRRGDARNPLFHAFIEAGKQAGFEATEDYNGGKQEGFGLMEQTTWMGRRWSAATAY 199
Query: 261 LKPIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVKNGHKRSVFARKEVIVSSGAFNSP 320
LKP + R N+ +I+ K++I+ + +A GVE+ + G V A EVIVS+ +FNSP
Sbjct: 200 LKPALKRPNVELIR-CFARKVVIE--NGRATGVEIERGGKIEIVKANSEVIVSASSFNSP 256
Query: 321 KLLMLSGVGPREHLTELGIPVVQDLR-VGDNLMEHVAY 357
KLLMLSG+GP +HL E+GI V D VG NL +H+ +
Sbjct: 257 KLLMLSGIGPGQHLQEMGIEVKIDRPGVGANLQDHMEF 294
>sp|P64264|Y1310_MYCBO Uncharacterized GMC-type oxidoreductase Mb1310 OS=Mycobacterium
bovis (strain ATCC BAA-935 / AF2122/97) GN=Mb1310 PE=3
SV=1
Length = 528
Score = 179 bits (455), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 110/347 (31%), Positives = 176/347 (50%), Gaps = 46/347 (13%)
Query: 23 EYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAG--DEDRIFTDLVLISHYYQFTPYNWG 80
+ D+++VG G G VVA RLS P+ V+ +EAG D++R S ++ + +W
Sbjct: 4 QSDYVVVGTGSAGAVVASRLSTDPATTVVALEAGPRDKNRFIGVPAAFSKLFR-SEIDWD 62
Query: 81 FKTTPQKNACLGLPNNQCLWPQGKGVGGSTIINGNIFTRGFPNDFNEWESLGNTGWSFDD 140
+ T PQ L + WP+GK +GGS+ +N ++ RGF +D++EW + WS+ D
Sbjct: 63 YLTEPQPE----LDGREIYWPRGKVLGGSSSMNAMMWVRGFASDYDEWAARAGPRWSYAD 118
Query: 141 VLKYFKKFERINIPELNSDTVYHNTNGLLNVEYSPYKSKLSDIFLKVGLFNSDTVYHNTN 200
VL YF++ E N +H +G D+
Sbjct: 119 VLGYFRRIE-------NVTAAWHFVSG------------------------DDS---GVT 144
Query: 201 GLLNVEYSPYKSKLSDIFLKSSKELGYTNIDYNNPNTKIGFSIVQSTIKNGRRMTASKAY 260
G L++ ++ +L +++E G+ N+P + GF T + G R + + AY
Sbjct: 145 GPLHISRQRSPRSVTAAWLAAARECGFAAARPNSPRPE-GFCETVVTQRRGARFSTADAY 203
Query: 261 LKPIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVKNGHKRSVFARKEVIVSSGAFNSP 320
LKP + R NL V+ + +++ID +A GVE +G R V+AR+EV++ +GA NSP
Sbjct: 204 LKPAMRRKNLRVLTGATATRVVID--GDRAVGVEYQSDGQTRIVYARREVVLCAGAVNSP 261
Query: 321 KLLMLSGVGPREHLTELGIPVV-QDLRVGDNLMEHVAYSALTFGINK 366
+LLMLSG+G R+HL E I V VG NL++H+ + L F + K
Sbjct: 262 QLLMLSGIGDRDHLAEHDIDTVYHAPEVGCNLLDHLV-TVLGFDVEK 307
>sp|P64263|Y1279_MYCTU Uncharacterized GMC-type oxidoreductase Rv1279/MT1316
OS=Mycobacterium tuberculosis GN=Rv1279 PE=3 SV=1
Length = 528
Score = 179 bits (455), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 110/347 (31%), Positives = 176/347 (50%), Gaps = 46/347 (13%)
Query: 23 EYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAG--DEDRIFTDLVLISHYYQFTPYNWG 80
+ D+++VG G G VVA RLS P+ V+ +EAG D++R S ++ + +W
Sbjct: 4 QSDYVVVGTGSAGAVVASRLSTDPATTVVALEAGPRDKNRFIGVPAAFSKLFR-SEIDWD 62
Query: 81 FKTTPQKNACLGLPNNQCLWPQGKGVGGSTIINGNIFTRGFPNDFNEWESLGNTGWSFDD 140
+ T PQ L + WP+GK +GGS+ +N ++ RGF +D++EW + WS+ D
Sbjct: 63 YLTEPQPE----LDGREIYWPRGKVLGGSSSMNAMMWVRGFASDYDEWAARAGPRWSYAD 118
Query: 141 VLKYFKKFERINIPELNSDTVYHNTNGLLNVEYSPYKSKLSDIFLKVGLFNSDTVYHNTN 200
VL YF++ E N +H +G D+
Sbjct: 119 VLGYFRRIE-------NVTAAWHFVSG------------------------DDS---GVT 144
Query: 201 GLLNVEYSPYKSKLSDIFLKSSKELGYTNIDYNNPNTKIGFSIVQSTIKNGRRMTASKAY 260
G L++ ++ +L +++E G+ N+P + GF T + G R + + AY
Sbjct: 145 GPLHISRQRSPRSVTAAWLAAARECGFAAARPNSPRPE-GFCETVVTQRRGARFSTADAY 203
Query: 261 LKPIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVKNGHKRSVFARKEVIVSSGAFNSP 320
LKP + R NL V+ + +++ID +A GVE +G R V+AR+EV++ +GA NSP
Sbjct: 204 LKPAMRRKNLRVLTGATATRVVID--GDRAVGVEYQSDGQTRIVYARREVVLCAGAVNSP 261
Query: 321 KLLMLSGVGPREHLTELGIPVV-QDLRVGDNLMEHVAYSALTFGINK 366
+LLMLSG+G R+HL E I V VG NL++H+ + L F + K
Sbjct: 262 QLLMLSGIGDRDHLAEHDIDTVYHAPEVGCNLLDHLV-TVLGFDVEK 307
>sp|Q985M5|BETA_RHILO Choline dehydrogenase OS=Rhizobium loti (strain MAFF303099) GN=betA
PE=3 SV=1
Length = 550
Score = 179 bits (455), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 115/336 (34%), Positives = 174/336 (51%), Gaps = 48/336 (14%)
Query: 23 EYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDED--RIFTDLVLISHYYQFTPYNWG 80
E DF+I+G+G G +A+RLSE V++IE G D + +S + Y+WG
Sbjct: 3 EADFVIIGSGSAGSAMAYRLSEDGKHSVIVIEFGGSDIGPLIQMPSALSIPLNMSLYDWG 62
Query: 81 FKTTPQKNACLGLPNNQCLWPQGKGVGGSTIINGNIFTRGFPNDFNEWESLGNTGWSFDD 140
F + P+ + L P+GK +GGS+ ING ++ RG DF+ W G TGW F D
Sbjct: 63 FASEPEPH----LGGRVLATPRGKVIGGSSSINGMVYVRGHARDFDHWAEEGATGWGFAD 118
Query: 141 VLKYFKKFERINIPELNSDTVYHNTNGLLNVEYSPYKSKLSDIFLKVGLFNSDTVYHNTN 200
VL YFK+ E N G + +
Sbjct: 119 VLPYFKRME-------------DNDGG-------------------------EDGWRGHG 140
Query: 201 GLLNVEYSPYKSKLSDIFLKSSKELGYTNIDYNNPNTKIGFSIVQSTIKNGRRMTASKAY 260
G L+V+ K+ L F+++ ++ G+ D N + + GF ++ TI GRR +A+ AY
Sbjct: 141 GPLHVQRGSRKNPLYGAFVEAGRQAGFELTDDYNGSKQEGFGPMEQTISGGRRWSAASAY 200
Query: 261 LKPIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVKNGHKRSVFARKEVIVSSGAFNSP 320
LKP + R N+ ++K ++II+ +++A GVE+ + + V AR+EVIV++ + NSP
Sbjct: 201 LKPALKRKNVSLVKGF-ARRVIIE--NQRAIGVEIEAHKQIQVVKARREVIVAASSINSP 257
Query: 321 KLLMLSGVGPREHLTELGIPVVQDLR-VGDNLMEHV 355
K+LMLSG+GP EHL E GI VV D VG NL +H+
Sbjct: 258 KILMLSGIGPAEHLRENGIAVVADRPGVGRNLQDHM 293
>sp|Q6LGH5|BETA_PHOPR Choline dehydrogenase OS=Photobacterium profundum GN=betA PE=3 SV=1
Length = 568
Score = 178 bits (451), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 116/335 (34%), Positives = 174/335 (51%), Gaps = 45/335 (13%)
Query: 24 YDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDEDR-IFTDL-VLISHYYQFTPYNWGF 81
YD+IIVGAG GCV+A RLS +LL+EAG DR IF + +S+ Y W F
Sbjct: 5 YDYIIVGAGSAGCVLADRLSASGEHYILLLEAGGSDRSIFIQMPTALSYPMNSEKYAWQF 64
Query: 82 KTTPQKNACLGLPNNQCLWPQGKGVGGSTIINGNIFTRGFPNDFNEWESLGNTGWSFDDV 141
+T P+ GL + P+G+ +GGS+ ING ++ RG D++EW G GWS+ +
Sbjct: 65 ETQPEA----GLDSRSLHCPRGRVLGGSSSINGMVYVRGHACDYDEWVEQGAEGWSYQEC 120
Query: 142 LKYFKKFERINIPELNSDTVYHNTNGLLNVEYSPYKSKLSDIFLKVGLFNSDTVYHNTNG 201
L YF++ E ++ + Y +G VG N +
Sbjct: 121 LPYFRRAESW----IHGEDTYRGGDG------------------PVGTCNGN-------- 150
Query: 202 LLNVEYSPYKSKLSDIFLKSSKELGYTNIDYNNPNTKIGFSIVQSTIKNGRRMTASKAYL 261
++E +P L F+ + ++ GY D N + GF + T+ G R + S AYL
Sbjct: 151 --DMELNP----LYQAFIDAGQQAGYPKTDDYNGYQQEGFGPMHMTVDKGIRASTSNAYL 204
Query: 262 KPIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVKNGHKRSVFARKEVIVSSGAFNSPK 321
+ + R+NL V K K++I +KQA GVE+ G +SV+A EV++S+G+ SP+
Sbjct: 205 RRAMKRSNLTVRKGVVTRKVLIK--NKQAIGVEIEVGGKVQSVYANTEVLLSAGSVGSPQ 262
Query: 322 LLMLSGVGPREHLTELGIPVVQDLR-VGDNLMEHV 355
LL LSG+GP+ L + GI V DL VG+NL +H+
Sbjct: 263 LLQLSGIGPKAVLEQAGIAVKHDLPGVGENLQDHL 297
>sp|B0CKN4|BETA_BRUSI Choline dehydrogenase OS=Brucella suis (strain ATCC 23445 / NCTC
10510) GN=betA PE=3 SV=1
Length = 549
Score = 178 bits (451), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 112/336 (33%), Positives = 171/336 (50%), Gaps = 48/336 (14%)
Query: 23 EYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAG--DEDRIFTDLVLISHYYQFTPYNWG 80
E DF+I+G+G G +A+RLSE + V++IE G D + +S Y+WG
Sbjct: 2 EADFVIIGSGSAGSAMAYRLSEDGRYSVIVIEYGVPDVGPLIQMPAALSFPMNMETYDWG 61
Query: 81 FKTTPQKNACLGLPNNQCLWPQGKGVGGSTIINGNIFTRGFPNDFNEWESLGNTGWSFDD 140
F + P+ + + + P+GK +GGS+ ING ++ RG DF+ W G GW++ D
Sbjct: 62 FSSEPEPH----IGGRSLVTPRGKVLGGSSSINGMVYVRGHACDFDHWSQSGARGWAYAD 117
Query: 141 VLKYFKKFERINIPELNSDTVYHNTNGLLNVEYSPYKSKLSDIFLKVGLFNSDTVYHNTN 200
VL YFK+ E N+ G + TN
Sbjct: 118 VLPYFKRME--------------NSQG------------------------GQEGWRGTN 139
Query: 201 GLLNVEYSPYKSKLSDIFLKSSKELGYTNIDYNNPNTKIGFSIVQSTIKNGRRMTASKAY 260
G L V+ + L F+++ + G+ D N + GF ++ TI NGRR +A+ AY
Sbjct: 140 GPLYVQRGKRDNPLFHAFVEAGHQAGFEVTDDYNGEKQEGFGPMEQTIHNGRRWSAANAY 199
Query: 261 LKPIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVKNGHKRSVFARKEVIVSSGAFNSP 320
LKP + R N+ ++K KI+++ K+A GVE+ ++ AR+EVI+++ + NSP
Sbjct: 200 LKPALKRPNVKLVKGF-ARKIVLE--GKRAVGVEIEAGRTFSTIRARREVIIAASSINSP 256
Query: 321 KLLMLSGVGPREHLTELGIPVVQDLR-VGDNLMEHV 355
KLLMLSG+GP HL E GI +V D VG NL +H+
Sbjct: 257 KLLMLSGIGPAAHLKEHGIDLVADRPGVGQNLQDHL 292
>sp|A5VPA6|BETA_BRUO2 Choline dehydrogenase OS=Brucella ovis (strain ATCC 25840 / 63/290
/ NCTC 10512) GN=betA PE=3 SV=1
Length = 549
Score = 178 bits (451), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 112/336 (33%), Positives = 171/336 (50%), Gaps = 48/336 (14%)
Query: 23 EYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAG--DEDRIFTDLVLISHYYQFTPYNWG 80
E DF+I+G+G G +A+RLSE + V++IE G D + +S Y+WG
Sbjct: 2 EADFVIIGSGSAGSAMAYRLSEDGRYSVIVIEYGVPDVGPLIQMPAALSFPMNMETYDWG 61
Query: 81 FKTTPQKNACLGLPNNQCLWPQGKGVGGSTIINGNIFTRGFPNDFNEWESLGNTGWSFDD 140
F + P+ + + + P+GK +GGS+ ING ++ RG DF+ W G GW++ D
Sbjct: 62 FSSEPEPH----IGGRSLVTPRGKVLGGSSSINGMVYVRGHACDFDHWSQSGARGWAYAD 117
Query: 141 VLKYFKKFERINIPELNSDTVYHNTNGLLNVEYSPYKSKLSDIFLKVGLFNSDTVYHNTN 200
VL YFK+ E N+ G + TN
Sbjct: 118 VLPYFKRME--------------NSQG------------------------GQEGWRGTN 139
Query: 201 GLLNVEYSPYKSKLSDIFLKSSKELGYTNIDYNNPNTKIGFSIVQSTIKNGRRMTASKAY 260
G L V+ + L F+++ + G+ D N + GF ++ TI NGRR +A+ AY
Sbjct: 140 GPLYVQRGKRDNPLFHAFVEAGHQAGFEVTDDYNGEKQEGFGPMEQTIHNGRRWSAANAY 199
Query: 261 LKPIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVKNGHKRSVFARKEVIVSSGAFNSP 320
LKP + R N+ ++K KI+++ K+A GVE+ ++ AR+EVI+++ + NSP
Sbjct: 200 LKPALKRPNVKLVKGF-ARKIVLE--GKRAVGVEIEAGRTFSTIRARREVIIAASSINSP 256
Query: 321 KLLMLSGVGPREHLTELGIPVVQDLR-VGDNLMEHV 355
KLLMLSG+GP HL E GI +V D VG NL +H+
Sbjct: 257 KLLMLSGIGPAAHLKEHGIDLVADRPGVGQNLQDHL 292
>sp|Q8YFY2|BETA_BRUME Choline dehydrogenase OS=Brucella melitensis biotype 1 (strain 16M
/ ATCC 23456 / NCTC 10094) GN=betA PE=3 SV=2
Length = 549
Score = 178 bits (451), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 112/336 (33%), Positives = 171/336 (50%), Gaps = 48/336 (14%)
Query: 23 EYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAG--DEDRIFTDLVLISHYYQFTPYNWG 80
E DF+I+G+G G +A+RLSE + V++IE G D + +S Y+WG
Sbjct: 2 EADFVIIGSGSAGSAMAYRLSEDGRYSVIVIEYGVPDVGPLIQMPAALSFPMNMETYDWG 61
Query: 81 FKTTPQKNACLGLPNNQCLWPQGKGVGGSTIINGNIFTRGFPNDFNEWESLGNTGWSFDD 140
F + P+ + + + P+GK +GGS+ ING ++ RG DF+ W G GW++ D
Sbjct: 62 FSSEPEPH----IRGRSLVTPRGKVLGGSSSINGMVYVRGHACDFDHWSQSGARGWAYAD 117
Query: 141 VLKYFKKFERINIPELNSDTVYHNTNGLLNVEYSPYKSKLSDIFLKVGLFNSDTVYHNTN 200
VL YFK+ E N+ G + TN
Sbjct: 118 VLPYFKRME--------------NSQG------------------------GQEGWRGTN 139
Query: 201 GLLNVEYSPYKSKLSDIFLKSSKELGYTNIDYNNPNTKIGFSIVQSTIKNGRRMTASKAY 260
G L V+ + L F+++ + G+ D N + GF ++ TI NGRR +A+ AY
Sbjct: 140 GPLYVQRGKRDNPLFHAFVEAGHQAGFEVTDDYNGEKQEGFGPMEQTIHNGRRWSAANAY 199
Query: 261 LKPIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVKNGHKRSVFARKEVIVSSGAFNSP 320
LKP + R N+ ++K KI+++ K+A GVE+ ++ AR+EVI+++ + NSP
Sbjct: 200 LKPALKRPNVKLVKGF-ARKIVLE--GKRAVGVEIEAGRTFSTIRARREVIIAASSINSP 256
Query: 321 KLLMLSGVGPREHLTELGIPVVQDLR-VGDNLMEHV 355
KLLMLSG+GP HL E GI +V D VG NL +H+
Sbjct: 257 KLLMLSGIGPAAHLKEHGIDLVADRPGVGQNLQDHL 292
>sp|A9M9H8|BETA_BRUC2 Choline dehydrogenase OS=Brucella canis (strain ATCC 23365 / NCTC
10854) GN=betA PE=3 SV=1
Length = 549
Score = 178 bits (451), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 112/336 (33%), Positives = 171/336 (50%), Gaps = 48/336 (14%)
Query: 23 EYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAG--DEDRIFTDLVLISHYYQFTPYNWG 80
E DF+I+G+G G +A+RLSE + V++IE G D + +S Y+WG
Sbjct: 2 EADFVIIGSGSAGSAMAYRLSEDGRYSVIVIEYGVPDVGPLIQMPAALSFPMNMETYDWG 61
Query: 81 FKTTPQKNACLGLPNNQCLWPQGKGVGGSTIINGNIFTRGFPNDFNEWESLGNTGWSFDD 140
F + P+ + + + P+GK +GGS+ ING ++ RG DF+ W G GW++ D
Sbjct: 62 FSSEPEPH----IGGRSLVTPRGKVLGGSSSINGMVYVRGHACDFDHWSQSGARGWAYAD 117
Query: 141 VLKYFKKFERINIPELNSDTVYHNTNGLLNVEYSPYKSKLSDIFLKVGLFNSDTVYHNTN 200
VL YFK+ E N+ G + TN
Sbjct: 118 VLPYFKRME--------------NSQG------------------------GQEGWRGTN 139
Query: 201 GLLNVEYSPYKSKLSDIFLKSSKELGYTNIDYNNPNTKIGFSIVQSTIKNGRRMTASKAY 260
G L V+ + L F+++ + G+ D N + GF ++ TI NGRR +A+ AY
Sbjct: 140 GPLYVQRGKRDNPLFHAFVEAGHQAGFEVADDYNGEKQEGFGPMEQTIHNGRRWSAANAY 199
Query: 261 LKPIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVKNGHKRSVFARKEVIVSSGAFNSP 320
LKP + R N+ ++K KI+++ K+A GVE+ ++ AR+EVI+++ + NSP
Sbjct: 200 LKPALKRPNVKLVKGF-ARKIVLE--GKRAVGVEIEAGRTFSTIRARREVIIAASSINSP 256
Query: 321 KLLMLSGVGPREHLTELGIPVVQDLR-VGDNLMEHV 355
KLLMLSG+GP HL E GI +V D VG NL +H+
Sbjct: 257 KLLMLSGIGPAAHLKEHGIDLVADRPGVGQNLQDHL 292
>sp|Q8G1Z8|BETA_BRUSU Choline dehydrogenase OS=Brucella suis biovar 1 (strain 1330)
GN=betA PE=3 SV=1
Length = 549
Score = 177 bits (450), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 112/336 (33%), Positives = 171/336 (50%), Gaps = 48/336 (14%)
Query: 23 EYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAG--DEDRIFTDLVLISHYYQFTPYNWG 80
E DF+I+G+G G +A+RLSE + V++IE G D + +S Y+WG
Sbjct: 2 EADFVIIGSGSAGSAMAYRLSENGRYSVIVIEYGVPDVGPLIQMPAALSFPMNMETYDWG 61
Query: 81 FKTTPQKNACLGLPNNQCLWPQGKGVGGSTIINGNIFTRGFPNDFNEWESLGNTGWSFDD 140
F + P+ + + + P+GK +GGS+ ING ++ RG DF+ W G GW++ D
Sbjct: 62 FSSEPEPH----IGGRSLVTPRGKVLGGSSSINGMVYVRGHACDFDHWSQSGARGWAYAD 117
Query: 141 VLKYFKKFERINIPELNSDTVYHNTNGLLNVEYSPYKSKLSDIFLKVGLFNSDTVYHNTN 200
VL YFK+ E N+ G + TN
Sbjct: 118 VLPYFKRME--------------NSQG------------------------GQEGWRGTN 139
Query: 201 GLLNVEYSPYKSKLSDIFLKSSKELGYTNIDYNNPNTKIGFSIVQSTIKNGRRMTASKAY 260
G L V+ + L F+++ + G+ D N + GF ++ TI NGRR +A+ AY
Sbjct: 140 GPLYVQRGKRDNPLFHAFVEAGHQAGFEVTDDYNGEKQEGFGPMEQTIHNGRRWSAANAY 199
Query: 261 LKPIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVKNGHKRSVFARKEVIVSSGAFNSP 320
LKP + R N+ ++K KI+++ K+A GVE+ ++ AR+EVI+++ + NSP
Sbjct: 200 LKPALKRPNVKLVKGF-ARKIVLE--GKRAVGVEIEAGRTFSTIRARREVIIAASSINSP 256
Query: 321 KLLMLSGVGPREHLTELGIPVVQDLR-VGDNLMEHV 355
KLLMLSG+GP HL E GI +V D VG NL +H+
Sbjct: 257 KLLMLSGIGPAAHLKEHGIDLVADRPGVGQNLQDHL 292
>sp|A6X2G7|BETA_OCHA4 Choline dehydrogenase OS=Ochrobactrum anthropi (strain ATCC 49188 /
DSM 6882 / NCTC 12168) GN=betA PE=3 SV=1
Length = 549
Score = 177 bits (448), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 111/336 (33%), Positives = 171/336 (50%), Gaps = 48/336 (14%)
Query: 23 EYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAG--DEDRIFTDLVLISHYYQFTPYNWG 80
E DF+I+G+G G +A+RLSE + V++IE G D + +S Y+WG
Sbjct: 2 EADFVIIGSGSAGSAMAYRLSEDGRYSVIVIEYGVPDVGPLIQMPAALSFPMNMETYDWG 61
Query: 81 FKTTPQKNACLGLPNNQCLWPQGKGVGGSTIINGNIFTRGFPNDFNEWESLGNTGWSFDD 140
F T P+ + + + P+GK +GGS+ ING ++ RG D++ W G GW++ D
Sbjct: 62 FSTEPEPH----IGGRSLVTPRGKVLGGSSSINGMVYVRGHARDYDHWSESGARGWAYAD 117
Query: 141 VLKYFKKFERINIPELNSDTVYHNTNGLLNVEYSPYKSKLSDIFLKVGLFNSDTVYHNTN 200
VL YFK+ E N++G + TN
Sbjct: 118 VLPYFKRME--------------NSSG------------------------GQEGWRGTN 139
Query: 201 GLLNVEYSPYKSKLSDIFLKSSKELGYTNIDYNNPNTKIGFSIVQSTIKNGRRMTASKAY 260
G L ++ + L F+++ E G+ + N + GF ++ TI NGRR +A+ AY
Sbjct: 140 GPLYIQRGKRDNPLFHAFVEAGHEAGFEVTEDYNGEKQEGFGPMEQTIHNGRRWSAANAY 199
Query: 261 LKPIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVKNGHKRSVFARKEVIVSSGAFNSP 320
LKP + R N+ ++K KI+++ K+A GVE+ ++ AR+EVI+++ + NSP
Sbjct: 200 LKPALKRPNVKLVKG-LARKIVLE--GKRAVGVEIEAGRSFSTIRARREVIIAASSINSP 256
Query: 321 KLLMLSGVGPREHLTELGIPVVQDLR-VGDNLMEHV 355
KLLMLSG+GP L E GI VV D VG NL +H+
Sbjct: 257 KLLMLSGIGPAAQLKEHGIEVVADRPGVGQNLQDHL 292
>sp|Q9WWW2|ALKJ_PSEPU Alcohol dehydrogenase [acceptor] OS=Pseudomonas putida GN=alkJ PE=3
SV=1
Length = 552
Score = 171 bits (433), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 124/375 (33%), Positives = 184/375 (49%), Gaps = 70/375 (18%)
Query: 24 YDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDED-----RIFTDLVLISHYYQFTPYN 78
YD+IIVGAG GCV+A+RLS PS +V L+EAG D + + L+S+ + N
Sbjct: 2 YDYIIVGAGSAGCVLANRLSADPSKRVCLLEAGPRDTNPLIHMPLGIALLSNSKKL---N 58
Query: 79 WGFKTTPQKNACLGLPNNQCLWPQGKGVGGSTIINGNIFTRGFPNDFNEWESLGNTGWSF 138
W F+T PQ++ L WP+GK +GGS+ IN ++ RG D+ WE G W +
Sbjct: 59 WAFQTAPQQH----LNERSLFWPRGKTLGGSSSINAMVYIRGHEEDYQAWEQAGGEYWGW 114
Query: 139 DDVLKYFKKFERINIPELNSDTVYHNTNGLLNVEYSPYKSKLSDIFLKVGLFNSDTVYHN 198
FKK E + + YH T+G L V + LS F++ G+
Sbjct: 115 KRAFALFKKLEH---NQRFDKSNYHGTDGELAVSDLKDLNPLSKSFVQAGM--------- 162
Query: 199 TNGLLNVEYSPYKSKLSDIFLKSSKELGYTNIDYNNPNTKIGFSIVQSTIKNGRRMTASK 258
++K+S N D+N + + G Q T K+G+R ++++
Sbjct: 163 ------------EAKIS------------FNGDFNGAHQE-GVGFYQVTQKHGQRWSSAR 197
Query: 259 AYLKPIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELV-KNGHKR-SVFARKEVIVSSGA 316
A+L +IDR NL +I + K++ + ++A GV + KN H++ EVI+S GA
Sbjct: 198 AFLHDVIDRPNLDIITEAHATKVLFE--DRKAVGVSYIQKNMHQQVKTTDSGEVILSLGA 255
Query: 317 FNSPKLLMLSGVGPREHLTELGIPVVQDL-RVGDNLMEH----------------VAYSA 359
N+P+LLMLSGVG L E GI +V DL VG NL +H VA+S
Sbjct: 256 VNTPQLLMLSGVGAAAELKEHGIALVHDLPEVGKNLQDHLDITLMCAANSRTPIGVAFSF 315
Query: 360 LTFGINKTFSVVTKR 374
+ G+ FS + KR
Sbjct: 316 IPRGLVGLFSYIFKR 330
>sp|Q00593|ALKJ_PSEOL Alcohol dehydrogenase [acceptor] OS=Pseudomonas oleovorans GN=alkJ
PE=1 SV=1
Length = 558
Score = 170 bits (430), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 121/375 (32%), Positives = 180/375 (48%), Gaps = 70/375 (18%)
Query: 24 YDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDED-----RIFTDLVLISHYYQFTPYN 78
YD+IIVGAG GCV+A+RLS PS +V L+EAG D + + L+S+ + N
Sbjct: 2 YDYIIVGAGSAGCVLANRLSADPSKRVCLLEAGPRDTNPLIHMPLGIALLSNSKKL---N 58
Query: 79 WGFKTTPQKNACLGLPNNQCLWPQGKGVGGSTIINGNIFTRGFPNDFNEWESLGNTGWSF 138
W F+T PQ+N L WP+GK +GGS+ IN ++ RG +D++ WE W +
Sbjct: 59 WAFQTAPQQN----LNGRSLFWPRGKTLGGSSSINAMVYIRGHEDDYHAWEQAAGRYWGW 114
Query: 139 DDVLKYFKKFERINIPELNSDTVYHNTNGLLNVEYSPYKSKLSDIFLKVGLFNSDTVYHN 198
L+ FK+ E + + +H +G L V Y + LS F++ G+ N
Sbjct: 115 YRALELFKRLE---CNQRFDKSEHHGVDGELAVSDLKYINPLSKAFVQAGM----EANIN 167
Query: 199 TNGLLNVEYSPYKSKLSDIFLKSSKELGYTNIDYNNPNTKIGFSIVQSTIKNGRRMTASK 258
NG N EY + G Q T KNG+R ++++
Sbjct: 168 FNGDFNGEY------------------------------QDGVGFYQVTQKNGQRWSSAR 197
Query: 259 AYLKPIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVKNG--HKRSVFARKEVIVSSGA 316
A+L ++ R NL +I ++ KI+ + ++A GV +K H+ + EV++S GA
Sbjct: 198 AFLHGVLSRPNLDIITDAHASKILFE--DRKAVGVSYIKKNMHHQVKTTSGGEVLLSLGA 255
Query: 317 FNSPKLLMLSGVGPREHLTELGIPVVQDL-RVGDNLMEH----------------VAYSA 359
+P LLMLSGVG L E G+ +V DL VG NL +H VA S
Sbjct: 256 VGTPHLLMLSGVGAAAELKEHGVSLVHDLPEVGKNLQDHLDITLMCAANSREPIGVALSF 315
Query: 360 LTFGINKTFSVVTKR 374
+ G++ FS V KR
Sbjct: 316 IPRGVSGLFSYVFKR 330
>sp|Q8D3K2|BETA_VIBVU Choline dehydrogenase OS=Vibrio vulnificus (strain CMCP6) GN=betA
PE=3 SV=1
Length = 560
Score = 168 bits (425), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 115/339 (33%), Positives = 167/339 (49%), Gaps = 45/339 (13%)
Query: 20 LLDEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDEDR-IFTDL-VLISHYYQFTPY 77
+ YD+IIVGAG GCV+A RLSE VLL+EAG D+ IF + +S+ Y
Sbjct: 1 MQQHYDYIIVGAGSAGCVLADRLSESGDHSVLLLEAGGSDKSIFIQMPTALSYPMNSEKY 60
Query: 78 NWGFKTTPQKNACLGLPNNQCLWPQGKGVGGSTIINGNIFTRGFPNDFNEWESLGNTGWS 137
W F+T + + L + P+GK +GGS+ ING ++ RG DF+EWE G GW+
Sbjct: 61 AWQFETDAEAD----LDGRRLHCPRGKVLGGSSSINGMVYVRGHACDFDEWEEQGAKGWN 116
Query: 138 FDDVLKYFKKFERINIPELNSDTVYHNTNGLLNVEYSPYKSKLSDIFLKVGLFNSDTVYH 197
+ L YF++ E ++ + Y +G L+ T
Sbjct: 117 YQACLPYFRRAENW----IDGEDEYRGGDGPLS-----------------------TCAG 149
Query: 198 NTNGLLNVEYSPYKSKLSDIFLKSSKELGYTNIDYNNPNTKIGFSIVQSTIKNGRRMTAS 257
N L + L F+ + KE GY N + GF + T+KNG R + S
Sbjct: 150 NKMTL---------NPLYRAFIDAGKEAGYPETSDYNGYQQEGFGPMHMTVKNGVRASTS 200
Query: 258 KAYLKPIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVKNGHKRSVFARKEVIVSSGAF 317
AYL R+N +IK V +I+++ K+A GVE G R+ FA+ EVI S+G+
Sbjct: 201 NAYLSRAKKRSNFKLIKGVVVQRILLE--EKRAVGVEFELAGELRTCFAKNEVISSAGSI 258
Query: 318 NSPKLLMLSGVGPREHLTELGIPVVQDLR-VGDNLMEHV 355
S +LL LSG+GP+ L + G+ V L VG NL +H+
Sbjct: 259 GSVQLLQLSGIGPKTVLEKAGVTPVHHLPGVGQNLQDHL 297
>sp|Q7MF12|BETA_VIBVY Choline dehydrogenase OS=Vibrio vulnificus (strain YJ016) GN=betA
PE=3 SV=1
Length = 560
Score = 168 bits (425), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 115/339 (33%), Positives = 167/339 (49%), Gaps = 45/339 (13%)
Query: 20 LLDEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDEDR-IFTDL-VLISHYYQFTPY 77
+ YD+IIVGAG GCV+A RLSE VLL+EAG D+ IF + +S+ Y
Sbjct: 1 MQQHYDYIIVGAGSAGCVLADRLSESGDHSVLLLEAGGSDKSIFIQMPTALSYPMNSEKY 60
Query: 78 NWGFKTTPQKNACLGLPNNQCLWPQGKGVGGSTIINGNIFTRGFPNDFNEWESLGNTGWS 137
W F+T + + L + P+GK +GGS+ ING ++ RG DF+EWE G GW+
Sbjct: 61 AWQFETDAEAD----LDGRRLHCPRGKVLGGSSSINGMVYVRGHACDFDEWEEQGAKGWN 116
Query: 138 FDDVLKYFKKFERINIPELNSDTVYHNTNGLLNVEYSPYKSKLSDIFLKVGLFNSDTVYH 197
+ L YF++ E ++ + Y +G L+ T
Sbjct: 117 YQACLPYFRRAENW----IDGEDEYRGGDGPLS-----------------------TCAG 149
Query: 198 NTNGLLNVEYSPYKSKLSDIFLKSSKELGYTNIDYNNPNTKIGFSIVQSTIKNGRRMTAS 257
N L + L F+ + KE GY N + GF + T+KNG R + S
Sbjct: 150 NKMTL---------NPLYRAFIDAGKEAGYPETSDYNGYQQEGFGPMHMTVKNGVRASTS 200
Query: 258 KAYLKPIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVKNGHKRSVFARKEVIVSSGAF 317
AYL R+N +IK V +I+++ K+A GVE G R+ FA+ EVI S+G+
Sbjct: 201 NAYLSRAKKRSNFKLIKGVVVQRILLE--EKRAVGVEFELAGELRTCFAKNEVISSAGSI 258
Query: 318 NSPKLLMLSGVGPREHLTELGI-PVVQDLRVGDNLMEHV 355
S +LL LSG+GP+ L + G+ PV VG NL +H+
Sbjct: 259 GSVQLLQLSGIGPKTVLEKAGVTPVYHLPGVGQNLQDHL 297
>sp|A7N2P9|BETA_VIBHB Choline dehydrogenase OS=Vibrio harveyi (strain ATCC BAA-1116 /
BB120) GN=betA PE=3 SV=1
Length = 569
Score = 167 bits (423), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 115/365 (31%), Positives = 175/365 (47%), Gaps = 50/365 (13%)
Query: 20 LLDEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDEDR-IFTDL-VLISHYYQFTPY 77
+ YD+IIVGAG GCV+A RLSE +VLL+EAG D+ IF + +S+ Y
Sbjct: 1 MQQHYDYIIVGAGSAGCVLADRLSESGQHQVLLLEAGGSDKSIFIQMPTALSYPMNTEKY 60
Query: 78 NWGFKTTPQKNACLGLPNNQCLWPQGKGVGGSTIINGNIFTRGFPNDFNEWESLGNTGWS 137
W F+T ++ GL Q P+GK +GGS+ ING ++ RG DF+EWE+ G GW+
Sbjct: 61 AWQFETVAEE----GLDGRQLHCPRGKVLGGSSSINGMVYVRGHACDFDEWEAEGAKGWN 116
Query: 138 FDDVLKYFKKFERINIPELNSDTVYHNTNGLLNVEYSPYKSKLSDIFLKVGLFNSDTVYH 197
+ L YF+K E Y +G VG N + +
Sbjct: 117 YQACLPYFRKAETWT----GGADEYRGGSG------------------PVGTCNGNDMKL 154
Query: 198 NTNGLLNVEYSPYKSKLSDIFLKSSKELGYTNIDYNNPNTKIGFSIVQSTIKNGRRMTAS 257
N L F+++ K+ GY N + GF + T+ G R + S
Sbjct: 155 NP--------------LYQAFIEAGKDAGYPETQDYNGYQQEGFGPMHMTVDKGVRASTS 200
Query: 258 KAYLKPIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVKNGHKRSVFARKEVIVSSGAF 317
AYL R+N ++K +I+++ K+A G+E ++G + FA KEV+ S+G+
Sbjct: 201 NAYLSRAKKRSNFTLMKGVTAHRILLE--GKKAVGIEFEQSGEIKQCFANKEVVSSAGSI 258
Query: 318 NSPKLLMLSGVGPREHLTELGIPVVQDLR-VGDNLMEHVA-----YSALTFGINKTFSVV 371
S +LL LSG+GP+ L + GI V L VG NL +H+ + +N ++
Sbjct: 259 GSVQLLQLSGIGPKTVLDKAGIEVKHTLEGVGKNLQDHLEVYFQYHCKQPITLNSKLGLI 318
Query: 372 TKRLL 376
+K L+
Sbjct: 319 SKGLI 323
>sp|Q0B711|BETA_BURCM Choline dehydrogenase OS=Burkholderia ambifaria (strain ATCC
BAA-244 / AMMD) GN=betA PE=3 SV=1
Length = 566
Score = 164 bits (416), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 113/340 (33%), Positives = 169/340 (49%), Gaps = 50/340 (14%)
Query: 23 EYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDEDRIF---TDL-VLISHYYQFTPYN 78
EYD+II GAG G V+A RL+E P+ VLL+EAG D F T + +++ Q YN
Sbjct: 5 EYDYIICGAGSAGNVLATRLTEDPNVTVLLLEAGGPDYRFDFRTQMPAALAYPLQGRRYN 64
Query: 79 WGFKTTPQKNACLGLPNNQCLWPQGKGVGGSTIINGNIFTRGFPNDFNEWES-LGNTGWS 137
W ++T P+ + + N + +GKG+GGS++ING + RG D++ W + G W+
Sbjct: 65 WAYETDPEPH----MDNRRMECGRGKGLGGSSLINGMCYIRGNALDYDNWSTHKGLENWT 120
Query: 138 FDDVLKYFKKFERINIPELNSDTVYHNTNGLLNVEYSPYKSKLSDIFLKVGLFNSDTVYH 197
+ D L YFKK E ++ YH NG ++V S
Sbjct: 121 YLDCLPYFKKAETRDV----GPNDYHGGNGPVSVTTS----------------------- 153
Query: 198 NTNGLLNVEYSPYKSKLSDIFLKSSKELGYTNIDYNNPNTKIGFSIVQSTI-KNGRRMTA 256
P + L + + + + GY D N + GF + T+ GRR +
Sbjct: 154 ----------KPGANPLFEAMVDAGVQAGYPRTDDLNGYQQEGFGPMDRTVTPKGRRAST 203
Query: 257 SKAYLKPIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVKNGHKRSVFARKEVIVSSGA 316
++ YL R NL ++ ++ +I+ D K+A GV ++ + S AR+EV+V SGA
Sbjct: 204 ARGYLDQAKGRPNLEIVTHALADRILFD--GKRASGVTYLRGSERASAHARREVLVCSGA 261
Query: 317 FNSPKLLMLSGVGPREHLTELGIPVVQDLR-VGDNLMEHV 355
SP+LL SGVGP L EL IP+V DL VG NL +H+
Sbjct: 262 IASPQLLQRSGVGPGAWLKELDIPIVLDLPGVGQNLQDHL 301
>sp|Q39A44|BETA_BURS3 Choline dehydrogenase OS=Burkholderia sp. (strain 383) GN=betA PE=3
SV=1
Length = 566
Score = 162 bits (410), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 113/340 (33%), Positives = 168/340 (49%), Gaps = 50/340 (14%)
Query: 23 EYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDEDRIF---TDL-VLISHYYQFTPYN 78
EYD+II GAG G V+A RL+E P VLL+EAG D F T + +++ Q YN
Sbjct: 5 EYDYIICGAGSAGNVLATRLTEDPDVTVLLLEAGGPDYRFDFRTQMPAALAYPLQGRRYN 64
Query: 79 WGFKTTPQKNACLGLPNNQCLWPQGKGVGGSTIINGNIFTRGFPNDFNEWES-LGNTGWS 137
W ++T P+ + + N + +GKG+GGS++ING + RG D++ W + G W+
Sbjct: 65 WAYETDPEPH----MDNRRMECGRGKGLGGSSLINGMCYIRGNALDYDNWSTHKGLENWT 120
Query: 138 FDDVLKYFKKFERINIPELNSDTVYHNTNGLLNVEYSPYKSKLSDIFLKVGLFNSDTVYH 197
+ D L YFKK E ++ YH NG ++V S
Sbjct: 121 YLDCLPYFKKAETRDV----GPNDYHGGNGPVSVTTS----------------------- 153
Query: 198 NTNGLLNVEYSPYKSKLSDIFLKSSKELGYTNIDYNNPNTKIGFSIVQSTI-KNGRRMTA 256
P + L + + + + GY D N + GF + T+ GRR +
Sbjct: 154 ----------KPGVNPLFEAMVDAGVQAGYPRTDDLNGYQQEGFGPMDRTVTPKGRRAST 203
Query: 257 SKAYLKPIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVKNGHKRSVFARKEVIVSSGA 316
++ YL R NL ++ ++ +I+ D K+A GV ++ + + AR+EV+V SGA
Sbjct: 204 ARGYLDQAKVRPNLEIVTHALADRILFD--GKRASGVTYLRGSERATAHARREVLVCSGA 261
Query: 317 FNSPKLLMLSGVGPREHLTELGIPVVQDLR-VGDNLMEHV 355
SP+LL SGVGP L EL IPVV DL VG NL +H+
Sbjct: 262 IASPQLLQRSGVGPGAWLKELDIPVVLDLPGVGQNLQDHL 301
>sp|A4JJG6|BETA_BURVG Choline dehydrogenase OS=Burkholderia vietnamiensis (strain G4 /
LMG 22486) GN=betA PE=3 SV=1
Length = 566
Score = 162 bits (409), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 110/340 (32%), Positives = 170/340 (50%), Gaps = 50/340 (14%)
Query: 23 EYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDEDRIF---TDL-VLISHYYQFTPYN 78
EYD+II GAG G V+A RL+E P+ VLL+EAG D F T + +++ Q YN
Sbjct: 5 EYDYIICGAGSAGNVLATRLTEDPNVTVLLLEAGGPDYRFDFRTQMPAALAYPLQGRRYN 64
Query: 79 WGFKTTPQKNACLGLPNNQCLWPQGKGVGGSTIINGNIFTRGFPNDFNEWES-LGNTGWS 137
W ++T P+ + + N + +GKG+GGS++ING + RG D++ W + G W+
Sbjct: 65 WAYETDPEPH----MDNRRMECGRGKGLGGSSLINGMCYIRGNALDYDNWSTHQGLERWT 120
Query: 138 FDDVLKYFKKFERINIPELNSDTVYHNTNGLLNVEYSPYKSKLSDIFLKVGLFNSDTVYH 197
+ D L YF+K E ++ YH +G ++V S
Sbjct: 121 YLDCLPYFRKAETRDV----GPNDYHGGDGPVSVTTS----------------------- 153
Query: 198 NTNGLLNVEYSPYKSKLSDIFLKSSKELGYTNIDYNNPNTKIGFSIVQSTI-KNGRRMTA 256
P + L + +++ + GY D N + GF + T+ GRR +
Sbjct: 154 ----------KPGANPLFEAMVEAGVQAGYPRTDDLNGYQQEGFGPMDRTVTPKGRRAST 203
Query: 257 SKAYLKPIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVKNGHKRSVFARKEVIVSSGA 316
++ YL R NL ++ ++ +I+ D K+A GV ++ + + AR+EV+V SGA
Sbjct: 204 ARGYLDQAKTRPNLEIVTHALADRILFD--GKRASGVAYLRGSERATAHARREVLVCSGA 261
Query: 317 FNSPKLLMLSGVGPREHLTELGIPVVQDLR-VGDNLMEHV 355
SP+LL SGVGP L EL IP+V DL VG NL +H+
Sbjct: 262 IASPQLLQRSGVGPGAWLKELDIPIVLDLPGVGQNLQDHL 301
>sp|B1Z034|BETA_BURA4 Choline dehydrogenase OS=Burkholderia ambifaria (strain MC40-6)
GN=betA PE=3 SV=1
Length = 566
Score = 160 bits (406), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 111/340 (32%), Positives = 169/340 (49%), Gaps = 50/340 (14%)
Query: 23 EYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDEDRIF---TDL-VLISHYYQFTPYN 78
EYD+II GAG G V+A RL+E P+ VLL+EAG D F T + +++ Q YN
Sbjct: 5 EYDYIICGAGSAGNVLATRLTEDPNVTVLLLEAGGPDYRFDFRTQMPAALAYPLQGRRYN 64
Query: 79 WGFKTTPQKNACLGLPNNQCLWPQGKGVGGSTIINGNIFTRGFPNDFNEWES-LGNTGWS 137
W ++T P+ + + N + +GKG+GGS++ING + RG D++ W + G W+
Sbjct: 65 WAYETDPEPH----MDNRRMECGRGKGLGGSSLINGMCYIRGNALDYDNWSTHKGLENWT 120
Query: 138 FDDVLKYFKKFERINIPELNSDTVYHNTNGLLNVEYSPYKSKLSDIFLKVGLFNSDTVYH 197
+ D L YFKK E ++ YH +G ++V S
Sbjct: 121 YLDCLPYFKKAETRDV----GPNDYHGGDGPVSVTTS----------------------- 153
Query: 198 NTNGLLNVEYSPYKSKLSDIFLKSSKELGYTNIDYNNPNTKIGFSIVQSTI-KNGRRMTA 256
P + L + + + + GY D N + GF + T+ GRR +
Sbjct: 154 ----------KPGVNPLFEAMVDAGVQAGYPRTDDLNGYQQEGFGPMDRTVTPKGRRAST 203
Query: 257 SKAYLKPIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVKNGHKRSVFARKEVIVSSGA 316
++ YL R NL ++ ++ +I+ D K+A GV ++ + + AR+EV+V SGA
Sbjct: 204 ARGYLDQAKGRPNLEIVTHALADRILFD--GKRASGVTYLRGSERANAHARREVLVCSGA 261
Query: 317 FNSPKLLMLSGVGPREHLTELGIPVVQDLR-VGDNLMEHV 355
SP+LL SGVGP L EL IP+V DL VG NL +H+
Sbjct: 262 IASPQLLQRSGVGPGAWLKELDIPIVLDLPGVGQNLQDHL 301
>sp|A9AMZ9|BETA_BURM1 Choline dehydrogenase OS=Burkholderia multivorans (strain ATCC
17616 / 249) GN=betA PE=3 SV=1
Length = 566
Score = 160 bits (406), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 111/340 (32%), Positives = 170/340 (50%), Gaps = 50/340 (14%)
Query: 23 EYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDEDRIF---TDL-VLISHYYQFTPYN 78
EYD+II GAG G V+A RL+E P+ VLL+EAG D F T + +++ Q YN
Sbjct: 5 EYDYIICGAGSAGNVLATRLTEDPNVTVLLLEAGGPDYRFDFRTQMPAALAYPLQGRRYN 64
Query: 79 WGFKTTPQKNACLGLPNNQCLWPQGKGVGGSTIINGNIFTRGFPNDFNEWES-LGNTGWS 137
W ++T P+ + + N + +GKG+GGS++ING + RG D++ W + G W+
Sbjct: 65 WAYETDPEPH----MDNRRMECGRGKGLGGSSLINGMCYIRGNALDYDNWATHQGLENWT 120
Query: 138 FDDVLKYFKKFERINIPELNSDTVYHNTNGLLNVEYSPYKSKLSDIFLKVGLFNSDTVYH 197
+ D L YFKK E +I YH +G ++V S
Sbjct: 121 YLDCLPYFKKAETRDI----GPNDYHGGDGPVSVTTS----------------------- 153
Query: 198 NTNGLLNVEYSPYKSKLSDIFLKSSKELGYTNIDYNNPNTKIGFSIVQSTI-KNGRRMTA 256
P + L + +++ + GY + N + GF + T+ GRR +
Sbjct: 154 ----------KPGVNPLFEAMVEAGVQAGYPRTEDLNGYQQEGFGPMDRTVTPKGRRAST 203
Query: 257 SKAYLKPIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVKNGHKRSVFARKEVIVSSGA 316
++ YL R NL ++ ++ +I+ D K+A GV ++ + + AR+EV+V SGA
Sbjct: 204 ARGYLDQAKTRPNLEIVTHALADRILFD--GKRASGVTYLRGNERATAHARREVLVCSGA 261
Query: 317 FNSPKLLMLSGVGPREHLTELGIPVVQDLR-VGDNLMEHV 355
SP+LL SGVGP L EL IP+V DL VG NL +H+
Sbjct: 262 IASPQLLQRSGVGPGAWLKELDIPIVLDLPGVGQNLQDHL 301
>sp|A0B2F7|BETA_BURCH Choline dehydrogenase OS=Burkholderia cenocepacia (strain HI2424)
GN=betA PE=3 SV=1
Length = 566
Score = 160 bits (405), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 112/340 (32%), Positives = 168/340 (49%), Gaps = 50/340 (14%)
Query: 23 EYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDEDRIF---TDL-VLISHYYQFTPYN 78
EYD+II GAG G V+A RL+E P VLL+EAG D F T + +++ Q YN
Sbjct: 5 EYDYIICGAGSAGNVLATRLTEDPDVTVLLLEAGGPDYRFDFRTQMPAALAYPLQGRRYN 64
Query: 79 WGFKTTPQKNACLGLPNNQCLWPQGKGVGGSTIINGNIFTRGFPNDFNEWES-LGNTGWS 137
W ++T P+ + + N + +GKG+GGS++ING + RG D++ W + G W+
Sbjct: 65 WAYETDPEPH----MDNRRMECGRGKGLGGSSLINGMCYIRGNALDYDNWSTHKGLENWT 120
Query: 138 FDDVLKYFKKFERINIPELNSDTVYHNTNGLLNVEYSPYKSKLSDIFLKVGLFNSDTVYH 197
+ D L YFKK E ++ YH +G ++V S
Sbjct: 121 YLDCLPYFKKAETRDV----GPNDYHGGSGPVSVTTS----------------------- 153
Query: 198 NTNGLLNVEYSPYKSKLSDIFLKSSKELGYTNIDYNNPNTKIGFSIVQSTI-KNGRRMTA 256
P + L + + + + GY D N + GF + T+ GRR +
Sbjct: 154 ----------KPGVNPLFEAMVDAGVQAGYPRTDDLNGYQQEGFGPMDRTVTPKGRRAST 203
Query: 257 SKAYLKPIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVKNGHKRSVFARKEVIVSSGA 316
++ YL R NL ++ ++ +I+ D K+A GV ++ + + AR+EV+V SGA
Sbjct: 204 ARGYLDQAKVRPNLEIVTHALADRILFD--GKRASGVTYLRGSERATAHARREVLVCSGA 261
Query: 317 FNSPKLLMLSGVGPREHLTELGIPVVQDLR-VGDNLMEHV 355
SP+LL SGVGP L EL IPVV DL VG NL +H+
Sbjct: 262 IASPQLLQRSGVGPGAWLKELDIPVVLDLPGVGQNLQDHL 301
>sp|Q1BQE2|BETA_BURCA Choline dehydrogenase OS=Burkholderia cenocepacia (strain AU 1054)
GN=betA PE=3 SV=1
Length = 566
Score = 160 bits (405), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 112/340 (32%), Positives = 168/340 (49%), Gaps = 50/340 (14%)
Query: 23 EYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDEDRIF---TDL-VLISHYYQFTPYN 78
EYD+II GAG G V+A RL+E P VLL+EAG D F T + +++ Q YN
Sbjct: 5 EYDYIICGAGSAGNVLATRLTEDPDVTVLLLEAGGPDYRFDFRTQMPAALAYPLQGRRYN 64
Query: 79 WGFKTTPQKNACLGLPNNQCLWPQGKGVGGSTIINGNIFTRGFPNDFNEWES-LGNTGWS 137
W ++T P+ + + N + +GKG+GGS++ING + RG D++ W + G W+
Sbjct: 65 WAYETDPEPH----MDNRRMECGRGKGLGGSSLINGMCYIRGNALDYDNWSTHKGLENWT 120
Query: 138 FDDVLKYFKKFERINIPELNSDTVYHNTNGLLNVEYSPYKSKLSDIFLKVGLFNSDTVYH 197
+ D L YFKK E ++ YH +G ++V S
Sbjct: 121 YLDCLPYFKKAETRDV----GPNDYHGGSGPVSVTTS----------------------- 153
Query: 198 NTNGLLNVEYSPYKSKLSDIFLKSSKELGYTNIDYNNPNTKIGFSIVQSTI-KNGRRMTA 256
P + L + + + + GY D N + GF + T+ GRR +
Sbjct: 154 ----------KPGVNPLFEAMVDAGVQAGYPRTDDLNGYQQEGFGPMDRTVTPKGRRAST 203
Query: 257 SKAYLKPIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVKNGHKRSVFARKEVIVSSGA 316
++ YL R NL ++ ++ +I+ D K+A GV ++ + + AR+EV+V SGA
Sbjct: 204 ARGYLDQAKVRPNLEIVTHALADRILFD--GKRASGVTYLRGSERATAHARREVLVCSGA 261
Query: 317 FNSPKLLMLSGVGPREHLTELGIPVVQDLR-VGDNLMEHV 355
SP+LL SGVGP L EL IPVV DL VG NL +H+
Sbjct: 262 IASPQLLQRSGVGPGAWLKELDIPVVLDLPGVGQNLQDHL 301
>sp|B1K707|BETA_BURCC Choline dehydrogenase OS=Burkholderia cenocepacia (strain MC0-3)
GN=betA PE=3 SV=1
Length = 566
Score = 160 bits (405), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 112/340 (32%), Positives = 168/340 (49%), Gaps = 50/340 (14%)
Query: 23 EYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDEDRIF---TDL-VLISHYYQFTPYN 78
EYD+II GAG G V+A RL+E P VLL+EAG D F T + +++ Q YN
Sbjct: 5 EYDYIICGAGSAGNVLATRLTEDPDVTVLLLEAGGPDYRFDFRTQMPAALAYPLQGRRYN 64
Query: 79 WGFKTTPQKNACLGLPNNQCLWPQGKGVGGSTIINGNIFTRGFPNDFNEWES-LGNTGWS 137
W ++T P+ + + N + +GKG+GGS++ING + RG D++ W + G W+
Sbjct: 65 WAYETDPEPH----MDNRRMECGRGKGLGGSSLINGMCYIRGNALDYDNWSTHKGLENWT 120
Query: 138 FDDVLKYFKKFERINIPELNSDTVYHNTNGLLNVEYSPYKSKLSDIFLKVGLFNSDTVYH 197
+ D L YFKK E ++ YH +G ++V S
Sbjct: 121 YLDCLPYFKKAETRDV----GPNDYHGGSGPVSVTTS----------------------- 153
Query: 198 NTNGLLNVEYSPYKSKLSDIFLKSSKELGYTNIDYNNPNTKIGFSIVQSTI-KNGRRMTA 256
P + L + + + + GY D N + GF + T+ GRR +
Sbjct: 154 ----------KPGVNPLFEAMVDAGVQAGYPRTDDLNGYQQEGFGPMDRTVTPKGRRAST 203
Query: 257 SKAYLKPIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVKNGHKRSVFARKEVIVSSGA 316
++ YL R NL ++ ++ +I+ D K+A GV ++ + + AR+EV+V SGA
Sbjct: 204 ARGYLDQAKVRPNLEIVTHALADRILFD--GKRASGVTYLRGSERATAHARREVLVCSGA 261
Query: 317 FNSPKLLMLSGVGPREHLTELGIPVVQDLR-VGDNLMEHV 355
SP+LL SGVGP L EL IPVV DL VG NL +H+
Sbjct: 262 IASPQLLQRSGVGPGAWLKELDIPVVLDLPGVGQNLQDHL 301
>sp|B4EHJ2|BETA_BURCJ Choline dehydrogenase OS=Burkholderia cepacia (strain J2315 / LMG
16656) GN=betA PE=3 SV=1
Length = 566
Score = 159 bits (401), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 111/340 (32%), Positives = 167/340 (49%), Gaps = 50/340 (14%)
Query: 23 EYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDEDRIF---TDL-VLISHYYQFTPYN 78
EYD+II GAG G V+A RL+E P VLL+EAG D F T + +++ Q YN
Sbjct: 5 EYDYIICGAGSAGNVLATRLTEDPDVTVLLLEAGGPDYRFDFRTQMPAALAYPLQGRRYN 64
Query: 79 WGFKTTPQKNACLGLPNNQCLWPQGKGVGGSTIINGNIFTRGFPNDFNEWES-LGNTGWS 137
W ++T P+ + + N + +GKG+GGS++ING + RG D++ W + G W+
Sbjct: 65 WAYETDPEPH----MDNRRMECGRGKGLGGSSLINGMCYIRGNALDYDNWSTHKGLENWT 120
Query: 138 FDDVLKYFKKFERINIPELNSDTVYHNTNGLLNVEYSPYKSKLSDIFLKVGLFNSDTVYH 197
+ D L YFKK E ++ YH +G ++V S
Sbjct: 121 YLDCLPYFKKAETRDV----GPNDYHGGSGPVSVTTS----------------------- 153
Query: 198 NTNGLLNVEYSPYKSKLSDIFLKSSKELGYTNIDYNNPNTKIGFSIVQSTI-KNGRRMTA 256
P + L + + + + GY D N + GF + T+ GRR +
Sbjct: 154 ----------KPGVNPLFEAMVDAGVQAGYPRTDDLNGYQQEGFGPMDRTVTPKGRRAST 203
Query: 257 SKAYLKPIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVKNGHKRSVFARKEVIVSSGA 316
++ YL R NL ++ ++ +I+ D K+A GV ++ + + AR+EV+V SGA
Sbjct: 204 ARGYLDQAKARPNLEIVTHALADRILFD--GKRASGVTYLRGSERATAHARREVLVCSGA 261
Query: 317 FNSPKLLMLSGVGPREHLTELGIPVVQDLR-VGDNLMEHV 355
SP+LL SGVGP L L IPVV DL VG NL +H+
Sbjct: 262 IASPQLLQRSGVGPGAWLKALDIPVVLDLPGVGQNLQDHL 301
>sp|Q2T6D0|BETA_BURTA Choline dehydrogenase OS=Burkholderia thailandensis (strain E264 /
ATCC 700388 / DSM 13276 / CIP 106301) GN=betA PE=3 SV=1
Length = 565
Score = 156 bits (395), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 110/340 (32%), Positives = 168/340 (49%), Gaps = 50/340 (14%)
Query: 23 EYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDEDRIF---TDL-VLISHYYQFTPYN 78
E+D+II GAG G V+A RL+E P VLL+EAG D F T + +++ Q YN
Sbjct: 5 EFDYIICGAGSAGNVLATRLTEDPDVTVLLLEAGGPDYRFDFRTQMPAALAYPLQGRRYN 64
Query: 79 WGFKTTPQKNACLGLPNNQCLWPQGKGVGGSTIINGNIFTRGFPNDFNEWESL-GNTGWS 137
W ++T P+ + + N + +GKG+GGS++ING + RG D++ W + G W+
Sbjct: 65 WAYETDPEPH----MNNRRMECGRGKGLGGSSLINGMCYIRGNALDYDNWSTHKGLEDWT 120
Query: 138 FDDVLKYFKKFERINIPELNSDTVYHNTNGLLNVEYSPYKSKLSDIFLKVGLFNSDTVYH 197
+ D L YF+K E ++ YH +G ++V S
Sbjct: 121 YLDCLPYFRKAETRDV----GPNDYHGGDGPVSVTTS----------------------- 153
Query: 198 NTNGLLNVEYSPYKSKLSDIFLKSSKELGYTNIDYNNPNTKIGFSIVQSTI-KNGRRMTA 256
P + L + +++ + GY D N + GF + T+ GRR +
Sbjct: 154 ----------KPGVNPLFEAMVEAGVQAGYPRTDDLNGYQQEGFGPMDRTVTPRGRRAST 203
Query: 257 SKAYLKPIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVKNGHKRSVFARKEVIVSSGA 316
++ YL R NL ++ ++ +I+ K+A GV + + + AR+EV+V SGA
Sbjct: 204 ARGYLDQARARPNLEIVTHALADRILFS--GKRATGVTFLHGSARVTAHARREVLVCSGA 261
Query: 317 FNSPKLLMLSGVGPREHLTELGIPVVQDLR-VGDNLMEHV 355
SP+LL SGVGP E L EL IPVV DL VG NL +H+
Sbjct: 262 IASPQLLQRSGVGPGEWLRELDIPVVLDLPGVGRNLQDHL 301
>sp|Q9X2M2|BETA_STAXY Choline dehydrogenase OS=Staphylococcus xylosus GN=betA PE=3 SV=1
Length = 560
Score = 155 bits (391), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 112/342 (32%), Positives = 163/342 (47%), Gaps = 49/342 (14%)
Query: 20 LLDEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDEDRIFTDLVLISHYYQFTP--- 76
+ + YD+II+G G G V+ RLSE S VL++EAG D + L+ + +
Sbjct: 1 MKESYDYIIIGGGSAGSVLGGRLSEDVSNNVLVLEAGRSDYPWDLLIQMPAALMYPAGNK 60
Query: 77 -YNWGFKTTPQKNACLGLPNNQCLWPQGKGVGGSTIINGNIFTRGFPNDFNEW-ESLGNT 134
Y+W ++TTP+ + + + +GK +GGS+ ING I+ RG P D+ +W + G
Sbjct: 61 LYDWIYETTPEPH----MDGRKVGHARGKVLGGSSSINGMIYQRGNPMDYEKWAKPEGME 116
Query: 135 GWSFDDVLKYFKKFERINIPELNSDTVYHNTNGLLNVEYSPYKSKLSDIFLKVGLFNSDT 194
W + L YFK+ E T + + G PY+ I L+ G
Sbjct: 117 SWDYAHCLPYFKRLE----------TTFGSKKG------DPYRGHHGPIKLRRG------ 154
Query: 195 VYHNTNGLLNVEYSPYKSKLSDIFLKSSKELGYTNIDYNNPNTKIGFSIVQSTIKNGRRM 254
P + L F + E GY N + GF S + NGRR+
Sbjct: 155 --------------PADNPLFQAFFDAGVEAGYNKTPDVNGFRQEGFGPFDSQVHNGRRV 200
Query: 255 TASKAYLKPIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVKNGHKRSVFARKEVIVSS 314
+AS+AYL P + R NL V + V K+ + + GV KNG K + KEVI+S
Sbjct: 201 SASRAYLHPAMKRKNLEVQTRAFVTKLNFE--GNKVTGVTFKKNG-KEHTESAKEVILSG 257
Query: 315 GAFNSPKLLMLSGVGPREHLTELGI-PVVQDLRVGDNLMEHV 355
GA NSP+LL LSG+G EHL LGI P + VG+N +H+
Sbjct: 258 GAINSPQLLQLSGIGDSEHLRSLGIEPRIHLPGVGENFEDHL 299
>sp|Q62CH8|BETA_BURMA Choline dehydrogenase OS=Burkholderia mallei (strain ATCC 23344)
GN=betA PE=3 SV=1
Length = 565
Score = 154 bits (390), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 109/340 (32%), Positives = 168/340 (49%), Gaps = 50/340 (14%)
Query: 23 EYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDEDRIF---TDL-VLISHYYQFTPYN 78
E+D+II GAG G V+A RL+E P VLL+EAG D F T + +++ Q YN
Sbjct: 5 EFDYIICGAGSAGNVLATRLTEDPGVTVLLLEAGGPDYRFDFRTQMPAALAYPLQGRRYN 64
Query: 79 WGFKTTPQKNACLGLPNNQCLWPQGKGVGGSTIINGNIFTRGFPNDFNEWESL-GNTGWS 137
W ++T P+ + + + + +GKG+GGS++ING + RG D++ W + G W+
Sbjct: 65 WAYETDPEPH----MNHRRMECGRGKGLGGSSLINGMCYIRGNALDYDNWATHKGLEDWA 120
Query: 138 FDDVLKYFKKFERINIPELNSDTVYHNTNGLLNVEYSPYKSKLSDIFLKVGLFNSDTVYH 197
+ D L YF+K E ++ YH +G ++V S
Sbjct: 121 YLDCLPYFRKAETRDV----GPNDYHGGDGPVSVTTS----------------------- 153
Query: 198 NTNGLLNVEYSPYKSKLSDIFLKSSKELGYTNIDYNNPNTKIGFSIVQSTI-KNGRRMTA 256
P + L + +++ + GY D N + GF + T+ GRR +
Sbjct: 154 ----------KPGVNPLFEAMVEAGVQAGYPRTDDLNGYQQEGFGPMDRTVTPRGRRAST 203
Query: 257 SKAYLKPIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVKNGHKRSVFARKEVIVSSGA 316
++ YL R NL ++ ++ +I+ K+A GV + + + AR+EV+V SGA
Sbjct: 204 ARGYLDQARARPNLEIVTHALADRILFS--GKRATGVTFLHGSARVTAHARREVLVCSGA 261
Query: 317 FNSPKLLMLSGVGPREHLTELGIPVVQDLR-VGDNLMEHV 355
SP+LL SGVGP E L EL IPVV DL VG NL +H+
Sbjct: 262 IASPQLLQRSGVGPGEWLRELDIPVVLDLPGVGRNLQDHL 301
>sp|Q3JLL7|BETA_BURP1 Choline dehydrogenase OS=Burkholderia pseudomallei (strain 1710b)
GN=betA PE=3 SV=1
Length = 565
Score = 154 bits (390), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 109/340 (32%), Positives = 168/340 (49%), Gaps = 50/340 (14%)
Query: 23 EYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDEDRIF---TDL-VLISHYYQFTPYN 78
E+D+II GAG G V+A RL+E P VLL+EAG D F T + +++ Q YN
Sbjct: 5 EFDYIICGAGSAGNVLATRLTEDPGVTVLLLEAGGPDYRFDFRTQMPAALAYPLQGRRYN 64
Query: 79 WGFKTTPQKNACLGLPNNQCLWPQGKGVGGSTIINGNIFTRGFPNDFNEWESL-GNTGWS 137
W ++T P+ + + + + +GKG+GGS++ING + RG D++ W + G W+
Sbjct: 65 WAYETDPEPH----MNHRRMECGRGKGLGGSSLINGMCYIRGNALDYDNWATHKGLEDWA 120
Query: 138 FDDVLKYFKKFERINIPELNSDTVYHNTNGLLNVEYSPYKSKLSDIFLKVGLFNSDTVYH 197
+ D L YF+K E ++ YH +G ++V S
Sbjct: 121 YLDCLPYFRKAETRDV----GPNDYHGGDGPVSVTTS----------------------- 153
Query: 198 NTNGLLNVEYSPYKSKLSDIFLKSSKELGYTNIDYNNPNTKIGFSIVQSTI-KNGRRMTA 256
P + L + +++ + GY D N + GF + T+ GRR +
Sbjct: 154 ----------KPGVNPLFEAMVEAGVQAGYPRTDDLNGYQQEGFGPMDRTVTPRGRRAST 203
Query: 257 SKAYLKPIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVKNGHKRSVFARKEVIVSSGA 316
++ YL R NL ++ ++ +I+ K+A GV + + + AR+EV+V SGA
Sbjct: 204 ARGYLDQARARPNLEIVTHALADRILFS--GKRATGVTFLHGSARVTAHARREVLVCSGA 261
Query: 317 FNSPKLLMLSGVGPREHLTELGIPVVQDLR-VGDNLMEHV 355
SP+LL SGVGP E L EL IPVV DL VG NL +H+
Sbjct: 262 IASPQLLQRSGVGPGEWLRELDIPVVLDLPGVGRNLQDHL 301
>sp|Q1QXE1|BETA1_CHRSD Choline dehydrogenase OS=Chromohalobacter salexigens (strain DSM
3043 / ATCC BAA-138 / NCIMB 13768) GN=betA PE=3 SV=1
Length = 560
Score = 154 bits (389), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 110/340 (32%), Positives = 171/340 (50%), Gaps = 50/340 (14%)
Query: 23 EYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDEDRIF---TDL-VLISHYYQFTPYN 78
EYD+II+GAG G V+A RL+E P +VLL+EAG D F T + +++ Q YN
Sbjct: 6 EYDYIIIGAGSAGNVLATRLTEDPDVQVLLLEAGGPDYRFDFRTQMPAALAYPLQGKRYN 65
Query: 79 WGFKTTPQKNACLGLPNNQCLWPQGKGVGGSTIINGNIFTRGFPNDFNEWESL-GNTGWS 137
W F+T P+ + N + +GKG+GGS++ING + RG D++ W + G W+
Sbjct: 66 WAFETDPEPY----MNNRRMECGRGKGLGGSSLINGMCYLRGNALDYDNWAKIPGLEDWN 121
Query: 138 FDDVLKYFKKFERINIPELNSDTVYHNTNGLLNVEYSPYKSKLSDIFLKVGLFNSDTVYH 197
+ L YFK+ E +I YH +G ++V +P +
Sbjct: 122 YLQCLPYFKRAETRDI----GPNDYHGGDGPVSVA-TPKEG------------------- 157
Query: 198 NTNGLLNVEYSPYKSKLSDIFLKSSKELGYTNIDYNNPNTKIGFSIV-QSTIKNGRRMTA 256
++L F+++ E GY + N + GF + ++T NGRR +
Sbjct: 158 -------------NNELYGAFIRAGIEAGYPATEDVNGYQQEGFGPMDRTTTPNGRRAST 204
Query: 257 SKAYLKPIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVKNGHKRSVFARKEVIVSSGA 316
++ YL R NL + + +I+ K+A GV + G + V AR+EV++ +GA
Sbjct: 205 ARGYLDIAKQRPNLTI--ETHATTDVIEFEGKRAVGVSYERKGQAQRVRARREVLLCAGA 262
Query: 317 FNSPKLLMLSGVGPREHLTELGIPVVQDLR-VGDNLMEHV 355
SP++L SGVG EHL E IPVV +L VG+NL +H+
Sbjct: 263 IASPQILQRSGVGNPEHLEEFDIPVVHELPGVGENLQDHL 302
>sp|Q5HL11|BETA_STAEQ Choline dehydrogenase OS=Staphylococcus epidermidis (strain ATCC
35984 / RP62A) GN=betA PE=3 SV=1
Length = 572
Score = 153 bits (387), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 115/345 (33%), Positives = 163/345 (47%), Gaps = 49/345 (14%)
Query: 18 KRLLDEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDEDRIFTDLVLISHYYQFTP- 76
+R D YD++I+G G G V+ RLSE VL++EAG D + + + F
Sbjct: 2 RRKRDSYDYVIIGGGSAGSVLGARLSEDKDKNVLVLEAGRSDYFWDLFIQMPAALMFPSG 61
Query: 77 ---YNWGFKTTPQKNACLGLPNNQCLWPQGKGVGGSTIINGNIFTRGFPNDFNEW-ESLG 132
Y+W ++T + + + +GK +GGS+ ING I+ RG P D+ W E G
Sbjct: 62 NRFYDWEYQTDEEPHM-----GRRVDHARGKVLGGSSSINGMIYQRGNPMDYEGWAEPEG 116
Query: 133 NTGWSFDDVLKYFKKFERINIPELNSDTVYHNTNGLLNVEYSPYKSKLSDIFLKVGLFNS 192
W F L YFKK E T Y +PY
Sbjct: 117 MDTWDFAHCLPYFKKLE----------TTYGA---------APY---------------- 141
Query: 193 DTVYHNTNGLLNVEYSPYKSKLSDIFLKSSKELGYTNIDYNNPNTKIGFSIVQSTIKNGR 252
D V +G + ++ P + L F + E GY N + GF S + +GR
Sbjct: 142 DKV-RGHDGPIKLKRGPATNPLFKSFFNAGVEAGYHKTADVNGYRQEGFGPFDSQVHHGR 200
Query: 253 RMTASKAYLKPIIDRTNLHVIKNSRVVKIIIDP-ISKQAKGVELVKNGHKRSVFARKEVI 311
RM+AS+AYL+P + R NL V + V K+I D SK+ GV KNG + +V A EVI
Sbjct: 201 RMSASRAYLRPALRRRNLDVETRAFVTKLIFDENNSKKVTGVTFKKNGKEHTVHA-NEVI 259
Query: 312 VSSGAFNSPKLLMLSGVGPREHLTELGI-PVVQDLRVGDNLMEHV 355
+S GAFN+P+LL LSG+G E L GI P + VG+N +H+
Sbjct: 260 LSGGAFNTPQLLQLSGIGDSEFLKSKGIEPRMHLPGVGENFEDHL 304
>sp|Q8CMY2|BETA_STAES Choline dehydrogenase OS=Staphylococcus epidermidis (strain ATCC
12228) GN=betA PE=3 SV=1
Length = 572
Score = 153 bits (387), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 115/345 (33%), Positives = 163/345 (47%), Gaps = 49/345 (14%)
Query: 18 KRLLDEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDEDRIFTDLVLISHYYQFTP- 76
+R D YD++I+G G G V+ RLSE VL++EAG D + + + F
Sbjct: 2 RRKRDSYDYVIIGGGSAGSVLGARLSEDKDKNVLVLEAGRSDYFWDLFIQMPAALMFPSG 61
Query: 77 ---YNWGFKTTPQKNACLGLPNNQCLWPQGKGVGGSTIINGNIFTRGFPNDFNEW-ESLG 132
Y+W ++T + + + +GK +GGS+ ING I+ RG P D+ W E G
Sbjct: 62 NRFYDWEYQTDEEPHM-----GRRVDHARGKVLGGSSSINGMIYQRGNPMDYEGWAEPEG 116
Query: 133 NTGWSFDDVLKYFKKFERINIPELNSDTVYHNTNGLLNVEYSPYKSKLSDIFLKVGLFNS 192
W F L YFKK E T Y +PY
Sbjct: 117 MDTWDFAHCLPYFKKLE----------TTYGA---------APY---------------- 141
Query: 193 DTVYHNTNGLLNVEYSPYKSKLSDIFLKSSKELGYTNIDYNNPNTKIGFSIVQSTIKNGR 252
D V +G + ++ P + L F + E GY N + GF S + +GR
Sbjct: 142 DKV-RGHDGPIKLKRGPATNPLFKSFFNAGVEAGYHKTADVNGYRQEGFGPFDSQVHHGR 200
Query: 253 RMTASKAYLKPIIDRTNLHVIKNSRVVKIIIDP-ISKQAKGVELVKNGHKRSVFARKEVI 311
RM+AS+AYL+P + R NL V + V K+I D SK+ GV KNG + +V A EVI
Sbjct: 201 RMSASRAYLRPALRRRNLDVETRAFVTKLIFDENNSKKVTGVTFKKNGKEHTVHA-NEVI 259
Query: 312 VSSGAFNSPKLLMLSGVGPREHLTELGI-PVVQDLRVGDNLMEHV 355
+S GAFN+P+LL LSG+G E L GI P + VG+N +H+
Sbjct: 260 LSGGAFNTPQLLQLSGIGDSEFLKSKGIEPRMHLPGVGENFEDHL 304
>sp|C6DKY4|BETA_PECCP Choline dehydrogenase OS=Pectobacterium carotovorum subsp.
carotovorum (strain PC1) GN=betA PE=3 SV=1
Length = 559
Score = 153 bits (387), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 110/340 (32%), Positives = 174/340 (51%), Gaps = 50/340 (14%)
Query: 23 EYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDED---RIFTDL-VLISHYYQFTPYN 78
EYD+II+GAG G V+A RL+E VLL+EAG D T + ++ Q YN
Sbjct: 2 EYDYIIIGAGSAGNVLATRLTEESDVSVLLLEAGGPDYRLDFRTQMPAALAFPLQGKRYN 61
Query: 79 WGFKTTPQKNACLGLPNNQCLWPQGKGVGGSTIINGNIFTRGFPNDFNEWESL-GNTGWS 137
W ++T P+ + + N + +GKG+GGS++ING + RG DF+ W ++ G WS
Sbjct: 62 WAYETDPEPH----MNNRRMECGRGKGLGGSSLINGMCYIRGNAMDFDNWATMPGLEDWS 117
Query: 138 FDDVLKYFKKFERINIPELNSDTVYHNTNGLLNVEYSPYKSKLSDIFLKVGLFNSDTVYH 197
+ D L YF+K E ++ YH G ++V +P K+G ++ ++H
Sbjct: 118 YLDCLPYFRKAETRDV----GSNDYHGATGPVSVA-TP----------KMG---NNELFH 159
Query: 198 NTNGLLNVEYSPYKSKLSDIFLKSSKELGYTNIDYNNPNTKIGFSIVQSTI-KNGRRMTA 256
+++ + GY D N + GF + T+ GRR +
Sbjct: 160 -------------------AMVEAGVQAGYPRTDDLNGYQQEGFGPMDRTVTPKGRRAST 200
Query: 257 SKAYLKPIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVKNGHKRSVFARKEVIVSSGA 316
++ YL R NL ++ ++ KI+ + K+A GV K ++V AR+EV++ +GA
Sbjct: 201 ARGYLDQAKGRKNLTIVTHALTDKILFE--GKRAVGVAYFKGESPQTVQARREVLLCAGA 258
Query: 317 FNSPKLLMLSGVGPREHLTELGIPVVQDLR-VGDNLMEHV 355
SP++L SGVGP++ L L IPVV DL VG+NL +H+
Sbjct: 259 IASPQILQRSGVGPKDLLQGLDIPVVHDLPGVGENLQDHL 298
>sp|Q4A0Q1|BETA_STAS1 Choline dehydrogenase OS=Staphylococcus saprophyticus subsp.
saprophyticus (strain ATCC 15305 / DSM 20229) GN=betA
PE=3 SV=1
Length = 560
Score = 153 bits (387), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 109/338 (32%), Positives = 161/338 (47%), Gaps = 49/338 (14%)
Query: 24 YDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDEDRIFTDLVLISHYYQFTP----YNW 79
YD+II+G G G V+ R+SE S VL++EAG D + L+ + + Y+W
Sbjct: 5 YDYIIIGGGSAGSVLGSRISEDVSNNVLVLEAGRSDYPWDLLIQMPAALMYPAGNKLYDW 64
Query: 80 GFKTTPQKNACLGLPNNQCLWPQGKGVGGSTIINGNIFTRGFPNDFNEW-ESLGNTGWSF 138
++TTP+ + + + +GK +GGS+ ING I+ RG P D+ +W + G W +
Sbjct: 65 IYETTPEPH----MDGRKVGHARGKVLGGSSSINGMIYQRGNPMDYEKWAKPEGMDSWDY 120
Query: 139 DDVLKYFKKFERINIPELNSDTVYHNTNGLLNVEYSPYKSKLSDIFLKVGLFNSDTVYHN 198
L YFK+ E+ T G D +
Sbjct: 121 AHCLPYFKRLEK--------------TFGA----------------------TKDDQFRG 144
Query: 199 TNGLLNVEYSPYKSKLSDIFLKSSKELGYTNIDYNNPNTKIGFSIVQSTIKNGRRMTASK 258
+G + + P + L F + E GY N + GF S + NGRR++AS+
Sbjct: 145 HHGPIKLRRGPADNPLFQAFFDAGVEAGYNKTPDVNGFRQEGFGPFDSQVHNGRRVSASR 204
Query: 259 AYLKPIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVKNGHKRSVFARKEVIVSSGAFN 318
AYL P + R NL V + V K+ + + GV KNG + +V A KEVI+S GA N
Sbjct: 205 AYLHPAMKRKNLEVQTRAFVTKLNFE--GNKVTGVTFKKNGREHTVNA-KEVILSGGAIN 261
Query: 319 SPKLLMLSGVGPREHLTELGI-PVVQDLRVGDNLMEHV 355
SP+LL LSG+G EHL LGI P + VG+N +H+
Sbjct: 262 SPQLLQLSGIGDSEHLRSLGIEPRIHLPGVGENFEDHL 299
>sp|B0KN19|BETA_PSEPG Choline dehydrogenase OS=Pseudomonas putida (strain GB-1) GN=betA
PE=3 SV=1
Length = 565
Score = 153 bits (386), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 117/345 (33%), Positives = 173/345 (50%), Gaps = 52/345 (15%)
Query: 20 LLDEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDEDRIF---TDL-VLISHYYQFT 75
+ E+D+IIVGAG G +A RL+E VLL+EAG D F T + ++ Q
Sbjct: 1 MSQEFDYIIVGAGSAGNTLATRLTEDAGVTVLLLEAGGPDYRFDFRTQMPAALAFPLQGR 60
Query: 76 PYNWGFKTTPQKNACLGLPNNQCLWPQGKGVGGSTIINGNIFTRGFPNDFNEWESL-GNT 134
YNW ++T P+ + + + +GKG+GGS++ING + RG DF+ W L G
Sbjct: 61 RYNWAYETDPEPH----MDGRRMECGRGKGLGGSSLINGMCYIRGNAMDFDGWAELPGLQ 116
Query: 135 GWSFDDVLKYFKKFERINIPELNSDTVYHNTNGLLNVEYSPYKSKLSDIFLKVGLFNSDT 194
W++ D L YF+K E +I YH G ++V K G ++
Sbjct: 117 DWTYLDCLPYFRKAETRDI----GPNDYHGGEGPVSVATP-----------KAG---NNP 158
Query: 195 VYHNTNGLLNVEYSPYKSKLSDIFLKSSKELGYTNIDYNNPNTKIGFSIV-QSTIKNGRR 253
++H +++ + GY + N + GF + +S KNGRR
Sbjct: 159 LFH-------------------AMVEAGVQAGYPRTEDLNGYQQEGFGPMDRSVTKNGRR 199
Query: 254 MTASKAYLKPIIDRTNLHVIKNSRVVKIIIDPISKQAKGVE-LVKNGHKR-SVFARKEVI 311
+ ++ YL R NL ++ ++ +++ D K+A GV LV + +R ARKEVI
Sbjct: 200 SSTARGYLDQAKKRPNLTIVTHALSDRVLFD--GKRAVGVTYLVGDSEERVEARARKEVI 257
Query: 312 VSSGAFNSPKLLMLSGVGPREHLTELGIPVVQDLR-VGDNLMEHV 355
VSSGA SP+LL SGVGPR L L IPVV DL VG+NL +H+
Sbjct: 258 VSSGAIASPQLLQRSGVGPRALLESLDIPVVHDLPGVGENLQDHL 302
>sp|A5WA97|BETA_PSEP1 Choline dehydrogenase OS=Pseudomonas putida (strain F1 / ATCC
700007) GN=betA PE=3 SV=1
Length = 565
Score = 152 bits (385), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 117/345 (33%), Positives = 173/345 (50%), Gaps = 52/345 (15%)
Query: 20 LLDEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDEDRIF---TDL-VLISHYYQFT 75
+ E+D+IIVGAG G +A RL+E VLL+EAG D F T + ++ Q
Sbjct: 1 MSQEFDYIIVGAGSAGNTLATRLTEDAGVTVLLLEAGGPDYRFDFRTQMPAALAFPLQGR 60
Query: 76 PYNWGFKTTPQKNACLGLPNNQCLWPQGKGVGGSTIINGNIFTRGFPNDFNEWESL-GNT 134
YNW ++T P+ + + +GKG+GGS++ING + RG DF+ W L G
Sbjct: 61 RYNWAYETDPEPY----MDGRRMECGRGKGLGGSSLINGMCYIRGNAMDFDGWAELPGLE 116
Query: 135 GWSFDDVLKYFKKFERINIPELNSDTVYHNTNGLLNVEYSPYKSKLSDIFLKVGLFNSDT 194
W++ D L YF+K E +I YH +G ++V K G ++
Sbjct: 117 DWTYLDCLPYFRKAETRDI----GPNDYHGGDGPVSVATP-----------KAG---NNP 158
Query: 195 VYHNTNGLLNVEYSPYKSKLSDIFLKSSKELGYTNIDYNNPNTKIGFSIV-QSTIKNGRR 253
++H +++ + GY + N + GF + +S KNGRR
Sbjct: 159 LFH-------------------AMVEAGVQAGYPRTEDLNGYQQEGFGPMDRSVTKNGRR 199
Query: 254 MTASKAYLKPIIDRTNLHVIKNSRVVKIIIDPISKQAKGVE-LVKNGHKR-SVFARKEVI 311
+ ++ YL R NL ++ ++ +++ D K+A GV LV + +R ARKEVI
Sbjct: 200 SSTARGYLDQAKKRPNLTIVTHALTDRVLFD--GKRAVGVTYLVGDSEERVEARARKEVI 257
Query: 312 VSSGAFNSPKLLMLSGVGPREHLTELGIPVVQDLR-VGDNLMEHV 355
VSSGA SP+LL SGVGPR L L IPVV DL VG+NL +H+
Sbjct: 258 VSSGAIASPQLLQRSGVGPRALLESLDIPVVHDLPGVGENLQDHL 302
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.138 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 150,496,841
Number of Sequences: 539616
Number of extensions: 6892033
Number of successful extensions: 18265
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 52
Number of HSP's that attempted gapping in prelim test: 17472
Number of HSP's gapped (non-prelim): 369
length of query: 385
length of database: 191,569,459
effective HSP length: 119
effective length of query: 266
effective length of database: 127,355,155
effective search space: 33876471230
effective search space used: 33876471230
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.5 bits)