Query psy10417
Match_columns 385
No_of_seqs 205 out of 2102
Neff 8.7
Searched_HMMs 46136
Date Fri Aug 16 17:22:16 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10417.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10417hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1238|consensus 100.0 5.2E-56 1.1E-60 437.5 26.4 321 19-376 53-376 (623)
2 PRK02106 choline dehydrogenase 100.0 7.2E-51 1.6E-55 416.3 31.0 304 20-369 2-313 (560)
3 TIGR01810 betA choline dehydro 100.0 5.7E-50 1.2E-54 407.5 31.3 298 25-369 1-306 (532)
4 PF00732 GMC_oxred_N: GMC oxid 100.0 3.4E-51 7.3E-56 387.3 20.0 289 24-356 1-296 (296)
5 COG2303 BetA Choline dehydroge 100.0 3E-45 6.5E-50 371.0 26.4 306 19-368 3-316 (542)
6 PLN02785 Protein HOTHEAD 100.0 6E-40 1.3E-44 334.3 27.3 276 21-367 53-339 (587)
7 TIGR02462 pyranose_ox pyranose 100.0 9E-30 2E-34 255.2 22.1 277 24-367 1-326 (544)
8 PRK12845 3-ketosteroid-delta-1 99.6 8.7E-14 1.9E-18 142.3 17.5 59 261-321 223-281 (564)
9 PRK07121 hypothetical protein; 99.6 2.7E-13 5.9E-18 137.2 20.5 62 261-323 183-244 (492)
10 PRK12835 3-ketosteroid-delta-1 99.5 1.2E-13 2.6E-18 142.1 16.9 64 260-324 218-282 (584)
11 PRK12837 3-ketosteroid-delta-1 99.5 3.1E-13 6.7E-18 137.3 17.3 64 259-324 178-242 (513)
12 PRK11101 glpA sn-glycerol-3-ph 99.5 6.9E-13 1.5E-17 135.6 19.5 61 264-328 158-220 (546)
13 PF00890 FAD_binding_2: FAD bi 99.5 8.3E-14 1.8E-18 138.1 12.3 59 261-323 147-207 (417)
14 PRK12844 3-ketosteroid-delta-1 99.5 2.5E-13 5.4E-18 139.1 15.8 61 260-322 213-273 (557)
15 PRK08274 tricarballylate dehyd 99.5 7.5E-13 1.6E-17 133.2 18.4 66 261-329 137-203 (466)
16 PF01266 DAO: FAD dependent ox 99.5 5.5E-13 1.2E-17 128.5 16.1 60 261-328 153-212 (358)
17 PRK06481 fumarate reductase fl 99.5 9.6E-13 2.1E-17 133.5 18.2 55 263-320 198-253 (506)
18 PRK07843 3-ketosteroid-delta-1 99.4 5.2E-12 1.1E-16 129.5 18.1 63 261-325 214-276 (557)
19 PRK06175 L-aspartate oxidase; 99.4 7E-12 1.5E-16 124.7 17.0 57 260-319 134-190 (433)
20 PRK06452 sdhA succinate dehydr 99.4 9.4E-12 2E-16 127.8 17.4 52 264-318 145-198 (566)
21 PRK12834 putative FAD-binding 99.4 9.9E-12 2.1E-16 127.4 17.3 36 21-57 2-37 (549)
22 PRK12409 D-amino acid dehydrog 99.4 2.6E-11 5.6E-16 120.0 19.6 34 24-58 2-35 (410)
23 PLN02815 L-aspartate oxidase 99.4 1.2E-11 2.6E-16 127.1 17.3 55 264-319 165-223 (594)
24 COG2081 Predicted flavoprotein 99.4 5.5E-12 1.2E-16 119.6 13.3 108 216-342 82-189 (408)
25 PRK08958 sdhA succinate dehydr 99.4 6.4E-12 1.4E-16 129.4 14.9 54 264-319 152-207 (588)
26 TIGR01813 flavo_cyto_c flavocy 99.4 1.6E-11 3.4E-16 122.7 17.1 58 261-320 136-194 (439)
27 PRK07395 L-aspartate oxidase; 99.4 4.7E-12 1E-16 129.4 13.4 53 266-319 146-198 (553)
28 PRK07573 sdhA succinate dehydr 99.4 2.4E-11 5.2E-16 126.2 18.4 53 264-319 179-233 (640)
29 PRK07804 L-aspartate oxidase; 99.4 2.7E-11 5.8E-16 123.9 18.2 57 261-319 150-211 (541)
30 PRK12842 putative succinate de 99.3 2.1E-11 4.5E-16 125.6 16.2 60 263-324 222-281 (574)
31 PRK06263 sdhA succinate dehydr 99.3 2.3E-11 4.9E-16 124.6 16.2 57 261-319 140-198 (543)
32 PRK12843 putative FAD-binding 99.3 6.5E-11 1.4E-15 122.0 19.3 60 261-322 227-286 (578)
33 PRK06134 putative FAD-binding 99.3 3E-11 6.6E-16 124.5 16.9 61 261-323 223-283 (581)
34 PRK05945 sdhA succinate dehydr 99.3 3.1E-11 6.7E-16 124.3 17.0 56 261-319 141-198 (575)
35 PTZ00139 Succinate dehydrogena 99.3 2E-11 4.4E-16 126.3 15.6 57 261-319 172-230 (617)
36 PRK09078 sdhA succinate dehydr 99.3 3.5E-11 7.5E-16 124.3 17.0 57 261-319 155-213 (598)
37 PLN00128 Succinate dehydrogena 99.3 4.7E-11 1E-15 123.8 17.8 55 264-320 196-252 (635)
38 PRK08641 sdhA succinate dehydr 99.3 6.1E-11 1.3E-15 122.3 18.4 49 269-319 151-201 (589)
39 PRK12839 hypothetical protein; 99.3 3.3E-11 7.2E-16 123.7 16.0 58 263-321 222-279 (572)
40 PTZ00306 NADH-dependent fumara 99.3 2.3E-11 4.9E-16 134.1 15.7 53 268-321 560-623 (1167)
41 PTZ00383 malate:quinone oxidor 99.3 7.1E-11 1.5E-15 118.8 17.6 54 268-329 228-283 (497)
42 TIGR01373 soxB sarcosine oxida 99.3 3.7E-11 8.1E-16 118.7 15.3 60 263-329 191-250 (407)
43 PRK00711 D-amino acid dehydrog 99.3 7E-11 1.5E-15 117.0 16.7 56 264-327 210-265 (416)
44 COG0579 Predicted dehydrogenas 99.3 1.2E-10 2.6E-15 113.7 17.2 122 201-330 90-222 (429)
45 PRK08626 fumarate reductase fl 99.3 5.7E-11 1.2E-15 123.7 16.0 56 261-319 164-221 (657)
46 TIGR01812 sdhA_frdA_Gneg succi 99.3 4.8E-11 1E-15 122.9 15.0 54 263-319 137-192 (566)
47 TIGR03329 Phn_aa_oxid putative 99.3 6.4E-11 1.4E-15 119.0 14.9 37 21-57 22-59 (460)
48 PRK06854 adenylylsulfate reduc 99.3 1.3E-10 2.8E-15 120.2 17.5 49 267-318 145-195 (608)
49 TIGR01377 soxA_mon sarcosine o 99.3 3E-10 6.4E-15 111.1 19.1 34 24-58 1-34 (380)
50 PRK07057 sdhA succinate dehydr 99.3 1.7E-10 3.7E-15 119.1 18.1 54 264-319 157-212 (591)
51 PRK09231 fumarate reductase fl 99.3 6E-11 1.3E-15 122.2 14.7 52 265-319 144-197 (582)
52 PRK07803 sdhA succinate dehydr 99.3 1.4E-10 3.1E-15 120.4 17.1 47 270-319 166-214 (626)
53 PF03486 HI0933_like: HI0933-l 99.3 5.5E-12 1.2E-16 123.7 5.9 78 261-346 115-192 (409)
54 TIGR00551 nadB L-aspartate oxi 99.3 2.4E-10 5.2E-15 115.6 17.6 56 261-319 134-190 (488)
55 PRK11728 hydroxyglutarate oxid 99.2 1.8E-10 3.8E-15 113.5 16.2 58 263-329 157-214 (393)
56 PRK08275 putative oxidoreducta 99.2 1.8E-10 4E-15 118.2 16.8 58 260-319 142-201 (554)
57 PLN02464 glycerol-3-phosphate 99.2 1.8E-10 3.9E-15 119.5 16.5 62 264-327 241-304 (627)
58 COG0578 GlpA Glycerol-3-phosph 99.2 2.8E-10 6.2E-15 113.3 17.1 76 265-345 174-254 (532)
59 PRK06069 sdhA succinate dehydr 99.2 1.9E-10 4.1E-15 118.6 16.5 51 265-318 148-200 (577)
60 TIGR01320 mal_quin_oxido malat 99.2 4.5E-10 9.7E-15 113.1 18.7 62 264-329 187-250 (483)
61 TIGR01176 fum_red_Fp fumarate 99.2 2.6E-10 5.7E-15 117.3 17.0 51 266-319 144-196 (580)
62 TIGR01811 sdhA_Bsu succinate d 99.2 3.1E-10 6.7E-15 117.3 16.2 51 267-319 145-197 (603)
63 PRK09077 L-aspartate oxidase; 99.2 4.8E-10 1E-14 114.6 16.7 55 264-319 148-208 (536)
64 PRK08071 L-aspartate oxidase; 99.2 6.1E-10 1.3E-14 113.1 17.3 49 268-319 142-191 (510)
65 PRK08205 sdhA succinate dehydr 99.2 6.7E-10 1.4E-14 114.6 17.8 59 260-319 145-207 (583)
66 PRK07512 L-aspartate oxidase; 99.2 3.4E-10 7.3E-15 115.1 15.1 50 266-318 148-197 (513)
67 PRK05257 malate:quinone oxidor 99.2 1.1E-09 2.4E-14 110.5 18.6 62 264-329 192-256 (494)
68 TIGR03364 HpnW_proposed FAD de 99.2 5.5E-10 1.2E-14 108.8 15.7 33 24-57 1-33 (365)
69 PRK11259 solA N-methyltryptoph 99.2 1.2E-09 2.6E-14 106.7 18.2 36 22-58 2-37 (376)
70 TIGR02061 aprA adenosine phosp 99.2 7.5E-10 1.6E-14 114.1 16.7 54 265-319 136-192 (614)
71 PRK13800 putative oxidoreducta 99.2 8E-10 1.7E-14 119.3 17.6 49 268-319 156-206 (897)
72 PRK12266 glpD glycerol-3-phosp 99.2 1.3E-09 2.8E-14 110.7 17.9 40 19-59 2-41 (508)
73 PRK04176 ribulose-1,5-biphosph 99.1 3.9E-10 8.5E-15 104.3 12.2 35 22-57 24-58 (257)
74 PRK13369 glycerol-3-phosphate 99.1 1.1E-09 2.3E-14 111.2 16.3 56 264-324 164-220 (502)
75 PRK13339 malate:quinone oxidor 99.1 3.5E-09 7.6E-14 106.3 19.6 68 259-330 189-258 (497)
76 TIGR00292 thiazole biosynthesi 99.1 3.5E-10 7.7E-15 104.3 11.5 36 22-58 20-55 (254)
77 PLN02661 Putative thiazole syn 99.1 6.7E-10 1.4E-14 105.7 12.2 56 260-318 178-244 (357)
78 PRK08401 L-aspartate oxidase; 99.1 2.1E-09 4.5E-14 108.1 15.0 33 24-57 2-34 (466)
79 PTZ00363 rab-GDP dissociation 99.1 5.3E-09 1.1E-13 103.9 17.3 41 20-61 1-41 (443)
80 PRK10157 putative oxidoreducta 99.1 1.8E-09 3.9E-14 107.4 13.8 36 22-58 4-39 (428)
81 TIGR02485 CobZ_N-term precorri 99.1 3.4E-09 7.3E-14 105.7 15.6 61 261-324 129-189 (432)
82 PF01946 Thi4: Thi4 family; PD 99.0 3.4E-09 7.5E-14 93.1 12.5 36 22-58 16-51 (230)
83 KOG2820|consensus 99.0 6E-09 1.3E-13 96.5 14.0 62 260-326 158-219 (399)
84 PRK13977 myosin-cross-reactive 99.0 2.5E-08 5.4E-13 100.6 18.1 60 261-320 232-295 (576)
85 COG0029 NadB Aspartate oxidase 99.0 1.9E-09 4.2E-14 104.7 9.5 57 259-318 138-196 (518)
86 KOG0042|consensus 99.0 9.3E-10 2E-14 107.3 7.2 82 238-325 210-293 (680)
87 PF12831 FAD_oxidored: FAD dep 99.0 4.6E-10 1E-14 111.6 5.3 62 261-328 96-157 (428)
88 COG0644 FixC Dehydrogenases (f 99.0 3.3E-09 7.1E-14 104.6 11.2 37 22-59 2-38 (396)
89 COG1053 SdhA Succinate dehydro 99.0 6.5E-09 1.4E-13 105.8 13.5 53 264-318 148-202 (562)
90 COG0665 DadA Glycine/D-amino a 99.0 2E-08 4.4E-13 98.3 16.0 38 21-59 2-39 (387)
91 COG1635 THI4 Ribulose 1,5-bisp 99.0 8.6E-09 1.9E-13 90.2 11.6 33 23-56 30-62 (262)
92 PRK01747 mnmC bifunctional tRN 99.0 9.3E-09 2E-13 107.9 14.2 34 23-57 260-293 (662)
93 PRK10015 oxidoreductase; Provi 98.9 5.4E-09 1.2E-13 104.0 10.6 36 22-58 4-39 (429)
94 COG1233 Phytoene dehydrogenase 98.8 7E-09 1.5E-13 104.8 8.3 39 22-61 2-40 (487)
95 COG3380 Predicted NAD/FAD-depe 98.8 3E-08 6.5E-13 89.4 11.2 89 268-363 116-219 (331)
96 COG3573 Predicted oxidoreducta 98.8 2.8E-08 6.1E-13 91.9 11.1 63 261-326 159-236 (552)
97 PRK05192 tRNA uridine 5-carbox 98.8 1.8E-08 4E-13 102.5 10.9 35 21-56 2-36 (618)
98 TIGR02730 carot_isom carotene 98.8 5.7E-08 1.2E-12 98.6 14.1 58 261-324 235-292 (493)
99 KOG2415|consensus 98.8 2E-08 4.3E-13 95.3 9.7 83 256-340 184-280 (621)
100 PRK07364 2-octaprenyl-6-methox 98.8 1.1E-07 2.3E-12 94.3 15.3 39 19-58 14-52 (415)
101 TIGR02734 crtI_fam phytoene de 98.8 9.5E-08 2.1E-12 97.1 13.2 58 261-324 225-282 (502)
102 PRK06185 hypothetical protein; 98.7 1.2E-07 2.5E-12 93.8 12.7 59 266-329 120-178 (407)
103 PF06039 Mqo: Malate:quinone o 98.7 1.4E-06 3.1E-11 84.8 19.4 67 260-330 187-255 (488)
104 KOG1298|consensus 98.7 4.3E-08 9.2E-13 92.3 8.5 56 262-321 155-211 (509)
105 TIGR00275 flavoprotein, HI0933 98.7 3.2E-08 6.9E-13 97.7 7.9 32 27-59 1-32 (400)
106 PRK07208 hypothetical protein; 98.7 3.9E-07 8.5E-12 92.1 15.8 40 20-60 1-40 (479)
107 KOG2844|consensus 98.7 3.2E-07 6.9E-12 91.9 13.9 59 262-328 194-252 (856)
108 TIGR02733 desat_CrtD C-3',4' d 98.7 1.2E-07 2.6E-12 96.1 11.0 60 261-323 238-299 (492)
109 PRK06370 mercuric reductase; V 98.6 1.6E-06 3.6E-11 87.2 18.2 37 20-57 2-38 (463)
110 PF01134 GIDA: Glucose inhibit 98.6 9.4E-08 2E-12 92.5 8.2 49 265-320 106-154 (392)
111 KOG4254|consensus 98.6 7.1E-08 1.5E-12 92.6 7.1 58 261-324 270-327 (561)
112 PLN02172 flavin-containing mon 98.6 2.7E-07 5.9E-12 92.5 11.7 68 257-328 113-183 (461)
113 PRK08244 hypothetical protein; 98.6 3.4E-07 7.5E-12 92.9 12.5 35 23-58 2-36 (493)
114 PRK06416 dihydrolipoamide dehy 98.6 1.4E-06 3E-11 87.7 16.3 35 22-57 3-37 (462)
115 KOG2404|consensus 98.6 4.5E-07 9.8E-12 83.7 11.4 49 268-319 158-207 (477)
116 PLN02985 squalene monooxygenas 98.6 1.3E-06 2.9E-11 88.8 15.8 39 18-57 38-76 (514)
117 KOG2853|consensus 98.6 3.7E-06 8.1E-11 78.3 17.0 45 15-59 78-125 (509)
118 PF13738 Pyr_redox_3: Pyridine 98.6 2.5E-07 5.4E-12 82.2 9.1 62 259-327 86-147 (203)
119 TIGR03378 glycerol3P_GlpB glyc 98.6 3E-06 6.5E-11 83.0 16.7 59 264-326 272-330 (419)
120 PRK06184 hypothetical protein; 98.5 1.9E-06 4.2E-11 87.6 15.6 36 22-58 2-37 (502)
121 KOG2665|consensus 98.5 1.3E-06 2.7E-11 80.6 12.1 40 20-59 45-85 (453)
122 PRK06847 hypothetical protein; 98.5 8.9E-07 1.9E-11 86.4 12.0 36 21-57 2-37 (375)
123 TIGR01988 Ubi-OHases Ubiquinon 98.5 2.1E-06 4.5E-11 84.0 14.1 33 25-58 1-33 (385)
124 TIGR03377 glycerol3P_GlpA glyc 98.5 2.5E-06 5.3E-11 87.1 14.8 61 264-328 137-199 (516)
125 PRK06183 mhpA 3-(3-hydroxyphen 98.5 2.7E-06 5.8E-11 87.3 15.0 37 21-58 8-44 (538)
126 PRK05329 anaerobic glycerol-3- 98.5 7.2E-06 1.6E-10 81.1 17.3 101 261-370 265-371 (422)
127 PRK07333 2-octaprenyl-6-methox 98.5 1.7E-06 3.7E-11 85.3 12.9 35 23-57 1-36 (403)
128 PRK06126 hypothetical protein; 98.5 6.6E-06 1.4E-10 84.6 17.1 36 21-57 5-40 (545)
129 PRK07045 putative monooxygenas 98.5 2.6E-06 5.5E-11 83.7 13.4 37 21-58 3-39 (388)
130 COG0654 UbiH 2-polyprenyl-6-me 98.4 2.4E-06 5.3E-11 83.9 13.0 33 23-56 2-34 (387)
131 PRK08243 4-hydroxybenzoate 3-m 98.4 3.5E-06 7.6E-11 82.9 13.4 34 23-57 2-35 (392)
132 TIGR00136 gidA glucose-inhibit 98.4 2E-06 4.3E-11 87.7 11.7 33 24-57 1-33 (617)
133 PLN02697 lycopene epsilon cycl 98.4 2.3E-06 5E-11 86.9 12.1 35 21-56 106-140 (529)
134 PRK06617 2-octaprenyl-6-methox 98.4 7.2E-06 1.6E-10 80.2 14.9 33 24-57 2-34 (374)
135 PRK05675 sdhA succinate dehydr 98.4 3E-06 6.5E-11 87.4 12.7 57 261-319 132-190 (570)
136 PRK11445 putative oxidoreducta 98.4 9.3E-06 2E-10 78.8 15.2 32 24-57 2-33 (351)
137 PRK08163 salicylate hydroxylas 98.4 9.7E-06 2.1E-10 79.8 15.5 35 22-57 3-37 (396)
138 PRK07190 hypothetical protein; 98.4 5.1E-06 1.1E-10 84.1 13.4 35 22-57 4-38 (487)
139 TIGR02732 zeta_caro_desat caro 98.4 1.7E-06 3.6E-11 87.3 9.9 60 264-324 228-290 (474)
140 PF00743 FMO-like: Flavin-bind 98.4 8.2E-07 1.8E-11 90.4 7.6 35 25-60 3-37 (531)
141 PF13450 NAD_binding_8: NAD(P) 98.3 5.1E-07 1.1E-11 65.6 3.8 32 28-60 1-32 (68)
142 PRK07538 hypothetical protein; 98.3 9.2E-06 2E-10 80.5 13.5 33 24-57 1-33 (413)
143 PRK08132 FAD-dependent oxidore 98.3 1.3E-05 2.9E-10 82.3 15.0 39 18-57 18-56 (547)
144 COG0445 GidA Flavin-dependent 98.3 2E-06 4.4E-11 84.8 7.9 51 266-322 112-162 (621)
145 COG2509 Uncharacterized FAD-de 98.3 7.4E-06 1.6E-10 79.3 11.5 54 263-322 181-234 (486)
146 COG2072 TrkA Predicted flavopr 98.3 4.7E-06 1E-10 83.2 10.2 40 19-59 4-44 (443)
147 TIGR02352 thiamin_ThiO glycine 98.2 1.6E-05 3.4E-10 76.2 12.7 53 263-323 145-197 (337)
148 KOG1399|consensus 98.2 6E-06 1.3E-10 81.9 9.6 39 21-60 4-42 (448)
149 PLN02487 zeta-carotene desatur 98.2 2.1E-05 4.6E-10 80.6 13.8 59 264-323 304-365 (569)
150 PLN00093 geranylgeranyl diphos 98.2 1.2E-06 2.6E-11 87.6 4.6 36 21-57 37-72 (450)
151 PF01494 FAD_binding_3: FAD bi 98.2 1.3E-06 2.7E-11 84.0 4.2 36 23-59 1-36 (356)
152 TIGR02032 GG-red-SF geranylger 98.2 1.5E-06 3.3E-11 81.4 4.4 34 24-58 1-34 (295)
153 TIGR02023 BchP-ChlP geranylger 98.2 1.4E-06 2.9E-11 85.8 3.8 32 24-56 1-32 (388)
154 TIGR01421 gluta_reduc_1 glutat 98.1 2.2E-06 4.7E-11 86.0 4.2 35 22-57 1-35 (450)
155 PRK09126 hypothetical protein; 98.1 2.4E-06 5.2E-11 83.9 4.3 36 22-58 2-37 (392)
156 PRK08773 2-octaprenyl-3-methyl 98.1 3E-06 6.6E-11 83.3 4.7 36 21-57 4-39 (392)
157 PRK08013 oxidoreductase; Provi 98.1 3E-06 6.6E-11 83.6 4.5 36 22-58 2-37 (400)
158 PRK06116 glutathione reductase 98.1 3.1E-06 6.6E-11 84.9 4.5 36 21-57 2-37 (450)
159 PRK08010 pyridine nucleotide-d 98.1 3.1E-06 6.7E-11 84.7 4.4 35 22-57 2-36 (441)
160 TIGR01816 sdhA_forward succina 98.1 4.6E-05 9.9E-10 78.6 13.1 56 261-319 125-182 (565)
161 PRK07494 2-octaprenyl-6-methox 98.1 3.7E-06 8.1E-11 82.5 4.8 36 21-57 5-40 (388)
162 PRK08020 ubiF 2-octaprenyl-3-m 98.1 3.4E-06 7.3E-11 82.9 4.3 36 21-57 3-38 (391)
163 PRK07608 ubiquinone biosynthes 98.1 3.5E-06 7.7E-11 82.6 4.5 37 21-58 3-39 (388)
164 TIGR01424 gluta_reduc_2 glutat 98.1 3.4E-06 7.3E-11 84.5 4.3 33 23-56 2-34 (446)
165 PRK05714 2-octaprenyl-3-methyl 98.0 4.3E-06 9.2E-11 82.6 4.3 34 23-57 2-35 (405)
166 TIGR02028 ChlP geranylgeranyl 98.0 3.7E-06 8E-11 83.0 3.7 33 24-57 1-33 (398)
167 PRK07251 pyridine nucleotide-d 98.0 4.9E-06 1.1E-10 83.1 4.5 35 22-57 2-36 (438)
168 COG0562 Glf UDP-galactopyranos 98.0 6.5E-06 1.4E-10 76.3 4.6 37 23-60 1-37 (374)
169 PRK08849 2-octaprenyl-3-methyl 98.0 5.1E-06 1.1E-10 81.6 4.2 34 23-57 3-36 (384)
170 PTZ00058 glutathione reductase 98.0 6.5E-06 1.4E-10 84.4 4.8 36 21-57 46-81 (561)
171 KOG0029|consensus 98.0 6.2E-06 1.3E-10 83.1 4.5 42 19-61 11-52 (501)
172 PRK08850 2-octaprenyl-6-methox 98.0 5.5E-06 1.2E-10 81.9 4.1 35 21-56 2-36 (405)
173 PRK05976 dihydrolipoamide dehy 98.0 6.2E-06 1.3E-10 83.2 4.4 36 21-57 2-37 (472)
174 KOG2852|consensus 98.0 6.1E-06 1.3E-10 75.2 3.7 102 260-375 153-256 (380)
175 PLN02463 lycopene beta cyclase 98.0 7.1E-06 1.5E-10 81.9 4.5 38 19-57 24-61 (447)
176 COG0492 TrxB Thioredoxin reduc 97.9 6.9E-06 1.5E-10 77.7 3.9 63 261-328 185-248 (305)
177 PRK07818 dihydrolipoamide dehy 97.9 7.8E-06 1.7E-10 82.4 4.4 35 22-57 3-37 (466)
178 TIGR00031 UDP-GALP_mutase UDP- 97.9 8.5E-06 1.8E-10 79.3 4.5 36 24-60 2-37 (377)
179 PRK05249 soluble pyridine nucl 97.9 8.5E-06 1.8E-10 82.0 4.6 37 22-59 4-40 (461)
180 PF04820 Trp_halogenase: Trypt 97.9 6.9E-05 1.5E-09 75.1 10.8 54 257-316 156-209 (454)
181 TIGR03143 AhpF_homolog putativ 97.9 8.6E-06 1.9E-10 83.8 4.2 37 21-58 2-38 (555)
182 PRK06115 dihydrolipoamide dehy 97.9 8.8E-06 1.9E-10 82.0 4.2 34 22-56 2-35 (466)
183 COG3634 AhpF Alkyl hydroperoxi 97.9 0.00011 2.3E-09 68.9 10.8 59 265-326 400-460 (520)
184 PRK06292 dihydrolipoamide dehy 97.9 1E-05 2.2E-10 81.4 4.5 34 22-56 2-35 (460)
185 TIGR01984 UbiH 2-polyprenyl-6- 97.9 1.1E-05 2.3E-10 79.1 4.4 33 25-58 1-34 (382)
186 TIGR01989 COQ6 Ubiquinone bios 97.9 9.1E-06 2E-10 81.2 4.0 33 24-57 1-37 (437)
187 PTZ00367 squalene epoxidase; P 97.9 1.1E-05 2.4E-10 82.8 4.5 38 19-57 29-66 (567)
188 PRK06467 dihydrolipoamide dehy 97.9 1.2E-05 2.5E-10 81.2 4.6 36 21-57 2-37 (471)
189 PRK09897 hypothetical protein; 97.9 0.00024 5.3E-09 72.3 14.0 36 24-59 2-38 (534)
190 TIGR01350 lipoamide_DH dihydro 97.9 1.2E-05 2.5E-10 81.0 4.4 33 23-56 1-33 (461)
191 TIGR01790 carotene-cycl lycope 97.9 1.1E-05 2.3E-10 79.2 4.0 33 25-58 1-33 (388)
192 TIGR01292 TRX_reduct thioredox 97.9 1.1E-05 2.4E-10 75.9 3.9 55 268-326 190-246 (300)
193 PLN02546 glutathione reductase 97.9 1.3E-05 2.7E-10 82.3 4.2 32 23-55 79-110 (558)
194 TIGR02360 pbenz_hydroxyl 4-hyd 97.9 1.2E-05 2.6E-10 79.1 4.0 34 23-57 2-35 (390)
195 PF05834 Lycopene_cycl: Lycope 97.8 1.4E-05 3E-10 78.3 4.3 34 25-59 1-36 (374)
196 PRK06327 dihydrolipoamide dehy 97.8 1.4E-05 3E-10 80.8 4.2 34 21-55 2-35 (475)
197 PRK06834 hypothetical protein; 97.8 1.4E-05 3E-10 81.0 4.2 35 22-57 2-36 (488)
198 PRK05732 2-octaprenyl-6-methox 97.8 1.5E-05 3.2E-10 78.3 4.3 35 22-56 2-38 (395)
199 PLN02268 probable polyamine ox 97.8 1.9E-05 4.2E-10 78.8 5.1 36 25-61 2-37 (435)
200 PRK07236 hypothetical protein; 97.8 1.5E-05 3.2E-10 78.3 4.1 36 21-57 4-39 (386)
201 TIGR02053 MerA mercuric reduct 97.8 1.6E-05 3.5E-10 80.1 4.2 33 24-57 1-33 (463)
202 PRK08294 phenol 2-monooxygenas 97.8 2.2E-05 4.7E-10 82.0 5.2 43 14-57 23-66 (634)
203 PRK11883 protoporphyrinogen ox 97.8 1.7E-05 3.6E-10 79.4 4.1 35 25-60 2-38 (451)
204 PRK14694 putative mercuric red 97.8 1.8E-05 4E-10 79.7 4.3 36 21-57 4-39 (468)
205 PRK07233 hypothetical protein; 97.8 1.9E-05 4.2E-10 78.4 4.3 36 25-61 1-36 (434)
206 COG1249 Lpd Pyruvate/2-oxoglut 97.8 2.2E-05 4.7E-10 78.2 4.5 36 21-57 2-37 (454)
207 PRK13748 putative mercuric red 97.8 2.1E-05 4.6E-10 81.2 4.4 35 22-57 97-131 (561)
208 COG3349 Uncharacterized conser 97.8 2.1E-05 4.5E-10 77.7 4.0 36 25-61 2-37 (485)
209 PTZ00153 lipoamide dehydrogena 97.8 2.2E-05 4.7E-10 81.8 4.3 33 23-56 116-148 (659)
210 PTZ00052 thioredoxin reductase 97.8 2.3E-05 5.1E-10 79.6 4.3 33 23-56 5-37 (499)
211 PRK07588 hypothetical protein; 97.7 2.2E-05 4.9E-10 77.1 3.9 33 24-57 1-33 (391)
212 PRK06753 hypothetical protein; 97.7 2.3E-05 5E-10 76.4 3.9 34 24-58 1-34 (373)
213 PLN02576 protoporphyrinogen ox 97.7 3E-05 6.4E-10 78.8 4.7 43 19-61 8-50 (496)
214 TIGR03197 MnmC_Cterm tRNA U-34 97.7 0.001 2.2E-08 65.2 15.4 53 263-324 143-195 (381)
215 PRK06996 hypothetical protein; 97.7 3.1E-05 6.8E-10 76.4 4.4 36 21-57 9-48 (398)
216 TIGR01789 lycopene_cycl lycope 97.7 3.2E-05 6.9E-10 75.6 4.1 35 25-59 1-36 (370)
217 PLN02507 glutathione reductase 97.7 2.9E-05 6.3E-10 78.9 4.0 34 21-55 23-56 (499)
218 TIGR00562 proto_IX_ox protopor 97.7 3.8E-05 8.1E-10 77.2 4.5 37 24-60 3-42 (462)
219 COG1231 Monoamine oxidase [Ami 97.7 4.8E-05 1E-09 74.0 4.7 39 21-60 5-43 (450)
220 PLN02568 polyamine oxidase 97.6 5.3E-05 1.2E-09 77.5 4.8 40 21-61 3-47 (539)
221 PRK10262 thioredoxin reductase 97.6 4.9E-05 1.1E-09 72.7 3.9 62 263-328 193-257 (321)
222 PF07992 Pyr_redox_2: Pyridine 97.6 5.4E-05 1.2E-09 66.8 3.9 32 25-57 1-32 (201)
223 PRK14727 putative mercuric red 97.6 7.3E-05 1.6E-09 75.6 4.8 39 19-58 12-50 (479)
224 PLN02927 antheraxanthin epoxid 97.6 6.3E-05 1.4E-09 78.1 4.3 37 20-57 78-114 (668)
225 PRK05335 tRNA (uracil-5-)-meth 97.6 6.2E-05 1.3E-09 73.9 3.8 35 24-59 3-37 (436)
226 PRK05868 hypothetical protein; 97.6 6.3E-05 1.4E-09 73.6 3.9 33 25-58 3-35 (372)
227 PF06100 Strep_67kDa_ant: Stre 97.6 0.004 8.8E-08 61.7 16.3 55 264-318 216-274 (500)
228 PRK12416 protoporphyrinogen ox 97.5 6.2E-05 1.4E-09 75.8 3.6 37 25-61 3-44 (463)
229 PLN02676 polyamine oxidase 97.5 9E-05 1.9E-09 75.0 4.6 40 21-61 24-64 (487)
230 TIGR01423 trypano_reduc trypan 97.5 8.7E-05 1.9E-09 75.1 4.3 35 22-56 2-36 (486)
231 PRK15317 alkyl hydroperoxide r 97.5 8.3E-05 1.8E-09 76.0 3.9 57 267-326 399-457 (517)
232 TIGR01438 TGR thioredoxin and 97.5 8.5E-05 1.8E-09 75.2 3.9 33 23-56 2-34 (484)
233 PRK13512 coenzyme A disulfide 97.5 0.00069 1.5E-08 67.8 10.4 33 25-57 3-36 (438)
234 TIGR02731 phytoene_desat phyto 97.5 9.7E-05 2.1E-09 74.1 4.2 51 264-316 222-274 (453)
235 PF13434 K_oxygenase: L-lysine 97.5 0.00052 1.1E-08 66.2 8.7 37 22-58 1-37 (341)
236 COG3075 GlpB Anaerobic glycero 97.4 0.00011 2.4E-09 68.4 3.8 55 264-322 267-321 (421)
237 KOG2311|consensus 97.4 0.00042 9.1E-09 67.6 7.6 34 21-55 26-59 (679)
238 PRK06475 salicylate hydroxylas 97.4 0.00012 2.6E-09 72.2 4.0 32 25-57 4-35 (400)
239 TIGR03140 AhpF alkyl hydropero 97.4 0.00012 2.5E-09 74.8 3.9 56 267-325 400-457 (515)
240 TIGR03315 Se_ygfK putative sel 97.4 0.00014 3.1E-09 78.7 4.6 37 22-59 536-572 (1012)
241 TIGR03452 mycothione_red mycot 97.4 0.00019 4.1E-09 72.1 4.8 50 267-323 221-270 (452)
242 PRK12831 putative oxidoreducta 97.4 0.0002 4.4E-09 72.1 4.9 38 21-59 138-175 (464)
243 COG1232 HemY Protoporphyrinoge 97.3 0.00017 3.8E-09 71.3 3.9 36 25-61 2-39 (444)
244 TIGR01372 soxA sarcosine oxida 97.3 0.00018 3.9E-09 78.9 4.2 62 264-329 360-422 (985)
245 TIGR00137 gid_trmFO tRNA:m(5)U 97.3 0.00019 4E-09 70.9 3.8 34 24-58 1-34 (433)
246 KOG2614|consensus 97.3 0.00021 4.5E-09 68.8 3.9 35 23-58 2-36 (420)
247 PRK07846 mycothione reductase; 97.3 0.00024 5.2E-09 71.3 4.5 50 267-323 218-267 (451)
248 TIGR03219 salicylate_mono sali 97.3 0.00022 4.8E-09 70.7 4.1 33 25-58 2-35 (414)
249 PF00070 Pyr_redox: Pyridine n 97.3 0.00037 8.1E-09 52.1 4.4 33 26-59 2-34 (80)
250 COG1252 Ndh NADH dehydrogenase 97.3 0.011 2.4E-07 57.9 15.5 57 260-327 214-271 (405)
251 PLN02612 phytoene desaturase 97.3 0.00031 6.6E-09 72.6 5.1 39 21-60 91-129 (567)
252 COG1148 HdrA Heterodisulfide r 97.2 0.0003 6.4E-09 68.8 4.2 36 24-60 125-160 (622)
253 PRK12810 gltD glutamate syntha 97.2 0.00034 7.3E-09 70.7 4.8 38 21-59 141-178 (471)
254 PRK12779 putative bifunctional 97.2 0.00027 5.9E-09 76.8 4.3 38 22-60 305-342 (944)
255 TIGR01316 gltA glutamate synth 97.2 0.00035 7.6E-09 70.1 4.7 38 21-59 131-168 (449)
256 PF00996 GDI: GDP dissociation 97.2 0.00032 6.9E-09 69.4 4.2 41 20-61 1-41 (438)
257 PRK06912 acoL dihydrolipoamide 97.2 0.00029 6.2E-09 70.9 4.0 34 25-59 2-35 (458)
258 PLN02529 lysine-specific histo 97.2 0.00035 7.5E-09 73.6 4.4 39 21-60 158-196 (738)
259 PLN02328 lysine-specific histo 97.2 0.00044 9.5E-09 73.3 5.0 39 21-60 236-274 (808)
260 PRK07845 flavoprotein disulfid 97.1 0.00044 9.5E-09 69.7 4.4 32 25-57 3-34 (466)
261 PRK12775 putative trifunctiona 97.1 0.00041 8.8E-09 76.0 4.2 37 22-59 429-465 (1006)
262 PRK12769 putative oxidoreducta 97.1 0.00047 1E-08 72.5 4.5 37 22-59 326-362 (654)
263 PLN02852 ferredoxin-NADP+ redu 97.1 0.00065 1.4E-08 68.5 5.1 41 19-59 22-63 (491)
264 PRK04965 NADH:flavorubredoxin 97.1 0.0068 1.5E-07 59.3 11.9 57 266-329 194-250 (377)
265 PRK12778 putative bifunctional 97.0 0.00059 1.3E-08 72.9 4.6 37 21-58 429-465 (752)
266 PRK09853 putative selenate red 97.0 0.00053 1.2E-08 74.1 4.2 37 22-59 538-574 (1019)
267 KOG0685|consensus 97.0 0.00066 1.4E-08 66.4 4.4 42 21-62 19-60 (498)
268 PRK11749 dihydropyrimidine deh 97.0 0.00061 1.3E-08 68.5 4.4 37 22-59 139-175 (457)
269 KOG4716|consensus 97.0 0.00061 1.3E-08 63.8 3.6 34 21-55 17-50 (503)
270 COG2907 Predicted NAD/FAD-bind 96.9 0.00098 2.1E-08 62.7 4.3 39 21-61 6-44 (447)
271 PRK08255 salicylyl-CoA 5-hydro 96.9 0.00083 1.8E-08 71.8 3.9 34 25-58 2-36 (765)
272 PTZ00188 adrenodoxin reductase 96.9 0.0014 3.1E-08 65.5 5.2 51 8-60 26-76 (506)
273 PRK09754 phenylpropionate diox 96.9 0.011 2.3E-07 58.4 11.4 33 24-57 145-177 (396)
274 PRK15317 alkyl hydroperoxide r 96.8 0.016 3.4E-07 59.3 12.7 32 25-57 353-384 (517)
275 KOG3855|consensus 96.8 0.0016 3.4E-08 62.7 4.8 40 19-58 32-74 (481)
276 TIGR03140 AhpF alkyl hydropero 96.8 0.017 3.7E-07 59.0 12.8 32 25-57 354-385 (515)
277 TIGR01350 lipoamide_DH dihydro 96.8 0.01 2.2E-07 59.7 11.0 33 24-57 171-203 (461)
278 PRK12814 putative NADPH-depend 96.8 0.0014 3E-08 68.8 4.9 37 22-59 192-228 (652)
279 KOG2960|consensus 96.8 0.00055 1.2E-08 60.0 1.5 34 23-56 76-110 (328)
280 TIGR01318 gltD_gamma_fam gluta 96.8 0.0013 2.9E-08 66.2 4.5 37 22-59 140-176 (467)
281 PRK06567 putative bifunctional 96.8 0.001 2.2E-08 71.4 3.7 35 22-57 382-416 (1028)
282 KOG1335|consensus 96.8 0.0012 2.7E-08 62.8 3.9 36 22-58 38-73 (506)
283 TIGR02053 MerA mercuric reduct 96.8 0.0091 2E-07 60.2 10.3 33 24-57 167-199 (463)
284 PLN03000 amine oxidase 96.8 0.0014 3E-08 69.8 4.5 38 22-60 183-220 (881)
285 PRK12770 putative glutamate sy 96.7 0.0017 3.7E-08 63.0 4.8 38 22-60 17-54 (352)
286 PRK07818 dihydrolipoamide dehy 96.7 0.014 3.1E-07 58.8 11.4 59 266-328 224-285 (466)
287 PRK09564 coenzyme A disulfide 96.7 0.015 3.2E-07 58.2 11.5 56 266-329 202-257 (444)
288 PRK12809 putative oxidoreducta 96.6 0.002 4.3E-08 67.6 4.7 37 22-59 309-345 (639)
289 PRK14989 nitrite reductase sub 96.6 0.014 3E-07 63.0 11.1 60 265-329 197-256 (847)
290 TIGR02374 nitri_red_nirB nitri 96.6 0.013 2.9E-07 62.9 11.0 58 265-329 192-249 (785)
291 KOG1276|consensus 96.6 0.0028 6E-08 61.3 5.1 44 19-62 7-51 (491)
292 TIGR01317 GOGAT_sm_gam glutama 96.6 0.0021 4.6E-08 65.1 4.6 36 23-59 143-178 (485)
293 PLN02976 amine oxidase 96.5 0.0022 4.8E-08 71.0 4.2 37 23-60 693-729 (1713)
294 TIGR01316 gltA glutamate synth 96.5 0.032 6.9E-07 56.0 12.0 31 25-56 274-304 (449)
295 PRK12771 putative glutamate sy 96.4 0.0031 6.8E-08 65.2 4.2 38 21-59 135-172 (564)
296 PRK10262 thioredoxin reductase 96.4 0.066 1.4E-06 51.1 13.0 32 25-57 148-179 (321)
297 PRK13984 putative oxidoreducta 96.3 0.0041 9E-08 64.8 4.9 38 21-59 281-318 (604)
298 PRK06115 dihydrolipoamide dehy 96.3 0.027 5.8E-07 56.8 10.5 32 25-57 176-207 (466)
299 KOG0405|consensus 96.3 0.0043 9.2E-08 58.5 3.8 35 21-56 18-52 (478)
300 TIGR01292 TRX_reduct thioredox 96.3 0.074 1.6E-06 49.7 12.5 33 24-57 142-174 (300)
301 PRK06327 dihydrolipoamide dehy 96.2 0.034 7.3E-07 56.3 10.5 52 267-322 236-288 (475)
302 COG0493 GltD NADPH-dependent g 96.1 0.0048 1E-07 61.7 3.6 36 24-60 124-159 (457)
303 PRK09754 phenylpropionate diox 96.0 0.0065 1.4E-07 59.9 4.1 62 260-329 191-252 (396)
304 PRK09564 coenzyme A disulfide 96.0 0.0059 1.3E-07 61.1 3.8 35 25-59 2-37 (444)
305 PRK12831 putative oxidoreducta 95.8 0.096 2.1E-06 52.8 11.7 31 25-56 283-313 (464)
306 PTZ00318 NADH dehydrogenase-li 95.7 0.011 2.4E-07 58.9 4.3 38 21-59 8-45 (424)
307 TIGR01438 TGR thioredoxin and 95.7 0.06 1.3E-06 54.6 9.7 54 266-323 231-284 (484)
308 KOG1800|consensus 95.6 0.014 3E-07 55.8 4.2 36 24-59 21-57 (468)
309 KOG4405|consensus 95.5 0.015 3.1E-07 56.1 4.1 41 19-60 4-44 (547)
310 KOG1439|consensus 95.5 0.0098 2.1E-07 57.1 2.9 40 20-60 1-40 (440)
311 KOG0399|consensus 95.3 0.022 4.7E-07 61.2 4.8 42 19-61 1781-1822(2142)
312 TIGR03862 flavo_PP4765 unchara 95.1 0.096 2.1E-06 51.1 8.4 111 216-346 57-167 (376)
313 PRK04965 NADH:flavorubredoxin 95.0 0.022 4.8E-07 55.7 3.9 35 24-58 3-38 (377)
314 TIGR03169 Nterm_to_SelD pyridi 95.0 0.03 6.5E-07 54.4 4.6 35 25-59 1-37 (364)
315 PF02558 ApbA: Ketopantoate re 94.9 0.029 6.3E-07 47.1 3.9 31 26-57 1-31 (151)
316 COG0446 HcaD Uncharacterized N 94.9 0.025 5.4E-07 55.4 4.0 38 23-61 136-173 (415)
317 COG1206 Gid NAD(FAD)-utilizing 94.9 0.026 5.6E-07 53.0 3.5 34 24-58 4-37 (439)
318 PF13454 NAD_binding_9: FAD-NA 94.8 0.026 5.6E-07 48.0 3.3 32 27-58 1-36 (156)
319 COG5044 MRS6 RAB proteins gera 94.8 0.04 8.6E-07 52.6 4.5 37 23-60 6-42 (434)
320 PF13434 K_oxygenase: L-lysine 94.6 0.82 1.8E-05 44.1 13.5 40 20-59 187-227 (341)
321 TIGR01372 soxA sarcosine oxida 94.5 0.32 6.9E-06 53.8 11.5 32 24-56 318-350 (985)
322 KOG2403|consensus 94.2 0.11 2.4E-06 52.1 6.3 35 21-56 53-87 (642)
323 KOG2755|consensus 94.2 0.034 7.3E-07 50.7 2.5 34 26-59 2-36 (334)
324 KOG3851|consensus 94.1 0.046 1E-06 51.2 3.4 41 17-57 33-74 (446)
325 PF01210 NAD_Gly3P_dh_N: NAD-d 94.1 0.049 1.1E-06 46.3 3.3 31 26-57 2-32 (157)
326 COG0569 TrkA K+ transport syst 94.0 0.058 1.3E-06 48.9 3.7 33 25-58 2-34 (225)
327 PRK05708 2-dehydropantoate 2-r 93.8 0.063 1.4E-06 51.0 3.9 33 24-57 3-35 (305)
328 KOG1336|consensus 93.8 0.38 8.3E-06 47.5 9.1 56 265-325 265-320 (478)
329 PF02737 3HCDH_N: 3-hydroxyacy 93.4 0.085 1.8E-06 46.0 3.6 31 26-57 2-32 (180)
330 KOG0404|consensus 93.3 0.071 1.5E-06 47.5 3.0 62 260-324 198-261 (322)
331 PRK05976 dihydrolipoamide dehy 93.3 0.084 1.8E-06 53.3 4.1 34 25-59 182-215 (472)
332 PF03721 UDPG_MGDP_dh_N: UDP-g 93.2 0.098 2.1E-06 45.8 3.7 32 25-57 2-33 (185)
333 PRK07251 pyridine nucleotide-d 93.2 0.095 2.1E-06 52.4 4.1 34 25-59 159-192 (438)
334 PRK06249 2-dehydropantoate 2-r 92.8 0.13 2.8E-06 49.0 4.2 33 24-57 6-38 (313)
335 PRK07846 mycothione reductase; 92.6 0.13 2.8E-06 51.7 4.2 35 24-59 167-201 (451)
336 PRK06467 dihydrolipoamide dehy 92.6 0.12 2.6E-06 52.2 4.0 35 25-60 176-210 (471)
337 PRK06912 acoL dihydrolipoamide 92.6 0.13 2.8E-06 51.7 4.2 34 25-59 172-205 (458)
338 PF01593 Amino_oxidase: Flavin 92.5 0.099 2.1E-06 51.1 3.2 44 266-316 220-263 (450)
339 TIGR01421 gluta_reduc_1 glutat 92.5 0.13 2.8E-06 51.7 4.0 34 25-59 168-201 (450)
340 COG4529 Uncharacterized protei 92.4 0.15 3.3E-06 50.6 4.1 36 24-59 2-39 (474)
341 COG1249 Lpd Pyruvate/2-oxoglut 92.3 0.16 3.4E-06 50.9 4.3 36 25-61 175-210 (454)
342 PRK06370 mercuric reductase; V 92.1 0.16 3.4E-06 51.2 4.1 36 24-60 172-207 (463)
343 PRK12921 2-dehydropantoate 2-r 92.0 0.15 3.3E-06 48.1 3.6 30 25-55 2-31 (305)
344 TIGR02374 nitri_red_nirB nitri 92.0 0.15 3.2E-06 55.0 3.9 34 26-59 1-36 (785)
345 PRK01438 murD UDP-N-acetylmura 91.9 0.21 4.6E-06 50.5 4.8 32 25-57 18-49 (480)
346 PRK06522 2-dehydropantoate 2-r 91.9 0.17 3.7E-06 47.6 3.9 31 25-56 2-32 (304)
347 PRK13512 coenzyme A disulfide 91.9 0.16 3.6E-06 50.7 3.9 34 25-59 150-183 (438)
348 PRK06416 dihydrolipoamide dehy 91.9 0.18 3.8E-06 50.8 4.2 34 25-59 174-207 (462)
349 TIGR03385 CoA_CoA_reduc CoA-di 91.9 0.17 3.7E-06 50.3 4.0 34 25-59 139-172 (427)
350 PRK06129 3-hydroxyacyl-CoA deh 91.9 0.16 3.4E-06 48.3 3.6 32 25-57 4-35 (308)
351 PRK05249 soluble pyridine nucl 91.7 0.19 4.1E-06 50.5 4.2 34 25-59 177-210 (461)
352 TIGR02731 phytoene_desat phyto 91.6 0.36 7.9E-06 48.3 6.1 35 25-60 1-35 (453)
353 PRK14989 nitrite reductase sub 91.6 0.2 4.3E-06 54.3 4.3 35 25-59 5-42 (847)
354 PRK06292 dihydrolipoamide dehy 91.4 0.22 4.7E-06 50.1 4.1 34 25-59 171-204 (460)
355 TIGR03452 mycothione_red mycot 91.2 0.22 4.8E-06 50.0 4.1 34 25-59 171-204 (452)
356 PRK02705 murD UDP-N-acetylmura 91.1 0.22 4.7E-06 50.1 3.8 32 26-58 3-34 (459)
357 TIGR01424 gluta_reduc_2 glutat 90.9 0.26 5.6E-06 49.4 4.1 34 25-59 168-201 (446)
358 PF02254 TrkA_N: TrkA-N domain 90.8 0.3 6.6E-06 38.8 3.7 31 26-57 1-31 (116)
359 PRK07066 3-hydroxybutyryl-CoA 90.8 0.27 5.8E-06 47.0 3.9 32 25-57 9-40 (321)
360 PRK15116 sulfur acceptor prote 90.7 0.18 3.8E-06 46.9 2.6 47 11-58 16-65 (268)
361 COG1004 Ugd Predicted UDP-gluc 90.7 0.26 5.6E-06 47.7 3.7 32 25-57 2-33 (414)
362 PRK08229 2-dehydropantoate 2-r 90.7 0.25 5.5E-06 47.5 3.7 32 25-57 4-35 (341)
363 PTZ00153 lipoamide dehydrogena 90.6 0.29 6.2E-06 51.5 4.2 35 25-60 314-348 (659)
364 PRK08293 3-hydroxybutyryl-CoA 90.5 0.29 6.3E-06 46.0 3.9 32 25-57 5-36 (287)
365 PRK14106 murD UDP-N-acetylmura 90.5 0.28 6.1E-06 49.1 4.0 33 24-57 6-38 (450)
366 COG1252 Ndh NADH dehydrogenase 90.3 0.19 4.2E-06 49.3 2.6 38 23-60 155-204 (405)
367 PRK09260 3-hydroxybutyryl-CoA 90.3 0.28 6.1E-06 46.1 3.6 32 25-57 3-34 (288)
368 PRK07819 3-hydroxybutyryl-CoA 90.3 0.31 6.8E-06 45.8 3.9 33 25-58 7-39 (286)
369 PRK04148 hypothetical protein; 90.3 0.29 6.3E-06 40.3 3.2 33 24-58 18-50 (134)
370 PRK06116 glutathione reductase 90.3 0.32 6.9E-06 48.8 4.2 34 25-59 169-202 (450)
371 PRK07845 flavoprotein disulfid 90.3 0.33 7.1E-06 49.0 4.3 35 25-60 179-213 (466)
372 KOG3923|consensus 90.1 0.32 6.9E-06 45.3 3.6 33 23-55 3-41 (342)
373 PRK06718 precorrin-2 dehydroge 90.0 0.35 7.6E-06 43.0 3.7 31 24-55 11-41 (202)
374 TIGR03143 AhpF_homolog putativ 90.0 0.32 7E-06 50.2 4.0 35 24-59 144-178 (555)
375 PF13241 NAD_binding_7: Putati 90.0 0.29 6.2E-06 38.4 2.8 33 23-56 7-39 (103)
376 PTZ00058 glutathione reductase 89.9 0.32 7E-06 50.2 3.9 35 24-59 238-272 (561)
377 COG1748 LYS9 Saccharopine dehy 89.9 0.36 7.7E-06 47.1 3.9 32 25-57 3-35 (389)
378 PRK08010 pyridine nucleotide-d 89.8 0.37 8.1E-06 48.2 4.3 35 25-60 160-194 (441)
379 PLN02507 glutathione reductase 89.8 0.35 7.6E-06 49.3 4.1 34 25-59 205-238 (499)
380 TIGR02354 thiF_fam2 thiamine b 89.8 0.37 8E-06 42.8 3.7 34 22-56 20-54 (200)
381 PRK06719 precorrin-2 dehydroge 89.7 0.39 8.5E-06 40.8 3.7 30 24-54 14-43 (157)
382 PF01488 Shikimate_DH: Shikima 89.4 0.4 8.7E-06 39.6 3.4 33 23-56 12-45 (135)
383 PRK07530 3-hydroxybutyryl-CoA 89.2 0.47 1E-05 44.7 4.2 32 25-57 6-37 (292)
384 PLN02546 glutathione reductase 89.2 0.42 9E-06 49.4 4.1 34 25-59 254-287 (558)
385 PRK06035 3-hydroxyacyl-CoA deh 89.2 0.42 9E-06 45.0 3.8 32 25-57 5-36 (291)
386 PRK14620 NAD(P)H-dependent gly 88.9 0.43 9.2E-06 45.7 3.8 32 25-57 2-33 (326)
387 PRK13748 putative mercuric red 88.8 0.43 9.4E-06 49.3 4.0 32 25-57 272-303 (561)
388 PRK07688 thiamine/molybdopteri 88.8 0.47 1E-05 45.8 3.9 36 21-57 22-58 (339)
389 PRK12475 thiamine/molybdopteri 88.7 0.44 9.5E-06 45.9 3.7 34 23-57 24-58 (338)
390 PF00899 ThiF: ThiF family; I 88.6 0.47 1E-05 39.1 3.3 34 24-58 3-37 (135)
391 PRK14694 putative mercuric red 88.6 0.52 1.1E-05 47.5 4.3 32 25-57 180-211 (468)
392 PRK12770 putative glutamate sy 88.4 0.45 9.7E-06 46.0 3.6 32 25-57 174-206 (352)
393 PRK05808 3-hydroxybutyryl-CoA 88.4 0.46 9.9E-06 44.5 3.5 32 25-57 5-36 (282)
394 PRK14727 putative mercuric red 88.3 0.5 1.1E-05 47.9 3.9 32 25-57 190-221 (479)
395 cd01483 E1_enzyme_family Super 88.3 0.56 1.2E-05 39.0 3.6 31 26-57 2-33 (143)
396 TIGR01470 cysG_Nterm siroheme 88.3 0.53 1.2E-05 41.9 3.6 30 25-55 11-40 (205)
397 PRK14618 NAD(P)H-dependent gly 88.3 0.6 1.3E-05 44.7 4.3 32 25-57 6-37 (328)
398 cd01075 NAD_bind_Leu_Phe_Val_D 88.0 0.58 1.3E-05 41.5 3.7 32 24-56 29-60 (200)
399 PTZ00052 thioredoxin reductase 87.9 0.51 1.1E-05 48.1 3.7 31 25-56 184-214 (499)
400 cd01080 NAD_bind_m-THF_DH_Cycl 87.8 0.78 1.7E-05 39.5 4.3 35 21-56 42-77 (168)
401 COG1893 ApbA Ketopantoate redu 87.8 0.51 1.1E-05 44.8 3.4 33 25-58 2-34 (307)
402 PTZ00318 NADH dehydrogenase-li 87.8 0.59 1.3E-05 46.5 4.0 35 25-59 175-222 (424)
403 COG3486 IucD Lysine/ornithine 87.6 0.77 1.7E-05 44.7 4.4 40 20-59 2-41 (436)
404 TIGR01423 trypano_reduc trypan 87.6 0.64 1.4E-05 47.2 4.2 35 25-60 189-226 (486)
405 cd01487 E1_ThiF_like E1_ThiF_l 87.5 0.66 1.4E-05 40.2 3.7 31 26-57 2-33 (174)
406 PRK06130 3-hydroxybutyryl-CoA 87.3 0.65 1.4E-05 44.1 3.8 32 25-57 6-37 (311)
407 TIGR01763 MalateDH_bact malate 87.2 0.67 1.5E-05 44.0 3.9 31 25-56 3-34 (305)
408 TIGR00518 alaDH alanine dehydr 87.2 0.64 1.4E-05 45.4 3.8 33 23-56 167-199 (370)
409 TIGR03026 NDP-sugDHase nucleot 87.1 0.7 1.5E-05 45.8 4.1 32 25-57 2-33 (411)
410 PLN02545 3-hydroxybutyryl-CoA 87.0 0.7 1.5E-05 43.5 3.9 32 25-57 6-37 (295)
411 cd05292 LDH_2 A subgroup of L- 86.8 0.74 1.6E-05 43.8 3.9 32 25-57 2-35 (308)
412 TIGR02356 adenyl_thiF thiazole 86.8 0.74 1.6E-05 40.9 3.7 36 21-57 19-55 (202)
413 PLN02612 phytoene desaturase 86.7 1.1 2.4E-05 46.4 5.4 47 265-316 318-364 (567)
414 PRK00094 gpsA NAD(P)H-dependen 86.5 0.76 1.6E-05 43.7 3.9 32 25-57 3-34 (325)
415 PRK11064 wecC UDP-N-acetyl-D-m 86.5 0.75 1.6E-05 45.7 3.9 33 25-58 5-37 (415)
416 PRK12549 shikimate 5-dehydroge 86.1 0.81 1.8E-05 43.0 3.7 33 24-57 128-161 (284)
417 PF01262 AlaDh_PNT_C: Alanine 86.0 0.93 2E-05 38.9 3.8 35 22-57 19-53 (168)
418 PRK14619 NAD(P)H-dependent gly 85.5 0.94 2E-05 43.0 3.9 34 24-58 5-38 (308)
419 TIGR03736 PRTRC_ThiF PRTRC sys 85.5 0.67 1.4E-05 42.4 2.7 37 21-57 9-55 (244)
420 PRK07233 hypothetical protein; 85.2 1.4 3E-05 43.6 5.1 53 264-323 207-259 (434)
421 cd05311 NAD_bind_2_malic_enz N 85.1 0.85 1.8E-05 41.3 3.3 34 24-58 26-62 (226)
422 COG2072 TrkA Predicted flavopr 85.0 1 2.3E-05 45.1 4.2 34 25-59 177-210 (443)
423 TIGR01915 npdG NADPH-dependent 84.8 1.1 2.4E-05 40.2 3.9 32 25-57 2-34 (219)
424 PRK12548 shikimate 5-dehydroge 84.8 0.96 2.1E-05 42.6 3.6 32 25-57 128-160 (289)
425 cd00401 AdoHcyase S-adenosyl-L 84.3 1.1 2.5E-05 44.2 3.9 36 22-58 201-236 (413)
426 TIGR02355 moeB molybdopterin s 84.2 1.2 2.7E-05 40.6 4.0 36 22-58 23-59 (240)
427 PRK08328 hypothetical protein; 84.1 1.1 2.5E-05 40.6 3.6 35 22-57 26-61 (231)
428 PRK07531 bifunctional 3-hydrox 84.0 1.1 2.4E-05 45.5 3.9 32 25-57 6-37 (495)
429 cd05191 NAD_bind_amino_acid_DH 84.0 1.6 3.4E-05 32.8 3.8 34 22-55 22-55 (86)
430 PRK02472 murD UDP-N-acetylmura 83.9 1.1 2.3E-05 44.9 3.7 32 25-57 7-38 (447)
431 PRK08644 thiamine biosynthesis 83.8 1.2 2.6E-05 39.9 3.6 35 22-57 27-62 (212)
432 PF13478 XdhC_C: XdhC Rossmann 83.5 1.5 3.1E-05 36.4 3.7 31 26-57 1-31 (136)
433 PRK11749 dihydropyrimidine deh 83.5 1.2 2.6E-05 44.7 3.9 33 24-57 274-307 (457)
434 cd05291 HicDH_like L-2-hydroxy 83.5 1.3 2.9E-05 42.0 4.0 32 26-58 3-36 (306)
435 PRK08268 3-hydroxy-acyl-CoA de 83.5 1.2 2.6E-05 45.4 3.9 33 25-58 9-41 (507)
436 TIGR02279 PaaC-3OHAcCoADH 3-hy 83.5 1.4 3E-05 45.0 4.3 32 25-57 7-38 (503)
437 PLN02353 probable UDP-glucose 83.4 1.2 2.7E-05 44.8 3.9 33 25-57 3-36 (473)
438 PRK11730 fadB multifunctional 83.4 1.2 2.6E-05 47.5 3.9 32 25-57 315-346 (715)
439 PRK05690 molybdopterin biosynt 83.3 1.4 3E-05 40.4 3.9 35 22-57 31-66 (245)
440 COG0686 Ald Alanine dehydrogen 83.3 1.3 2.8E-05 41.7 3.6 35 22-57 167-201 (371)
441 PRK07417 arogenate dehydrogena 83.1 1.2 2.7E-05 41.5 3.5 32 25-57 2-33 (279)
442 TIGR02437 FadB fatty oxidation 83.0 1.3 2.7E-05 47.3 3.9 32 25-57 315-346 (714)
443 PLN02172 flavin-containing mon 82.9 1.3 2.7E-05 44.8 3.7 33 25-58 206-238 (461)
444 PRK12810 gltD glutamate syntha 82.9 2.9 6.3E-05 42.2 6.4 61 265-328 339-411 (471)
445 TIGR02853 spore_dpaA dipicolin 82.7 1.4 3E-05 41.5 3.7 33 24-57 152-184 (287)
446 COG1250 FadB 3-hydroxyacyl-CoA 82.6 1.4 3E-05 41.7 3.6 32 25-57 5-36 (307)
447 cd00757 ThiF_MoeB_HesA_family 82.5 1.4 3.1E-05 39.8 3.6 35 22-57 20-55 (228)
448 PRK08017 oxidoreductase; Provi 82.5 1.6 3.5E-05 39.6 4.1 31 26-57 5-36 (256)
449 cd01485 E1-1_like Ubiquitin ac 82.3 1.6 3.5E-05 38.6 3.8 36 21-57 17-53 (198)
450 TIGR00507 aroE shikimate 5-deh 82.1 1.6 3.5E-05 40.5 3.9 33 24-57 118-150 (270)
451 COG3634 AhpF Alkyl hydroperoxi 82.0 1.2 2.6E-05 42.6 2.8 35 23-58 354-388 (520)
452 PLN02520 bifunctional 3-dehydr 82.0 1.4 3.1E-05 45.1 3.8 31 25-56 381-411 (529)
453 cd01486 Apg7 Apg7 is an E1-lik 81.9 1.6 3.5E-05 41.1 3.7 32 26-58 2-34 (307)
454 PRK09496 trkA potassium transp 81.9 1.5 3.2E-05 43.9 3.8 32 25-57 2-33 (453)
455 cd01492 Aos1_SUMO Ubiquitin ac 81.8 1.7 3.8E-05 38.4 3.8 36 21-57 19-55 (197)
456 PRK08223 hypothetical protein; 81.8 1.6 3.4E-05 41.0 3.6 36 21-57 25-61 (287)
457 PF03446 NAD_binding_2: NAD bi 81.7 1.7 3.7E-05 37.0 3.6 32 25-57 3-34 (163)
458 cd01339 LDH-like_MDH L-lactate 81.6 1.4 3.1E-05 41.6 3.4 32 26-58 1-33 (300)
459 cd01484 E1-2_like Ubiquitin ac 81.4 1.7 3.6E-05 39.6 3.6 32 26-58 2-34 (234)
460 cd01490 Ube1_repeat2 Ubiquitin 81.2 1.6 3.4E-05 43.5 3.5 32 26-58 2-39 (435)
461 PF03807 F420_oxidored: NADP o 81.1 2.3 4.9E-05 32.4 3.8 31 26-57 2-36 (96)
462 TIGR01381 E1_like_apg7 E1-like 80.9 1.7 3.7E-05 45.1 3.8 36 23-59 338-374 (664)
463 PF00670 AdoHcyase_NAD: S-aden 80.7 1.6 3.6E-05 37.1 3.1 35 22-57 22-56 (162)
464 cd01078 NAD_bind_H4MPT_DH NADP 80.7 2 4.3E-05 37.6 3.8 32 24-56 29-61 (194)
465 PRK06223 malate dehydrogenase; 80.5 2 4.4E-05 40.7 4.0 32 25-57 4-36 (307)
466 TIGR00936 ahcY adenosylhomocys 80.4 2 4.4E-05 42.4 4.0 36 21-57 193-228 (406)
467 PRK00258 aroE shikimate 5-dehy 80.4 1.9 4.1E-05 40.3 3.7 33 24-57 124-157 (278)
468 TIGR02441 fa_ox_alpha_mit fatt 80.2 1.7 3.6E-05 46.6 3.6 32 25-57 337-368 (737)
469 PTZ00082 L-lactate dehydrogena 79.9 2.7 5.8E-05 40.2 4.7 36 22-58 5-41 (321)
470 PRK08306 dipicolinate synthase 79.9 2.1 4.5E-05 40.4 3.9 34 23-57 152-185 (296)
471 PRK10669 putative cation:proto 79.9 1.7 3.7E-05 44.9 3.5 34 23-57 417-450 (558)
472 cd01488 Uba3_RUB Ubiquitin act 79.7 2 4.4E-05 40.4 3.6 31 26-57 2-33 (291)
473 KOG2495|consensus 79.6 1.1 2.3E-05 44.0 1.8 31 26-57 221-265 (491)
474 PRK08762 molybdopterin biosynt 79.5 2.1 4.6E-05 41.9 3.9 35 22-57 134-169 (376)
475 PRK12778 putative bifunctional 79.4 1.8 3.9E-05 46.5 3.6 32 25-57 572-604 (752)
476 TIGR01505 tartro_sem_red 2-hyd 79.1 1.9 4.1E-05 40.5 3.3 31 26-57 2-32 (291)
477 PRK01710 murD UDP-N-acetylmura 79.1 2.1 4.6E-05 43.0 3.9 32 25-57 16-47 (458)
478 cd00755 YgdL_like Family of ac 79.0 2.2 4.7E-05 38.8 3.5 35 22-57 10-45 (231)
479 PRK06057 short chain dehydroge 79.0 2.5 5.3E-05 38.5 4.0 32 25-57 9-41 (255)
480 PRK07326 short chain dehydroge 79.0 2.6 5.5E-05 37.8 4.0 32 25-57 8-40 (237)
481 cd01489 Uba2_SUMO Ubiquitin ac 78.9 2 4.2E-05 40.9 3.3 32 26-58 2-34 (312)
482 COG3075 GlpB Anaerobic glycero 78.9 1.8 3.8E-05 41.2 2.9 36 23-59 2-37 (421)
483 PRK06505 enoyl-(acyl carrier p 78.8 2.6 5.6E-05 39.1 4.1 31 25-56 9-42 (271)
484 PRK09424 pntA NAD(P) transhydr 78.6 2.2 4.8E-05 43.4 3.8 35 22-57 164-198 (509)
485 PRK07831 short chain dehydroge 78.6 2.6 5.6E-05 38.5 4.0 33 24-57 18-52 (262)
486 PRK04308 murD UDP-N-acetylmura 78.6 2.5 5.3E-05 42.3 4.1 33 25-58 7-39 (445)
487 PRK05476 S-adenosyl-L-homocyst 78.5 2.4 5.2E-05 42.1 3.9 34 23-57 212-245 (425)
488 PRK00066 ldh L-lactate dehydro 78.4 2.6 5.6E-05 40.2 4.0 33 24-57 7-41 (315)
489 COG2085 Predicted dinucleotide 78.3 2.4 5.2E-05 37.7 3.4 30 26-56 4-33 (211)
490 PRK08177 short chain dehydroge 78.3 3 6.5E-05 37.2 4.2 32 26-58 4-36 (225)
491 PRK15057 UDP-glucose 6-dehydro 78.2 2.3 5E-05 41.8 3.7 32 25-58 2-33 (388)
492 PRK12550 shikimate 5-dehydroge 78.1 2.3 5.1E-05 39.6 3.5 32 25-57 124-156 (272)
493 TIGR01809 Shik-DH-AROM shikima 78.1 2.5 5.5E-05 39.6 3.8 32 24-56 126-158 (282)
494 PRK11154 fadJ multifunctional 78.1 2.3 4.9E-05 45.4 3.9 32 25-57 311-343 (708)
495 PRK09496 trkA potassium transp 78.1 2.4 5.2E-05 42.4 3.9 34 23-57 231-264 (453)
496 TIGR01318 gltD_gamma_fam gluta 78.0 5.3 0.00012 40.3 6.4 61 266-328 331-409 (467)
497 PRK05562 precorrin-2 dehydroge 77.8 2.7 5.9E-05 37.9 3.7 30 24-54 26-55 (223)
498 PRK05600 thiamine biosynthesis 77.8 2.6 5.5E-05 41.2 3.8 36 22-58 40-76 (370)
499 TIGR03376 glycerol3P_DH glycer 77.6 2.6 5.7E-05 40.7 3.8 30 25-55 1-38 (342)
500 PRK07774 short chain dehydroge 77.5 2.9 6.3E-05 37.7 4.0 32 25-57 8-40 (250)
No 1
>KOG1238|consensus
Probab=100.00 E-value=5.2e-56 Score=437.50 Aligned_cols=321 Identities=45% Similarity=0.817 Sum_probs=291.6
Q ss_pred CCCCcccEEEECCCchHHHHHhHhhcCCCceEEEEecCCCCCccccchhhhccccCCCCccccccccCCccccCCCCCee
Q psy10417 19 RLLDEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDEDRIFTDLVLISHYYQFTPYNWGFKTTPQKNACLGLPNNQC 98 (385)
Q Consensus 19 ~~~~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (385)
....+||+||||||.|||++|.+|+|.+..+|||||+|+......+.|.....++.+.++|.|.+.|+...|..+.+..+
T Consensus 53 ~~~~~yDyIVVGgGtAGcvlAarLSEn~~~~VLLLEaGg~~~~~~~~p~~~~~~q~s~~dw~y~t~Ps~~ac~~m~~~~c 132 (623)
T KOG1238|consen 53 ELDSSYDYIVVGGGTAGCVLAARLSENPNWSVLLLEAGGDPPLYSDPPLLAANLQLSLYDWSYHTEPSQHACLAMSEDRC 132 (623)
T ss_pred ccccCCCEEEECCCchhHHHHHhhccCCCceEEEEecCCCCcccccchHHHHHhccccccccCcCccChhhhhhhcCCce
Confidence 35678999999999999999999999888999999999988777788877777888999999999999999999999999
Q ss_pred eecCcceecccccccCcEEecCChhhHHHHHhcCCCCCChhhHHHHHHHHhhccCCCCCcccccccccCccccccCCccc
Q psy10417 99 LWPQGKGVGGSTIINGNIFTRGFPNDFNEWESLGNTGWSFDDVLKYFKKFERINIPELNSDTVYHNTNGLLNVEYSPYKS 178 (385)
Q Consensus 99 ~~~~g~~lGG~s~~~~~~~~r~~~~d~~~~~~~~~~~w~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (385)
.|+||+++||+|.+|+|++.|.+..||+.|.+.++.+|+|+++++||+++|........
T Consensus 133 ~wpRGrVLGGsS~iN~m~Y~RG~r~Dyd~W~~~gnpgW~y~~vl~yf~k~E~~~~~~~~--------------------- 191 (623)
T KOG1238|consen 133 YWPRGRVLGGSSVLNAMFYVRGNRRDYDRWAAEGNPGWSYDEVLPYFKKSEDKVVPDPE--------------------- 191 (623)
T ss_pred ecCccceecccccccceEEecCCccchHHHHHhcCCCCCHHHHHHHHHHHhhccCCCcc---------------------
Confidence 99999999999999999999999999999999999999999999999999987654322
Q ss_pred cchhhhhhccccCCCCcccCCCcceEeeeCCCCchHHHHHHHHHHHcCCCCCCCCCCCCCceeeeeeccccCCcccchhH
Q psy10417 179 KLSDIFLKVGLFNSDTVYHNTNGLLNVEYSPYKSKLSDIFLKSSKELGYTNIDYNNPNTKIGFSIVQSTIKNGRRMTASK 258 (385)
Q Consensus 179 ~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~g~~~~~~~~~~g~r~~~~~ 258 (385)
..++++..++..+....+..+....+.++.+++|....|+||.. ..|+.....+.+++.|.++..
T Consensus 192 --------------~~~y~~~~g~~~ve~~~~~~~~~~~~~~ag~e~G~~~~D~nG~~-~tg~~~l~~t~~~g~R~s~~~ 256 (623)
T KOG1238|consen 192 --------------LTPYHGAGGPLLVEAGVYPNNLFTAFHRAGTEIGGSIFDRNGER-HTGASLLQYTIRNGIRVSLAK 256 (623)
T ss_pred --------------cCcccccCCcceeccccccCchhhHhHHhHHhcCCCccCCCCcc-ccchhhhhccccCCEEEEehh
Confidence 34478888888888888889999999999999998889999998 899998899999999999999
Q ss_pred Hhhhhhcc-CCCeEEEeCcEEEEEEEcCCCCeEEEEEEEeC-CeEEEEEeCcEEEEcCCCcccHHHHHHcCCCChhhhhh
Q psy10417 259 AYLKPIID-RTNLHVIKNSRVVKIIIDPISKQAKGVELVKN-GHKRSVFARKEVIVSSGAFNSPKLLMLSGVGPREHLTE 336 (385)
Q Consensus 259 ~~l~~~~~-~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~~-g~~~~i~a~k~VVlAaGa~~tp~LL~~Sgig~~~~l~~ 336 (385)
+|+.++.. ++|+.+..++.|++|.+|..+.+++||++.+. ++.++++|+|+||||||||+||+|||+|||||.++|++
T Consensus 257 a~l~~~~~~R~NL~~~~~~~vtrvl~D~~~~~a~gv~~~~~~~~~~~v~a~kEVILSAGAi~SPQLLMLSGIGP~~~L~~ 336 (623)
T KOG1238|consen 257 AYLKPIRLTRPNLHISRNAAVTRVLIDPAGKRAKGVEFVRDGGKEHTVKARKEVILSAGAINSPQLLMLSGIGPADHLKK 336 (623)
T ss_pred hhhhhhhccCccccccccceEEEEEEcCCCceEEEEEEEecCceeeeecccceEEEeccccCCHHHHHHcCCCcHHHHHh
Confidence 99998877 88999999999999999988889999999988 89999999999999999999999999999999999999
Q ss_pred cCCCcccccc-chhhhhhccCCCceEEEEcCCccchhhhhh
Q psy10417 337 LGIPVVQDLR-VGDNLMEHVAYSALTFGINKTFSVVTKRLL 376 (385)
Q Consensus 337 ~gi~~~~~~p-vG~~l~dh~~~~~~~~~~~~~~~~~~~~~~ 376 (385)
+|||++.++| ||+||+||+.. .+.+-++++..+++.++.
T Consensus 337 ~gIpvv~dLP~VG~nLqDH~~~-~~~~~~~~~~~~~~~~~~ 376 (623)
T KOG1238|consen 337 LGIPVVLDLPGVGQNLQDHPMN-PGFVFSTNPVELSLIRLV 376 (623)
T ss_pred cCCCeeccCccccccccccccc-ceeeecCCCccccccccc
Confidence 9999999999 99999999997 555555556666654443
No 2
>PRK02106 choline dehydrogenase; Validated
Probab=100.00 E-value=7.2e-51 Score=416.34 Aligned_cols=304 Identities=41% Similarity=0.741 Sum_probs=251.9
Q ss_pred CCCcccEEEECCCchHHHHHhHhhcCCCceEEEEecCCCC---Cccccchhhhcc-ccCCCCccccccccCCccccCCCC
Q psy10417 20 LLDEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDED---RIFTDLVLISHY-YQFTPYNWGFKTTPQKNACLGLPN 95 (385)
Q Consensus 20 ~~~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~---~~~~~~p~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 95 (385)
+..+|||||||||++|+++|.+||+.+|.+|||||+|+.. ......|..... .....++|.+.+.|++. ..+
T Consensus 2 ~~~~~D~iIVG~G~aG~vvA~rLae~~g~~VlvlEaG~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~p~~~----~~~ 77 (560)
T PRK02106 2 TTMEYDYIIIGAGSAGCVLANRLSEDPDVSVLLLEAGGPDYRWDFFIQMPAALAFPLQGKRYNWAYETEPEPH----MNN 77 (560)
T ss_pred CCCcCcEEEECCcHHHHHHHHHHHhCCCCeEEEecCCCcccCCCcceeCcHHHHHhcCCCceeeceecccCCC----CCC
Confidence 3567999999999999999999999449999999999753 222233332211 22345678777777654 445
Q ss_pred CeeeecCcceecccccccCcEEecCChhhHHHHHhc-CCCCCChhhHHHHHHHHhhccCCCCCcccccccccCccccccC
Q psy10417 96 NQCLWPQGKGVGGSTIINGNIFTRGFPNDFNEWESL-GNTGWSFDDVLKYFKKFERINIPELNSDTVYHNTNGLLNVEYS 174 (385)
Q Consensus 96 ~~~~~~~g~~lGG~s~~~~~~~~r~~~~d~~~~~~~-~~~~w~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (385)
+.+.+.+|++|||+|.+|++++.|+.+.||+.|+.+ +..+|+|++|+|||+++|++...
T Consensus 78 ~~~~~~~g~~lGGsS~iN~~~~~R~~~~Dfd~w~~~~g~~~Ws~~~l~py~~k~E~~~~~-------------------- 137 (560)
T PRK02106 78 RRMECPRGKVLGGSSSINGMVYIRGNAMDYDNWAELPGLEGWSYADCLPYFKKAETRDGG-------------------- 137 (560)
T ss_pred CeeecccccccCCCCCccceEEecCCHHHHHHHHhhcCCCCCCHHHHHHHHHHhhccCCC--------------------
Confidence 678899999999999999999999999999999987 78899999999999999987631
Q ss_pred CccccchhhhhhccccCCCCcccCCCcceEeeeC-CCCchHHHHHHHHHHHcCCCC-CCCCCCCCCceeeeeeccccCCc
Q psy10417 175 PYKSKLSDIFLKVGLFNSDTVYHNTNGLLNVEYS-PYKSKLSDIFLKSSKELGYTN-IDYNNPNTKIGFSIVQSTIKNGR 252 (385)
Q Consensus 175 ~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~G~~~-~~~~~~~~~~g~~~~~~~~~~g~ 252 (385)
...+++..|++.+..+ ....+..+.+.++++++|++. .+.++.. +.|++.|...|..+.
T Consensus 138 ------------------~~~~~g~~gp~~~~~~~~~~~~~~~~~~~a~~~lG~~~~~~~~~~~-~~g~~~~~~~~~~g~ 198 (560)
T PRK02106 138 ------------------EDDYRGGDGPLSVTRGKPGTNPLFQAFVEAGVQAGYPRTDDLNGYQ-QEGFGPMDRTVTNGR 198 (560)
T ss_pred ------------------CccccCCCCCEEEeCCCCCCCHHHHHHHHHHHHcCCCcCCCCCCCC-CceeEEEeeecCCCE
Confidence 2235667788877654 455778888999999999986 4666665 788888888888999
Q ss_pred ccchhHHhhhhhccCCCeEEEeCcEEEEEEEcCCCCeEEEEEEEeCCeEEEEEeCcEEEEcCCCcccHHHHHHcCCCChh
Q psy10417 253 RMTASKAYLKPIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVKNGHKRSVFARKEVIVSSGAFNSPKLLMLSGVGPRE 332 (385)
Q Consensus 253 r~~~~~~~l~~~~~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~~g~~~~i~a~k~VVlAaGa~~tp~LL~~Sgig~~~ 332 (385)
|+++..+|+.++.++.|++|+++|.|++|+++ +++++||++.+.+..+++.+.|+||||||+++||+||++|||||.+
T Consensus 199 R~s~~~~~l~~a~~~~nl~i~~~a~V~rI~~~--~~~a~GV~~~~~~~~~~~~~ak~VILaaGai~TP~LLl~SGIG~~~ 276 (560)
T PRK02106 199 RWSAARAYLDPALKRPNLTIVTHALTDRILFE--GKRAVGVEYERGGGRETARARREVILSAGAINSPQLLQLSGIGPAE 276 (560)
T ss_pred EEChHHHhhccccCCCCcEEEcCCEEEEEEEe--CCeEEEEEEEeCCcEEEEEeeeeEEEccCCCCCHHHHhhcCCCChH
Confidence 99999999988877899999999999999998 6799999998765444554447999999999999999999999999
Q ss_pred hhhhcCCCcccccc-chhhhhhccCCCceEEEEcCCcc
Q psy10417 333 HLTELGIPVVQDLR-VGDNLMEHVAYSALTFGINKTFS 369 (385)
Q Consensus 333 ~l~~~gi~~~~~~p-vG~~l~dh~~~~~~~~~~~~~~~ 369 (385)
+|+++||+++.++| ||+||+||+.+ .+.|.+++++.
T Consensus 277 ~L~~~gI~~~~dlP~VG~NL~dH~~~-~~~~~~~~~~~ 313 (560)
T PRK02106 277 HLKELGIPVVHDLPGVGENLQDHLEV-YIQYECKQPVS 313 (560)
T ss_pred HHHhcCCceEeeCCCCCcChhhCccc-eEEEEeCCCcc
Confidence 99999999999999 99999999996 78888877644
No 3
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=100.00 E-value=5.7e-50 Score=407.53 Aligned_cols=298 Identities=39% Similarity=0.651 Sum_probs=250.0
Q ss_pred cEEEECCCchHHHHHhHhhcCCC-ceEEEEecCCCCC---ccccchhhhcc-ccCCCCccccccccCCccccCCCCCeee
Q psy10417 25 DFIIVGAGVGGCVVAHRLSEVPS-WKVLLIEAGDEDR---IFTDLVLISHY-YQFTPYNWGFKTTPQKNACLGLPNNQCL 99 (385)
Q Consensus 25 DviIVGsG~aG~~~A~~La~~~G-~~VlvLE~G~~~~---~~~~~p~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (385)
||||||||++|+++|.+||++ | .+|||||+|+... .....|..... ...+.++|.+.+.|++. ..++.+.
T Consensus 1 D~iIVG~G~aG~vvA~rLs~~-~~~~VlvlEaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~----~~~~~~~ 75 (532)
T TIGR01810 1 DYIIIGGGSAGSVLAGRLSED-VSNSVLVLEAGGSDYPWDLLIQMPAALAYPAGNKRYNWIYETEPEPH----MNNRRVG 75 (532)
T ss_pred CEEEECCCchHHHHHHHhccC-CCCeEEEEecCCCCCCCCcceeCcHHHHHhcCCCCcceeeEcccCCC----CCCceEe
Confidence 899999999999999999998 6 7999999998532 22233332111 22344678877777664 4567789
Q ss_pred ecCcceecccccccCcEEecCChhhHHHHHh-cCCCCCChhhHHHHHHHHhhccCCCCCcccccccccCccccccCCccc
Q psy10417 100 WPQGKGVGGSTIINGNIFTRGFPNDFNEWES-LGNTGWSFDDVLKYFKKFERINIPELNSDTVYHNTNGLLNVEYSPYKS 178 (385)
Q Consensus 100 ~~~g~~lGG~s~~~~~~~~r~~~~d~~~~~~-~~~~~w~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (385)
+.+|++|||+|.+|++++.|+.+.||+.|+. .+..+|+|++|+|||+++|.+++.
T Consensus 76 ~~~g~~lGGss~in~~~~~R~~~~d~~~w~~~~g~~~W~~~~l~py~~~~E~~~~~------------------------ 131 (532)
T TIGR01810 76 HARGKVLGGSSSINGMIYQRGNPMDYEKWAKPEGMESWDYADCLPYYKRLETTFGG------------------------ 131 (532)
T ss_pred eecccccCCCCCEeeeEEecCCHHHHHHHHHhcCCCCCCHHHHHHHHHHHhccCCC------------------------
Confidence 9999999999999999999999999999987 577899999999999999987652
Q ss_pred cchhhhhhccccCCCCcccCCCcceEeeeCCCCchHHHHHHHHHHHcCCCC-CCCCCCCCCceeeeeeccccCCcccchh
Q psy10417 179 KLSDIFLKVGLFNSDTVYHNTNGLLNVEYSPYKSKLSDIFLKSSKELGYTN-IDYNNPNTKIGFSIVQSTIKNGRRMTAS 257 (385)
Q Consensus 179 ~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~~~-~~~~~~~~~~g~~~~~~~~~~g~r~~~~ 257 (385)
...+++..|++.+..++...+..+.+.++++++|++. .+.++.. ..+++.|...|..|.|+++.
T Consensus 132 --------------~~~~~g~~G~~~v~~~~~~~~~~~~~~~a~~~~G~~~~~~~~~~~-~~g~~~~~~~~~~g~r~s~~ 196 (532)
T TIGR01810 132 --------------EKPYRGHDGPIKVRRGPADNPLFQAFIEAGVEAGYNKTPDVNGFR-QEGFGPMDSTVHNGRRVSAA 196 (532)
T ss_pred --------------CcccCCCCCCEEEecCCCCCHHHHHHHHHHHHcCCCccCCCCCCC-ccceEEEEEEcCCCEEEcHH
Confidence 2246777889888877777888899999999999986 4566555 66888887788899999999
Q ss_pred HHhhhhhccCCCeEEEeCcEEEEEEEcCCCCeEEEEEEEeCCeEEEEEeCcEEEEcCCCcccHHHHHHcCCCChhhhhhc
Q psy10417 258 KAYLKPIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVKNGHKRSVFARKEVIVSSGAFNSPKLLMLSGVGPREHLTEL 337 (385)
Q Consensus 258 ~~~l~~~~~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~~g~~~~i~a~k~VVlAaGa~~tp~LL~~Sgig~~~~l~~~ 337 (385)
.+|+.++.++.|++|+++|.|++|+++ +++++||++.+.+...++.+.|+||||||+++||+||++|||||.++|+++
T Consensus 197 ~~~l~~a~~r~nl~i~~~~~V~rI~~~--~~ra~GV~~~~~~~~~~~~~ak~VIlaAGai~SP~LLl~SGIG~~~~L~~~ 274 (532)
T TIGR01810 197 RAYLHPAMKRPNLEVQTRAFVTKINFE--GNRATGVEFKKGGRKEHTEANKEVILSAGAINSPQLLQLSGIGDAEHLREL 274 (532)
T ss_pred HHHhhhhccCCCeEEEeCCEEEEEEec--CCeEEEEEEEeCCcEEEEEEeeeEEEccCCCCCHHHHHhcCCCCHHHHHhc
Confidence 999988777889999999999999998 689999999876554455444799999999999999999999999999999
Q ss_pred CCCcccccc-chhhhhhccCCCceEEEEcCCcc
Q psy10417 338 GIPVVQDLR-VGDNLMEHVAYSALTFGINKTFS 369 (385)
Q Consensus 338 gi~~~~~~p-vG~~l~dh~~~~~~~~~~~~~~~ 369 (385)
||+++.++| ||+||+||+.+ .+.|.++++..
T Consensus 275 gI~~~~~lp~VG~nL~DH~~~-~~~~~~~~~~~ 306 (532)
T TIGR01810 275 GIEPRIHLPGVGENLQDHLEV-YVQHACKQPVS 306 (532)
T ss_pred CCCeEeeCCccccchhhcccc-eeEEEecCCcc
Confidence 999999999 99999999996 88888876543
No 4
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=100.00 E-value=3.4e-51 Score=387.30 Aligned_cols=289 Identities=42% Similarity=0.724 Sum_probs=223.7
Q ss_pred ccEEEECCCchHHHHHhHhhcCCCceEEEEecCCCCCccccchhh-hccccCCCCccccccccCCccccCCCCCeeeecC
Q psy10417 24 YDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDEDRIFTDLVLI-SHYYQFTPYNWGFKTTPQKNACLGLPNNQCLWPQ 102 (385)
Q Consensus 24 ~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~~~~~~~p~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (385)
|||||||||++|+++|.+||++++.+|||||+|+........+.. ........+.|.+...++.. .++..+.+++
T Consensus 1 yD~iIVGsG~~G~v~A~rLs~~~~~~VlvlEaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~ 76 (296)
T PF00732_consen 1 YDYIIVGSGAGGSVVASRLSEAGNKKVLVLEAGPRYPPEDSTPPSSFYQDFDSEYDWGYYSGPQPF----LNGRTINWPR 76 (296)
T ss_dssp EEEEEES-SHHHHHHHHHHTTSTTS-EEEEESSBSCTTSGHHGGGGGGGCTTTTTBBGEEECEEEC----TTTTSEEEEE
T ss_pred CCEEEECcCHHHHHHHHHHhhCCCCcEEEEEccccCccccchhhhccccccCcccccccccccccc----cccceeeeec
Confidence 899999999999999999999844799999999987544322211 12223445667666665544 5667788889
Q ss_pred cceecccccccCcEEecCChhhHHHHHhc-CCCCCChhhHHHHHHHHhhccCCCCCcccccccccCccccccCCccccch
Q psy10417 103 GKGVGGSTIINGNIFTRGFPNDFNEWESL-GNTGWSFDDVLKYFKKFERINIPELNSDTVYHNTNGLLNVEYSPYKSKLS 181 (385)
Q Consensus 103 g~~lGG~s~~~~~~~~r~~~~d~~~~~~~-~~~~w~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (385)
|++|||+|.+|++++.|+.+.||+.|... +...|+|++|.+||+++|++..++
T Consensus 77 G~~lGGsS~in~~~~~R~~~~df~~w~~~~g~~~w~~~~l~~~~~~~e~~~~~~-------------------------- 130 (296)
T PF00732_consen 77 GKGLGGSSAINGGVYFRPSPSDFDEWAREFGADGWSWDDLEPYYDKAETFLGPS-------------------------- 130 (296)
T ss_dssp B-STTGGGGTS--BE-B--HHHHHHHHHTTTCTTGSHHHHHHHHHHHEEEHTTB--------------------------
T ss_pred ceecCCcccccccccccCCcccchhhhhcccccccchhhHHHHHHHHHhhcccc--------------------------
Confidence 99999999999999999999999999987 667799999999999999887753
Q ss_pred hhhhhccccCCCCcccCCCcceEe-eeCCCCchHHHHHHHHHHHcCCCC-CCCCCCCCCceeeeeeccccCCcccchhHH
Q psy10417 182 DIFLKVGLFNSDTVYHNTNGLLNV-EYSPYKSKLSDIFLKSSKELGYTN-IDYNNPNTKIGFSIVQSTIKNGRRMTASKA 259 (385)
Q Consensus 182 ~~~~~~g~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~G~~~-~~~~~~~~~~g~~~~~~~~~~g~r~~~~~~ 259 (385)
...++..+++.+ .......+....+.++++++|++. .+.+... .+|++.+...|+.+.|+++..+
T Consensus 131 ------------~~~~g~~~~~~v~~~~~~~~~~~~~~~~a~~~~G~~~~~~~~~~~-~~g~~~~~~~~~~g~r~s~~~~ 197 (296)
T PF00732_consen 131 ------------SDLHGVDGPLPVSSSPPYPSPMNQALMDAAEELGIPVPQDFNGCD-PCGFCMTGFNCPNGARSSAATT 197 (296)
T ss_dssp ------------GGGSCBSSSEEEHHHCSCHCTHHHHHHHHHHHTTHHBCSCTTSST-CSEEEECEECECTTCBBHHHHH
T ss_pred ------------ccccccccccccccccCCCCHHHHHHHHHHHHcCCcccccccccc-ccccccccccccchhceehhhc
Confidence 234555667776 444555677788999999999984 4555544 5565554445999999999999
Q ss_pred hhhhhccCCCeEEEeCcEEEEEEEcCCCCeEEEEEEEeCCe---EEEEEeCcEEEEcCCCcccHHHHHHcCCCChhhhhh
Q psy10417 260 YLKPIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVKNGH---KRSVFARKEVIVSSGAFNSPKLLMLSGVGPREHLTE 336 (385)
Q Consensus 260 ~l~~~~~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~~g~---~~~i~a~k~VVlAaGa~~tp~LL~~Sgig~~~~l~~ 336 (385)
||.++.++.|++|+++|.|++|++++++++++||++.+.+. .+.+.+ |+||||||+++||+||++||||+...|++
T Consensus 198 ~L~~a~~~~n~~l~~~~~V~~i~~~~~~~~a~gV~~~~~~~~~~~~~~~a-k~VIlaAGai~Tp~LLl~SGiG~~~~L~~ 276 (296)
T PF00732_consen 198 YLPPALKRPNLTLLTNARVTRIIFDGDGGRATGVEYVDNDGGVQRRIVAA-KEVILAAGAIGTPRLLLRSGIGPKDHLDA 276 (296)
T ss_dssp HHHHHTTTTTEEEEESEEEEEEEEETTSTEEEEEEEEETTTSEEEEEEEE-EEEEE-SHHHHHHHHHHHTTEE-HHHHHH
T ss_pred ccchhhccCCccEEcCcEEEEEeeeccccceeeeeeeecCCcceeeeccc-eeEEeccCCCCChhhhcccccccHHHHHH
Confidence 99988888899999999999999976688999999997533 345555 79999999999999999999999999999
Q ss_pred cCCCccccccchhhhhhccC
Q psy10417 337 LGIPVVQDLRVGDNLMEHVA 356 (385)
Q Consensus 337 ~gi~~~~~~pvG~~l~dh~~ 356 (385)
.||+++.++|||+||||||.
T Consensus 277 ~gi~~~~~lpVG~nl~dH~~ 296 (296)
T PF00732_consen 277 LGIPVVVDLPVGRNLQDHPV 296 (296)
T ss_dssp TTHHHSEE-TTTECEB--EE
T ss_pred cCCCceeeCcchhchhcccC
Confidence 99999999999999999983
No 5
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=100.00 E-value=3e-45 Score=370.98 Aligned_cols=306 Identities=39% Similarity=0.712 Sum_probs=255.9
Q ss_pred CCCCcccEEEECCCchHHHHHhHhhcCCCceEEEEecCCCCCc-cccchhhhccccCC-CCccccccccCCccccCCCCC
Q psy10417 19 RLLDEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDEDRI-FTDLVLISHYYQFT-PYNWGFKTTPQKNACLGLPNN 96 (385)
Q Consensus 19 ~~~~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~~~-~~~~p~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 96 (385)
.+..+|||||||||.+|+++|.+|++. |++|+|||+|+.... ....|......... ..+|.+.+.+++. ..++
T Consensus 3 ~~~~~~D~vIVGsG~aG~~lA~rLs~~-g~~VllLEaG~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~----~~~r 77 (542)
T COG2303 3 EMKMEYDYVIVGSGSAGSVLAARLSDA-GLSVLVLEAGGPDRRPLIQMPAAYAFLMNGPRYDWGFRTEPEPH----LRGR 77 (542)
T ss_pred cccCCCCEEEECCCchhHHHHHHhcCC-CCeEEEEeCCCCCCccceecchhHhhhccCcccCCccccCcccC----CCCc
Confidence 456789999999999999999999965 999999999986433 33444444333333 6778888877763 6778
Q ss_pred eeeecCcceecccccccCcEEecCChhhHHHHHhc-CCCCCChhhHHHHHHHHhhccCCCCCcccccccccCccccccCC
Q psy10417 97 QCLWPQGKGVGGSTIINGNIFTRGFPNDFNEWESL-GNTGWSFDDVLKYFKKFERINIPELNSDTVYHNTNGLLNVEYSP 175 (385)
Q Consensus 97 ~~~~~~g~~lGG~s~~~~~~~~r~~~~d~~~~~~~-~~~~w~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (385)
.+.|+++++|||+|.+|++++.|..+.||+.|.+. +..+|.|++++|||+++|++.+....
T Consensus 78 ~~~~~rgk~lGGsS~ing~~~~R~~~~Df~~w~~~~G~~~W~y~d~lPyf~~aE~~~~~~g~------------------ 139 (542)
T COG2303 78 ELAWPRGKVLGGSSSINGMVYVRGHPEDFDAWAQESGAPGWPYDDVLPYFKRAEDLLGVGGQ------------------ 139 (542)
T ss_pred cccccccCcccchhhhccceeecCCHHHHHHHHhhcCCCCCCccccHHHHHHHHhhcCCCCC------------------
Confidence 89999999999999999999999999999999876 67999999999999999997764211
Q ss_pred ccccchhhhhhccccCCC-CcccCCCcceEeeeCCCCchHHHHHHHHHHHcCCCC-CCCCCCCCCceeeeeeccccCCcc
Q psy10417 176 YKSKLSDIFLKVGLFNSD-TVYHNTNGLLNVEYSPYKSKLSDIFLKSSKELGYTN-IDYNNPNTKIGFSIVQSTIKNGRR 253 (385)
Q Consensus 176 ~~~~~~~~~~~~g~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~~~-~~~~~~~~~~g~~~~~~~~~~g~r 253 (385)
+ ...++..+|+.+.......+....+.++..++|++. .++++.. ..|++.|...+..|.|
T Consensus 140 -----------------~~~~~~g~~gp~~~~~~~~~~~~~~a~~~a~~~~G~~~~~~~~~~~-~~g~g~~~~~~~~g~r 201 (542)
T COG2303 140 -----------------DLRTWHGGGGPLPVSPPRSPNPIARAFIEAGEQLGFPTTPDPNGAD-QEGFGPYCVTICNGRR 201 (542)
T ss_pred -----------------CCCCCcCCCCCccccCCCCchHHHHHHHHHHHHcCCCcCcccccCC-CCCcccceeeccCCeE
Confidence 1 336777788887776555788899999999999987 5677766 5666666555559999
Q ss_pred cchhHHhhhhhccCCCeEEEeCcEEEEEEEcCCCCeEEEEEEEeCCe--EEEEEeCcEEEEcCCCcccHHHHHHcCCCCh
Q psy10417 254 MTASKAYLKPIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVKNGH--KRSVFARKEVIVSSGAFNSPKLLMLSGVGPR 331 (385)
Q Consensus 254 ~~~~~~~l~~~~~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~~g~--~~~i~a~k~VVlAaGa~~tp~LL~~Sgig~~ 331 (385)
+++..+|+.++.+++|++|++++.|++|+++ +++++||++..++. .....+.++||||||+|+||+||++||+|+.
T Consensus 202 ~sa~~a~l~~a~~~~nl~v~t~a~v~ri~~~--~~r~~gv~~~~~~~~~~~~~~a~~~viL~AGai~Sp~LL~~Sgig~~ 279 (542)
T COG2303 202 WSAARAYLKPALKRPNLTLLTGARVRRILLE--GDRAVGVEVEIGDGGTIETAVAAREVVLAAGAINSPKLLLLSGIGPA 279 (542)
T ss_pred eechhhcchhHhcCCceEEecCCEEEEEEEE--CCeeEEEEEEeCCCCceEEEecCceEEEeccccCCHHHHHhcCCCch
Confidence 9999999999899999999999999999999 78999999986432 2344444699999999999999999999999
Q ss_pred hhhhhcCCCcccccc-chhhhhhccCCCceEEEEcCCc
Q psy10417 332 EHLTELGIPVVQDLR-VGDNLMEHVAYSALTFGINKTF 368 (385)
Q Consensus 332 ~~l~~~gi~~~~~~p-vG~~l~dh~~~~~~~~~~~~~~ 368 (385)
+.+..+|+.++.++| ||+||+||+.+ .+.+..+...
T Consensus 280 ~~~~~~g~~~v~~~~~vg~nl~dH~~~-~~~~~~~~~~ 316 (542)
T COG2303 280 DHLLEHGIDVVGRLPGVGQNLQDHLEI-YVAFEATEPT 316 (542)
T ss_pred hhhhhcCCeeeecCcchhHHHHhhhhh-hhheeccCcc
Confidence 999999999999999 99999999996 8888887765
No 6
>PLN02785 Protein HOTHEAD
Probab=100.00 E-value=6e-40 Score=334.29 Aligned_cols=276 Identities=26% Similarity=0.423 Sum_probs=206.7
Q ss_pred CCcccEEEECCCchHHHHHhHhhcCCCceEEEEecCCCCCccccchhhhccccCCCCccccccccCCccccCCCCCeeee
Q psy10417 21 LDEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDEDRIFTDLVLISHYYQFTPYNWGFKTTPQKNACLGLPNNQCLW 100 (385)
Q Consensus 21 ~~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (385)
...|||||||+|.+||++|.+|++ +.+|||||+|+............ .+.....+|.+.+.++.. ..++.+.+
T Consensus 53 ~~~yD~IIVG~G~aG~~lA~~Ls~--~~~VLllE~G~~~~~~~~~~~~~-~~~~~~~d~~~~~~~q~~----~~~~~~~~ 125 (587)
T PLN02785 53 DSAYDYIVVGGGTAGCPLAATLSQ--NFSVLLLERGGVPFGNANVSFLE-NFHIGLADTSPTSASQAF----ISTDGVIN 125 (587)
T ss_pred cccCCEEEECcCHHHHHHHHHHhc--CCcEEEEecCCCCCCCchhhhHH-hhCCcccccCCccccccc----cCCCceec
Confidence 457999999999999999999999 47999999998532111111111 122334578777766643 45677889
Q ss_pred cCcceecccccccCcEEecCChhhHHHHHhcCCCCCChhhHHHHHHHHhhccCCCCCcccccccccCccccccCCccccc
Q psy10417 101 PQGKGVGGSTIINGNIFTRGFPNDFNEWESLGNTGWSFDDVLKYFKKFERINIPELNSDTVYHNTNGLLNVEYSPYKSKL 180 (385)
Q Consensus 101 ~~g~~lGG~s~~~~~~~~r~~~~d~~~~~~~~~~~w~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (385)
++|++|||+|.+|+|.+.|.++.||+. .+|+|+.+.+||++.|+.+..
T Consensus 126 ~rGr~LGGsS~iN~~~y~Rg~~~d~~~------~GW~~~~~~~~~~~~e~~~~~-------------------------- 173 (587)
T PLN02785 126 ARARVLGGGTCINAGFYSRASTRFIQK------AGWDAKLVNESYPWVERQIVH-------------------------- 173 (587)
T ss_pred cccceecchhhhcCeEEEeCCHHHhcc------CCCCcccccchHHHHhccccc--------------------------
Confidence 999999999999999999999999953 579999999999999864311
Q ss_pred hhhhhhccccCCCCcccCCCcceEeeeCCCCchHHHHHHHHHHHcCCCCCCCCCC--CCCceeeeeeccc-cCCcccchh
Q psy10417 181 SDIFLKVGLFNSDTVYHNTNGLLNVEYSPYKSKLSDIFLKSSKELGYTNIDYNNP--NTKIGFSIVQSTI-KNGRRMTAS 257 (385)
Q Consensus 181 ~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~--~~~~g~~~~~~~~-~~g~r~~~~ 257 (385)
.+...+....+.+++.++|++. +++. +...|.......+ ..+.|.++.
T Consensus 174 ---------------------------~~~~~~~~~~~~~a~~e~G~~~--~n~~~~d~~~G~~~g~~i~~~~g~R~saa 224 (587)
T PLN02785 174 ---------------------------WPKVAPWQAALRDSLLEVGVSP--FNGFTYDHVYGTKVGGTIFDEFGRRHTAA 224 (587)
T ss_pred ---------------------------CCCcChHHHHHHHHHHHcCCCc--cCCCCCCCccceeeeEEEeCCCCEEcCHH
Confidence 0012345678889999999964 2211 1011211111111 357777766
Q ss_pred HHhhhhhccCCCeEEEeCcEEEEEEEcCCC--CeEEEEEEEe-CCeEEEE----EeCcEEEEcCCCcccHHHHHHcCCCC
Q psy10417 258 KAYLKPIIDRTNLHVIKNSRVVKIIIDPIS--KQAKGVELVK-NGHKRSV----FARKEVIVSSGAFNSPKLLMLSGVGP 330 (385)
Q Consensus 258 ~~~l~~~~~~~g~~i~~~~~V~~i~~~~~~--~~v~GV~~~~-~g~~~~i----~a~k~VVlAaGa~~tp~LL~~Sgig~ 330 (385)
. ++ +..++.|++|+++|.|++|++++.+ ++++||++.+ +|..+++ +++|+||||||+++||+||++|||||
T Consensus 225 ~-l~-~~~~~~nl~Vl~~a~V~rIl~~~~~~~~ra~GV~~~~~~g~~~~~~~~~~~~~eVILsAGai~sP~lL~~SGIGp 302 (587)
T PLN02785 225 E-LL-AAGNPNKLRVLLHATVQKIVFDTSGKRPRATGVIFKDENGNQHQAFLSNNKGSEIILSAGAIGSPQMLLLSGIGP 302 (587)
T ss_pred H-HH-hhcCCCCeEEEeCCEEEEEEEcCCCCCceEEEEEEEECCCceEEEEeecccCceEEecccccCCHHHHHHcCCCC
Confidence 5 44 4667889999999999999998522 4899999986 4554443 24579999999999999999999999
Q ss_pred hhhhhhcCCCcccccc-chhhhhhccCCCceEEEEcCC
Q psy10417 331 REHLTELGIPVVQDLR-VGDNLMEHVAYSALTFGINKT 367 (385)
Q Consensus 331 ~~~l~~~gi~~~~~~p-vG~~l~dh~~~~~~~~~~~~~ 367 (385)
.++|+++||+++.|+| ||+||+|||.. .+.+..+.+
T Consensus 303 ~~~L~~~gIpvv~dlP~VG~NL~DHp~~-~i~~~~~~~ 339 (587)
T PLN02785 303 KKELKKHKIPVVLHNEHVGKGMADNPMN-SIFVPSKAP 339 (587)
T ss_pred HHHHHHcCCCeeecCCCcccchhhCccc-ceEEEeCCC
Confidence 9999999999999999 99999999996 777877654
No 7
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=99.97 E-value=9e-30 Score=255.25 Aligned_cols=277 Identities=14% Similarity=0.149 Sum_probs=170.7
Q ss_pred ccEEEECCCchHHHHHhHhhcCCCceEEEEecCCCCCccc---------c----chhhhccccC----CC----------
Q psy10417 24 YDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDEDRIFT---------D----LVLISHYYQF----TP---------- 76 (385)
Q Consensus 24 ~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~~~~~---------~----~p~~~~~~~~----~~---------- 76 (385)
|||||||+|++|+++|+.|+++ |++|+|||+|....... . ...+...+.+ .+
T Consensus 1 ~dv~ivg~Gp~G~~~a~~l~~~-g~~v~~~e~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (544)
T TIGR02462 1 YDVFIAGSGPIGCTYARLCVDA-GLKVAMVEIGAADSFLKIGAHKKNEIEYQKDIDKFVNVIKGALQSVSVPVSNLVIPT 79 (544)
T ss_pred CcEEEECCchHHHHHHHHHHHC-CCeEEEEeccCccCCCcccccccccccccccHHHHHHHHhhhccccccccccCCcCC
Confidence 7999999999999999999998 99999999988664110 0 0000000000 00
Q ss_pred ---CccccccccCCccccCCC-------CCee-eecCcceecccccccCcEEecCChhhHHHHHhcCCCCC--ChhhHHH
Q psy10417 77 ---YNWGFKTTPQKNACLGLP-------NNQC-LWPQGKGVGGSTIINGNIFTRGFPNDFNEWESLGNTGW--SFDDVLK 143 (385)
Q Consensus 77 ---~~~~~~~~~~~~~~~~~~-------~~~~-~~~~g~~lGG~s~~~~~~~~r~~~~d~~~~~~~~~~~w--~~~~l~~ 143 (385)
..|... |. ....... ...+ ...+-+.|||+|.||++.++|+++++. .| -..+| +|+||+|
T Consensus 80 ~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~ar~R~vGGsS~hW~g~~~R~~p~~r-~g---~~~dWPI~y~eL~P 152 (544)
T TIGR02462 80 LDPTAWSAS--IE-SFFVSNGKNPEQDPFRNLSGEAVTRGVGGMSTHWTCATPRFHREER-PK---LSDDAAEDDAEWDR 152 (544)
T ss_pred CCccccccC--CC-cceecCCCCcccCchhccChhheeeccCchhhhcCcccCCCCHHhc-cC---CCCCCCCCHHHHHH
Confidence 011100 00 0000000 0001 123457899999999999999999642 11 14688 9999999
Q ss_pred HHHHHhhccCCCCCcccccccccCccccccCCccccchhhhhhccccCCCCcccCCCcceEeeeCCCCchHHHHHHHHHH
Q psy10417 144 YFKKFERINIPELNSDTVYHNTNGLLNVEYSPYKSKLSDIFLKVGLFNSDTVYHNTNGLLNVEYSPYKSKLSDIFLKSSK 223 (385)
Q Consensus 144 ~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 223 (385)
||.++|++++++.. .+. .+. ......+.+.+.+.
T Consensus 153 yY~~Ae~~~gv~g~-------------------------------------~~~---~~~------~~~~~~~~~~~~~~ 186 (544)
T TIGR02462 153 LYTKAESLIGTSTD-------------------------------------QFD---ESI------RHNLVLRKLQDEYK 186 (544)
T ss_pred HHHHHHHHhCCCCC-------------------------------------cCC---Ccc------cchhHHHHHHHHhc
Confidence 99999999986421 000 000 01122223333222
Q ss_pred HcCC-CCCCCCCCCCCceeeeeeccccCCcccchhHHhhhhhc----cCCCeEEEeCcEEEEEEEcCCC-CeEEEEEEEe
Q psy10417 224 ELGY-TNIDYNNPNTKIGFSIVQSTIKNGRRMTASKAYLKPII----DRTNLHVIKNSRVVKIIIDPIS-KQAKGVELVK 297 (385)
Q Consensus 224 ~~G~-~~~~~~~~~~~~g~~~~~~~~~~g~r~~~~~~~l~~~~----~~~g~~i~~~~~V~~i~~~~~~-~~v~GV~~~~ 297 (385)
|. ... ..+ ..+..+ .|+.+.++++..+.+..+. ++.|++|++++.|++|++++++ ++|++|++.+
T Consensus 187 --g~~~~~--~~P---lA~~~~--~c~~~ak~s~~~t~~~~~~~~~~~~~n~~l~~~a~v~~i~~d~~~~~~v~~v~~~d 257 (544)
T TIGR02462 187 --GQRDFQ--PLP---LACHRR--TDPTYVEWHSADTVFDLQPNDDAPSERFTLLTNHRCTRLVRNETNESEIEAALVRD 257 (544)
T ss_pred --cccccc--cCc---hhhhcc--CCCccceecCCccchhhhhhhhccCCCEEEEcCCEEEEEEeCCCCCceeEEEEEEE
Confidence 22 111 111 111111 3455666665444454333 4778999999999999998644 6899999987
Q ss_pred --CCeEEEEEeCcEEEEcCCCcccHHHHHHcCCCChhhhhhcCCCcccccc-chhhhhhccCCCceEEEEcCC
Q psy10417 298 --NGHKRSVFARKEVIVSSGAFNSPKLLMLSGVGPREHLTELGIPVVQDLR-VGDNLMEHVAYSALTFGINKT 367 (385)
Q Consensus 298 --~g~~~~i~a~k~VVlAaGa~~tp~LL~~Sgig~~~~l~~~gi~~~~~~p-vG~~l~dh~~~~~~~~~~~~~ 367 (385)
+++.++++|+ .||||||+++||+||++|+++.... ..|+......+ ||||||||+.. .+.+.+.++
T Consensus 258 ~~~g~~~~v~A~-~vVLAagaIetpRLLL~S~~~~~~~--p~gl~Nss~~g~VGRnlmdh~~~-~~~~~~~~~ 326 (544)
T TIGR02462 258 LLSGDRFEIKAD-VYVLACGAVHNPQILVNSGFGQLGR--PDPTNPPPLLPSLGRYITEQSMT-FCQIVLSTE 326 (544)
T ss_pred CCCCcEEEEECC-EEEEccCchhhHHHHHhCCCCCCcC--CCCcCCCCCCCCCCcchhcCCCc-cEEEEecch
Confidence 5788899995 8999999999999999999874221 11221110024 99999999985 677766654
No 8
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.56 E-value=8.7e-14 Score=142.30 Aligned_cols=59 Identities=20% Similarity=0.373 Sum_probs=49.3
Q ss_pred hhhhccCCCeEEEeCcEEEEEEEcCCCCeEEEEEEEeCCeEEEEEeCcEEEEcCCCcccHH
Q psy10417 261 LKPIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVKNGHKRSVFARKEVIVSSGAFNSPK 321 (385)
Q Consensus 261 l~~~~~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~~g~~~~i~a~k~VVlAaGa~~tp~ 321 (385)
|...+++.|++|++++.|++|+.+ +++|+||.+..+++...+.|+|.||||+|+|....
T Consensus 223 L~~~~~~~Gv~i~~~t~v~~Li~~--~g~V~GV~~~~~g~~~~i~a~kaVILAtGGf~~n~ 281 (564)
T PRK12845 223 LFAGVLRAGIPIWTETSLVRLTDD--GGRVTGAVVDHRGREVTVTARRGVVLAAGGFDHDM 281 (564)
T ss_pred HHHHHHHCCCEEEecCEeeEEEec--CCEEEEEEEEECCcEEEEEcCCEEEEecCCccccH
Confidence 333456689999999999999976 58999999887777778888779999999999654
No 9
>PRK07121 hypothetical protein; Validated
Probab=99.56 E-value=2.7e-13 Score=137.22 Aligned_cols=62 Identities=23% Similarity=0.410 Sum_probs=49.7
Q ss_pred hhhhccCCCeEEEeCcEEEEEEEcCCCCeEEEEEEEeCCeEEEEEeCcEEEEcCCCcccHHHH
Q psy10417 261 LKPIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVKNGHKRSVFARKEVIVSSGAFNSPKLL 323 (385)
Q Consensus 261 l~~~~~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~~g~~~~i~a~k~VVlAaGa~~tp~LL 323 (385)
|...+++.|++|+++++|++|+.++ +++++||++.++++.+.++|+|.||||+|++....-|
T Consensus 183 L~~~~~~~gv~i~~~~~v~~l~~~~-~g~v~Gv~~~~~~~~~~i~a~k~VVlAtGg~~~N~em 244 (492)
T PRK07121 183 LAKRAAALGVQIRYDTRATRLIVDD-DGRVVGVEARRYGETVAIRARKGVVLAAGGFAMNREM 244 (492)
T ss_pred HHHHHHhCCCEEEeCCEEEEEEECC-CCCEEEEEEEeCCcEEEEEeCCEEEECCCCcCcCHHH
Confidence 4445567799999999999999874 4799999998777777899955899999998854333
No 10
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.55 E-value=1.2e-13 Score=142.10 Aligned_cols=64 Identities=20% Similarity=0.359 Sum_probs=52.6
Q ss_pred hhhhhccCCCeEEEeCcEEEEEEEcCCCCeEEEEEEEeCCeEEEEEeCcEEEEcCCCccc-HHHHH
Q psy10417 260 YLKPIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVKNGHKRSVFARKEVIVSSGAFNS-PKLLM 324 (385)
Q Consensus 260 ~l~~~~~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~~g~~~~i~a~k~VVlAaGa~~t-p~LL~ 324 (385)
.+...++..|++|+++|.|++|+.|+ +++|+||.+..+++.+.++|++.||||+|+|.. +.++.
T Consensus 218 ~l~~~~~~~gv~i~~~~~~~~Li~d~-~g~V~Gv~~~~~~~~~~i~a~~aVilAtGGf~~N~em~~ 282 (584)
T PRK12835 218 RLRLALKDAGVPLWLDSPMTELITDP-DGAVVGAVVEREGRTLRIGARRGVILATGGFDHDMDWRK 282 (584)
T ss_pred HHHHHHHhCCceEEeCCEEEEEEECC-CCcEEEEEEEeCCcEEEEEeceeEEEecCcccCCHHHHH
Confidence 34455677899999999999999975 479999999887888889997689999999995 44443
No 11
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=99.52 E-value=3.1e-13 Score=137.30 Aligned_cols=64 Identities=20% Similarity=0.447 Sum_probs=51.3
Q ss_pred HhhhhhccCCCeEEEeCcEEEEEEEcCCCCeEEEEEEEeCCeEEEEEeCcEEEEcCCCccc-HHHHH
Q psy10417 259 AYLKPIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVKNGHKRSVFARKEVIVSSGAFNS-PKLLM 324 (385)
Q Consensus 259 ~~l~~~~~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~~g~~~~i~a~k~VVlAaGa~~t-p~LL~ 324 (385)
.++..+.++.|++|++++.|++|+.+ +++|+||++..+++.++++|+|.||||||++.. +.++.
T Consensus 178 ~l~~~~~~~~gv~i~~~t~~~~Li~~--~g~v~Gv~~~~~g~~~~i~A~k~VIlAtGG~~~n~~m~~ 242 (513)
T PRK12837 178 RFLAALARFPNARLRLNTPLVELVVE--DGRVVGAVVERGGERRRVRARRGVLLAAGGFEQNDDMRA 242 (513)
T ss_pred HHHHHHHhCCCCEEEeCCEEEEEEec--CCEEEEEEEEECCcEEEEEeCceEEEeCCCccCCHHHHH
Confidence 34444445569999999999999987 689999998877878889997689999999974 44443
No 12
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=99.52 E-value=6.9e-13 Score=135.61 Aligned_cols=61 Identities=13% Similarity=0.240 Sum_probs=49.2
Q ss_pred hccCCCeEEEeCcEEEEEEEcCCCCeEEEEEEEe--CCeEEEEEeCcEEEEcCCCcccHHHHHHcCC
Q psy10417 264 IIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVK--NGHKRSVFARKEVIVSSGAFNSPKLLMLSGV 328 (385)
Q Consensus 264 ~~~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~--~g~~~~i~a~k~VVlAaGa~~tp~LL~~Sgi 328 (385)
.+.+.|++++++++|++|..+ +++++||++.+ +++...|+|+ .||+|||+ ++..|+...|+
T Consensus 158 ~A~~~Ga~i~~~t~V~~i~~~--~~~v~gv~v~d~~~g~~~~i~A~-~VVnAaG~-wa~~l~~~~g~ 220 (546)
T PRK11101 158 DAKEHGAQILTYHEVTGLIRE--GDTVCGVRVRDHLTGETQEIHAP-VVVNAAGI-WGQHIAEYADL 220 (546)
T ss_pred HHHhCCCEEEeccEEEEEEEc--CCeEEEEEEEEcCCCcEEEEECC-EEEECCCh-hHHHHHHhcCC
Confidence 345679999999999999987 67899999875 3555689995 79999996 67888776664
No 13
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=99.52 E-value=8.3e-14 Score=138.09 Aligned_cols=59 Identities=25% Similarity=0.442 Sum_probs=46.4
Q ss_pred hhhhccCCCeEEEeCcEEEEEEEcCCCCeEEEEEEE--eCCeEEEEEeCcEEEEcCCCcccHHHH
Q psy10417 261 LKPIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELV--KNGHKRSVFARKEVIVSSGAFNSPKLL 323 (385)
Q Consensus 261 l~~~~~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~--~~g~~~~i~a~k~VVlAaGa~~tp~LL 323 (385)
+...+++.+++|++++.|++|+++ +++|+||++. .+++.++++|+ .||||+|++.. .++
T Consensus 147 l~~~~~~~gv~i~~~~~~~~Li~e--~g~V~Gv~~~~~~~g~~~~i~A~-aVIlAtGG~~~-~~~ 207 (417)
T PF00890_consen 147 LAKAAEEAGVDIRFNTRVTDLITE--DGRVTGVVAENPADGEFVRIKAK-AVILATGGFGG-ELL 207 (417)
T ss_dssp HHHHHHHTTEEEEESEEEEEEEEE--TTEEEEEEEEETTTCEEEEEEES-EEEE----BGG-HHH
T ss_pred HHHHHhhcCeeeeccceeeeEEEe--CCceeEEEEEECCCCeEEEEeee-EEEeccCcccc-ccc
Confidence 334455678999999999999998 6799999999 67888899995 99999999998 444
No 14
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.51 E-value=2.5e-13 Score=139.13 Aligned_cols=61 Identities=20% Similarity=0.363 Sum_probs=50.9
Q ss_pred hhhhhccCCCeEEEeCcEEEEEEEcCCCCeEEEEEEEeCCeEEEEEeCcEEEEcCCCcccHHH
Q psy10417 260 YLKPIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVKNGHKRSVFARKEVIVSSGAFNSPKL 322 (385)
Q Consensus 260 ~l~~~~~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~~g~~~~i~a~k~VVlAaGa~~tp~L 322 (385)
.|...+++.|++|++++.|++|+.+ +++|+||++..+++.+.++|++.||||+|+|....-
T Consensus 213 ~l~~~~~~~gv~i~~~~~v~~Li~~--~g~v~Gv~~~~~g~~~~i~A~~aVIlAtGG~~~N~e 273 (557)
T PRK12844 213 RMLEAALAAGVPLWTNTPLTELIVE--DGRVVGVVVVRDGREVLIRARRGVLLASGGFGHNAE 273 (557)
T ss_pred HHHHHHHhCCCEEEeCCEEEEEEEe--CCEEEEEEEEECCeEEEEEecceEEEecCCccCCHH
Confidence 3434556789999999999999987 689999999877878889996689999999997443
No 15
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=99.51 E-value=7.5e-13 Score=133.19 Aligned_cols=66 Identities=20% Similarity=0.301 Sum_probs=51.7
Q ss_pred hhhhccCCCeEEEeCcEEEEEEEcCCCCeEEEEEEE-eCCeEEEEEeCcEEEEcCCCcccHHHHHHcCCC
Q psy10417 261 LKPIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELV-KNGHKRSVFARKEVIVSSGAFNSPKLLMLSGVG 329 (385)
Q Consensus 261 l~~~~~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~-~~g~~~~i~a~k~VVlAaGa~~tp~LL~~Sgig 329 (385)
|...+++.|++|+++++|++|+.+ +++++||.+. .+++...+++ +.||||+|++.+.+.++..-.+
T Consensus 137 l~~~~~~~gv~i~~~t~v~~l~~~--~g~v~gv~~~~~~g~~~~i~a-~~VIlAtGg~~~n~~~~~~~~~ 203 (466)
T PRK08274 137 LYRSAERLGVEIRYDAPVTALELD--DGRFVGARAGSAAGGAERIRA-KAVVLAAGGFESNREWLREAWG 203 (466)
T ss_pred HHHHHHHCCCEEEcCCEEEEEEec--CCeEEEEEEEccCCceEEEEC-CEEEECCCCCCCCHHHHHhhcC
Confidence 333456679999999999999987 6799999985 4455667899 5899999999887766665443
No 16
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=99.50 E-value=5.5e-13 Score=128.50 Aligned_cols=60 Identities=28% Similarity=0.443 Sum_probs=46.1
Q ss_pred hhhhccCCCeEEEeCcEEEEEEEcCCCCeEEEEEEEeCCeEEEEEeCcEEEEcCCCcccHHHHHHcCC
Q psy10417 261 LKPIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVKNGHKRSVFARKEVIVSSGAFNSPKLLMLSGV 328 (385)
Q Consensus 261 l~~~~~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~~g~~~~i~a~k~VVlAaGa~~tp~LL~~Sgi 328 (385)
+...+++.|++|+++++|++|..+ +++++||++.++ .++|+ .||+|+|+ +++.|+..+++
T Consensus 153 l~~~~~~~Gv~i~~~~~V~~i~~~--~~~v~gv~~~~g----~i~ad-~vV~a~G~-~s~~l~~~~~~ 212 (358)
T PF01266_consen 153 LAAEAQRAGVEIRTGTEVTSIDVD--GGRVTGVRTSDG----EIRAD-RVVLAAGA-WSPQLLPLLGL 212 (358)
T ss_dssp HHHHHHHTT-EEEESEEEEEEEEE--TTEEEEEEETTE----EEEEC-EEEE--GG-GHHHHHHTTTT
T ss_pred hHHHHHHhhhhccccccccchhhc--cccccccccccc----ccccc-eeEecccc-cceeeeecccc
Confidence 333455679999999999999998 788999988654 58995 89999996 78888888765
No 17
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=99.49 E-value=9.6e-13 Score=133.48 Aligned_cols=55 Identities=22% Similarity=0.405 Sum_probs=44.6
Q ss_pred hhccCCCeEEEeCcEEEEEEEcCCCCeEEEEEEEeC-CeEEEEEeCcEEEEcCCCcccH
Q psy10417 263 PIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVKN-GHKRSVFARKEVIVSSGAFNSP 320 (385)
Q Consensus 263 ~~~~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~~-g~~~~i~a~k~VVlAaGa~~tp 320 (385)
..+++.|++|++++.|++|+.+ +++++||.+... ++...+.+ +.||||+|++...
T Consensus 198 ~~~~~~gv~i~~~t~v~~l~~~--~g~V~Gv~~~~~~g~~~~i~a-~~VVlAtGG~~~n 253 (506)
T PRK06481 198 KNVQERKIPLFVNADVTKITEK--DGKVTGVKVKINGKETKTISS-KAVVVTTGGFGAN 253 (506)
T ss_pred HHHHHcCCeEEeCCeeEEEEec--CCEEEEEEEEeCCCeEEEEec-CeEEEeCCCcccC
Confidence 3455679999999999999876 689999998753 45667999 5899999998754
No 18
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.43 E-value=5.2e-12 Score=129.48 Aligned_cols=63 Identities=22% Similarity=0.432 Sum_probs=51.5
Q ss_pred hhhhccCCCeEEEeCcEEEEEEEcCCCCeEEEEEEEeCCeEEEEEeCcEEEEcCCCcccHHHHHH
Q psy10417 261 LKPIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVKNGHKRSVFARKEVIVSSGAFNSPKLLML 325 (385)
Q Consensus 261 l~~~~~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~~g~~~~i~a~k~VVlAaGa~~tp~LL~~ 325 (385)
|...+++.|++|++++.|++|+.+ +++|+||++..+++.+.++|++.||||+|+|.+..-|+.
T Consensus 214 L~~~~~~~gv~v~~~t~v~~l~~~--~g~v~Gv~~~~~g~~~~i~A~~~VIlAtGG~~~n~~m~~ 276 (557)
T PRK07843 214 LRIGLQRAGVPVLLNTPLTDLYVE--DGRVTGVHAAESGEPQLIRARRGVILASGGFEHNEQMRA 276 (557)
T ss_pred HHHHHHcCCCEEEeCCEEEEEEEe--CCEEEEEEEEeCCcEEEEEeceeEEEccCCcCcCHHHHH
Confidence 334456789999999999999987 679999999877777889996679999999997554443
No 19
>PRK06175 L-aspartate oxidase; Provisional
Probab=99.41 E-value=7e-12 Score=124.73 Aligned_cols=57 Identities=25% Similarity=0.475 Sum_probs=45.2
Q ss_pred hhhhhccCCCeEEEeCcEEEEEEEcCCCCeEEEEEEEeCCeEEEEEeCcEEEEcCCCccc
Q psy10417 260 YLKPIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVKNGHKRSVFARKEVIVSSGAFNS 319 (385)
Q Consensus 260 ~l~~~~~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~~g~~~~i~a~k~VVlAaGa~~t 319 (385)
++..+.++.|++|++++.|++|+.+ ++++.||.+.+++..+.+.| +.||||+|++..
T Consensus 134 L~~~~~~~~gV~i~~~t~v~~Li~~--~~~v~Gv~~~~~g~~~~i~A-k~VILAtGG~~~ 190 (433)
T PRK06175 134 LLKKVKKRKNITIIENCYLVDIIEN--DNTCIGAICLKDNKQINIYS-KVTILATGGIGG 190 (433)
T ss_pred HHHHHHhcCCCEEEECcEeeeeEec--CCEEEEEEEEECCcEEEEEc-CeEEEccCcccc
Confidence 3333334569999999999999887 57899988776666668999 589999999764
No 20
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.39 E-value=9.4e-12 Score=127.78 Aligned_cols=52 Identities=13% Similarity=0.198 Sum_probs=44.2
Q ss_pred hccCCCeEEEeCcEEEEEEEcCCCCeEEEEEEEe--CCeEEEEEeCcEEEEcCCCcc
Q psy10417 264 IIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVK--NGHKRSVFARKEVIVSSGAFN 318 (385)
Q Consensus 264 ~~~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~--~g~~~~i~a~k~VVlAaGa~~ 318 (385)
.+.+.|++|+.++.|++|+.+ +++|+||.+.+ +++.+.+.| |.||||+|++.
T Consensus 145 ~~~~~gv~i~~~~~~~~Li~~--~g~v~Gv~~~~~~~g~~~~i~A-kaVVLATGG~~ 198 (566)
T PRK06452 145 RTSGLNVDFYNEWFSLDLVTD--NKKVVGIVAMQMKTLTPFFFKT-KAVVLATGGMG 198 (566)
T ss_pred HHHhCCCEEEeCcEEEEEEEE--CCEEEEEEEEECCCCeEEEEEe-CeEEECCCccc
Confidence 344569999999999999987 68999999875 456678999 69999999987
No 21
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=99.39 E-value=9.9e-12 Score=127.40 Aligned_cols=36 Identities=36% Similarity=0.609 Sum_probs=33.8
Q ss_pred CCcccEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417 21 LDEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD 57 (385)
Q Consensus 21 ~~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~ 57 (385)
..++||||||+|.+|+++|..++++ |.+|+||||++
T Consensus 2 ~~~~DVvVVG~G~AGl~AAl~Aa~~-G~~VivlEK~~ 37 (549)
T PRK12834 2 AMDADVIVVGAGLAGLVAAAELADA-GKRVLLLDQEN 37 (549)
T ss_pred CccCCEEEECcCHHHHHHHHHHHHC-CCeEEEEeCCC
Confidence 4679999999999999999999998 99999999986
No 22
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=99.39 E-value=2.6e-11 Score=120.00 Aligned_cols=34 Identities=21% Similarity=0.414 Sum_probs=32.3
Q ss_pred ccEEEECCCchHHHHHhHhhcCCCceEEEEecCCC
Q psy10417 24 YDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDE 58 (385)
Q Consensus 24 ~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~ 58 (385)
+||||||+|++|+++|++|+++ |.+|+||||+..
T Consensus 2 ~~vvIIGaG~~G~~~A~~La~~-g~~V~vle~~~~ 35 (410)
T PRK12409 2 SHIAVIGAGITGVTTAYALAQR-GYQVTVFDRHRY 35 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHC-CCeEEEEeCCCC
Confidence 5999999999999999999998 999999999874
No 23
>PLN02815 L-aspartate oxidase
Probab=99.38 E-value=1.2e-11 Score=127.13 Aligned_cols=55 Identities=11% Similarity=0.286 Sum_probs=43.8
Q ss_pred hccCCCeEEEeCcEEEEEEEcCCCC--eEEEEEEEe--CCeEEEEEeCcEEEEcCCCccc
Q psy10417 264 IIDRTNLHVIKNSRVVKIIIDPISK--QAKGVELVK--NGHKRSVFARKEVIVSSGAFNS 319 (385)
Q Consensus 264 ~~~~~g~~i~~~~~V~~i~~~~~~~--~v~GV~~~~--~g~~~~i~a~k~VVlAaGa~~t 319 (385)
+.+..|++|+.++.|++|+.+++++ +|+||.+.+ +++.+.+.| |.||||+|++..
T Consensus 165 ~~~~~~i~i~~~~~~~~Li~~~~g~~~~v~Gv~~~~~~~g~~~~i~A-kaVILATGG~g~ 223 (594)
T PLN02815 165 VKNDPNITFFEHHFAIDLLTSQDGGSIVCHGADVLDTRTGEVVRFIS-KVTLLASGGAGH 223 (594)
T ss_pred HHhcCCCEEEeceEhheeeeecCCCccEEEEEEEEEcCCCeEEEEEe-ceEEEcCCccee
Confidence 3345699999999999999864344 499999864 577778899 699999999874
No 24
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=99.38 E-value=5.5e-12 Score=119.58 Aligned_cols=108 Identities=18% Similarity=0.236 Sum_probs=63.4
Q ss_pred HHHHHHHHHcCCCCCCCCCCCCCceeeeeeccccCCcccchhHHhhhhhccCCCeEEEeCcEEEEEEEcCCCCeEEEEEE
Q psy10417 216 DIFLKSSKELGYTNIDYNNPNTKIGFSIVQSTIKNGRRMTASKAYLKPIIDRTNLHVIKNSRVVKIIIDPISKQAKGVEL 295 (385)
Q Consensus 216 ~~~~~~~~~~G~~~~~~~~~~~~~g~~~~~~~~~~g~r~~~~~~~l~~~~~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~ 295 (385)
+.++..++.+|+++..-.. |.-. |... +.+.....+...+++.|++|++++.|.+|..++ ..-.|.+
T Consensus 82 ~d~i~~~e~~Gi~~~e~~~-----Gr~F----p~sd-kA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~---~~f~l~t 148 (408)
T COG2081 82 EDFIDWVEGLGIALKEEDL-----GRMF----PDSD-KASPIVDALLKELEALGVTIRTRSRVSSVEKDD---SGFRLDT 148 (408)
T ss_pred HHHHHHHHhcCCeeEEccC-----ceec----CCcc-chHHHHHHHHHHHHHcCcEEEecceEEeEEecC---ceEEEEc
Confidence 4567777888887643222 2211 1211 222222233345678899999999999999873 2222333
Q ss_pred EeCCeEEEEEeCcEEEEcCCCcccHHHHHHcCCCChhhhhhcCCCcc
Q psy10417 296 VKNGHKRSVFARKEVIVSSGAFNSPKLLMLSGVGPREHLTELGIPVV 342 (385)
Q Consensus 296 ~~~g~~~~i~a~k~VVlAaGa~~tp~LL~~Sgig~~~~l~~~gi~~~ 342 (385)
. +|+ +++|+ .+|||+|+-.-|++ =..|.| ...+++.|++++
T Consensus 149 ~-~g~--~i~~d-~lilAtGG~S~P~l-Gstg~g-y~iA~~~G~~I~ 189 (408)
T COG2081 149 S-SGE--TVKCD-SLILATGGKSWPKL-GSTGFG-YPIARQFGHTIT 189 (408)
T ss_pred C-CCC--EEEcc-EEEEecCCcCCCCC-CCCchh-hHHHHHcCCccc
Confidence 3 333 79996 79999999888864 112222 334455666554
No 25
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.38 E-value=6.4e-12 Score=129.40 Aligned_cols=54 Identities=7% Similarity=0.137 Sum_probs=45.1
Q ss_pred hccCCCeEEEeCcEEEEEEEcCCCCeEEEEEEEe--CCeEEEEEeCcEEEEcCCCccc
Q psy10417 264 IIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVK--NGHKRSVFARKEVIVSSGAFNS 319 (385)
Q Consensus 264 ~~~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~--~g~~~~i~a~k~VVlAaGa~~t 319 (385)
.+.+.|++|++++.|++|+.++ +++|+||.+.+ +++.+.+.| |.||||+|++..
T Consensus 152 ~~~~~gi~i~~~~~~~~Li~~~-~g~v~Gv~~~~~~~g~~~~i~A-kaVILATGG~~~ 207 (588)
T PRK08958 152 QNLKNHTTIFSEWYALDLVKNQ-DGAVVGCTAICIETGEVVYFKA-RATVLATGGAGR 207 (588)
T ss_pred HhhhcCCEEEeCcEEEEEEECC-CCEEEEEEEEEcCCCcEEEEEc-CeEEECCCCccc
Confidence 3456799999999999999863 57999999853 577778999 599999999875
No 26
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=99.37 E-value=1.6e-11 Score=122.65 Aligned_cols=58 Identities=24% Similarity=0.264 Sum_probs=45.4
Q ss_pred hhhhccCCCeEEEeCcEEEEEEEcCCCCeEEEEEEEeC-CeEEEEEeCcEEEEcCCCcccH
Q psy10417 261 LKPIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVKN-GHKRSVFARKEVIVSSGAFNSP 320 (385)
Q Consensus 261 l~~~~~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~~-g~~~~i~a~k~VVlAaGa~~tp 320 (385)
|...+++.|++|++++.|++|+.++ +++++||++.+. ++...+.+ +.||||+|++...
T Consensus 136 l~~~~~~~gv~i~~~~~v~~l~~~~-~g~v~Gv~~~~~~g~~~~~~a-~~VVlAtGg~~~n 194 (439)
T TIGR01813 136 LYKKAKKEGIDTRLNSKVEDLIQDD-QGTVVGVVVKGKGKGIYIKAA-KAVVLATGGFGSN 194 (439)
T ss_pred HHHHHHHcCCEEEeCCEeeEeEECC-CCcEEEEEEEeCCCeEEEEec-ceEEEecCCCCCC
Confidence 4445567799999999999999864 478999998754 44456777 5899999998863
No 27
>PRK07395 L-aspartate oxidase; Provisional
Probab=99.37 E-value=4.7e-12 Score=129.39 Aligned_cols=53 Identities=21% Similarity=0.426 Sum_probs=44.4
Q ss_pred cCCCeEEEeCcEEEEEEEcCCCCeEEEEEEEeCCeEEEEEeCcEEEEcCCCccc
Q psy10417 266 DRTNLHVIKNSRVVKIIIDPISKQAKGVELVKNGHKRSVFARKEVIVSSGAFNS 319 (385)
Q Consensus 266 ~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~~g~~~~i~a~k~VVlAaGa~~t 319 (385)
++.|++|++++.|++|+.++++++|+||.+.+++....+.| |.||||+|++..
T Consensus 146 ~~~gi~i~~~~~v~~Li~~~~~g~v~Gv~~~~~g~~~~i~A-kaVILATGG~~~ 198 (553)
T PRK07395 146 QRPNIEIISQALALSLWLEPETGRCQGISLLYQGQITWLRA-GAVILATGGGGQ 198 (553)
T ss_pred hcCCcEEEECcChhhheecCCCCEEEEEEEEECCeEEEEEc-CEEEEcCCCCcc
Confidence 45699999999999999874347999999887777777889 589999999753
No 28
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.37 E-value=2.4e-11 Score=126.22 Aligned_cols=53 Identities=13% Similarity=0.355 Sum_probs=45.1
Q ss_pred hccCCCeEEEeCcEEEEEEEcCCCCeEEEEEEEe--CCeEEEEEeCcEEEEcCCCccc
Q psy10417 264 IIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVK--NGHKRSVFARKEVIVSSGAFNS 319 (385)
Q Consensus 264 ~~~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~--~g~~~~i~a~k~VVlAaGa~~t 319 (385)
.+++.|++|++++.|++|+.+ +++|+||.+.+ +++...+.| |.||||+|++..
T Consensus 179 ~~~~~gV~i~~~t~v~~Li~d--~g~V~GV~~~~~~~g~~~~i~A-kaVVLATGG~g~ 233 (640)
T PRK07573 179 QIAAGTVKMYTRTEMLDLVVV--DGRARGIVARNLVTGEIERHTA-DAVVLATGGYGN 233 (640)
T ss_pred HHHhcCCEEEeceEEEEEEEe--CCEEEEEEEEECCCCcEEEEEC-CEEEECCCCccc
Confidence 445679999999999999987 57999999875 466678899 589999999886
No 29
>PRK07804 L-aspartate oxidase; Provisional
Probab=99.36 E-value=2.7e-11 Score=123.87 Aligned_cols=57 Identities=18% Similarity=0.318 Sum_probs=43.8
Q ss_pred hhhhccCCCeEEEeCcEEEEEEEcCCCCeEEEEEEEe-----CCeEEEEEeCcEEEEcCCCccc
Q psy10417 261 LKPIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVK-----NGHKRSVFARKEVIVSSGAFNS 319 (385)
Q Consensus 261 l~~~~~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~-----~g~~~~i~a~k~VVlAaGa~~t 319 (385)
|...+++.+++|+.++.|++|+.++ +++|+||.+.+ .+....+.| |.||+|+|++..
T Consensus 150 L~~~~~~~gV~i~~~~~v~~Li~~~-~g~v~Gv~~~~~~~~~~~g~~~i~A-k~VIlATGG~~~ 211 (541)
T PRK07804 150 LDAAVRADPLDIREHALALDLLTDG-TGAVAGVTLHVLGEGSPDGVGAVHA-PAVVLATGGLGQ 211 (541)
T ss_pred HHHHHHhCCCEEEECeEeeeeEEcC-CCeEEEEEEEeccCCCCCcEEEEEc-CeEEECCCCCCC
Confidence 4344556689999999999999874 46999998862 233457889 589999999773
No 30
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=99.34 E-value=2.1e-11 Score=125.64 Aligned_cols=60 Identities=13% Similarity=0.335 Sum_probs=48.0
Q ss_pred hhccCCCeEEEeCcEEEEEEEcCCCCeEEEEEEEeCCeEEEEEeCcEEEEcCCCcccHHHHH
Q psy10417 263 PIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVKNGHKRSVFARKEVIVSSGAFNSPKLLM 324 (385)
Q Consensus 263 ~~~~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~~g~~~~i~a~k~VVlAaGa~~tp~LL~ 324 (385)
..+++.|++|++++.|++|+.+ +++|+||.+.+.+....+.+++.||||+|++....-++
T Consensus 222 ~~~~~~Gv~i~~~~~v~~l~~~--~g~V~GV~~~~~~~~~~i~a~k~VVlAtGg~~~n~~~~ 281 (574)
T PRK12842 222 KSALDLGIPILTGTPARELLTE--GGRVVGARVIDAGGERRITARRGVVLACGGFSHDLARI 281 (574)
T ss_pred HHHHhCCCEEEeCCEEEEEEee--CCEEEEEEEEcCCceEEEEeCCEEEEcCCCccchHHHH
Confidence 3456789999999999999987 68999999887555557888668999999998544443
No 31
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.34 E-value=2.3e-11 Score=124.57 Aligned_cols=57 Identities=19% Similarity=0.455 Sum_probs=45.5
Q ss_pred hhhhccCCCeEEEeCcEEEEEEEcCCCCeEEEEEEEe--CCeEEEEEeCcEEEEcCCCccc
Q psy10417 261 LKPIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVK--NGHKRSVFARKEVIVSSGAFNS 319 (385)
Q Consensus 261 l~~~~~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~--~g~~~~i~a~k~VVlAaGa~~t 319 (385)
|...+++.|++|++++.|++|+.++ +++++||.+.+ +++.+.+.| |.||||+|++..
T Consensus 140 L~~~~~~~gv~i~~~t~v~~Li~~~-~~~v~Gv~~~~~~~g~~~~i~A-kaVIlATGG~~~ 198 (543)
T PRK06263 140 LMEYLIKERIKILEEVMAIKLIVDE-NREVIGAIFLDLRNGEIFPIYA-KATILATGGAGQ 198 (543)
T ss_pred HHHHHhcCCCEEEeCeEeeeeEEeC-CcEEEEEEEEECCCCcEEEEEc-CcEEECCCCCCC
Confidence 3334556899999999999999874 45699998765 566678999 589999999874
No 32
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=99.34 E-value=6.5e-11 Score=121.98 Aligned_cols=60 Identities=22% Similarity=0.386 Sum_probs=49.6
Q ss_pred hhhhccCCCeEEEeCcEEEEEEEcCCCCeEEEEEEEeCCeEEEEEeCcEEEEcCCCcccHHH
Q psy10417 261 LKPIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVKNGHKRSVFARKEVIVSSGAFNSPKL 322 (385)
Q Consensus 261 l~~~~~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~~g~~~~i~a~k~VVlAaGa~~tp~L 322 (385)
|...+++.|++|++++.|++|+.+ +++|+||.+..+++.+.+.|++.||||+|++....=
T Consensus 227 L~~~~~~~Gv~i~~~t~v~~Li~~--~g~V~GV~~~~~g~~~~i~A~~~VVlAtGg~~~n~e 286 (578)
T PRK12843 227 LLYSLRARGVRILTQTDVESLETD--HGRVIGATVVQGGVRRRIRARGGVVLATGGFNRHPQ 286 (578)
T ss_pred HHHHHHhCCCEEEeCCEEEEEEee--CCEEEEEEEecCCeEEEEEccceEEECCCCcccCHH
Confidence 333456789999999999999987 689999999877777789876689999999997533
No 33
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=99.34 E-value=3e-11 Score=124.47 Aligned_cols=61 Identities=15% Similarity=0.269 Sum_probs=49.2
Q ss_pred hhhhccCCCeEEEeCcEEEEEEEcCCCCeEEEEEEEeCCeEEEEEeCcEEEEcCCCcccHHHH
Q psy10417 261 LKPIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVKNGHKRSVFARKEVIVSSGAFNSPKLL 323 (385)
Q Consensus 261 l~~~~~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~~g~~~~i~a~k~VVlAaGa~~tp~LL 323 (385)
|...+++.|++|++++.|++|+.+ +++++||.+..++..+.++|++.||||+|++....-+
T Consensus 223 L~~~a~~~Gv~i~~~t~v~~l~~~--~g~v~GV~~~~~~~~~~i~a~k~VVlAtGg~~~n~~~ 283 (581)
T PRK06134 223 LLKSAEDLGVRIWESAPARELLRE--DGRVAGAVVETPGGLQEIRARKGVVLAAGGFPHDPAR 283 (581)
T ss_pred HHHHHHhCCCEEEcCCEEEEEEEe--CCEEEEEEEEECCcEEEEEeCCEEEEcCCCcccCHHH
Confidence 334556789999999999999987 6899999988766666788955899999999865444
No 34
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.34 E-value=3.1e-11 Score=124.31 Aligned_cols=56 Identities=27% Similarity=0.465 Sum_probs=44.7
Q ss_pred hhhhccCCCeEEEeCcEEEEEEEcCCCCeEEEEEEEe--CCeEEEEEeCcEEEEcCCCccc
Q psy10417 261 LKPIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVK--NGHKRSVFARKEVIVSSGAFNS 319 (385)
Q Consensus 261 l~~~~~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~--~g~~~~i~a~k~VVlAaGa~~t 319 (385)
|...+++.|++|++++.|++|+.+ ++++.||...+ +++...+.| |.||||+|++..
T Consensus 141 L~~~~~~~gi~i~~~t~v~~L~~~--~g~v~Gv~~~~~~~g~~~~i~A-kaVVlATGG~~~ 198 (575)
T PRK05945 141 LVNNLRRYGVTIYDEWYVMRLILE--DNQAKGVVMYHIADGRLEVVRA-KAVMFATGGYGR 198 (575)
T ss_pred HHHHHhhCCCEEEeCcEEEEEEEE--CCEEEEEEEEEcCCCeEEEEEC-CEEEECCCCCcC
Confidence 333445679999999999999987 68999998653 566667899 589999999863
No 35
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=99.34 E-value=2e-11 Score=126.34 Aligned_cols=57 Identities=14% Similarity=0.255 Sum_probs=46.1
Q ss_pred hhhhccCCCeEEEeCcEEEEEEEcCCCCeEEEEEEEe--CCeEEEEEeCcEEEEcCCCccc
Q psy10417 261 LKPIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVK--NGHKRSVFARKEVIVSSGAFNS 319 (385)
Q Consensus 261 l~~~~~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~--~g~~~~i~a~k~VVlAaGa~~t 319 (385)
|...+.+.|++|+.++.|++|+.++ +++|.||.+.+ +|+.+.+.| |.||||+|++..
T Consensus 172 L~~~a~~~gv~i~~~~~~~~Li~~~-~g~v~Gv~~~~~~~g~~~~i~A-kaVVLATGG~~~ 230 (617)
T PTZ00139 172 LYGQSLKYDCNFFIEYFALDLIMDE-DGECRGVIAMSMEDGSIHRFRA-HYTVIATGGYGR 230 (617)
T ss_pred HHHHHHhCCCEEEeceEEEEEEECC-CCEEEEEEEEECCCCeEEEEEC-CcEEEeCCCCcc
Confidence 3334556799999999999999843 67999998754 577778999 589999999875
No 36
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.33 E-value=3.5e-11 Score=124.34 Aligned_cols=57 Identities=18% Similarity=0.259 Sum_probs=46.3
Q ss_pred hhhhccCCCeEEEeCcEEEEEEEcCCCCeEEEEEEEe--CCeEEEEEeCcEEEEcCCCccc
Q psy10417 261 LKPIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVK--NGHKRSVFARKEVIVSSGAFNS 319 (385)
Q Consensus 261 l~~~~~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~--~g~~~~i~a~k~VVlAaGa~~t 319 (385)
|...+++.|++|++++.|++|+.++ +++|+||.+.+ +|+.+.+.| |.||||+|++..
T Consensus 155 L~~~~~~~gi~i~~~~~v~~Li~~~-~g~v~Gv~~~~~~~g~~~~i~A-kaVVLATGG~~~ 213 (598)
T PRK09078 155 LYQQSLKHNAEFFIEYFALDLIMDD-GGVCRGVVAWNLDDGTLHRFRA-HMVVLATGGYGR 213 (598)
T ss_pred HHHHHhhcCCEEEEeEEEEEEEEcC-CCEEEEEEEEECCCCcEEEEEc-CEEEECCCCCcc
Confidence 3334456799999999999999873 47999999853 577778999 589999999985
No 37
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=99.33 E-value=4.7e-11 Score=123.75 Aligned_cols=55 Identities=16% Similarity=0.306 Sum_probs=45.4
Q ss_pred hccCCCeEEEeCcEEEEEEEcCCCCeEEEEEEEe--CCeEEEEEeCcEEEEcCCCcccH
Q psy10417 264 IIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVK--NGHKRSVFARKEVIVSSGAFNSP 320 (385)
Q Consensus 264 ~~~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~--~g~~~~i~a~k~VVlAaGa~~tp 320 (385)
.+.+.|++|+.++.|++|+.++ +++|.||.+.+ +|+.+.+.| |.||||+|++...
T Consensus 196 ~a~~~gv~i~~~~~~~~Li~~~-~g~v~Gv~~~~~~~g~~~~i~A-kaVILATGG~g~~ 252 (635)
T PLN00128 196 QAMKHNTQFFVEYFALDLIMDS-DGACQGVIALNMEDGTLHRFRA-HSTILATGGYGRA 252 (635)
T ss_pred HHHhCCCEEEEeeEEEEEEEcC-CCEEEEEEEEEcCCCeEEEEEc-CeEEECCCCCccc
Confidence 3445799999999999998864 47999999864 577778999 5899999999853
No 38
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.33 E-value=6.1e-11 Score=122.31 Aligned_cols=49 Identities=14% Similarity=0.150 Sum_probs=41.2
Q ss_pred CeEEEeCcEEEEEEEcCCCCeEEEEEEEe--CCeEEEEEeCcEEEEcCCCccc
Q psy10417 269 NLHVIKNSRVVKIIIDPISKQAKGVELVK--NGHKRSVFARKEVIVSSGAFNS 319 (385)
Q Consensus 269 g~~i~~~~~V~~i~~~~~~~~v~GV~~~~--~g~~~~i~a~k~VVlAaGa~~t 319 (385)
+++++.++.|++|+.++ +++|+||.+.+ +++.+.+.| |.||||+|++..
T Consensus 151 ~i~i~~~~~~~~Li~~~-~g~v~Gv~~~~~~~g~~~~i~A-kaVILATGG~~~ 201 (589)
T PRK08641 151 LVTKYEGWEFLGAVLDD-EGVCRGIVAQDLFTMEIESFPA-DAVIMATGGPGI 201 (589)
T ss_pred CcEEEeeEEEEEEEECC-CCEEEEEEEEECCCCcEEEEEC-CEEEECCCCCcC
Confidence 48999999999999863 57999999875 456667888 599999999885
No 39
>PRK12839 hypothetical protein; Provisional
Probab=99.32 E-value=3.3e-11 Score=123.67 Aligned_cols=58 Identities=16% Similarity=0.244 Sum_probs=45.4
Q ss_pred hhccCCCeEEEeCcEEEEEEEcCCCCeEEEEEEEeCCeEEEEEeCcEEEEcCCCcccHH
Q psy10417 263 PIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVKNGHKRSVFARKEVIVSSGAFNSPK 321 (385)
Q Consensus 263 ~~~~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~~g~~~~i~a~k~VVlAaGa~~tp~ 321 (385)
..+++.|++|+++|.|++|+.++ +++|+||.+.+.+...++.+.|.||||+|+|....
T Consensus 222 ~~a~~~Gv~i~~~t~v~~Li~~~-~g~V~GV~~~~~~g~~~i~aak~VVLAtGGf~~n~ 279 (572)
T PRK12839 222 RSADDLGVDLRVSTSATSLTTDK-NGRVTGVRVQGPDGAVTVEATRGVVLATGGFPNDV 279 (572)
T ss_pred HHHHHCCCEEEcCCEEEEEEECC-CCcEEEEEEEeCCCcEEEEeCCEEEEcCCCcccCH
Confidence 34556799999999999998764 57999999876444455666578999999998633
No 40
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=99.32 E-value=2.3e-11 Score=134.14 Aligned_cols=53 Identities=17% Similarity=0.426 Sum_probs=44.5
Q ss_pred CCeEEEeCcEEEEEEEcCC----C---CeEEEEEEEe----CCeEEEEEeCcEEEEcCCCcccHH
Q psy10417 268 TNLHVIKNSRVVKIIIDPI----S---KQAKGVELVK----NGHKRSVFARKEVIVSSGAFNSPK 321 (385)
Q Consensus 268 ~g~~i~~~~~V~~i~~~~~----~---~~v~GV~~~~----~g~~~~i~a~k~VVlAaGa~~tp~ 321 (385)
.|++|++++.|++|+.+++ + ++|+||.+.+ +|+...+.| |.||||+|+|....
T Consensus 560 ~gv~i~~~t~~~~LI~d~~~~~~G~~~~~V~Gv~~~~~~~~~g~~~~i~A-kaVILATGGf~~N~ 623 (1167)
T PTZ00306 560 GRVTIMTETTVTSLLSESSARPDGVREIRVTGVRYKQASDASGQVMDLLA-DAVILATGGFSNDH 623 (1167)
T ss_pred CCcEEEECCEEEEEEecCCcccCCCccceEEEEEEEecccCCCcEEEEEe-ceEEEecCCcccCc
Confidence 5999999999999998742 2 3899999985 577778999 68999999999753
No 41
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=99.31 E-value=7.1e-11 Score=118.76 Aligned_cols=54 Identities=22% Similarity=0.241 Sum_probs=42.5
Q ss_pred CC--eEEEeCcEEEEEEEcCCCCeEEEEEEEeCCeEEEEEeCcEEEEcCCCcccHHHHHHcCCC
Q psy10417 268 TN--LHVIKNSRVVKIIIDPISKQAKGVELVKNGHKRSVFARKEVIVSSGAFNSPKLLMLSGVG 329 (385)
Q Consensus 268 ~g--~~i~~~~~V~~i~~~~~~~~v~GV~~~~~g~~~~i~a~k~VVlAaGa~~tp~LL~~Sgig 329 (385)
.| ++|+++++|++|..+ ++....|.+.+ | +++|+ .||+|||+ ++..|+..+|++
T Consensus 228 ~G~~v~i~~~t~V~~I~~~--~~~~~~V~T~~-G---~i~A~-~VVvaAG~-~S~~La~~~Gi~ 283 (497)
T PTZ00383 228 PGKKISINLNTEVLNIERS--NDSLYKIHTNR-G---EIRAR-FVVVSACG-YSLLFAQKMGYG 283 (497)
T ss_pred cCCCEEEEeCCEEEEEEec--CCCeEEEEECC-C---EEEeC-EEEECcCh-hHHHHHHHhCCC
Confidence 45 899999999999876 44555565543 3 68995 79999997 688899999875
No 42
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=99.31 E-value=3.7e-11 Score=118.74 Aligned_cols=60 Identities=25% Similarity=0.323 Sum_probs=43.7
Q ss_pred hhccCCCeEEEeCcEEEEEEEcCCCCeEEEEEEEeCCeEEEEEeCcEEEEcCCCcccHHHHHHcCCC
Q psy10417 263 PIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVKNGHKRSVFARKEVIVSSGAFNSPKLLMLSGVG 329 (385)
Q Consensus 263 ~~~~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~~g~~~~i~a~k~VVlAaGa~~tp~LL~~Sgig 329 (385)
..+.+.|++++.+++|++|..++ ++++.+|.+.+ | .+.++ .||+|||++ ++.++...|+.
T Consensus 191 ~~a~~~Gv~~~~~~~V~~i~~~~-~~~~~~v~t~~-g---~i~a~-~vVvaagg~-~~~l~~~~g~~ 250 (407)
T TIGR01373 191 RGADRRGVDIIQNCEVTGFIRRD-GGRVIGVETTR-G---FIGAK-KVGVAVAGH-SSVVAAMAGFR 250 (407)
T ss_pred HHHHHCCCEEEeCCEEEEEEEcC-CCcEEEEEeCC-c---eEECC-EEEECCChh-hHHHHHHcCCC
Confidence 34556799999999999997642 45677776654 3 68895 799999984 55666655543
No 43
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=99.30 E-value=7e-11 Score=117.05 Aligned_cols=56 Identities=21% Similarity=0.318 Sum_probs=42.0
Q ss_pred hccCCCeEEEeCcEEEEEEEcCCCCeEEEEEEEeCCeEEEEEeCcEEEEcCCCcccHHHHHHcC
Q psy10417 264 IIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVKNGHKRSVFARKEVIVSSGAFNSPKLLMLSG 327 (385)
Q Consensus 264 ~~~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~~g~~~~i~a~k~VVlAaGa~~tp~LL~~Sg 327 (385)
.+++.|++|++++.|++|..+ ++++++|.+.. + +++++ .||+|+|+ ++..++..-|
T Consensus 210 ~~~~~G~~i~~~~~V~~i~~~--~~~~~~v~t~~-~---~~~a~-~VV~a~G~-~~~~l~~~~g 265 (416)
T PRK00711 210 MAEQLGVKFRFNTPVDGLLVE--GGRITGVQTGG-G---VITAD-AYVVALGS-YSTALLKPLG 265 (416)
T ss_pred HHHHCCCEEEcCCEEEEEEec--CCEEEEEEeCC-c---EEeCC-EEEECCCc-chHHHHHHhC
Confidence 455679999999999999877 56777776543 3 68885 79999997 5566665444
No 44
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=99.29 E-value=1.2e-10 Score=113.68 Aligned_cols=122 Identities=16% Similarity=0.085 Sum_probs=73.2
Q ss_pred cceEeeeCCCCchHHHHHHHHHHHcCCCC-C----------CCCCCCCCceeeeeeccccCCcccchhHHhhhhhccCCC
Q psy10417 201 GLLNVEYSPYKSKLSDIFLKSSKELGYTN-I----------DYNNPNTKIGFSIVQSTIKNGRRMTASKAYLKPIIDRTN 269 (385)
Q Consensus 201 g~~~~~~~~~~~~~~~~~~~~~~~~G~~~-~----------~~~~~~~~~g~~~~~~~~~~g~r~~~~~~~l~~~~~~~g 269 (385)
+.+-+...+......+.+.+.+.+.|+.. . +++-.+.+.+..+.+...... ......++.. .+..+|
T Consensus 90 g~l~vA~~e~e~~~L~~l~~~~~~ngv~~~~~ld~~~i~~~eP~l~~~~~aal~~p~~giV~-~~~~t~~l~e-~a~~~g 167 (429)
T COG0579 90 GKLSVATGEEEVERLEKLYERGKANGVFDLEILDKEEIKELEPLLNEGAVAALLVPSGGIVD-PGELTRALAE-EAQANG 167 (429)
T ss_pred CeEEEEEChHHHHHHHHHHHHHhhCCCcceeecCHHHHHhhCccccccceeeEEcCCCceEc-HHHHHHHHHH-HHHHcC
Confidence 56666666666666666777777777762 1 111111133333333221111 1112233343 445569
Q ss_pred eEEEeCcEEEEEEEcCCCCeEEEEEEEeCCeEEEEEeCcEEEEcCCCcccHHHHHHcCCCC
Q psy10417 270 LHVIKNSRVVKIIIDPISKQAKGVELVKNGHKRSVFARKEVIVSSGAFNSPKLLMLSGVGP 330 (385)
Q Consensus 270 ~~i~~~~~V~~i~~~~~~~~v~GV~~~~~g~~~~i~a~k~VVlAaGa~~tp~LL~~Sgig~ 330 (385)
++|.+|++|++|..+++ | ++-+.+.. |++. ++| |.||.|||. .+.+|+.++|+.+
T Consensus 168 ~~i~ln~eV~~i~~~~d-g-~~~~~~~~-g~~~-~~a-k~Vin~AGl-~Ad~la~~~g~~~ 222 (429)
T COG0579 168 VELRLNTEVTGIEKQSD-G-VFVLNTSN-GEET-LEA-KFVINAAGL-YADPLAQMAGIPE 222 (429)
T ss_pred CEEEecCeeeEEEEeCC-c-eEEEEecC-CcEE-EEe-eEEEECCch-hHHHHHHHhCCCc
Confidence 99999999999998753 2 33343433 4443 999 589999994 8899999999876
No 45
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=99.29 E-value=5.7e-11 Score=123.71 Aligned_cols=56 Identities=18% Similarity=0.318 Sum_probs=46.5
Q ss_pred hhhhccCCCeEEEeCcEEEEEEEcCCCCeEEEEEEEe--CCeEEEEEeCcEEEEcCCCccc
Q psy10417 261 LKPIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVK--NGHKRSVFARKEVIVSSGAFNS 319 (385)
Q Consensus 261 l~~~~~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~--~g~~~~i~a~k~VVlAaGa~~t 319 (385)
|...+.+.|++|+.++.|++|+.+ +++|.||.+.+ +|+.+.+.| |.||||+|++..
T Consensus 164 L~~~~~~~gv~i~~~~~~~~Li~~--~g~v~Gv~~~~~~~G~~~~i~A-kaVVLATGG~g~ 221 (657)
T PRK08626 164 VDNEAIKLGVPVHDRKEAIALIHD--GKRCYGAVVRCLITGELRAYVA-KATLIATGGYGR 221 (657)
T ss_pred HHHHHHhCCCEEEeeEEEEEEEEE--CCEEEEEEEEEcCCCcEEEEEc-CeEEECCCcccC
Confidence 333455679999999999999987 68999999875 677778899 589999999874
No 46
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=99.29 E-value=4.8e-11 Score=122.93 Aligned_cols=54 Identities=17% Similarity=0.259 Sum_probs=44.1
Q ss_pred hhccCCCeEEEeCcEEEEEEEcCCCCeEEEEEEEe--CCeEEEEEeCcEEEEcCCCccc
Q psy10417 263 PIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVK--NGHKRSVFARKEVIVSSGAFNS 319 (385)
Q Consensus 263 ~~~~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~--~g~~~~i~a~k~VVlAaGa~~t 319 (385)
..+++.|++|+.++.|++|+.+ +++++||.+.+ +++...+.| |.||||+|++..
T Consensus 137 ~~~~~~gv~i~~~~~v~~L~~~--~g~v~Gv~~~~~~~g~~~~i~A-k~VVlAtGG~~~ 192 (566)
T TIGR01812 137 EQCLKLGVSFFNEYFALDLIHD--DGRVRGVVAYDLKTGEIVFFRA-KAVVLATGGYGR 192 (566)
T ss_pred HHHHHcCCEEEeccEEEEEEEe--CCEEEEEEEEECCCCcEEEEEC-CeEEECCCcccC
Confidence 3344569999999999999987 68999998864 466667899 589999999863
No 47
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=99.28 E-value=6.4e-11 Score=118.96 Aligned_cols=37 Identities=32% Similarity=0.416 Sum_probs=33.3
Q ss_pred CCcccEEEECCCchHHHHHhHhhcC-CCceEEEEecCC
Q psy10417 21 LDEYDFIIVGAGVGGCVVAHRLSEV-PSWKVLLIEAGD 57 (385)
Q Consensus 21 ~~~~DviIVGsG~aG~~~A~~La~~-~G~~VlvLE~G~ 57 (385)
+.++||||||+|++|+++|++|+++ +|.+|+|||++.
T Consensus 22 ~~~~DVvIIGgGi~Gls~A~~La~~~~G~~V~vlE~~~ 59 (460)
T TIGR03329 22 DTQADVCIVGGGFTGLWTAIMIKQQRPALDVLVLEADL 59 (460)
T ss_pred CceeCEEEECCCHHHHHHHHHHHHhCCCCeEEEEeCCc
Confidence 4468999999999999999999996 589999999974
No 48
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=99.27 E-value=1.3e-10 Score=120.23 Aligned_cols=49 Identities=18% Similarity=0.234 Sum_probs=40.2
Q ss_pred CCCeEEEeCcEEEEEEEcCCCCeEEEEEEEe--CCeEEEEEeCcEEEEcCCCcc
Q psy10417 267 RTNLHVIKNSRVVKIIIDPISKQAKGVELVK--NGHKRSVFARKEVIVSSGAFN 318 (385)
Q Consensus 267 ~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~--~g~~~~i~a~k~VVlAaGa~~ 318 (385)
+.|++|+.++.|++|+.+ +++++||.+.+ +++.+.+.| +.||||+|++.
T Consensus 145 ~ggV~i~~~~~v~~Li~~--~g~v~Gv~~~~~~~g~~~~i~A-kaVILATGG~~ 195 (608)
T PRK06854 145 ALGDNVLNRVFITDLLVD--DNRIAGAVGFSVRENKFYVFKA-KAVIVATGGAA 195 (608)
T ss_pred cCCCEEEeCCEEEEEEEe--CCEEEEEEEEEccCCcEEEEEC-CEEEECCCchh
Confidence 345999999999999987 57999998643 466668899 58999999876
No 49
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=99.27 E-value=3e-10 Score=111.13 Aligned_cols=34 Identities=44% Similarity=0.686 Sum_probs=32.0
Q ss_pred ccEEEECCCchHHHHHhHhhcCCCceEEEEecCCC
Q psy10417 24 YDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDE 58 (385)
Q Consensus 24 ~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~ 58 (385)
|||||||+|++|+++|++|+++ |.+|+|||++..
T Consensus 1 ~dvvIIGaGi~G~s~A~~La~~-g~~V~l~e~~~~ 34 (380)
T TIGR01377 1 FDVIVVGAGIMGCFAAYHLAKH-GKKTLLLEQFDL 34 (380)
T ss_pred CcEEEECCCHHHHHHHHHHHHC-CCeEEEEeccCC
Confidence 7999999999999999999998 999999999753
No 50
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.27 E-value=1.7e-10 Score=119.06 Aligned_cols=54 Identities=15% Similarity=0.164 Sum_probs=44.1
Q ss_pred hccCCCeEEEeCcEEEEEEEcCCCCeEEEEEEEe--CCeEEEEEeCcEEEEcCCCccc
Q psy10417 264 IIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVK--NGHKRSVFARKEVIVSSGAFNS 319 (385)
Q Consensus 264 ~~~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~--~g~~~~i~a~k~VVlAaGa~~t 319 (385)
.+.+.|++++.++.|++|+.++ ++++.||.+.+ +++...+.| |.||||+|++..
T Consensus 157 ~~~~~gi~i~~~~~~~~Li~~~-~g~v~Gv~~~~~~~g~~~~i~A-kaVILATGG~~~ 212 (591)
T PRK07057 157 QNVAAKTQFFVEWMALDLIRDA-DGDVLGVTALEMETGDVYILEA-KTTLFATGGAGR 212 (591)
T ss_pred HHHhcCCEEEeCcEEEEEEEcC-CCeEEEEEEEEcCCCeEEEEEC-CeEEECCCCccc
Confidence 3446799999999999999864 57999999864 466667888 589999999874
No 51
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=99.27 E-value=6e-11 Score=122.17 Aligned_cols=52 Identities=15% Similarity=0.365 Sum_probs=43.1
Q ss_pred ccCCCeEEEeCcEEEEEEEcCCCCeEEEEEEEe--CCeEEEEEeCcEEEEcCCCccc
Q psy10417 265 IDRTNLHVIKNSRVVKIIIDPISKQAKGVELVK--NGHKRSVFARKEVIVSSGAFNS 319 (385)
Q Consensus 265 ~~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~--~g~~~~i~a~k~VVlAaGa~~t 319 (385)
.+..|+++++++.|++|+.+ ++++.||...+ +++...+.| |.||||+|++..
T Consensus 144 ~~~~~i~i~~~~~v~~Li~~--~g~v~Gv~~~~~~~g~~~~i~A-kaVIlATGG~~~ 197 (582)
T PRK09231 144 LKYPQIQRFDEHFVLDILVD--DGHVRGLVAMNMMEGTLVQIRA-NAVVMATGGAGR 197 (582)
T ss_pred hcCCCcEEEeCeEEEEEEEe--CCEEEEEEEEEcCCCcEEEEEC-CEEEECCCCCcC
Confidence 34468999999999999987 68999998753 566678999 599999999774
No 52
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.26 E-value=1.4e-10 Score=120.38 Aligned_cols=47 Identities=15% Similarity=0.231 Sum_probs=40.1
Q ss_pred eEEEeCcEEEEEEEcCCCCeEEEEEEEe--CCeEEEEEeCcEEEEcCCCccc
Q psy10417 270 LHVIKNSRVVKIIIDPISKQAKGVELVK--NGHKRSVFARKEVIVSSGAFNS 319 (385)
Q Consensus 270 ~~i~~~~~V~~i~~~~~~~~v~GV~~~~--~g~~~~i~a~k~VVlAaGa~~t 319 (385)
++|+.++.|++|+.+ ++++.||...+ +++.+.+.| +.||||+|++..
T Consensus 166 v~i~~~~~v~~L~~~--~g~v~Gv~~~~~~~g~~~~i~A-k~VVlATGG~~~ 214 (626)
T PRK07803 166 IKVFAECTITELLKD--GGRIAGAFGYWRESGRFVLFEA-PAVVLATGGIGK 214 (626)
T ss_pred eEEEeCCEEEEEEEE--CCEEEEEEEEECCCCeEEEEEc-CeEEECCCcccC
Confidence 999999999999987 67999998754 566678999 589999999764
No 53
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=99.26 E-value=5.5e-12 Score=123.75 Aligned_cols=78 Identities=24% Similarity=0.249 Sum_probs=44.7
Q ss_pred hhhhccCCCeEEEeCcEEEEEEEcCCCCeEEEEEEEeCCeEEEEEeCcEEEEcCCCcccHHHHHHcCCCChhhhhhcCCC
Q psy10417 261 LKPIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVKNGHKRSVFARKEVIVSSGAFNSPKLLMLSGVGPREHLTELGIP 340 (385)
Q Consensus 261 l~~~~~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~~g~~~~i~a~k~VVlAaGa~~tp~LL~~Sgig~~~~l~~~gi~ 340 (385)
|...+++.|++|+++++|.+|..+ ++.+..|++. ++ ..+.++ .||||+|+...|++ --+|. -...+++.|+.
T Consensus 115 L~~~l~~~gv~i~~~~~V~~i~~~--~~~~f~v~~~-~~--~~~~a~-~vILAtGG~S~p~~-GS~G~-gy~~a~~lGh~ 186 (409)
T PF03486_consen 115 LLEELKRLGVEIHFNTRVKSIEKK--EDGVFGVKTK-NG--GEYEAD-AVILATGGKSYPKT-GSDGS-GYRIAKKLGHT 186 (409)
T ss_dssp HHHHHHHHT-EEE-S--EEEEEEE--TTEEEEEEET-TT--EEEEES-EEEE----SSSGGG-T-SSH-HHHHHHHTT--
T ss_pred HHHHHHHcCCEEEeCCEeeeeeec--CCceeEeecc-Cc--ccccCC-EEEEecCCCCcccc-CCCcH-HHHHHHHCCCc
Confidence 434556789999999999999988 5677778773 22 278995 79999999887763 11111 13445667777
Q ss_pred cccccc
Q psy10417 341 VVQDLR 346 (385)
Q Consensus 341 ~~~~~p 346 (385)
++...|
T Consensus 187 i~~~~P 192 (409)
T PF03486_consen 187 ITPPYP 192 (409)
T ss_dssp EEEEEE
T ss_pred EecCCC
Confidence 665554
No 54
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=99.25 E-value=2.4e-10 Score=115.60 Aligned_cols=56 Identities=16% Similarity=0.303 Sum_probs=44.7
Q ss_pred hhhhccC-CCeEEEeCcEEEEEEEcCCCCeEEEEEEEeCCeEEEEEeCcEEEEcCCCccc
Q psy10417 261 LKPIIDR-TNLHVIKNSRVVKIIIDPISKQAKGVELVKNGHKRSVFARKEVIVSSGAFNS 319 (385)
Q Consensus 261 l~~~~~~-~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~~g~~~~i~a~k~VVlAaGa~~t 319 (385)
|...+++ .|++|++++.|++|+.+ +++++||.+.+.+....+.+ +.||||+|++..
T Consensus 134 L~~~~~~~~gi~i~~~~~v~~l~~~--~g~v~Gv~~~~~~~~~~i~A-~~VVlAtGG~~~ 190 (488)
T TIGR00551 134 LVKKALNHPNIRIIEGENALDLLIE--TGRVVGVWVWNRETVETCHA-DAVVLATGGAGK 190 (488)
T ss_pred HHHHHHhcCCcEEEECeEeeeeecc--CCEEEEEEEEECCcEEEEEc-CEEEECCCcccC
Confidence 3333443 79999999999999987 57899998887555567889 589999999874
No 55
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=99.25 E-value=1.8e-10 Score=113.46 Aligned_cols=58 Identities=19% Similarity=0.219 Sum_probs=42.8
Q ss_pred hhccCCCeEEEeCcEEEEEEEcCCCCeEEEEEEEeCCeEEEEEeCcEEEEcCCCcccHHHHHHcCCC
Q psy10417 263 PIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVKNGHKRSVFARKEVIVSSGAFNSPKLLMLSGVG 329 (385)
Q Consensus 263 ~~~~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~~g~~~~i~a~k~VVlAaGa~~tp~LL~~Sgig 329 (385)
..+++.|++++.++.|+++..+ ++.+ .|++. ++ ++.++ .||+|+|+ +++.++...|+.
T Consensus 157 ~~~~~~Gv~i~~~~~V~~i~~~--~~~~-~V~~~-~g---~i~ad-~vV~A~G~-~s~~l~~~~g~~ 214 (393)
T PRK11728 157 ELIQARGGEIRLGAEVTALDEH--ANGV-VVRTT-QG---EYEAR-TLINCAGL-MSDRLAKMAGLE 214 (393)
T ss_pred HHHHhCCCEEEcCCEEEEEEec--CCeE-EEEEC-CC---EEEeC-EEEECCCc-chHHHHHHhCCC
Confidence 3455679999999999999876 3443 45443 23 68895 79999996 678888777764
No 56
>PRK08275 putative oxidoreductase; Provisional
Probab=99.25 E-value=1.8e-10 Score=118.16 Aligned_cols=58 Identities=19% Similarity=0.250 Sum_probs=45.5
Q ss_pred hhhhhccCCCeEEEeCcEEEEEEEcCCCCeEEEEEEEe--CCeEEEEEeCcEEEEcCCCccc
Q psy10417 260 YLKPIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVK--NGHKRSVFARKEVIVSSGAFNS 319 (385)
Q Consensus 260 ~l~~~~~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~--~g~~~~i~a~k~VVlAaGa~~t 319 (385)
.|...+++.|++|++++.|++|+.++ ++++.||.+.+ +++...+.| |.||||+|++..
T Consensus 142 ~L~~~~~~~gv~i~~~~~v~~Li~~~-~g~v~Gv~~~~~~~g~~~~i~A-k~VIlATGG~~~ 201 (554)
T PRK08275 142 VLYRQLKRARVLITNRIMATRLLTDA-DGRVAGALGFDCRTGEFLVIRA-KAVILCCGAAGR 201 (554)
T ss_pred HHHHHHHHCCCEEEcceEEEEEEEcC-CCeEEEEEEEecCCCcEEEEEC-CEEEECCCCccc
Confidence 34444556799999999999999863 46899998764 566667889 589999999853
No 57
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=99.24 E-value=1.8e-10 Score=119.47 Aligned_cols=62 Identities=18% Similarity=0.292 Sum_probs=48.8
Q ss_pred hccCCCeEEEeCcEEEEEEEcCCCCeEEEEEEEe--CCeEEEEEeCcEEEEcCCCcccHHHHHHcC
Q psy10417 264 IIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVK--NGHKRSVFARKEVIVSSGAFNSPKLLMLSG 327 (385)
Q Consensus 264 ~~~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~--~g~~~~i~a~k~VVlAaGa~~tp~LL~~Sg 327 (385)
.+.+.|++|+.+++|++|..++.++++++|.+.+ +++.+++.++ .||+|||+ ++..|+...+
T Consensus 241 ~A~~~Ga~i~~~~~V~~l~~~~~~g~v~gV~v~d~~tg~~~~i~a~-~VVnAaGa-ws~~l~~~~g 304 (627)
T PLN02464 241 TAALAGAAVLNYAEVVSLIKDESTGRIVGARVRDNLTGKEFDVYAK-VVVNAAGP-FCDEVRKMAD 304 (627)
T ss_pred HHHhCCcEEEeccEEEEEEEecCCCcEEEEEEEECCCCcEEEEEeC-EEEECCCH-hHHHHHHhcc
Confidence 4556799999999999998763236899998865 4556678995 89999996 6788887665
No 58
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=99.24 E-value=2.8e-10 Score=113.26 Aligned_cols=76 Identities=18% Similarity=0.269 Sum_probs=60.2
Q ss_pred ccCCCeEEEeCcEEEEEEEcCCCCeEEEEEEEe--CCeEEEEEeCcEEEEcCCCcccHHHHHHcCCCCh---hhhhhcCC
Q psy10417 265 IDRTNLHVIKNSRVVKIIIDPISKQAKGVELVK--NGHKRSVFARKEVIVSSGAFNSPKLLMLSGVGPR---EHLTELGI 339 (385)
Q Consensus 265 ~~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~--~g~~~~i~a~k~VVlAaGa~~tp~LL~~Sgig~~---~~l~~~gi 339 (385)
+...|.++++.++|+++..+ ++ +.||++.+ +|+.+.++| +.||.|||+ ++-.++...+..+. ......|+
T Consensus 174 A~~~Ga~il~~~~v~~~~re--~~-v~gV~~~D~~tg~~~~ira-~~VVNAaGp-W~d~i~~~~~~~~~~~~~vr~skGs 248 (532)
T COG0578 174 AAEHGAEILTYTRVESLRRE--GG-VWGVEVEDRETGETYEIRA-RAVVNAAGP-WVDEILEMAGLEQSPHIGVRPSKGS 248 (532)
T ss_pred HHhcccchhhcceeeeeeec--CC-EEEEEEEecCCCcEEEEEc-CEEEECCCc-cHHHHHHhhcccCCCCccceeccce
Confidence 34679999999999999998 56 99999996 478999999 589999995 78888888866542 33446777
Q ss_pred Cccccc
Q psy10417 340 PVVQDL 345 (385)
Q Consensus 340 ~~~~~~ 345 (385)
.++++.
T Consensus 249 HlVv~~ 254 (532)
T COG0578 249 HLVVDK 254 (532)
T ss_pred EEEecc
Confidence 766554
No 59
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.24 E-value=1.9e-10 Score=118.61 Aligned_cols=51 Identities=24% Similarity=0.376 Sum_probs=42.3
Q ss_pred ccCCCeEEEeCcEEEEEEEcCCCCeEEEEEEEe--CCeEEEEEeCcEEEEcCCCcc
Q psy10417 265 IDRTNLHVIKNSRVVKIIIDPISKQAKGVELVK--NGHKRSVFARKEVIVSSGAFN 318 (385)
Q Consensus 265 ~~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~--~g~~~~i~a~k~VVlAaGa~~ 318 (385)
.+..|++++.++.|++|+.+ +++++||.+.+ +++...+.| |.||||+|++.
T Consensus 148 ~~~~gv~i~~~~~v~~Li~~--~g~v~Gv~~~~~~~g~~~~i~A-k~VIlATGG~~ 200 (577)
T PRK06069 148 LRFDNIHFYDEHFVTSLIVE--NGVFKGVTAIDLKRGEFKVFQA-KAGIIATGGAG 200 (577)
T ss_pred HhcCCCEEEECCEEEEEEEE--CCEEEEEEEEEcCCCeEEEEEC-CcEEEcCchhc
Confidence 34469999999999999987 67999998764 566667899 58999999985
No 60
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=99.24 E-value=4.5e-10 Score=113.09 Aligned_cols=62 Identities=21% Similarity=0.256 Sum_probs=44.3
Q ss_pred hccCCCeEEEeCcEEEEEEEcCCCCeEEEEEEE--eCCeEEEEEeCcEEEEcCCCcccHHHHHHcCCC
Q psy10417 264 IIDRTNLHVIKNSRVVKIIIDPISKQAKGVELV--KNGHKRSVFARKEVIVSSGAFNSPKLLMLSGVG 329 (385)
Q Consensus 264 ~~~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~--~~g~~~~i~a~k~VVlAaGa~~tp~LL~~Sgig 329 (385)
.+++.|++|+++++|++|..++ ++.+. |.+. +.++..+++|+ .||+|||+ ++.+|+...|+.
T Consensus 187 ~a~~~Gv~i~~~t~V~~i~~~~-~~~v~-v~~~~~~~g~~~~i~A~-~VV~AAG~-~s~~La~~~Gi~ 250 (483)
T TIGR01320 187 YLVQNGTTIRFGHEVRNLKRQS-DGSWT-VTVKNTRTGGKRTLNTR-FVFVGAGG-GALPLLQKSGIP 250 (483)
T ss_pred HHHhCCCEEEeCCEEEEEEEcC-CCeEE-EEEeeccCCceEEEECC-EEEECCCc-chHHHHHHcCCC
Confidence 4455799999999999998753 23332 3332 23444468995 89999997 678888888875
No 61
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=99.23 E-value=2.6e-10 Score=117.28 Aligned_cols=51 Identities=14% Similarity=0.310 Sum_probs=43.2
Q ss_pred cCCCeEEEeCcEEEEEEEcCCCCeEEEEEEEe--CCeEEEEEeCcEEEEcCCCccc
Q psy10417 266 DRTNLHVIKNSRVVKIIIDPISKQAKGVELVK--NGHKRSVFARKEVIVSSGAFNS 319 (385)
Q Consensus 266 ~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~--~g~~~~i~a~k~VVlAaGa~~t 319 (385)
+..|++++.++.|++|+.+ +++|.||...+ +|+...+.| |.||||+|++..
T Consensus 144 ~~~~i~i~~~~~v~~Li~~--~g~v~Gv~~~~~~~g~~~~i~A-kaVILATGG~~~ 196 (580)
T TIGR01176 144 TYPQIMRYDEWFVTDLLVD--DGRVCGLVAIEMAEGRLVTILA-DAVVLATGGAGR 196 (580)
T ss_pred hcCCCEEEeCeEEEEEEee--CCEEEEEEEEEcCCCcEEEEec-CEEEEcCCCCcc
Confidence 4468999999999999987 67999998764 566778999 599999999874
No 62
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=99.21 E-value=3.1e-10 Score=117.27 Aligned_cols=51 Identities=18% Similarity=0.317 Sum_probs=42.9
Q ss_pred CCCeEEEeCcEEEEEEEcCCCCeEEEEEEEe--CCeEEEEEeCcEEEEcCCCccc
Q psy10417 267 RTNLHVIKNSRVVKIIIDPISKQAKGVELVK--NGHKRSVFARKEVIVSSGAFNS 319 (385)
Q Consensus 267 ~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~--~g~~~~i~a~k~VVlAaGa~~t 319 (385)
..|++|++++.|++|+.++ +++|+||.+.+ +++...+.| |.||||+|++..
T Consensus 145 ~~gV~i~~~t~v~~Li~dd-~grV~GV~~~~~~~g~~~~i~A-kaVVLATGG~g~ 197 (603)
T TIGR01811 145 AGLVEKYEGWEMLDIIVVD-GNRARGIIARNLVTGEIETHSA-DAVILATGGYGN 197 (603)
T ss_pred cCCcEEEeCcEEEEEEEcC-CCEEEEEEEEECCCCcEEEEEc-CEEEECCCCCcC
Confidence 4589999999999999863 57999999875 466678899 589999999864
No 63
>PRK09077 L-aspartate oxidase; Provisional
Probab=99.20 E-value=4.8e-10 Score=114.60 Aligned_cols=55 Identities=15% Similarity=0.313 Sum_probs=44.3
Q ss_pred hccCCCeEEEeCcEEEEEEEcC----CCCeEEEEEEEe--CCeEEEEEeCcEEEEcCCCccc
Q psy10417 264 IIDRTNLHVIKNSRVVKIIIDP----ISKQAKGVELVK--NGHKRSVFARKEVIVSSGAFNS 319 (385)
Q Consensus 264 ~~~~~g~~i~~~~~V~~i~~~~----~~~~v~GV~~~~--~g~~~~i~a~k~VVlAaGa~~t 319 (385)
+.+++|++|++++.|++|+.++ ++++++||.+.+ +++...+.| +.||||+|++..
T Consensus 148 ~~~~~~I~v~~~~~v~~Li~~~~~~~~~g~v~Gv~~~~~~~g~~~~i~A-k~VVlATGG~~~ 208 (536)
T PRK09077 148 ARNHPNITVLERHNAIDLITSDKLGLPGRRVVGAYVLNRNKERVETIRA-KFVVLATGGASK 208 (536)
T ss_pred HHhCCCcEEEeeEEeeeeeecccccCCCCEEEEEEEEECCCCcEEEEec-CeEEECCCCCCC
Confidence 3345699999999999999763 137999999874 466778999 589999999874
No 64
>PRK08071 L-aspartate oxidase; Provisional
Probab=99.19 E-value=6.1e-10 Score=113.12 Aligned_cols=49 Identities=22% Similarity=0.450 Sum_probs=41.9
Q ss_pred CCeEEEeCcEEEEEEEcCCCCeEEEEEEEe-CCeEEEEEeCcEEEEcCCCccc
Q psy10417 268 TNLHVIKNSRVVKIIIDPISKQAKGVELVK-NGHKRSVFARKEVIVSSGAFNS 319 (385)
Q Consensus 268 ~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~-~g~~~~i~a~k~VVlAaGa~~t 319 (385)
.|++|++++.|++|+.+ ++++.||.+.+ +++.+.++| +.||||+|++..
T Consensus 142 ~gV~i~~~~~v~~Li~~--~g~v~Gv~~~~~~g~~~~i~A-k~VVlATGG~~~ 191 (510)
T PRK08071 142 PHVTVVEQEMVIDLIIE--NGRCIGVLTKDSEGKLKRYYA-DYVVLASGGCGG 191 (510)
T ss_pred cCCEEEECeEhhheeec--CCEEEEEEEEECCCcEEEEEc-CeEEEecCCCcc
Confidence 58999999999999887 67999999876 456667889 589999999874
No 65
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.19 E-value=6.7e-10 Score=114.63 Aligned_cols=59 Identities=17% Similarity=0.232 Sum_probs=46.0
Q ss_pred hhhhhccCCCeEEEeCcEEEEEEEcCC--CCeEEEEEEEe--CCeEEEEEeCcEEEEcCCCccc
Q psy10417 260 YLKPIIDRTNLHVIKNSRVVKIIIDPI--SKQAKGVELVK--NGHKRSVFARKEVIVSSGAFNS 319 (385)
Q Consensus 260 ~l~~~~~~~g~~i~~~~~V~~i~~~~~--~~~v~GV~~~~--~g~~~~i~a~k~VVlAaGa~~t 319 (385)
.|...+++.|++|++++.|++|+.+++ +++|+||...+ +++.+.+.| |.||||+|++..
T Consensus 145 ~L~~~~~~~gv~i~~~~~v~~Li~~~~~~~g~v~Gv~~~~~~~g~~~~i~A-kaVVLATGG~~~ 207 (583)
T PRK08205 145 TLYQNCVKHGVEFFNEFYVLDLLLTETPSGPVAAGVVAYELATGEIHVFHA-KAVVFATGGSGR 207 (583)
T ss_pred HHHHHHHhcCCEEEeCCEEEEEEecCCccCCcEEEEEEEEcCCCeEEEEEe-CeEEECCCCCcc
Confidence 344445567999999999999998731 27999998853 566668899 589999999873
No 66
>PRK07512 L-aspartate oxidase; Provisional
Probab=99.19 E-value=3.4e-10 Score=115.06 Aligned_cols=50 Identities=16% Similarity=0.371 Sum_probs=42.2
Q ss_pred cCCCeEEEeCcEEEEEEEcCCCCeEEEEEEEeCCeEEEEEeCcEEEEcCCCcc
Q psy10417 266 DRTNLHVIKNSRVVKIIIDPISKQAKGVELVKNGHKRSVFARKEVIVSSGAFN 318 (385)
Q Consensus 266 ~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~~g~~~~i~a~k~VVlAaGa~~ 318 (385)
++.|++|+.++.|++|+.+ +++++||.+.+.+....+.| +.||||+|++.
T Consensus 148 ~~~gV~i~~~~~v~~Li~~--~g~v~Gv~~~~~~~~~~i~A-k~VVLATGG~~ 197 (513)
T PRK07512 148 ATPSITVLEGAEARRLLVD--DGAVAGVLAATAGGPVVLPA-RAVVLATGGIG 197 (513)
T ss_pred hCCCCEEEECcChhheeec--CCEEEEEEEEeCCeEEEEEC-CEEEEcCCCCc
Confidence 3458999999999999877 67999999887665567889 58999999986
No 67
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=99.19 E-value=1.1e-09 Score=110.46 Aligned_cols=62 Identities=23% Similarity=0.313 Sum_probs=43.4
Q ss_pred hccCCC-eEEEeCcEEEEEEEcCCCCeEEEEEEEe--CCeEEEEEeCcEEEEcCCCcccHHHHHHcCCC
Q psy10417 264 IIDRTN-LHVIKNSRVVKIIIDPISKQAKGVELVK--NGHKRSVFARKEVIVSSGAFNSPKLLMLSGVG 329 (385)
Q Consensus 264 ~~~~~g-~~i~~~~~V~~i~~~~~~~~v~GV~~~~--~g~~~~i~a~k~VVlAaGa~~tp~LL~~Sgig 329 (385)
.+++.| ++|+++++|++|..++ +++++ |.+.+ .|+..+++|+ .||+|||+ ++..|+..+|+.
T Consensus 192 ~a~~~Ggv~i~~~teV~~I~~~~-dg~~~-v~~~~~~~G~~~~i~A~-~VVvaAGg-~s~~L~~~~Gi~ 256 (494)
T PRK05257 192 YLQKQGNFELQLGHEVRDIKRND-DGSWT-VTVKDLKTGEKRTVRAK-FVFIGAGG-GALPLLQKSGIP 256 (494)
T ss_pred HHHhCCCeEEEeCCEEEEEEECC-CCCEE-EEEEEcCCCceEEEEcC-EEEECCCc-chHHHHHHcCCC
Confidence 344444 8999999999998753 34333 33332 3433468995 89999997 678888888875
No 68
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=99.18 E-value=5.5e-10 Score=108.76 Aligned_cols=33 Identities=39% Similarity=0.535 Sum_probs=31.5
Q ss_pred ccEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417 24 YDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD 57 (385)
Q Consensus 24 ~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~ 57 (385)
|||+|||+|++|+++|++|+++ |.+|+|||++.
T Consensus 1 ~dv~IIG~Gi~G~s~A~~L~~~-G~~V~vle~~~ 33 (365)
T TIGR03364 1 YDLIIVGAGILGLAHAYAAARR-GLSVTVIERSS 33 (365)
T ss_pred CCEEEECCCHHHHHHHHHHHHC-CCeEEEEeCCC
Confidence 6999999999999999999998 99999999975
No 69
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=99.18 E-value=1.2e-09 Score=106.66 Aligned_cols=36 Identities=25% Similarity=0.337 Sum_probs=33.5
Q ss_pred CcccEEEECCCchHHHHHhHhhcCCCceEEEEecCCC
Q psy10417 22 DEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDE 58 (385)
Q Consensus 22 ~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~ 58 (385)
.+|||+|||+|++|+++|++|+++ |.+|+|||++..
T Consensus 2 ~~~dv~IIGgGi~G~s~A~~L~~~-g~~V~lie~~~~ 37 (376)
T PRK11259 2 MRYDVIVIGLGSMGSAAGYYLARR-GLRVLGLDRFMP 37 (376)
T ss_pred CcccEEEECCCHHHHHHHHHHHHC-CCeEEEEecccC
Confidence 469999999999999999999998 999999999853
No 70
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=99.17 E-value=7.5e-10 Score=114.06 Aligned_cols=54 Identities=19% Similarity=0.209 Sum_probs=42.9
Q ss_pred ccCCCeEEEeCcEEEEEEEcCC-CCeEEEEEEEe--CCeEEEEEeCcEEEEcCCCccc
Q psy10417 265 IDRTNLHVIKNSRVVKIIIDPI-SKQAKGVELVK--NGHKRSVFARKEVIVSSGAFNS 319 (385)
Q Consensus 265 ~~~~g~~i~~~~~V~~i~~~~~-~~~v~GV~~~~--~g~~~~i~a~k~VVlAaGa~~t 319 (385)
....+++|+.++.|++|+.+++ +++|.||.+.+ +++.+.+.| |.||||+|++..
T Consensus 136 l~~~~~~i~~~~~v~~Ll~d~~~~GrV~Gv~~~~~~~g~~~~i~A-kaVVLATGG~~~ 192 (614)
T TIGR02061 136 AKNALGDIFERIFIVKLLLDKNTPNRIAGAVGFNVRANEVHVFKA-KTVIVAAGGAVN 192 (614)
T ss_pred HHhCCCeEEcccEEEEEEecCCCCCeEEEEEEEEeCCCcEEEEEC-CEEEECCCcccc
Confidence 3345689999999999998742 27999999854 566778999 589999999863
No 71
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.17 E-value=8e-10 Score=119.34 Aligned_cols=49 Identities=20% Similarity=0.333 Sum_probs=41.7
Q ss_pred CCeEEEeCcEEEEEEEcCCCCeEEEEEEEe--CCeEEEEEeCcEEEEcCCCccc
Q psy10417 268 TNLHVIKNSRVVKIIIDPISKQAKGVELVK--NGHKRSVFARKEVIVSSGAFNS 319 (385)
Q Consensus 268 ~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~--~g~~~~i~a~k~VVlAaGa~~t 319 (385)
.++++.+++.+++|+.+ +++++||.+.+ +|+.+.+.| |.||||+|++..
T Consensus 156 ~~i~~~~~~~~~~Li~~--~g~v~Gv~~~~~~~g~~~~i~A-kaVILATGG~g~ 206 (897)
T PRK13800 156 ERIRIENRLMPVRVLTE--GGRAVGAAALNTRTGEFVTVGA-KAVILATGPCGR 206 (897)
T ss_pred CCcEEEeceeeEEEEee--CCEEEEEEEEecCCCcEEEEEC-CEEEECCCcccc
Confidence 47999999999999987 68999999764 577778999 699999999863
No 72
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=99.16 E-value=1.3e-09 Score=110.74 Aligned_cols=40 Identities=28% Similarity=0.589 Sum_probs=36.2
Q ss_pred CCCCcccEEEECCCchHHHHHhHhhcCCCceEEEEecCCCC
Q psy10417 19 RLLDEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDED 59 (385)
Q Consensus 19 ~~~~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~ 59 (385)
.+.+.|||||||||++|+.+|++||++ |++|+|||+++..
T Consensus 2 ~~~~~~DVvIIGGGi~G~~~A~~la~r-Gl~V~LvEk~d~~ 41 (508)
T PRK12266 2 TMMETYDLLVIGGGINGAGIARDAAGR-GLSVLLCEQDDLA 41 (508)
T ss_pred CCCCcCCEEEECcCHHHHHHHHHHHHC-CCeEEEEecCCCC
Confidence 356789999999999999999999999 9999999998653
No 73
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=99.15 E-value=3.9e-10 Score=104.26 Aligned_cols=35 Identities=37% Similarity=0.381 Sum_probs=32.7
Q ss_pred CcccEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417 22 DEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD 57 (385)
Q Consensus 22 ~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~ 57 (385)
.++||+|||+|++|+++|++|+++ |++|+|||+..
T Consensus 24 ~~~DVvIVGgGpAGl~AA~~la~~-G~~V~liEk~~ 58 (257)
T PRK04176 24 LEVDVAIVGAGPSGLTAAYYLAKA-GLKVAVFERKL 58 (257)
T ss_pred ccCCEEEECccHHHHHHHHHHHhC-CCeEEEEecCC
Confidence 468999999999999999999998 99999999864
No 74
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.14 E-value=1.1e-09 Score=111.24 Aligned_cols=56 Identities=16% Similarity=0.207 Sum_probs=42.9
Q ss_pred hccCCCeEEEeCcEEEEEEEcCCCCeEEEEEEEeC-CeEEEEEeCcEEEEcCCCcccHHHHH
Q psy10417 264 IIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVKN-GHKRSVFARKEVIVSSGAFNSPKLLM 324 (385)
Q Consensus 264 ~~~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~~-g~~~~i~a~k~VVlAaGa~~tp~LL~ 324 (385)
.+.+.|++++.+++|++|..+ ++ ..+|.+.++ |++++++| +.||.|+|+ ++..++.
T Consensus 164 ~a~~~Ga~i~~~~~V~~i~~~--~~-~~~v~~~~~~g~~~~i~a-~~VVnAaG~-wa~~l~~ 220 (502)
T PRK13369 164 DAAERGATILTRTRCVSARRE--GG-LWRVETRDADGETRTVRA-RALVNAAGP-WVTDVIH 220 (502)
T ss_pred HHHHCCCEEecCcEEEEEEEc--CC-EEEEEEEeCCCCEEEEEe-cEEEECCCc-cHHHHHh
Confidence 345689999999999999876 34 345766654 56678999 489999996 6677765
No 75
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=99.14 E-value=3.5e-09 Score=106.30 Aligned_cols=68 Identities=25% Similarity=0.261 Sum_probs=45.9
Q ss_pred HhhhhhccCCCeEEEeCcEEEEEEEcCCCCeEEEEEE--EeCCeEEEEEeCcEEEEcCCCcccHHHHHHcCCCC
Q psy10417 259 AYLKPIIDRTNLHVIKNSRVVKIIIDPISKQAKGVEL--VKNGHKRSVFARKEVIVSSGAFNSPKLLMLSGVGP 330 (385)
Q Consensus 259 ~~l~~~~~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~--~~~g~~~~i~a~k~VVlAaGa~~tp~LL~~Sgig~ 330 (385)
++...+.++.|++|+++++|++|..++ ++.++ |.+ ...++..+++|+ .||+|||+ ++.+|+..+|+.+
T Consensus 189 aL~~~l~~~~Gv~i~~~~~V~~I~~~~-d~~w~-v~v~~t~~g~~~~i~Ad-~VV~AAGa-wS~~La~~~Gi~~ 258 (497)
T PRK13339 189 KLAKHLESHPNAQVKYNHEVVDLERLS-DGGWE-VTVKDRNTGEKREQVAD-YVFIGAGG-GAIPLLQKSGIPE 258 (497)
T ss_pred HHHHHHHhCCCcEEEeCCEEEEEEECC-CCCEE-EEEEecCCCceEEEEcC-EEEECCCc-chHHHHHHcCCCc
Confidence 344433345699999999999998763 23332 332 223333368895 89999997 7788999988753
No 76
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=99.14 E-value=3.5e-10 Score=104.28 Aligned_cols=36 Identities=39% Similarity=0.448 Sum_probs=33.4
Q ss_pred CcccEEEECCCchHHHHHhHhhcCCCceEEEEecCCC
Q psy10417 22 DEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDE 58 (385)
Q Consensus 22 ~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~ 58 (385)
.+|||+|||+|++|+++|+.|+++ |.+|+||||...
T Consensus 20 ~~~DVvIVGgGpAGL~aA~~la~~-G~~V~vlEk~~~ 55 (254)
T TIGR00292 20 AESDVIIVGAGPSGLTAAYYLAKN-GLKVCVLERSLA 55 (254)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHC-CCcEEEEecCCC
Confidence 379999999999999999999998 999999999753
No 77
>PLN02661 Putative thiazole synthesis
Probab=99.11 E-value=6.7e-10 Score=105.69 Aligned_cols=56 Identities=18% Similarity=0.273 Sum_probs=42.2
Q ss_pred hhhhhccCCCeEEEeCcEEEEEEEcCCCCeEEEEEEE------eC-C----eEEEEEeCcEEEEcCCCcc
Q psy10417 260 YLKPIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELV------KN-G----HKRSVFARKEVIVSSGAFN 318 (385)
Q Consensus 260 ~l~~~~~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~------~~-g----~~~~i~a~k~VVlAaGa~~ 318 (385)
++..+.++.|++|+.++.|++|+.+ ++++.||.+. .. + ....++| |.||+|+|.-.
T Consensus 178 Li~ka~~~~gVkI~~~t~V~DLI~~--~grVaGVVvnw~~v~~~~~~~s~~dp~~I~A-kaVVlATGh~g 244 (357)
T PLN02661 178 IMSKLLARPNVKLFNAVAAEDLIVK--GDRVGGVVTNWALVAQNHDTQSCMDPNVMEA-KVVVSSCGHDG 244 (357)
T ss_pred HHHHHHhcCCCEEEeCeEeeeEEec--CCEEEEEEeecchhhhccCCCCccceeEEEC-CEEEEcCCCCC
Confidence 4444556689999999999999998 6899999863 11 1 2347899 58999999543
No 78
>PRK08401 L-aspartate oxidase; Provisional
Probab=99.08 E-value=2.1e-09 Score=108.15 Aligned_cols=33 Identities=30% Similarity=0.454 Sum_probs=31.4
Q ss_pred ccEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417 24 YDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD 57 (385)
Q Consensus 24 ~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~ 57 (385)
+||||||+|.+|+++|.+++++ |.+|+||||+.
T Consensus 2 ~DVvVVGaG~AGl~AAi~aae~-G~~V~liek~~ 34 (466)
T PRK08401 2 MKVGIVGGGLAGLTAAISLAKK-GFDVTIIGPGI 34 (466)
T ss_pred CeEEEECccHHHHHHHHHHHHC-CCeEEEEeCCC
Confidence 6999999999999999999998 99999999974
No 79
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=99.08 E-value=5.3e-09 Score=103.85 Aligned_cols=41 Identities=27% Similarity=0.405 Sum_probs=37.8
Q ss_pred CCCcccEEEECCCchHHHHHhHhhcCCCceEEEEecCCCCCc
Q psy10417 20 LLDEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDEDRI 61 (385)
Q Consensus 20 ~~~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~~~ 61 (385)
|+++|||||||+|.+||++|..|+++ |++|++||+.++.+.
T Consensus 1 m~~~~DViViGtGL~e~ilAa~Ls~~-GkkVLhlD~n~~yGG 41 (443)
T PTZ00363 1 MDETYDVIVCGTGLKECILSGLLSVN-GKKVLHMDRNPYYGG 41 (443)
T ss_pred CCCcceEEEECCChHHHHHHhhhhhC-CCEEEEecCCCCcCc
Confidence 56789999999999999999999998 999999999987743
No 80
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=99.07 E-value=1.8e-09 Score=107.41 Aligned_cols=36 Identities=47% Similarity=0.691 Sum_probs=33.7
Q ss_pred CcccEEEECCCchHHHHHhHhhcCCCceEEEEecCCC
Q psy10417 22 DEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDE 58 (385)
Q Consensus 22 ~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~ 58 (385)
++|||||||+|++|+++|+.||++ |++|+||||+..
T Consensus 4 ~~~DViIVGaGpAG~~aA~~La~~-G~~V~llEr~~~ 39 (428)
T PRK10157 4 DIFDAIIVGAGLAGSVAALVLARE-GAQVLVIERGNS 39 (428)
T ss_pred ccCcEEEECcCHHHHHHHHHHHhC-CCeEEEEEcCCC
Confidence 469999999999999999999998 999999999864
No 81
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=99.07 E-value=3.4e-09 Score=105.72 Aligned_cols=61 Identities=10% Similarity=0.171 Sum_probs=45.8
Q ss_pred hhhhccCCCeEEEeCcEEEEEEEcCCCCeEEEEEEEeCCeEEEEEeCcEEEEcCCCcccHHHHH
Q psy10417 261 LKPIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVKNGHKRSVFARKEVIVSSGAFNSPKLLM 324 (385)
Q Consensus 261 l~~~~~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~~g~~~~i~a~k~VVlAaGa~~tp~LL~ 324 (385)
|...+++.|++|++++.|++|+.++++++++||....++ ..+.+ |.||||+|++....-++
T Consensus 129 L~~~a~~~Gv~i~~~~~v~~l~~~~~~g~v~gv~~~~~~--~~i~a-k~VIlAtGG~~~n~~~~ 189 (432)
T TIGR02485 129 LYSSAERLGVEIRYGIAVDRIPPEAFDGAHDGPLTTVGT--HRITT-QALVLAAGGLGANRDWL 189 (432)
T ss_pred HHHHHHHcCCEEEeCCEEEEEEecCCCCeEEEEEEcCCc--EEEEc-CEEEEcCCCcccCHHHH
Confidence 434556789999999999999876324789998875332 47888 58999999998655433
No 82
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=99.04 E-value=3.4e-09 Score=93.11 Aligned_cols=36 Identities=42% Similarity=0.483 Sum_probs=30.3
Q ss_pred CcccEEEECCCchHHHHHhHhhcCCCceEEEEecCCC
Q psy10417 22 DEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDE 58 (385)
Q Consensus 22 ~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~ 58 (385)
.++||+|||+|++|+++|++||++ |+||+|+|+...
T Consensus 16 ~~~DV~IVGaGpaGl~aA~~La~~-g~kV~v~E~~~~ 51 (230)
T PF01946_consen 16 LEYDVAIVGAGPAGLTAAYYLAKA-GLKVAVIERKLS 51 (230)
T ss_dssp TEESEEEE--SHHHHHHHHHHHHH-TS-EEEEESSSS
T ss_pred ccCCEEEECCChhHHHHHHHHHHC-CCeEEEEecCCC
Confidence 479999999999999999999999 999999999643
No 83
>KOG2820|consensus
Probab=99.02 E-value=6e-09 Score=96.50 Aligned_cols=62 Identities=21% Similarity=0.119 Sum_probs=48.2
Q ss_pred hhhhhccCCCeEEEeCcEEEEEEEcCCCCeEEEEEEEeCCeEEEEEeCcEEEEcCCCcccHHHHHHc
Q psy10417 260 YLKPIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVKNGHKRSVFARKEVIVSSGAFNSPKLLMLS 326 (385)
Q Consensus 260 ~l~~~~~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~~g~~~~i~a~k~VVlAaGa~~tp~LL~~S 326 (385)
.+...+++.|+.++.+..|..+.+.+..+..++|.+.++. .+.| |.+|+++|+ ++.+||..|
T Consensus 158 ~~~~~~~~~G~i~~dg~~v~~~~~~~e~~~~v~V~Tt~gs---~Y~a-kkiI~t~Ga-Wi~klL~~~ 219 (399)
T KOG2820|consen 158 ALQDKARELGVIFRDGEKVKFIKFVDEEGNHVSVQTTDGS---IYHA-KKIIFTVGA-WINKLLPTS 219 (399)
T ss_pred HHHHHHHHcCeEEecCcceeeEeeccCCCceeEEEeccCC---eeec-ceEEEEecH-HHHhhcCcc
Confidence 3444566789999999999999987556777788887753 5778 479999998 677787764
No 84
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=98.99 E-value=2.5e-08 Score=100.60 Aligned_cols=60 Identities=20% Similarity=0.325 Sum_probs=46.3
Q ss_pred hhhhccCCCeEEEeCcEEEEEEEcCCC--CeEEEEEEEeCC--eEEEEEeCcEEEEcCCCcccH
Q psy10417 261 LKPIIDRTNLHVIKNSRVVKIIIDPIS--KQAKGVELVKNG--HKRSVFARKEVIVSSGAFNSP 320 (385)
Q Consensus 261 l~~~~~~~g~~i~~~~~V~~i~~~~~~--~~v~GV~~~~~g--~~~~i~a~k~VVlAaGa~~tp 320 (385)
|...++..|++|+++|+|++|..+.++ ++|+||++..+| +...+.+++.||+++|++...
T Consensus 232 L~~~Le~~GV~f~~~t~VtdL~~~~d~~~~~VtgI~~~~~~~~~~I~l~~~DlVivTnGs~t~n 295 (576)
T PRK13977 232 LIKYLEDHGVDFQYGTKVTDIDFDITGGKKTATAIHLTRNGKEETIDLTEDDLVFVTNGSITES 295 (576)
T ss_pred HHHHHHhCCCEEEeCCEEEEEEEcCCCCceEEEEEEEEeCCceeEEEecCCCEEEEeCCcCccc
Confidence 334566789999999999999986223 789999998643 344567778999999998643
No 85
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=98.98 E-value=1.9e-09 Score=104.75 Aligned_cols=57 Identities=25% Similarity=0.471 Sum_probs=45.8
Q ss_pred HhhhhhccCCCeEEEeCcEEEEEEEcCCCC-eEEEEEEEeCC-eEEEEEeCcEEEEcCCCcc
Q psy10417 259 AYLKPIIDRTNLHVIKNSRVVKIIIDPISK-QAKGVELVKNG-HKRSVFARKEVIVSSGAFN 318 (385)
Q Consensus 259 ~~l~~~~~~~g~~i~~~~~V~~i~~~~~~~-~v~GV~~~~~g-~~~~i~a~k~VVlAaGa~~ 318 (385)
+++..+.+++|++|+.++.+.+|+.+ ++ .+.||.+.+.+ +...++| +.||||+|++.
T Consensus 138 ~L~~~v~~~p~I~v~e~~~a~~li~~--~~~~~~Gv~~~~~~~~~~~~~a-~~vVLATGG~g 196 (518)
T COG0029 138 ALLKKVRNRPNITVLEGAEALDLIIE--DGIGVAGVLVLNRNGELGTFRA-KAVVLATGGLG 196 (518)
T ss_pred HHHHHHhcCCCcEEEecchhhhhhhc--CCceEeEEEEecCCCeEEEEec-CeEEEecCCCc
Confidence 34444556799999999999999998 45 56699998754 5778999 58999999876
No 86
>KOG0042|consensus
Probab=98.98 E-value=9.3e-10 Score=107.27 Aligned_cols=82 Identities=21% Similarity=0.295 Sum_probs=59.5
Q ss_pred CceeeeeeccccCCcccchhHHhhhhhccCCCeEEEeCcEEEEEEEcCCCCeEEEEEEEe--CCeEEEEEeCcEEEEcCC
Q psy10417 238 KIGFSIVQSTIKNGRRMTASKAYLKPIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVK--NGHKRSVFARKEVIVSSG 315 (385)
Q Consensus 238 ~~g~~~~~~~~~~g~r~~~~~~~l~~~~~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~--~g~~~~i~a~k~VVlAaG 315 (385)
.+|......+..+.+|.....++ -+.+.|.+++.+.+|.+|+.++ ++++.|++++| .|+++.|+| |.||-|+|
T Consensus 210 L~Ga~VYyDGQ~nDaRmnl~vAl---TA~r~GA~v~Nh~ev~~Llkd~-~~kv~Ga~~rD~iTG~e~~I~A-k~VVNATG 284 (680)
T KOG0042|consen 210 LKGAMVYYDGQHNDARMNLAVAL---TAARNGATVLNHVEVVSLLKDK-DGKVIGARARDHITGKEYEIRA-KVVVNATG 284 (680)
T ss_pred ceeEEEEecCCCchHHHHHHHHH---HHHhcchhhhhHHHHHHHhhCC-CCceeeeEEEEeecCcEEEEEE-EEEEeCCC
Confidence 55655554444455555544332 2346799999999999999987 46899999997 589999999 68999999
Q ss_pred CcccHHHHHH
Q psy10417 316 AFNSPKLLML 325 (385)
Q Consensus 316 a~~tp~LL~~ 325 (385)
.|. ..|..+
T Consensus 285 pfs-DsIr~M 293 (680)
T KOG0042|consen 285 PFS-DSIRKM 293 (680)
T ss_pred Ccc-HHHHhh
Confidence 754 555544
No 87
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=98.98 E-value=4.6e-10 Score=111.63 Aligned_cols=62 Identities=26% Similarity=0.427 Sum_probs=0.0
Q ss_pred hhhhccCCCeEEEeCcEEEEEEEcCCCCeEEEEEEEeCCeEEEEEeCcEEEEcCCCcccHHHHHHcCC
Q psy10417 261 LKPIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVKNGHKRSVFARKEVIVSSGAFNSPKLLMLSGV 328 (385)
Q Consensus 261 l~~~~~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~~g~~~~i~a~k~VVlAaGa~~tp~LL~~Sgi 328 (385)
+...+...|++|++++.|.+++.+ ++++++|.+...+...+|+| +.||-|+|- ..|+.++|.
T Consensus 96 l~~~l~e~gv~v~~~t~v~~v~~~--~~~i~~V~~~~~~g~~~i~A-~~~IDaTG~---g~l~~~aG~ 157 (428)
T PF12831_consen 96 LDEMLAEAGVEVLLGTRVVDVIRD--GGRITGVIVETKSGRKEIRA-KVFIDATGD---GDLAALAGA 157 (428)
T ss_dssp --------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccc--cccccccccccccccccccc-ccccccccc---ccccccccc
Confidence 444445689999999999999998 78999999986444778999 589999993 577778874
No 88
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=98.97 E-value=3.3e-09 Score=104.56 Aligned_cols=37 Identities=46% Similarity=0.751 Sum_probs=34.7
Q ss_pred CcccEEEECCCchHHHHHhHhhcCCCceEEEEecCCCC
Q psy10417 22 DEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDED 59 (385)
Q Consensus 22 ~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~ 59 (385)
.+|||||||+|+||++||+.||++ |.+|+||||+...
T Consensus 2 ~~~DVvIVGaGPAGs~aA~~la~~-G~~VlvlEk~~~~ 38 (396)
T COG0644 2 MEYDVVIVGAGPAGSSAARRLAKA-GLDVLVLEKGSEP 38 (396)
T ss_pred ceeeEEEECCchHHHHHHHHHHHc-CCeEEEEecCCCC
Confidence 579999999999999999999999 9999999998754
No 89
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=98.97 E-value=6.5e-09 Score=105.80 Aligned_cols=53 Identities=19% Similarity=0.330 Sum_probs=42.4
Q ss_pred hccCCCeEEEeCcEEEEEEEcCCCCeEEEEEEEe--CCeEEEEEeCcEEEEcCCCcc
Q psy10417 264 IIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVK--NGHKRSVFARKEVIVSSGAFN 318 (385)
Q Consensus 264 ~~~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~--~g~~~~i~a~k~VVlAaGa~~ 318 (385)
..+..+++++.+..|++|+.++ ++.+.||...+ +++.+.+++ |.||+|+|++.
T Consensus 148 ~~~~~~~~~~~~~~~~~l~~~~-~~~v~Gvv~~~~~~g~~~~~~a-kavilaTGG~g 202 (562)
T COG1053 148 LLKFSGIEIFDEYFVLDLLVDD-GGGVAGVVARDLRTGELYVFRA-KAVILATGGAG 202 (562)
T ss_pred HHHhhcchhhhhhhhhhheecC-CCcEEEEEEEEecCCcEEEEec-CcEEEccCCce
Confidence 3344678999999999999885 34488888774 577778888 68999999988
No 90
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=98.96 E-value=2e-08 Score=98.31 Aligned_cols=38 Identities=32% Similarity=0.467 Sum_probs=34.8
Q ss_pred CCcccEEEECCCchHHHHHhHhhcCCCceEEEEecCCCC
Q psy10417 21 LDEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDED 59 (385)
Q Consensus 21 ~~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~ 59 (385)
+.++||||||+|++|+++|++|+++ |.+|+|+|++...
T Consensus 2 ~~~~~vvVIGgGi~Gls~A~~La~~-G~~V~vie~~~~~ 39 (387)
T COG0665 2 SMKMDVVIIGGGIVGLSAAYYLAER-GADVTVLEAGEAG 39 (387)
T ss_pred CCcceEEEECCcHHHHHHHHHHHHc-CCEEEEEecCccC
Confidence 5679999999999999999999999 9999999997643
No 91
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=98.95 E-value=8.6e-09 Score=90.19 Aligned_cols=33 Identities=42% Similarity=0.535 Sum_probs=31.6
Q ss_pred cccEEEECCCchHHHHHhHhhcCCCceEEEEecC
Q psy10417 23 EYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAG 56 (385)
Q Consensus 23 ~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G 56 (385)
+.||+|||+|++|++||++||++ |.||+|+||.
T Consensus 30 esDViIVGaGPsGLtAAyyLAk~-g~kV~i~E~~ 62 (262)
T COG1635 30 ESDVIIVGAGPSGLTAAYYLAKA-GLKVAIFERK 62 (262)
T ss_pred hccEEEECcCcchHHHHHHHHhC-CceEEEEEee
Confidence 67999999999999999999999 9999999985
No 92
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=98.95 E-value=9.3e-09 Score=107.91 Aligned_cols=34 Identities=35% Similarity=0.656 Sum_probs=32.3
Q ss_pred cccEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417 23 EYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD 57 (385)
Q Consensus 23 ~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~ 57 (385)
.+||||||+|++|+++|++|+++ |.+|+|||++.
T Consensus 260 ~~dVvIIGaGIaG~s~A~~La~~-G~~V~VlE~~~ 293 (662)
T PRK01747 260 ARDAAIIGGGIAGAALALALARR-GWQVTLYEADE 293 (662)
T ss_pred CCCEEEECccHHHHHHHHHHHHC-CCeEEEEecCC
Confidence 57999999999999999999999 99999999975
No 93
>PRK10015 oxidoreductase; Provisional
Probab=98.92 E-value=5.4e-09 Score=103.99 Aligned_cols=36 Identities=47% Similarity=0.781 Sum_probs=33.7
Q ss_pred CcccEEEECCCchHHHHHhHhhcCCCceEEEEecCCC
Q psy10417 22 DEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDE 58 (385)
Q Consensus 22 ~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~ 58 (385)
++|||||||+|++|+++|+.||++ |.+|+||||+..
T Consensus 4 ~~~DViIVGgGpAG~~aA~~LA~~-G~~VlliEr~~~ 39 (429)
T PRK10015 4 DKFDAIVVGAGVAGSVAALVMARA-GLDVLVIERGDS 39 (429)
T ss_pred cccCEEEECcCHHHHHHHHHHHhC-CCeEEEEecCCC
Confidence 469999999999999999999998 999999999864
No 94
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.84 E-value=7e-09 Score=104.80 Aligned_cols=39 Identities=31% Similarity=0.490 Sum_probs=35.6
Q ss_pred CcccEEEECCCchHHHHHhHhhcCCCceEEEEecCCCCCc
Q psy10417 22 DEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDEDRI 61 (385)
Q Consensus 22 ~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~~~ 61 (385)
+.+||||||||.+|+++|..||++ |++|+||||......
T Consensus 2 ~~~dvvVIGaG~~GL~aAa~LA~~-G~~V~VlE~~~~~GG 40 (487)
T COG1233 2 PMYDVVVIGAGLNGLAAAALLARA-GLKVTVLEKNDRVGG 40 (487)
T ss_pred CCccEEEECCChhHHHHHHHHHhC-CCEEEEEEecCCCCc
Confidence 468999999999999999999999 999999999776643
No 95
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=98.84 E-value=3e-08 Score=89.39 Aligned_cols=89 Identities=20% Similarity=0.177 Sum_probs=58.4
Q ss_pred CCeEEEeCcEEEEEEEcCCCCeEEEEEEEeCCeEEEEEeCcEEEEcCCCcccHHHHHHcCCCChhhhhh-----------
Q psy10417 268 TNLHVIKNSRVVKIIIDPISKQAKGVELVKNGHKRSVFARKEVIVSSGAFNSPKLLMLSGVGPREHLTE----------- 336 (385)
Q Consensus 268 ~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~~g~~~~i~a~k~VVlAaGa~~tp~LL~~Sgig~~~~l~~----------- 336 (385)
.+++|+++++|++|-..+ +.. -+...+++ ....++ .|||+.-+-+++.||--+..+-+..++.
T Consensus 116 tdL~V~~~~rVt~v~~~~--~~W-~l~~~~g~--~~~~~d-~vvla~PAPQ~~~LLt~~~~~~p~~l~~~~a~V~y~Pc~ 189 (331)
T COG3380 116 TDLTVVLETRVTEVARTD--NDW-TLHTDDGT--RHTQFD-DVVLAIPAPQTATLLTTDADDLPAALRAALADVVYAPCW 189 (331)
T ss_pred ccchhhhhhhhhhheecC--Cee-EEEecCCC--cccccc-eEEEecCCCcchhhcCcccccchHHHHHhhccceehhHH
Confidence 579999999999998763 221 13332222 245664 7999999999999986553333332332
Q ss_pred ---cCCCcccccc-chhhhhhccCCCceEEE
Q psy10417 337 ---LGIPVVQDLR-VGDNLMEHVAYSALTFG 363 (385)
Q Consensus 337 ---~gi~~~~~~p-vG~~l~dh~~~~~~~~~ 363 (385)
.|.+...+.| =|-.+.+|+.. .+...
T Consensus 190 s~~lg~~q~l~~P~~G~~vdg~~la-Wla~d 219 (331)
T COG3380 190 SAVLGYPQPLDRPWPGNFVDGHPLA-WLARD 219 (331)
T ss_pred HHHhcCCccCCCCCCCcccCCCeee-eeecc
Confidence 5777677788 78777778863 55544
No 96
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=98.83 E-value=2.8e-08 Score=91.92 Aligned_cols=63 Identities=22% Similarity=0.200 Sum_probs=46.9
Q ss_pred hhhhccCCCeEEEeCcEEEEEEEcCCCCeEEEEEEEe---C----C--------eEEEEEeCcEEEEcCCCcccHHHHHH
Q psy10417 261 LKPIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVK---N----G--------HKRSVFARKEVIVSSGAFNSPKLLML 325 (385)
Q Consensus 261 l~~~~~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~---~----g--------~~~~i~a~k~VVlAaGa~~tp~LL~~ 325 (385)
+..+..+..+++...++|.+|+.. +++++||.-.- + | ..+++.|. .||+++|+|.-.+-|.+
T Consensus 159 ~re~~~~~~v~f~~RHrV~~l~~t--~grvtGv~GdVLeps~v~RG~~SSR~~~GdFef~A~-aviv~SGGIGGnhelVR 235 (552)
T COG3573 159 LREAQRRGRVTFRFRHRVDGLTTT--GGRVTGVRGDVLEPSDVERGQPSSREVVGDFEFSAS-AVIVASGGIGGNHELVR 235 (552)
T ss_pred HHHHHhCCceEEEeeeeccceEee--CCeEeeecccccCCCccccCCCccceeecceEEeee-eEEEecCCcCCCHHHHH
Confidence 444455778999999999999998 78999987431 1 1 13678884 89999999986665554
Q ss_pred c
Q psy10417 326 S 326 (385)
Q Consensus 326 S 326 (385)
-
T Consensus 236 r 236 (552)
T COG3573 236 R 236 (552)
T ss_pred h
Confidence 3
No 97
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=98.83 E-value=1.8e-08 Score=102.47 Aligned_cols=35 Identities=37% Similarity=0.645 Sum_probs=32.7
Q ss_pred CCcccEEEECCCchHHHHHhHhhcCCCceEEEEecC
Q psy10417 21 LDEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAG 56 (385)
Q Consensus 21 ~~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G 56 (385)
..+|||||||||+||+.||..+|+. |.+|+|+|+.
T Consensus 2 ~~~yDVIVVGGGpAG~eAA~~aAR~-G~kV~LiE~~ 36 (618)
T PRK05192 2 PEEYDVIVVGGGHAGCEAALAAARM-GAKTLLLTHN 36 (618)
T ss_pred CccceEEEECchHHHHHHHHHHHHc-CCcEEEEecc
Confidence 4579999999999999999999998 9999999986
No 98
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=98.82 E-value=5.7e-08 Score=98.57 Aligned_cols=58 Identities=21% Similarity=0.409 Sum_probs=45.4
Q ss_pred hhhhccCCCeEEEeCcEEEEEEEcCCCCeEEEEEEEeCCeEEEEEeCcEEEEcCCCcccHHHHH
Q psy10417 261 LKPIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVKNGHKRSVFARKEVIVSSGAFNSPKLLM 324 (385)
Q Consensus 261 l~~~~~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~~g~~~~i~a~k~VVlAaGa~~tp~LL~ 324 (385)
|...+++.|++|++++.|++|..+ ++++.+|.+.++. ++.++ .||+|++...+-..|+
T Consensus 235 L~~~~~~~G~~i~~~~~V~~I~~~--~~~~~gv~~~~g~---~~~ad-~vV~a~~~~~~~~~Ll 292 (493)
T TIGR02730 235 LVKGLEKHGGQIRYRARVTKIILE--NGKAVGVKLADGE---KIYAK-RIVSNATRWDTFGKLL 292 (493)
T ss_pred HHHHHHHCCCEEEeCCeeeEEEec--CCcEEEEEeCCCC---EEEcC-EEEECCChHHHHHHhC
Confidence 444566789999999999999987 6789999887543 57885 7999999876665443
No 99
>KOG2415|consensus
Probab=98.81 E-value=2e-08 Score=95.34 Aligned_cols=83 Identities=13% Similarity=0.188 Sum_probs=61.3
Q ss_pred hhHHhhhhhccCCCeEEEeCcEEEEEEEcCCCCeEEEEEEEeC-----C-------eEEEEEeCcEEEEcCCCcc--cHH
Q psy10417 256 ASKAYLKPIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVKN-----G-------HKRSVFARKEVIVSSGAFN--SPK 321 (385)
Q Consensus 256 ~~~~~l~~~~~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~~-----g-------~~~~i~a~k~VVlAaGa~~--tp~ 321 (385)
-...||...++.-|++|..+..+.++++++ ++.|.||.+.|- | +-..+.| |..|.|-|.-. |-+
T Consensus 184 ~~v~wLg~kAEe~GvEiyPg~aaSevly~e-dgsVkGiaT~D~GI~k~G~pKd~FerGme~ha-k~TifAEGc~G~Lskq 261 (621)
T KOG2415|consen 184 QLVRWLGEKAEELGVEIYPGFAASEVLYDE-DGSVKGIATNDVGISKDGAPKDTFERGMEFHA-KVTIFAEGCHGSLSKQ 261 (621)
T ss_pred HHHHHHHHHHHhhCceeccccchhheeEcC-CCcEeeEeeccccccCCCCccccccccceecc-eeEEEeccccchhHHH
Confidence 456688777888999999999999999987 689999998762 1 2246788 57888887654 667
Q ss_pred HHHHcCCCChhhhhhcCCC
Q psy10417 322 LLMLSGVGPREHLTELGIP 340 (385)
Q Consensus 322 LL~~Sgig~~~~l~~~gi~ 340 (385)
++.+-++....+.+..||.
T Consensus 262 i~kkf~Lr~n~e~qtYglG 280 (621)
T KOG2415|consen 262 IIKKFDLRENCEPQTYGLG 280 (621)
T ss_pred HHHHhCcccCCCcceeccc
Confidence 7777666554555555553
No 100
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.81 E-value=1.1e-07 Score=94.26 Aligned_cols=39 Identities=33% Similarity=0.466 Sum_probs=35.4
Q ss_pred CCCCcccEEEECCCchHHHHHhHhhcCCCceEEEEecCCC
Q psy10417 19 RLLDEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDE 58 (385)
Q Consensus 19 ~~~~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~ 58 (385)
.+...+||+|||+|++|+++|..|+++ |++|+|+|+.+.
T Consensus 14 ~~~~~~dV~IvGaG~aGl~~A~~L~~~-G~~v~v~E~~~~ 52 (415)
T PRK07364 14 TRSLTYDVAIVGGGIVGLTLAAALKDS-GLRIALIEAQPA 52 (415)
T ss_pred CCccccCEEEECcCHHHHHHHHHHhcC-CCEEEEEecCCc
Confidence 445579999999999999999999998 999999999864
No 101
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=98.75 E-value=9.5e-08 Score=97.14 Aligned_cols=58 Identities=16% Similarity=0.236 Sum_probs=44.3
Q ss_pred hhhhccCCCeEEEeCcEEEEEEEcCCCCeEEEEEEEeCCeEEEEEeCcEEEEcCCCcccHHHHH
Q psy10417 261 LKPIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVKNGHKRSVFARKEVIVSSGAFNSPKLLM 324 (385)
Q Consensus 261 l~~~~~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~~g~~~~i~a~k~VVlAaGa~~tp~LL~ 324 (385)
+...+++.|++|++++.|++|..+ ++++++|++.++. .+.|+ .||+|++...+...|+
T Consensus 225 l~~~~~~~G~~i~~~~~V~~i~~~--~~~~~~V~~~~g~---~~~ad-~VI~a~~~~~~~~~l~ 282 (502)
T TIGR02734 225 MAKLAEDLGGELRLNAEVIRIETE--GGRATAVHLADGE---RLDAD-AVVSNADLHHTYRRLL 282 (502)
T ss_pred HHHHHHHCCCEEEECCeEEEEEee--CCEEEEEEECCCC---EEECC-EEEECCcHHHHHHHhc
Confidence 333456679999999999999987 6788888876542 57885 7999999766665554
No 102
>PRK06185 hypothetical protein; Provisional
Probab=98.73 E-value=1.2e-07 Score=93.82 Aligned_cols=59 Identities=19% Similarity=0.228 Sum_probs=43.2
Q ss_pred cCCCeEEEeCcEEEEEEEcCCCCeEEEEEEEeCCeEEEEEeCcEEEEcCCCcccHHHHHHcCCC
Q psy10417 266 DRTNLHVIKNSRVVKIIIDPISKQAKGVELVKNGHKRSVFARKEVIVSSGAFNSPKLLMLSGVG 329 (385)
Q Consensus 266 ~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~~g~~~~i~a~k~VVlAaGa~~tp~LL~~Sgig 329 (385)
+..|++++.++.|+++..+ ++++++|.+...+...+++++ .||.|.|+. |. +-...|+.
T Consensus 120 ~~~~v~i~~~~~v~~~~~~--~~~v~~v~~~~~~g~~~i~a~-~vI~AdG~~-S~-vr~~~gi~ 178 (407)
T PRK06185 120 AYPNFTLRMGAEVTGLIEE--GGRVTGVRARTPDGPGEIRAD-LVVGADGRH-SR-VRALAGLE 178 (407)
T ss_pred hCCCcEEEeCCEEEEEEEe--CCEEEEEEEEcCCCcEEEEeC-EEEECCCCc-hH-HHHHcCCC
Confidence 3468999999999999987 578888887753333578994 899999964 43 44445654
No 103
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=98.72 E-value=1.4e-06 Score=84.85 Aligned_cols=67 Identities=27% Similarity=0.293 Sum_probs=49.8
Q ss_pred hhhhhccCCCeEEEeCcEEEEEEEcCCCCeEEEEEEE--eCCeEEEEEeCcEEEEcCCCcccHHHHHHcCCCC
Q psy10417 260 YLKPIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELV--KNGHKRSVFARKEVIVSSGAFNSPKLLMLSGVGP 330 (385)
Q Consensus 260 ~l~~~~~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~--~~g~~~~i~a~k~VVlAaGa~~tp~LL~~Sgig~ 330 (385)
++..+.+++|++|.++++|++|....+ ++. -|.+. .+++...++| +-|++.||+ .+=.||..|||..
T Consensus 187 l~~~l~~~~~~~~~~~~eV~~i~r~~d-g~W-~v~~~~~~~~~~~~v~a-~FVfvGAGG-~aL~LLqksgi~e 255 (488)
T PF06039_consen 187 LVEYLQKQKGFELHLNHEVTDIKRNGD-GRW-EVKVKDLKTGEKREVRA-KFVFVGAGG-GALPLLQKSGIPE 255 (488)
T ss_pred HHHHHHhCCCcEEEecCEeCeeEECCC-CCE-EEEEEecCCCCeEEEEC-CEEEECCch-HhHHHHHHcCChh
Confidence 344344567999999999999998753 432 23333 3567779999 599999998 6788999999853
No 104
>KOG1298|consensus
Probab=98.72 E-value=4.3e-08 Score=92.32 Aligned_cols=56 Identities=21% Similarity=0.358 Sum_probs=43.9
Q ss_pred hhhccCCCeEEEeCcEEEEEEEcCCCCeEEEEEEEe-CCeEEEEEeCcEEEEcCCCcccHH
Q psy10417 262 KPIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVK-NGHKRSVFARKEVIVSSGAFNSPK 321 (385)
Q Consensus 262 ~~~~~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~-~g~~~~i~a~k~VVlAaGa~~tp~ 321 (385)
..+...+|+++..+ .|.+|+.| ++.++||+|.. .|++.+..|. .-|+|-|.|.+=|
T Consensus 155 ~ka~slpNV~~eeG-tV~sLlee--~gvvkGV~yk~k~gee~~~~Ap-LTvVCDGcfSnlR 211 (509)
T KOG1298|consen 155 KKAASLPNVRLEEG-TVKSLLEE--EGVVKGVTYKNKEGEEVEAFAP-LTVVCDGCFSNLR 211 (509)
T ss_pred HHHhcCCCeEEeee-eHHHHHhc--cCeEEeEEEecCCCceEEEecc-eEEEecchhHHHH
Confidence 33556789998775 68888777 67999999995 4677888995 8999999887654
No 105
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=98.71 E-value=3.2e-08 Score=97.66 Aligned_cols=32 Identities=31% Similarity=0.481 Sum_probs=29.4
Q ss_pred EEECCCchHHHHHhHhhcCCCceEEEEecCCCC
Q psy10417 27 IIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDED 59 (385)
Q Consensus 27 iIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~ 59 (385)
||||+|++|+++|..|+++ |.+|+||||.+..
T Consensus 1 vIIGgG~aGl~aAi~aa~~-G~~V~llEk~~~~ 32 (400)
T TIGR00275 1 IIIGGGAAGLMAAITAARE-GLSVLLLEKNKKI 32 (400)
T ss_pred CEEEEeHHHHHHHHHHHhc-CCcEEEEecCccc
Confidence 6999999999999999998 9999999997643
No 106
>PRK07208 hypothetical protein; Provisional
Probab=98.70 E-value=3.9e-07 Score=92.09 Aligned_cols=40 Identities=25% Similarity=0.376 Sum_probs=36.2
Q ss_pred CCCcccEEEECCCchHHHHHhHhhcCCCceEEEEecCCCCC
Q psy10417 20 LLDEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDEDR 60 (385)
Q Consensus 20 ~~~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~~ 60 (385)
|.+..||||||+|++|+++|++|+++ |.+|+|+|+.+...
T Consensus 1 ~~~~~~vvIiGaGisGL~aA~~L~~~-g~~v~v~E~~~~~G 40 (479)
T PRK07208 1 MTNKKSVVIIGAGPAGLTAAYELLKR-GYPVTVLEADPVVG 40 (479)
T ss_pred CCCCCcEEEECcCHHHHHHHHHHHHC-CCcEEEEecCCCCC
Confidence 35678999999999999999999998 99999999987664
No 107
>KOG2844|consensus
Probab=98.68 E-value=3.2e-07 Score=91.87 Aligned_cols=59 Identities=20% Similarity=0.261 Sum_probs=44.8
Q ss_pred hhhccCCCeEEEeCcEEEEEEEcCCCCeEEEEEEEeCCeEEEEEeCcEEEEcCCCcccHHHHHHcCC
Q psy10417 262 KPIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVKNGHKRSVFARKEVIVSSGAFNSPKLLMLSGV 328 (385)
Q Consensus 262 ~~~~~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~~g~~~~i~a~k~VVlAaGa~~tp~LL~~Sgi 328 (385)
..++++.|+.|+.+|.|++|... .++..||++..+ .|++. .||-|||. +.-..-.++|+
T Consensus 194 a~~A~~~GA~viE~cpV~~i~~~--~~~~~gVeT~~G----~iet~-~~VNaaGv-WAr~Vg~m~gv 252 (856)
T KOG2844|consen 194 ARAASALGALVIENCPVTGLHVE--TDKFGGVETPHG----SIETE-CVVNAAGV-WAREVGAMAGV 252 (856)
T ss_pred HHHHHhcCcEEEecCCcceEEee--cCCccceeccCc----ceecc-eEEechhH-HHHHhhhhcCC
Confidence 34567789999999999999987 445559998876 79996 79999995 44444455554
No 108
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=98.67 E-value=1.2e-07 Score=96.14 Aligned_cols=60 Identities=22% Similarity=0.212 Sum_probs=44.4
Q ss_pred hhhhccCCCeEEEeCcEEEEEEEcCCCCeEEEEEEEeC--CeEEEEEeCcEEEEcCCCcccHHHH
Q psy10417 261 LKPIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVKN--GHKRSVFARKEVIVSSGAFNSPKLL 323 (385)
Q Consensus 261 l~~~~~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~~--g~~~~i~a~k~VVlAaGa~~tp~LL 323 (385)
|...+++.|.+|+++++|++|+.+ ++++++|.+.++ ++...+.|+ .||+++....+.+||
T Consensus 238 L~~~~~~~G~~i~~~~~V~~I~~~--~~~~~gv~~~~~~~~~~~~~~ad-~VI~~~~~~~~~~ll 299 (492)
T TIGR02733 238 LVEALKRDGGNLLTGQRVTAIHTK--GGRAGWVVVVDSRKQEDLNVKAD-DVVANLPPQSLLELL 299 (492)
T ss_pred HHHHHHhcCCEEeCCceEEEEEEe--CCeEEEEEEecCCCCceEEEECC-EEEECCCHHHHHHhc
Confidence 333455679999999999999988 578889987754 222468895 799999876555544
No 109
>PRK06370 mercuric reductase; Validated
Probab=98.64 E-value=1.6e-06 Score=87.21 Aligned_cols=37 Identities=41% Similarity=0.558 Sum_probs=34.3
Q ss_pred CCCcccEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417 20 LLDEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD 57 (385)
Q Consensus 20 ~~~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~ 57 (385)
|+.+||+||||+|++|..+|.+|++. |++|+|+|++.
T Consensus 2 ~~~~~DvvVIG~GpaG~~aA~~aa~~-G~~v~lie~~~ 38 (463)
T PRK06370 2 PAQRYDAIVIGAGQAGPPLAARAAGL-GMKVALIERGL 38 (463)
T ss_pred CCccccEEEECCCHHHHHHHHHHHhC-CCeEEEEecCc
Confidence 56689999999999999999999998 99999999864
No 110
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=98.62 E-value=9.4e-08 Score=92.46 Aligned_cols=49 Identities=27% Similarity=0.485 Sum_probs=37.6
Q ss_pred ccCCCeEEEeCcEEEEEEEcCCCCeEEEEEEEeCCeEEEEEeCcEEEEcCCCcccH
Q psy10417 265 IDRTNLHVIKNSRVVKIIIDPISKQAKGVELVKNGHKRSVFARKEVIVSSGAFNSP 320 (385)
Q Consensus 265 ~~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~~g~~~~i~a~k~VVlAaGa~~tp 320 (385)
.+.+|++|+ +.+|++|..+ +++|.||.+.+ |. .+.++ .||+|+|.|.+.
T Consensus 106 ~~~~nl~i~-~~~V~~l~~e--~~~v~GV~~~~-g~--~~~a~-~vVlaTGtfl~G 154 (392)
T PF01134_consen 106 ESHPNLTII-QGEVTDLIVE--NGKVKGVVTKD-GE--EIEAD-AVVLATGTFLNG 154 (392)
T ss_dssp HTSTTEEEE-ES-EEEEEEC--TTEEEEEEETT-SE--EEEEC-EEEE-TTTGBTS
T ss_pred hcCCCeEEE-EcccceEEec--CCeEEEEEeCC-CC--EEecC-EEEEecccccCc
Confidence 346899997 6799999998 79999998865 33 68894 899999995443
No 111
>KOG4254|consensus
Probab=98.62 E-value=7.1e-08 Score=92.56 Aligned_cols=58 Identities=22% Similarity=0.346 Sum_probs=48.4
Q ss_pred hhhhccCCCeEEEeCcEEEEEEEcCCCCeEEEEEEEeCCeEEEEEeCcEEEEcCCCcccHHHHH
Q psy10417 261 LKPIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVKNGHKRSVFARKEVIVSSGAFNSPKLLM 324 (385)
Q Consensus 261 l~~~~~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~~g~~~~i~a~k~VVlAaGa~~tp~LL~ 324 (385)
+.+.+++.|.+|.+++.|.+|+.| +|++.||.+.++. ++++ |.||..|+.+.|=.-|+
T Consensus 270 ia~~~~~~GaeI~tka~Vq~Illd--~gka~GV~L~dG~---ev~s-k~VvSNAt~~~Tf~kLl 327 (561)
T KOG4254|consen 270 IAEGAKRAGAEIFTKATVQSILLD--SGKAVGVRLADGT---EVRS-KIVVSNATPWDTFEKLL 327 (561)
T ss_pred HHHHHHhccceeeehhhhhheecc--CCeEEEEEecCCc---EEEe-eeeecCCchHHHHHHhC
Confidence 445677899999999999999999 6999999999864 5777 68999999888874444
No 112
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=98.62 E-value=2.7e-07 Score=92.47 Aligned_cols=68 Identities=19% Similarity=0.351 Sum_probs=46.7
Q ss_pred hHHhhhhhccCCCeE--EEeCcEEEEEEEcCCCCeEEEEEEEeCC-eEEEEEeCcEEEEcCCCcccHHHHHHcCC
Q psy10417 257 SKAYLKPIIDRTNLH--VIKNSRVVKIIIDPISKQAKGVELVKNG-HKRSVFARKEVIVSSGAFNSPKLLMLSGV 328 (385)
Q Consensus 257 ~~~~l~~~~~~~g~~--i~~~~~V~~i~~~~~~~~v~GV~~~~~g-~~~~i~a~k~VVlAaGa~~tp~LL~~Sgi 328 (385)
...||...+++.++. |+++++|++|..+ +++.+ |.+.+++ ...+..++ .||+|+|.+..|++..-.|+
T Consensus 113 v~~YL~~~a~~fgl~~~I~~~t~V~~V~~~--~~~w~-V~~~~~~~~~~~~~~d-~VIvAtG~~~~P~~P~ipG~ 183 (461)
T PLN02172 113 VLAYLQDFAREFKIEEMVRFETEVVRVEPV--DGKWR-VQSKNSGGFSKDEIFD-AVVVCNGHYTEPNVAHIPGI 183 (461)
T ss_pred HHHHHHHHHHHcCCcceEEecCEEEEEeec--CCeEE-EEEEcCCCceEEEEcC-EEEEeccCCCCCcCCCCCCc
Confidence 445777777777877 9999999999876 44432 4444332 33345675 79999999888887654444
No 113
>PRK08244 hypothetical protein; Provisional
Probab=98.62 E-value=3.4e-07 Score=92.86 Aligned_cols=35 Identities=34% Similarity=0.506 Sum_probs=32.7
Q ss_pred cccEEEECCCchHHHHHhHhhcCCCceEEEEecCCC
Q psy10417 23 EYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDE 58 (385)
Q Consensus 23 ~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~ 58 (385)
++||+|||+|++|+++|..|+++ |.+|+||||.+.
T Consensus 2 ~~dVlIVGaGpaGl~lA~~L~~~-G~~v~viEr~~~ 36 (493)
T PRK08244 2 KYEVIIIGGGPVGLMLASELALA-GVKTCVIERLKE 36 (493)
T ss_pred CCCEEEECCCHHHHHHHHHHHHC-CCcEEEEecCCC
Confidence 58999999999999999999998 999999999753
No 114
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.60 E-value=1.4e-06 Score=87.71 Aligned_cols=35 Identities=43% Similarity=0.706 Sum_probs=32.9
Q ss_pred CcccEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417 22 DEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD 57 (385)
Q Consensus 22 ~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~ 57 (385)
.+||+||||+|++|+.+|.+|++. |++|+|+|++.
T Consensus 3 ~~yDvvVIGaGpaG~~aA~~aa~~-G~~V~liE~~~ 37 (462)
T PRK06416 3 FEYDVIVIGAGPGGYVAAIRAAQL-GLKVAIVEKEK 37 (462)
T ss_pred ccccEEEECCCHHHHHHHHHHHHC-CCcEEEEeccc
Confidence 469999999999999999999998 99999999865
No 115
>KOG2404|consensus
Probab=98.60 E-value=4.5e-07 Score=83.66 Aligned_cols=49 Identities=27% Similarity=0.556 Sum_probs=41.9
Q ss_pred CCeEEEeCcEEEEEEEcCCCCeEEEEEEEe-CCeEEEEEeCcEEEEcCCCccc
Q psy10417 268 TNLHVIKNSRVVKIIIDPISKQAKGVELVK-NGHKRSVFARKEVIVSSGAFNS 319 (385)
Q Consensus 268 ~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~-~g~~~~i~a~k~VVlAaGa~~t 319 (385)
.-++|.+|++|++|+.+ +++|.||+|.+ .|+...+..+ .||+|+|+|.-
T Consensus 158 e~~ki~~nskvv~il~n--~gkVsgVeymd~sgek~~~~~~-~VVlatGGf~y 207 (477)
T KOG2404|consen 158 ELVKILLNSKVVDILRN--NGKVSGVEYMDASGEKSKIIGD-AVVLATGGFGY 207 (477)
T ss_pred HHHhhhhcceeeeeecC--CCeEEEEEEEcCCCCccceecC-ceEEecCCcCc
Confidence 45899999999999965 79999999997 3666677785 79999999986
No 116
>PLN02985 squalene monooxygenase
Probab=98.59 E-value=1.3e-06 Score=88.78 Aligned_cols=39 Identities=41% Similarity=0.508 Sum_probs=35.2
Q ss_pred CCCCCcccEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417 18 KRLLDEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD 57 (385)
Q Consensus 18 ~~~~~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~ 57 (385)
.+....+||||||+|++|+++|..|+++ |.+|+|+||..
T Consensus 38 ~~~~~~~DViIVGAG~aGlalA~aLa~~-G~~V~vlEr~~ 76 (514)
T PLN02985 38 ERKDGATDVIIVGAGVGGSALAYALAKD-GRRVHVIERDL 76 (514)
T ss_pred cCcCCCceEEEECCCHHHHHHHHHHHHc-CCeEEEEECcC
Confidence 3556789999999999999999999998 99999999863
No 117
>KOG2853|consensus
Probab=98.58 E-value=3.7e-06 Score=78.29 Aligned_cols=45 Identities=27% Similarity=0.386 Sum_probs=36.7
Q ss_pred cCCCCCCCcccEEEECCCchHHHHHhHhhc---CCCceEEEEecCCCC
Q psy10417 15 YGNKRLLDEYDFIIVGAGVGGCVVAHRLSE---VPSWKVLLIEAGDED 59 (385)
Q Consensus 15 ~~~~~~~~~~DviIVGsG~aG~~~A~~La~---~~G~~VlvLE~G~~~ 59 (385)
..+...+..+||+|||+|..|+++|+-|-+ +.|.+|+|+|+.+-.
T Consensus 78 ~~~~~f~~~~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErddty 125 (509)
T KOG2853|consen 78 LDNEVFPYHCDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERDDTY 125 (509)
T ss_pred ccccccccccCEEEECCCccchhhHHHHHHHhhcCCceEEEEeccCcc
Confidence 334466778999999999999999998865 357999999997643
No 118
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=98.58 E-value=2.5e-07 Score=82.20 Aligned_cols=62 Identities=26% Similarity=0.447 Sum_probs=37.5
Q ss_pred HhhhhhccCCCeEEEeCcEEEEEEEcCCCCeEEEEEEEeCCeEEEEEeCcEEEEcCCCcccHHHHHHcC
Q psy10417 259 AYLKPIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVKNGHKRSVFARKEVIVSSGAFNSPKLLMLSG 327 (385)
Q Consensus 259 ~~l~~~~~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~~g~~~~i~a~k~VVlAaGa~~tp~LL~~Sg 327 (385)
.|+...+++.+++++++++|+++..++ ++ --|++.+ + +++.| +.||+|+|.+..|+.+..-|
T Consensus 86 ~yl~~~~~~~~l~i~~~~~V~~v~~~~--~~-w~v~~~~-~--~~~~a-~~VVlAtG~~~~p~~p~~~g 147 (203)
T PF13738_consen 86 DYLQEYAERFGLEIRFNTRVESVRRDG--DG-WTVTTRD-G--RTIRA-DRVVLATGHYSHPRIPDIPG 147 (203)
T ss_dssp HHHHHHHHHTTGGEETS--EEEEEEET--TT-EEEEETT-S---EEEE-EEEEE---SSCSB---S-TT
T ss_pred HHHHHHHhhcCcccccCCEEEEEEEec--cE-EEEEEEe-c--ceeee-eeEEEeeeccCCCCcccccc
Confidence 466666677788899999999999984 33 2244433 3 47789 48999999999998875444
No 119
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=98.56 E-value=3e-06 Score=83.03 Aligned_cols=59 Identities=14% Similarity=0.210 Sum_probs=47.2
Q ss_pred hccCCCeEEEeCcEEEEEEEcCCCCeEEEEEEEeCCeEEEEEeCcEEEEcCCCcccHHHHHHc
Q psy10417 264 IIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVKNGHKRSVFARKEVIVSSGAFNSPKLLMLS 326 (385)
Q Consensus 264 ~~~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~~g~~~~i~a~k~VVlAaGa~~tp~LL~~S 326 (385)
.+++.|++++.++.|+++..+ ++++++|.+..+ ...+++|+ .||||+|++.|..|+...
T Consensus 272 ~~~~~Gg~il~g~~V~~i~~~--~~~v~~V~t~~g-~~~~l~AD-~vVLAaGaw~S~gL~a~l 330 (419)
T TIGR03378 272 RFEQLGGVMLPGDRVLRAEFE--GNRVTRIHTRNH-RDIPLRAD-HFVLASGSFFSNGLVAEF 330 (419)
T ss_pred HHHHCCCEEEECcEEEEEEee--CCeEEEEEecCC-ccceEECC-EEEEccCCCcCHHHHhhc
Confidence 445779999999999999988 678888776543 24479996 799999998788886654
No 120
>PRK06184 hypothetical protein; Provisional
Probab=98.54 E-value=1.9e-06 Score=87.61 Aligned_cols=36 Identities=36% Similarity=0.437 Sum_probs=33.3
Q ss_pred CcccEEEECCCchHHHHHhHhhcCCCceEEEEecCCC
Q psy10417 22 DEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDE 58 (385)
Q Consensus 22 ~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~ 58 (385)
+++||+|||+|++|+++|..|+++ |.+|+||||.+.
T Consensus 2 ~~~dVlIVGaGpaGl~~A~~La~~-Gi~v~viE~~~~ 37 (502)
T PRK06184 2 TTTDVLIVGAGPTGLTLAIELARR-GVSFRLIEKAPE 37 (502)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHC-CCcEEEEeCCCC
Confidence 468999999999999999999998 999999999653
No 121
>KOG2665|consensus
Probab=98.52 E-value=1.3e-06 Score=80.57 Aligned_cols=40 Identities=35% Similarity=0.532 Sum_probs=35.2
Q ss_pred CCCcccEEEECCCchHHHHHhHhhcC-CCceEEEEecCCCC
Q psy10417 20 LLDEYDFIIVGAGVGGCVVAHRLSEV-PSWKVLLIEAGDED 59 (385)
Q Consensus 20 ~~~~~DviIVGsG~aG~~~A~~La~~-~G~~VlvLE~G~~~ 59 (385)
..+.||.||||+|+.|++.|++|.-+ |+.+|+|||+-...
T Consensus 45 s~~~~D~VvvGgGiVGlAsARel~lrhp~l~V~vleke~~l 85 (453)
T KOG2665|consen 45 SKERYDLVVVGGGIVGLASARELSLRHPSLKVAVLEKEKSL 85 (453)
T ss_pred ccccccEEEECCceeehhhhHHHhhcCCCceEEeeehhhhh
Confidence 35689999999999999999999875 89999999997543
No 122
>PRK06847 hypothetical protein; Provisional
Probab=98.52 E-value=8.9e-07 Score=86.44 Aligned_cols=36 Identities=31% Similarity=0.406 Sum_probs=32.9
Q ss_pred CCcccEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417 21 LDEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD 57 (385)
Q Consensus 21 ~~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~ 57 (385)
.+..||+|||+|++|+++|..|++. |.+|+|+|+..
T Consensus 2 ~~~~~V~IVGaG~aGl~~A~~L~~~-g~~v~v~E~~~ 37 (375)
T PRK06847 2 AAVKKVLIVGGGIGGLSAAIALRRA-GIAVDLVEIDP 37 (375)
T ss_pred CCcceEEEECCCHHHHHHHHHHHhC-CCCEEEEecCC
Confidence 3467999999999999999999998 99999999864
No 123
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=98.50 E-value=2.1e-06 Score=84.00 Aligned_cols=33 Identities=39% Similarity=0.572 Sum_probs=31.4
Q ss_pred cEEEECCCchHHHHHhHhhcCCCceEEEEecCCC
Q psy10417 25 DFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDE 58 (385)
Q Consensus 25 DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~ 58 (385)
||+|||+|++|+++|..|+++ |.+|+|+||...
T Consensus 1 dViIvGaG~aGl~~A~~L~~~-G~~v~v~Er~~~ 33 (385)
T TIGR01988 1 DIVIVGGGMVGLALALALARS-GLKIALIEATPA 33 (385)
T ss_pred CEEEECCCHHHHHHHHHHhcC-CCEEEEEeCCCc
Confidence 899999999999999999998 999999999864
No 124
>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit. Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=98.49 E-value=2.5e-06 Score=87.15 Aligned_cols=61 Identities=16% Similarity=0.309 Sum_probs=50.2
Q ss_pred hccCCCeEEEeCcEEEEEEEcCCCCeEEEEEEEe--CCeEEEEEeCcEEEEcCCCcccHHHHHHcCC
Q psy10417 264 IIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVK--NGHKRSVFARKEVIVSSGAFNSPKLLMLSGV 328 (385)
Q Consensus 264 ~~~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~--~g~~~~i~a~k~VVlAaGa~~tp~LL~~Sgi 328 (385)
.+.+.|++|+++++|++|..+ ++++.+|++.+ +|+...++|+ .||+|||+ ++..|+...|+
T Consensus 137 ~A~~~Ga~i~~~t~V~~i~~~--~~~v~gv~v~~~~~g~~~~i~a~-~VVnAaG~-wa~~l~~~~g~ 199 (516)
T TIGR03377 137 DAQEHGARIFTYTKVTGLIRE--GGRVTGVKVEDHKTGEEERIEAQ-VVINAAGI-WAGRIAEYAGL 199 (516)
T ss_pred HHHHcCCEEEcCcEEEEEEEE--CCEEEEEEEEEcCCCcEEEEEcC-EEEECCCc-chHHHHHhcCC
Confidence 445679999999999999987 68899999875 4556689994 89999996 67888877775
No 125
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=98.48 E-value=2.7e-06 Score=87.34 Aligned_cols=37 Identities=32% Similarity=0.450 Sum_probs=34.0
Q ss_pred CCcccEEEECCCchHHHHHhHhhcCCCceEEEEecCCC
Q psy10417 21 LDEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDE 58 (385)
Q Consensus 21 ~~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~ 58 (385)
...+||+|||+|++|+++|..|+++ |.+|+||||...
T Consensus 8 ~~~~dV~IVGaGp~Gl~lA~~L~~~-G~~v~v~Er~~~ 44 (538)
T PRK06183 8 AHDTDVVIVGAGPVGLTLANLLGQY-GVRVLVLERWPT 44 (538)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHC-CCcEEEEecCCC
Confidence 5679999999999999999999998 999999999753
No 126
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=98.48 E-value=7.2e-06 Score=81.07 Aligned_cols=101 Identities=18% Similarity=0.248 Sum_probs=62.7
Q ss_pred hhhhccCCCeEEEeCcEEEEEEEcCCCCeEEEEEEEeCCeEEEEEeCcEEEEcCCCcccHHHHHHc-CCCChhhhhhcCC
Q psy10417 261 LKPIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVKNGHKRSVFARKEVIVSSGAFNSPKLLMLS-GVGPREHLTELGI 339 (385)
Q Consensus 261 l~~~~~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~~g~~~~i~a~k~VVlAaGa~~tp~LL~~S-gig~~~~l~~~gi 339 (385)
+....++.|++|++++.|+++..+ +++++.|. ..+++...++++ .||||+|.+.+..|.... +|- -.-+|+
T Consensus 265 L~~~l~~~Gv~I~~g~~V~~v~~~--~~~V~~v~-~~~g~~~~i~AD-~VVLAtGrf~s~GL~a~~~~i~----Epif~l 336 (422)
T PRK05329 265 LRRAFERLGGRIMPGDEVLGAEFE--GGRVTAVW-TRNHGDIPLRAR-HFVLATGSFFSGGLVAERDGIR----EPIFGL 336 (422)
T ss_pred HHHHHHhCCCEEEeCCEEEEEEEe--CCEEEEEE-eeCCceEEEECC-EEEEeCCCcccCceeccCCccc----cccCCC
Confidence 444556789999999999999987 56777766 344556689995 899999998777663222 121 112344
Q ss_pred Ccccc-----ccchhhhhhccCCCceEEEEcCCccc
Q psy10417 340 PVVQD-----LRVGDNLMEHVAYSALTFGINKTFSV 370 (385)
Q Consensus 340 ~~~~~-----~pvG~~l~dh~~~~~~~~~~~~~~~~ 370 (385)
++... +--.+.|..||++ ..-+.+++.+..
T Consensus 337 ~v~~~~~r~~w~~~~~~~~~p~~-~~GV~~d~~~~p 371 (422)
T PRK05329 337 DVLQPADRADWYQRDFFAPHPFL-QFGVATDATLRP 371 (422)
T ss_pred CCCCCCchhhhhhhhhccCCchh-hcCceECCCcCc
Confidence 43211 1123445667775 444555555443
No 127
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=98.48 E-value=1.7e-06 Score=85.27 Aligned_cols=35 Identities=29% Similarity=0.508 Sum_probs=31.7
Q ss_pred cccEEEECCCchHHHHHhHhhcC-CCceEEEEecCC
Q psy10417 23 EYDFIIVGAGVGGCVVAHRLSEV-PSWKVLLIEAGD 57 (385)
Q Consensus 23 ~~DviIVGsG~aG~~~A~~La~~-~G~~VlvLE~G~ 57 (385)
.|||+|||+|++|+++|..|+++ +|.+|+|+|+.+
T Consensus 1 ~~dv~IvGaG~aGl~~A~~L~~~g~g~~v~liE~~~ 36 (403)
T PRK07333 1 QCDVVIAGGGYVGLALAVALKQAAPHLPVTVVDAAP 36 (403)
T ss_pred CCCEEEECccHHHHHHHHHHhcCCCCCEEEEEeCCC
Confidence 38999999999999999999998 149999999975
No 128
>PRK06126 hypothetical protein; Provisional
Probab=98.46 E-value=6.6e-06 Score=84.57 Aligned_cols=36 Identities=31% Similarity=0.398 Sum_probs=33.3
Q ss_pred CCcccEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417 21 LDEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD 57 (385)
Q Consensus 21 ~~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~ 57 (385)
..++||+|||+|++|+++|..|+++ |.+|+|+||.+
T Consensus 5 ~~~~~VlIVGaGpaGL~~Al~La~~-G~~v~viEr~~ 40 (545)
T PRK06126 5 TSETPVLIVGGGPVGLALALDLGRR-GVDSILVERKD 40 (545)
T ss_pred CccCCEEEECCCHHHHHHHHHHHHC-CCcEEEEeCCC
Confidence 4578999999999999999999998 99999999864
No 129
>PRK07045 putative monooxygenase; Reviewed
Probab=98.45 E-value=2.6e-06 Score=83.73 Aligned_cols=37 Identities=27% Similarity=0.472 Sum_probs=33.9
Q ss_pred CCcccEEEECCCchHHHHHhHhhcCCCceEEEEecCCC
Q psy10417 21 LDEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDE 58 (385)
Q Consensus 21 ~~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~ 58 (385)
..++||+|||+|++|+++|..|+++ |++|+|+|+.+.
T Consensus 3 ~~~~~V~IiGgGpaGl~~A~~L~~~-G~~v~v~E~~~~ 39 (388)
T PRK07045 3 NNPVDVLINGSGIAGVALAHLLGAR-GHSVTVVERAAR 39 (388)
T ss_pred CceeEEEEECCcHHHHHHHHHHHhc-CCcEEEEeCCCc
Confidence 3568999999999999999999998 999999999763
No 130
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=98.44 E-value=2.4e-06 Score=83.93 Aligned_cols=33 Identities=36% Similarity=0.494 Sum_probs=31.7
Q ss_pred cccEEEECCCchHHHHHhHhhcCCCceEEEEecC
Q psy10417 23 EYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAG 56 (385)
Q Consensus 23 ~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G 56 (385)
.+||+|||+|++|+++|..|+++ |++|+|||+.
T Consensus 2 ~~dV~IvGaG~aGl~lA~~L~~~-G~~V~l~E~~ 34 (387)
T COG0654 2 MLDVAIVGAGPAGLALALALARA-GLDVTLLERA 34 (387)
T ss_pred CCCEEEECCCHHHHHHHHHHHhC-CCcEEEEccC
Confidence 57999999999999999999999 9999999996
No 131
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=98.42 E-value=3.5e-06 Score=82.93 Aligned_cols=34 Identities=21% Similarity=0.358 Sum_probs=32.3
Q ss_pred cccEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417 23 EYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD 57 (385)
Q Consensus 23 ~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~ 57 (385)
.+||+|||+|++|+++|..|+++ |.+|+|+|+.+
T Consensus 2 ~~dV~IvGaGpaGl~~A~~L~~~-G~~v~v~E~~~ 35 (392)
T PRK08243 2 RTQVAIIGAGPAGLLLGQLLHLA-GIDSVVLERRS 35 (392)
T ss_pred cceEEEECCCHHHHHHHHHHHhc-CCCEEEEEcCC
Confidence 57999999999999999999998 99999999975
No 132
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=98.42 E-value=2e-06 Score=87.69 Aligned_cols=33 Identities=30% Similarity=0.569 Sum_probs=31.2
Q ss_pred ccEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417 24 YDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD 57 (385)
Q Consensus 24 ~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~ 57 (385)
|||||||+|.+|+.+|..+|+. |.+|+|+|+..
T Consensus 1 yDViVIGaG~AGl~aA~ala~~-G~~v~Lie~~~ 33 (617)
T TIGR00136 1 FDVIVIGGGHAGCEAALAAARM-GAKTLLLTLNL 33 (617)
T ss_pred CeEEEECccHHHHHHHHHHHHC-CCCEEEEeccc
Confidence 7999999999999999999998 99999999863
No 133
>PLN02697 lycopene epsilon cyclase
Probab=98.41 E-value=2.3e-06 Score=86.90 Aligned_cols=35 Identities=23% Similarity=0.406 Sum_probs=32.2
Q ss_pred CCcccEEEECCCchHHHHHhHhhcCCCceEEEEecC
Q psy10417 21 LDEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAG 56 (385)
Q Consensus 21 ~~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G 56 (385)
...|||+|||+|++|+++|..|+++ |++|+|||++
T Consensus 106 ~~~~DVvIVGaGPAGLalA~~Lak~-Gl~V~LIe~~ 140 (529)
T PLN02697 106 DGTLDLVVIGCGPAGLALAAESAKL-GLNVGLIGPD 140 (529)
T ss_pred cCcccEEEECcCHHHHHHHHHHHhC-CCcEEEecCc
Confidence 3469999999999999999999998 9999999975
No 134
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.40 E-value=7.2e-06 Score=80.21 Aligned_cols=33 Identities=21% Similarity=0.427 Sum_probs=31.4
Q ss_pred ccEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417 24 YDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD 57 (385)
Q Consensus 24 ~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~ 57 (385)
+||+|||+|++|+++|..|+++ |++|+|+|+.+
T Consensus 2 ~dV~IvGgG~~Gl~~A~~L~~~-G~~v~l~E~~~ 34 (374)
T PRK06617 2 SNTVILGCGLSGMLTALSFAQK-GIKTTIFESKS 34 (374)
T ss_pred ccEEEECCCHHHHHHHHHHHcC-CCeEEEecCCC
Confidence 7999999999999999999998 99999999864
No 135
>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.39 E-value=3e-06 Score=87.39 Aligned_cols=57 Identities=12% Similarity=0.154 Sum_probs=46.8
Q ss_pred hhhhccCCCeEEEeCcEEEEEEEcCCCCeEEEEEEEe--CCeEEEEEeCcEEEEcCCCccc
Q psy10417 261 LKPIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVK--NGHKRSVFARKEVIVSSGAFNS 319 (385)
Q Consensus 261 l~~~~~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~--~g~~~~i~a~k~VVlAaGa~~t 319 (385)
|...+.+.|++|+.++.+++|+.++ +++|+||...+ +|+.+.+.| |.||||+|++..
T Consensus 132 L~~~~~~~gi~i~~~~~~~~Li~~~-~g~v~Gv~~~~~~~g~~~~i~A-kaVVLATGG~~~ 190 (570)
T PRK05675 132 LYQGNLKNGTTFLNEWYAVDLVKNQ-DGAVVGVIAICIETGETVYIKS-KATVLATGGAGR 190 (570)
T ss_pred HHHHHhccCCEEEECcEEEEEEEcC-CCeEEEEEEEEcCCCcEEEEec-CeEEECCCCccc
Confidence 3334456799999999999999864 58999999864 577778999 599999999885
No 136
>PRK11445 putative oxidoreductase; Provisional
Probab=98.39 E-value=9.3e-06 Score=78.76 Aligned_cols=32 Identities=34% Similarity=0.567 Sum_probs=29.9
Q ss_pred ccEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417 24 YDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD 57 (385)
Q Consensus 24 ~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~ 57 (385)
|||+|||+|++|+++|..|+++ .+|+|||+.+
T Consensus 2 ~dV~IvGaGpaGl~~A~~La~~--~~V~liE~~~ 33 (351)
T PRK11445 2 YDVAIIGLGPAGSALARLLAGK--MKVIAIDKKH 33 (351)
T ss_pred ceEEEECCCHHHHHHHHHHhcc--CCEEEEECCC
Confidence 8999999999999999999985 8999999875
No 137
>PRK08163 salicylate hydroxylase; Provisional
Probab=98.38 E-value=9.7e-06 Score=79.77 Aligned_cols=35 Identities=34% Similarity=0.500 Sum_probs=32.7
Q ss_pred CcccEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417 22 DEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD 57 (385)
Q Consensus 22 ~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~ 57 (385)
...||+|||+|++|+++|..|+++ |.+|+|+||.+
T Consensus 3 ~~~~V~IvGaGiaGl~~A~~L~~~-g~~v~v~Er~~ 37 (396)
T PRK08163 3 KVTPVLIVGGGIGGLAAALALARQ-GIKVKLLEQAA 37 (396)
T ss_pred CCCeEEEECCcHHHHHHHHHHHhC-CCcEEEEeeCc
Confidence 467999999999999999999998 99999999975
No 138
>PRK07190 hypothetical protein; Provisional
Probab=98.37 E-value=5.1e-06 Score=84.09 Aligned_cols=35 Identities=23% Similarity=0.343 Sum_probs=32.7
Q ss_pred CcccEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417 22 DEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD 57 (385)
Q Consensus 22 ~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~ 57 (385)
..+||+|||+|++|+++|..|+++ |.+|+||||.+
T Consensus 4 ~~~dVlIVGAGPaGL~lA~~Lar~-Gi~V~llEr~~ 38 (487)
T PRK07190 4 QVTDVVIIGAGPVGLMCAYLGQLC-GLNTVIVDKSD 38 (487)
T ss_pred ccceEEEECCCHHHHHHHHHHHHc-CCCEEEEeCCC
Confidence 358999999999999999999998 99999999975
No 139
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=98.37 E-value=1.7e-06 Score=87.31 Aligned_cols=60 Identities=15% Similarity=0.153 Sum_probs=44.0
Q ss_pred hccCCCeEEEeCcEEEEEEEcCC--CC-eEEEEEEEeCCeEEEEEeCcEEEEcCCCcccHHHHH
Q psy10417 264 IIDRTNLHVIKNSRVVKIIIDPI--SK-QAKGVELVKNGHKRSVFARKEVIVSSGAFNSPKLLM 324 (385)
Q Consensus 264 ~~~~~g~~i~~~~~V~~i~~~~~--~~-~v~GV~~~~~g~~~~i~a~k~VVlAaGa~~tp~LL~ 324 (385)
.+++.|.+|+++++|++|+.+.. +. ++++|.+.+++....+.++ .||+|+.+....+||-
T Consensus 228 ~L~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~~v~~~~g~~~~~~~aD-~VVlA~p~~~~~~Ll~ 290 (474)
T TIGR02732 228 YIEARGGKFHLRHKVREIKYEKSSDGSTRVTGLIMSKPEGKKVIKAD-AYVAACDVPGIKRLLP 290 (474)
T ss_pred HHHHCCCEEECCCEEEEEEEecCCCCceeEEEEEEecCCcceEEECC-EEEECCChHHHHhhCC
Confidence 44558999999999999998631 22 4888888643222358886 7999999887777763
No 140
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=98.36 E-value=8.2e-07 Score=90.38 Aligned_cols=35 Identities=29% Similarity=0.385 Sum_probs=29.2
Q ss_pred cEEEECCCchHHHHHhHhhcCCCceEEEEecCCCCC
Q psy10417 25 DFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDEDR 60 (385)
Q Consensus 25 DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~~ 60 (385)
.|+|||+|++|+++|..|.+. |.+|+++||.+..+
T Consensus 3 rVaVIGaG~sGL~a~k~l~e~-g~~~~~fE~~~~iG 37 (531)
T PF00743_consen 3 RVAVIGAGPSGLAAAKNLLEE-GLEVTCFEKSDDIG 37 (531)
T ss_dssp EEEEE--SHHHHHHHHHHHHT-T-EEEEEESSSSSS
T ss_pred EEEEECccHHHHHHHHHHHHC-CCCCeEEecCCCCC
Confidence 489999999999999999998 99999999987654
No 141
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=98.33 E-value=5.1e-07 Score=65.62 Aligned_cols=32 Identities=31% Similarity=0.543 Sum_probs=29.0
Q ss_pred EECCCchHHHHHhHhhcCCCceEEEEecCCCCC
Q psy10417 28 IVGAGVGGCVVAHRLSEVPSWKVLLIEAGDEDR 60 (385)
Q Consensus 28 IVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~~ 60 (385)
|||+|++|+++|+.|+++ |.+|+|+|+.+...
T Consensus 1 IiGaG~sGl~aA~~L~~~-g~~v~v~E~~~~~G 32 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKA-GYRVTVFEKNDRLG 32 (68)
T ss_dssp EES-SHHHHHHHHHHHHT-TSEEEEEESSSSSS
T ss_pred CEeeCHHHHHHHHHHHHC-CCcEEEEecCcccC
Confidence 899999999999999998 99999999988764
No 142
>PRK07538 hypothetical protein; Provisional
Probab=98.31 E-value=9.2e-06 Score=80.55 Aligned_cols=33 Identities=30% Similarity=0.556 Sum_probs=31.0
Q ss_pred ccEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417 24 YDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD 57 (385)
Q Consensus 24 ~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~ 57 (385)
.||+|||+|++|+++|..|+++ |++|+|+|+.+
T Consensus 1 ~dV~IVGaG~aGl~~A~~L~~~-G~~v~v~E~~~ 33 (413)
T PRK07538 1 MKVLIAGGGIGGLTLALTLHQR-GIEVVVFEAAP 33 (413)
T ss_pred CeEEEECCCHHHHHHHHHHHhC-CCcEEEEEcCC
Confidence 3899999999999999999998 99999999965
No 143
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=98.30 E-value=1.3e-05 Score=82.34 Aligned_cols=39 Identities=26% Similarity=0.335 Sum_probs=35.1
Q ss_pred CCCCCcccEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417 18 KRLLDEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD 57 (385)
Q Consensus 18 ~~~~~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~ 57 (385)
......+||+|||+|++|+++|..|++. |.+|+|+||.+
T Consensus 18 ~~~~~~~dVlIVGaGpaGl~lA~~L~~~-G~~v~viE~~~ 56 (547)
T PRK08132 18 ADDPARHPVVVVGAGPVGLALAIDLAQQ-GVPVVLLDDDD 56 (547)
T ss_pred CCCCCcCCEEEECCCHHHHHHHHHHHhC-CCcEEEEeCCC
Confidence 3445779999999999999999999998 99999999975
No 144
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=98.29 E-value=2e-06 Score=84.85 Aligned_cols=51 Identities=25% Similarity=0.518 Sum_probs=39.7
Q ss_pred cCCCeEEEeCcEEEEEEEcCCCCeEEEEEEEeCCeEEEEEeCcEEEEcCCCcccHHH
Q psy10417 266 DRTNLHVIKNSRVVKIIIDPISKQAKGVELVKNGHKRSVFARKEVIVSSGAFNSPKL 322 (385)
Q Consensus 266 ~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~~g~~~~i~a~k~VVlAaGa~~tp~L 322 (385)
..+|++|+.+ .|++|+.++ +.+|.||.+.++- .+.| +.|||++|.|-.-++
T Consensus 112 ~~~NL~l~q~-~v~dli~e~-~~~v~GV~t~~G~---~~~a-~aVVlTTGTFL~G~I 162 (621)
T COG0445 112 NQPNLHLLQG-EVEDLIVEE-GQRVVGVVTADGP---EFHA-KAVVLTTGTFLRGKI 162 (621)
T ss_pred cCCCceehHh-hhHHHhhcC-CCeEEEEEeCCCC---eeec-CEEEEeecccccceE
Confidence 4689999876 688888863 3479999998753 6888 589999999876554
No 145
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=98.28 E-value=7.4e-06 Score=79.32 Aligned_cols=54 Identities=20% Similarity=0.255 Sum_probs=42.6
Q ss_pred hhccCCCeEEEeCcEEEEEEEcCCCCeEEEEEEEeCCeEEEEEeCcEEEEcCCCcccHHH
Q psy10417 263 PIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVKNGHKRSVFARKEVIVSSGAFNSPKL 322 (385)
Q Consensus 263 ~~~~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~~g~~~~i~a~k~VVlAaGa~~tp~L 322 (385)
..++..|++++.+|+|++|+++ ++.+.+|...++. ++.++ .||||-|--....+
T Consensus 181 ~~l~~~G~ei~f~t~VeDi~~~--~~~~~~v~~~~g~---~i~~~-~vvlA~Grsg~dw~ 234 (486)
T COG2509 181 EYLESLGGEIRFNTEVEDIEIE--DNEVLGVKLTKGE---EIEAD-YVVLAPGRSGRDWF 234 (486)
T ss_pred HHHHhcCcEEEeeeEEEEEEec--CCceEEEEccCCc---EEecC-EEEEccCcchHHHH
Confidence 3456779999999999999998 5668888887754 78995 89999996544443
No 146
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=98.26 E-value=4.7e-06 Score=83.22 Aligned_cols=40 Identities=25% Similarity=0.369 Sum_probs=35.6
Q ss_pred CCCCcccEEEECCCchHHHHHhHhhcCCCce-EEEEecCCCC
Q psy10417 19 RLLDEYDFIIVGAGVGGCVVAHRLSEVPSWK-VLLIEAGDED 59 (385)
Q Consensus 19 ~~~~~~DviIVGsG~aG~~~A~~La~~~G~~-VlvLE~G~~~ 59 (385)
...+.+||+|||+|.+|+++|++|.++ |.. ++||||....
T Consensus 4 ~~~~~~~v~IIGaG~sGlaaa~~L~~~-g~~~~~i~Ek~~~~ 44 (443)
T COG2072 4 GVATHTDVAIIGAGQSGLAAAYALKQA-GVPDFVIFEKRDDV 44 (443)
T ss_pred CcCCcccEEEECCCHHHHHHHHHHHHc-CCCcEEEEEccCCc
Confidence 346789999999999999999999998 888 9999998644
No 147
>TIGR02352 thiamin_ThiO glycine oxidase ThiO. This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.
Probab=98.23 E-value=1.6e-05 Score=76.23 Aligned_cols=53 Identities=23% Similarity=0.412 Sum_probs=41.3
Q ss_pred hhccCCCeEEEeCcEEEEEEEcCCCCeEEEEEEEeCCeEEEEEeCcEEEEcCCCcccHHHH
Q psy10417 263 PIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVKNGHKRSVFARKEVIVSSGAFNSPKLL 323 (385)
Q Consensus 263 ~~~~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~~g~~~~i~a~k~VVlAaGa~~tp~LL 323 (385)
..+.+.|++++.+++|+.|..+ ++++++|.+.+ | +++|+ .||+|+|+ +++.|+
T Consensus 145 ~~~~~~g~~~~~~~~v~~i~~~--~~~~~~v~~~~-g---~~~a~-~vV~a~G~-~~~~l~ 197 (337)
T TIGR02352 145 KALEKLGVEIIEHTEVQHIEIR--GEKVTAIVTPS-G---DVQAD-QVVLAAGA-WAGELL 197 (337)
T ss_pred HHHHHcCCEEEccceEEEEEee--CCEEEEEEcCC-C---EEECC-EEEEcCCh-hhhhcc
Confidence 3455679999999999999976 67788887543 3 68895 79999996 666654
No 148
>KOG1399|consensus
Probab=98.21 E-value=6e-06 Score=81.86 Aligned_cols=39 Identities=26% Similarity=0.384 Sum_probs=34.7
Q ss_pred CCcccEEEECCCchHHHHHhHhhcCCCceEEEEecCCCCC
Q psy10417 21 LDEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDEDR 60 (385)
Q Consensus 21 ~~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~~ 60 (385)
...-+|+|||+|++||++|+.|.++ |..|+|+||.+...
T Consensus 4 ~~~~~vaIIGAG~sGL~~ar~l~~~-g~~v~vfEr~~~iG 42 (448)
T KOG1399|consen 4 MMSKDVAVIGAGPAGLAAARELLRE-GHEVVVFERTDDIG 42 (448)
T ss_pred CCCCceEEECcchHHHHHHHHHHHC-CCCceEEEecCCcc
Confidence 3456999999999999999999998 99999999987653
No 149
>PLN02487 zeta-carotene desaturase
Probab=98.21 E-value=2.1e-05 Score=80.61 Aligned_cols=59 Identities=17% Similarity=0.125 Sum_probs=43.8
Q ss_pred hccCCCeEEEeCcEEEEEEEcCC-CC--eEEEEEEEeCCeEEEEEeCcEEEEcCCCcccHHHH
Q psy10417 264 IIDRTNLHVIKNSRVVKIIIDPI-SK--QAKGVELVKNGHKRSVFARKEVIVSSGAFNSPKLL 323 (385)
Q Consensus 264 ~~~~~g~~i~~~~~V~~i~~~~~-~~--~v~GV~~~~~g~~~~i~a~k~VVlAaGa~~tp~LL 323 (385)
.+++.|.+|++++.|++|+.+.+ ++ +++||.+.+++....+.++ .||+|++.....+||
T Consensus 304 ~L~~~Gg~V~l~~~V~~I~~~~~~~g~~~v~gv~~~~~~~~~~~~aD-~VV~A~p~~~~~~Ll 365 (569)
T PLN02487 304 YITDRGGRFHLRWGCREILYDKSPDGETYVTGLKVSKATEKEIVKAD-AYVAACDVPGIKRLL 365 (569)
T ss_pred HHHHcCCEEEeCCceEEEEEecCCCCceeEEEEEEecCCCceEEECC-EEEECCCHHHHHHhC
Confidence 44678999999999999999742 22 5899998533333457885 799999976655554
No 150
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=98.21 E-value=1.2e-06 Score=87.63 Aligned_cols=36 Identities=22% Similarity=0.322 Sum_probs=33.4
Q ss_pred CCcccEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417 21 LDEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD 57 (385)
Q Consensus 21 ~~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~ 57 (385)
...|||+|||+|++|+++|..||++ |++|+|||+..
T Consensus 37 ~~~~DViIVGaGPAG~~aA~~LA~~-G~~VlllEr~~ 72 (450)
T PLN00093 37 GRKLRVAVIGGGPAGACAAETLAKG-GIETFLIERKL 72 (450)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHhC-CCcEEEEecCC
Confidence 5579999999999999999999998 99999999863
No 151
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=98.19 E-value=1.3e-06 Score=84.02 Aligned_cols=36 Identities=39% Similarity=0.549 Sum_probs=31.3
Q ss_pred cccEEEECCCchHHHHHhHhhcCCCceEEEEecCCCC
Q psy10417 23 EYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDED 59 (385)
Q Consensus 23 ~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~ 59 (385)
+|||+|||+|++|+++|..|+++ |.+|+|+||.+..
T Consensus 1 ~~dV~IvGaG~aGl~~A~~L~~~-G~~v~i~E~~~~~ 36 (356)
T PF01494_consen 1 EYDVAIVGAGPAGLAAALALARA-GIDVTIIERRPDP 36 (356)
T ss_dssp EEEEEEE--SHHHHHHHHHHHHT-TCEEEEEESSSSC
T ss_pred CceEEEECCCHHHHHHHHHHHhc-ccccccchhcccc
Confidence 58999999999999999999999 9999999997643
No 152
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=98.18 E-value=1.5e-06 Score=81.44 Aligned_cols=34 Identities=41% Similarity=0.677 Sum_probs=32.2
Q ss_pred ccEEEECCCchHHHHHhHhhcCCCceEEEEecCCC
Q psy10417 24 YDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDE 58 (385)
Q Consensus 24 ~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~ 58 (385)
|||+|||+|++|+++|..|++. |.+|+|+|+...
T Consensus 1 ~dv~IiGaG~aGl~~A~~l~~~-g~~v~vie~~~~ 34 (295)
T TIGR02032 1 YDVVVVGAGPAGASAAYRLADK-GLRVLLLEKKSF 34 (295)
T ss_pred CCEEEECCCHHHHHHHHHHHHC-CCeEEEEeccCC
Confidence 7999999999999999999998 999999999864
No 153
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=98.16 E-value=1.4e-06 Score=85.76 Aligned_cols=32 Identities=28% Similarity=0.611 Sum_probs=31.0
Q ss_pred ccEEEECCCchHHHHHhHhhcCCCceEEEEecC
Q psy10417 24 YDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAG 56 (385)
Q Consensus 24 ~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G 56 (385)
|||||||+|++|+++|+.||++ |.+|+|||+.
T Consensus 1 yDVvIVGaGpAG~~aA~~La~~-G~~V~l~E~~ 32 (388)
T TIGR02023 1 YDVAVIGGGPSGATAAETLARA-GIETILLERA 32 (388)
T ss_pred CeEEEECCCHHHHHHHHHHHhC-CCcEEEEECC
Confidence 7999999999999999999998 9999999986
No 154
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=98.11 E-value=2.2e-06 Score=85.99 Aligned_cols=35 Identities=40% Similarity=0.735 Sum_probs=32.6
Q ss_pred CcccEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417 22 DEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD 57 (385)
Q Consensus 22 ~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~ 57 (385)
++||++|||+|++|+.+|.+|++. |++|+|+|++.
T Consensus 1 ~~yDvvVIG~GpaG~~aA~~aa~~-G~~V~liE~~~ 35 (450)
T TIGR01421 1 KHYDYLVIGGGSGGIASARRAAEH-GAKALLVEAKK 35 (450)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHC-CCcEEEecccc
Confidence 469999999999999999999998 99999999853
No 155
>PRK09126 hypothetical protein; Provisional
Probab=98.10 E-value=2.4e-06 Score=83.94 Aligned_cols=36 Identities=36% Similarity=0.435 Sum_probs=33.6
Q ss_pred CcccEEEECCCchHHHHHhHhhcCCCceEEEEecCCC
Q psy10417 22 DEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDE 58 (385)
Q Consensus 22 ~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~ 58 (385)
.++||+|||+|++|+++|..|+++ |++|+|+||...
T Consensus 2 ~~~dviIvGgG~aGl~~A~~L~~~-G~~v~v~E~~~~ 37 (392)
T PRK09126 2 MHSDIVVVGAGPAGLSFARSLAGS-GLKVTLIERQPL 37 (392)
T ss_pred CcccEEEECcCHHHHHHHHHHHhC-CCcEEEEeCCCc
Confidence 369999999999999999999998 999999999864
No 156
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=98.09 E-value=3e-06 Score=83.32 Aligned_cols=36 Identities=33% Similarity=0.496 Sum_probs=33.8
Q ss_pred CCcccEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417 21 LDEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD 57 (385)
Q Consensus 21 ~~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~ 57 (385)
...+||+|||+|++|+++|..|+++ |.+|+|||+.+
T Consensus 4 ~~~~dV~IvGaG~aGl~~A~~La~~-G~~v~liE~~~ 39 (392)
T PRK08773 4 RSRRDAVIVGGGVVGAACALALADA-GLSVALVEGRE 39 (392)
T ss_pred CCCCCEEEECcCHHHHHHHHHHhcC-CCEEEEEeCCC
Confidence 5678999999999999999999998 99999999975
No 157
>PRK08013 oxidoreductase; Provisional
Probab=98.08 E-value=3e-06 Score=83.64 Aligned_cols=36 Identities=28% Similarity=0.402 Sum_probs=33.4
Q ss_pred CcccEEEECCCchHHHHHhHhhcCCCceEEEEecCCC
Q psy10417 22 DEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDE 58 (385)
Q Consensus 22 ~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~ 58 (385)
+++||+|||+|++|+++|..|+++ |++|+|||+.+.
T Consensus 2 ~~~dV~IvGaGpaGl~~A~~La~~-G~~v~viE~~~~ 37 (400)
T PRK08013 2 QSVDVVIAGGGMVGLAVACGLQGS-GLRVAVLEQRVP 37 (400)
T ss_pred CcCCEEEECcCHHHHHHHHHHhhC-CCEEEEEeCCCC
Confidence 468999999999999999999998 999999999764
No 158
>PRK06116 glutathione reductase; Validated
Probab=98.08 E-value=3.1e-06 Score=84.95 Aligned_cols=36 Identities=42% Similarity=0.652 Sum_probs=33.3
Q ss_pred CCcccEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417 21 LDEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD 57 (385)
Q Consensus 21 ~~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~ 57 (385)
..+|||+|||+|++|+.+|.+|++. |++|+|+|++.
T Consensus 2 ~~~~DvvVIG~GpaG~~aA~~~a~~-G~~V~liE~~~ 37 (450)
T PRK06116 2 TKDYDLIVIGGGSGGIASANRAAMY-GAKVALIEAKR 37 (450)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHC-CCeEEEEeccc
Confidence 4579999999999999999999998 99999999863
No 159
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.07 E-value=3.1e-06 Score=84.70 Aligned_cols=35 Identities=34% Similarity=0.718 Sum_probs=33.1
Q ss_pred CcccEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417 22 DEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD 57 (385)
Q Consensus 22 ~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~ 57 (385)
++|||||||||++|+.+|.+|++. |++|+|+|+++
T Consensus 2 ~~yDvvVIGgGpaGl~aA~~la~~-g~~V~lie~~~ 36 (441)
T PRK08010 2 NKYQAVIIGFGKAGKTLAVTLAKA-GWRVALIEQSN 36 (441)
T ss_pred CcCCEEEECCCHhHHHHHHHHHHC-CCeEEEEcCCC
Confidence 469999999999999999999998 99999999975
No 160
>TIGR01816 sdhA_forward succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup. Succinate dehydrogenase and fumarate reductase are homologous enzymes reversible in principle but favored under different circumstances. This model represents a narrowly defined clade of the succinate dehydrogenase flavoprotein subunit as found in mitochondria, in Rickettsia, in E. coli and other Proteobacteria, and in a few other lineages. However, this model excludes all known fumarate reductases. It also excludes putative succinate dehydrogenases that appear to diverged before the split between E. coli succinate dehydrogenase and fumarate reductase.
Probab=98.07 E-value=4.6e-05 Score=78.61 Aligned_cols=56 Identities=14% Similarity=0.275 Sum_probs=46.7
Q ss_pred hhhhccCCCeEEEeCcEEEEEEEcCCCCeEEEEEEEe--CCeEEEEEeCcEEEEcCCCccc
Q psy10417 261 LKPIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVK--NGHKRSVFARKEVIVSSGAFNS 319 (385)
Q Consensus 261 l~~~~~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~--~g~~~~i~a~k~VVlAaGa~~t 319 (385)
|...+++.|++|++++.|++|+.+ +++|+||...+ +|+...+.| |.||||+|++..
T Consensus 125 L~~~~~~~gi~i~~~~~~~~Li~~--~g~v~Ga~~~~~~~g~~~~i~A-kaVILATGG~~~ 182 (565)
T TIGR01816 125 LYQQNLKADTSFFNEYFALDLLME--DGECRGVIAYCLETGEIHRFRA-KAVVLATGGYGR 182 (565)
T ss_pred HHHHHHhCCCEEEeccEEEEEEee--CCEEEEEEEEEcCCCcEEEEEe-CeEEECCCCccc
Confidence 444455679999999999999987 68999999864 577778999 599999999875
No 161
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=98.07 E-value=3.7e-06 Score=82.51 Aligned_cols=36 Identities=22% Similarity=0.354 Sum_probs=33.3
Q ss_pred CCcccEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417 21 LDEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD 57 (385)
Q Consensus 21 ~~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~ 57 (385)
++.+||||||+|++|+++|..|+++ |.+|+|+|+.+
T Consensus 5 ~~~~dViIVGaG~~Gl~~A~~L~~~-G~~v~liE~~~ 40 (388)
T PRK07494 5 KEHTDIAVIGGGPAGLAAAIALARA-GASVALVAPEP 40 (388)
T ss_pred CCCCCEEEECcCHHHHHHHHHHhcC-CCeEEEEeCCC
Confidence 4468999999999999999999998 99999999965
No 162
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=98.06 E-value=3.4e-06 Score=82.92 Aligned_cols=36 Identities=28% Similarity=0.436 Sum_probs=33.3
Q ss_pred CCcccEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417 21 LDEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD 57 (385)
Q Consensus 21 ~~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~ 57 (385)
.++|||+|||+|++|+++|..|+++ |++|+|+|+.+
T Consensus 3 ~~~~dViIvGgG~aGl~~A~~La~~-G~~V~liE~~~ 38 (391)
T PRK08020 3 NQPTDIAIVGGGMVGAALALGLAQH-GFSVAVLEHAA 38 (391)
T ss_pred cccccEEEECcCHHHHHHHHHHhcC-CCEEEEEcCCC
Confidence 3569999999999999999999998 99999999864
No 163
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=98.06 E-value=3.5e-06 Score=82.60 Aligned_cols=37 Identities=24% Similarity=0.465 Sum_probs=34.0
Q ss_pred CCcccEEEECCCchHHHHHhHhhcCCCceEEEEecCCC
Q psy10417 21 LDEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDE 58 (385)
Q Consensus 21 ~~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~ 58 (385)
+..+||||||+|++|+++|..|++. |.+|+|+|++..
T Consensus 3 ~~~~dv~IvGgG~aGl~~A~~L~~~-G~~v~v~E~~~~ 39 (388)
T PRK07608 3 HMKFDVVVVGGGLVGASLALALAQS-GLRVALLAPRAP 39 (388)
T ss_pred CccCCEEEECcCHHHHHHHHHHHhC-CCeEEEEecCCC
Confidence 3468999999999999999999998 999999999864
No 164
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=98.05 E-value=3.4e-06 Score=84.54 Aligned_cols=33 Identities=33% Similarity=0.567 Sum_probs=31.7
Q ss_pred cccEEEECCCchHHHHHhHhhcCCCceEEEEecC
Q psy10417 23 EYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAG 56 (385)
Q Consensus 23 ~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G 56 (385)
+||++|||+|++|..+|.++++. |++|+|+|++
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~-G~~V~lie~~ 34 (446)
T TIGR01424 2 DYDLFVIGAGSGGVRAARLAANH-GAKVAIAEEP 34 (446)
T ss_pred cccEEEECCCHHHHHHHHHHHhC-CCcEEEEecC
Confidence 69999999999999999999998 9999999985
No 165
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=98.02 E-value=4.3e-06 Score=82.65 Aligned_cols=34 Identities=38% Similarity=0.629 Sum_probs=32.2
Q ss_pred cccEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417 23 EYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD 57 (385)
Q Consensus 23 ~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~ 57 (385)
+|||+|||+|++|+++|..|+++ |.+|+|+|+.+
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~-G~~v~viE~~~ 35 (405)
T PRK05714 2 RADLLIVGAGMVGSALALALQGS-GLEVLLLDGGP 35 (405)
T ss_pred CccEEEECccHHHHHHHHHHhcC-CCEEEEEcCCC
Confidence 58999999999999999999998 99999999975
No 166
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=98.02 E-value=3.7e-06 Score=83.00 Aligned_cols=33 Identities=24% Similarity=0.427 Sum_probs=31.1
Q ss_pred ccEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417 24 YDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD 57 (385)
Q Consensus 24 ~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~ 57 (385)
+||||||+|++|+++|+.||++ |++|+|||+..
T Consensus 1 ~~VvIVGaGPAG~~aA~~la~~-G~~V~llE~~~ 33 (398)
T TIGR02028 1 LRVAVVGGGPAGASAAETLASA-GIQTFLLERKP 33 (398)
T ss_pred CeEEEECCcHHHHHHHHHHHhC-CCcEEEEecCC
Confidence 6999999999999999999998 99999999853
No 167
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.01 E-value=4.9e-06 Score=83.14 Aligned_cols=35 Identities=34% Similarity=0.567 Sum_probs=33.0
Q ss_pred CcccEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417 22 DEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD 57 (385)
Q Consensus 22 ~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~ 57 (385)
++|||||||||+||+.+|.+|++. |++|+|+|+++
T Consensus 2 ~~~dvvVIG~GpaG~~aA~~l~~~-g~~V~liE~~~ 36 (438)
T PRK07251 2 LTYDLIVIGFGKAGKTLAAKLASA-GKKVALVEESK 36 (438)
T ss_pred CccCEEEECCCHHHHHHHHHHHhC-CCEEEEEecCC
Confidence 479999999999999999999998 99999999975
No 168
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=98.00 E-value=6.5e-06 Score=76.28 Aligned_cols=37 Identities=32% Similarity=0.646 Sum_probs=33.6
Q ss_pred cccEEEECCCchHHHHHhHhhcCCCceEEEEecCCCCC
Q psy10417 23 EYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDEDR 60 (385)
Q Consensus 23 ~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~~ 60 (385)
.||++|||||.+|+++|..|++. |++|||+||-+.+.
T Consensus 1 ~fd~lIVGaGlsG~V~A~~a~~~-gk~VLIvekR~HIG 37 (374)
T COG0562 1 MFDYLIVGAGLSGAVIAEVAAQL-GKRVLIVEKRNHIG 37 (374)
T ss_pred CCcEEEECCchhHHHHHHHHHHc-CCEEEEEeccccCC
Confidence 38999999999999999999998 99999999977654
No 169
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=97.99 E-value=5.1e-06 Score=81.58 Aligned_cols=34 Identities=32% Similarity=0.610 Sum_probs=32.0
Q ss_pred cccEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417 23 EYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD 57 (385)
Q Consensus 23 ~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~ 57 (385)
++||+|||+|++|+++|..|+++ |.+|+|+|+.+
T Consensus 3 ~~dv~IvGgG~aGl~~A~~L~~~-G~~v~l~E~~~ 36 (384)
T PRK08849 3 KYDIAVVGGGMVGAATALGFAKQ-GRSVAVIEGGE 36 (384)
T ss_pred cccEEEECcCHHHHHHHHHHHhC-CCcEEEEcCCC
Confidence 58999999999999999999998 99999999864
No 170
>PTZ00058 glutathione reductase; Provisional
Probab=97.98 E-value=6.5e-06 Score=84.39 Aligned_cols=36 Identities=36% Similarity=0.539 Sum_probs=33.3
Q ss_pred CCcccEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417 21 LDEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD 57 (385)
Q Consensus 21 ~~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~ 57 (385)
..+||+||||+|++|..+|.++++. |.+|+|+|++.
T Consensus 46 ~~~yDvvVIG~G~aG~~aA~~aa~~-G~~ValIEk~~ 81 (561)
T PTZ00058 46 RMVYDLIVIGGGSGGMAAARRAARN-KAKVALVEKDY 81 (561)
T ss_pred CccccEEEECcCHHHHHHHHHHHHc-CCeEEEEeccc
Confidence 3579999999999999999999998 99999999863
No 171
>KOG0029|consensus
Probab=97.98 E-value=6.2e-06 Score=83.12 Aligned_cols=42 Identities=29% Similarity=0.453 Sum_probs=37.4
Q ss_pred CCCCcccEEEECCCchHHHHHhHhhcCCCceEEEEecCCCCCc
Q psy10417 19 RLLDEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDEDRI 61 (385)
Q Consensus 19 ~~~~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~~~ 61 (385)
...+..+|||||||++|++||++|.+. |.+|+|||+-+..+.
T Consensus 11 ~~~~~~~VIVIGAGiaGLsAArqL~~~-G~~V~VLEARdRvGG 52 (501)
T KOG0029|consen 11 EAGKKKKVIVIGAGLAGLSAARQLQDF-GFDVLVLEARDRVGG 52 (501)
T ss_pred cccCCCcEEEECCcHHHHHHHHHHHHc-CCceEEEeccCCcCc
Confidence 445678999999999999999999998 999999999877653
No 172
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=97.98 E-value=5.5e-06 Score=81.88 Aligned_cols=35 Identities=29% Similarity=0.514 Sum_probs=32.5
Q ss_pred CCcccEEEECCCchHHHHHhHhhcCCCceEEEEecC
Q psy10417 21 LDEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAG 56 (385)
Q Consensus 21 ~~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G 56 (385)
+..+||+|||+|++|+++|..|+++ |.+|+|+|+.
T Consensus 2 m~~~dV~IvGaG~~Gl~~A~~L~~~-G~~v~viE~~ 36 (405)
T PRK08850 2 MQSVDVAIIGGGMVGLALAAALKES-DLRIAVIEGQ 36 (405)
T ss_pred CCcCCEEEECccHHHHHHHHHHHhC-CCEEEEEcCC
Confidence 3468999999999999999999998 9999999985
No 173
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=97.97 E-value=6.2e-06 Score=83.24 Aligned_cols=36 Identities=42% Similarity=0.763 Sum_probs=33.5
Q ss_pred CCcccEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417 21 LDEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD 57 (385)
Q Consensus 21 ~~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~ 57 (385)
...||+||||||++|+.+|.+|++. |++|+|+|++.
T Consensus 2 ~~~ydvvVIG~GpaG~~aA~~aa~~-G~~v~lie~~~ 37 (472)
T PRK05976 2 AKEYDLVIIGGGPGGYVAAIRAGQL-GLKTALVEKGK 37 (472)
T ss_pred CccccEEEECCCHHHHHHHHHHHhC-CCeEEEEEccC
Confidence 4579999999999999999999998 99999999864
No 174
>KOG2852|consensus
Probab=97.96 E-value=6.1e-06 Score=75.24 Aligned_cols=102 Identities=13% Similarity=0.160 Sum_probs=60.9
Q ss_pred hhhhhccCCCeEEEeCcEEEEEEEcCCCCeEEEEEEEe-CCeEEEEEeCcEEEEcCCCcccHHHHHHcCCCChhhhhhcC
Q psy10417 260 YLKPIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVK-NGHKRSVFARKEVIVSSGAFNSPKLLMLSGVGPREHLTELG 338 (385)
Q Consensus 260 ~l~~~~~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~-~g~~~~i~a~k~VVlAaGa~~tp~LL~~Sgig~~~~l~~~g 338 (385)
.+..+.++.|++++.+ .|.++.-+ .+|+.+|-..- .+..+...+. .||||+|. +|++||..-+|. .++.+-
T Consensus 153 i~sea~k~~~V~lv~G-kv~ev~dE--k~r~n~v~~ae~~~ti~~~d~~-~ivvsaGP-WTskllp~~rIs---glrihs 224 (380)
T KOG2852|consen 153 ILSEAEKRGGVKLVFG-KVKEVSDE--KHRINSVPKAEAEDTIIKADVH-KIVVSAGP-WTSKLLPFTRIS---GLRIHS 224 (380)
T ss_pred HHHHHHhhcCeEEEEe-eeEEeecc--cccccccchhhhcCceEEeeee-EEEEecCC-Cchhhccccccc---eeeeee
Confidence 3455667778999997 67777644 57777776652 2334456674 79999996 889998875542 233333
Q ss_pred CCccccccch-hhhhhccCCCceEEEEcCCccchhhhh
Q psy10417 339 IPVVQDLRVG-DNLMEHVAYSALTFGINKTFSVVTKRL 375 (385)
Q Consensus 339 i~~~~~~pvG-~~l~dh~~~~~~~~~~~~~~~~~~~~~ 375 (385)
|... +| .++.+|.. .+.+..+......+-++
T Consensus 225 I~l~----~~e~~v~~~av--f~~l~~~~g~ei~~pe~ 256 (380)
T KOG2852|consen 225 ITLS----PGEKPVGPSAV--FCELNTMDGLEICKPEE 256 (380)
T ss_pred EEec----CCCCCCCCceE--EEEEEeCCCccccCcce
Confidence 3221 22 22555554 35666666544443333
No 175
>PLN02463 lycopene beta cyclase
Probab=97.96 E-value=7.1e-06 Score=81.93 Aligned_cols=38 Identities=29% Similarity=0.434 Sum_probs=34.0
Q ss_pred CCCCcccEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417 19 RLLDEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD 57 (385)
Q Consensus 19 ~~~~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~ 57 (385)
.....|||+|||+|++|+++|..|+++ |++|+|||+.+
T Consensus 24 ~~~~~~DVvIVGaGpAGLalA~~La~~-Gl~V~liE~~~ 61 (447)
T PLN02463 24 SKSRVVDLVVVGGGPAGLAVAQQVSEA-GLSVCCIDPSP 61 (447)
T ss_pred ccccCceEEEECCCHHHHHHHHHHHHC-CCeEEEeccCc
Confidence 345579999999999999999999998 99999999864
No 176
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=97.94 E-value=6.9e-06 Score=77.69 Aligned_cols=63 Identities=24% Similarity=0.382 Sum_probs=47.9
Q ss_pred hhhhccCCCeEEEeCcEEEEEEEcCCCCeEEEEEEEeC-CeEEEEEeCcEEEEcCCCcccHHHHHHcCC
Q psy10417 261 LKPIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVKN-GHKRSVFARKEVIVSSGAFNSPKLLMLSGV 328 (385)
Q Consensus 261 l~~~~~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~~-g~~~~i~a~k~VVlAaGa~~tp~LL~~Sgi 328 (385)
.+.+.++.++.+++++.+++|.-+ + +.+|.+.+. ++...+..+ .|+++.|...+..++...++
T Consensus 185 ~~~l~~~~~i~~~~~~~i~ei~G~--~--v~~v~l~~~~~~~~~~~~~-gvf~~iG~~p~~~~~~~~~~ 248 (305)
T COG0492 185 VERLKKNVKIEVLTNTVVKEILGD--D--VEGVVLKNVKGEEKELPVD-GVFIAIGHLPNTELLKGLGV 248 (305)
T ss_pred HHHHHhcCCeEEEeCCceeEEecC--c--cceEEEEecCCceEEEEec-eEEEecCCCCchHHHhhccc
Confidence 333334558999999999999865 3 788888865 667788886 79999998777777776554
No 177
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.94 E-value=7.8e-06 Score=82.39 Aligned_cols=35 Identities=34% Similarity=0.621 Sum_probs=32.7
Q ss_pred CcccEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417 22 DEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD 57 (385)
Q Consensus 22 ~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~ 57 (385)
.+||+||||+|++|+++|.+|++. |++|+|+|++.
T Consensus 3 ~~~DvvIIG~GpaG~~AA~~aa~~-G~~V~lie~~~ 37 (466)
T PRK07818 3 THYDVVVLGAGPGGYVAAIRAAQL-GLKTAVVEKKY 37 (466)
T ss_pred CcCCEEEECCCHHHHHHHHHHHhC-CCeEEEEecCC
Confidence 469999999999999999999998 99999999863
No 178
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=97.94 E-value=8.5e-06 Score=79.31 Aligned_cols=36 Identities=39% Similarity=0.713 Sum_probs=32.9
Q ss_pred ccEEEECCCchHHHHHhHhhcCCCceEEEEecCCCCC
Q psy10417 24 YDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDEDR 60 (385)
Q Consensus 24 ~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~~ 60 (385)
+||+|||+|++|+++|++|++. |.+|+|||+.+...
T Consensus 2 ~DvvIIGaG~aGlsaA~~La~~-G~~V~viEk~~~iG 37 (377)
T TIGR00031 2 FDYIIVGAGLSGIVLANILAQL-NKRVLVVEKRNHIG 37 (377)
T ss_pred CcEEEECCCHHHHHHHHHHHhC-CCeEEEEecCCCCC
Confidence 7999999999999999999998 99999999976543
No 179
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=97.93 E-value=8.5e-06 Score=81.98 Aligned_cols=37 Identities=24% Similarity=0.424 Sum_probs=33.8
Q ss_pred CcccEEEECCCchHHHHHhHhhcCCCceEEEEecCCCC
Q psy10417 22 DEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDED 59 (385)
Q Consensus 22 ~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~ 59 (385)
..|||+|||+|++|+.+|.+|++. |++|+|+|+++..
T Consensus 4 ~~yDvvVIGaGpaG~~aA~~la~~-G~~v~liE~~~~~ 40 (461)
T PRK05249 4 YDYDLVVIGSGPAGEGAAMQAAKL-GKRVAVIERYRNV 40 (461)
T ss_pred ccccEEEECCCHHHHHHHHHHHhC-CCEEEEEeccccc
Confidence 469999999999999999999998 9999999997543
No 180
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=97.92 E-value=6.9e-05 Score=75.14 Aligned_cols=54 Identities=24% Similarity=0.351 Sum_probs=37.8
Q ss_pred hHHhhhhhccCCCeEEEeCcEEEEEEEcCCCCeEEEEEEEeCCeEEEEEeCcEEEEcCCC
Q psy10417 257 SKAYLKPIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVKNGHKRSVFARKEVIVSSGA 316 (385)
Q Consensus 257 ~~~~l~~~~~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~~g~~~~i~a~k~VVlAaGa 316 (385)
...+|...+.+.|++++.++ |+++..++ ++.+++|++.++ .+++|+ -||=|+|.
T Consensus 156 fd~~L~~~A~~~Gv~~~~g~-V~~v~~~~-~g~i~~v~~~~g---~~i~ad-~~IDASG~ 209 (454)
T PF04820_consen 156 FDQFLRRHAEERGVEVIEGT-VVDVELDE-DGRITAVRLDDG---RTIEAD-FFIDASGR 209 (454)
T ss_dssp HHHHHHHHHHHTT-EEEET--EEEEEE-T-TSEEEEEEETTS---EEEEES-EEEE-SGG
T ss_pred HHHHHHHHHhcCCCEEEeCE-EEEEEEcC-CCCEEEEEECCC---CEEEEe-EEEECCCc
Confidence 34466666666799999885 88888876 688988888763 278995 88888883
No 181
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=97.91 E-value=8.6e-06 Score=83.84 Aligned_cols=37 Identities=30% Similarity=0.455 Sum_probs=33.7
Q ss_pred CCcccEEEECCCchHHHHHhHhhcCCCceEEEEecCCC
Q psy10417 21 LDEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDE 58 (385)
Q Consensus 21 ~~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~ 58 (385)
...|||+|||||+||+++|.+|+++ |++|+|+|++..
T Consensus 2 ~~~yDVvIIGgGpAGL~AA~~lar~-g~~V~liE~~~~ 38 (555)
T TIGR03143 2 EEIYDLIIIGGGPAGLSAGIYAGRA-KLDTLIIEKDDF 38 (555)
T ss_pred CCcCcEEEECCCHHHHHHHHHHHHC-CCCEEEEecCCC
Confidence 4469999999999999999999998 999999999753
No 182
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.91 E-value=8.8e-06 Score=82.02 Aligned_cols=34 Identities=35% Similarity=0.614 Sum_probs=31.8
Q ss_pred CcccEEEECCCchHHHHHhHhhcCCCceEEEEecC
Q psy10417 22 DEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAG 56 (385)
Q Consensus 22 ~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G 56 (385)
.+||++|||+|++|+++|.+|++. |++|+|+|+.
T Consensus 2 ~~~DvvVIG~GpaG~~AA~~aa~~-G~~V~liE~~ 35 (466)
T PRK06115 2 ASYDVVIIGGGPGGYNAAIRAGQL-GLKVACVEGR 35 (466)
T ss_pred CcccEEEECCCHHHHHHHHHHHhC-CCeEEEEecC
Confidence 359999999999999999999998 9999999973
No 183
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.90 E-value=0.00011 Score=68.95 Aligned_cols=59 Identities=19% Similarity=0.282 Sum_probs=49.9
Q ss_pred ccCCCeEEEeCcEEEEEEEcCCCCeEEEEEEEe--CCeEEEEEeCcEEEEcCCCcccHHHHHHc
Q psy10417 265 IDRTNLHVIKNSRVVKIIIDPISKQAKGVELVK--NGHKRSVFARKEVIVSSGAFNSPKLLMLS 326 (385)
Q Consensus 265 ~~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~--~g~~~~i~a~k~VVlAaGa~~tp~LL~~S 326 (385)
..-+|++|++|+.-++|.=| +.+|+|+.|.+ .|+.+.+.-. .|.+--|-+.+..+|.-+
T Consensus 400 ~sl~Nv~ii~na~Ttei~Gd--g~kV~Gl~Y~dr~sge~~~l~Le-GvFVqIGL~PNT~WLkg~ 460 (520)
T COG3634 400 RSLPNVTIITNAQTTEVKGD--GDKVTGLEYRDRVSGEEHHLELE-GVFVQIGLLPNTEWLKGA 460 (520)
T ss_pred hcCCCcEEEecceeeEEecC--CceecceEEEeccCCceeEEEee-eeEEEEecccChhHhhch
Confidence 34689999999999999877 78999999986 4777788875 699999999999988755
No 184
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=97.90 E-value=1e-05 Score=81.40 Aligned_cols=34 Identities=47% Similarity=0.797 Sum_probs=32.2
Q ss_pred CcccEEEECCCchHHHHHhHhhcCCCceEEEEecC
Q psy10417 22 DEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAG 56 (385)
Q Consensus 22 ~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G 56 (385)
.+||+||||||++|+++|.+|++. |++|+|+|++
T Consensus 2 ~~yDvvIIG~G~aGl~aA~~l~~~-g~~v~lie~~ 35 (460)
T PRK06292 2 EKYDVIVIGAGPAGYVAARRAAKL-GKKVALIEKG 35 (460)
T ss_pred CcccEEEECCCHHHHHHHHHHHHC-CCeEEEEeCC
Confidence 569999999999999999999998 9999999994
No 185
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=97.89 E-value=1.1e-05 Score=79.06 Aligned_cols=33 Identities=45% Similarity=0.614 Sum_probs=31.3
Q ss_pred cEEEECCCchHHHHHhHhhcCCC-ceEEEEecCCC
Q psy10417 25 DFIIVGAGVGGCVVAHRLSEVPS-WKVLLIEAGDE 58 (385)
Q Consensus 25 DviIVGsG~aG~~~A~~La~~~G-~~VlvLE~G~~ 58 (385)
||+|||+|++|+++|..|+++ | ++|+|+|+...
T Consensus 1 dv~IvGaG~aGl~~A~~L~~~-G~~~v~v~E~~~~ 34 (382)
T TIGR01984 1 DVIIVGGGLVGLSLALALSRL-GKIKIALIEANSP 34 (382)
T ss_pred CEEEECccHHHHHHHHHHhcC-CCceEEEEeCCCc
Confidence 899999999999999999998 9 99999999764
No 186
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=97.89 E-value=9.1e-06 Score=81.22 Aligned_cols=33 Identities=42% Similarity=0.650 Sum_probs=31.1
Q ss_pred ccEEEECCCchHHHHHhHhhc----CCCceEEEEecCC
Q psy10417 24 YDFIIVGAGVGGCVVAHRLSE----VPSWKVLLIEAGD 57 (385)
Q Consensus 24 ~DviIVGsG~aG~~~A~~La~----~~G~~VlvLE~G~ 57 (385)
|||+|||+|++|+++|..|++ + |.+|+|||+.+
T Consensus 1 ~DV~IVGaGp~Gl~~A~~La~~~~~~-G~~v~viE~~~ 37 (437)
T TIGR01989 1 FDVVIVGGGPVGLALAAALGNNPLTK-DLKVLLLDAVD 37 (437)
T ss_pred CcEEEECCcHHHHHHHHHHhcCcccC-CCeEEEEeCCC
Confidence 799999999999999999999 7 99999999954
No 187
>PTZ00367 squalene epoxidase; Provisional
Probab=97.89 E-value=1.1e-05 Score=82.82 Aligned_cols=38 Identities=42% Similarity=0.584 Sum_probs=34.5
Q ss_pred CCCCcccEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417 19 RLLDEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD 57 (385)
Q Consensus 19 ~~~~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~ 57 (385)
+....|||||||+|++|+++|..|+++ |.+|+|+||..
T Consensus 29 ~~~~~~dViIVGaGiaGlalA~aLar~-G~~V~VlEr~~ 66 (567)
T PTZ00367 29 RTNYDYDVIIVGGSIAGPVLAKALSKQ-GRKVLMLERDL 66 (567)
T ss_pred ccccCccEEEECCCHHHHHHHHHHHhc-CCEEEEEcccc
Confidence 445689999999999999999999998 99999999964
No 188
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.88 E-value=1.2e-05 Score=81.22 Aligned_cols=36 Identities=19% Similarity=0.338 Sum_probs=33.3
Q ss_pred CCcccEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417 21 LDEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD 57 (385)
Q Consensus 21 ~~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~ 57 (385)
..+||+||||+|++|..+|.+|++. |++|+|+|+.+
T Consensus 2 ~~~~DvvVIG~GpaG~~aA~~aa~~-G~~V~lie~~~ 37 (471)
T PRK06467 2 EIKTQVVVLGAGPAGYSAAFRAADL-GLETVCVERYS 37 (471)
T ss_pred CccceEEEECCCHHHHHHHHHHHHC-CCcEEEEecCC
Confidence 3469999999999999999999998 99999999864
No 189
>PRK09897 hypothetical protein; Provisional
Probab=97.88 E-value=0.00024 Score=72.31 Aligned_cols=36 Identities=28% Similarity=0.364 Sum_probs=30.5
Q ss_pred ccEEEECCCchHHHHHhHhhcC-CCceEEEEecCCCC
Q psy10417 24 YDFIIVGAGVGGCVVAHRLSEV-PSWKVLLIEAGDED 59 (385)
Q Consensus 24 ~DviIVGsG~aG~~~A~~La~~-~G~~VlvLE~G~~~ 59 (385)
.+|+|||+|++|+++|.+|++. ...+|+|+|++...
T Consensus 2 ~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~~ 38 (534)
T PRK09897 2 KKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADEA 38 (534)
T ss_pred CeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCCC
Confidence 4799999999999999999885 24589999997644
No 190
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=97.87 E-value=1.2e-05 Score=81.02 Aligned_cols=33 Identities=39% Similarity=0.736 Sum_probs=31.3
Q ss_pred cccEEEECCCchHHHHHhHhhcCCCceEEEEecC
Q psy10417 23 EYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAG 56 (385)
Q Consensus 23 ~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G 56 (385)
.|||||||||++|+.+|.+|++. |.+|+|+|++
T Consensus 1 ~yDvvVIG~G~aGl~aA~~la~~-G~~v~lie~~ 33 (461)
T TIGR01350 1 AYDVVVIGGGPGGYVAAIRAAQL-GLKVALVEKE 33 (461)
T ss_pred CccEEEECCCHHHHHHHHHHHhC-CCeEEEEecC
Confidence 48999999999999999999998 9999999993
No 191
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=97.87 E-value=1.1e-05 Score=79.25 Aligned_cols=33 Identities=30% Similarity=0.515 Sum_probs=31.0
Q ss_pred cEEEECCCchHHHHHhHhhcCCCceEEEEecCCC
Q psy10417 25 DFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDE 58 (385)
Q Consensus 25 DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~ 58 (385)
||||||+|++|+++|+.|+++ |.+|+|||+.+.
T Consensus 1 DviIiGaG~AGl~~A~~la~~-g~~v~liE~~~~ 33 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELARP-GLRVQLIEPHPP 33 (388)
T ss_pred CEEEECCCHHHHHHHHHHHhC-CCeEEEEccCCC
Confidence 899999999999999999998 999999998753
No 192
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=97.86 E-value=1.1e-05 Score=75.85 Aligned_cols=55 Identities=24% Similarity=0.341 Sum_probs=42.3
Q ss_pred CCeEEEeCcEEEEEEEcCCCCeEEEEEEEe--CCeEEEEEeCcEEEEcCCCcccHHHHHHc
Q psy10417 268 TNLHVIKNSRVVKIIIDPISKQAKGVELVK--NGHKRSVFARKEVIVSSGAFNSPKLLMLS 326 (385)
Q Consensus 268 ~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~--~g~~~~i~a~k~VVlAaGa~~tp~LL~~S 326 (385)
.|+++++++.|+++..+ +++.+|++.+ +++..++.++ .||+|+|.-.+..+|..+
T Consensus 190 ~gv~~~~~~~v~~i~~~---~~~~~v~~~~~~~g~~~~i~~D-~vi~a~G~~~~~~~l~~~ 246 (300)
T TIGR01292 190 PNIEFLWNSTVKEIVGD---NKVEGVKIKNTVTGEEEELKVD-GVFIAIGHEPNTELLKGL 246 (300)
T ss_pred CCeEEEeccEEEEEEcc---CcEEEEEEEecCCCceEEEEcc-EEEEeeCCCCChHHHHHh
Confidence 49999999999999754 3677777654 3566789996 899999976666676654
No 193
>PLN02546 glutathione reductase
Probab=97.85 E-value=1.3e-05 Score=82.33 Aligned_cols=32 Identities=25% Similarity=0.452 Sum_probs=30.9
Q ss_pred cccEEEECCCchHHHHHhHhhcCCCceEEEEec
Q psy10417 23 EYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEA 55 (385)
Q Consensus 23 ~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~ 55 (385)
+|||||||+|++|..+|.+||+. |++|+|+|+
T Consensus 79 ~yDvvVIG~GpaG~~aA~~aa~~-G~~V~liE~ 110 (558)
T PLN02546 79 DFDLFTIGAGSGGVRASRFASNF-GASAAVCEL 110 (558)
T ss_pred CCCEEEECCCHHHHHHHHHHHHC-CCeEEEEec
Confidence 69999999999999999999998 999999996
No 194
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=97.85 E-value=1.2e-05 Score=79.12 Aligned_cols=34 Identities=21% Similarity=0.402 Sum_probs=32.2
Q ss_pred cccEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417 23 EYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD 57 (385)
Q Consensus 23 ~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~ 57 (385)
.+||+|||+|++|+++|..|+++ |++|+|+|+.+
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~-G~~v~viE~~~ 35 (390)
T TIGR02360 2 KTQVAIIGAGPSGLLLGQLLHKA-GIDNVILERQS 35 (390)
T ss_pred CceEEEECccHHHHHHHHHHHHC-CCCEEEEECCC
Confidence 47999999999999999999998 99999999975
No 195
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=97.85 E-value=1.4e-05 Score=78.27 Aligned_cols=34 Identities=44% Similarity=0.635 Sum_probs=30.9
Q ss_pred cEEEECCCchHHHHHhHh--hcCCCceEEEEecCCCC
Q psy10417 25 DFIIVGAGVGGCVVAHRL--SEVPSWKVLLIEAGDED 59 (385)
Q Consensus 25 DviIVGsG~aG~~~A~~L--a~~~G~~VlvLE~G~~~ 59 (385)
||||||+|+||+++|++| ++. |.+|+|||+....
T Consensus 1 DviIvGaGpAGlslA~~l~~~~~-g~~Vllid~~~~~ 36 (374)
T PF05834_consen 1 DVIIVGAGPAGLSLARRLADARP-GLSVLLIDPKPKP 36 (374)
T ss_pred CEEEECCcHHHHHHHHHHHhcCC-CCEEEEEcCCccc
Confidence 899999999999999999 666 9999999997644
No 196
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=97.84 E-value=1.4e-05 Score=80.81 Aligned_cols=34 Identities=41% Similarity=0.698 Sum_probs=32.2
Q ss_pred CCcccEEEECCCchHHHHHhHhhcCCCceEEEEec
Q psy10417 21 LDEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEA 55 (385)
Q Consensus 21 ~~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~ 55 (385)
..+||+||||+|++|+++|.+|++. |++|+|+|+
T Consensus 2 ~~~~DviIIG~G~aG~~aA~~~~~~-g~~v~lie~ 35 (475)
T PRK06327 2 SKQFDVVVIGAGPGGYVAAIRAAQL-GLKVACIEA 35 (475)
T ss_pred CcceeEEEECCCHHHHHHHHHHHhC-CCeEEEEec
Confidence 3579999999999999999999998 999999998
No 197
>PRK06834 hypothetical protein; Provisional
Probab=97.83 E-value=1.4e-05 Score=81.00 Aligned_cols=35 Identities=26% Similarity=0.375 Sum_probs=32.8
Q ss_pred CcccEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417 22 DEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD 57 (385)
Q Consensus 22 ~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~ 57 (385)
.++||||||+|++|+++|..|+++ |.+|+|||+.+
T Consensus 2 ~~~dVlIVGaGp~Gl~lA~~La~~-G~~v~vlEr~~ 36 (488)
T PRK06834 2 TEHAVVIAGGGPTGLMLAGELALA-GVDVAIVERRP 36 (488)
T ss_pred CcceEEEECCCHHHHHHHHHHHHC-CCcEEEEecCC
Confidence 468999999999999999999998 99999999865
No 198
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=97.83 E-value=1.5e-05 Score=78.32 Aligned_cols=35 Identities=43% Similarity=0.557 Sum_probs=31.7
Q ss_pred CcccEEEECCCchHHHHHhHhhcC--CCceEEEEecC
Q psy10417 22 DEYDFIIVGAGVGGCVVAHRLSEV--PSWKVLLIEAG 56 (385)
Q Consensus 22 ~~~DviIVGsG~aG~~~A~~La~~--~G~~VlvLE~G 56 (385)
..+||+|||+|++|+++|..|+++ .|.+|+|+||-
T Consensus 2 ~~~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~ 38 (395)
T PRK05732 2 SRMDVIIVGGGMAGATLALALSRLSHGGLPVALIEAF 38 (395)
T ss_pred CcCCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCC
Confidence 568999999999999999999874 39999999985
No 199
>PLN02268 probable polyamine oxidase
Probab=97.83 E-value=1.9e-05 Score=78.78 Aligned_cols=36 Identities=33% Similarity=0.558 Sum_probs=33.6
Q ss_pred cEEEECCCchHHHHHhHhhcCCCceEEEEecCCCCCc
Q psy10417 25 DFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDEDRI 61 (385)
Q Consensus 25 DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~~~ 61 (385)
+|||||+|++|+++|+.|.++ |++|+|||+.+....
T Consensus 2 ~VvVIGaGisGL~aA~~L~~~-g~~v~vlEa~~r~GG 37 (435)
T PLN02268 2 SVIVIGGGIAGIAAARALHDA-SFKVTLLESRDRIGG 37 (435)
T ss_pred CEEEECCCHHHHHHHHHHHhC-CCeEEEEeCCCCCCc
Confidence 799999999999999999998 999999999888754
No 200
>PRK07236 hypothetical protein; Provisional
Probab=97.83 E-value=1.5e-05 Score=78.35 Aligned_cols=36 Identities=22% Similarity=0.463 Sum_probs=33.2
Q ss_pred CCcccEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417 21 LDEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD 57 (385)
Q Consensus 21 ~~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~ 57 (385)
++..||+|||+|++|+++|..|+++ |.+|+|+||.+
T Consensus 4 ~~~~~ViIVGaG~aGl~~A~~L~~~-G~~v~v~E~~~ 39 (386)
T PRK07236 4 MSGPRAVVIGGSLGGLFAALLLRRA-GWDVDVFERSP 39 (386)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHhC-CCCEEEEecCC
Confidence 4468999999999999999999998 99999999875
No 201
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=97.81 E-value=1.6e-05 Score=80.08 Aligned_cols=33 Identities=30% Similarity=0.623 Sum_probs=31.6
Q ss_pred ccEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417 24 YDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD 57 (385)
Q Consensus 24 ~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~ 57 (385)
||+||||+|++|+++|.+|++. |++|+|+|++.
T Consensus 1 yDvvVIGaGpaG~~aA~~aa~~-g~~v~lie~~~ 33 (463)
T TIGR02053 1 YDLVIIGSGAAAFAAAIKAAEL-GASVAMVERGP 33 (463)
T ss_pred CCEEEECCCHHHHHHHHHHHHC-CCeEEEEeCCc
Confidence 7999999999999999999998 99999999865
No 202
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=97.81 E-value=2.2e-05 Score=82.00 Aligned_cols=43 Identities=30% Similarity=0.414 Sum_probs=37.7
Q ss_pred hcCCCCCCCcccEEEECCCchHHHHHhHhhc-CCCceEEEEecCC
Q psy10417 14 LYGNKRLLDEYDFIIVGAGVGGCVVAHRLSE-VPSWKVLLIEAGD 57 (385)
Q Consensus 14 ~~~~~~~~~~~DviIVGsG~aG~~~A~~La~-~~G~~VlvLE~G~ 57 (385)
+..+..+.+++||+|||+|++|+++|..|++ . |.+|+|||+.+
T Consensus 23 ~~~~~~~~~~~dVlIVGAGPaGL~lA~~Lar~~-Gi~v~IiE~~~ 66 (634)
T PRK08294 23 INRPADLPDEVDVLIVGCGPAGLTLAAQLSAFP-DITTRIVERKP 66 (634)
T ss_pred CCCcccCCCCCCEEEECCCHHHHHHHHHHhcCC-CCcEEEEEcCC
Confidence 4445557779999999999999999999999 6 99999999865
No 203
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=97.80 E-value=1.7e-05 Score=79.38 Aligned_cols=35 Identities=31% Similarity=0.452 Sum_probs=32.1
Q ss_pred cEEEECCCchHHHHHhHhhcCCC--ceEEEEecCCCCC
Q psy10417 25 DFIIVGAGVGGCVVAHRLSEVPS--WKVLLIEAGDEDR 60 (385)
Q Consensus 25 DviIVGsG~aG~~~A~~La~~~G--~~VlvLE~G~~~~ 60 (385)
+|+|||||++|+++|+.|+++ | ++|+|||+.+...
T Consensus 2 ~v~IVGaGiaGL~aA~~L~~~-G~~~~V~vlEa~~~~G 38 (451)
T PRK11883 2 KVAIIGGGITGLSAAYRLHKK-GPDADITLLEASDRLG 38 (451)
T ss_pred eEEEECCCHHHHHHHHHHHHh-CCCCCEEEEEcCCCCc
Confidence 689999999999999999997 7 8999999987764
No 204
>PRK14694 putative mercuric reductase; Provisional
Probab=97.79 E-value=1.8e-05 Score=79.74 Aligned_cols=36 Identities=25% Similarity=0.385 Sum_probs=33.6
Q ss_pred CCcccEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417 21 LDEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD 57 (385)
Q Consensus 21 ~~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~ 57 (385)
..+||+||||+|++|+++|.+|++. |++|+|+|++.
T Consensus 4 ~~~~dviVIGaG~aG~~aA~~l~~~-g~~v~lie~~~ 39 (468)
T PRK14694 4 DNNLHIAVIGSGGSAMAAALKATER-GARVTLIERGT 39 (468)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHhC-CCcEEEEEccc
Confidence 4579999999999999999999998 99999999974
No 205
>PRK07233 hypothetical protein; Provisional
Probab=97.79 E-value=1.9e-05 Score=78.41 Aligned_cols=36 Identities=33% Similarity=0.451 Sum_probs=33.0
Q ss_pred cEEEECCCchHHHHHhHhhcCCCceEEEEecCCCCCc
Q psy10417 25 DFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDEDRI 61 (385)
Q Consensus 25 DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~~~ 61 (385)
+|||||+|++|+++|+.|+++ |++|+|||+.+....
T Consensus 1 ~vvVIGaGiaGL~aA~~L~~~-G~~v~vlE~~~~~GG 36 (434)
T PRK07233 1 KIAIVGGGIAGLAAAYRLAKR-GHEVTVFEADDQLGG 36 (434)
T ss_pred CEEEECCCHHHHHHHHHHHHC-CCcEEEEEeCCCCCC
Confidence 589999999999999999998 999999999887643
No 206
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=97.78 E-value=2.2e-05 Score=78.21 Aligned_cols=36 Identities=42% Similarity=0.793 Sum_probs=33.7
Q ss_pred CCcccEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417 21 LDEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD 57 (385)
Q Consensus 21 ~~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~ 57 (385)
..+||+||||+|++|-++|.++|+. |.+|+++|+++
T Consensus 2 ~~~yDvvVIG~GpaG~~aA~raa~~-G~kvalvE~~~ 37 (454)
T COG1249 2 MKEYDVVVIGAGPAGYVAAIRAAQL-GLKVALVEKGE 37 (454)
T ss_pred CccccEEEECCCHHHHHHHHHHHhC-CCCEEEEeecC
Confidence 4689999999999999999999998 99999999985
No 207
>PRK13748 putative mercuric reductase; Provisional
Probab=97.77 E-value=2.1e-05 Score=81.17 Aligned_cols=35 Identities=26% Similarity=0.370 Sum_probs=32.8
Q ss_pred CcccEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417 22 DEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD 57 (385)
Q Consensus 22 ~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~ 57 (385)
.+||+||||+|++|+++|.+|++. |++|+|+|++.
T Consensus 97 ~~~DvvVIG~GpaG~~aA~~~~~~-G~~v~lie~~~ 131 (561)
T PRK13748 97 RPLHVAVIGSGGAAMAAALKAVEQ-GARVTLIERGT 131 (561)
T ss_pred CCCCEEEECcCHHHHHHHHHHHhC-CCeEEEEecCc
Confidence 469999999999999999999998 99999999873
No 208
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=97.77 E-value=2.1e-05 Score=77.73 Aligned_cols=36 Identities=33% Similarity=0.425 Sum_probs=33.3
Q ss_pred cEEEECCCchHHHHHhHhhcCCCceEEEEecCCCCCc
Q psy10417 25 DFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDEDRI 61 (385)
Q Consensus 25 DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~~~ 61 (385)
-|+|+|+|+||+++|++||++ |++|+|+|++++...
T Consensus 2 rVai~GaG~AgL~~a~~La~~-g~~vt~~ea~~~~GG 37 (485)
T COG3349 2 RVAIAGAGLAGLAAAYELADA-GYDVTLYEARDRLGG 37 (485)
T ss_pred eEEEEcccHHHHHHHHHHHhC-CCceEEEeccCccCc
Confidence 489999999999999999999 999999999988753
No 209
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=97.76 E-value=2.2e-05 Score=81.83 Aligned_cols=33 Identities=39% Similarity=0.616 Sum_probs=31.6
Q ss_pred cccEEEECCCchHHHHHhHhhcCCCceEEEEecC
Q psy10417 23 EYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAG 56 (385)
Q Consensus 23 ~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G 56 (385)
+||+||||+|++|..+|.++++. |++|+|+|++
T Consensus 116 ~yDviVIG~G~gG~~aA~~aa~~-G~kV~lie~~ 148 (659)
T PTZ00153 116 EYDVGIIGCGVGGHAAAINAMER-GLKVIIFTGD 148 (659)
T ss_pred cCCEEEECCCHHHHHHHHHHHHC-CCcEEEEeCC
Confidence 79999999999999999999998 9999999975
No 210
>PTZ00052 thioredoxin reductase; Provisional
Probab=97.75 E-value=2.3e-05 Score=79.58 Aligned_cols=33 Identities=30% Similarity=0.534 Sum_probs=31.5
Q ss_pred cccEEEECCCchHHHHHhHhhcCCCceEEEEecC
Q psy10417 23 EYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAG 56 (385)
Q Consensus 23 ~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G 56 (385)
.||+||||+|++|+.+|.+|++. |++|+|+|++
T Consensus 5 ~yDviVIG~GpaG~~AA~~aa~~-G~~V~lie~~ 37 (499)
T PTZ00052 5 MYDLVVIGGGSGGMAAAKEAAAH-GKKVALFDYV 37 (499)
T ss_pred ccCEEEECCCHHHHHHHHHHHhC-CCeEEEEecc
Confidence 69999999999999999999998 9999999974
No 211
>PRK07588 hypothetical protein; Provisional
Probab=97.74 E-value=2.2e-05 Score=77.13 Aligned_cols=33 Identities=30% Similarity=0.378 Sum_probs=31.0
Q ss_pred ccEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417 24 YDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD 57 (385)
Q Consensus 24 ~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~ 57 (385)
.||+|||+|++|+++|..|+++ |.+|+|+|+.+
T Consensus 1 ~~V~IVGgG~aGl~~A~~L~~~-G~~v~v~E~~~ 33 (391)
T PRK07588 1 MKVAISGAGIAGPTLAYWLRRY-GHEPTLIERAP 33 (391)
T ss_pred CeEEEECccHHHHHHHHHHHHC-CCceEEEeCCC
Confidence 3899999999999999999998 99999999975
No 212
>PRK06753 hypothetical protein; Provisional
Probab=97.74 E-value=2.3e-05 Score=76.45 Aligned_cols=34 Identities=32% Similarity=0.542 Sum_probs=31.6
Q ss_pred ccEEEECCCchHHHHHhHhhcCCCceEEEEecCCC
Q psy10417 24 YDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDE 58 (385)
Q Consensus 24 ~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~ 58 (385)
.||+|||+|++|+++|..|+++ |++|+|+||.+.
T Consensus 1 ~~V~IvGgG~aGl~~A~~L~~~-g~~v~v~E~~~~ 34 (373)
T PRK06753 1 MKIAIIGAGIGGLTAAALLQEQ-GHEVKVFEKNES 34 (373)
T ss_pred CEEEEECCCHHHHHHHHHHHhC-CCcEEEEecCCc
Confidence 3799999999999999999998 999999999764
No 213
>PLN02576 protoporphyrinogen oxidase
Probab=97.73 E-value=3e-05 Score=78.77 Aligned_cols=43 Identities=33% Similarity=0.326 Sum_probs=36.6
Q ss_pred CCCCcccEEEECCCchHHHHHhHhhcCCCceEEEEecCCCCCc
Q psy10417 19 RLLDEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDEDRI 61 (385)
Q Consensus 19 ~~~~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~~~ 61 (385)
.....+||+|||||++|+++|++|+++.|.+|+|||+.+....
T Consensus 8 ~~~~~~~v~IIGaGisGL~aA~~L~~~~g~~v~vlEa~~rvGG 50 (496)
T PLN02576 8 AAASSKDVAVVGAGVSGLAAAYALASKHGVNVLVTEARDRVGG 50 (496)
T ss_pred cccCCCCEEEECcCHHHHHHHHHHHHhcCCCEEEEecCCCCCC
Confidence 4456789999999999999999999843799999999887643
No 214
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain. In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.
Probab=97.73 E-value=0.001 Score=65.17 Aligned_cols=53 Identities=17% Similarity=0.181 Sum_probs=37.2
Q ss_pred hhccCCCeEEEeCcEEEEEEEcCCCCeEEEEEEEeCCeEEEEEeCcEEEEcCCCcccHHHHH
Q psy10417 263 PIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVKNGHKRSVFARKEVIVSSGAFNSPKLLM 324 (385)
Q Consensus 263 ~~~~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~~g~~~~i~a~k~VVlAaGa~~tp~LL~ 324 (385)
..+.+ |++|+.++.|++|..+ +++ ..|.+.+ |. .++|+ .||+|+|+ +++.|+.
T Consensus 143 ~~~~~-G~~i~~~~~V~~i~~~--~~~-~~v~t~~-g~--~~~a~-~vV~a~G~-~~~~l~~ 195 (381)
T TIGR03197 143 AHAGI-RLTLHFNTEITSLERD--GEG-WQLLDAN-GE--VIAAS-VVVLANGA-QAGQLAQ 195 (381)
T ss_pred hccCC-CcEEEeCCEEEEEEEc--CCe-EEEEeCC-CC--EEEcC-EEEEcCCc-ccccccc
Confidence 34556 9999999999999876 444 3354433 32 47885 79999996 5565543
No 215
>PRK06996 hypothetical protein; Provisional
Probab=97.71 E-value=3.1e-05 Score=76.36 Aligned_cols=36 Identities=36% Similarity=0.528 Sum_probs=32.5
Q ss_pred CCcccEEEECCCchHHHHHhHhhcCCC----ceEEEEecCC
Q psy10417 21 LDEYDFIIVGAGVGGCVVAHRLSEVPS----WKVLLIEAGD 57 (385)
Q Consensus 21 ~~~~DviIVGsG~aG~~~A~~La~~~G----~~VlvLE~G~ 57 (385)
.+++||+|||+|++|+++|..|+++ | ++|+|+|+.+
T Consensus 9 ~~~~dv~IvGgGpaG~~~A~~L~~~-g~~~g~~v~l~e~~~ 48 (398)
T PRK06996 9 APDFDIAIVGAGPVGLALAGWLARR-SATRALSIALIDARE 48 (398)
T ss_pred CCCCCEEEECcCHHHHHHHHHHhcC-CCcCCceEEEecCCC
Confidence 5578999999999999999999997 6 5799999975
No 216
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=97.69 E-value=3.2e-05 Score=75.56 Aligned_cols=35 Identities=43% Similarity=0.764 Sum_probs=31.7
Q ss_pred cEEEECCCchHHHHHhHhhcC-CCceEEEEecCCCC
Q psy10417 25 DFIIVGAGVGGCVVAHRLSEV-PSWKVLLIEAGDED 59 (385)
Q Consensus 25 DviIVGsG~aG~~~A~~La~~-~G~~VlvLE~G~~~ 59 (385)
||+|||+|++|+++|.+|+++ +|++|+|||+++..
T Consensus 1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~~ 36 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTI 36 (370)
T ss_pred CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCC
Confidence 899999999999999999984 69999999998643
No 217
>PLN02507 glutathione reductase
Probab=97.69 E-value=2.9e-05 Score=78.86 Aligned_cols=34 Identities=29% Similarity=0.450 Sum_probs=31.9
Q ss_pred CCcccEEEECCCchHHHHHhHhhcCCCceEEEEec
Q psy10417 21 LDEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEA 55 (385)
Q Consensus 21 ~~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~ 55 (385)
..+||+||||+|++|..+|.+|++. |++|+|+|+
T Consensus 23 ~~~yDvvVIG~GpaG~~aA~~a~~~-G~~V~liE~ 56 (499)
T PLN02507 23 HYDFDLFVIGAGSGGVRAARFSANF-GAKVGICEL 56 (499)
T ss_pred ccccCEEEECCCHHHHHHHHHHHHC-CCeEEEEec
Confidence 4479999999999999999999998 999999996
No 218
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=97.68 E-value=3.8e-05 Score=77.23 Aligned_cols=37 Identities=30% Similarity=0.494 Sum_probs=33.3
Q ss_pred ccEEEECCCchHHHHHhHhhcC-C--CceEEEEecCCCCC
Q psy10417 24 YDFIIVGAGVGGCVVAHRLSEV-P--SWKVLLIEAGDEDR 60 (385)
Q Consensus 24 ~DviIVGsG~aG~~~A~~La~~-~--G~~VlvLE~G~~~~ 60 (385)
.||+|||+|++|+++|++|+++ + |++|+|+|+.+...
T Consensus 3 ~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~r~G 42 (462)
T TIGR00562 3 KHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASDRVG 42 (462)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCCcCc
Confidence 6999999999999999999986 2 89999999987764
No 219
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=97.66 E-value=4.8e-05 Score=74.03 Aligned_cols=39 Identities=36% Similarity=0.512 Sum_probs=35.8
Q ss_pred CCcccEEEECCCchHHHHHhHhhcCCCceEEEEecCCCCC
Q psy10417 21 LDEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDEDR 60 (385)
Q Consensus 21 ~~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~~ 60 (385)
.+..||||||+|.+||++|++|.++ |++|+|||+-+...
T Consensus 5 ~~~~~viivGaGlaGL~AA~eL~ka-G~~v~ilEar~r~G 43 (450)
T COG1231 5 PKTADVIIVGAGLAGLSAAYELKKA-GYQVQILEARDRVG 43 (450)
T ss_pred CCCCcEEEECCchHHHHHHHHHhhc-CcEEEEEeccCCcC
Confidence 5678999999999999999999999 99999999977663
No 220
>PLN02568 polyamine oxidase
Probab=97.63 E-value=5.3e-05 Score=77.47 Aligned_cols=40 Identities=28% Similarity=0.479 Sum_probs=35.0
Q ss_pred CCcccEEEECCCchHHHHHhHhhcCCC-----ceEEEEecCCCCCc
Q psy10417 21 LDEYDFIIVGAGVGGCVVAHRLSEVPS-----WKVLLIEAGDEDRI 61 (385)
Q Consensus 21 ~~~~DviIVGsG~aG~~~A~~La~~~G-----~~VlvLE~G~~~~~ 61 (385)
.+..||||||+|++|+++|++|+++ | .+|+|||+......
T Consensus 3 ~~~~~v~iiGaG~aGl~aa~~L~~~-g~~~~~~~v~v~E~~~~~GG 47 (539)
T PLN02568 3 AKKPRIVIIGAGMAGLTAANKLYTS-SAANDMFELTVVEGGDRIGG 47 (539)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHhc-ccccCCceEEEEeCCCCcCC
Confidence 3457999999999999999999987 6 89999999887643
No 221
>PRK10262 thioredoxin reductase; Provisional
Probab=97.60 E-value=4.9e-05 Score=72.68 Aligned_cols=62 Identities=15% Similarity=0.185 Sum_probs=45.8
Q ss_pred hhccCCCeEEEeCcEEEEEEEcCCCCeEEEEEEEeC---CeEEEEEeCcEEEEcCCCcccHHHHHHcCC
Q psy10417 263 PIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVKN---GHKRSVFARKEVIVSSGAFNSPKLLMLSGV 328 (385)
Q Consensus 263 ~~~~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~~---g~~~~i~a~k~VVlAaGa~~tp~LL~~Sgi 328 (385)
..++..|+++++++.|+++.-+ ++++.+|++.+. +...++.++ .||+|.|.-.+..++ .+++
T Consensus 193 ~~l~~~gV~i~~~~~v~~v~~~--~~~~~~v~~~~~~~~~~~~~i~~D-~vv~a~G~~p~~~l~-~~~l 257 (321)
T PRK10262 193 DKVENGNIILHTNRTLEEVTGD--QMGVTGVRLRDTQNSDNIESLDVA-GLFVAIGHSPNTAIF-EGQL 257 (321)
T ss_pred hhccCCCeEEEeCCEEEEEEcC--CccEEEEEEEEcCCCCeEEEEECC-EEEEEeCCccChhHh-hccc
Confidence 3456789999999999999754 456778887753 345579996 899999977776654 3444
No 222
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=97.60 E-value=5.4e-05 Score=66.83 Aligned_cols=32 Identities=38% Similarity=0.556 Sum_probs=29.8
Q ss_pred cEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417 25 DFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD 57 (385)
Q Consensus 25 DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~ 57 (385)
||||||||+||+.+|.+|++. +.+|+++|+.+
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~-~~~v~ii~~~~ 32 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARP-GAKVLIIEKSP 32 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHT-TSEEEEESSSS
T ss_pred CEEEEecHHHHHHHHHHHhcC-CCeEEEEeccc
Confidence 799999999999999999987 99999998754
No 223
>PRK14727 putative mercuric reductase; Provisional
Probab=97.57 E-value=7.3e-05 Score=75.65 Aligned_cols=39 Identities=26% Similarity=0.334 Sum_probs=34.8
Q ss_pred CCCCcccEEEECCCchHHHHHhHhhcCCCceEEEEecCCC
Q psy10417 19 RLLDEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDE 58 (385)
Q Consensus 19 ~~~~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~ 58 (385)
+....||+||||+|++|..+|.+|++. |.+|+|+|++..
T Consensus 12 ~~~~~~dvvvIG~G~aG~~~a~~~~~~-g~~v~~ie~~~~ 50 (479)
T PRK14727 12 RSKLQLHVAIIGSGSAAFAAAIKAAEH-GARVTIIEGADV 50 (479)
T ss_pred cCCCCCcEEEECCCHHHHHHHHHHHhC-CCeEEEEEccCc
Confidence 335579999999999999999999998 999999999743
No 224
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=97.57 E-value=6.3e-05 Score=78.13 Aligned_cols=37 Identities=24% Similarity=0.413 Sum_probs=34.3
Q ss_pred CCCcccEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417 20 LLDEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD 57 (385)
Q Consensus 20 ~~~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~ 57 (385)
..+.++|+|||||++|+++|..|+++ |.+|+|+||.+
T Consensus 78 ~~~~~~VlIVGgGIaGLalAlaL~r~-Gi~V~V~Er~~ 114 (668)
T PLN02927 78 KKKKSRVLVAGGGIGGLVFALAAKKK-GFDVLVFEKDL 114 (668)
T ss_pred ccCCCCEEEECCCHHHHHHHHHHHhc-CCeEEEEeccc
Confidence 46779999999999999999999998 99999999964
No 225
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=97.56 E-value=6.2e-05 Score=73.88 Aligned_cols=35 Identities=26% Similarity=0.304 Sum_probs=32.2
Q ss_pred ccEEEECCCchHHHHHhHhhcCCCceEEEEecCCCC
Q psy10417 24 YDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDED 59 (385)
Q Consensus 24 ~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~ 59 (385)
-||+|||||.+|+.+|+.||++ |++|+|+|+.+..
T Consensus 3 ~dVvVIGGGlAGleAAlaLAr~-Gl~V~LiE~rp~~ 37 (436)
T PRK05335 3 KPVNVIGAGLAGSEAAWQLAKR-GVPVELYEMRPVK 37 (436)
T ss_pred CcEEEECCCHHHHHHHHHHHhC-CCcEEEEEccCcc
Confidence 4999999999999999999998 9999999987644
No 226
>PRK05868 hypothetical protein; Validated
Probab=97.55 E-value=6.3e-05 Score=73.56 Aligned_cols=33 Identities=24% Similarity=0.395 Sum_probs=31.1
Q ss_pred cEEEECCCchHHHHHhHhhcCCCceEEEEecCCC
Q psy10417 25 DFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDE 58 (385)
Q Consensus 25 DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~ 58 (385)
||+|||+|++|+++|..|+++ |++|+|+|+.+.
T Consensus 3 ~V~IvGgG~aGl~~A~~L~~~-G~~v~viE~~~~ 35 (372)
T PRK05868 3 TVVVSGASVAGTAAAYWLGRH-GYSVTMVERHPG 35 (372)
T ss_pred eEEEECCCHHHHHHHHHHHhC-CCCEEEEcCCCC
Confidence 899999999999999999998 999999999753
No 227
>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [].
Probab=97.55 E-value=0.004 Score=61.75 Aligned_cols=55 Identities=18% Similarity=0.314 Sum_probs=40.6
Q ss_pred hccCCCeEEEeCcEEEEEEEcCC--CCeEEEEEEEeCCeEEE--EEeCcEEEEcCCCcc
Q psy10417 264 IIDRTNLHVIKNSRVVKIIIDPI--SKQAKGVELVKNGHKRS--VFARKEVIVSSGAFN 318 (385)
Q Consensus 264 ~~~~~g~~i~~~~~V~~i~~~~~--~~~v~GV~~~~~g~~~~--i~a~k~VVlAaGa~~ 318 (385)
.++..||++..+|+|+.|.++.. ..+|+++++..+|+..+ +..+..|++.-|++-
T Consensus 216 ~L~~~GV~F~~~t~V~di~~~~~~~~~~~~~i~~~~~g~~~~i~l~~~DlV~vT~GS~t 274 (500)
T PF06100_consen 216 YLKSQGVDFRFNTKVTDIDFDITGDKKTATRIHIEQDGKEETIDLGPDDLVFVTNGSMT 274 (500)
T ss_pred HHHHCCCEEECCCEEEEEEEEccCCCeeEEEEEEEcCCCeeEEEeCCCCEEEEECCccc
Confidence 34578999999999999998643 24578888887765544 445567888877643
No 228
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=97.52 E-value=6.2e-05 Score=75.75 Aligned_cols=37 Identities=16% Similarity=0.347 Sum_probs=31.9
Q ss_pred cEEEECCCchHHHHHhHhhcCC-----CceEEEEecCCCCCc
Q psy10417 25 DFIIVGAGVGGCVVAHRLSEVP-----SWKVLLIEAGDEDRI 61 (385)
Q Consensus 25 DviIVGsG~aG~~~A~~La~~~-----G~~VlvLE~G~~~~~ 61 (385)
+|+|||+|++|+++|++|+++. |.+|+|||+.+....
T Consensus 3 ~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~r~GG 44 (463)
T PRK12416 3 TVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYLGG 44 (463)
T ss_pred eEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecCCCccc
Confidence 5999999999999999999851 479999999887643
No 229
>PLN02676 polyamine oxidase
Probab=97.52 E-value=9e-05 Score=75.04 Aligned_cols=40 Identities=38% Similarity=0.449 Sum_probs=35.2
Q ss_pred CCcccEEEECCCchHHHHHhHhhcCCCc-eEEEEecCCCCCc
Q psy10417 21 LDEYDFIIVGAGVGGCVVAHRLSEVPSW-KVLLIEAGDEDRI 61 (385)
Q Consensus 21 ~~~~DviIVGsG~aG~~~A~~La~~~G~-~VlvLE~G~~~~~ 61 (385)
...+||||||+|++|+++|++|+++ |. +|+|||+.+....
T Consensus 24 ~~~~~v~IIGaG~sGL~aa~~L~~~-g~~~v~vlE~~~~~GG 64 (487)
T PLN02676 24 KPSPSVIIVGAGMSGISAAKTLSEA-GIEDILILEATDRIGG 64 (487)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHc-CCCcEEEecCCCCCCC
Confidence 3468999999999999999999998 98 6999999877643
No 230
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=97.51 E-value=8.7e-05 Score=75.10 Aligned_cols=35 Identities=23% Similarity=0.512 Sum_probs=31.7
Q ss_pred CcccEEEECCCchHHHHHhHhhcCCCceEEEEecC
Q psy10417 22 DEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAG 56 (385)
Q Consensus 22 ~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G 56 (385)
.+||+||||+|++|..+|.++|+..|.+|+|+|++
T Consensus 2 ~~~DviVIG~G~~G~~aA~~aa~~~g~~V~lie~~ 36 (486)
T TIGR01423 2 KAFDLVVIGAGSGGLEAGWNAATLYKKRVAVIDVQ 36 (486)
T ss_pred CccCEEEECCChHHHHHHHHHHHhcCCEEEEEecc
Confidence 47999999999999999999999428999999974
No 231
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=97.48 E-value=8.3e-05 Score=75.96 Aligned_cols=57 Identities=18% Similarity=0.281 Sum_probs=46.5
Q ss_pred CCCeEEEeCcEEEEEEEcCCCCeEEEEEEEe--CCeEEEEEeCcEEEEcCCCcccHHHHHHc
Q psy10417 267 RTNLHVIKNSRVVKIIIDPISKQAKGVELVK--NGHKRSVFARKEVIVSSGAFNSPKLLMLS 326 (385)
Q Consensus 267 ~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~--~g~~~~i~a~k~VVlAaGa~~tp~LL~~S 326 (385)
..|+++++++.|+++.-+ ++++++|++.+ +++..++.++ .|++|.|...++.+|..+
T Consensus 399 ~~gI~i~~~~~v~~i~~~--~g~v~~v~~~~~~~g~~~~i~~D-~v~~~~G~~p~~~~l~~~ 457 (517)
T PRK15317 399 LPNVTIITNAQTTEVTGD--GDKVTGLTYKDRTTGEEHHLELE-GVFVQIGLVPNTEWLKGT 457 (517)
T ss_pred CCCcEEEECcEEEEEEcC--CCcEEEEEEEECCCCcEEEEEcC-EEEEeECCccCchHHhhh
Confidence 469999999999999865 57888888874 4556689996 899999988878877544
No 232
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=97.48 E-value=8.5e-05 Score=75.20 Aligned_cols=33 Identities=33% Similarity=0.677 Sum_probs=31.4
Q ss_pred cccEEEECCCchHHHHHhHhhcCCCceEEEEecC
Q psy10417 23 EYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAG 56 (385)
Q Consensus 23 ~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G 56 (385)
+||+||||+|++|..+|.++++. |.+|+|+|+.
T Consensus 2 ~yDvvVIG~G~aG~~aA~~aa~~-G~~v~lie~~ 34 (484)
T TIGR01438 2 DYDLIVIGGGSGGLAAAKEAADY-GAKVMLLDFV 34 (484)
T ss_pred ccCEEEECCCHHHHHHHHHHHHC-CCeEEEEecc
Confidence 58999999999999999999998 9999999974
No 233
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=97.48 E-value=0.00069 Score=67.76 Aligned_cols=33 Identities=24% Similarity=0.501 Sum_probs=29.4
Q ss_pred cEEEECCCchHHHHHhHhhcC-CCceEEEEecCC
Q psy10417 25 DFIIVGAGVGGCVVAHRLSEV-PSWKVLLIEAGD 57 (385)
Q Consensus 25 DviIVGsG~aG~~~A~~La~~-~G~~VlvLE~G~ 57 (385)
.|||||+|++|+.+|.+|.+. ++.+|+|+|+.+
T Consensus 3 ~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~~ 36 (438)
T PRK13512 3 KIIVVGAVAGGATCASQIRRLDKESDIIIFEKDR 36 (438)
T ss_pred eEEEECCcHHHHHHHHHHHhhCCCCCEEEEECCC
Confidence 699999999999999999874 467999999875
No 234
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=97.47 E-value=9.7e-05 Score=74.14 Aligned_cols=51 Identities=22% Similarity=0.236 Sum_probs=38.8
Q ss_pred hccCCCeEEEeCcEEEEEEEcCCCCeEEEEEEEeC-C-eEEEEEeCcEEEEcCCC
Q psy10417 264 IIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVKN-G-HKRSVFARKEVIVSSGA 316 (385)
Q Consensus 264 ~~~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~~-g-~~~~i~a~k~VVlAaGa 316 (385)
.+++.|.+|++++.|++|..++ +++++||++.++ + +.+++.++ .||+|+..
T Consensus 222 ~l~~~g~~i~l~~~V~~I~~~~-~~~v~~v~~~~~~~~~~~~~~a~-~VI~a~p~ 274 (453)
T TIGR02731 222 YITSRGGEVRLNSRLKEIVLNE-DGSVKHFVLADGEGQRRFEVTAD-AYVSAMPV 274 (453)
T ss_pred HHHhcCCEEeCCCeeEEEEECC-CCCEEEEEEecCCCCceeEEECC-EEEEcCCH
Confidence 3445689999999999998754 567889998754 2 23368885 79999975
No 235
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=97.45 E-value=0.00052 Score=66.22 Aligned_cols=37 Identities=30% Similarity=0.341 Sum_probs=27.1
Q ss_pred CcccEEEECCCchHHHHHhHhhcCCCceEEEEecCCC
Q psy10417 22 DEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDE 58 (385)
Q Consensus 22 ~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~ 58 (385)
+.||+|+||.|++++++|..|.+.+..+++.||+-+.
T Consensus 1 ~~~D~igIG~GP~nLslA~~l~~~~~~~~~f~e~~~~ 37 (341)
T PF13434_consen 1 EIYDLIGIGFGPFNLSLAALLEEHGDLKALFLERRPS 37 (341)
T ss_dssp -EESEEEE--SHHHHHHHHHHHHHH---EEEEES-SS
T ss_pred CceeEEEEeeCHHHHHHHHHhhhcCCCCEEEEecCCC
Confidence 3589999999999999999999974599999998653
No 236
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=97.45 E-value=0.00011 Score=68.38 Aligned_cols=55 Identities=16% Similarity=0.105 Sum_probs=46.4
Q ss_pred hccCCCeEEEeCcEEEEEEEcCCCCeEEEEEEEeCCeEEEEEeCcEEEEcCCCcccHHH
Q psy10417 264 IIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVKNGHKRSVFARKEVIVSSGAFNSPKL 322 (385)
Q Consensus 264 ~~~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~~g~~~~i~a~k~VVlAaGa~~tp~L 322 (385)
..++.|..++.+-+|.+..+. +++++.|.++ ......++|+ .+|||+|+|-|--|
T Consensus 267 ~f~~~Gg~~m~Gd~V~~a~~~--~~~v~~i~tr-n~~diP~~a~-~~VLAsGsffskGL 321 (421)
T COG3075 267 QFEQLGGLWMPGDEVKKATCK--GGRVTEIYTR-NHADIPLRAD-FYVLASGSFFSKGL 321 (421)
T ss_pred HHHHcCceEecCCceeeeeee--CCeEEEEEec-ccccCCCChh-Heeeeccccccccc
Confidence 445789999999999999998 7899999887 4556689995 89999999988765
No 237
>KOG2311|consensus
Probab=97.43 E-value=0.00042 Score=67.60 Aligned_cols=34 Identities=26% Similarity=0.608 Sum_probs=31.2
Q ss_pred CCcccEEEECCCchHHHHHhHhhcCCCceEEEEec
Q psy10417 21 LDEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEA 55 (385)
Q Consensus 21 ~~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~ 55 (385)
...|||||||+|-|||-+|...|+- |.+.++|-.
T Consensus 26 ~~~~dVvVIGgGHAG~EAAaAaaR~-Ga~TlLlT~ 59 (679)
T KOG2311|consen 26 TSTYDVVVIGGGHAGCEAAAAAARL-GARTLLLTH 59 (679)
T ss_pred CCcccEEEECCCccchHHHHHHHhc-CCceEEeec
Confidence 6789999999999999999999998 999999865
No 238
>PRK06475 salicylate hydroxylase; Provisional
Probab=97.42 E-value=0.00012 Score=72.25 Aligned_cols=32 Identities=38% Similarity=0.615 Sum_probs=30.3
Q ss_pred cEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417 25 DFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD 57 (385)
Q Consensus 25 DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~ 57 (385)
+|+|||+|++|+++|..|+++ |++|+|+|+.+
T Consensus 4 ~V~IvGgGiaGl~~A~~L~~~-G~~V~i~E~~~ 35 (400)
T PRK06475 4 SPLIAGAGVAGLSAALELAAR-GWAVTIIEKAQ 35 (400)
T ss_pred cEEEECCCHHHHHHHHHHHhC-CCcEEEEecCC
Confidence 699999999999999999998 99999999865
No 239
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=97.41 E-value=0.00012 Score=74.84 Aligned_cols=56 Identities=16% Similarity=0.308 Sum_probs=44.8
Q ss_pred CCCeEEEeCcEEEEEEEcCCCCeEEEEEEEe--CCeEEEEEeCcEEEEcCCCcccHHHHHH
Q psy10417 267 RTNLHVIKNSRVVKIIIDPISKQAKGVELVK--NGHKRSVFARKEVIVSSGAFNSPKLLML 325 (385)
Q Consensus 267 ~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~--~g~~~~i~a~k~VVlAaGa~~tp~LL~~ 325 (385)
+.|++|++++.|+++.-+ ++++++|.+.+ +++..++.++ .||+|.|...+..+|..
T Consensus 400 ~~gV~i~~~~~v~~i~~~--~~~v~~v~~~~~~~~~~~~i~~D-~vi~a~G~~Pn~~~l~~ 457 (515)
T TIGR03140 400 LPNVDILTSAQTTEIVGD--GDKVTGIRYQDRNSGEEKQLDLD-GVFVQIGLVPNTEWLKD 457 (515)
T ss_pred CCCCEEEECCeeEEEEcC--CCEEEEEEEEECCCCcEEEEEcC-EEEEEeCCcCCchHHhh
Confidence 369999999999999755 57888888875 2555689996 89999998887777653
No 240
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=97.41 E-value=0.00014 Score=78.65 Aligned_cols=37 Identities=19% Similarity=0.296 Sum_probs=33.7
Q ss_pred CcccEEEECCCchHHHHHhHhhcCCCceEEEEecCCCC
Q psy10417 22 DEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDED 59 (385)
Q Consensus 22 ~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~ 59 (385)
...||+|||||+||+++|+.|++. |++|+|+|+.+..
T Consensus 536 ~~kkVaIIGGGPAGLSAA~~LAr~-G~~VTV~Ek~~~l 572 (1012)
T TIGR03315 536 SAHKVAVIGAGPAGLSAGYFLARA-GHPVTVFEKKEKP 572 (1012)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHC-CCeEEEEeccccc
Confidence 457999999999999999999998 9999999997654
No 241
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=97.37 E-value=0.00019 Score=72.08 Aligned_cols=50 Identities=20% Similarity=0.304 Sum_probs=35.0
Q ss_pred CCCeEEEeCcEEEEEEEcCCCCeEEEEEEEeCCeEEEEEeCcEEEEcCCCcccHHHH
Q psy10417 267 RTNLHVIKNSRVVKIIIDPISKQAKGVELVKNGHKRSVFARKEVIVSSGAFNSPKLL 323 (385)
Q Consensus 267 ~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~~g~~~~i~a~k~VVlAaGa~~tp~LL 323 (385)
+.++++++++.|+++..+ ++.+ .|.+. +|+ ++.++ .|++|+|.-.+..+|
T Consensus 221 ~~gI~i~~~~~V~~i~~~--~~~v-~v~~~-~g~--~i~~D-~vl~a~G~~pn~~~l 270 (452)
T TIGR03452 221 KKKWDIRLGRNVTAVEQD--GDGV-TLTLD-DGS--TVTAD-VLLVATGRVPNGDLL 270 (452)
T ss_pred hcCCEEEeCCEEEEEEEc--CCeE-EEEEc-CCC--EEEcC-EEEEeeccCcCCCCc
Confidence 358999999999999865 3332 23332 343 68886 799999977666553
No 242
>PRK12831 putative oxidoreductase; Provisional
Probab=97.36 E-value=0.0002 Score=72.08 Aligned_cols=38 Identities=24% Similarity=0.387 Sum_probs=34.1
Q ss_pred CCcccEEEECCCchHHHHHhHhhcCCCceEEEEecCCCC
Q psy10417 21 LDEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDED 59 (385)
Q Consensus 21 ~~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~ 59 (385)
....||+|||+|++|+++|.+|++. |++|+|+|+.+..
T Consensus 138 ~~~~~V~IIG~GpAGl~aA~~l~~~-G~~V~v~e~~~~~ 175 (464)
T PRK12831 138 KKGKKVAVIGSGPAGLTCAGDLAKM-GYDVTIFEALHEP 175 (464)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHhC-CCeEEEEecCCCC
Confidence 4568999999999999999999998 9999999986543
No 243
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=97.33 E-value=0.00017 Score=71.29 Aligned_cols=36 Identities=33% Similarity=0.451 Sum_probs=32.5
Q ss_pred cEEEECCCchHHHHHhHhhcCCC--ceEEEEecCCCCCc
Q psy10417 25 DFIIVGAGVGGCVVAHRLSEVPS--WKVLLIEAGDEDRI 61 (385)
Q Consensus 25 DviIVGsG~aG~~~A~~La~~~G--~~VlvLE~G~~~~~ 61 (385)
-++|||||++||++|++|.++ + ..|+|+|++++...
T Consensus 2 ~i~IiG~GiaGLsaAy~L~k~-~p~~~i~lfE~~~r~GG 39 (444)
T COG1232 2 KIAIIGGGIAGLSAAYRLQKA-GPDVEVTLFEADDRVGG 39 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHh-CCCCcEEEEecCCCCCc
Confidence 379999999999999999998 7 99999999877643
No 244
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=97.32 E-value=0.00018 Score=78.91 Aligned_cols=62 Identities=19% Similarity=0.187 Sum_probs=48.3
Q ss_pred hccCCCeEEEeCcEEEEEEEcCCCCeEEEEEEEe-CCeEEEEEeCcEEEEcCCCcccHHHHHHcCCC
Q psy10417 264 IIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVK-NGHKRSVFARKEVIVSSGAFNSPKLLMLSGVG 329 (385)
Q Consensus 264 ~~~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~-~g~~~~i~a~k~VVlAaGa~~tp~LL~~Sgig 329 (385)
.+++.|++|++++.|+++.-+ +++.+|++.. ++...++.++ .|+++.|...+..|+...|..
T Consensus 360 ~L~~~GV~i~~~~~v~~i~g~---~~v~~V~l~~~~g~~~~i~~D-~V~va~G~~Pnt~L~~~lg~~ 422 (985)
T TIGR01372 360 EARELGIEVLTGHVVAATEGG---KRVSGVAVARNGGAGQRLEAD-ALAVSGGWTPVVHLFSQRGGK 422 (985)
T ss_pred HHHHcCCEEEcCCeEEEEecC---CcEEEEEEEecCCceEEEECC-EEEEcCCcCchhHHHHhcCCC
Confidence 455779999999999998643 5677888774 3455679996 899999998888888777643
No 245
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=97.31 E-value=0.00019 Score=70.87 Aligned_cols=34 Identities=26% Similarity=0.432 Sum_probs=31.4
Q ss_pred ccEEEECCCchHHHHHhHhhcCCCceEEEEecCCC
Q psy10417 24 YDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDE 58 (385)
Q Consensus 24 ~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~ 58 (385)
.||+|||+|.+|+.+|..||+. |.+|+|+|+.+.
T Consensus 1 ~~VvVIGgGlAGleaA~~LAr~-G~~V~LiE~rp~ 34 (433)
T TIGR00137 1 TPVHVIGGGLAGSEAAWQLAQA-GVPVILYEMRPE 34 (433)
T ss_pred CCEEEECCCHHHHHHHHHHHhC-CCcEEEEecccc
Confidence 3899999999999999999998 999999998664
No 246
>KOG2614|consensus
Probab=97.30 E-value=0.00021 Score=68.78 Aligned_cols=35 Identities=29% Similarity=0.484 Sum_probs=31.7
Q ss_pred cccEEEECCCchHHHHHhHhhcCCCceEEEEecCCC
Q psy10417 23 EYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDE 58 (385)
Q Consensus 23 ~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~ 58 (385)
+-+|||||||++|+++|.-|.+. |++|+|+|+...
T Consensus 2 ~~~VvIvGgGI~Gla~A~~l~r~-G~~v~VlE~~e~ 36 (420)
T KOG2614|consen 2 EPKVVIVGGGIVGLATALALHRK-GIDVVVLESRED 36 (420)
T ss_pred CCcEEEECCcHHHHHHHHHHHHc-CCeEEEEeeccc
Confidence 45899999999999999999998 999999998543
No 247
>PRK07846 mycothione reductase; Reviewed
Probab=97.29 E-value=0.00024 Score=71.29 Aligned_cols=50 Identities=24% Similarity=0.297 Sum_probs=35.6
Q ss_pred CCCeEEEeCcEEEEEEEcCCCCeEEEEEEEeCCeEEEEEeCcEEEEcCCCcccHHHH
Q psy10417 267 RTNLHVIKNSRVVKIIIDPISKQAKGVELVKNGHKRSVFARKEVIVSSGAFNSPKLL 323 (385)
Q Consensus 267 ~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~~g~~~~i~a~k~VVlAaGa~~tp~LL 323 (385)
+.++++++++.|+++..+ ++.+ .|.+. +++ ++.++ .||+|+|...+..+|
T Consensus 218 ~~~v~i~~~~~v~~i~~~--~~~v-~v~~~-~g~--~i~~D-~vl~a~G~~pn~~~l 267 (451)
T PRK07846 218 SKRWDVRLGRNVVGVSQD--GSGV-TLRLD-DGS--TVEAD-VLLVATGRVPNGDLL 267 (451)
T ss_pred hcCeEEEeCCEEEEEEEc--CCEE-EEEEC-CCc--EeecC-EEEEEECCccCcccc
Confidence 457999999999999765 3332 23332 333 68896 799999987777664
No 248
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=97.28 E-value=0.00022 Score=70.70 Aligned_cols=33 Identities=33% Similarity=0.515 Sum_probs=30.0
Q ss_pred cEEEECCCchHHHHHhHhhcCCC-ceEEEEecCCC
Q psy10417 25 DFIIVGAGVGGCVVAHRLSEVPS-WKVLLIEAGDE 58 (385)
Q Consensus 25 DviIVGsG~aG~~~A~~La~~~G-~~VlvLE~G~~ 58 (385)
.|+|||+|++|+++|..|+++ | .+|+|+||.+.
T Consensus 2 ~V~IiGgGiaGla~A~~L~~~-g~~~v~v~Er~~~ 35 (414)
T TIGR03219 2 RVAIIGGGIAGVALALNLCKH-SHLNVQLFEAAPA 35 (414)
T ss_pred eEEEECCCHHHHHHHHHHHhc-CCCCEEEEecCCc
Confidence 589999999999999999998 7 69999999653
No 249
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=97.28 E-value=0.00037 Score=52.14 Aligned_cols=33 Identities=33% Similarity=0.501 Sum_probs=30.8
Q ss_pred EEEECCCchHHHHHhHhhcCCCceEEEEecCCCC
Q psy10417 26 FIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDED 59 (385)
Q Consensus 26 viIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~ 59 (385)
++|||+|..|+-+|..|++. |.+|+|+|+.+..
T Consensus 2 vvViGgG~ig~E~A~~l~~~-g~~vtli~~~~~~ 34 (80)
T PF00070_consen 2 VVVIGGGFIGIELAEALAEL-GKEVTLIERSDRL 34 (80)
T ss_dssp EEEESSSHHHHHHHHHHHHT-TSEEEEEESSSSS
T ss_pred EEEECcCHHHHHHHHHHHHh-CcEEEEEeccchh
Confidence 79999999999999999998 9999999998754
No 250
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=97.27 E-value=0.011 Score=57.89 Aligned_cols=57 Identities=28% Similarity=0.437 Sum_probs=41.2
Q ss_pred hhhhhccCCCeEEEeCcEEEEEEEcCCCCeEEEEEEEeCCeEEEEEeCcEEEEcCCCcccHHHHHH-cC
Q psy10417 260 YLKPIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVKNGHKRSVFARKEVIVSSGAFNSPKLLML-SG 327 (385)
Q Consensus 260 ~l~~~~~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~~g~~~~i~a~k~VVlAaGa~~tp~LL~~-Sg 327 (385)
+....+++.|++|++++.|+++.-+ +|.+.++++ +|.++ .||-|||.=.+| ++.. +|
T Consensus 214 ~a~~~L~~~GV~v~l~~~Vt~v~~~-------~v~~~~g~~--~I~~~-tvvWaaGv~a~~-~~~~l~~ 271 (405)
T COG1252 214 YAERALEKLGVEVLLGTPVTEVTPD-------GVTLKDGEE--EIPAD-TVVWAAGVRASP-LLKDLSG 271 (405)
T ss_pred HHHHHHHHCCCEEEcCCceEEECCC-------cEEEccCCe--eEecC-EEEEcCCCcCCh-hhhhcCh
Confidence 4444566789999999999999765 466666543 69995 899999965444 4444 44
No 251
>PLN02612 phytoene desaturase
Probab=97.27 E-value=0.00031 Score=72.56 Aligned_cols=39 Identities=31% Similarity=0.438 Sum_probs=34.8
Q ss_pred CCcccEEEECCCchHHHHHhHhhcCCCceEEEEecCCCCC
Q psy10417 21 LDEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDEDR 60 (385)
Q Consensus 21 ~~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~~ 60 (385)
....+|+|||+|++|+++|++|+++ |++|+|+|+.+...
T Consensus 91 ~~~~~v~iiG~G~~Gl~~a~~l~~~-g~~~~~~e~~~~~g 129 (567)
T PLN02612 91 AKPLKVVIAGAGLAGLSTAKYLADA-GHKPILLEARDVLG 129 (567)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHhc-CCeEEEEecCCCCC
Confidence 4457999999999999999999998 99999999976653
No 252
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=97.24 E-value=0.0003 Score=68.80 Aligned_cols=36 Identities=28% Similarity=0.518 Sum_probs=33.5
Q ss_pred ccEEEECCCchHHHHHhHhhcCCCceEEEEecCCCCC
Q psy10417 24 YDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDEDR 60 (385)
Q Consensus 24 ~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~~ 60 (385)
-+++|||+|++|+.+|.+||+. |.+|.++|+.+...
T Consensus 125 ~svLVIGGGvAGitAAl~La~~-G~~v~LVEKepsiG 160 (622)
T COG1148 125 KSVLVIGGGVAGITAALELADM-GFKVYLVEKEPSIG 160 (622)
T ss_pred cceEEEcCcHHHHHHHHHHHHc-CCeEEEEecCCccc
Confidence 4799999999999999999999 99999999988764
No 253
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=97.23 E-value=0.00034 Score=70.66 Aligned_cols=38 Identities=26% Similarity=0.369 Sum_probs=34.3
Q ss_pred CCcccEEEECCCchHHHHHhHhhcCCCceEEEEecCCCC
Q psy10417 21 LDEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDED 59 (385)
Q Consensus 21 ~~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~ 59 (385)
....+|+|||+|++|+++|..|++. |++|+|+|+.+..
T Consensus 141 ~~~~~VvIIGaGpAGl~aA~~l~~~-G~~V~vie~~~~~ 178 (471)
T PRK12810 141 RTGKKVAVVGSGPAGLAAADQLARA-GHKVTVFERADRI 178 (471)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHhC-CCcEEEEecCCCC
Confidence 3457999999999999999999998 9999999998654
No 254
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=97.22 E-value=0.00027 Score=76.79 Aligned_cols=38 Identities=24% Similarity=0.235 Sum_probs=34.1
Q ss_pred CcccEEEECCCchHHHHHhHhhcCCCceEEEEecCCCCC
Q psy10417 22 DEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDEDR 60 (385)
Q Consensus 22 ~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~~ 60 (385)
...+|+|||||+||+++|++|+++ |++|+|+|+.+...
T Consensus 305 ~gkkVaVIGsGPAGLsaA~~Lar~-G~~VtVfE~~~~~G 342 (944)
T PRK12779 305 VKPPIAVVGSGPSGLINAYLLAVE-GFPVTVFEAFHDLG 342 (944)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHC-CCeEEEEeeCCCCC
Confidence 357899999999999999999998 99999999976543
No 255
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=97.21 E-value=0.00035 Score=70.10 Aligned_cols=38 Identities=24% Similarity=0.333 Sum_probs=34.1
Q ss_pred CCcccEEEECCCchHHHHHhHhhcCCCceEEEEecCCCC
Q psy10417 21 LDEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDED 59 (385)
Q Consensus 21 ~~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~ 59 (385)
...+||+|||+|++|+++|..|++. |++|+|+|+.+..
T Consensus 131 ~~~~~V~IIG~G~aGl~aA~~l~~~-G~~V~vie~~~~~ 168 (449)
T TIGR01316 131 STHKKVAVIGAGPAGLACASELAKA-GHSVTVFEALHKP 168 (449)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHC-CCcEEEEecCCCC
Confidence 3568999999999999999999998 9999999997543
No 256
>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function. This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....
Probab=97.21 E-value=0.00032 Score=69.39 Aligned_cols=41 Identities=37% Similarity=0.477 Sum_probs=31.9
Q ss_pred CCCcccEEEECCCchHHHHHhHhhcCCCceEEEEecCCCCCc
Q psy10417 20 LLDEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDEDRI 61 (385)
Q Consensus 20 ~~~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~~~ 61 (385)
|+++|||||+|.|..-+.+|..|+.+ |++||.||+.++.+.
T Consensus 1 m~~~yDviI~GTGl~esila~als~~-GkkVLhiD~n~yYGg 41 (438)
T PF00996_consen 1 MDEEYDVIILGTGLTESILAAALSRS-GKKVLHIDRNDYYGG 41 (438)
T ss_dssp --SBESEEEE--SHHHHHHHHHHHHT-T--EEEE-SSSSSCG
T ss_pred CCccceEEEECCCcHHHHHHHHHHhc-CCEEEecCCCCCcCC
Confidence 57899999999999999999999998 999999999998753
No 257
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=97.21 E-value=0.00029 Score=70.91 Aligned_cols=34 Identities=26% Similarity=0.454 Sum_probs=31.4
Q ss_pred cEEEECCCchHHHHHhHhhcCCCceEEEEecCCCC
Q psy10417 25 DFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDED 59 (385)
Q Consensus 25 DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~ 59 (385)
++||||+|++|.++|.+|++. |++|+|+|++...
T Consensus 2 ~vvVIG~G~aG~~aA~~~~~~-g~~V~lie~~~~G 35 (458)
T PRK06912 2 KLVVIGGGPAGYVAAITAAQN-GKNVTLIDEADLG 35 (458)
T ss_pred eEEEECCCHHHHHHHHHHHhC-CCcEEEEECCccc
Confidence 799999999999999999998 9999999997543
No 258
>PLN02529 lysine-specific histone demethylase 1
Probab=97.18 E-value=0.00035 Score=73.58 Aligned_cols=39 Identities=33% Similarity=0.497 Sum_probs=35.0
Q ss_pred CCcccEEEECCCchHHHHHhHhhcCCCceEEEEecCCCCC
Q psy10417 21 LDEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDEDR 60 (385)
Q Consensus 21 ~~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~~ 60 (385)
..+.||+|||+|++|+++|..|+++ |++|+|+|+.+...
T Consensus 158 ~~~~~v~viGaG~aGl~aA~~l~~~-g~~v~v~E~~~~~G 196 (738)
T PLN02529 158 GTEGSVIIVGAGLAGLAAARQLLSF-GFKVVVLEGRNRPG 196 (738)
T ss_pred cCCCCEEEECcCHHHHHHHHHHHHc-CCcEEEEecCccCc
Confidence 3467999999999999999999998 99999999977654
No 259
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=97.17 E-value=0.00044 Score=73.29 Aligned_cols=39 Identities=28% Similarity=0.572 Sum_probs=35.1
Q ss_pred CCcccEEEECCCchHHHHHhHhhcCCCceEEEEecCCCCC
Q psy10417 21 LDEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDEDR 60 (385)
Q Consensus 21 ~~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~~ 60 (385)
....+|+|||+|++|+++|+.|++. |++|+|+|+.....
T Consensus 236 ~~~~~v~IiGaG~aGl~aA~~L~~~-g~~v~v~E~~~r~G 274 (808)
T PLN02328 236 VEPANVVVVGAGLAGLVAARQLLSM-GFKVVVLEGRARPG 274 (808)
T ss_pred CCCCCEEEECcCHHHHHHHHHHHHC-CCcEEEEeccccCC
Confidence 4568999999999999999999998 99999999977653
No 260
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=97.13 E-value=0.00044 Score=69.75 Aligned_cols=32 Identities=28% Similarity=0.459 Sum_probs=30.5
Q ss_pred cEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417 25 DFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD 57 (385)
Q Consensus 25 DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~ 57 (385)
|+||||+|++|+.+|..|++. |.+|+|+|++.
T Consensus 3 ~vvviG~G~~G~~~a~~~~~~-g~~v~~~e~~~ 34 (466)
T PRK07845 3 RIVIIGGGPGGYEAALVAAQL-GADVTVIERDG 34 (466)
T ss_pred cEEEECCCHHHHHHHHHHHhC-CCeEEEEEccC
Confidence 799999999999999999998 99999999864
No 261
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=97.11 E-value=0.00041 Score=76.04 Aligned_cols=37 Identities=24% Similarity=0.172 Sum_probs=33.8
Q ss_pred CcccEEEECCCchHHHHHhHhhcCCCceEEEEecCCCC
Q psy10417 22 DEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDED 59 (385)
Q Consensus 22 ~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~ 59 (385)
...+|+|||||++|+++|.+|++. |++|+|+|+.+..
T Consensus 429 ~~~kVaIIG~GPAGLsaA~~La~~-G~~VtV~E~~~~~ 465 (1006)
T PRK12775 429 KLGKVAICGSGPAGLAAAADLVKY-GVDVTVYEALHVV 465 (1006)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHc-CCcEEEEecCCCC
Confidence 357999999999999999999998 9999999998654
No 262
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=97.10 E-value=0.00047 Score=72.48 Aligned_cols=37 Identities=24% Similarity=0.283 Sum_probs=33.7
Q ss_pred CcccEEEECCCchHHHHHhHhhcCCCceEEEEecCCCC
Q psy10417 22 DEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDED 59 (385)
Q Consensus 22 ~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~ 59 (385)
...+|+|||||++|+++|..|++. |++|+|+|+.+..
T Consensus 326 ~~~~VaIIGaGpAGLsaA~~L~~~-G~~V~V~E~~~~~ 362 (654)
T PRK12769 326 SDKRVAIIGAGPAGLACADVLARN-GVAVTVYDRHPEI 362 (654)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC-CCeEEEEecCCCC
Confidence 457999999999999999999998 9999999997654
No 263
>PLN02852 ferredoxin-NADP+ reductase
Probab=97.09 E-value=0.00065 Score=68.49 Aligned_cols=41 Identities=22% Similarity=0.270 Sum_probs=34.5
Q ss_pred CCCCcccEEEECCCchHHHHHhHhhcC-CCceEEEEecCCCC
Q psy10417 19 RLLDEYDFIIVGAGVGGCVVAHRLSEV-PSWKVLLIEAGDED 59 (385)
Q Consensus 19 ~~~~~~DviIVGsG~aG~~~A~~La~~-~G~~VlvLE~G~~~ 59 (385)
.......|+|||||+||+.+|..|+++ .|++|+|+|+-+..
T Consensus 22 ~~~~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~p 63 (491)
T PLN02852 22 STSEPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTP 63 (491)
T ss_pred CCCCCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCC
Confidence 334467899999999999999999872 39999999998754
No 264
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=97.06 E-value=0.0068 Score=59.30 Aligned_cols=57 Identities=18% Similarity=0.229 Sum_probs=41.2
Q ss_pred cCCCeEEEeCcEEEEEEEcCCCCeEEEEEEEeCCeEEEEEeCcEEEEcCCCcccHHHHHHcCCC
Q psy10417 266 DRTNLHVIKNSRVVKIIIDPISKQAKGVELVKNGHKRSVFARKEVIVSSGAFNSPKLLMLSGVG 329 (385)
Q Consensus 266 ~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~~g~~~~i~a~k~VVlAaGa~~tp~LL~~Sgig 329 (385)
++.|+++++++.|+++..+ ++. ..|.+.+ |+ ++.++ .||+|+|.-.+..++..+|+.
T Consensus 194 ~~~gV~i~~~~~v~~i~~~--~~~-~~v~~~~-g~--~i~~D-~vI~a~G~~p~~~l~~~~gl~ 250 (377)
T PRK04965 194 TEMGVHLLLKSQLQGLEKT--DSG-IRATLDS-GR--SIEVD-AVIAAAGLRPNTALARRAGLA 250 (377)
T ss_pred HhCCCEEEECCeEEEEEcc--CCE-EEEEEcC-Cc--EEECC-EEEECcCCCcchHHHHHCCCC
Confidence 3468999999999999765 333 2344433 32 68896 899999987777888877764
No 265
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=97.04 E-value=0.00059 Score=72.93 Aligned_cols=37 Identities=24% Similarity=0.370 Sum_probs=33.3
Q ss_pred CCcccEEEECCCchHHHHHhHhhcCCCceEEEEecCCC
Q psy10417 21 LDEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDE 58 (385)
Q Consensus 21 ~~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~ 58 (385)
....||+|||||+||+++|..|++. |++|+|+|+.+.
T Consensus 429 ~~~~~V~IIGaGpAGl~aA~~l~~~-G~~V~v~e~~~~ 465 (752)
T PRK12778 429 KNGKKVAVIGSGPAGLSFAGDLAKR-GYDVTVFEALHE 465 (752)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHC-CCeEEEEecCCC
Confidence 3467999999999999999999998 999999998653
No 266
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=97.04 E-value=0.00053 Score=74.10 Aligned_cols=37 Identities=22% Similarity=0.329 Sum_probs=33.4
Q ss_pred CcccEEEECCCchHHHHHhHhhcCCCceEEEEecCCCC
Q psy10417 22 DEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDED 59 (385)
Q Consensus 22 ~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~ 59 (385)
..-+|+|||||+||+++|+.|++. |++|+|+|+.+..
T Consensus 538 tgKkVaIIGgGPAGLsAA~~Lar~-G~~VtV~Ek~~~~ 574 (1019)
T PRK09853 538 SRKKVAVIGAGPAGLAAAYFLARA-GHPVTVFEREENA 574 (1019)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHc-CCeEEEEeccccc
Confidence 356999999999999999999998 9999999987654
No 267
>KOG0685|consensus
Probab=97.03 E-value=0.00066 Score=66.38 Aligned_cols=42 Identities=33% Similarity=0.392 Sum_probs=35.9
Q ss_pred CCcccEEEECCCchHHHHHhHhhcCCCceEEEEecCCCCCcc
Q psy10417 21 LDEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDEDRIF 62 (385)
Q Consensus 21 ~~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~~~~ 62 (385)
....-+||||+|++|++||.+|-++.+..|+|+|+.+.+...
T Consensus 19 ~~~~kIvIIGAG~AGLaAA~rLle~gf~~~~IlEa~dRIGGR 60 (498)
T KOG0685|consen 19 RGNAKIVIIGAGIAGLAAATRLLENGFIDVLILEASDRIGGR 60 (498)
T ss_pred cCCceEEEECCchHHHHHHHHHHHhCCceEEEEEeccccCce
Confidence 445589999999999999999998757799999998887543
No 268
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=97.03 E-value=0.00061 Score=68.52 Aligned_cols=37 Identities=32% Similarity=0.550 Sum_probs=33.7
Q ss_pred CcccEEEECCCchHHHHHhHhhcCCCceEEEEecCCCC
Q psy10417 22 DEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDED 59 (385)
Q Consensus 22 ~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~ 59 (385)
...+|+|||+|++|+.+|..|++. |++|+|+|+.+..
T Consensus 139 ~~~~VvIIGgGpaGl~aA~~l~~~-g~~V~lie~~~~~ 175 (457)
T PRK11749 139 TGKKVAVIGAGPAGLTAAHRLARK-GYDVTIFEARDKA 175 (457)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhC-CCeEEEEccCCCC
Confidence 357999999999999999999998 9999999998654
No 269
>KOG4716|consensus
Probab=96.99 E-value=0.00061 Score=63.77 Aligned_cols=34 Identities=29% Similarity=0.576 Sum_probs=31.7
Q ss_pred CCcccEEEECCCchHHHHHhHhhcCCCceEEEEec
Q psy10417 21 LDEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEA 55 (385)
Q Consensus 21 ~~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~ 55 (385)
.-+||.||||+|.+|++||.+.|.- |.+|.+||-
T Consensus 17 sydyDLIviGgGSgGLacaKeAa~~-G~kV~~lDf 50 (503)
T KOG4716|consen 17 SYDYDLIVIGGGSGGLACAKEAADL-GAKVACLDF 50 (503)
T ss_pred cCCccEEEEcCCcchhhHHHHHHhc-CCcEEEEee
Confidence 4579999999999999999999998 999999984
No 270
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=96.92 E-value=0.00098 Score=62.73 Aligned_cols=39 Identities=26% Similarity=0.279 Sum_probs=34.1
Q ss_pred CCcccEEEECCCchHHHHHhHhhcCCCceEEEEecCCCCCc
Q psy10417 21 LDEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDEDRI 61 (385)
Q Consensus 21 ~~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~~~ 61 (385)
....++.|||+|++|+++|+.|++. .+|+++|++.....
T Consensus 6 ~~r~~IAVIGsGisGLSAA~~Ls~r--hdVTLfEA~~rlGG 44 (447)
T COG2907 6 HPRRKIAVIGSGISGLSAAWLLSRR--HDVTLFEADRRLGG 44 (447)
T ss_pred CCCcceEEEcccchhhhhHHhhhcc--cceEEEeccccccC
Confidence 3456899999999999999999995 69999999988753
No 271
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=96.87 E-value=0.00083 Score=71.84 Aligned_cols=34 Identities=21% Similarity=0.405 Sum_probs=31.0
Q ss_pred cEEEECCCchHHHHHhHhhcC-CCceEEEEecCCC
Q psy10417 25 DFIIVGAGVGGCVVAHRLSEV-PSWKVLLIEAGDE 58 (385)
Q Consensus 25 DviIVGsG~aG~~~A~~La~~-~G~~VlvLE~G~~ 58 (385)
+|+|||+|++|+++|..|+++ +|++|+|+|+...
T Consensus 2 ~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~ 36 (765)
T PRK08255 2 RIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRP 36 (765)
T ss_pred eEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCC
Confidence 699999999999999999986 4899999999875
No 272
>PTZ00188 adrenodoxin reductase; Provisional
Probab=96.86 E-value=0.0014 Score=65.47 Aligned_cols=51 Identities=20% Similarity=0.243 Sum_probs=37.5
Q ss_pred ccchhhhcCCCCCCCcccEEEECCCchHHHHHhHhhcCCCceEEEEecCCCCC
Q psy10417 8 PKREEFLYGNKRLLDEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDEDR 60 (385)
Q Consensus 8 ~~~~~~~~~~~~~~~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~~ 60 (385)
|.+....+.+.. ...-|+|||||++|+.+|.+|+.+.|++|.|+|+-+...
T Consensus 26 ~~~~~~~~~~~~--~~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~pg 76 (506)
T PTZ00188 26 PFTGKCFFTNEA--KPFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNPY 76 (506)
T ss_pred CCCccccCCCCC--CCCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCCc
Confidence 344445454432 345699999999999999987643399999999987653
No 273
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=96.86 E-value=0.011 Score=58.42 Aligned_cols=33 Identities=33% Similarity=0.398 Sum_probs=30.3
Q ss_pred ccEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417 24 YDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD 57 (385)
Q Consensus 24 ~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~ 57 (385)
-.++|||+|..|+-+|..|++. |.+|+|+|+++
T Consensus 145 ~~vvViGgG~ig~E~A~~l~~~-g~~Vtlv~~~~ 177 (396)
T PRK09754 145 RSVVIVGAGTIGLELAASATQR-RCKVTVIELAA 177 (396)
T ss_pred CeEEEECCCHHHHHHHHHHHHc-CCeEEEEecCC
Confidence 3699999999999999999998 99999999864
No 274
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=96.82 E-value=0.016 Score=59.32 Aligned_cols=32 Identities=22% Similarity=0.346 Sum_probs=30.1
Q ss_pred cEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417 25 DFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD 57 (385)
Q Consensus 25 DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~ 57 (385)
+|+|||+|..|+-+|..|+.. +.+|+|+++++
T Consensus 353 ~VvVVGgG~~g~e~A~~L~~~-~~~Vtlv~~~~ 384 (517)
T PRK15317 353 RVAVIGGGNSGVEAAIDLAGI-VKHVTVLEFAP 384 (517)
T ss_pred EEEEECCCHHHHHHHHHHHhc-CCEEEEEEECc
Confidence 799999999999999999998 99999999864
No 275
>KOG3855|consensus
Probab=96.81 E-value=0.0016 Score=62.66 Aligned_cols=40 Identities=43% Similarity=0.635 Sum_probs=33.7
Q ss_pred CCCCcccEEEECCCchHHHHHhHhhcCC---CceEEEEecCCC
Q psy10417 19 RLLDEYDFIIVGAGVGGCVVAHRLSEVP---SWKVLLIEAGDE 58 (385)
Q Consensus 19 ~~~~~~DviIVGsG~aG~~~A~~La~~~---G~~VlvLE~G~~ 58 (385)
.-.+.|||||||||++|.+.|..|..++ -+||+++|.+..
T Consensus 32 ~~~~~~dVvIvGgGpvg~aLAa~l~snp~~~~~kv~Lld~~~s 74 (481)
T KOG3855|consen 32 TDTAKYDVVIVGGGPVGLALAAALGSNPPFQDKKVLLLDAGDS 74 (481)
T ss_pred CCcccCCEEEECCchHHHHHHHHhccCCccchheeeEEecccC
Confidence 3345899999999999999999998752 479999999954
No 276
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=96.80 E-value=0.017 Score=59.02 Aligned_cols=32 Identities=28% Similarity=0.463 Sum_probs=29.8
Q ss_pred cEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417 25 DFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD 57 (385)
Q Consensus 25 DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~ 57 (385)
.++|||+|..|+-+|..|++. |.+|+|+|+++
T Consensus 354 ~VvViGgG~~g~E~A~~L~~~-g~~Vtli~~~~ 385 (515)
T TIGR03140 354 DVAVIGGGNSGIEAAIDLAGI-VRHVTVLEFAD 385 (515)
T ss_pred EEEEECCcHHHHHHHHHHHhc-CcEEEEEEeCC
Confidence 799999999999999999998 99999999764
No 277
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=96.80 E-value=0.01 Score=59.65 Aligned_cols=33 Identities=33% Similarity=0.431 Sum_probs=30.2
Q ss_pred ccEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417 24 YDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD 57 (385)
Q Consensus 24 ~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~ 57 (385)
-+++|||+|.+|+-+|..|++. |.+|+++|+++
T Consensus 171 ~~vvViGgG~~g~e~A~~l~~~-g~~Vtli~~~~ 203 (461)
T TIGR01350 171 ESLVIIGGGVIGIEFASIFASL-GSKVTVIEMLD 203 (461)
T ss_pred CeEEEECCCHHHHHHHHHHHHc-CCcEEEEEcCC
Confidence 3799999999999999999998 99999999864
No 278
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=96.79 E-value=0.0014 Score=68.85 Aligned_cols=37 Identities=24% Similarity=0.349 Sum_probs=33.6
Q ss_pred CcccEEEECCCchHHHHHhHhhcCCCceEEEEecCCCC
Q psy10417 22 DEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDED 59 (385)
Q Consensus 22 ~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~ 59 (385)
...+|+|||+|++|+++|..|++. |++|+|+|+.+..
T Consensus 192 ~~k~VaIIGaGpAGl~aA~~La~~-G~~Vtv~e~~~~~ 228 (652)
T PRK12814 192 SGKKVAIIGAGPAGLTAAYYLLRK-GHDVTIFDANEQA 228 (652)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC-CCcEEEEecCCCC
Confidence 457999999999999999999998 9999999997654
No 279
>KOG2960|consensus
Probab=96.79 E-value=0.00055 Score=60.03 Aligned_cols=34 Identities=41% Similarity=0.611 Sum_probs=31.1
Q ss_pred cccEEEECCCchHHHHHhHhhc-CCCceEEEEecC
Q psy10417 23 EYDFIIVGAGVGGCVVAHRLSE-VPSWKVLLIEAG 56 (385)
Q Consensus 23 ~~DviIVGsG~aG~~~A~~La~-~~G~~VlvLE~G 56 (385)
+.||||||+|.+|+++|+..++ +|..+|.+||..
T Consensus 76 esDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~S 110 (328)
T KOG2960|consen 76 ESDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESS 110 (328)
T ss_pred ccceEEECCCccccceeeeeeccCCCceEEEEEee
Confidence 5699999999999999999996 489999999974
No 280
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=96.79 E-value=0.0013 Score=66.24 Aligned_cols=37 Identities=22% Similarity=0.316 Sum_probs=33.7
Q ss_pred CcccEEEECCCchHHHHHhHhhcCCCceEEEEecCCCC
Q psy10417 22 DEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDED 59 (385)
Q Consensus 22 ~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~ 59 (385)
...+|+|||+|++|+++|..|++. |++|+|+|+.+..
T Consensus 140 ~~~~V~IIG~GpaGl~aA~~l~~~-G~~V~i~e~~~~~ 176 (467)
T TIGR01318 140 TGKRVAVIGAGPAGLACADILARA-GVQVVVFDRHPEI 176 (467)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHc-CCeEEEEecCCCC
Confidence 457999999999999999999998 9999999997654
No 281
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=96.79 E-value=0.001 Score=71.38 Aligned_cols=35 Identities=20% Similarity=0.364 Sum_probs=32.2
Q ss_pred CcccEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417 22 DEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD 57 (385)
Q Consensus 22 ~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~ 57 (385)
....|+|||+|+||+++|+.|++. |++|+|+|+..
T Consensus 382 tgKKVaVVGaGPAGLsAA~~La~~-Gh~Vtv~E~~~ 416 (1028)
T PRK06567 382 TNYNILVTGLGPAGFSLSYYLLRS-GHNVTAIDGLK 416 (1028)
T ss_pred CCCeEEEECcCHHHHHHHHHHHhC-CCeEEEEcccc
Confidence 456899999999999999999998 99999999854
No 282
>KOG1335|consensus
Probab=96.78 E-value=0.0012 Score=62.78 Aligned_cols=36 Identities=28% Similarity=0.618 Sum_probs=33.2
Q ss_pred CcccEEEECCCchHHHHHhHhhcCCCceEEEEecCCC
Q psy10417 22 DEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDE 58 (385)
Q Consensus 22 ~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~ 58 (385)
.+||++|||+|++|-++|.+.|+. |++..++|+...
T Consensus 38 ~d~DvvvIG~GpGGyvAAikAaQl-GlkTacvEkr~~ 73 (506)
T KOG1335|consen 38 NDYDVVVIGGGPGGYVAAIKAAQL-GLKTACVEKRGT 73 (506)
T ss_pred ccCCEEEECCCCchHHHHHHHHHh-cceeEEEeccCc
Confidence 579999999999999999999998 999999999543
No 283
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=96.76 E-value=0.0091 Score=60.15 Aligned_cols=33 Identities=18% Similarity=0.420 Sum_probs=30.3
Q ss_pred ccEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417 24 YDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD 57 (385)
Q Consensus 24 ~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~ 57 (385)
-.++|||+|..|+-+|..|++. |.+|+++|+++
T Consensus 167 ~~vvIIGgG~~g~E~A~~l~~~-g~~Vtli~~~~ 199 (463)
T TIGR02053 167 ESLAVIGGGAIGVELAQAFARL-GSEVTILQRSD 199 (463)
T ss_pred CeEEEECCCHHHHHHHHHHHHc-CCcEEEEEcCC
Confidence 4799999999999999999998 99999999864
No 284
>PLN03000 amine oxidase
Probab=96.75 E-value=0.0014 Score=69.76 Aligned_cols=38 Identities=29% Similarity=0.508 Sum_probs=34.7
Q ss_pred CcccEEEECCCchHHHHHhHhhcCCCceEEEEecCCCCC
Q psy10417 22 DEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDEDR 60 (385)
Q Consensus 22 ~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~~ 60 (385)
...||+|||+|++|+.+|+.|++. |++|+|+|+.+...
T Consensus 183 ~~~~VvIIGaG~aGL~aA~~L~~~-G~~V~VlE~~~riG 220 (881)
T PLN03000 183 SKSSVVIVGAGLSGLAAARQLMRF-GFKVTVLEGRKRPG 220 (881)
T ss_pred CCCCEEEECccHHHHHHHHHHHHC-CCcEEEEEccCcCC
Confidence 458999999999999999999998 99999999987664
No 285
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=96.75 E-value=0.0017 Score=62.96 Aligned_cols=38 Identities=24% Similarity=0.301 Sum_probs=34.0
Q ss_pred CcccEEEECCCchHHHHHhHhhcCCCceEEEEecCCCCC
Q psy10417 22 DEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDEDR 60 (385)
Q Consensus 22 ~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~~ 60 (385)
...+|+|||+|++|+.+|..|++. |++|+|+|+.+...
T Consensus 17 ~~~~VvIIG~G~aGl~aA~~l~~~-g~~v~lie~~~~~g 54 (352)
T PRK12770 17 TGKKVAIIGAGPAGLAAAGYLACL-GYEVHVYDKLPEPG 54 (352)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHC-CCcEEEEeCCCCCC
Confidence 345899999999999999999998 99999999987653
No 286
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=96.73 E-value=0.014 Score=58.82 Aligned_cols=59 Identities=19% Similarity=0.267 Sum_probs=40.3
Q ss_pred cCCCeEEEeCcEEEEEEEcCCCCeEEEEEEE-eCCeEEEEEeCcEEEEcCCCcccHHH--HHHcCC
Q psy10417 266 DRTNLHVIKNSRVVKIIIDPISKQAKGVELV-KNGHKRSVFARKEVIVSSGAFNSPKL--LMLSGV 328 (385)
Q Consensus 266 ~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~-~~g~~~~i~a~k~VVlAaGa~~tp~L--L~~Sgi 328 (385)
++.|++|++++.|+++.-+ ++.+ .|.+. .+|+..++.++ .||+|+|...+..+ |..+|+
T Consensus 224 ~~~gV~i~~~~~v~~i~~~--~~~~-~v~~~~~~g~~~~i~~D-~vi~a~G~~pn~~~l~l~~~g~ 285 (466)
T PRK07818 224 KKLGVKILTGTKVESIDDN--GSKV-TVTVSKKDGKAQELEAD-KVLQAIGFAPRVEGYGLEKTGV 285 (466)
T ss_pred HHCCCEEEECCEEEEEEEe--CCeE-EEEEEecCCCeEEEEeC-EEEECcCcccCCCCCCchhcCc
Confidence 3569999999999999754 3333 34444 24555578996 89999997666554 345554
No 287
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=96.72 E-value=0.015 Score=58.17 Aligned_cols=56 Identities=23% Similarity=0.271 Sum_probs=40.7
Q ss_pred cCCCeEEEeCcEEEEEEEcCCCCeEEEEEEEeCCeEEEEEeCcEEEEcCCCcccHHHHHHcCCC
Q psy10417 266 DRTNLHVIKNSRVVKIIIDPISKQAKGVELVKNGHKRSVFARKEVIVSSGAFNSPKLLMLSGVG 329 (385)
Q Consensus 266 ~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~~g~~~~i~a~k~VVlAaGa~~tp~LL~~Sgig 329 (385)
++.|+++++++.|++|..+ +++..+... ++ ++.++ .||+|+|...+..+|..+|+.
T Consensus 202 ~~~gI~v~~~~~v~~i~~~---~~~~~v~~~-~~---~i~~d-~vi~a~G~~p~~~~l~~~gl~ 257 (444)
T PRK09564 202 RENGVELHLNEFVKSLIGE---DKVEGVVTD-KG---EYEAD-VVIVATGVKPNTEFLEDTGLK 257 (444)
T ss_pred HHCCCEEEcCCEEEEEecC---CcEEEEEeC-CC---EEEcC-EEEECcCCCcCHHHHHhcCcc
Confidence 4568999999999999532 445445432 23 58886 899999987777888888764
No 288
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=96.65 E-value=0.002 Score=67.59 Aligned_cols=37 Identities=22% Similarity=0.241 Sum_probs=34.0
Q ss_pred CcccEEEECCCchHHHHHhHhhcCCCceEEEEecCCCC
Q psy10417 22 DEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDED 59 (385)
Q Consensus 22 ~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~ 59 (385)
...+|+|||+|++|+++|+.|++. |++|+|+|+.+..
T Consensus 309 ~~kkVaIIG~GpaGl~aA~~L~~~-G~~Vtv~e~~~~~ 345 (639)
T PRK12809 309 RSEKVAVIGAGPAGLGCADILARA-GVQVDVFDRHPEI 345 (639)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHc-CCcEEEEeCCCCC
Confidence 467899999999999999999998 9999999998754
No 289
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=96.64 E-value=0.014 Score=63.02 Aligned_cols=60 Identities=17% Similarity=0.285 Sum_probs=44.2
Q ss_pred ccCCCeEEEeCcEEEEEEEcCCCCeEEEEEEEeCCeEEEEEeCcEEEEcCCCcccHHHHHHcCCC
Q psy10417 265 IDRTNLHVIKNSRVVKIIIDPISKQAKGVELVKNGHKRSVFARKEVIVSSGAFNSPKLLMLSGVG 329 (385)
Q Consensus 265 ~~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~~g~~~~i~a~k~VVlAaGa~~tp~LL~~Sgig 329 (385)
+++.|++|++++.|++|.-+. .+....|.+.+ |+ .+.++ .||+|+|.-.+..|+..+|+.
T Consensus 197 L~~~GV~v~~~~~v~~I~~~~-~~~~~~v~~~d-G~--~i~~D-~Vv~A~G~rPn~~L~~~~Gl~ 256 (847)
T PRK14989 197 IESMGVRVHTSKNTLEIVQEG-VEARKTMRFAD-GS--ELEVD-FIVFSTGIRPQDKLATQCGLA 256 (847)
T ss_pred HHHCCCEEEcCCeEEEEEecC-CCceEEEEECC-CC--EEEcC-EEEECCCcccCchHHhhcCcc
Confidence 345699999999999997542 23455566654 33 68896 899999988888887777763
No 290
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=96.64 E-value=0.013 Score=62.89 Aligned_cols=58 Identities=16% Similarity=0.301 Sum_probs=43.4
Q ss_pred ccCCCeEEEeCcEEEEEEEcCCCCeEEEEEEEeCCeEEEEEeCcEEEEcCCCcccHHHHHHcCCC
Q psy10417 265 IDRTNLHVIKNSRVVKIIIDPISKQAKGVELVKNGHKRSVFARKEVIVSSGAFNSPKLLMLSGVG 329 (385)
Q Consensus 265 ~~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~~g~~~~i~a~k~VVlAaGa~~tp~LL~~Sgig 329 (385)
+++.|++|++++.|++|.-+ +++.+|.+.++ + ++.++ .||+|+|.-.+..|+..+|+.
T Consensus 192 l~~~GV~v~~~~~v~~i~~~---~~~~~v~~~dG-~--~i~~D-~Vi~a~G~~Pn~~la~~~gl~ 249 (785)
T TIGR02374 192 LEQKGLTFLLEKDTVEIVGA---TKADRIRFKDG-S--SLEAD-LIVMAAGIRPNDELAVSAGIK 249 (785)
T ss_pred HHHcCCEEEeCCceEEEEcC---CceEEEEECCC-C--EEEcC-EEEECCCCCcCcHHHHhcCCc
Confidence 34568999999999998643 45667777653 3 68896 899999987777777777753
No 291
>KOG1276|consensus
Probab=96.63 E-value=0.0028 Score=61.31 Aligned_cols=44 Identities=23% Similarity=0.366 Sum_probs=35.0
Q ss_pred CCCCcccEEEECCCchHHHHHhHhhcC-CCceEEEEecCCCCCcc
Q psy10417 19 RLLDEYDFIIVGAGVGGCVVAHRLSEV-PSWKVLLIEAGDEDRIF 62 (385)
Q Consensus 19 ~~~~~~DviIVGsG~aG~~~A~~La~~-~G~~VlvLE~G~~~~~~ 62 (385)
.+....+|+|||+|++|+++|+.|++. +...|++.|++++....
T Consensus 7 ~~~~~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~RvGGw 51 (491)
T KOG1276|consen 7 EAVSGMTVAVVGGGISGLCAAYYLARLGPDVTITLFEASPRVGGW 51 (491)
T ss_pred cceecceEEEECCchhHHHHHHHHHhcCCCceEEEEecCCcccce
Confidence 445567999999999999999999998 23346779998877543
No 292
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=96.62 E-value=0.0021 Score=65.13 Aligned_cols=36 Identities=25% Similarity=0.373 Sum_probs=33.0
Q ss_pred cccEEEECCCchHHHHHhHhhcCCCceEEEEecCCCC
Q psy10417 23 EYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDED 59 (385)
Q Consensus 23 ~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~ 59 (385)
..+|+|||+|++|+.+|..|++. |++|+|+|+.+..
T Consensus 143 ~~~V~IIGaG~aGl~aA~~L~~~-g~~V~v~e~~~~~ 178 (485)
T TIGR01317 143 GKKVAVVGSGPAGLAAADQLNRA-GHTVTVFEREDRC 178 (485)
T ss_pred CCEEEEECCcHHHHHHHHHHHHc-CCeEEEEecCCCC
Confidence 46999999999999999999998 9999999998754
No 293
>PLN02976 amine oxidase
Probab=96.53 E-value=0.0022 Score=71.03 Aligned_cols=37 Identities=30% Similarity=0.437 Sum_probs=33.6
Q ss_pred cccEEEECCCchHHHHHhHhhcCCCceEEEEecCCCCC
Q psy10417 23 EYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDEDR 60 (385)
Q Consensus 23 ~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~~ 60 (385)
.+||+|||+|++|+++|+.|+++ |++|+|||+.....
T Consensus 693 ~~dV~IIGAG~AGLaAA~~L~~~-G~~V~VlEa~~~vG 729 (1713)
T PLN02976 693 RKKIIVVGAGPAGLTAARHLQRQ-GFSVTVLEARSRIG 729 (1713)
T ss_pred CCcEEEECchHHHHHHHHHHHHC-CCcEEEEeeccCCC
Confidence 58999999999999999999998 99999999976553
No 294
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=96.49 E-value=0.032 Score=56.04 Aligned_cols=31 Identities=13% Similarity=0.164 Sum_probs=29.1
Q ss_pred cEEEECCCchHHHHHhHhhcCCCceEEEEecC
Q psy10417 25 DFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAG 56 (385)
Q Consensus 25 DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G 56 (385)
.|+|||+|..|+-+|..|++. |.+|+|+++.
T Consensus 274 ~VvVIGgG~~a~d~A~~l~~~-G~~Vtlv~~~ 304 (449)
T TIGR01316 274 SVVVIGGGNTAVDSARTALRL-GAEVHCLYRR 304 (449)
T ss_pred eEEEECCCHHHHHHHHHHHHc-CCEEEEEeec
Confidence 799999999999999999998 9999999875
No 295
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=96.38 E-value=0.0031 Score=65.16 Aligned_cols=38 Identities=24% Similarity=0.315 Sum_probs=33.6
Q ss_pred CCcccEEEECCCchHHHHHhHhhcCCCceEEEEecCCCC
Q psy10417 21 LDEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDED 59 (385)
Q Consensus 21 ~~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~ 59 (385)
...-+|+|||+|++|+++|..|++. |.+|+|+|+.+..
T Consensus 135 ~~g~~V~VIGaGpaGL~aA~~l~~~-G~~V~v~e~~~~~ 172 (564)
T PRK12771 135 DTGKRVAVIGGGPAGLSAAYHLRRM-GHAVTIFEAGPKL 172 (564)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHC-CCeEEEEecCCCC
Confidence 3456899999999999999999998 9999999987654
No 296
>PRK10262 thioredoxin reductase; Provisional
Probab=96.37 E-value=0.066 Score=51.05 Aligned_cols=32 Identities=28% Similarity=0.355 Sum_probs=29.9
Q ss_pred cEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417 25 DFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD 57 (385)
Q Consensus 25 DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~ 57 (385)
.++|||+|..|+-+|..|++. |.+|+++++.+
T Consensus 148 ~vvVvGgG~~g~e~A~~l~~~-~~~Vtlv~~~~ 179 (321)
T PRK10262 148 KVAVIGGGNTAVEEALYLSNI-ASEVHLIHRRD 179 (321)
T ss_pred EEEEECCCHHHHHHHHHHHhh-CCEEEEEEECC
Confidence 789999999999999999998 99999999864
No 297
>PRK13984 putative oxidoreductase; Provisional
Probab=96.35 E-value=0.0041 Score=64.83 Aligned_cols=38 Identities=24% Similarity=0.312 Sum_probs=34.3
Q ss_pred CCcccEEEECCCchHHHHHhHhhcCCCceEEEEecCCCC
Q psy10417 21 LDEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDED 59 (385)
Q Consensus 21 ~~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~ 59 (385)
....+|+|||+|++|+++|..|++. |++|+|+|+.+..
T Consensus 281 ~~~~~v~IIGaG~aGl~aA~~L~~~-G~~v~vie~~~~~ 318 (604)
T PRK13984 281 KKNKKVAIVGSGPAGLSAAYFLATM-GYEVTVYESLSKP 318 (604)
T ss_pred cCCCeEEEECCCHHHHHHHHHHHHC-CCeEEEEecCCCC
Confidence 4567899999999999999999998 9999999998754
No 298
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=96.34 E-value=0.027 Score=56.85 Aligned_cols=32 Identities=25% Similarity=0.395 Sum_probs=28.6
Q ss_pred cEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417 25 DFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD 57 (385)
Q Consensus 25 DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~ 57 (385)
.++|||+|..|+-+|..|++. |.+|+++|+++
T Consensus 176 ~vvIIGgG~ig~E~A~~l~~~-G~~Vtlie~~~ 207 (466)
T PRK06115 176 HLVVIGAGVIGLELGSVWRRL-GAQVTVVEYLD 207 (466)
T ss_pred eEEEECCCHHHHHHHHHHHHc-CCeEEEEeCCC
Confidence 689999999999999999998 99999999754
No 299
>KOG0405|consensus
Probab=96.26 E-value=0.0043 Score=58.54 Aligned_cols=35 Identities=31% Similarity=0.625 Sum_probs=32.8
Q ss_pred CCcccEEEECCCchHHHHHhHhhcCCCceEEEEecC
Q psy10417 21 LDEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAG 56 (385)
Q Consensus 21 ~~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G 56 (385)
..+||++|||+|-+|...|++.|+. |.+|.|+|..
T Consensus 18 ~k~fDylvIGgGSGGvasARrAa~~-GAkv~l~E~~ 52 (478)
T KOG0405|consen 18 VKDFDYLVIGGGSGGVASARRAASH-GAKVALCELP 52 (478)
T ss_pred ccccceEEEcCCcchhHHhHHHHhc-CceEEEEecC
Confidence 4589999999999999999999998 9999999986
No 300
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=96.26 E-value=0.074 Score=49.75 Aligned_cols=33 Identities=27% Similarity=0.349 Sum_probs=30.1
Q ss_pred ccEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417 24 YDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD 57 (385)
Q Consensus 24 ~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~ 57 (385)
-.++|||+|..|+-+|..|++. +.+|.++++++
T Consensus 142 ~~v~ViG~G~~~~e~a~~l~~~-~~~V~~v~~~~ 174 (300)
T TIGR01292 142 KEVAVVGGGDSAIEEALYLTRI-AKKVTLVHRRD 174 (300)
T ss_pred CEEEEECCChHHHHHHHHHHhh-cCEEEEEEeCc
Confidence 4799999999999999999998 99999999864
No 301
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=96.21 E-value=0.034 Score=56.26 Aligned_cols=52 Identities=17% Similarity=0.245 Sum_probs=37.7
Q ss_pred CCCeEEEeCcEEEEEEEcCCCCeEEEEEEEeC-CeEEEEEeCcEEEEcCCCcccHHH
Q psy10417 267 RTNLHVIKNSRVVKIIIDPISKQAKGVELVKN-GHKRSVFARKEVIVSSGAFNSPKL 322 (385)
Q Consensus 267 ~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~~-g~~~~i~a~k~VVlAaGa~~tp~L 322 (385)
+.|++|++++.|++|..+ ++.+ .|.+.++ |+...+.++ .||+|+|...+...
T Consensus 236 ~~gi~i~~~~~v~~i~~~--~~~v-~v~~~~~~g~~~~i~~D-~vl~a~G~~p~~~~ 288 (475)
T PRK06327 236 KQGLDIHLGVKIGEIKTG--GKGV-SVAYTDADGEAQTLEVD-KLIVSIGRVPNTDG 288 (475)
T ss_pred HcCcEEEeCcEEEEEEEc--CCEE-EEEEEeCCCceeEEEcC-EEEEccCCccCCCC
Confidence 468999999999999865 3333 3555443 555678996 79999997766653
No 302
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=96.10 E-value=0.0048 Score=61.66 Aligned_cols=36 Identities=28% Similarity=0.353 Sum_probs=33.1
Q ss_pred ccEEEECCCchHHHHHhHhhcCCCceEEEEecCCCCC
Q psy10417 24 YDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDEDR 60 (385)
Q Consensus 24 ~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~~ 60 (385)
-.|.|||||++|+.+|..|+++ |++|+|.|+-+...
T Consensus 124 ~~VaviGaGPAGl~~a~~L~~~-G~~Vtv~e~~~~~G 159 (457)
T COG0493 124 KKVAVIGAGPAGLAAADDLSRA-GHDVTVFERVALDG 159 (457)
T ss_pred CEEEEECCCchHhhhHHHHHhC-CCeEEEeCCcCCCc
Confidence 6899999999999999999999 99999999976553
No 303
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=96.02 E-value=0.0065 Score=59.89 Aligned_cols=62 Identities=16% Similarity=0.260 Sum_probs=43.2
Q ss_pred hhhhhccCCCeEEEeCcEEEEEEEcCCCCeEEEEEEEeCCeEEEEEeCcEEEEcCCCcccHHHHHHcCCC
Q psy10417 260 YLKPIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVKNGHKRSVFARKEVIVSSGAFNSPKLLMLSGVG 329 (385)
Q Consensus 260 ~l~~~~~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~~g~~~~i~a~k~VVlAaGa~~tp~LL~~Sgig 329 (385)
++...+++.|+++++++.|+++..+ +.+ .|.+.+ |+ ++.++ .||+|+|...+..|+..+|+.
T Consensus 191 ~l~~~l~~~GV~i~~~~~V~~i~~~---~~~-~v~l~~-g~--~i~aD-~Vv~a~G~~pn~~l~~~~gl~ 252 (396)
T PRK09754 191 YLLQRHQQAGVRILLNNAIEHVVDG---EKV-ELTLQS-GE--TLQAD-VVIYGIGISANDQLAREANLD 252 (396)
T ss_pred HHHHHHHHCCCEEEeCCeeEEEEcC---CEE-EEEECC-CC--EEECC-EEEECCCCChhhHHHHhcCCC
Confidence 3444455679999999999998642 222 344433 33 58886 899999988777777777764
No 304
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=96.01 E-value=0.0059 Score=61.07 Aligned_cols=35 Identities=20% Similarity=0.321 Sum_probs=30.5
Q ss_pred cEEEECCCchHHHHHhHhhcC-CCceEEEEecCCCC
Q psy10417 25 DFIIVGAGVGGCVVAHRLSEV-PSWKVLLIEAGDED 59 (385)
Q Consensus 25 DviIVGsG~aG~~~A~~La~~-~G~~VlvLE~G~~~ 59 (385)
.|||||+|++|+.+|..|++. ++.+|+|+|+.+..
T Consensus 2 ~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~~~ 37 (444)
T PRK09564 2 KIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTDIV 37 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCCcc
Confidence 589999999999999999986 24599999998764
No 305
>PRK12831 putative oxidoreductase; Provisional
Probab=95.84 E-value=0.096 Score=52.82 Aligned_cols=31 Identities=16% Similarity=0.154 Sum_probs=28.8
Q ss_pred cEEEECCCchHHHHHhHhhcCCCceEEEEecC
Q psy10417 25 DFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAG 56 (385)
Q Consensus 25 DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G 56 (385)
.|+|||+|..|+-+|..|++. |.+|+|+++.
T Consensus 283 ~VvVIGgG~va~d~A~~l~r~-Ga~Vtlv~r~ 313 (464)
T PRK12831 283 KVAVVGGGNVAMDAARTALRL-GAEVHIVYRR 313 (464)
T ss_pred eEEEECCcHHHHHHHHHHHHc-CCEEEEEeec
Confidence 799999999999999999998 9999999864
No 306
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=95.73 E-value=0.011 Score=58.90 Aligned_cols=38 Identities=16% Similarity=0.402 Sum_probs=33.0
Q ss_pred CCcccEEEECCCchHHHHHhHhhcCCCceEEEEecCCCC
Q psy10417 21 LDEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDED 59 (385)
Q Consensus 21 ~~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~ 59 (385)
.+..+|||||+|.+|+.+|.+|... +.+|+|+|+.++.
T Consensus 8 ~~~~~vVIvGgG~aGl~~a~~L~~~-~~~ItlI~~~~~~ 45 (424)
T PTZ00318 8 LKKPNVVVLGTGWAGAYFVRNLDPK-KYNITVISPRNHM 45 (424)
T ss_pred CCCCeEEEECCCHHHHHHHHHhCcC-CCeEEEEcCCCCc
Confidence 3456899999999999999999876 8899999987764
No 307
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=95.71 E-value=0.06 Score=54.59 Aligned_cols=54 Identities=9% Similarity=0.065 Sum_probs=37.1
Q ss_pred cCCCeEEEeCcEEEEEEEcCCCCeEEEEEEEeCCeEEEEEeCcEEEEcCCCcccHHHH
Q psy10417 266 DRTNLHVIKNSRVVKIIIDPISKQAKGVELVKNGHKRSVFARKEVIVSSGAFNSPKLL 323 (385)
Q Consensus 266 ~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~~g~~~~i~a~k~VVlAaGa~~tp~LL 323 (385)
++.|++|++++.++++... ++.+ .|++.+++...++.++ .||+|.|-..+..+|
T Consensus 231 ~~~gV~i~~~~~v~~v~~~--~~~~-~v~~~~~~~~~~i~~D-~vl~a~G~~pn~~~l 284 (484)
T TIGR01438 231 EEHGVKFKRQFVPIKVEQI--EAKV-KVTFTDSTNGIEEEYD-TVLLAIGRDACTRKL 284 (484)
T ss_pred HHcCCEEEeCceEEEEEEc--CCeE-EEEEecCCcceEEEeC-EEEEEecCCcCCCcC
Confidence 3568999999999998754 2332 3444443223468896 899999987777654
No 308
>KOG1800|consensus
Probab=95.61 E-value=0.014 Score=55.80 Aligned_cols=36 Identities=28% Similarity=0.281 Sum_probs=32.1
Q ss_pred ccEEEECCCchHHHHHhHhhcC-CCceEEEEecCCCC
Q psy10417 24 YDFIIVGAGVGGCVVAHRLSEV-PSWKVLLIEAGDED 59 (385)
Q Consensus 24 ~DviIVGsG~aG~~~A~~La~~-~G~~VlvLE~G~~~ 59 (385)
.-|+|||||+||..+|..|.++ ++.+|.|+|+-+..
T Consensus 21 p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvP 57 (468)
T KOG1800|consen 21 PRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVP 57 (468)
T ss_pred ceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCcc
Confidence 3899999999999999999985 68999999997654
No 309
>KOG4405|consensus
Probab=95.54 E-value=0.015 Score=56.07 Aligned_cols=41 Identities=22% Similarity=0.408 Sum_probs=37.6
Q ss_pred CCCCcccEEEECCCchHHHHHhHhhcCCCceEEEEecCCCCC
Q psy10417 19 RLLDEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDEDR 60 (385)
Q Consensus 19 ~~~~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~~ 60 (385)
.++++||+||||.|.-=.++|...++. |.+||=||+.++.+
T Consensus 4 ~lP~~fDvVViGTGlpESilAAAcSrs-G~sVLHlDsn~yYG 44 (547)
T KOG4405|consen 4 ILPEEFDVVVIGTGLPESILAAACSRS-GSSVLHLDSNEYYG 44 (547)
T ss_pred CCchhccEEEEcCCCcHHHHHHHhhhc-CCceEeccCccccC
Confidence 378899999999999999999999998 99999999988764
No 310
>KOG1439|consensus
Probab=95.52 E-value=0.0098 Score=57.13 Aligned_cols=40 Identities=35% Similarity=0.563 Sum_probs=37.1
Q ss_pred CCCcccEEEECCCchHHHHHhHhhcCCCceEEEEecCCCCC
Q psy10417 20 LLDEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDEDR 60 (385)
Q Consensus 20 ~~~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~~ 60 (385)
|+++|||||+|.|..=|+.+..|+.+ |.+||.+||.++.+
T Consensus 1 mdeeyDvivlGTgl~ecilS~~Ls~~-gkkVLhiDrN~yYG 40 (440)
T KOG1439|consen 1 MDEEYDVIVLGTGLTECILSGALSVD-GKKVLHIDRNDYYG 40 (440)
T ss_pred CCCceeEEEEcCCchhheeeeeeeec-CcEEEEEeCCCCCC
Confidence 46789999999999999999999998 99999999999874
No 311
>KOG0399|consensus
Probab=95.30 E-value=0.022 Score=61.23 Aligned_cols=42 Identities=21% Similarity=0.273 Sum_probs=36.8
Q ss_pred CCCCcccEEEECCCchHHHHHhHhhcCCCceEEEEecCCCCCc
Q psy10417 19 RLLDEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDEDRI 61 (385)
Q Consensus 19 ~~~~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~~~ 61 (385)
....-.-|.|||||++|+++|.+|-++ |+.|+|.||.+....
T Consensus 1781 ~~rtg~~vaiigsgpaglaaadqlnk~-gh~v~vyer~dr~gg 1822 (2142)
T KOG0399|consen 1781 AFRTGKRVAIIGSGPAGLAAADQLNKA-GHTVTVYERSDRVGG 1822 (2142)
T ss_pred ccccCcEEEEEccCchhhhHHHHHhhc-CcEEEEEEecCCcCc
Confidence 334557899999999999999999999 999999999887654
No 312
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=95.11 E-value=0.096 Score=51.11 Aligned_cols=111 Identities=12% Similarity=0.071 Sum_probs=64.0
Q ss_pred HHHHHHHHHcCCCCCCCCCCCCCceeeeeeccccCCcccchhHHhhhhhccCCCeEEEeCcEEEEEEEcCCCCeEEEEEE
Q psy10417 216 DIFLKSSKELGYTNIDYNNPNTKIGFSIVQSTIKNGRRMTASKAYLKPIIDRTNLHVIKNSRVVKIIIDPISKQAKGVEL 295 (385)
Q Consensus 216 ~~~~~~~~~~G~~~~~~~~~~~~~g~~~~~~~~~~g~r~~~~~~~l~~~~~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~ 295 (385)
..+++.++++|++...... |..+ |.-.+.++....|...+++.|++|++++.|++| + +++ ..|.+
T Consensus 57 ~d~~~fF~~~Gi~~~~e~~-----grvf-----P~S~~A~sVv~~L~~~l~~~gV~i~~~~~V~~i--~--~~~-~~v~~ 121 (376)
T TIGR03862 57 VALQDWARGLGIETFVGSS-----GRVF-----PVEMKAAPLLRAWLKRLAEQGVQFHTRHRWIGW--Q--GGT-LRFET 121 (376)
T ss_pred HHHHHHHHHCCCceEECCC-----CEEC-----CCCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEE--e--CCc-EEEEE
Confidence 4566677888987532111 1111 111223333334444667889999999999999 3 222 34544
Q ss_pred EeCCeEEEEEeCcEEEEcCCCcccHHHHHHcCCCChhhhhhcCCCcccccc
Q psy10417 296 VKNGHKRSVFARKEVIVSSGAFNSPKLLMLSGVGPREHLTELGIPVVQDLR 346 (385)
Q Consensus 296 ~~~g~~~~i~a~k~VVlAaGa~~tp~LL~~Sgig~~~~l~~~gi~~~~~~p 346 (385)
..++ ..++|+ .||||+|+...|.+ =-+|.| ...+++.|+.++...|
T Consensus 122 ~~~~--~~~~a~-~vIlAtGG~s~p~~-Gs~g~g-y~la~~lGh~i~~~~P 167 (376)
T TIGR03862 122 PDGQ--STIEAD-AVVLALGGASWSQL-GSDGAW-QQVLDQRGVSVAPFAP 167 (376)
T ss_pred CCCc--eEEecC-EEEEcCCCcccccc-CCCcHH-HHHHHHCCCcccCCcC
Confidence 3221 258895 79999999887764 111211 3445566776665554
No 313
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=95.04 E-value=0.022 Score=55.72 Aligned_cols=35 Identities=17% Similarity=0.347 Sum_probs=30.2
Q ss_pred ccEEEECCCchHHHHHhHhhcC-CCceEEEEecCCC
Q psy10417 24 YDFIIVGAGVGGCVVAHRLSEV-PSWKVLLIEAGDE 58 (385)
Q Consensus 24 ~DviIVGsG~aG~~~A~~La~~-~G~~VlvLE~G~~ 58 (385)
.||||||+|+||+.+|..|.+. +..+|+|+++.+.
T Consensus 3 ~~vvIiG~G~AG~~~a~~lr~~~~~~~Itvi~~~~~ 38 (377)
T PRK04965 3 NGIVIIGSGFAARQLVKNIRKQDAHIPITLITADSG 38 (377)
T ss_pred CCEEEECCcHHHHHHHHHHHhhCcCCCEEEEeCCCC
Confidence 4899999999999999999874 4678999998664
No 314
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=94.99 E-value=0.03 Score=54.41 Aligned_cols=35 Identities=23% Similarity=0.452 Sum_probs=29.9
Q ss_pred cEEEECCCchHHHHHhHhhcC--CCceEEEEecCCCC
Q psy10417 25 DFIIVGAGVGGCVVAHRLSEV--PSWKVLLIEAGDED 59 (385)
Q Consensus 25 DviIVGsG~aG~~~A~~La~~--~G~~VlvLE~G~~~ 59 (385)
.|||||+|++|+.+|.+|.++ ++.+|+|+|+....
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~~ 37 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTT 37 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCCC
Confidence 389999999999999999642 47899999998764
No 315
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=94.94 E-value=0.029 Score=47.11 Aligned_cols=31 Identities=32% Similarity=0.552 Sum_probs=29.1
Q ss_pred EEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417 26 FIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD 57 (385)
Q Consensus 26 viIVGsG~aG~~~A~~La~~~G~~VlvLE~G~ 57 (385)
++|+|+|..|+..|++|+++ |.+|.++-|..
T Consensus 1 I~I~G~GaiG~~~a~~L~~~-g~~V~l~~r~~ 31 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQA-GHDVTLVSRSP 31 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHT-TCEEEEEESHH
T ss_pred CEEECcCHHHHHHHHHHHHC-CCceEEEEccc
Confidence 68999999999999999998 99999999875
No 316
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=94.93 E-value=0.025 Score=55.43 Aligned_cols=38 Identities=37% Similarity=0.335 Sum_probs=34.7
Q ss_pred cccEEEECCCchHHHHHhHhhcCCCceEEEEecCCCCCc
Q psy10417 23 EYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDEDRI 61 (385)
Q Consensus 23 ~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~~~ 61 (385)
.-+++|||+|.+|+.+|..|+++ |++|+++|+.+...+
T Consensus 136 ~~~v~vvG~G~~gle~A~~~~~~-G~~v~l~e~~~~~~~ 173 (415)
T COG0446 136 PKDVVVVGAGPIGLEAAEAAAKR-GKKVTLIEAADRLGG 173 (415)
T ss_pred cCeEEEECCcHHHHHHHHHHHHc-CCeEEEEEcccccch
Confidence 46999999999999999999999 999999999987643
No 317
>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=94.86 E-value=0.026 Score=53.03 Aligned_cols=34 Identities=24% Similarity=0.364 Sum_probs=30.6
Q ss_pred ccEEEECCCchHHHHHhHhhcCCCceEEEEecCCC
Q psy10417 24 YDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDE 58 (385)
Q Consensus 24 ~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~ 58 (385)
--|.|||+|.||.-+|+++|++ |.+|.+.|--+.
T Consensus 4 ~~i~VIGaGLAGSEAAwqiA~~-Gv~V~L~EMRp~ 37 (439)
T COG1206 4 QPINVIGAGLAGSEAAWQIAKR-GVPVILYEMRPV 37 (439)
T ss_pred CceEEEcccccccHHHHHHHHc-CCcEEEEEcccc
Confidence 4588999999999999999999 999999996553
No 318
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=94.83 E-value=0.026 Score=47.97 Aligned_cols=32 Identities=25% Similarity=0.457 Sum_probs=27.6
Q ss_pred EEECCCchHHHHHhHhhcC----CCceEEEEecCCC
Q psy10417 27 IIVGAGVGGCVVAHRLSEV----PSWKVLLIEAGDE 58 (385)
Q Consensus 27 iIVGsG~aG~~~A~~La~~----~G~~VlvLE~G~~ 58 (385)
+|||+|++|++++.+|.+. ...+|.|+|+.+.
T Consensus 1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~~ 36 (156)
T PF13454_consen 1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSPF 36 (156)
T ss_pred CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCCc
Confidence 5999999999999999886 2579999999554
No 319
>COG5044 MRS6 RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=94.75 E-value=0.04 Score=52.55 Aligned_cols=37 Identities=32% Similarity=0.409 Sum_probs=35.0
Q ss_pred cccEEEECCCchHHHHHhHhhcCCCceEEEEecCCCCC
Q psy10417 23 EYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDEDR 60 (385)
Q Consensus 23 ~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~~ 60 (385)
.|||||+|.|..=++.+..|+-+ |.+|+.||+.++.+
T Consensus 6 ~yDvii~GTgl~esils~~Ls~~-~k~VlhiD~Nd~YG 42 (434)
T COG5044 6 LYDVIILGTGLRESILSAALSWD-GKNVLHIDKNDYYG 42 (434)
T ss_pred cccEEEecccHHHHHHHHHhhhc-CceEEEEeCCCccC
Confidence 69999999999999999999998 99999999998774
No 320
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=94.63 E-value=0.82 Score=44.13 Aligned_cols=40 Identities=23% Similarity=0.182 Sum_probs=29.2
Q ss_pred CCCcccEEEECCCchHHHHHhHhhcC-CCceEEEEecCCCC
Q psy10417 20 LLDEYDFIIVGAGVGGCVVAHRLSEV-PSWKVLLIEAGDED 59 (385)
Q Consensus 20 ~~~~~DviIVGsG~aG~~~A~~La~~-~G~~VlvLE~G~~~ 59 (385)
......|+|||||-.++-++..|.++ +..+|.++=|+...
T Consensus 187 ~~~~~~V~VVGgGQSAAEi~~~L~~~~~~~~V~~i~R~~~~ 227 (341)
T PF13434_consen 187 SLAGKRVAVVGGGQSAAEIFLDLLRRGPEAKVTWISRSPGF 227 (341)
T ss_dssp ----EEEEEE-SSHHHHHHHHHHHHH-TTEEEEEEESSSS-
T ss_pred ccCCCeEEEECCcHhHHHHHHHHHhCCCCcEEEEEECCCcc
Confidence 56677999999999999999999997 22589999887643
No 321
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=94.50 E-value=0.32 Score=53.82 Aligned_cols=32 Identities=16% Similarity=0.117 Sum_probs=28.1
Q ss_pred ccEEEECCCchHHHHHhHhhcCCC-ceEEEEecC
Q psy10417 24 YDFIIVGAGVGGCVVAHRLSEVPS-WKVLLIEAG 56 (385)
Q Consensus 24 ~DviIVGsG~aG~~~A~~La~~~G-~~VlvLE~G 56 (385)
-.++|||+|..|+-+|..|++. | ..|+|+|..
T Consensus 318 k~VvViG~G~~g~e~A~~L~~~-G~~vV~vv~~~ 350 (985)
T TIGR01372 318 KRIVVATNNDSAYRAAADLLAA-GIAVVAIIDAR 350 (985)
T ss_pred CeEEEECCCHHHHHHHHHHHHc-CCceEEEEccC
Confidence 3689999999999999999998 8 568999864
No 322
>KOG2403|consensus
Probab=94.19 E-value=0.11 Score=52.12 Aligned_cols=35 Identities=34% Similarity=0.416 Sum_probs=31.2
Q ss_pred CCcccEEEECCCchHHHHHhHhhcCCCceEEEEecC
Q psy10417 21 LDEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAG 56 (385)
Q Consensus 21 ~~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G 56 (385)
+..||.+|||+|.+|+-+|..|++. |..+.++-+-
T Consensus 53 ~~~~da~vvgaggAGlr~~~~lae~-g~~~a~itkl 87 (642)
T KOG2403|consen 53 DHTYDAVVVGAGGAGLRAARGLAEL-GEKTAVITKL 87 (642)
T ss_pred eeeceeEEEeccchhhhhhhhhhhc-CceEEEEecc
Confidence 3459999999999999999999998 9999998763
No 323
>KOG2755|consensus
Probab=94.16 E-value=0.034 Score=50.66 Aligned_cols=34 Identities=41% Similarity=0.708 Sum_probs=30.4
Q ss_pred EEEECCCchHHHHHhHhhcC-CCceEEEEecCCCC
Q psy10417 26 FIIVGAGVGGCVVAHRLSEV-PSWKVLLIEAGDED 59 (385)
Q Consensus 26 viIVGsG~aG~~~A~~La~~-~G~~VlvLE~G~~~ 59 (385)
+||||||+||.+||..||.. |..+|++|-+.+..
T Consensus 2 fivvgggiagvscaeqla~~~psa~illitass~v 36 (334)
T KOG2755|consen 2 FIVVGGGIAGVSCAEQLAQLEPSAEILLITASSFV 36 (334)
T ss_pred eEEEcCccccccHHHHHHhhCCCCcEEEEeccHHH
Confidence 79999999999999999984 67899999987765
No 324
>KOG3851|consensus
Probab=94.14 E-value=0.046 Score=51.20 Aligned_cols=41 Identities=22% Similarity=0.380 Sum_probs=34.2
Q ss_pred CCCCCCcccEEEECCCchHHHHHhHhhcC-CCceEEEEecCC
Q psy10417 17 NKRLLDEYDFIIVGAGVGGCVVAHRLSEV-PSWKVLLIEAGD 57 (385)
Q Consensus 17 ~~~~~~~~DviIVGsG~aG~~~A~~La~~-~G~~VlvLE~G~ 57 (385)
.....++|.|+|||+|.+|+.+|+++.+. +--+|.++|-.+
T Consensus 33 ~~~~~~h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~e 74 (446)
T KOG3851|consen 33 ARFARKHFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPAE 74 (446)
T ss_pred hhhcccceEEEEEcCCcchhHHHHHHHhhcCCCceEEecchh
Confidence 34557899999999999999999999986 345899999654
No 325
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=94.08 E-value=0.049 Score=46.32 Aligned_cols=31 Identities=26% Similarity=0.381 Sum_probs=28.9
Q ss_pred EEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417 26 FIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD 57 (385)
Q Consensus 26 viIVGsG~aG~~~A~~La~~~G~~VlvLE~G~ 57 (385)
|.|+|+|..|.++|..|+++ |.+|.+..+-.
T Consensus 2 I~ViGaG~~G~AlA~~la~~-g~~V~l~~~~~ 32 (157)
T PF01210_consen 2 IAVIGAGNWGTALAALLADN-GHEVTLWGRDE 32 (157)
T ss_dssp EEEESSSHHHHHHHHHHHHC-TEEEEEETSCH
T ss_pred EEEECcCHHHHHHHHHHHHc-CCEEEEEeccH
Confidence 78999999999999999999 99999998854
No 326
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=93.95 E-value=0.058 Score=48.87 Aligned_cols=33 Identities=45% Similarity=0.638 Sum_probs=30.6
Q ss_pred cEEEECCCchHHHHHhHhhcCCCceEEEEecCCC
Q psy10417 25 DFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDE 58 (385)
Q Consensus 25 DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~ 58 (385)
.++|||+|-.|..+|..|++. |..|+++|+.+.
T Consensus 2 ~iiIiG~G~vG~~va~~L~~~-g~~Vv~Id~d~~ 34 (225)
T COG0569 2 KIIIIGAGRVGRSVARELSEE-GHNVVLIDRDEE 34 (225)
T ss_pred EEEEECCcHHHHHHHHHHHhC-CCceEEEEcCHH
Confidence 589999999999999999998 999999998654
No 327
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=93.82 E-value=0.063 Score=50.99 Aligned_cols=33 Identities=33% Similarity=0.397 Sum_probs=30.6
Q ss_pred ccEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417 24 YDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD 57 (385)
Q Consensus 24 ~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~ 57 (385)
..++|||+|..|+..|..|+++ |.+|.++.|+.
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~-G~~V~lv~r~~ 35 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARA-GLPVRLILRDR 35 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhC-CCCeEEEEech
Confidence 3699999999999999999998 99999999974
No 328
>KOG1336|consensus
Probab=93.77 E-value=0.38 Score=47.55 Aligned_cols=56 Identities=14% Similarity=0.134 Sum_probs=46.8
Q ss_pred ccCCCeEEEeCcEEEEEEEcCCCCeEEEEEEEeCCeEEEEEeCcEEEEcCCCcccHHHHHH
Q psy10417 265 IDRTNLHVIKNSRVVKIIIDPISKQAKGVELVKNGHKRSVFARKEVIVSSGAFNSPKLLML 325 (385)
Q Consensus 265 ~~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~~g~~~~i~a~k~VVlAaGa~~tp~LL~~ 325 (385)
.+++|+++++++.+.++..+. .|+++-|.+.++. ++.|+ .||+..|+--+..++..
T Consensus 265 ~e~kgVk~~~~t~~s~l~~~~-~Gev~~V~l~dg~---~l~ad-lvv~GiG~~p~t~~~~~ 320 (478)
T KOG1336|consen 265 YENKGVKFYLGTVVSSLEGNS-DGEVSEVKLKDGK---TLEAD-LVVVGIGIKPNTSFLEK 320 (478)
T ss_pred HHhcCeEEEEecceeecccCC-CCcEEEEEeccCC---EeccC-eEEEeeccccccccccc
Confidence 346899999999999999875 4899999998864 79996 89999998877777664
No 329
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=93.36 E-value=0.085 Score=46.02 Aligned_cols=31 Identities=23% Similarity=0.407 Sum_probs=27.1
Q ss_pred EEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417 26 FIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD 57 (385)
Q Consensus 26 viIVGsG~aG~~~A~~La~~~G~~VlvLE~G~ 57 (385)
|.|||+|..|..+|..++.+ |++|.++|..+
T Consensus 2 V~ViGaG~mG~~iA~~~a~~-G~~V~l~d~~~ 32 (180)
T PF02737_consen 2 VAVIGAGTMGRGIAALFARA-GYEVTLYDRSP 32 (180)
T ss_dssp EEEES-SHHHHHHHHHHHHT-TSEEEEE-SSH
T ss_pred EEEEcCCHHHHHHHHHHHhC-CCcEEEEECCh
Confidence 68999999999999999998 99999999854
No 330
>KOG0404|consensus
Probab=93.34 E-value=0.071 Score=47.50 Aligned_cols=62 Identities=18% Similarity=0.266 Sum_probs=45.2
Q ss_pred hhhhhccCCCeEEEeCcEEEEEEEcCCCCeEEEEEEEe--CCeEEEEEeCcEEEEcCCCcccHHHHH
Q psy10417 260 YLKPIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVK--NGHKRSVFARKEVIVSSGAFNSPKLLM 324 (385)
Q Consensus 260 ~l~~~~~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~--~g~~~~i~a~k~VVlAaGa~~tp~LL~ 324 (385)
+...+.+.+|+++++|+.+.+..-+ ++...++.+++ .|++-.++.+ .+..+-|--.+.++|.
T Consensus 198 Mq~ra~~npnI~v~~nt~~~ea~gd--~~~l~~l~ikn~~tge~~dl~v~-GlFf~IGH~Pat~~l~ 261 (322)
T KOG0404|consen 198 MQQRAEKNPNIEVLYNTVAVEALGD--GKLLNGLRIKNVKTGEETDLPVS-GLFFAIGHSPATKFLK 261 (322)
T ss_pred HHHHHhcCCCeEEEechhhhhhccC--cccccceEEEecccCcccccccc-eeEEEecCCchhhHhc
Confidence 3445667899999999999888766 56666777763 4666688885 7999999555555554
No 331
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=93.34 E-value=0.084 Score=53.34 Aligned_cols=34 Identities=35% Similarity=0.476 Sum_probs=32.0
Q ss_pred cEEEECCCchHHHHHhHhhcCCCceEEEEecCCCC
Q psy10417 25 DFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDED 59 (385)
Q Consensus 25 DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~ 59 (385)
.++|||+|.+|+-+|..|++. |.+|+++|+++..
T Consensus 182 ~vvIIGgG~~G~E~A~~l~~~-g~~Vtli~~~~~i 215 (472)
T PRK05976 182 SLVIVGGGVIGLEWASMLADF-GVEVTVVEAADRI 215 (472)
T ss_pred EEEEECCCHHHHHHHHHHHHc-CCeEEEEEecCcc
Confidence 799999999999999999998 9999999998765
No 332
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=93.20 E-value=0.098 Score=45.84 Aligned_cols=32 Identities=22% Similarity=0.400 Sum_probs=26.0
Q ss_pred cEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417 25 DFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD 57 (385)
Q Consensus 25 DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~ 57 (385)
-|.|||.|..|+++|..||++ |++|+.+|...
T Consensus 2 ~I~ViGlGyvGl~~A~~lA~~-G~~V~g~D~~~ 33 (185)
T PF03721_consen 2 KIAVIGLGYVGLPLAAALAEK-GHQVIGVDIDE 33 (185)
T ss_dssp EEEEE--STTHHHHHHHHHHT-TSEEEEE-S-H
T ss_pred EEEEECCCcchHHHHHHHHhC-CCEEEEEeCCh
Confidence 378999999999999999998 99999999764
No 333
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=93.17 E-value=0.095 Score=52.38 Aligned_cols=34 Identities=24% Similarity=0.261 Sum_probs=31.8
Q ss_pred cEEEECCCchHHHHHhHhhcCCCceEEEEecCCCC
Q psy10417 25 DFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDED 59 (385)
Q Consensus 25 DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~ 59 (385)
.++|||+|.+|+-+|..|++. |.+|+|+|+++..
T Consensus 159 ~vvIIGgG~~g~e~A~~l~~~-g~~Vtli~~~~~~ 192 (438)
T PRK07251 159 RLGIIGGGNIGLEFAGLYNKL-GSKVTVLDAASTI 192 (438)
T ss_pred eEEEECCCHHHHHHHHHHHHc-CCeEEEEecCCcc
Confidence 699999999999999999998 9999999998765
No 334
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=92.76 E-value=0.13 Score=48.99 Aligned_cols=33 Identities=21% Similarity=0.298 Sum_probs=30.7
Q ss_pred ccEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417 24 YDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD 57 (385)
Q Consensus 24 ~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~ 57 (385)
..+.|||+|..|+..|..|+++ |.+|.++.|+.
T Consensus 6 m~I~IiG~GaiG~~lA~~L~~~-g~~V~~~~r~~ 38 (313)
T PRK06249 6 PRIGIIGTGAIGGFYGAMLARA-GFDVHFLLRSD 38 (313)
T ss_pred cEEEEECCCHHHHHHHHHHHHC-CCeEEEEEeCC
Confidence 4699999999999999999998 99999999975
No 335
>PRK07846 mycothione reductase; Reviewed
Probab=92.62 E-value=0.13 Score=51.66 Aligned_cols=35 Identities=23% Similarity=0.343 Sum_probs=32.2
Q ss_pred ccEEEECCCchHHHHHhHhhcCCCceEEEEecCCCC
Q psy10417 24 YDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDED 59 (385)
Q Consensus 24 ~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~ 59 (385)
-.++|||+|..|+-+|..|++. |.+|+++|+++..
T Consensus 167 ~~vvIIGgG~iG~E~A~~l~~~-G~~Vtli~~~~~l 201 (451)
T PRK07846 167 ESLVIVGGGFIAAEFAHVFSAL-GVRVTVVNRSGRL 201 (451)
T ss_pred CeEEEECCCHHHHHHHHHHHHc-CCeEEEEEcCCcc
Confidence 3799999999999999999998 9999999998754
No 336
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=92.61 E-value=0.12 Score=52.20 Aligned_cols=35 Identities=17% Similarity=0.267 Sum_probs=32.3
Q ss_pred cEEEECCCchHHHHHhHhhcCCCceEEEEecCCCCC
Q psy10417 25 DFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDEDR 60 (385)
Q Consensus 25 DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~~ 60 (385)
.++|||+|..|+-+|..|++. |.+|+|+|+++...
T Consensus 176 ~vvIiGgG~iG~E~A~~l~~~-G~~Vtlv~~~~~il 210 (471)
T PRK06467 176 RLLVMGGGIIGLEMGTVYHRL-GSEVDVVEMFDQVI 210 (471)
T ss_pred eEEEECCCHHHHHHHHHHHHc-CCCEEEEecCCCCC
Confidence 799999999999999999998 99999999988653
No 337
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=92.61 E-value=0.13 Score=51.74 Aligned_cols=34 Identities=35% Similarity=0.533 Sum_probs=31.7
Q ss_pred cEEEECCCchHHHHHhHhhcCCCceEEEEecCCCC
Q psy10417 25 DFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDED 59 (385)
Q Consensus 25 DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~ 59 (385)
.++|||+|.+|+-+|..|++. |.+|+++|+++..
T Consensus 172 ~vvIIGgG~iG~E~A~~l~~~-g~~Vtli~~~~~l 205 (458)
T PRK06912 172 SLLIVGGGVIGCEFASIYSRL-GTKVTIVEMAPQL 205 (458)
T ss_pred cEEEECCCHHHHHHHHHHHHc-CCeEEEEecCCCc
Confidence 799999999999999999998 9999999998765
No 338
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=92.55 E-value=0.099 Score=51.09 Aligned_cols=44 Identities=16% Similarity=0.121 Sum_probs=31.2
Q ss_pred cCCCeEEEeCcEEEEEEEcCCCCeEEEEEEEeCCeEEEEEeCcEEEEcCCC
Q psy10417 266 DRTNLHVIKNSRVVKIIIDPISKQAKGVELVKNGHKRSVFARKEVIVSSGA 316 (385)
Q Consensus 266 ~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~~g~~~~i~a~k~VVlAaGa 316 (385)
...+.+|+++++|++|..+ +++++ |.+.+++ ++.|+ .||+|+..
T Consensus 220 ~~~g~~i~l~~~V~~I~~~--~~~v~-v~~~~g~---~~~ad-~VI~a~p~ 263 (450)
T PF01593_consen 220 EELGGEIRLNTPVTRIERE--DGGVT-VTTEDGE---TIEAD-AVISAVPP 263 (450)
T ss_dssp HHHGGGEESSEEEEEEEEE--SSEEE-EEETTSS---EEEES-EEEE-S-H
T ss_pred hhcCceeecCCcceecccc--ccccc-cccccce---EEecc-eeeecCch
Confidence 3456699999999999998 55553 4444443 78896 79999885
No 339
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=92.46 E-value=0.13 Score=51.65 Aligned_cols=34 Identities=24% Similarity=0.232 Sum_probs=31.8
Q ss_pred cEEEECCCchHHHHHhHhhcCCCceEEEEecCCCC
Q psy10417 25 DFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDED 59 (385)
Q Consensus 25 DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~ 59 (385)
.++|||+|..|+-+|..|++. |.+|+++|+++..
T Consensus 168 ~vvIIGgG~iG~E~A~~l~~~-g~~Vtli~~~~~i 201 (450)
T TIGR01421 168 RVVIVGAGYIAVELAGVLHGL-GSETHLVIRHERV 201 (450)
T ss_pred eEEEECCCHHHHHHHHHHHHc-CCcEEEEecCCCC
Confidence 799999999999999999998 9999999998754
No 340
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.39 E-value=0.15 Score=50.55 Aligned_cols=36 Identities=25% Similarity=0.405 Sum_probs=29.5
Q ss_pred ccEEEECCCchHHHHHhHhhcC--CCceEEEEecCCCC
Q psy10417 24 YDFIIVGAGVGGCVVAHRLSEV--PSWKVLLIEAGDED 59 (385)
Q Consensus 24 ~DviIVGsG~aG~~~A~~La~~--~G~~VlvLE~G~~~ 59 (385)
++|+|||+|++|+++|.+|.+. +-.+|.|+|.-+..
T Consensus 2 ~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~ 39 (474)
T COG4529 2 FKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNF 39 (474)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCCCCceEEecccccc
Confidence 6899999999999999999984 12239999986544
No 341
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=92.35 E-value=0.16 Score=50.92 Aligned_cols=36 Identities=31% Similarity=0.398 Sum_probs=33.3
Q ss_pred cEEEECCCchHHHHHhHhhcCCCceEEEEecCCCCCc
Q psy10417 25 DFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDEDRI 61 (385)
Q Consensus 25 DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~~~ 61 (385)
-++|||+|..|+-.|.-+++- |.+|+|||+++..-+
T Consensus 175 ~lvIiGgG~IGlE~a~~~~~L-G~~VTiie~~~~iLp 210 (454)
T COG1249 175 SLVIVGGGYIGLEFASVFAAL-GSKVTVVERGDRILP 210 (454)
T ss_pred EEEEECCCHHHHHHHHHHHHc-CCcEEEEecCCCCCC
Confidence 489999999999999999998 999999999998754
No 342
>PRK06370 mercuric reductase; Validated
Probab=92.14 E-value=0.16 Score=51.22 Aligned_cols=36 Identities=25% Similarity=0.324 Sum_probs=32.7
Q ss_pred ccEEEECCCchHHHHHhHhhcCCCceEEEEecCCCCC
Q psy10417 24 YDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDEDR 60 (385)
Q Consensus 24 ~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~~ 60 (385)
-.++|||+|..|+-+|..|++. |.+|+++|+++...
T Consensus 172 ~~vvVIGgG~~g~E~A~~l~~~-G~~Vtli~~~~~~l 207 (463)
T PRK06370 172 EHLVIIGGGYIGLEFAQMFRRF-GSEVTVIERGPRLL 207 (463)
T ss_pred CEEEEECCCHHHHHHHHHHHHc-CCeEEEEEcCCCCC
Confidence 3799999999999999999998 99999999988653
No 343
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=91.99 E-value=0.15 Score=48.12 Aligned_cols=30 Identities=30% Similarity=0.408 Sum_probs=28.4
Q ss_pred cEEEECCCchHHHHHhHhhcCCCceEEEEec
Q psy10417 25 DFIIVGAGVGGCVVAHRLSEVPSWKVLLIEA 55 (385)
Q Consensus 25 DviIVGsG~aG~~~A~~La~~~G~~VlvLE~ 55 (385)
.+.|||+|..|+.+|..|+++ |.+|+++.+
T Consensus 2 kI~IiG~G~iG~~~a~~L~~~-g~~V~~~~r 31 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLEA-GRDVTFLVR 31 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHC-CCceEEEec
Confidence 479999999999999999998 999999998
No 344
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=91.97 E-value=0.15 Score=54.95 Aligned_cols=34 Identities=12% Similarity=0.370 Sum_probs=29.1
Q ss_pred EEEECCCchHHHHHhHhhcC--CCceEEEEecCCCC
Q psy10417 26 FIIVGAGVGGCVVAHRLSEV--PSWKVLLIEAGDED 59 (385)
Q Consensus 26 viIVGsG~aG~~~A~~La~~--~G~~VlvLE~G~~~ 59 (385)
+||||+|++|+.+|.+|.+. .+.+|+|+|+.+..
T Consensus 1 iVIIG~G~AG~~aa~~l~~~~~~~~~Itvi~~e~~~ 36 (785)
T TIGR02374 1 LVLVGNGMAGHRCIEEVLKLNRHMFEITIFGEEPHP 36 (785)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCCeEEEEeCCCCC
Confidence 58999999999999988763 36799999998764
No 345
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=91.93 E-value=0.21 Score=50.54 Aligned_cols=32 Identities=31% Similarity=0.601 Sum_probs=29.8
Q ss_pred cEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417 25 DFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD 57 (385)
Q Consensus 25 DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~ 57 (385)
.|+|||+|.+|+.+|..|+++ |.+|.++|+.+
T Consensus 18 ~v~viG~G~~G~~~A~~L~~~-G~~V~~~d~~~ 49 (480)
T PRK01438 18 RVVVAGLGVSGFAAADALLEL-GARVTVVDDGD 49 (480)
T ss_pred EEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCc
Confidence 699999999999999999998 99999999765
No 346
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=91.91 E-value=0.17 Score=47.65 Aligned_cols=31 Identities=26% Similarity=0.409 Sum_probs=28.8
Q ss_pred cEEEECCCchHHHHHhHhhcCCCceEEEEecC
Q psy10417 25 DFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAG 56 (385)
Q Consensus 25 DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G 56 (385)
.+.|||+|..|..+|..|+++ |.+|.++.+.
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~-g~~V~~~~r~ 32 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQA-GHDVTLVARR 32 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhC-CCeEEEEECC
Confidence 379999999999999999998 9999999984
No 347
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=91.91 E-value=0.16 Score=50.72 Aligned_cols=34 Identities=29% Similarity=0.282 Sum_probs=31.6
Q ss_pred cEEEECCCchHHHHHhHhhcCCCceEEEEecCCCC
Q psy10417 25 DFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDED 59 (385)
Q Consensus 25 DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~ 59 (385)
.++|||+|..|+-+|..|++. |.+|.++|+++..
T Consensus 150 ~vvViGgG~ig~E~A~~l~~~-g~~Vtli~~~~~l 183 (438)
T PRK13512 150 KALVVGAGYISLEVLENLYER-GLHPTLIHRSDKI 183 (438)
T ss_pred EEEEECCCHHHHHHHHHHHhC-CCcEEEEeccccc
Confidence 699999999999999999998 9999999998754
No 348
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=91.91 E-value=0.18 Score=50.82 Aligned_cols=34 Identities=21% Similarity=0.324 Sum_probs=31.8
Q ss_pred cEEEECCCchHHHHHhHhhcCCCceEEEEecCCCC
Q psy10417 25 DFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDED 59 (385)
Q Consensus 25 DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~ 59 (385)
.++|||+|..|+-+|..|++. |.+|+++|+++..
T Consensus 174 ~vvVvGgG~~g~E~A~~l~~~-g~~Vtli~~~~~~ 207 (462)
T PRK06416 174 SLVVIGGGYIGVEFASAYASL-GAEVTIVEALPRI 207 (462)
T ss_pred eEEEECCCHHHHHHHHHHHHc-CCeEEEEEcCCCc
Confidence 699999999999999999998 9999999998765
No 349
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=91.89 E-value=0.17 Score=50.28 Aligned_cols=34 Identities=29% Similarity=0.400 Sum_probs=31.5
Q ss_pred cEEEECCCchHHHHHhHhhcCCCceEEEEecCCCC
Q psy10417 25 DFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDED 59 (385)
Q Consensus 25 DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~ 59 (385)
.++|||+|.+|+-+|..|++. |.+|+++++++..
T Consensus 139 ~vvViGgG~~g~e~A~~l~~~-g~~Vtli~~~~~~ 172 (427)
T TIGR03385 139 NVVIIGGGYIGIEMAEALRER-GKNVTLIHRSERI 172 (427)
T ss_pred eEEEECCCHHHHHHHHHHHhC-CCcEEEEECCccc
Confidence 799999999999999999998 9999999998754
No 350
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=91.87 E-value=0.16 Score=48.32 Aligned_cols=32 Identities=28% Similarity=0.337 Sum_probs=30.0
Q ss_pred cEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417 25 DFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD 57 (385)
Q Consensus 25 DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~ 57 (385)
.|.|||+|..|...|..|+++ |++|+++|+..
T Consensus 4 ~V~VIG~G~mG~~iA~~la~~-G~~V~v~d~~~ 35 (308)
T PRK06129 4 SVAIIGAGLIGRAWAIVFARA-GHEVRLWDADP 35 (308)
T ss_pred EEEEECccHHHHHHHHHHHHC-CCeeEEEeCCH
Confidence 589999999999999999998 99999999864
No 351
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=91.72 E-value=0.19 Score=50.54 Aligned_cols=34 Identities=41% Similarity=0.554 Sum_probs=31.8
Q ss_pred cEEEECCCchHHHHHhHhhcCCCceEEEEecCCCC
Q psy10417 25 DFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDED 59 (385)
Q Consensus 25 DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~ 59 (385)
.++|||+|..|+-+|..|++. |.+|+++|+++..
T Consensus 177 ~v~IiGgG~~g~E~A~~l~~~-g~~Vtli~~~~~~ 210 (461)
T PRK05249 177 SLIIYGAGVIGCEYASIFAAL-GVKVTLINTRDRL 210 (461)
T ss_pred eEEEECCCHHHHHHHHHHHHc-CCeEEEEecCCCc
Confidence 699999999999999999998 9999999998755
No 352
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=91.64 E-value=0.36 Score=48.35 Aligned_cols=35 Identities=29% Similarity=0.404 Sum_probs=32.2
Q ss_pred cEEEECCCchHHHHHhHhhcCCCceEEEEecCCCCC
Q psy10417 25 DFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDEDR 60 (385)
Q Consensus 25 DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~~ 60 (385)
+|+|||+|++|+++|++|+++ |++|+|+|+.+...
T Consensus 1 ~v~IiGaG~aGl~aA~~L~~~-G~~v~vlE~~~~~G 35 (453)
T TIGR02731 1 RVAIAGAGLAGLSCAKYLADA-GHTPIVLEARDVLG 35 (453)
T ss_pred CEEEECCCHHHHHHHHHHHHC-CCcEEEEecCCCCC
Confidence 489999999999999999998 99999999987654
No 353
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=91.55 E-value=0.2 Score=54.29 Aligned_cols=35 Identities=14% Similarity=0.257 Sum_probs=30.4
Q ss_pred cEEEECCCchHHHHHhHhhcC---CCceEEEEecCCCC
Q psy10417 25 DFIIVGAGVGGCVVAHRLSEV---PSWKVLLIEAGDED 59 (385)
Q Consensus 25 DviIVGsG~aG~~~A~~La~~---~G~~VlvLE~G~~~ 59 (385)
.+||||+|++|+.+|.+|.+. .+.+|+|+++.+..
T Consensus 5 kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~~~ 42 (847)
T PRK14989 5 RLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEPRI 42 (847)
T ss_pred cEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCCCC
Confidence 799999999999999999753 36899999998764
No 354
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=91.35 E-value=0.22 Score=50.13 Aligned_cols=34 Identities=32% Similarity=0.509 Sum_probs=31.8
Q ss_pred cEEEECCCchHHHHHhHhhcCCCceEEEEecCCCC
Q psy10417 25 DFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDED 59 (385)
Q Consensus 25 DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~ 59 (385)
.++|||+|..|+-+|..|++. |.+|.++|+++..
T Consensus 171 ~v~VIGgG~~g~E~A~~l~~~-g~~Vtli~~~~~~ 204 (460)
T PRK06292 171 SLAVIGGGVIGLELGQALSRL-GVKVTVFERGDRI 204 (460)
T ss_pred eEEEECCCHHHHHHHHHHHHc-CCcEEEEecCCCc
Confidence 799999999999999999998 9999999998765
No 355
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=91.25 E-value=0.22 Score=50.01 Aligned_cols=34 Identities=24% Similarity=0.376 Sum_probs=31.7
Q ss_pred cEEEECCCchHHHHHhHhhcCCCceEEEEecCCCC
Q psy10417 25 DFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDED 59 (385)
Q Consensus 25 DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~ 59 (385)
.++|||+|..|+-+|..|++. |.+|+++|+++..
T Consensus 171 ~vvVIGgG~ig~E~A~~l~~~-G~~Vtli~~~~~l 204 (452)
T TIGR03452 171 SLVIVGGGYIAAEFAHVFSAL-GTRVTIVNRSTKL 204 (452)
T ss_pred cEEEECCCHHHHHHHHHHHhC-CCcEEEEEccCcc
Confidence 799999999999999999998 9999999998764
No 356
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=91.08 E-value=0.22 Score=50.11 Aligned_cols=32 Identities=25% Similarity=0.518 Sum_probs=29.6
Q ss_pred EEEECCCchHHHHHhHhhcCCCceEEEEecCCC
Q psy10417 26 FIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDE 58 (385)
Q Consensus 26 viIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~ 58 (385)
|.|||.|.+|+++|..|+++ |++|++.|+...
T Consensus 3 v~viG~G~sG~s~a~~l~~~-G~~V~~~D~~~~ 34 (459)
T PRK02705 3 AHVIGLGRSGIAAARLLKAQ-GWEVVVSDRNDS 34 (459)
T ss_pred EEEEccCHHHHHHHHHHHHC-CCEEEEECCCCc
Confidence 79999999999999999998 999999998754
No 357
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=90.86 E-value=0.26 Score=49.43 Aligned_cols=34 Identities=24% Similarity=0.241 Sum_probs=31.6
Q ss_pred cEEEECCCchHHHHHhHhhcCCCceEEEEecCCCC
Q psy10417 25 DFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDED 59 (385)
Q Consensus 25 DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~ 59 (385)
.++|||+|..|+-+|..|++. |.+|.++|+++..
T Consensus 168 ~vvVIGgG~~g~E~A~~l~~~-G~~Vtli~~~~~~ 201 (446)
T TIGR01424 168 SILILGGGYIAVEFAGIWRGL-GVQVTLIYRGELI 201 (446)
T ss_pred eEEEECCcHHHHHHHHHHHHc-CCeEEEEEeCCCC
Confidence 589999999999999999998 9999999998864
No 358
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=90.80 E-value=0.3 Score=38.78 Aligned_cols=31 Identities=29% Similarity=0.439 Sum_probs=27.8
Q ss_pred EEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417 26 FIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD 57 (385)
Q Consensus 26 viIVGsG~aG~~~A~~La~~~G~~VlvLE~G~ 57 (385)
|||+|.|..|..+|..|.+. +.+|+++|+.+
T Consensus 1 vvI~G~g~~~~~i~~~L~~~-~~~vvvid~d~ 31 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEG-GIDVVVIDRDP 31 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHT-TSEEEEEESSH
T ss_pred eEEEcCCHHHHHHHHHHHhC-CCEEEEEECCc
Confidence 69999999999999999996 89999999864
No 359
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=90.80 E-value=0.27 Score=47.00 Aligned_cols=32 Identities=22% Similarity=0.277 Sum_probs=29.6
Q ss_pred cEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417 25 DFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD 57 (385)
Q Consensus 25 DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~ 57 (385)
-|.|||+|..|...|..++.+ |++|++.|..+
T Consensus 9 ~VaVIGaG~MG~giA~~~a~a-G~~V~l~D~~~ 40 (321)
T PRK07066 9 TFAAIGSGVIGSGWVARALAH-GLDVVAWDPAP 40 (321)
T ss_pred EEEEECcCHHHHHHHHHHHhC-CCeEEEEeCCH
Confidence 388999999999999999998 99999999764
No 360
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=90.74 E-value=0.18 Score=46.87 Aligned_cols=47 Identities=30% Similarity=0.442 Sum_probs=36.3
Q ss_pred hhhhcCCC--CCCCcccEEEECCCchHHHHHhHhhcCCC-ceEEEEecCCC
Q psy10417 11 EEFLYGNK--RLLDEYDFIIVGAGVGGCVVAHRLSEVPS-WKVLLIEAGDE 58 (385)
Q Consensus 11 ~~~~~~~~--~~~~~~DviIVGsG~aG~~~A~~La~~~G-~~VlvLE~G~~ 58 (385)
++.+++.. ......-|+|||.|..|+.+|..||+. | .+++++|....
T Consensus 16 ~~~L~G~e~~~kL~~s~VlVvG~GGVGs~vae~Lar~-GVg~itLiD~D~V 65 (268)
T PRK15116 16 TARLYGEKALQLFADAHICVVGIGGVGSWAAEALART-GIGAITLIDMDDV 65 (268)
T ss_pred HHHHhCHHHHHHhcCCCEEEECcCHHHHHHHHHHHHc-CCCEEEEEeCCEe
Confidence 34444443 224567899999999999999999998 8 69999996543
No 361
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=90.70 E-value=0.26 Score=47.75 Aligned_cols=32 Identities=22% Similarity=0.473 Sum_probs=29.3
Q ss_pred cEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417 25 DFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD 57 (385)
Q Consensus 25 DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~ 57 (385)
.+.|||+|..|++.|..||+. |+.|+.+|...
T Consensus 2 kI~viGtGYVGLv~g~~lA~~-GHeVv~vDid~ 33 (414)
T COG1004 2 KITVIGTGYVGLVTGACLAEL-GHEVVCVDIDE 33 (414)
T ss_pred ceEEECCchHHHHHHHHHHHc-CCeEEEEeCCH
Confidence 478999999999999999998 99999999743
No 362
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=90.67 E-value=0.25 Score=47.49 Aligned_cols=32 Identities=31% Similarity=0.507 Sum_probs=29.7
Q ss_pred cEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417 25 DFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD 57 (385)
Q Consensus 25 DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~ 57 (385)
.+.|||+|..|...|..|+++ |++|.++++..
T Consensus 4 kI~IiG~G~mG~~~A~~L~~~-G~~V~~~~r~~ 35 (341)
T PRK08229 4 RICVLGAGSIGCYLGGRLAAA-GADVTLIGRAR 35 (341)
T ss_pred eEEEECCCHHHHHHHHHHHhc-CCcEEEEecHH
Confidence 489999999999999999998 99999999853
No 363
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=90.57 E-value=0.29 Score=51.50 Aligned_cols=35 Identities=20% Similarity=0.152 Sum_probs=32.2
Q ss_pred cEEEECCCchHHHHHhHhhcCCCceEEEEecCCCCC
Q psy10417 25 DFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDEDR 60 (385)
Q Consensus 25 DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~~ 60 (385)
.++|||+|..|+-+|..|++. |.+|+++|+++..-
T Consensus 314 ~VvIVGgG~iGvE~A~~l~~~-G~eVTLIe~~~~ll 348 (659)
T PTZ00153 314 YMGIVGMGIIGLEFMDIYTAL-GSEVVSFEYSPQLL 348 (659)
T ss_pred ceEEECCCHHHHHHHHHHHhC-CCeEEEEeccCccc
Confidence 699999999999999999998 99999999988653
No 364
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=90.48 E-value=0.29 Score=45.98 Aligned_cols=32 Identities=25% Similarity=0.430 Sum_probs=29.5
Q ss_pred cEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417 25 DFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD 57 (385)
Q Consensus 25 DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~ 57 (385)
-|.|||+|..|..+|..|+++ |.+|.++|+..
T Consensus 5 kIaViGaG~mG~~iA~~la~~-G~~V~l~d~~~ 36 (287)
T PRK08293 5 NVTVAGAGVLGSQIAFQTAFH-GFDVTIYDISD 36 (287)
T ss_pred EEEEECCCHHHHHHHHHHHhc-CCeEEEEeCCH
Confidence 489999999999999999998 99999999754
No 365
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=90.47 E-value=0.28 Score=49.11 Aligned_cols=33 Identities=33% Similarity=0.556 Sum_probs=30.5
Q ss_pred ccEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417 24 YDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD 57 (385)
Q Consensus 24 ~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~ 57 (385)
-.++|||+|.+|+.+|..|+++ |++|.+.|+..
T Consensus 6 k~v~iiG~g~~G~~~A~~l~~~-G~~V~~~d~~~ 38 (450)
T PRK14106 6 KKVLVVGAGVSGLALAKFLKKL-GAKVILTDEKE 38 (450)
T ss_pred CEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCc
Confidence 4689999999999999999998 99999999864
No 366
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=90.35 E-value=0.19 Score=49.32 Aligned_cols=38 Identities=34% Similarity=0.482 Sum_probs=31.5
Q ss_pred cccEEEECCCchHHHHHhHhhcC-C-----------CceEEEEecCCCCC
Q psy10417 23 EYDFIIVGAGVGGCVVAHRLSEV-P-----------SWKVLLIEAGDEDR 60 (385)
Q Consensus 23 ~~DviIVGsG~aG~~~A~~La~~-~-----------G~~VlvLE~G~~~~ 60 (385)
.-+++|||||+.|.=.|-+|++. + ..+|.++|+++..-
T Consensus 155 ~lti~IvGgG~TGVElAgeL~~~~~~l~~~~~~~~~~~~V~LVea~p~IL 204 (405)
T COG1252 155 LLTIVIVGGGPTGVELAGELAERLHRLLKKFRVDPSELRVILVEAGPRIL 204 (405)
T ss_pred eeEEEEECCChhHHHHHHHHHHHHHHHhhhhcCCccccEEEEEccCchhc
Confidence 45799999999999999999863 1 13999999999763
No 367
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=90.30 E-value=0.28 Score=46.09 Aligned_cols=32 Identities=25% Similarity=0.451 Sum_probs=29.5
Q ss_pred cEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417 25 DFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD 57 (385)
Q Consensus 25 DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~ 57 (385)
.|.|||+|..|..+|..|+++ |++|+++|+.+
T Consensus 3 ~V~VIG~G~mG~~iA~~la~~-G~~V~~~d~~~ 34 (288)
T PRK09260 3 KLVVVGAGVMGRGIAYVFAVS-GFQTTLVDIKQ 34 (288)
T ss_pred EEEEECccHHHHHHHHHHHhC-CCcEEEEeCCH
Confidence 378999999999999999998 99999999864
No 368
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=90.30 E-value=0.31 Score=45.79 Aligned_cols=33 Identities=30% Similarity=0.386 Sum_probs=30.3
Q ss_pred cEEEECCCchHHHHHhHhhcCCCceEEEEecCCC
Q psy10417 25 DFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDE 58 (385)
Q Consensus 25 DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~ 58 (385)
-|.|||+|..|...|..|+.+ |++|+++|+.+.
T Consensus 7 ~V~ViGaG~mG~~iA~~~a~~-G~~V~l~d~~~~ 39 (286)
T PRK07819 7 RVGVVGAGQMGAGIAEVCARA-GVDVLVFETTEE 39 (286)
T ss_pred EEEEEcccHHHHHHHHHHHhC-CCEEEEEECCHH
Confidence 588999999999999999998 999999998653
No 369
>PRK04148 hypothetical protein; Provisional
Probab=90.29 E-value=0.29 Score=40.34 Aligned_cols=33 Identities=24% Similarity=0.413 Sum_probs=28.8
Q ss_pred ccEEEECCCchHHHHHhHhhcCCCceEEEEecCCC
Q psy10417 24 YDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDE 58 (385)
Q Consensus 24 ~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~ 58 (385)
-.+++||.| .|..+|..|++. |.+|+.+|..+.
T Consensus 18 ~kileIG~G-fG~~vA~~L~~~-G~~ViaIDi~~~ 50 (134)
T PRK04148 18 KKIVELGIG-FYFKVAKKLKES-GFDVIVIDINEK 50 (134)
T ss_pred CEEEEEEec-CCHHHHHHHHHC-CCEEEEEECCHH
Confidence 358999999 888889999998 999999997653
No 370
>PRK06116 glutathione reductase; Validated
Probab=90.28 E-value=0.32 Score=48.79 Aligned_cols=34 Identities=26% Similarity=0.282 Sum_probs=31.7
Q ss_pred cEEEECCCchHHHHHhHhhcCCCceEEEEecCCCC
Q psy10417 25 DFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDED 59 (385)
Q Consensus 25 DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~ 59 (385)
.++|||+|..|+-+|..|++. |.+|+++++++..
T Consensus 169 ~vvViGgG~~g~E~A~~l~~~-g~~Vtlv~~~~~~ 202 (450)
T PRK06116 169 RVAVVGAGYIAVEFAGVLNGL-GSETHLFVRGDAP 202 (450)
T ss_pred eEEEECCCHHHHHHHHHHHHc-CCeEEEEecCCCC
Confidence 799999999999999999998 9999999998754
No 371
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=90.26 E-value=0.33 Score=49.01 Aligned_cols=35 Identities=34% Similarity=0.513 Sum_probs=32.0
Q ss_pred cEEEECCCchHHHHHhHhhcCCCceEEEEecCCCCC
Q psy10417 25 DFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDEDR 60 (385)
Q Consensus 25 DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~~ 60 (385)
.++|||+|..|+-+|..|++. |.+|+++|+++...
T Consensus 179 ~vvVIGgG~ig~E~A~~l~~~-g~~Vtli~~~~~~l 213 (466)
T PRK07845 179 HLIVVGSGVTGAEFASAYTEL-GVKVTLVSSRDRVL 213 (466)
T ss_pred eEEEECCCHHHHHHHHHHHHc-CCeEEEEEcCCcCC
Confidence 689999999999999999998 99999999987653
No 372
>KOG3923|consensus
Probab=90.09 E-value=0.32 Score=45.28 Aligned_cols=33 Identities=33% Similarity=0.404 Sum_probs=26.3
Q ss_pred cccEEEECCCchHHHHHhHhhcC------CCceEEEEec
Q psy10417 23 EYDFIIVGAGVGGCVVAHRLSEV------PSWKVLLIEA 55 (385)
Q Consensus 23 ~~DviIVGsG~aG~~~A~~La~~------~G~~VlvLE~ 55 (385)
..+++|||+|..||++|..+.+. |-.+|.|++-
T Consensus 3 ~~~iaViGaGVIGlsTA~~i~~~~~~~~ip~~~vtv~~D 41 (342)
T KOG3923|consen 3 TPRIAVIGAGVIGLSTALCILELYHSVLIPVAKVTVISD 41 (342)
T ss_pred CccEEEEcCCeechhHHHHHHHhhhhccCCcceEEEecC
Confidence 45899999999999999776662 4468888874
No 373
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=90.00 E-value=0.35 Score=43.00 Aligned_cols=31 Identities=23% Similarity=0.238 Sum_probs=28.5
Q ss_pred ccEEEECCCchHHHHHhHhhcCCCceEEEEec
Q psy10417 24 YDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEA 55 (385)
Q Consensus 24 ~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~ 55 (385)
--++|||+|-.|...|..|.++ |.+|+|+++
T Consensus 11 k~vLVIGgG~va~~ka~~Ll~~-ga~V~VIs~ 41 (202)
T PRK06718 11 KRVVIVGGGKVAGRRAITLLKY-GAHIVVISP 41 (202)
T ss_pred CEEEEECCCHHHHHHHHHHHHC-CCeEEEEcC
Confidence 3689999999999999999998 999999975
No 374
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=89.97 E-value=0.32 Score=50.24 Aligned_cols=35 Identities=23% Similarity=0.272 Sum_probs=31.8
Q ss_pred ccEEEECCCchHHHHHhHhhcCCCceEEEEecCCCC
Q psy10417 24 YDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDED 59 (385)
Q Consensus 24 ~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~ 59 (385)
-.++|||+|..|+-+|..|++. |.+|+++++++..
T Consensus 144 ~~VvVIGgG~~g~E~A~~L~~~-g~~Vtli~~~~~~ 178 (555)
T TIGR03143 144 MDVFVIGGGFAAAEEAVFLTRY-ASKVTVIVREPDF 178 (555)
T ss_pred CEEEEECCCHHHHHHHHHHHcc-CCEEEEEEeCCcc
Confidence 3799999999999999999998 9999999998753
No 375
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=89.95 E-value=0.29 Score=38.39 Aligned_cols=33 Identities=27% Similarity=0.265 Sum_probs=29.2
Q ss_pred cccEEEECCCchHHHHHhHhhcCCCceEEEEecC
Q psy10417 23 EYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAG 56 (385)
Q Consensus 23 ~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G 56 (385)
.-.++|||+|..|..-+..|.+. |.+|+|+-.-
T Consensus 7 ~~~vlVvGgG~va~~k~~~Ll~~-gA~v~vis~~ 39 (103)
T PF13241_consen 7 GKRVLVVGGGPVAARKARLLLEA-GAKVTVISPE 39 (103)
T ss_dssp T-EEEEEEESHHHHHHHHHHCCC-TBEEEEEESS
T ss_pred CCEEEEECCCHHHHHHHHHHHhC-CCEEEEECCc
Confidence 34689999999999999999998 9999999864
No 376
>PTZ00058 glutathione reductase; Provisional
Probab=89.87 E-value=0.32 Score=50.20 Aligned_cols=35 Identities=11% Similarity=0.154 Sum_probs=32.1
Q ss_pred ccEEEECCCchHHHHHhHhhcCCCceEEEEecCCCC
Q psy10417 24 YDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDED 59 (385)
Q Consensus 24 ~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~ 59 (385)
-.++|||+|..|+-+|..|++. |.+|.++|+++..
T Consensus 238 k~VvIIGgG~iGlE~A~~l~~~-G~~Vtli~~~~~i 272 (561)
T PTZ00058 238 KRIGIAGSGYIAVELINVVNRL-GAESYIFARGNRL 272 (561)
T ss_pred CEEEEECCcHHHHHHHHHHHHc-CCcEEEEEecccc
Confidence 3699999999999999999998 9999999998754
No 377
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=89.87 E-value=0.36 Score=47.15 Aligned_cols=32 Identities=31% Similarity=0.557 Sum_probs=29.6
Q ss_pred cEEEECCCchHHHHHhHhhcCCC-ceEEEEecCC
Q psy10417 25 DFIIVGAGVGGCVVAHRLSEVPS-WKVLLIEAGD 57 (385)
Q Consensus 25 DviIVGsG~aG~~~A~~La~~~G-~~VlvLE~G~ 57 (385)
+++|||+|-.|.++|+.||++ | .+|++.+|..
T Consensus 3 ~ilviGaG~Vg~~va~~la~~-~d~~V~iAdRs~ 35 (389)
T COG1748 3 KILVIGAGGVGSVVAHKLAQN-GDGEVTIADRSK 35 (389)
T ss_pred cEEEECCchhHHHHHHHHHhC-CCceEEEEeCCH
Confidence 689999999999999999998 7 8999999963
No 378
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=89.85 E-value=0.37 Score=48.15 Aligned_cols=35 Identities=26% Similarity=0.256 Sum_probs=32.1
Q ss_pred cEEEECCCchHHHHHhHhhcCCCceEEEEecCCCCC
Q psy10417 25 DFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDEDR 60 (385)
Q Consensus 25 DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~~ 60 (385)
.++|||+|..|+-+|..|++. |.+|.++|+++...
T Consensus 160 ~v~ViGgG~~g~E~A~~l~~~-g~~Vtli~~~~~~l 194 (441)
T PRK08010 160 HLGILGGGYIGVEFASMFANF-GSKVTILEAASLFL 194 (441)
T ss_pred eEEEECCCHHHHHHHHHHHHC-CCeEEEEecCCCCC
Confidence 799999999999999999998 99999999987553
No 379
>PLN02507 glutathione reductase
Probab=89.82 E-value=0.35 Score=49.28 Aligned_cols=34 Identities=15% Similarity=0.069 Sum_probs=31.5
Q ss_pred cEEEECCCchHHHHHhHhhcCCCceEEEEecCCCC
Q psy10417 25 DFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDED 59 (385)
Q Consensus 25 DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~ 59 (385)
.++|||+|..|+-+|..|++. |.+|.|+|+++..
T Consensus 205 ~vvVIGgG~ig~E~A~~l~~~-G~~Vtli~~~~~~ 238 (499)
T PLN02507 205 RAVVLGGGYIAVEFASIWRGM-GATVDLFFRKELP 238 (499)
T ss_pred eEEEECCcHHHHHHHHHHHHc-CCeEEEEEecCCc
Confidence 699999999999999999998 9999999998754
No 380
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=89.76 E-value=0.37 Score=42.77 Aligned_cols=34 Identities=26% Similarity=0.372 Sum_probs=30.4
Q ss_pred CcccEEEECCCchHHHHHhHhhcCCCc-eEEEEecC
Q psy10417 22 DEYDFIIVGAGVGGCVVAHRLSEVPSW-KVLLIEAG 56 (385)
Q Consensus 22 ~~~DviIVGsG~aG~~~A~~La~~~G~-~VlvLE~G 56 (385)
....|+|||+|..|+.+|..|++. |. +++++|..
T Consensus 20 ~~~~V~IvG~GglGs~ia~~La~~-Gvg~i~lvD~D 54 (200)
T TIGR02354 20 EQATVAICGLGGLGSNVAINLARA-GIGKLILVDFD 54 (200)
T ss_pred hCCcEEEECcCHHHHHHHHHHHHc-CCCEEEEECCC
Confidence 346799999999999999999998 98 69999975
No 381
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=89.74 E-value=0.39 Score=40.83 Aligned_cols=30 Identities=20% Similarity=0.200 Sum_probs=27.5
Q ss_pred ccEEEECCCchHHHHHhHhhcCCCceEEEEe
Q psy10417 24 YDFIIVGAGVGGCVVAHRLSEVPSWKVLLIE 54 (385)
Q Consensus 24 ~DviIVGsG~aG~~~A~~La~~~G~~VlvLE 54 (385)
--++|||+|..|.--|..|.+. |.+|+|+.
T Consensus 14 ~~vlVvGGG~va~rka~~Ll~~-ga~V~VIs 43 (157)
T PRK06719 14 KVVVIIGGGKIAYRKASGLKDT-GAFVTVVS 43 (157)
T ss_pred CEEEEECCCHHHHHHHHHHHhC-CCEEEEEc
Confidence 3589999999999999999998 99999994
No 382
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=89.38 E-value=0.4 Score=39.58 Aligned_cols=33 Identities=21% Similarity=0.358 Sum_probs=29.2
Q ss_pred cccEEEECCCchHHHHHhHhhcCCCce-EEEEecC
Q psy10417 23 EYDFIIVGAGVGGCVVAHRLSEVPSWK-VLLIEAG 56 (385)
Q Consensus 23 ~~DviIVGsG~aG~~~A~~La~~~G~~-VlvLE~G 56 (385)
.--++|||+|-+|-.+|..|++. |.+ |.|+-|-
T Consensus 12 ~~~vlviGaGg~ar~v~~~L~~~-g~~~i~i~nRt 45 (135)
T PF01488_consen 12 GKRVLVIGAGGAARAVAAALAAL-GAKEITIVNRT 45 (135)
T ss_dssp TSEEEEESSSHHHHHHHHHHHHT-TSSEEEEEESS
T ss_pred CCEEEEECCHHHHHHHHHHHHHc-CCCEEEEEECC
Confidence 44789999999999999999998 776 9999874
No 383
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=89.20 E-value=0.47 Score=44.65 Aligned_cols=32 Identities=28% Similarity=0.390 Sum_probs=29.6
Q ss_pred cEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417 25 DFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD 57 (385)
Q Consensus 25 DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~ 57 (385)
.|.|||+|..|..+|..|+++ |.+|++.|+..
T Consensus 6 kI~vIGaG~mG~~iA~~la~~-G~~V~l~d~~~ 37 (292)
T PRK07530 6 KVGVIGAGQMGNGIAHVCALA-GYDVLLNDVSA 37 (292)
T ss_pred EEEEECCcHHHHHHHHHHHHC-CCeEEEEeCCH
Confidence 489999999999999999998 99999999754
No 384
>PLN02546 glutathione reductase
Probab=89.18 E-value=0.42 Score=49.39 Aligned_cols=34 Identities=18% Similarity=0.120 Sum_probs=31.6
Q ss_pred cEEEECCCchHHHHHhHhhcCCCceEEEEecCCCC
Q psy10417 25 DFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDED 59 (385)
Q Consensus 25 DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~ 59 (385)
.++|||+|..|+-+|..|++. |.+|.|+|+++..
T Consensus 254 ~V~VIGgG~iGvE~A~~L~~~-g~~Vtlv~~~~~i 287 (558)
T PLN02546 254 KIAIVGGGYIALEFAGIFNGL-KSDVHVFIRQKKV 287 (558)
T ss_pred eEEEECCCHHHHHHHHHHHhc-CCeEEEEEecccc
Confidence 799999999999999999998 9999999998754
No 385
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=89.17 E-value=0.42 Score=45.00 Aligned_cols=32 Identities=22% Similarity=0.442 Sum_probs=29.4
Q ss_pred cEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417 25 DFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD 57 (385)
Q Consensus 25 DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~ 57 (385)
-|.|||+|..|..+|..|+.+ |.+|+++|+.+
T Consensus 5 ~I~ViGaG~mG~~iA~~la~~-G~~V~l~d~~~ 36 (291)
T PRK06035 5 VIGVVGSGVMGQGIAQVFART-GYDVTIVDVSE 36 (291)
T ss_pred EEEEECccHHHHHHHHHHHhc-CCeEEEEeCCH
Confidence 488999999999999999998 99999999754
No 386
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=88.94 E-value=0.43 Score=45.69 Aligned_cols=32 Identities=31% Similarity=0.303 Sum_probs=29.2
Q ss_pred cEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417 25 DFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD 57 (385)
Q Consensus 25 DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~ 57 (385)
.+.|||+|..|...|..|+++ |.+|.++.|..
T Consensus 2 kI~IiGaGa~G~ala~~L~~~-g~~V~l~~r~~ 33 (326)
T PRK14620 2 KISILGAGSFGTAIAIALSSK-KISVNLWGRNH 33 (326)
T ss_pred EEEEECcCHHHHHHHHHHHHC-CCeEEEEecCH
Confidence 378999999999999999998 99999999843
No 387
>PRK13748 putative mercuric reductase; Provisional
Probab=88.85 E-value=0.43 Score=49.27 Aligned_cols=32 Identities=16% Similarity=0.317 Sum_probs=30.1
Q ss_pred cEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417 25 DFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD 57 (385)
Q Consensus 25 DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~ 57 (385)
.++|||+|..|+-+|..|++. |.+|.|+++..
T Consensus 272 ~vvViGgG~ig~E~A~~l~~~-g~~Vtli~~~~ 303 (561)
T PRK13748 272 RLAVIGSSVVALELAQAFARL-GSKVTILARST 303 (561)
T ss_pred eEEEECCCHHHHHHHHHHHHc-CCEEEEEecCc
Confidence 699999999999999999998 99999999864
No 388
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=88.77 E-value=0.47 Score=45.76 Aligned_cols=36 Identities=31% Similarity=0.408 Sum_probs=31.8
Q ss_pred CCcccEEEECCCchHHHHHhHhhcCCCc-eEEEEecCC
Q psy10417 21 LDEYDFIIVGAGVGGCVVAHRLSEVPSW-KVLLIEAGD 57 (385)
Q Consensus 21 ~~~~DviIVGsG~aG~~~A~~La~~~G~-~VlvLE~G~ 57 (385)
....-|+|||+|..|+.+|..|+.+ |. ++.++|...
T Consensus 22 L~~~~VlVvG~GglGs~va~~La~a-Gvg~i~lvD~D~ 58 (339)
T PRK07688 22 LREKHVLIIGAGALGTANAEMLVRA-GVGKVTIVDRDY 58 (339)
T ss_pred hcCCcEEEECCCHHHHHHHHHHHHc-CCCeEEEEeCCc
Confidence 3456799999999999999999998 88 999999854
No 389
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=88.75 E-value=0.44 Score=45.93 Aligned_cols=34 Identities=29% Similarity=0.373 Sum_probs=30.6
Q ss_pred cccEEEECCCchHHHHHhHhhcCCCc-eEEEEecCC
Q psy10417 23 EYDFIIVGAGVGGCVVAHRLSEVPSW-KVLLIEAGD 57 (385)
Q Consensus 23 ~~DviIVGsG~aG~~~A~~La~~~G~-~VlvLE~G~ 57 (385)
+.-|+|||.|..|+.+|..|+.+ |. ++.++|...
T Consensus 24 ~~~VlIiG~GglGs~va~~La~a-Gvg~i~lvD~D~ 58 (338)
T PRK12475 24 EKHVLIVGAGALGAANAEALVRA-GIGKLTIADRDY 58 (338)
T ss_pred CCcEEEECCCHHHHHHHHHHHHc-CCCEEEEEcCCc
Confidence 45799999999999999999998 87 899999865
No 390
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=88.59 E-value=0.47 Score=39.08 Aligned_cols=34 Identities=29% Similarity=0.387 Sum_probs=29.3
Q ss_pred ccEEEECCCchHHHHHhHhhcCCCc-eEEEEecCCC
Q psy10417 24 YDFIIVGAGVGGCVVAHRLSEVPSW-KVLLIEAGDE 58 (385)
Q Consensus 24 ~DviIVGsG~aG~~~A~~La~~~G~-~VlvLE~G~~ 58 (385)
.-|+|||+|..|+.+|..|+.. |. ++.++|....
T Consensus 3 ~~v~iiG~G~vGs~va~~L~~~-Gv~~i~lvD~d~v 37 (135)
T PF00899_consen 3 KRVLIIGAGGVGSEVAKNLARS-GVGKITLVDDDIV 37 (135)
T ss_dssp -EEEEESTSHHHHHHHHHHHHH-TTSEEEEEESSBB
T ss_pred CEEEEECcCHHHHHHHHHHHHh-CCCceeecCCcce
Confidence 4589999999999999999998 87 7999997643
No 391
>PRK14694 putative mercuric reductase; Provisional
Probab=88.56 E-value=0.52 Score=47.54 Aligned_cols=32 Identities=16% Similarity=0.349 Sum_probs=29.9
Q ss_pred cEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417 25 DFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD 57 (385)
Q Consensus 25 DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~ 57 (385)
.++|||+|..|+-+|..|++. |.+|++++++.
T Consensus 180 ~vvViG~G~~G~E~A~~l~~~-g~~Vtlv~~~~ 211 (468)
T PRK14694 180 RLLVIGASVVALELAQAFARL-GSRVTVLARSR 211 (468)
T ss_pred eEEEECCCHHHHHHHHHHHHc-CCeEEEEECCC
Confidence 699999999999999999998 99999999864
No 392
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=88.45 E-value=0.45 Score=46.05 Aligned_cols=32 Identities=22% Similarity=0.233 Sum_probs=28.9
Q ss_pred cEEEECCCchHHHHHhHhhcCCCce-EEEEecCC
Q psy10417 25 DFIIVGAGVGGCVVAHRLSEVPSWK-VLLIEAGD 57 (385)
Q Consensus 25 DviIVGsG~aG~~~A~~La~~~G~~-VlvLE~G~ 57 (385)
.++|||+|..|+-+|..|++. |.+ |.|+++..
T Consensus 174 ~vvViG~G~~g~e~A~~l~~~-g~~~Vtvi~~~~ 206 (352)
T PRK12770 174 KVVVVGAGLTAVDAALEAVLL-GAEKVYLAYRRT 206 (352)
T ss_pred EEEEECCCHHHHHHHHHHHHc-CCCeEEEEeecc
Confidence 699999999999999999987 886 99999764
No 393
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=88.44 E-value=0.46 Score=44.47 Aligned_cols=32 Identities=22% Similarity=0.443 Sum_probs=29.4
Q ss_pred cEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417 25 DFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD 57 (385)
Q Consensus 25 DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~ 57 (385)
.+.|||+|..|..+|..|+++ |.+|+++|..+
T Consensus 5 kI~VIG~G~mG~~ia~~la~~-g~~V~~~d~~~ 36 (282)
T PRK05808 5 KIGVIGAGTMGNGIAQVCAVA-GYDVVMVDISD 36 (282)
T ss_pred EEEEEccCHHHHHHHHHHHHC-CCceEEEeCCH
Confidence 489999999999999999998 99999999754
No 394
>PRK14727 putative mercuric reductase; Provisional
Probab=88.31 E-value=0.5 Score=47.88 Aligned_cols=32 Identities=13% Similarity=0.336 Sum_probs=29.8
Q ss_pred cEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417 25 DFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD 57 (385)
Q Consensus 25 DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~ 57 (385)
.++|||+|..|+-+|..|++. |.+|+++++..
T Consensus 190 ~vvVIGgG~iG~E~A~~l~~~-G~~Vtlv~~~~ 221 (479)
T PRK14727 190 SLTVIGSSVVAAEIAQAYARL-GSRVTILARST 221 (479)
T ss_pred eEEEECCCHHHHHHHHHHHHc-CCEEEEEEcCC
Confidence 699999999999999999998 99999999864
No 395
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=88.27 E-value=0.56 Score=38.97 Aligned_cols=31 Identities=29% Similarity=0.409 Sum_probs=28.1
Q ss_pred EEEECCCchHHHHHhHhhcCCCc-eEEEEecCC
Q psy10417 26 FIIVGAGVGGCVVAHRLSEVPSW-KVLLIEAGD 57 (385)
Q Consensus 26 viIVGsG~aG~~~A~~La~~~G~-~VlvLE~G~ 57 (385)
|+|||.|..|+.+|..|+.. |. ++.++|...
T Consensus 2 VliiG~GglGs~ia~~L~~~-Gv~~i~ivD~d~ 33 (143)
T cd01483 2 VLLVGLGGLGSEIALNLARS-GVGKITLIDFDT 33 (143)
T ss_pred EEEECCCHHHHHHHHHHHHC-CCCEEEEEcCCC
Confidence 78999999999999999998 87 799999754
No 396
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=88.27 E-value=0.53 Score=41.94 Aligned_cols=30 Identities=20% Similarity=0.220 Sum_probs=28.2
Q ss_pred cEEEECCCchHHHHHhHhhcCCCceEEEEec
Q psy10417 25 DFIIVGAGVGGCVVAHRLSEVPSWKVLLIEA 55 (385)
Q Consensus 25 DviIVGsG~aG~~~A~~La~~~G~~VlvLE~ 55 (385)
-|+|||+|..|..-|..|.+. |.+|+|+..
T Consensus 11 ~vlVvGgG~va~rk~~~Ll~~-ga~VtVvsp 40 (205)
T TIGR01470 11 AVLVVGGGDVALRKARLLLKA-GAQLRVIAE 40 (205)
T ss_pred eEEEECcCHHHHHHHHHHHHC-CCEEEEEcC
Confidence 689999999999999999998 999999975
No 397
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=88.25 E-value=0.6 Score=44.74 Aligned_cols=32 Identities=22% Similarity=0.195 Sum_probs=29.6
Q ss_pred cEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417 25 DFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD 57 (385)
Q Consensus 25 DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~ 57 (385)
.+.|||+|..|...|..|+++ |++|.+++|..
T Consensus 6 ~I~iIG~G~mG~~ia~~L~~~-G~~V~~~~r~~ 37 (328)
T PRK14618 6 RVAVLGAGAWGTALAVLAASK-GVPVRLWARRP 37 (328)
T ss_pred eEEEECcCHHHHHHHHHHHHC-CCeEEEEeCCH
Confidence 589999999999999999998 99999999853
No 398
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=88.00 E-value=0.58 Score=41.50 Aligned_cols=32 Identities=22% Similarity=0.282 Sum_probs=29.3
Q ss_pred ccEEEECCCchHHHHHhHhhcCCCceEEEEecC
Q psy10417 24 YDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAG 56 (385)
Q Consensus 24 ~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G 56 (385)
--++|+|.|-.|..+|..|.+. |.+|++.|+.
T Consensus 29 k~v~I~G~G~vG~~~A~~L~~~-G~~Vvv~D~~ 60 (200)
T cd01075 29 KTVAVQGLGKVGYKLAEHLLEE-GAKLIVADIN 60 (200)
T ss_pred CEEEEECCCHHHHHHHHHHHHC-CCEEEEEcCC
Confidence 3599999999999999999998 9999999865
No 399
>PTZ00052 thioredoxin reductase; Provisional
Probab=87.85 E-value=0.51 Score=48.08 Aligned_cols=31 Identities=29% Similarity=0.314 Sum_probs=29.3
Q ss_pred cEEEECCCchHHHHHhHhhcCCCceEEEEecC
Q psy10417 25 DFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAG 56 (385)
Q Consensus 25 DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G 56 (385)
.++|||+|..|+-+|..|++. |.+|.|+++.
T Consensus 184 ~vvIIGgG~iG~E~A~~l~~~-G~~Vtli~~~ 214 (499)
T PTZ00052 184 KTLIVGASYIGLETAGFLNEL-GFDVTVAVRS 214 (499)
T ss_pred eEEEECCCHHHHHHHHHHHHc-CCcEEEEEcC
Confidence 699999999999999999998 9999999974
No 400
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=87.84 E-value=0.78 Score=39.50 Aligned_cols=35 Identities=20% Similarity=0.159 Sum_probs=30.5
Q ss_pred CCcccEEEECCCc-hHHHHHhHhhcCCCceEEEEecC
Q psy10417 21 LDEYDFIIVGAGV-GGCVVAHRLSEVPSWKVLLIEAG 56 (385)
Q Consensus 21 ~~~~DviIVGsG~-aG~~~A~~La~~~G~~VlvLE~G 56 (385)
.....++|||+|- +|..+|..|.+. |.+|.++.|-
T Consensus 42 l~gk~vlViG~G~~~G~~~a~~L~~~-g~~V~v~~r~ 77 (168)
T cd01080 42 LAGKKVVVVGRSNIVGKPLAALLLNR-NATVTVCHSK 77 (168)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHhhC-CCEEEEEECC
Confidence 4567899999995 699999999998 9999999975
No 401
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=87.81 E-value=0.51 Score=44.82 Aligned_cols=33 Identities=27% Similarity=0.500 Sum_probs=29.7
Q ss_pred cEEEECCCchHHHHHhHhhcCCCceEEEEecCCC
Q psy10417 25 DFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDE 58 (385)
Q Consensus 25 DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~ 58 (385)
-+.|+|+|..|+..|++|+++ |..|+++=|...
T Consensus 2 kI~IlGaGAvG~l~g~~L~~~-g~~V~~~~R~~~ 34 (307)
T COG1893 2 KILILGAGAIGSLLGARLAKA-GHDVTLLVRSRR 34 (307)
T ss_pred eEEEECCcHHHHHHHHHHHhC-CCeEEEEecHHH
Confidence 378999999999999999999 889999988764
No 402
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=87.76 E-value=0.59 Score=46.50 Aligned_cols=35 Identities=37% Similarity=0.619 Sum_probs=30.2
Q ss_pred cEEEECCCchHHHHHhHhhcC-------------CCceEEEEecCCCC
Q psy10417 25 DFIIVGAGVGGCVVAHRLSEV-------------PSWKVLLIEAGDED 59 (385)
Q Consensus 25 DviIVGsG~aG~~~A~~La~~-------------~G~~VlvLE~G~~~ 59 (385)
.++|||+|..|+-+|.+|++. ++.+|+++|+++..
T Consensus 175 ~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~l 222 (424)
T PTZ00318 175 HFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSEV 222 (424)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCCCcc
Confidence 799999999999999999861 27899999998754
No 403
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=87.61 E-value=0.77 Score=44.70 Aligned_cols=40 Identities=25% Similarity=0.272 Sum_probs=35.1
Q ss_pred CCCcccEEEECCCchHHHHHhHhhcCCCceEEEEecCCCC
Q psy10417 20 LLDEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDED 59 (385)
Q Consensus 20 ~~~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~ 59 (385)
+.+.+|+|.||-|++-+.+|..|.+..+.+++.|||-+..
T Consensus 2 ~~~~~DliGIG~GPfNL~LA~ll~e~~~~~~lFLerkp~F 41 (436)
T COG3486 2 MAEVLDLIGIGIGPFNLSLAALLEEHSGLKSLFLERKPDF 41 (436)
T ss_pred CCcceeeEEEccCchHHHHHHHhccccCcceEEEecCCCC
Confidence 3567999999999999999999999856899999997654
No 404
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=87.55 E-value=0.64 Score=47.21 Aligned_cols=35 Identities=20% Similarity=0.073 Sum_probs=29.3
Q ss_pred cEEEECCCchHHHHHhHh---hcCCCceEEEEecCCCCC
Q psy10417 25 DFIIVGAGVGGCVVAHRL---SEVPSWKVLLIEAGDEDR 60 (385)
Q Consensus 25 DviIVGsG~aG~~~A~~L---a~~~G~~VlvLE~G~~~~ 60 (385)
.++|||+|..|+-+|..+ .+. |.+|+|+|+++...
T Consensus 189 ~vvIIGgG~iG~E~A~~~~~l~~~-G~~Vtli~~~~~il 226 (486)
T TIGR01423 189 RVLTVGGGFISVEFAGIFNAYKPR-GGKVTLCYRNNMIL 226 (486)
T ss_pred eEEEECCCHHHHHHHHHHHHhccC-CCeEEEEecCCccc
Confidence 699999999999999655 445 89999999998653
No 405
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=87.54 E-value=0.66 Score=40.17 Aligned_cols=31 Identities=26% Similarity=0.227 Sum_probs=28.1
Q ss_pred EEEECCCchHHHHHhHhhcCCCc-eEEEEecCC
Q psy10417 26 FIIVGAGVGGCVVAHRLSEVPSW-KVLLIEAGD 57 (385)
Q Consensus 26 viIVGsG~aG~~~A~~La~~~G~-~VlvLE~G~ 57 (385)
|+|||.|..|+.+|..|++. |. ++.++|...
T Consensus 2 VlViG~GglGs~ia~~La~~-Gvg~i~lvD~D~ 33 (174)
T cd01487 2 VGIAGAGGLGSNIAVLLARS-GVGNLKLVDFDV 33 (174)
T ss_pred EEEECcCHHHHHHHHHHHHc-CCCeEEEEeCCE
Confidence 78999999999999999998 87 599999754
No 406
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=87.30 E-value=0.65 Score=44.10 Aligned_cols=32 Identities=28% Similarity=0.487 Sum_probs=29.2
Q ss_pred cEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417 25 DFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD 57 (385)
Q Consensus 25 DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~ 57 (385)
.|.|||+|..|..+|..|+++ |++|+++++..
T Consensus 6 ~I~vIGaG~mG~~iA~~l~~~-g~~V~~~d~~~ 37 (311)
T PRK06130 6 NLAIIGAGTMGSGIAALFARK-GLQVVLIDVME 37 (311)
T ss_pred EEEEECCCHHHHHHHHHHHhC-CCeEEEEECCH
Confidence 489999999999999999998 99999999754
No 407
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=87.21 E-value=0.67 Score=44.00 Aligned_cols=31 Identities=29% Similarity=0.531 Sum_probs=28.0
Q ss_pred cEEEECCCchHHHHHhHhhcCCCc-eEEEEecC
Q psy10417 25 DFIIVGAGVGGCVVAHRLSEVPSW-KVLLIEAG 56 (385)
Q Consensus 25 DviIVGsG~aG~~~A~~La~~~G~-~VlvLE~G 56 (385)
-+.|||+|..|+.+|..|+.. |. +|+++|.-
T Consensus 3 KV~VIGaG~vG~~iA~~la~~-g~~~VvlvDi~ 34 (305)
T TIGR01763 3 KISVIGAGFVGATTAFRLAEK-ELADLVLLDVV 34 (305)
T ss_pred EEEEECcCHHHHHHHHHHHHc-CCCeEEEEeCC
Confidence 478999999999999999997 76 89999983
No 408
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=87.20 E-value=0.64 Score=45.40 Aligned_cols=33 Identities=24% Similarity=0.340 Sum_probs=30.0
Q ss_pred cccEEEECCCchHHHHHhHhhcCCCceEEEEecC
Q psy10417 23 EYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAG 56 (385)
Q Consensus 23 ~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G 56 (385)
..+++|||+|.+|..+|..|... |.+|.++++.
T Consensus 167 ~~~VlViGaG~vG~~aa~~a~~l-Ga~V~v~d~~ 199 (370)
T TIGR00518 167 PGDVTIIGGGVVGTNAAKMANGL-GATVTILDIN 199 (370)
T ss_pred CceEEEEcCCHHHHHHHHHHHHC-CCeEEEEECC
Confidence 45699999999999999999998 9999999975
No 409
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=87.08 E-value=0.7 Score=45.82 Aligned_cols=32 Identities=19% Similarity=0.346 Sum_probs=29.5
Q ss_pred cEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417 25 DFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD 57 (385)
Q Consensus 25 DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~ 57 (385)
.|.|||.|..|+..|..|+++ |++|+++++..
T Consensus 2 kI~vIGlG~~G~~lA~~La~~-G~~V~~~d~~~ 33 (411)
T TIGR03026 2 KIAVIGLGYVGLPLAALLADL-GHEVTGVDIDQ 33 (411)
T ss_pred EEEEECCCchhHHHHHHHHhc-CCeEEEEECCH
Confidence 478999999999999999998 99999999864
No 410
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=87.04 E-value=0.7 Score=43.54 Aligned_cols=32 Identities=25% Similarity=0.352 Sum_probs=29.4
Q ss_pred cEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417 25 DFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD 57 (385)
Q Consensus 25 DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~ 57 (385)
-|.|||+|..|..+|..|+.+ |.+|.+.|+..
T Consensus 6 ~V~vIG~G~mG~~iA~~l~~~-G~~V~~~d~~~ 37 (295)
T PLN02545 6 KVGVVGAGQMGSGIAQLAAAA-GMDVWLLDSDP 37 (295)
T ss_pred EEEEECCCHHHHHHHHHHHhc-CCeEEEEeCCH
Confidence 389999999999999999998 99999999754
No 411
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=86.84 E-value=0.74 Score=43.78 Aligned_cols=32 Identities=28% Similarity=0.377 Sum_probs=28.9
Q ss_pred cEEEECCCchHHHHHhHhhcCCC--ceEEEEecCC
Q psy10417 25 DFIIVGAGVGGCVVAHRLSEVPS--WKVLLIEAGD 57 (385)
Q Consensus 25 DviIVGsG~aG~~~A~~La~~~G--~~VlvLE~G~ 57 (385)
.+.|||+|..|+++|..|+.+ | ..|.++|+..
T Consensus 2 kI~IIGaG~VG~~~a~~l~~~-g~~~ev~l~D~~~ 35 (308)
T cd05292 2 KVAIVGAGFVGSTTAYALLLR-GLASEIVLVDINK 35 (308)
T ss_pred EEEEECCCHHHHHHHHHHHHc-CCCCEEEEEECCc
Confidence 489999999999999999998 8 5899999865
No 412
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=86.79 E-value=0.74 Score=40.87 Aligned_cols=36 Identities=22% Similarity=0.344 Sum_probs=31.6
Q ss_pred CCcccEEEECCCchHHHHHhHhhcCCCc-eEEEEecCC
Q psy10417 21 LDEYDFIIVGAGVGGCVVAHRLSEVPSW-KVLLIEAGD 57 (385)
Q Consensus 21 ~~~~DviIVGsG~aG~~~A~~La~~~G~-~VlvLE~G~ 57 (385)
..+.-|+|||.|..|+.+|..|+.. |. ++.++|...
T Consensus 19 l~~~~VlviG~GglGs~ia~~La~~-Gv~~i~lvD~d~ 55 (202)
T TIGR02356 19 LLNSHVLIIGAGGLGSPAALYLAGA-GVGTIVIVDDDH 55 (202)
T ss_pred hcCCCEEEECCCHHHHHHHHHHHHc-CCCeEEEecCCE
Confidence 4456899999999999999999998 86 899999764
No 413
>PLN02612 phytoene desaturase
Probab=86.70 E-value=1.1 Score=46.41 Aligned_cols=47 Identities=21% Similarity=0.181 Sum_probs=36.1
Q ss_pred ccCCCeEEEeCcEEEEEEEcCCCCeEEEEEEEeCCeEEEEEeCcEEEEcCCC
Q psy10417 265 IDRTNLHVIKNSRVVKIIIDPISKQAKGVELVKNGHKRSVFARKEVIVSSGA 316 (385)
Q Consensus 265 ~~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~~g~~~~i~a~k~VVlAaGa 316 (385)
+++.|.+|++++.|++|..++ ++++++|++.+ |+ .+.++ .||+|+..
T Consensus 318 l~~~G~~I~l~~~V~~I~~~~-~g~v~~v~~~~-G~--~~~ad-~VI~a~p~ 364 (567)
T PLN02612 318 FQSLGGEVRLNSRIKKIELND-DGTVKHFLLTN-GS--VVEGD-VYVSATPV 364 (567)
T ss_pred HHhcCCEEEeCCeeeEEEECC-CCcEEEEEECC-Cc--EEECC-EEEECCCH
Confidence 345799999999999999864 46777887754 43 57885 79999864
No 414
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=86.55 E-value=0.76 Score=43.72 Aligned_cols=32 Identities=25% Similarity=0.303 Sum_probs=29.6
Q ss_pred cEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417 25 DFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD 57 (385)
Q Consensus 25 DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~ 57 (385)
.|.|||+|..|...|..|+++ |..|.++++.+
T Consensus 3 kI~iiG~G~mG~~~a~~L~~~-g~~V~~~~r~~ 34 (325)
T PRK00094 3 KIAVLGAGSWGTALAIVLARN-GHDVTLWARDP 34 (325)
T ss_pred EEEEECCCHHHHHHHHHHHhC-CCEEEEEECCH
Confidence 489999999999999999998 99999999864
No 415
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=86.45 E-value=0.75 Score=45.68 Aligned_cols=33 Identities=15% Similarity=0.245 Sum_probs=30.0
Q ss_pred cEEEECCCchHHHHHhHhhcCCCceEEEEecCCC
Q psy10417 25 DFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDE 58 (385)
Q Consensus 25 DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~ 58 (385)
-+.|||.|..|++.|..|+++ |++|+++|+.+.
T Consensus 5 kI~VIGlG~~G~~~A~~La~~-G~~V~~~D~~~~ 37 (415)
T PRK11064 5 TISVIGLGYIGLPTAAAFASR-QKQVIGVDINQH 37 (415)
T ss_pred EEEEECcchhhHHHHHHHHhC-CCEEEEEeCCHH
Confidence 489999999999999999998 999999997543
No 416
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=86.08 E-value=0.81 Score=42.97 Aligned_cols=33 Identities=24% Similarity=0.424 Sum_probs=29.3
Q ss_pred ccEEEECCCchHHHHHhHhhcCCCc-eEEEEecCC
Q psy10417 24 YDFIIVGAGVGGCVVAHRLSEVPSW-KVLLIEAGD 57 (385)
Q Consensus 24 ~DviIVGsG~aG~~~A~~La~~~G~-~VlvLE~G~ 57 (385)
-.++|||+|.+|.++|+.|++. |. +|.|++|..
T Consensus 128 k~vlIlGaGGaaraia~aL~~~-G~~~I~I~nR~~ 161 (284)
T PRK12549 128 ERVVQLGAGGAGAAVAHALLTL-GVERLTIFDVDP 161 (284)
T ss_pred CEEEEECCcHHHHHHHHHHHHc-CCCEEEEECCCH
Confidence 4699999999999999999998 76 799999853
No 417
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=85.95 E-value=0.93 Score=38.90 Aligned_cols=35 Identities=17% Similarity=0.177 Sum_probs=28.7
Q ss_pred CcccEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417 22 DEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD 57 (385)
Q Consensus 22 ~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~ 57 (385)
...-|+|+|+|.+|.-||.-|... |.+|.++|...
T Consensus 19 ~p~~vvv~G~G~vg~gA~~~~~~l-Ga~v~~~d~~~ 53 (168)
T PF01262_consen 19 PPAKVVVTGAGRVGQGAAEIAKGL-GAEVVVPDERP 53 (168)
T ss_dssp -T-EEEEESTSHHHHHHHHHHHHT-T-EEEEEESSH
T ss_pred CCeEEEEECCCHHHHHHHHHHhHC-CCEEEeccCCH
Confidence 346899999999999999988888 99999999753
No 418
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=85.50 E-value=0.94 Score=43.00 Aligned_cols=34 Identities=24% Similarity=0.232 Sum_probs=30.6
Q ss_pred ccEEEECCCchHHHHHhHhhcCCCceEEEEecCCC
Q psy10417 24 YDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDE 58 (385)
Q Consensus 24 ~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~ 58 (385)
..|.|||+|..|..+|..|+++ |++|.+..|...
T Consensus 5 m~I~iiG~G~~G~~lA~~l~~~-G~~V~~~~r~~~ 38 (308)
T PRK14619 5 KTIAILGAGAWGSTLAGLASAN-GHRVRVWSRRSG 38 (308)
T ss_pred CEEEEECccHHHHHHHHHHHHC-CCEEEEEeCCCC
Confidence 3589999999999999999998 999999998643
No 419
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=85.46 E-value=0.67 Score=42.42 Aligned_cols=37 Identities=22% Similarity=0.311 Sum_probs=30.5
Q ss_pred CCcccEEEECCCchHHHHHhHhhcCC----------CceEEEEecCC
Q psy10417 21 LDEYDFIIVGAGVGGCVVAHRLSEVP----------SWKVLLIEAGD 57 (385)
Q Consensus 21 ~~~~DviIVGsG~aG~~~A~~La~~~----------G~~VlvLE~G~ 57 (385)
.....|+|||+|..|+.+|..||+.. |.+++|+|...
T Consensus 9 ~~~~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D~ 55 (244)
T TIGR03736 9 SRPVSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDDT 55 (244)
T ss_pred hCCCeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEECCCE
Confidence 45678999999999999999999861 23889998654
No 420
>PRK07233 hypothetical protein; Provisional
Probab=85.16 E-value=1.4 Score=43.60 Aligned_cols=53 Identities=21% Similarity=0.253 Sum_probs=38.5
Q ss_pred hccCCCeEEEeCcEEEEEEEcCCCCeEEEEEEEeCCeEEEEEeCcEEEEcCCCcccHHHH
Q psy10417 264 IIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVKNGHKRSVFARKEVIVSSGAFNSPKLL 323 (385)
Q Consensus 264 ~~~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~~g~~~~i~a~k~VVlAaGa~~tp~LL 323 (385)
.+++.|++|+++++|++|..+ +++++++.. + ++ ++.++ .||+|+..-..+.||
T Consensus 207 ~l~~~g~~v~~~~~V~~i~~~--~~~~~~~~~-~-~~--~~~ad-~vI~a~p~~~~~~ll 259 (434)
T PRK07233 207 AIEARGGEIRLGTPVTSVVID--GGGVTGVEV-D-GE--EEDFD-AVISTAPPPILARLV 259 (434)
T ss_pred HHHhcCceEEeCCCeeEEEEc--CCceEEEEe-C-Cc--eEECC-EEEECCCHHHHHhhc
Confidence 445678999999999999987 556665542 2 32 68885 799999875555543
No 421
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=85.13 E-value=0.85 Score=41.29 Aligned_cols=34 Identities=21% Similarity=0.406 Sum_probs=30.0
Q ss_pred ccEEEECCCchHHHHHhHhhcCCCc---eEEEEecCCC
Q psy10417 24 YDFIIVGAGVGGCVVAHRLSEVPSW---KVLLIEAGDE 58 (385)
Q Consensus 24 ~DviIVGsG~aG~~~A~~La~~~G~---~VlvLE~G~~ 58 (385)
--++|+|+|.+|..+|..|++. |. +|.+++|-+.
T Consensus 26 ~rvlvlGAGgAg~aiA~~L~~~-G~~~~~i~ivdr~gl 62 (226)
T cd05311 26 VKIVINGAGAAGIAIARLLLAA-GAKPENIVVVDSKGV 62 (226)
T ss_pred CEEEEECchHHHHHHHHHHHHc-CcCcceEEEEeCCCc
Confidence 4699999999999999999998 86 5999999753
No 422
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=85.03 E-value=1 Score=45.08 Aligned_cols=34 Identities=26% Similarity=0.406 Sum_probs=31.5
Q ss_pred cEEEECCCchHHHHHhHhhcCCCceEEEEecCCCC
Q psy10417 25 DFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDED 59 (385)
Q Consensus 25 DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~ 59 (385)
+|+|||+|.+|.-+|.+|++. |.+|.++=|.+..
T Consensus 177 rV~VIG~GaSA~di~~~l~~~-ga~vt~~qRs~~~ 210 (443)
T COG2072 177 RVLVIGAGASAVDIAPELAEV-GASVTLSQRSPPH 210 (443)
T ss_pred eEEEECCCccHHHHHHHHHhc-CCeeEEEecCCCc
Confidence 799999999999999999998 9999999987644
No 423
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=84.85 E-value=1.1 Score=40.19 Aligned_cols=32 Identities=22% Similarity=0.307 Sum_probs=28.5
Q ss_pred cEEEEC-CCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417 25 DFIIVG-AGVGGCVVAHRLSEVPSWKVLLIEAGD 57 (385)
Q Consensus 25 DviIVG-sG~aG~~~A~~La~~~G~~VlvLE~G~ 57 (385)
.+.||| +|..|.++|..|+++ |.+|.+..+..
T Consensus 2 kI~IIGG~G~mG~ala~~L~~~-G~~V~v~~r~~ 34 (219)
T TIGR01915 2 KIAVLGGTGDQGKGLALRLAKA-GNKIIIGSRDL 34 (219)
T ss_pred EEEEEcCCCHHHHHHHHHHHhC-CCEEEEEEcCH
Confidence 378997 799999999999998 99999998754
No 424
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=84.80 E-value=0.96 Score=42.59 Aligned_cols=32 Identities=16% Similarity=0.279 Sum_probs=28.4
Q ss_pred cEEEECCCchHHHHHhHhhcCCCce-EEEEecCC
Q psy10417 25 DFIIVGAGVGGCVVAHRLSEVPSWK-VLLIEAGD 57 (385)
Q Consensus 25 DviIVGsG~aG~~~A~~La~~~G~~-VlvLE~G~ 57 (385)
-++|+|+|-+|.++|..|++. |.+ |.|+.|..
T Consensus 128 ~vlI~GAGGagrAia~~La~~-G~~~V~I~~R~~ 160 (289)
T PRK12548 128 KLTVIGAGGAATAIQVQCALD-GAKEITIFNIKD 160 (289)
T ss_pred EEEEECCcHHHHHHHHHHHHC-CCCEEEEEeCCc
Confidence 589999999999999999998 876 99998853
No 425
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=84.25 E-value=1.1 Score=44.20 Aligned_cols=36 Identities=19% Similarity=0.145 Sum_probs=31.1
Q ss_pred CcccEEEECCCchHHHHHhHhhcCCCceEEEEecCCC
Q psy10417 22 DEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDE 58 (385)
Q Consensus 22 ~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~ 58 (385)
..-.|+|+|.|..|..+|..|... |.+|+++|..+.
T Consensus 201 ~GktVvViG~G~IG~~va~~ak~~-Ga~ViV~d~d~~ 236 (413)
T cd00401 201 AGKVAVVAGYGDVGKGCAQSLRGQ-GARVIVTEVDPI 236 (413)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEECChh
Confidence 345799999999999999998887 999999998653
No 426
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=84.25 E-value=1.2 Score=40.61 Aligned_cols=36 Identities=22% Similarity=0.385 Sum_probs=30.7
Q ss_pred CcccEEEECCCchHHHHHhHhhcCCCc-eEEEEecCCC
Q psy10417 22 DEYDFIIVGAGVGGCVVAHRLSEVPSW-KVLLIEAGDE 58 (385)
Q Consensus 22 ~~~DviIVGsG~aG~~~A~~La~~~G~-~VlvLE~G~~ 58 (385)
....|+|||.|..|+.+|..|+.. |. ++.++|....
T Consensus 23 ~~~~VlvvG~GglGs~va~~La~~-Gvg~i~lvD~D~v 59 (240)
T TIGR02355 23 KASRVLIVGLGGLGCAASQYLAAA-GVGNLTLLDFDTV 59 (240)
T ss_pred hCCcEEEECcCHHHHHHHHHHHHc-CCCEEEEEeCCcc
Confidence 347899999999999999999998 64 7888887543
No 427
>PRK08328 hypothetical protein; Provisional
Probab=84.05 E-value=1.1 Score=40.58 Aligned_cols=35 Identities=29% Similarity=0.388 Sum_probs=29.9
Q ss_pred CcccEEEECCCchHHHHHhHhhcCCCc-eEEEEecCC
Q psy10417 22 DEYDFIIVGAGVGGCVVAHRLSEVPSW-KVLLIEAGD 57 (385)
Q Consensus 22 ~~~DviIVGsG~aG~~~A~~La~~~G~-~VlvLE~G~ 57 (385)
...-|+|||.|..|+.+|..|+.. |. ++.++|...
T Consensus 26 ~~~~VlIiG~GGlGs~ia~~La~~-Gvg~i~lvD~D~ 61 (231)
T PRK08328 26 KKAKVAVVGVGGLGSPVAYYLAAA-GVGRILLIDEQT 61 (231)
T ss_pred hCCcEEEECCCHHHHHHHHHHHHc-CCCEEEEEcCCc
Confidence 356799999999999999999998 75 788887654
No 428
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=83.98 E-value=1.1 Score=45.53 Aligned_cols=32 Identities=22% Similarity=0.202 Sum_probs=29.5
Q ss_pred cEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417 25 DFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD 57 (385)
Q Consensus 25 DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~ 57 (385)
.|.|||+|..|...|..|+.+ |++|+|.++.+
T Consensus 6 kIavIG~G~MG~~iA~~la~~-G~~V~v~D~~~ 37 (495)
T PRK07531 6 KAACIGGGVIGGGWAARFLLA-GIDVAVFDPHP 37 (495)
T ss_pred EEEEECcCHHHHHHHHHHHhC-CCeEEEEeCCH
Confidence 488999999999999999998 99999999854
No 429
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=83.95 E-value=1.6 Score=32.82 Aligned_cols=34 Identities=26% Similarity=0.346 Sum_probs=29.2
Q ss_pred CcccEEEECCCchHHHHHhHhhcCCCceEEEEec
Q psy10417 22 DEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEA 55 (385)
Q Consensus 22 ~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~ 55 (385)
..-.++|+|+|..|..+|..|.+..+.+|.+.++
T Consensus 22 ~~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r 55 (86)
T cd05191 22 KGKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR 55 (86)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence 3346999999999999999999964678999988
No 430
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=83.95 E-value=1.1 Score=44.95 Aligned_cols=32 Identities=16% Similarity=0.282 Sum_probs=29.2
Q ss_pred cEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417 25 DFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD 57 (385)
Q Consensus 25 DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~ 57 (385)
-++|+|+|..|.++|..|+++ |.+|++.|+..
T Consensus 7 ~v~v~G~g~~G~s~a~~l~~~-G~~V~~~d~~~ 38 (447)
T PRK02472 7 KVLVLGLAKSGYAAAKLLHKL-GANVTVNDGKP 38 (447)
T ss_pred EEEEEeeCHHHHHHHHHHHHC-CCEEEEEcCCC
Confidence 379999999999999999998 99999999764
No 431
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=83.77 E-value=1.2 Score=39.87 Aligned_cols=35 Identities=23% Similarity=0.216 Sum_probs=30.5
Q ss_pred CcccEEEECCCchHHHHHhHhhcCCCc-eEEEEecCC
Q psy10417 22 DEYDFIIVGAGVGGCVVAHRLSEVPSW-KVLLIEAGD 57 (385)
Q Consensus 22 ~~~DviIVGsG~aG~~~A~~La~~~G~-~VlvLE~G~ 57 (385)
...-|+|||+|..|+.+|..|+.. |. ++.++|...
T Consensus 27 ~~~~V~ViG~GglGs~ia~~La~~-Gvg~i~lvD~D~ 62 (212)
T PRK08644 27 KKAKVGIAGAGGLGSNIAVALARS-GVGNLKLVDFDV 62 (212)
T ss_pred hCCCEEEECcCHHHHHHHHHHHHc-CCCeEEEEeCCE
Confidence 456899999999999999999998 87 599999754
No 432
>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A.
Probab=83.55 E-value=1.5 Score=36.39 Aligned_cols=31 Identities=19% Similarity=0.371 Sum_probs=26.2
Q ss_pred EEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417 26 FIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD 57 (385)
Q Consensus 26 viIVGsG~aG~~~A~~La~~~G~~VlvLE~G~ 57 (385)
++|+|+|..+..+|.-++.- |++|+|+|-.+
T Consensus 1 L~I~GaG~va~al~~la~~l-g~~v~v~d~r~ 31 (136)
T PF13478_consen 1 LVIFGAGHVARALARLAALL-GFRVTVVDPRP 31 (136)
T ss_dssp EEEES-STCHHHHHHHHHHC-TEEEEEEES-C
T ss_pred CEEEeCcHHHHHHHHHHHhC-CCEEEEEcCCc
Confidence 48999999999999888888 99999999654
No 433
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=83.54 E-value=1.2 Score=44.74 Aligned_cols=33 Identities=12% Similarity=0.192 Sum_probs=29.5
Q ss_pred ccEEEECCCchHHHHHhHhhcCCCc-eEEEEecCC
Q psy10417 24 YDFIIVGAGVGGCVVAHRLSEVPSW-KVLLIEAGD 57 (385)
Q Consensus 24 ~DviIVGsG~aG~~~A~~La~~~G~-~VlvLE~G~ 57 (385)
=.|+|||+|..|+-+|..|++. |. +|+++++.+
T Consensus 274 ~~VvViGgG~~g~e~A~~l~~~-G~~~Vtlv~~~~ 307 (457)
T PRK11749 274 KRVVVIGGGNTAMDAARTAKRL-GAESVTIVYRRG 307 (457)
T ss_pred CeEEEECCCHHHHHHHHHHHHc-CCCeEEEeeecC
Confidence 3799999999999999999997 87 899999753
No 434
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=83.50 E-value=1.3 Score=41.97 Aligned_cols=32 Identities=31% Similarity=0.474 Sum_probs=28.5
Q ss_pred EEEECCCchHHHHHhHhhcCCC--ceEEEEecCCC
Q psy10417 26 FIIVGAGVGGCVVAHRLSEVPS--WKVLLIEAGDE 58 (385)
Q Consensus 26 viIVGsG~aG~~~A~~La~~~G--~~VlvLE~G~~ 58 (385)
|.|||+|..|.++|+.|+.. | ..|.++++...
T Consensus 3 I~IIGaG~vG~~~a~~l~~~-g~~~ei~l~D~~~~ 36 (306)
T cd05291 3 VVIIGAGHVGSSFAYSLVNQ-GIADELVLIDINEE 36 (306)
T ss_pred EEEECCCHHHHHHHHHHHhc-CCCCEEEEEeCCcc
Confidence 78999999999999999998 7 47999998653
No 435
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=83.50 E-value=1.2 Score=45.43 Aligned_cols=33 Identities=27% Similarity=0.418 Sum_probs=29.8
Q ss_pred cEEEECCCchHHHHHhHhhcCCCceEEEEecCCC
Q psy10417 25 DFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDE 58 (385)
Q Consensus 25 DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~ 58 (385)
-|.|||+|.-|.-+|..|+.+ |+.|.+.|+...
T Consensus 9 ~V~VIGaG~MG~gIA~~la~a-G~~V~l~D~~~e 41 (507)
T PRK08268 9 TVAVIGAGAMGAGIAQVAAQA-GHTVLLYDARAG 41 (507)
T ss_pred EEEEECCCHHHHHHHHHHHhC-CCeEEEEeCCHH
Confidence 388999999999999999998 999999997553
No 436
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=83.46 E-value=1.4 Score=44.97 Aligned_cols=32 Identities=25% Similarity=0.405 Sum_probs=29.7
Q ss_pred cEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417 25 DFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD 57 (385)
Q Consensus 25 DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~ 57 (385)
-|.|||+|.-|.-+|..|+++ |+.|++.|+.+
T Consensus 7 kV~VIGaG~MG~gIA~~la~a-G~~V~l~d~~~ 38 (503)
T TIGR02279 7 TVAVIGAGAMGAGIAQVAASA-GHQVLLYDIRA 38 (503)
T ss_pred EEEEECcCHHHHHHHHHHHhC-CCeEEEEeCCH
Confidence 489999999999999999998 99999999864
No 437
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=83.41 E-value=1.2 Score=44.85 Aligned_cols=33 Identities=18% Similarity=0.298 Sum_probs=28.3
Q ss_pred cEEEECCCchHHHHHhHhhcC-CCceEEEEecCC
Q psy10417 25 DFIIVGAGVGGCVVAHRLSEV-PSWKVLLIEAGD 57 (385)
Q Consensus 25 DviIVGsG~aG~~~A~~La~~-~G~~VlvLE~G~ 57 (385)
.+.|||.|..|+++|..||++ .|.+|+.+|...
T Consensus 3 ~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~ 36 (473)
T PLN02353 3 KICCIGAGYVGGPTMAVIALKCPDIEVVVVDISV 36 (473)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCH
Confidence 489999999999999999987 258899999643
No 438
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=83.35 E-value=1.2 Score=47.51 Aligned_cols=32 Identities=19% Similarity=0.302 Sum_probs=29.8
Q ss_pred cEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417 25 DFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD 57 (385)
Q Consensus 25 DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~ 57 (385)
-|.|||+|..|.-+|..+|.+ |++|+++|...
T Consensus 315 ~v~ViGaG~mG~gIA~~~a~~-G~~V~l~d~~~ 346 (715)
T PRK11730 315 QAAVLGAGIMGGGIAYQSASK-GVPVIMKDINQ 346 (715)
T ss_pred eEEEECCchhHHHHHHHHHhC-CCeEEEEeCCH
Confidence 489999999999999999998 99999999764
No 439
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=83.34 E-value=1.4 Score=40.44 Aligned_cols=35 Identities=20% Similarity=0.398 Sum_probs=30.8
Q ss_pred CcccEEEECCCchHHHHHhHhhcCCCc-eEEEEecCC
Q psy10417 22 DEYDFIIVGAGVGGCVVAHRLSEVPSW-KVLLIEAGD 57 (385)
Q Consensus 22 ~~~DviIVGsG~aG~~~A~~La~~~G~-~VlvLE~G~ 57 (385)
.+..|+|||.|..|+.+|..|+.. |. ++.++|...
T Consensus 31 ~~~~VliiG~GglGs~va~~La~~-Gvg~i~lvD~D~ 66 (245)
T PRK05690 31 KAARVLVVGLGGLGCAASQYLAAA-GVGTLTLVDFDT 66 (245)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHc-CCCEEEEEcCCE
Confidence 457899999999999999999998 75 899998754
No 440
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=83.31 E-value=1.3 Score=41.70 Aligned_cols=35 Identities=17% Similarity=0.206 Sum_probs=30.9
Q ss_pred CcccEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417 22 DEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD 57 (385)
Q Consensus 22 ~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~ 57 (385)
..-+|+|||+|.+|.-+|.-+.-- |.+|++||...
T Consensus 167 ~~~kv~iiGGGvvgtnaAkiA~gl-gA~Vtild~n~ 201 (371)
T COG0686 167 LPAKVVVLGGGVVGTNAAKIAIGL-GADVTILDLNI 201 (371)
T ss_pred CCccEEEECCccccchHHHHHhcc-CCeeEEEecCH
Confidence 356899999999999999888887 99999999864
No 441
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=83.09 E-value=1.2 Score=41.54 Aligned_cols=32 Identities=22% Similarity=0.276 Sum_probs=29.0
Q ss_pred cEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417 25 DFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD 57 (385)
Q Consensus 25 DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~ 57 (385)
.|.|||.|..|.+.|..|+++ |.+|+++++..
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~-g~~V~~~d~~~ 33 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSL-GHTVYGVSRRE 33 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHC-CCEEEEEECCH
Confidence 378999999999999999998 99999999753
No 442
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=83.00 E-value=1.3 Score=47.31 Aligned_cols=32 Identities=16% Similarity=0.279 Sum_probs=29.8
Q ss_pred cEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417 25 DFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD 57 (385)
Q Consensus 25 DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~ 57 (385)
-|.|||+|..|.-+|..+|.+ |+.|+++|...
T Consensus 315 ~v~ViGaG~mG~gIA~~~a~~-G~~V~l~d~~~ 346 (714)
T TIGR02437 315 QAAVLGAGIMGGGIAYQSASK-GTPIVMKDINQ 346 (714)
T ss_pred eEEEECCchHHHHHHHHHHhC-CCeEEEEeCCH
Confidence 589999999999999999998 99999999754
No 443
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=82.92 E-value=1.3 Score=44.75 Aligned_cols=33 Identities=15% Similarity=0.323 Sum_probs=30.6
Q ss_pred cEEEECCCchHHHHHhHhhcCCCceEEEEecCCC
Q psy10417 25 DFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDE 58 (385)
Q Consensus 25 DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~ 58 (385)
.|+|||+|..|+=+|.+|++. +.+|.++.+++.
T Consensus 206 ~VvVVG~G~Sg~diA~~L~~~-a~~V~l~~r~~~ 238 (461)
T PLN02172 206 VVVVIGNFASGADISRDIAKV-AKEVHIASRASE 238 (461)
T ss_pred EEEEECCCcCHHHHHHHHHHh-CCeEEEEEeecc
Confidence 699999999999999999998 999999998764
No 444
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=82.87 E-value=2.9 Score=42.21 Aligned_cols=61 Identities=20% Similarity=0.219 Sum_probs=44.7
Q ss_pred ccCCCeEEEeCcEEEEEEEcCCCCeEEEEEEEe-----------CCeEEEEEeCcEEEEcCCCccc-HHHHHHcCC
Q psy10417 265 IDRTNLHVIKNSRVVKIIIDPISKQAKGVELVK-----------NGHKRSVFARKEVIVSSGAFNS-PKLLMLSGV 328 (385)
Q Consensus 265 ~~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~-----------~g~~~~i~a~k~VVlAaGa~~t-p~LL~~Sgi 328 (385)
+++.|+++++++.+++|.-+ ++++++|++.+ .++..++.++ .||+|.|...+ ..|+...|+
T Consensus 339 ~~~~GV~i~~~~~~~~i~~~--~g~v~~V~~~~~~~~~g~~~~~~g~~~~i~~D-~VI~A~G~~p~~~~l~~~~gl 411 (471)
T PRK12810 339 AHEEGVEREFNVQTKEFEGE--NGKVTGVKVVRTELGEGDFEPVEGSEFVLPAD-LVLLAMGFTGPEAGLLAQFGV 411 (471)
T ss_pred HHHcCCeEEeccCceEEEcc--CCEEEEEEEEEEEecCCCccccCCceEEEECC-EEEECcCcCCCchhhccccCc
Confidence 34579999999999999754 67898888652 2455689996 89999995444 346555554
No 445
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=82.70 E-value=1.4 Score=41.47 Aligned_cols=33 Identities=18% Similarity=0.362 Sum_probs=30.0
Q ss_pred ccEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417 24 YDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD 57 (385)
Q Consensus 24 ~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~ 57 (385)
-.++|||.|..|..+|..|... |.+|.+.+|..
T Consensus 152 k~v~IiG~G~iG~avA~~L~~~-G~~V~v~~R~~ 184 (287)
T TIGR02853 152 SNVMVLGFGRTGMTIARTFSAL-GARVFVGARSS 184 (287)
T ss_pred CEEEEEcChHHHHHHHHHHHHC-CCEEEEEeCCH
Confidence 4689999999999999999998 99999999853
No 446
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=82.57 E-value=1.4 Score=41.69 Aligned_cols=32 Identities=25% Similarity=0.440 Sum_probs=29.2
Q ss_pred cEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417 25 DFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD 57 (385)
Q Consensus 25 DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~ 57 (385)
-|.|||+|.-|.-+|..+|.. |+.|++.|...
T Consensus 5 kv~ViGaG~MG~gIA~~~A~~-G~~V~l~D~~~ 36 (307)
T COG1250 5 KVAVIGAGVMGAGIAAVFALA-GYDVVLKDISP 36 (307)
T ss_pred EEEEEcccchhHHHHHHHhhc-CCceEEEeCCH
Confidence 478999999999999999996 99999999863
No 447
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=82.54 E-value=1.4 Score=39.84 Aligned_cols=35 Identities=26% Similarity=0.311 Sum_probs=30.3
Q ss_pred CcccEEEECCCchHHHHHhHhhcCCCc-eEEEEecCC
Q psy10417 22 DEYDFIIVGAGVGGCVVAHRLSEVPSW-KVLLIEAGD 57 (385)
Q Consensus 22 ~~~DviIVGsG~aG~~~A~~La~~~G~-~VlvLE~G~ 57 (385)
.+.-|+|||.|..|+.+|..|+.. |. +++++|...
T Consensus 20 ~~~~VlivG~GglGs~va~~La~~-Gvg~i~lvD~D~ 55 (228)
T cd00757 20 KNARVLVVGAGGLGSPAAEYLAAA-GVGKLGLVDDDV 55 (228)
T ss_pred hCCcEEEECCCHHHHHHHHHHHHc-CCCEEEEEcCCE
Confidence 356899999999999999999998 76 788888653
No 448
>PRK08017 oxidoreductase; Provisional
Probab=82.50 E-value=1.6 Score=39.58 Aligned_cols=31 Identities=23% Similarity=0.222 Sum_probs=28.0
Q ss_pred EEEECC-CchHHHHHhHhhcCCCceEEEEecCC
Q psy10417 26 FIIVGA-GVGGCVVAHRLSEVPSWKVLLIEAGD 57 (385)
Q Consensus 26 viIVGs-G~aG~~~A~~La~~~G~~VlvLE~G~ 57 (385)
++|+|+ |..|..+|..|+++ |.+|+++.+..
T Consensus 5 vlVtGasg~IG~~la~~l~~~-g~~v~~~~r~~ 36 (256)
T PRK08017 5 VLITGCSSGIGLEAALELKRR-GYRVLAACRKP 36 (256)
T ss_pred EEEECCCChHHHHHHHHHHHC-CCEEEEEeCCH
Confidence 889998 99999999999998 99999998753
No 449
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=82.31 E-value=1.6 Score=38.59 Aligned_cols=36 Identities=22% Similarity=0.360 Sum_probs=30.9
Q ss_pred CCcccEEEECCCchHHHHHhHhhcCCCc-eEEEEecCC
Q psy10417 21 LDEYDFIIVGAGVGGCVVAHRLSEVPSW-KVLLIEAGD 57 (385)
Q Consensus 21 ~~~~DviIVGsG~aG~~~A~~La~~~G~-~VlvLE~G~ 57 (385)
..+.-|+|||.|..|+.+|..|+.. |. +++++|...
T Consensus 17 L~~s~VlviG~gglGsevak~L~~~-GVg~i~lvD~d~ 53 (198)
T cd01485 17 LRSAKVLIIGAGALGAEIAKNLVLA-GIDSITIVDHRL 53 (198)
T ss_pred HhhCcEEEECCCHHHHHHHHHHHHc-CCCEEEEEECCc
Confidence 3457899999999999999999998 86 599998654
No 450
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=82.07 E-value=1.6 Score=40.54 Aligned_cols=33 Identities=24% Similarity=0.307 Sum_probs=29.5
Q ss_pred ccEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417 24 YDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD 57 (385)
Q Consensus 24 ~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~ 57 (385)
-.++|+|+|.+|.++|..|++. |.+|.++.|..
T Consensus 118 k~vliiGaGg~g~aia~~L~~~-g~~v~v~~R~~ 150 (270)
T TIGR00507 118 QRVLIIGAGGAARAVALPLLKA-DCNVIIANRTV 150 (270)
T ss_pred CEEEEEcCcHHHHHHHHHHHHC-CCEEEEEeCCH
Confidence 3689999999999999999998 89999998753
No 451
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=81.97 E-value=1.2 Score=42.57 Aligned_cols=35 Identities=26% Similarity=0.337 Sum_probs=30.0
Q ss_pred cccEEEECCCchHHHHHhHhhcCCCceEEEEecCCC
Q psy10417 23 EYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDE 58 (385)
Q Consensus 23 ~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~ 58 (385)
--||.|||+|..|.-+|..||-- =..|+|||=.+.
T Consensus 354 gK~VAVIGGGNSGvEAAIDLAGi-v~hVtllEF~~e 388 (520)
T COG3634 354 GKRVAVIGGGNSGVEAAIDLAGI-VEHVTLLEFAPE 388 (520)
T ss_pred CceEEEECCCcchHHHHHhHHhh-hheeeeeecchh
Confidence 34899999999999999999985 568999996554
No 452
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=81.96 E-value=1.4 Score=45.14 Aligned_cols=31 Identities=26% Similarity=0.396 Sum_probs=28.5
Q ss_pred cEEEECCCchHHHHHhHhhcCCCceEEEEecC
Q psy10417 25 DFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAG 56 (385)
Q Consensus 25 DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G 56 (385)
-++|+|+|.+|.++|+.|++. |.+|+++.|.
T Consensus 381 ~vlIlGaGGagrAia~~L~~~-G~~V~i~nR~ 411 (529)
T PLN02520 381 LFVVIGAGGAGKALAYGAKEK-GARVVIANRT 411 (529)
T ss_pred EEEEECCcHHHHHHHHHHHHC-CCEEEEEcCC
Confidence 589999999999999999998 8999999874
No 453
>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively. This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.
Probab=81.89 E-value=1.6 Score=41.12 Aligned_cols=32 Identities=28% Similarity=0.555 Sum_probs=28.4
Q ss_pred EEEECCCchHHHHHhHhhcCCCc-eEEEEecCCC
Q psy10417 26 FIIVGAGVGGCVVAHRLSEVPSW-KVLLIEAGDE 58 (385)
Q Consensus 26 viIVGsG~aG~~~A~~La~~~G~-~VlvLE~G~~ 58 (385)
|+|||+|.-|+.+|..|+.. |. +++++|.+..
T Consensus 2 VLIvGaGGLGs~vA~~La~a-GVg~ItlvD~D~V 34 (307)
T cd01486 2 CLLLGAGTLGCNVARNLLGW-GVRHITFVDSGKV 34 (307)
T ss_pred EEEECCCHHHHHHHHHHHHc-CCCeEEEECCCEe
Confidence 79999999999999999998 76 7999987653
No 454
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=81.86 E-value=1.5 Score=43.92 Aligned_cols=32 Identities=38% Similarity=0.522 Sum_probs=29.6
Q ss_pred cEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417 25 DFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD 57 (385)
Q Consensus 25 DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~ 57 (385)
.|+|+|+|..|..+|..|.+. |.+|+++|+.+
T Consensus 2 ~viIiG~G~ig~~~a~~L~~~-g~~v~vid~~~ 33 (453)
T PRK09496 2 KIIIVGAGQVGYTLAENLSGE-NNDVTVIDTDE 33 (453)
T ss_pred EEEEECCCHHHHHHHHHHHhC-CCcEEEEECCH
Confidence 589999999999999999998 99999999854
No 455
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=81.78 E-value=1.7 Score=38.35 Aligned_cols=36 Identities=14% Similarity=0.231 Sum_probs=30.8
Q ss_pred CCcccEEEECCCchHHHHHhHhhcCCCc-eEEEEecCC
Q psy10417 21 LDEYDFIIVGAGVGGCVVAHRLSEVPSW-KVLLIEAGD 57 (385)
Q Consensus 21 ~~~~DviIVGsG~aG~~~A~~La~~~G~-~VlvLE~G~ 57 (385)
..+.-|+|||.|..|+.+|..|+.. |. ++.++|-..
T Consensus 19 L~~s~VlIiG~gglG~evak~La~~-GVg~i~lvD~d~ 55 (197)
T cd01492 19 LRSARILLIGLKGLGAEIAKNLVLS-GIGSLTILDDRT 55 (197)
T ss_pred HHhCcEEEEcCCHHHHHHHHHHHHc-CCCEEEEEECCc
Confidence 3467899999999999999999998 87 688988653
No 456
>PRK08223 hypothetical protein; Validated
Probab=81.75 E-value=1.6 Score=40.97 Aligned_cols=36 Identities=19% Similarity=0.197 Sum_probs=31.0
Q ss_pred CCcccEEEECCCchHHHHHhHhhcCCCc-eEEEEecCC
Q psy10417 21 LDEYDFIIVGAGVGGCVVAHRLSEVPSW-KVLLIEAGD 57 (385)
Q Consensus 21 ~~~~DviIVGsG~aG~~~A~~La~~~G~-~VlvLE~G~ 57 (385)
..+.-|+|||.|..|+.+|..||.+ |. ++.++|...
T Consensus 25 L~~s~VlIvG~GGLGs~va~~LA~a-GVG~i~lvD~D~ 61 (287)
T PRK08223 25 LRNSRVAIAGLGGVGGIHLLTLARL-GIGKFTIADFDV 61 (287)
T ss_pred HhcCCEEEECCCHHHHHHHHHHHHh-CCCeEEEEeCCC
Confidence 4467899999999999999999998 76 788888654
No 457
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=81.73 E-value=1.7 Score=37.00 Aligned_cols=32 Identities=19% Similarity=0.378 Sum_probs=27.2
Q ss_pred cEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417 25 DFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD 57 (385)
Q Consensus 25 DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~ 57 (385)
.|-|||-|..|...|.+|+++ |++|.+.++..
T Consensus 3 ~Ig~IGlG~mG~~~a~~L~~~-g~~v~~~d~~~ 34 (163)
T PF03446_consen 3 KIGFIGLGNMGSAMARNLAKA-GYEVTVYDRSP 34 (163)
T ss_dssp EEEEE--SHHHHHHHHHHHHT-TTEEEEEESSH
T ss_pred EEEEEchHHHHHHHHHHHHhc-CCeEEeeccch
Confidence 478999999999999999998 99999999753
No 458
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=81.64 E-value=1.4 Score=41.56 Aligned_cols=32 Identities=28% Similarity=0.416 Sum_probs=28.2
Q ss_pred EEEECCCchHHHHHhHhhcCCCc-eEEEEecCCC
Q psy10417 26 FIIVGAGVGGCVVAHRLSEVPSW-KVLLIEAGDE 58 (385)
Q Consensus 26 viIVGsG~aG~~~A~~La~~~G~-~VlvLE~G~~ 58 (385)
|.|||+|..|..+|..|+.. |. .|+++|....
T Consensus 1 I~IIGaG~vG~~ia~~la~~-~l~eV~L~Di~e~ 33 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALK-ELGDVVLLDIVEG 33 (300)
T ss_pred CEEECCCHHHHHHHHHHHhC-CCcEEEEEeCCCc
Confidence 47999999999999999987 76 9999998753
No 459
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=81.39 E-value=1.7 Score=39.58 Aligned_cols=32 Identities=25% Similarity=0.526 Sum_probs=27.9
Q ss_pred EEEECCCchHHHHHhHhhcCCCc-eEEEEecCCC
Q psy10417 26 FIIVGAGVGGCVVAHRLSEVPSW-KVLLIEAGDE 58 (385)
Q Consensus 26 viIVGsG~aG~~~A~~La~~~G~-~VlvLE~G~~ 58 (385)
|+|||+|..|+.++..|+.. |. ++.|+|....
T Consensus 2 VlvvG~GGlG~eilk~La~~-Gvg~i~ivD~D~V 34 (234)
T cd01484 2 VLLVGAGGIGCELLKNLALM-GFGQIHVIDMDTI 34 (234)
T ss_pred EEEECCCHHHHHHHHHHHHc-CCCeEEEEeCCEE
Confidence 78999999999999999998 65 7899987543
No 460
>cd01490 Ube1_repeat2 Ubiquitin activating enzyme (E1), repeat 2. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the second repeat of Ub-E1.
Probab=81.18 E-value=1.6 Score=43.49 Aligned_cols=32 Identities=19% Similarity=0.435 Sum_probs=28.9
Q ss_pred EEEECCCchHHHHHhHhhcCCCc------eEEEEecCCC
Q psy10417 26 FIIVGAGVGGCVVAHRLSEVPSW------KVLLIEAGDE 58 (385)
Q Consensus 26 viIVGsG~aG~~~A~~La~~~G~------~VlvLE~G~~ 58 (385)
|+|||+|..|+-++..||.. |. ++.|+|....
T Consensus 2 VlvVGaGGlGcE~lKnLal~-Gv~~g~~G~I~IvD~D~I 39 (435)
T cd01490 2 VFLVGAGAIGCELLKNFALM-GVGTGESGEITVTDMDNI 39 (435)
T ss_pred EEEECCCHHHHHHHHHHHHc-CCCcCCCCeEEEECCCCc
Confidence 79999999999999999998 87 8999997654
No 461
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=81.11 E-value=2.3 Score=32.38 Aligned_cols=31 Identities=26% Similarity=0.401 Sum_probs=27.4
Q ss_pred EEEECCCchHHHHHhHhhcCCC---ceEEEE-ecCC
Q psy10417 26 FIIVGAGVGGCVVAHRLSEVPS---WKVLLI-EAGD 57 (385)
Q Consensus 26 viIVGsG~aG~~~A~~La~~~G---~~VlvL-E~G~ 57 (385)
+.|||+|-.|.++|..|.++ | .+|+++ ++.+
T Consensus 2 I~iIG~G~mg~al~~~l~~~-g~~~~~v~~~~~r~~ 36 (96)
T PF03807_consen 2 IGIIGAGNMGSALARGLLAS-GIKPHEVIIVSSRSP 36 (96)
T ss_dssp EEEESTSHHHHHHHHHHHHT-TS-GGEEEEEEESSH
T ss_pred EEEECCCHHHHHHHHHHHHC-CCCceeEEeeccCcH
Confidence 57899999999999999998 9 899966 8754
No 462
>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p. This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.
Probab=80.92 E-value=1.7 Score=45.10 Aligned_cols=36 Identities=25% Similarity=0.493 Sum_probs=31.0
Q ss_pred cccEEEECCCchHHHHHhHhhcCCCc-eEEEEecCCCC
Q psy10417 23 EYDFIIVGAGVGGCVVAHRLSEVPSW-KVLLIEAGDED 59 (385)
Q Consensus 23 ~~DviIVGsG~aG~~~A~~La~~~G~-~VlvLE~G~~~ 59 (385)
..-|+|||+|.-|+.+|..|+.. |. +++++|.+...
T Consensus 338 ~~kVLIvGaGGLGs~VA~~La~~-GVg~ItlVD~D~Ve 374 (664)
T TIGR01381 338 QLKVLLLGAGTLGCNVARCLIGW-GVRHITFVDNGKVS 374 (664)
T ss_pred cCeEEEECCcHHHHHHHHHHHHc-CCCeEEEEcCCEEC
Confidence 45799999999999999999998 76 78999977543
No 463
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=80.72 E-value=1.6 Score=37.14 Aligned_cols=35 Identities=20% Similarity=0.266 Sum_probs=27.2
Q ss_pred CcccEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417 22 DEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD 57 (385)
Q Consensus 22 ~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~ 57 (385)
.---++|+|-|..|-.+|..|... |.+|.|.|..+
T Consensus 22 ~Gk~vvV~GYG~vG~g~A~~lr~~-Ga~V~V~e~DP 56 (162)
T PF00670_consen 22 AGKRVVVIGYGKVGKGIARALRGL-GARVTVTEIDP 56 (162)
T ss_dssp TTSEEEEE--SHHHHHHHHHHHHT-T-EEEEE-SSH
T ss_pred CCCEEEEeCCCcccHHHHHHHhhC-CCEEEEEECCh
Confidence 334689999999999999999998 99999999865
No 464
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=80.72 E-value=2 Score=37.64 Aligned_cols=32 Identities=22% Similarity=0.281 Sum_probs=28.5
Q ss_pred ccEEEECC-CchHHHHHhHhhcCCCceEEEEecC
Q psy10417 24 YDFIIVGA-GVGGCVVAHRLSEVPSWKVLLIEAG 56 (385)
Q Consensus 24 ~DviIVGs-G~aG~~~A~~La~~~G~~VlvLE~G 56 (385)
-.++|+|+ |..|..+|..|++. |.+|.++.|.
T Consensus 29 ~~vlVlGgtG~iG~~~a~~l~~~-g~~V~l~~R~ 61 (194)
T cd01078 29 KTAVVLGGTGPVGQRAAVLLARE-GARVVLVGRD 61 (194)
T ss_pred CEEEEECCCCHHHHHHHHHHHHC-CCEEEEEcCC
Confidence 46899996 99999999999998 9999999775
No 465
>PRK06223 malate dehydrogenase; Reviewed
Probab=80.46 E-value=2 Score=40.66 Aligned_cols=32 Identities=31% Similarity=0.460 Sum_probs=28.4
Q ss_pred cEEEECCCchHHHHHhHhhcCCCc-eEEEEecCC
Q psy10417 25 DFIIVGAGVGGCVVAHRLSEVPSW-KVLLIEAGD 57 (385)
Q Consensus 25 DviIVGsG~aG~~~A~~La~~~G~-~VlvLE~G~ 57 (385)
.|.|||+|..|..+|..|+.. |. .|.++|.-.
T Consensus 4 KI~VIGaG~vG~~ia~~la~~-~~~ev~L~D~~~ 36 (307)
T PRK06223 4 KISIIGAGNVGATLAHLLALK-ELGDVVLFDIVE 36 (307)
T ss_pred EEEEECCCHHHHHHHHHHHhC-CCeEEEEEECCC
Confidence 589999999999999999997 65 999999844
No 466
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=80.44 E-value=2 Score=42.38 Aligned_cols=36 Identities=19% Similarity=0.291 Sum_probs=31.3
Q ss_pred CCcccEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417 21 LDEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD 57 (385)
Q Consensus 21 ~~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~ 57 (385)
...--|+|||.|..|..+|..|... |.+|+|+|..+
T Consensus 193 l~Gk~VvViG~G~IG~~vA~~ak~~-Ga~ViV~d~dp 228 (406)
T TIGR00936 193 IAGKTVVVAGYGWCGKGIAMRARGM-GARVIVTEVDP 228 (406)
T ss_pred CCcCEEEEECCCHHHHHHHHHHhhC-cCEEEEEeCCh
Confidence 3445799999999999999999987 99999999765
No 467
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=80.36 E-value=1.9 Score=40.32 Aligned_cols=33 Identities=18% Similarity=0.270 Sum_probs=29.5
Q ss_pred ccEEEECCCchHHHHHhHhhcCCC-ceEEEEecCC
Q psy10417 24 YDFIIVGAGVGGCVVAHRLSEVPS-WKVLLIEAGD 57 (385)
Q Consensus 24 ~DviIVGsG~aG~~~A~~La~~~G-~~VlvLE~G~ 57 (385)
-.++|+|+|-+|.++|..|++. | .+|.|+.|..
T Consensus 124 k~vlVlGaGg~a~ai~~aL~~~-g~~~V~v~~R~~ 157 (278)
T PRK00258 124 KRILILGAGGAARAVILPLLDL-GVAEITIVNRTV 157 (278)
T ss_pred CEEEEEcCcHHHHHHHHHHHHc-CCCEEEEEeCCH
Confidence 3689999999999999999998 8 7999998853
No 468
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=80.22 E-value=1.7 Score=46.56 Aligned_cols=32 Identities=25% Similarity=0.379 Sum_probs=29.7
Q ss_pred cEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417 25 DFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD 57 (385)
Q Consensus 25 DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~ 57 (385)
-|.|||+|..|.-+|..+|.+ |++|+++|..+
T Consensus 337 ~v~ViGaG~MG~gIA~~~a~~-G~~V~l~d~~~ 368 (737)
T TIGR02441 337 TLAVLGAGLMGAGIAQVSVDK-GLKTVLKDATP 368 (737)
T ss_pred EEEEECCCHhHHHHHHHHHhC-CCcEEEecCCH
Confidence 489999999999999999998 99999999764
No 469
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=79.95 E-value=2.7 Score=40.21 Aligned_cols=36 Identities=19% Similarity=0.262 Sum_probs=30.8
Q ss_pred CcccEEEECCCchHHHHHhHhhcCCCc-eEEEEecCCC
Q psy10417 22 DEYDFIIVGAGVGGCVVAHRLSEVPSW-KVLLIEAGDE 58 (385)
Q Consensus 22 ~~~DviIVGsG~aG~~~A~~La~~~G~-~VlvLE~G~~ 58 (385)
...-+.|||+|..|..+|..|+.. |. +|.++|..+.
T Consensus 5 ~~~KI~IIGaG~vG~~ia~~la~~-gl~~i~LvDi~~~ 41 (321)
T PTZ00082 5 KRRKISLIGSGNIGGVMAYLIVLK-NLGDVVLFDIVKN 41 (321)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhC-CCCeEEEEeCCCc
Confidence 335789999999999999999987 85 8999998654
No 470
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=79.89 E-value=2.1 Score=40.45 Aligned_cols=34 Identities=18% Similarity=0.267 Sum_probs=30.6
Q ss_pred cccEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417 23 EYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD 57 (385)
Q Consensus 23 ~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~ 57 (385)
...++|||.|.+|..+|..|... |.+|.++++-.
T Consensus 152 g~kvlViG~G~iG~~~a~~L~~~-Ga~V~v~~r~~ 185 (296)
T PRK08306 152 GSNVLVLGFGRTGMTLARTLKAL-GANVTVGARKS 185 (296)
T ss_pred CCEEEEECCcHHHHHHHHHHHHC-CCEEEEEECCH
Confidence 45799999999999999999998 99999999863
No 471
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=79.87 E-value=1.7 Score=44.93 Aligned_cols=34 Identities=21% Similarity=0.354 Sum_probs=31.0
Q ss_pred cccEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417 23 EYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD 57 (385)
Q Consensus 23 ~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~ 57 (385)
+-.+||+|.|..|-.+|.+|.++ |.+|+++|+.+
T Consensus 417 ~~hiiI~G~G~~G~~la~~L~~~-g~~vvvId~d~ 450 (558)
T PRK10669 417 CNHALLVGYGRVGSLLGEKLLAA-GIPLVVIETSR 450 (558)
T ss_pred CCCEEEECCChHHHHHHHHHHHC-CCCEEEEECCH
Confidence 35789999999999999999998 99999999864
No 472
>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3. UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=79.67 E-value=2 Score=40.39 Aligned_cols=31 Identities=23% Similarity=0.547 Sum_probs=27.5
Q ss_pred EEEECCCchHHHHHhHhhcCCCc-eEEEEecCC
Q psy10417 26 FIIVGAGVGGCVVAHRLSEVPSW-KVLLIEAGD 57 (385)
Q Consensus 26 viIVGsG~aG~~~A~~La~~~G~-~VlvLE~G~ 57 (385)
|+|||+|..|+.+|..|+.. |. ++.|+|-..
T Consensus 2 VlVVGaGGlG~eilknLal~-Gvg~I~IvD~D~ 33 (291)
T cd01488 2 ILVIGAGGLGCELLKNLALS-GFRNIHVIDMDT 33 (291)
T ss_pred EEEECCCHHHHHHHHHHHHc-CCCeEEEECCCE
Confidence 79999999999999999998 75 788888654
No 473
>KOG2495|consensus
Probab=79.63 E-value=1.1 Score=43.98 Aligned_cols=31 Identities=45% Similarity=0.633 Sum_probs=0.0
Q ss_pred EEEECCCchHHHHHhHh--------------hcCCCceEEEEecCC
Q psy10417 26 FIIVGAGVGGCVVAHRL--------------SEVPSWKVLLIEAGD 57 (385)
Q Consensus 26 viIVGsG~aG~~~A~~L--------------a~~~G~~VlvLE~G~ 57 (385)
++|||||+.|.-+|.+| .+. -.+|+++|+.+
T Consensus 221 ~VVVGGGPTGVEFAaEL~Dfi~~Dl~k~yp~l~~-~i~vtLiEA~d 265 (491)
T KOG2495|consen 221 FVVVGGGPTGVEFAAELADFIPEDLRKIYPELKK-DIKVTLIEAAD 265 (491)
T ss_pred EEEECCCCcceeehHHHHHHHHHHHHHhhhcchh-heEEEeeccch
No 474
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=79.54 E-value=2.1 Score=41.91 Aligned_cols=35 Identities=20% Similarity=0.221 Sum_probs=30.8
Q ss_pred CcccEEEECCCchHHHHHhHhhcCCCc-eEEEEecCC
Q psy10417 22 DEYDFIIVGAGVGGCVVAHRLSEVPSW-KVLLIEAGD 57 (385)
Q Consensus 22 ~~~DviIVGsG~aG~~~A~~La~~~G~-~VlvLE~G~ 57 (385)
...-|+|||+|..|+.+|..|+.. |. ++.++|...
T Consensus 134 ~~~~VlvvG~GG~Gs~ia~~La~~-Gvg~i~lvD~d~ 169 (376)
T PRK08762 134 LEARVLLIGAGGLGSPAALYLAAA-GVGTLGIVDHDV 169 (376)
T ss_pred hcCcEEEECCCHHHHHHHHHHHHc-CCCeEEEEeCCE
Confidence 456899999999999999999998 76 799999764
No 475
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=79.36 E-value=1.8 Score=46.53 Aligned_cols=32 Identities=16% Similarity=0.195 Sum_probs=29.0
Q ss_pred cEEEECCCchHHHHHhHhhcCCCce-EEEEecCC
Q psy10417 25 DFIIVGAGVGGCVVAHRLSEVPSWK-VLLIEAGD 57 (385)
Q Consensus 25 DviIVGsG~aG~~~A~~La~~~G~~-VlvLE~G~ 57 (385)
.|+|||+|..|+-+|..|.+. |.+ |+|+++.+
T Consensus 572 ~VvVIGgG~~a~d~A~~~~r~-Ga~~Vtlv~r~~ 604 (752)
T PRK12778 572 KVAVVGGGNTAMDSARTAKRL-GAERVTIVYRRS 604 (752)
T ss_pred cEEEECCcHHHHHHHHHHHHc-CCCeEEEeeecC
Confidence 699999999999999999998 886 99999864
No 476
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=79.12 E-value=1.9 Score=40.51 Aligned_cols=31 Identities=16% Similarity=0.383 Sum_probs=28.7
Q ss_pred EEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417 26 FIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD 57 (385)
Q Consensus 26 viIVGsG~aG~~~A~~La~~~G~~VlvLE~G~ 57 (385)
|.|||.|..|...|..|++. |++|.+.++..
T Consensus 2 IgvIG~G~mG~~iA~~l~~~-G~~V~~~dr~~ 32 (291)
T TIGR01505 2 VGFIGLGIMGSPMSINLAKA-GYQLHVTTIGP 32 (291)
T ss_pred EEEEEecHHHHHHHHHHHHC-CCeEEEEcCCH
Confidence 67999999999999999998 99999998864
No 477
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=79.07 E-value=2.1 Score=43.03 Aligned_cols=32 Identities=22% Similarity=0.293 Sum_probs=29.7
Q ss_pred cEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417 25 DFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD 57 (385)
Q Consensus 25 DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~ 57 (385)
-+.|+|.|.+|.++|..|.+. |.+|.+.|+.+
T Consensus 16 ~i~v~G~G~sG~a~a~~L~~~-G~~V~~~D~~~ 47 (458)
T PRK01710 16 KVAVVGIGVSNIPLIKFLVKL-GAKVTAFDKKS 47 (458)
T ss_pred eEEEEcccHHHHHHHHHHHHC-CCEEEEECCCC
Confidence 589999999999999999998 99999999865
No 478
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=79.02 E-value=2.2 Score=38.80 Aligned_cols=35 Identities=26% Similarity=0.268 Sum_probs=30.2
Q ss_pred CcccEEEECCCchHHHHHhHhhcCCCc-eEEEEecCC
Q psy10417 22 DEYDFIIVGAGVGGCVVAHRLSEVPSW-KVLLIEAGD 57 (385)
Q Consensus 22 ~~~DviIVGsG~aG~~~A~~La~~~G~-~VlvLE~G~ 57 (385)
.+.-|+|||.|..|+.+|..|++. |. +++++|...
T Consensus 10 ~~~~VlVvG~GGvGs~va~~Lar~-GVg~i~LvD~D~ 45 (231)
T cd00755 10 RNAHVAVVGLGGVGSWAAEALARS-GVGKLTLIDFDV 45 (231)
T ss_pred hCCCEEEECCCHHHHHHHHHHHHc-CCCEEEEECCCE
Confidence 345799999999999999999998 76 899998654
No 479
>PRK06057 short chain dehydrogenase; Provisional
Probab=79.00 E-value=2.5 Score=38.53 Aligned_cols=32 Identities=22% Similarity=0.194 Sum_probs=28.3
Q ss_pred cEEEECC-CchHHHHHhHhhcCCCceEEEEecCC
Q psy10417 25 DFIIVGA-GVGGCVVAHRLSEVPSWKVLLIEAGD 57 (385)
Q Consensus 25 DviIVGs-G~aG~~~A~~La~~~G~~VlvLE~G~ 57 (385)
-|+|+|+ |..|..+|.+|+++ |.+|+++.+..
T Consensus 9 ~vlItGasggIG~~~a~~l~~~-G~~v~~~~r~~ 41 (255)
T PRK06057 9 VAVITGGGSGIGLATARRLAAE-GATVVVGDIDP 41 (255)
T ss_pred EEEEECCCchHHHHHHHHHHHc-CCEEEEEeCCH
Confidence 4889988 89999999999998 99999998753
No 480
>PRK07326 short chain dehydrogenase; Provisional
Probab=78.98 E-value=2.6 Score=37.76 Aligned_cols=32 Identities=22% Similarity=0.247 Sum_probs=27.5
Q ss_pred cEEEECC-CchHHHHHhHhhcCCCceEEEEecCC
Q psy10417 25 DFIIVGA-GVGGCVVAHRLSEVPSWKVLLIEAGD 57 (385)
Q Consensus 25 DviIVGs-G~aG~~~A~~La~~~G~~VlvLE~G~ 57 (385)
=++|+|+ |..|..+|.+|+++ |.+|+++.|.+
T Consensus 8 ~ilItGatg~iG~~la~~l~~~-g~~V~~~~r~~ 40 (237)
T PRK07326 8 VALITGGSKGIGFAIAEALLAE-GYKVAITARDQ 40 (237)
T ss_pred EEEEECCCCcHHHHHHHHHHHC-CCEEEEeeCCH
Confidence 4788875 99999999999998 99999998753
No 481
>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2. UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=78.90 E-value=2 Score=40.92 Aligned_cols=32 Identities=25% Similarity=0.493 Sum_probs=28.2
Q ss_pred EEEECCCchHHHHHhHhhcCCCc-eEEEEecCCC
Q psy10417 26 FIIVGAGVGGCVVAHRLSEVPSW-KVLLIEAGDE 58 (385)
Q Consensus 26 viIVGsG~aG~~~A~~La~~~G~-~VlvLE~G~~ 58 (385)
|+|||+|..|+-+|..|+.. |. ++.|+|....
T Consensus 2 VlIVGaGGlG~EiaKnLal~-Gvg~ItIvD~D~V 34 (312)
T cd01489 2 VLVVGAGGIGCELLKNLVLT-GFGEIHIIDLDTI 34 (312)
T ss_pred EEEECCCHHHHHHHHHHHHh-cCCeEEEEcCCCc
Confidence 79999999999999999998 65 7899987653
No 482
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=78.86 E-value=1.8 Score=41.15 Aligned_cols=36 Identities=19% Similarity=0.503 Sum_probs=33.7
Q ss_pred cccEEEECCCchHHHHHhHhhcCCCceEEEEecCCCC
Q psy10417 23 EYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDED 59 (385)
Q Consensus 23 ~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~ 59 (385)
+|||+|||+|.+|++||.+|+++ |+++.++-+|...
T Consensus 2 ~fDv~IIGGGLAGltc~l~l~~~-Gk~c~iv~~gQsA 37 (421)
T COG3075 2 NFDVAIIGGGLAGLTCGLALQQA-GKRCAIVNRGQSA 37 (421)
T ss_pred cccEEEEcCcHHHHHHHHHHHhc-CCcEEEEeCChhh
Confidence 69999999999999999999999 9999999998753
No 483
>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional
Probab=78.85 E-value=2.6 Score=39.06 Aligned_cols=31 Identities=16% Similarity=0.171 Sum_probs=26.9
Q ss_pred cEEEECCC---chHHHHHhHhhcCCCceEEEEecC
Q psy10417 25 DFIIVGAG---VGGCVVAHRLSEVPSWKVLLIEAG 56 (385)
Q Consensus 25 DviIVGsG---~aG~~~A~~La~~~G~~VlvLE~G 56 (385)
=++|.|++ -.|..+|.+|+++ |.+|++..+.
T Consensus 9 ~~lVTGas~~~GIG~aiA~~la~~-Ga~V~~~~r~ 42 (271)
T PRK06505 9 RGLIMGVANDHSIAWGIAKQLAAQ-GAELAFTYQG 42 (271)
T ss_pred EEEEeCCCCCCcHHHHHHHHHHhC-CCEEEEecCc
Confidence 37888886 6899999999998 9999998764
No 484
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=78.64 E-value=2.2 Score=43.37 Aligned_cols=35 Identities=17% Similarity=0.256 Sum_probs=29.5
Q ss_pred CcccEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417 22 DEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD 57 (385)
Q Consensus 22 ~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~ 57 (385)
..-.|+|+|+|++|+.++..+... |.+|.++|..+
T Consensus 164 pg~kVlViGaG~iGL~Ai~~Ak~l-GA~V~a~D~~~ 198 (509)
T PRK09424 164 PPAKVLVIGAGVAGLAAIGAAGSL-GAIVRAFDTRP 198 (509)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHC-CCEEEEEeCCH
Confidence 456899999999999988777776 99999999754
No 485
>PRK07831 short chain dehydrogenase; Provisional
Probab=78.62 E-value=2.6 Score=38.54 Aligned_cols=33 Identities=21% Similarity=0.249 Sum_probs=28.2
Q ss_pred ccEEEECC-C-chHHHHHhHhhcCCCceEEEEecCC
Q psy10417 24 YDFIIVGA-G-VGGCVVAHRLSEVPSWKVLLIEAGD 57 (385)
Q Consensus 24 ~DviIVGs-G-~aG~~~A~~La~~~G~~VlvLE~G~ 57 (385)
--++|.|+ | ..|..+|..|+++ |.+|+++++..
T Consensus 18 k~vlItG~sg~gIG~~ia~~l~~~-G~~V~~~~~~~ 52 (262)
T PRK07831 18 KVVLVTAAAGTGIGSATARRALEE-GARVVISDIHE 52 (262)
T ss_pred CEEEEECCCcccHHHHHHHHHHHc-CCEEEEEeCCH
Confidence 45899997 5 6999999999998 99999998754
No 486
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=78.61 E-value=2.5 Score=42.35 Aligned_cols=33 Identities=18% Similarity=0.208 Sum_probs=29.9
Q ss_pred cEEEECCCchHHHHHhHhhcCCCceEEEEecCCC
Q psy10417 25 DFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDE 58 (385)
Q Consensus 25 DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~ 58 (385)
-++|+|.|.+|.++|..|++. |.+|++.|....
T Consensus 7 ~~~v~G~g~~G~~~a~~l~~~-g~~v~~~d~~~~ 39 (445)
T PRK04308 7 KILVAGLGGTGISMIAYLRKN-GAEVAAYDAELK 39 (445)
T ss_pred EEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCCC
Confidence 589999999999999999998 999999997654
No 487
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=78.50 E-value=2.4 Score=42.10 Aligned_cols=34 Identities=24% Similarity=0.286 Sum_probs=30.3
Q ss_pred cccEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417 23 EYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD 57 (385)
Q Consensus 23 ~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~ 57 (385)
.--++|||.|..|..+|..|... |.+|++.|+.+
T Consensus 212 Gk~VlViG~G~IG~~vA~~lr~~-Ga~ViV~d~dp 245 (425)
T PRK05476 212 GKVVVVAGYGDVGKGCAQRLRGL-GARVIVTEVDP 245 (425)
T ss_pred CCEEEEECCCHHHHHHHHHHHhC-CCEEEEEcCCc
Confidence 34699999999999999999988 99999999754
No 488
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=78.41 E-value=2.6 Score=40.23 Aligned_cols=33 Identities=21% Similarity=0.383 Sum_probs=29.2
Q ss_pred ccEEEECCCchHHHHHhHhhcCCCc--eEEEEecCC
Q psy10417 24 YDFIIVGAGVGGCVVAHRLSEVPSW--KVLLIEAGD 57 (385)
Q Consensus 24 ~DviIVGsG~aG~~~A~~La~~~G~--~VlvLE~G~ 57 (385)
.-+.|||+|..|.++|+.|+.. |. .++++|...
T Consensus 7 ~ki~iiGaG~vG~~~a~~l~~~-~~~~el~L~D~~~ 41 (315)
T PRK00066 7 NKVVLVGDGAVGSSYAYALVNQ-GIADELVIIDINK 41 (315)
T ss_pred CEEEEECCCHHHHHHHHHHHhc-CCCCEEEEEeCCC
Confidence 4789999999999999999987 76 799999844
No 489
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=78.35 E-value=2.4 Score=37.66 Aligned_cols=30 Identities=27% Similarity=0.448 Sum_probs=27.2
Q ss_pred EEEECCCchHHHHHhHhhcCCCceEEEEecC
Q psy10417 26 FIIVGAGVGGCVVAHRLSEVPSWKVLLIEAG 56 (385)
Q Consensus 26 viIVGsG~aG~~~A~~La~~~G~~VlvLE~G 56 (385)
+.|+|.|-.|...|.+|+++ |+.|.+-=+.
T Consensus 4 ~~i~GtGniG~alA~~~a~a-g~eV~igs~r 33 (211)
T COG2085 4 IAIIGTGNIGSALALRLAKA-GHEVIIGSSR 33 (211)
T ss_pred EEEeccChHHHHHHHHHHhC-CCeEEEecCC
Confidence 68999999999999999999 9999998543
No 490
>PRK08177 short chain dehydrogenase; Provisional
Probab=78.25 E-value=3 Score=37.19 Aligned_cols=32 Identities=28% Similarity=0.422 Sum_probs=27.6
Q ss_pred EEEEC-CCchHHHHHhHhhcCCCceEEEEecCCC
Q psy10417 26 FIIVG-AGVGGCVVAHRLSEVPSWKVLLIEAGDE 58 (385)
Q Consensus 26 viIVG-sG~aG~~~A~~La~~~G~~VlvLE~G~~ 58 (385)
++|+| +|..|..+|.+|+++ |.+|+++.+...
T Consensus 4 vlItG~sg~iG~~la~~l~~~-G~~V~~~~r~~~ 36 (225)
T PRK08177 4 ALIIGASRGLGLGLVDRLLER-GWQVTATVRGPQ 36 (225)
T ss_pred EEEeCCCchHHHHHHHHHHhC-CCEEEEEeCCCc
Confidence 67777 688899999999998 999999998753
No 491
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=78.23 E-value=2.3 Score=41.84 Aligned_cols=32 Identities=16% Similarity=0.201 Sum_probs=27.5
Q ss_pred cEEEECCCchHHHHHhHhhcCCCceEEEEecCCC
Q psy10417 25 DFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDE 58 (385)
Q Consensus 25 DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~ 58 (385)
.|.|||.|..|+.+|..|| . |++|+++|+...
T Consensus 2 kI~VIGlGyvGl~~A~~lA-~-G~~VigvD~d~~ 33 (388)
T PRK15057 2 KITISGTGYVGLSNGLLIA-Q-NHEVVALDILPS 33 (388)
T ss_pred EEEEECCCHHHHHHHHHHH-h-CCcEEEEECCHH
Confidence 3789999999999997777 5 899999998553
No 492
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=78.14 E-value=2.3 Score=39.60 Aligned_cols=32 Identities=16% Similarity=0.229 Sum_probs=28.6
Q ss_pred cEEEECCCchHHHHHhHhhcCCCc-eEEEEecCC
Q psy10417 25 DFIIVGAGVGGCVVAHRLSEVPSW-KVLLIEAGD 57 (385)
Q Consensus 25 DviIVGsG~aG~~~A~~La~~~G~-~VlvLE~G~ 57 (385)
.++|+|+|-++.++|+.|++. |. +|.|+.|-.
T Consensus 124 ~vlilGaGGaarAi~~aL~~~-g~~~i~i~nR~~ 156 (272)
T PRK12550 124 VVALRGSGGMAKAVAAALRDA-GFTDGTIVARNE 156 (272)
T ss_pred eEEEECCcHHHHHHHHHHHHC-CCCEEEEEeCCH
Confidence 699999999999999999998 75 699998854
No 493
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=78.07 E-value=2.5 Score=39.60 Aligned_cols=32 Identities=16% Similarity=0.306 Sum_probs=28.5
Q ss_pred ccEEEECCCchHHHHHhHhhcCCCc-eEEEEecC
Q psy10417 24 YDFIIVGAGVGGCVVAHRLSEVPSW-KVLLIEAG 56 (385)
Q Consensus 24 ~DviIVGsG~aG~~~A~~La~~~G~-~VlvLE~G 56 (385)
-.++|||+|-+|-++|+.|++. |. +|.|+.|-
T Consensus 126 k~vlvlGaGGaarai~~aL~~~-G~~~i~I~nRt 158 (282)
T TIGR01809 126 FRGLVIGAGGTSRAAVYALASL-GVTDITVINRN 158 (282)
T ss_pred ceEEEEcCcHHHHHHHHHHHHc-CCCeEEEEeCC
Confidence 4699999999999999999998 75 79999875
No 494
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=78.07 E-value=2.3 Score=45.36 Aligned_cols=32 Identities=16% Similarity=0.203 Sum_probs=29.1
Q ss_pred cEEEECCCchHHHHHhHhh-cCCCceEEEEecCC
Q psy10417 25 DFIIVGAGVGGCVVAHRLS-EVPSWKVLLIEAGD 57 (385)
Q Consensus 25 DviIVGsG~aG~~~A~~La-~~~G~~VlvLE~G~ 57 (385)
-|.|||+|..|.-+|..+| .+ |+.|+++|...
T Consensus 311 ~v~ViGaG~mG~giA~~~a~~~-G~~V~l~d~~~ 343 (708)
T PRK11154 311 KVGVLGGGLMGGGIAYVTATKA-GLPVRIKDINP 343 (708)
T ss_pred EEEEECCchhhHHHHHHHHHHc-CCeEEEEeCCH
Confidence 4899999999999999999 77 99999999754
No 495
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=78.07 E-value=2.4 Score=42.35 Aligned_cols=34 Identities=32% Similarity=0.394 Sum_probs=30.9
Q ss_pred cccEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417 23 EYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD 57 (385)
Q Consensus 23 ~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~ 57 (385)
.-.++|+|.|..|..+|..|.+. |..|+++|+.+
T Consensus 231 ~~~iiIiG~G~~g~~l~~~L~~~-~~~v~vid~~~ 264 (453)
T PRK09496 231 VKRVMIVGGGNIGYYLAKLLEKE-GYSVKLIERDP 264 (453)
T ss_pred CCEEEEECCCHHHHHHHHHHHhC-CCeEEEEECCH
Confidence 45699999999999999999998 99999999765
No 496
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=77.98 E-value=5.3 Score=40.31 Aligned_cols=61 Identities=25% Similarity=0.246 Sum_probs=43.5
Q ss_pred cCCCeEEEeCcEEEEEEEcCCCCeEEEEEEEe-----------------CCeEEEEEeCcEEEEcCCCccc-HHHHHHcC
Q psy10417 266 DRTNLHVIKNSRVVKIIIDPISKQAKGVELVK-----------------NGHKRSVFARKEVIVSSGAFNS-PKLLMLSG 327 (385)
Q Consensus 266 ~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~-----------------~g~~~~i~a~k~VVlAaGa~~t-p~LL~~Sg 327 (385)
+..|+++++++.+++|..++ ++++++|++.. .++..++.++ .||+|.|...+ ..++..+|
T Consensus 331 ~~~GV~~~~~~~~~~i~~~~-~g~v~~v~~~~~~~~~~~~~g~~~~~~~~g~~~~i~~D-~Vi~a~G~~p~~~~~~~~~g 408 (467)
T TIGR01318 331 REEGVEFLFNVQPVYIECDE-DGRVTGVGLVRTALGEPDADGRRRPVPVAGSEFVLPAD-VVIMAFGFQPHAMPWLAGHG 408 (467)
T ss_pred HhcCCEEEecCCcEEEEECC-CCeEEEEEEEEEEecccCCCCCccceecCCceEEEECC-EEEECCcCCCCccccccccC
Confidence 45799999999999998653 57888887642 1345689996 79999996544 23444444
Q ss_pred C
Q psy10417 328 V 328 (385)
Q Consensus 328 i 328 (385)
+
T Consensus 409 l 409 (467)
T TIGR01318 409 I 409 (467)
T ss_pred c
Confidence 4
No 497
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=77.78 E-value=2.7 Score=37.89 Aligned_cols=30 Identities=13% Similarity=0.337 Sum_probs=27.1
Q ss_pred ccEEEECCCchHHHHHhHhhcCCCceEEEEe
Q psy10417 24 YDFIIVGAGVGGCVVAHRLSEVPSWKVLLIE 54 (385)
Q Consensus 24 ~DviIVGsG~aG~~~A~~La~~~G~~VlvLE 54 (385)
.-|+|||||..++-=+..|.+. |.+|+|+=
T Consensus 26 ~~VLVVGGG~VA~RK~~~Ll~~-gA~VtVVa 55 (223)
T PRK05562 26 IKVLIIGGGKAAFIKGKTFLKK-GCYVYILS 55 (223)
T ss_pred CEEEEECCCHHHHHHHHHHHhC-CCEEEEEc
Confidence 4599999999999989999998 99999994
No 498
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=77.77 E-value=2.6 Score=41.22 Aligned_cols=36 Identities=22% Similarity=0.429 Sum_probs=31.1
Q ss_pred CcccEEEECCCchHHHHHhHhhcCCCc-eEEEEecCCC
Q psy10417 22 DEYDFIIVGAGVGGCVVAHRLSEVPSW-KVLLIEAGDE 58 (385)
Q Consensus 22 ~~~DviIVGsG~aG~~~A~~La~~~G~-~VlvLE~G~~ 58 (385)
...-|+|||.|..|+.+|..|+.. |. ++.++|....
T Consensus 40 ~~~~VliiG~GglG~~v~~~La~~-Gvg~i~ivD~D~v 76 (370)
T PRK05600 40 HNARVLVIGAGGLGCPAMQSLASA-GVGTITLIDDDTV 76 (370)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHc-CCCEEEEEeCCEE
Confidence 356799999999999999999998 75 8999997643
No 499
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=77.64 E-value=2.6 Score=40.67 Aligned_cols=30 Identities=23% Similarity=0.254 Sum_probs=27.8
Q ss_pred cEEEECCCchHHHHHhHhhcCCC--------ceEEEEec
Q psy10417 25 DFIIVGAGVGGCVVAHRLSEVPS--------WKVLLIEA 55 (385)
Q Consensus 25 DviIVGsG~aG~~~A~~La~~~G--------~~VlvLE~ 55 (385)
.+.|||+|.-|.++|..|+++ | .+|.+..+
T Consensus 1 kI~VIGaG~wGtALA~~la~n-g~~~~~~~~~~V~lw~~ 38 (342)
T TIGR03376 1 RVAVVGSGNWGTAIAKIVAEN-ARALPELFEESVRMWVF 38 (342)
T ss_pred CEEEECcCHHHHHHHHHHHHc-CCcccccCCceEEEEEe
Confidence 378999999999999999998 8 89999987
No 500
>PRK07774 short chain dehydrogenase; Provisional
Probab=77.50 E-value=2.9 Score=37.75 Aligned_cols=32 Identities=25% Similarity=0.250 Sum_probs=28.5
Q ss_pred cEEEECC-CchHHHHHhHhhcCCCceEEEEecCC
Q psy10417 25 DFIIVGA-GVGGCVVAHRLSEVPSWKVLLIEAGD 57 (385)
Q Consensus 25 DviIVGs-G~aG~~~A~~La~~~G~~VlvLE~G~ 57 (385)
-++|.|+ |..|..+|..|+++ |.+|+++.|..
T Consensus 8 ~vlItGasg~iG~~la~~l~~~-g~~vi~~~r~~ 40 (250)
T PRK07774 8 VAIVTGAAGGIGQAYAEALARE-GASVVVADINA 40 (250)
T ss_pred EEEEECCCchHHHHHHHHHHHC-CCEEEEEeCCH
Confidence 4899987 99999999999998 99999998753
Done!