RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10417
(385 letters)
>1gpe_A Protein (glucose oxidase); oxidoreductase(flavoprotein); HET: NAG
BMA MAN FAD; 1.80A {Penicillium amagasakiense} SCOP:
c.3.1.2 d.16.1.1
Length = 587
Score = 388 bits (1000), Expect = e-131
Identities = 91/360 (25%), Positives = 153/360 (42%), Gaps = 47/360 (13%)
Query: 22 DEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDEDR---IFTDLVLISHYYQFTPYN 78
YD+II G G+ G VA +L+E P KVL+IE G + + T +
Sbjct: 23 KTYDYIIAGGGLTGLTVAAKLTENPKIKVLVIEKGFYESNDGAIIEDPNAYGQIFGTTVD 82
Query: 79 WGFKTTPQKNACLGLPNNQCLWPQGKGVGGSTIINGNIFTRGFPNDFNEWESL-GNTGWS 137
+ T P N N GKG+GGST+ING+ +TR + WE + G GW+
Sbjct: 83 QNYLTVPLIN------NRTNNIKAGKGLGGSTLINGDSWTRPDKVQIDSWEKVFGMEGWN 136
Query: 138 FDDVLKYFKKFERINIPELNSDTVYHNTNGLLNVEYSPYKSKLSDIFLKVGLFNSDTVYH 197
+D++ +Y KK E P H+ + H
Sbjct: 137 WDNMFEYMKKAEAARTPTAAQLAAGHS---------------------------FNATCH 169
Query: 198 NTNGLLNVEYSPY---KSKLSDIFLKSSKELGY-TNIDYNNPNTKIGFSIVQSTI-KNGR 252
TNG + S + + + LG D+ + G S++ + + +N
Sbjct: 170 GTNGTVQSGARDNGQPWSPIMKALMNTVSALGVPVQQDFLCGHP-RGVSMIMNNLDENQV 228
Query: 253 RMTASKAYLKPIIDRTNLHVIKNSRVVKIIIDPIS--KQAKGVELVKNGHKR-SVFARKE 309
R+ A++A+L P R+NL ++ V K++ + QA GV N VFA+ E
Sbjct: 229 RVDAARAWLLPNYQRSNLEILTGQMVGKVLFKQTASGPQAVGVNFGTNKAVNFDVFAKHE 288
Query: 310 VIVSSGAFNSPKLLMLSGVGPREHLTELGIPVVQDLRVGDNLMEHVAYSALTFGINKTFS 369
V++++G+ SP +L SG+G + L + + + DL VG N+ + + ++ + +
Sbjct: 289 VLLAAGSAISPLILEYSGIGLKSVLDQANVTQLLDLPVGINMQDQTTTT-VSSRASSAGA 347
>3fim_B ARYL-alcohol oxidase; AAO, lignin degradation, oxidoreductase,
flavoprotein; HET: FAD; 2.55A {Pleurotus eryngii}
Length = 566
Score = 386 bits (993), Expect = e-131
Identities = 100/373 (26%), Positives = 181/373 (48%), Gaps = 49/373 (13%)
Query: 23 EYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAG--DEDRIFTDL-VLISHYYQFTPYNW 79
++D+++VGAG G VVA RL+E P VL++EAG DE+ + + +L + ++W
Sbjct: 2 DFDYVVVGAGNAGNVVAARLTEDPDVSVLVLEAGVSDENVLGAEAPLLAPGLVPNSIFDW 61
Query: 80 GFKTTPQKNACLGLPNNQCLWPQGKGVGGSTIINGNIFTRGFPNDFNEWESL-GNTGWSF 138
+ TT Q G +P+G+ +GGS+ ++ + RG DF+ + ++ G+ GW++
Sbjct: 62 NYTTTAQA----GYNGRSIAYPRGRMLGGSSSVHYMVMMRGSTEDFDRYAAVTGDEGWNW 117
Query: 139 DDVLKYFKKFERINIPELNSDTVYHNTNGLLNVEYSPYKSKLSDIFLKVGLFNSDTVYHN 198
D++ ++ +K E + P N HNT+G H
Sbjct: 118 DNIQQFVRKNEMVVPPADN-----HNTSGEFIPA-----------------------VHG 149
Query: 199 TNGLLNVEYSPYKSKLSDIFLKSSKELGYT---NIDYNNPNTKIGFSIVQSTIKNGRRMT 255
TNG +++ + + L D L +++E N D + +G S +++ NG+R +
Sbjct: 150 TNGSVSISLPGFPTPLDDRVLATTQEQSEEFFFNPDMGTGHP-LGISWSIASVGNGQRSS 208
Query: 256 ASKAYLKPIIDRTNLHVIKNSRVVKIIIDP-----ISKQAKGVELVKNGHKRSVFARKEV 310
+S AYL+P R NL V+ N++V K++ + + + +V A+KEV
Sbjct: 209 SSTAYLRPAQSRPNLSVLINAQVTKLVNSGTTNGLPAFRCVEYAEQEGAPTTTVCAKKEV 268
Query: 311 IVSSGAFNSPKLLMLSGVGPREHLTELGIPVVQDLR-VGDNLMEHVAYSALTFGINK--T 367
++S+G+ +P LL LSG+G L+ +GI + + VG NL +H+ F +N T
Sbjct: 269 VLSAGSVGTPILLQLSGIGDENDLSSVGIDTIVNNPSVGRNLSDHLLLP-AAFFVNSNQT 327
Query: 368 FSVVTKRLLRQPI 380
F + + +
Sbjct: 328 FDNIFRDSSEFNV 340
>3qvp_A Glucose oxidase; oxidoreductase; HET: NAG BMA MAN FAD; 1.20A
{Aspergillus niger} PDB: 1gal_A* 1cf3_A* 3qvr_A*
Length = 583
Score = 376 bits (967), Expect = e-127
Identities = 91/360 (25%), Positives = 156/360 (43%), Gaps = 46/360 (12%)
Query: 22 DEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDEDRIFTDLVLI-SHYYQF--TPYN 78
D+II G G+ G A RL+E P+ VL+IE+G + ++ + Y + +
Sbjct: 18 RTVDYIIAGGGLTGLTTAARLTENPNISVLVIESGSYESDRGPIIEDLNAYGDIFGSSVD 77
Query: 79 WGFKTTPQKNACLGLPNNQCLWPQGKGVGGSTIINGNIFTRGFPNDFNEWESL-GNTGWS 137
++T N L G G+GGST++NG +TR + WE++ GN GW+
Sbjct: 78 HAYETVEL-----ATNNQTALIRSGNGLGGSTLVNGGTWTRPHKAQVDSWETVFGNEGWN 132
Query: 138 FDDVLKYFKKFERINIPELNSDTVYHNTNGLLNVEYSPYKSKLSDIFLKVGLFNSDTVYH 197
+D+V Y + ER P H + H
Sbjct: 133 WDNVAAYSLQAERARAPNAKQIAAGHY---------------------------FNASCH 165
Query: 198 NTNGLLNVE---YSPYKSKLSDIFLKSSKELGY-TNIDYNNPNTKIGFSIVQSTI-KNGR 252
NG ++ S + + + ++ G T D+ + G S+ +T+ ++
Sbjct: 166 GVNGTVHAGPRDTGDDYSPIVKALMSAVEDRGVPTKKDFGCGDP-HGVSMFPNTLHEDQV 224
Query: 253 RMTASKAYLKPIIDRTNLHVIKNSRVVKIIIDP--ISKQAKGVE-LVKNGHKRSVFARKE 309
R A++ +L P R NL V+ V K+++ + +A GVE G+ +V+A+ E
Sbjct: 225 RSDAAREWLLPNYQRPNLQVLTGQYVGKVLLSQNGTTPRAVGVEFGTHKGNTHNVYAKHE 284
Query: 310 VIVSSGAFNSPKLLMLSGVGPREHLTELGIPVVQDLRVGDNLMEHVAYSALTFGINKTFS 369
V++++G+ SP +L SG+G + L LGI V DL VG NL + + + I +
Sbjct: 285 VLLAAGSAVSPTILEYSGIGMKSILEPLGIDTVVDLPVGLNLQDQTTAT-VRSRITSAGA 343
>3q9t_A Choline dehydrogenase and related flavoproteins;
glucose-methanol-choline oxidoreductase family, formate
OXID formyl-FAD, oxidoreductase; HET: FAY; 2.24A
{Aspergillus oryzae}
Length = 577
Score = 366 bits (942), Expect = e-123
Identities = 92/374 (24%), Positives = 160/374 (42%), Gaps = 53/374 (14%)
Query: 22 DEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDEDR---IFTDLVLISHYYQFTPYN 78
+DF+IVG G G VA RL+E P+ VL++EAG + + + + Y+
Sbjct: 5 SHFDFVIVGGGTAGNTVAGRLAENPNVTVLIVEAGIGNPEDIPEITTPSSAMDLRNSKYD 64
Query: 79 WGFKTTPQKNACLGLPNNQCLWP--QGKGVGGSTIINGNIFTRGFPNDFNEWESLGNTGW 136
W +KTT + + P +GK +GGS+ +N + G F++WE G W
Sbjct: 65 WAYKTTMVR----RDDYERIEKPNTRGKTLGGSSSLNYFTWVPGHKATFDQWEEFGGKEW 120
Query: 137 SFDDVLKYFKKFERINIPELNSDTVYHNTNGLLNVEYSPYKSKLSDIFLKVGLFNSDTVY 196
++D ++ Y +K + L++ +
Sbjct: 121 TWDPLVPYLRKSA-------------TYHDD-------------------PRLYSPELEK 148
Query: 197 HNTNGLLNVEYSPYKSK---LSDIFLKSSKELGY-TNIDYNNPNTKIGFSIVQSTIKNGR 252
G + + ++ + + K+ K +G + + G + TI G+
Sbjct: 149 IGGGGPIPISHAELIDEMAPFRENLTKAWKSMGQPLIENIYDG-EMDGLTHCCDTIYRGQ 207
Query: 253 RMTASKAYLKPIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELV-KNGHKRSVFARKEVI 311
R S ++L + ++ N+ ++ ++II+ + KGV +V G++ + FA +EVI
Sbjct: 208 R---SGSFL-FVKNKPNITIVPEVHSKRLIINEADRTCKGVTVVTAAGNELNFFADREVI 263
Query: 312 VSSGAFNSPKLLMLSGVGPREHLTELGIPVVQDLR-VGDNLMEHVAYSALTFGINKTFSV 370
+S G F +PKLLMLSG+GP L+ GI + D R VG NLM+H + F +
Sbjct: 264 LSQGVFETPKLLMLSGIGPTRELSRHGINTIVDSRHVGQNLMDHPGVP-FVLRVKDGFGM 322
Query: 371 VTKRLLRQPIKTGV 384
L P + V
Sbjct: 323 DDVLLRHGPKRDAV 336
>2jbv_A Choline oxidase; alcohol oxidation, flavoenyzme oxidase, covalently
linked FAD, C4A-adduct, flavoprotein, oxidoreductase;
HET: FAO; 1.86A {Arthrobacter globiformis} PDB: 3nne_A*
3ljp_A*
Length = 546
Score = 349 bits (898), Expect = e-117
Identities = 94/342 (27%), Positives = 160/342 (46%), Gaps = 50/342 (14%)
Query: 22 DEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDEDRIFTDLVLISHYYQF--TPYNW 79
E+D+I+VG G G VA RLSE P+ V L+EAG +DR +++ + + + + Y+W
Sbjct: 12 REFDYIVVGGGSAGAAVAARLSEDPAVSVALVEAGPDDRGVPEVLQLDRWMELLESGYDW 71
Query: 80 GFKTTPQKNACLGLPNNQCLWPQGKGVGGSTIINGNIFTRGFPNDFNEWES-LGNTGWSF 138
+ PQ+N N+ + K +GG + N I D +EWE+ G TGW+
Sbjct: 72 DYPIEPQENG-----NSFMRHARAKVMGGCSSHNSCIAFWAPREDLDEWEAKYGATGWNA 126
Query: 139 DDVLKYFKKFERINIPELNSDTVYHNTNGLLNVEYSPYKSKLSDIFLKVGLFNSDTVYHN 198
+ +K+ E N + D +H
Sbjct: 127 EAAWPLYKRLE-------------TNEDA-----------------------GPDAPHHG 150
Query: 199 TNGLLNVEYSPYKSKLSDIFLKSSKELGY-TNIDYNNPNTKIGFSIVQSTIK-NGRRMTA 256
+G +++ P K L + ++ G G + Q + +G R ++
Sbjct: 151 DSGPVHLMNVPPKDPTGVALLDACEQAGIPRAKFNTGTTVVNGANFFQINRRADGTRSSS 210
Query: 257 SKAYLKPIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVKN--GHKRSVFARKEVIVSS 314
S +Y+ PI+++ N ++ R +++ D ++ GV++V + GH + AR EV++S+
Sbjct: 211 SVSYIHPIVEQENFTLLTGLRARQLVFDA-DRRCTGVDIVDSAFGHTHRLTARNEVVLST 269
Query: 315 GAFNSPKLLMLSGVGPREHLTELGIPVVQDLR-VGDNLMEHV 355
GA ++PKLLMLSG+GP HL E GI V+ D VG++L +H
Sbjct: 270 GAIDTPKLLMLSGIGPAAHLAEHGIEVLVDSPGVGEHLQDHP 311
>3t37_A Probable dehydrogenase; BET alpha beta fold, ADP binding,
oxidoreductase; HET: FAD; 2.19A {Mesorhizobium loti}
Length = 526
Score = 338 bits (869), Expect = e-112
Identities = 94/356 (26%), Positives = 157/356 (44%), Gaps = 62/356 (17%)
Query: 22 DEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDEDRIFTDLVLISH------YYQFT 75
D +IVG G G ++A RLSE P +VLLIEAG+E I Q
Sbjct: 16 PNCDIVIVGGGSAGSLLAARLSEDPDSRVLLIEAGEEPTDP----DI-WNPAAWPALQGR 70
Query: 76 PYNWGFKTTPQKNACLGLPNNQCLWPQGKGVGGSTIINGNIFTRGFPNDFNEW-ESLGNT 134
Y+W ++T Q G W +G+ +GGS+ ++ + RG P+DF W ++ G+
Sbjct: 71 SYDWDYRTEAQA----GTAGRAHHWARGRLIGGSSCLHAMGYMRGHPSDFQAWVDASGDR 126
Query: 135 GWSFDDVLKYFKKFERINIPELNSDTVYHNTNGLLNVEYSPYKSKLSDIFLKVGLFNSDT 194
W +D++L F+ E + G
Sbjct: 127 RWGWDELLPVFQAIE-------------DHPLG-------------------------GD 148
Query: 195 VYHNTNGLLNVEY-SPYKSKLSDIFLKSSKELGY-TNIDYNNPNTKIGFSIVQSTIKNGR 252
H G L + + S L+ F+++ LG +N+ G + I++GR
Sbjct: 149 GIHGKGGPLPIHLPADEVSPLARAFIEAGASLGLPRLEGHNSGEMI-GVTPNSLNIRDGR 207
Query: 253 RMTASKAYLKPII-DRTNLHVIKNSRVVKIIIDPISKQAKGVELVKNGHKRSVFARKEVI 311
R+TA+ A+L + R NL ++ SRV ++ ++ Q + +E+V VFA +++
Sbjct: 208 RVTAADAWLTKAVRGRKNLTILTGSRVRRLKLE--GNQVRSLEVVGRQGSAEVFAD-QIV 264
Query: 312 VSSGAFNSPKLLMLSGVGPREHLTELGIPVVQDLR-VGDNLMEHVAYSALTFGINK 366
+ +GA SP LLM SG+GP + L G+ + D+ +G NL +H+ + + K
Sbjct: 265 LCAGALESPALLMRSGIGPHDVLDAAGVGCLIDMPDIGRNLQDHLLGAGNLYAARK 320
>1ju2_A HydroxynitrIle lyase; flavin, GMC oxidoreductase, almond,
cyanogenesis; HET: NAG NDG FUC BMA MAN FAD; 1.47A
{Prunus dulcis} SCOP: c.3.1.2 d.16.1.1 PDB: 3gdp_A*
3gdn_A*
Length = 536
Score = 312 bits (801), Expect = e-102
Identities = 78/342 (22%), Positives = 130/342 (38%), Gaps = 71/342 (20%)
Query: 20 LLDEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDEDRIFTDLVLISHYYQFTPYNW 79
L YD++IVG G GC +A LSE +KVL++E G + +++ +
Sbjct: 23 LEGSYDYVIVGGGTSGCPLAATLSE--KYKVLVLERGSLPTAYPNVLTADGFVYNLQQED 80
Query: 80 GFKTTPQKNACLGLPNNQCLWPQGKGVGGSTIINGNIFTRGFPNDFNEWESLGNTGWSFD 139
KT ++ + + +G+ +GG++IIN ++ R + ++ W D
Sbjct: 81 DGKTPVER----FVSEDGIDNVRGRVLGGTSIINAGVYARANTSIYSAS----GVDWDMD 132
Query: 140 DVLKYFKKFERINIPELNSDTVYHNTNGLLNVEYSPYKSKLSDIFLKVGLFNSDTVYHNT 199
V + ++ E + ++S FL+ G+
Sbjct: 133 LVNQTYEWVE---------------DTIVYKPNSQSWQSVTKTAFLEAGV---------- 167
Query: 200 NGLLNVEYSPYKSKLSDIFLKSSKELGYTNIDYNNP-NTKIGFSIVQSTIKNGRRMTASK 258
+ ++ G I ST N A+
Sbjct: 168 ------------------------HPNH---GFSLDHEE--GTRITGSTFDNKGTRHAAD 198
Query: 259 AYLKPIIDRTNLHVIKNSRVVKIIIDPIS-KQAKGVELVKNG---HKRSVFARKEVIVSS 314
L + NL V ++ V KII A GV + H+ V ++ EVIVS+
Sbjct: 199 ELLNKG-NSNNLRVGVHASVEKIIFSNAPGLTATGVIYRDSNGTPHQAFVRSKGEVIVSA 257
Query: 315 GAFNSPKLLMLSGVGPREHLTELGIPVVQDLR-VGDNLMEHV 355
G +P+LL+LSGVGP +L+ L IPVV VG L ++
Sbjct: 258 GTIGTPQLLLLSGVGPESYLSSLNIPVVLSHPYVGQFLHDNP 299
>1kdg_A CDH, cellobiose dehydrogenase; GMC oxidoreductase, PHBH fold,
alpha/beta structure, rossman 6-hydroxylated FAD,
oxidoreductase; HET: NAG MAN 6FA EMT; 1.50A
{Phanerochaete chrysosporium} SCOP: c.3.1.2 d.16.1.1
PDB: 1naa_A*
Length = 546
Score = 292 bits (750), Expect = 9e-95
Identities = 75/358 (20%), Positives = 113/358 (31%), Gaps = 80/358 (22%)
Query: 22 DEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDEDRIFTDLVLISHYYQFTP----- 76
YD+IIVGAG GG + A RLSE KVLL+E G T ++ + +
Sbjct: 6 TPYDYIIVGAGPGGIIAADRLSE-AGKKVLLLERGGPSTKQTGGTYVAPWATSSGLTKFD 64
Query: 77 ---YNWGFKTTPQKNACLGLPNNQCLWPQGKGVGGSTIINGNIFTRGFPNDFNEWESLGN 133
T G VGG T +NG ++ DF+ +
Sbjct: 65 IPGLFESLFTDSNP----FWWCKDITVFAGCLVGGGTSVNGALYWYPNDGDFS-----SS 115
Query: 134 TGW--SFDDVLKYFKKFERINIPELNSDTVYHNTNGLLNVEYSPYKSKLSDIFLKVGLFN 191
GW S+ + Y K
Sbjct: 116 VGWPSSWTNHAPYTSKLS-------------SRLPS------------------------ 138
Query: 192 SDTVYHNTNGLLNVEYSPYKSKLSDIFLKSSKELGYTNIDYNNPNTKIGFSIVQSTIKNG 251
T + +T+G +E S + LK T D N F NG
Sbjct: 139 --TDHPSTDGQRYLEQSF---NVVSQLLKGQGYNQATINDNPNYKDH-VFGYSAFDFLNG 192
Query: 252 RRMTASKAYLKPIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVKN----GHKRSVFAR 307
+R YL+ + R N N V ++ + Q GV+ V +
Sbjct: 193 KRAGPVATYLQTALARPNFTFKTNVMVSNVVRN--GSQILGVQTNDPTLGPNGFIPVTPK 250
Query: 308 KEVIVSSGAFNSPKLLMLSGVGPREHLTELGIPVVQDLR-----------VGDNLMEH 354
VI+S+GAF + ++L SG+GP + + + VG N ++
Sbjct: 251 GRVILSAGAFGTSRILFQSGIGPTDMIQTVQSNPTAAAALPPQNQWINLPVGMNAQDN 308
>1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism,
oxidoreductase, atomic RESO; HET: FAD; 0.92A
{Streptomyces SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1b4v_A*
1n1p_A* 1n4u_A* 1n4v_A* 1mxt_A* 2gew_A* 1b8s_A* 3gyi_A*
1cc2_A* 3gyj_A* 1ijh_A* 1cbo_A* 3b3r_A* 3b6d_A* 3cnj_A*
Length = 504
Score = 112 bits (281), Expect = 2e-27
Identities = 51/356 (14%), Positives = 100/356 (28%), Gaps = 66/356 (18%)
Query: 22 DEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDE--DRIFTDLVLISHYYQFTPYNW 79
+++G G G V A RL E + L++E G + +W
Sbjct: 4 GYVPAVVIGTGYGAAVSALRLGE-AGVQTLMLEMGQLWNQPGPDGNIFCGMLNPDKRSSW 62
Query: 80 ------------------GFKTTPQKNACLGLPNNQCLWPQGKGVGGSTIINGNIFTRGF 121
P + +Q G+GVGG +++NG +
Sbjct: 63 FKNRTEAPLGSFLWLDVVNRNIDPYAGVLDRVNYDQMSVYVGRGVGGGSLVNGGMAVEPK 122
Query: 122 PNDFNEWESLGNTGWSFDDVLKYFKKFERINIPELNSDTVYHNTNGLLNVEYSPYKSKLS 181
+ F E S + +YF + + + +T E+ +
Sbjct: 123 RSYFEEI---LPRVDSSEMYDRYFPRANSMLRVNHIDTKWFEDT------EWYKFARVSR 173
Query: 182 DIFLKVGLFNSDTVYHNTNGLLNVEYSPYKSKLSDIFLKSSKELGYTNIDYNNPNTKIGF 241
+ K G L +F+ + + GY + K
Sbjct: 174 EQAGKAG-------------------------LGTVFVPNVYDFGYMQREAAGEVPKSAL 208
Query: 242 SIVQSTIKNGRRMTASKAYLKPIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVKNG-- 299
+ N + + K YL + + + +V I A VE
Sbjct: 209 ATEVIYGNNHGKQSLDKTYLAAALGTGKVTIQTLHQVKTIRQTKDGGYALTVEQKDTDGK 268
Query: 300 -HKRSVFARKEVIVSSGAFNSPKLLMLSGVGPREHLTELGIPVVQDLRVGDNLMEH 354
+ + + + +G+ S +LL+ + + G + VG +
Sbjct: 269 LLATKEISCRYLFLGAGSLGSTELLVRAR--------DTGTLPNLNSEVGAGWGPN 316
>3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer,
GMC oxidoredu PHBH fold, rossmann domain,
oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes
ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A*
2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A*
3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A*
3fdy_A* ...
Length = 623
Score = 105 bits (262), Expect = 9e-25
Identities = 50/358 (13%), Positives = 119/358 (33%), Gaps = 41/358 (11%)
Query: 22 DEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDEDRIFTDLVLISHYYQFTPYNWGF 81
+YD +IVG+G GC A L +KV + + G+ D + ++ F
Sbjct: 45 IKYDVVIVGSGPIGCTYARELVG-AGYKVAMFDIGEIDSGLKIGAHKKNTVEYQKNIDKF 103
Query: 82 KTTPQKN-----ACLGLPNNQCLWPQGKGVGGSTIINGNIFTRGFPNDFNEWES---LGN 133
Q + L P + NG+ + + + +G
Sbjct: 104 VNVIQGQLMSVSVPVNTLVVDTLSPTSWQASTFFVRNGSNPEQDPLRNLSGQAVTRVVGG 163
Query: 134 TGWSFDDVLKYFKKFERINIPELNSDTVYHNTNGLLNVEYSPYKSKLSDIFLKVGLFNSD 193
++ F + +R + + ++D E+ +K F +
Sbjct: 164 MSTAWTCATPRFDREQRPLLVKDDADADDA--------EWDRLYTKAESYFQTGTDQFKE 215
Query: 194 TVYHNTNGLLNVEYSPYKSKLSDIFL-KSSKELGYTNIDYNNPNTKIGFSIVQSTIKNGR 252
++ HN +LN YK + + ++ T +++++ NT +T
Sbjct: 216 SIRHNL--VLNKLTEEYKGQRDFQQIPLAATRRSPTFVEWSSANTVFDLQNRPNTDAPEE 273
Query: 253 RMTASKAYLKPIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELV--KNGHKRSVFARKEV 310
R + +++ + ++ + + + + +G + + A
Sbjct: 274 RFN----------------LFPAVACERVVRNALNSEIESLHIHDLISGDRFEIKADV-Y 316
Query: 311 IVSSGAFNSPKLLMLSGVGPREHLTELGIPVVQDLRVGDNLMEHVAYSALTFGINKTF 368
++++GA ++ +LL+ SG G P + +G + E + ++
Sbjct: 317 VLTAGAVHNTQLLVNSGFGQLGRPNPANPPELLPS-LGSYITEQ-SLVFCQTVMSTEL 372
>1coy_A Cholesterol oxidase; oxidoreductase(oxygen receptor); HET: AND FAD;
1.80A {Brevibacterium sterolicum} SCOP: c.3.1.2 d.16.1.1
PDB: 3cox_A*
Length = 507
Score = 102 bits (254), Expect = 7e-24
Identities = 61/355 (17%), Positives = 109/355 (30%), Gaps = 65/355 (18%)
Query: 22 DEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAG-------DEDRIFTDLV-------- 66
D +++G+G GG V A RL++ ++E G + +IF ++
Sbjct: 10 DRVPALVIGSGYGGAVAALRLTQ-AGIPTQIVEMGRSWDTPGSDGKIFCGMLNPDKRSMW 68
Query: 67 LISHYYQFTPYNWGFKTTPQKNACLGL----PNNQCLWPQGKGVGGSTIINGNIFTRGFP 122
L Q GF + +G+ + QG+GVGG +++NG +
Sbjct: 69 LADKTDQPVSNFMGFGINKSIDRYVGVLDSERFSGIKVYQGRGVGGGSLVNGGMAVTPKR 128
Query: 123 NDFNEWESLGNTGWSFDDVLKYFKKFERINIPELNSDTVYHNTNGLLNVEYSPYKSKLSD 182
N F E + S + KYF + + +T E+ +
Sbjct: 129 NYFEEI---LPSVDSNEMYNKYFPRANTGLGVNNIDQAWFEST------EWYKFARTGRK 179
Query: 183 IFLKVGLFNSDTVYHNTNGLLNVEYSPYKSKLSDIFLKSSKELGYTNIDYNNPNTKIGFS 242
+ G + N Y + TK G
Sbjct: 180 TAQRSGF--TTAFVPNVYD-----------------------FEYMKKEAAGQVTKSGLG 214
Query: 243 IVQSTIKNGRRMTASKAYLKPIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELV---KNG 299
N + + K YL L + RV K+ S + +E + N
Sbjct: 215 GEVIYGNNAGKKSLDKTYLAQAAATGKLTITTLHRVTKVAPATGSGYSVTMEQIDEQGNV 274
Query: 300 HKRSVFARKEVIVSSGAFNSPKLLMLSGVGPREHLTELGIPVVQDLRVGDNLMEH 354
V V ++G+ + KLL+ +P + +VG+ +
Sbjct: 275 VATKVVTADRVFFAAGSVGTSKLLVSMKAQG-------HLPNLSS-QVGEGWGNN 321
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 58.5 bits (141), Expect = 2e-09
Identities = 63/384 (16%), Positives = 106/384 (27%), Gaps = 179/384 (46%)
Query: 116 IFTRGFPNDFNEWESLGNTGWSFDDVLKYFKKFERINIPELNSDTVYHNTNGLLNVEYS- 174
+FT+G + EW + P D Y LL++ S
Sbjct: 208 VFTQGL--NILEW----------------------LENPSNTPDKDY-----LLSIPISC 238
Query: 175 P---------YKSKLSDIFLKVGLFNSDTVYHNTNGLLNVEYSPYKSKLSDI-------- 217
P Y + K+ F + G +
Sbjct: 239 PLIGVIQLAHYV-----VTAKLLGFTPGELRSYLKGATGH--------SQGLVTAVAIAE 285
Query: 218 ------FLKSSKE-------LGY-TNIDYNNPNTKIGFSIVQSTIKNGR----RMTA--- 256
F S ++ +G Y PNT + SI++ +++N M +
Sbjct: 286 TDSWESFFVSVRKAITVLFFIGVRCYEAY--PNTSLPPSILEDSLENNEGVPSPMLSISN 343
Query: 257 -SKAYLKPIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVKNGHK-------------- 301
++ ++ +++TN H+ +V IS LV NG K
Sbjct: 344 LTQEQVQDYVNKTNSHLPAGKQVE------IS-------LV-NGAKNLVVSGPPQSLYGL 389
Query: 302 ----RSVFA-------------RKEVIVSS----GA-FNSPKL-----LMLSGVGPRE-- 332
R A RK + + F+S L L+ +
Sbjct: 390 NLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVS 449
Query: 333 -HLTELGIPVV-----QDLR-VGDNLME----------------------HVAYSALTFG 363
+ ++ IPV DLR + ++ E H+ L FG
Sbjct: 450 FNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHI----LDFG 505
Query: 364 --INKTFSVVTKRLLRQPIKTGVK 385
V+T R TGV+
Sbjct: 506 PGGASGLGVLTHRNKD---GTGVR 526
Score = 45.0 bits (106), Expect = 3e-05
Identities = 56/332 (16%), Positives = 95/332 (28%), Gaps = 134/332 (40%)
Query: 29 VGAGVGGCVVAHRLSEVPSWKVLLIEAGDEDRIFTDLVLISHYYQFTPYNW-GF---KTT 84
G+ V A ++E SW E F V + F + G +
Sbjct: 273 HSQGL---VTAVAIAETDSW---------ES--FFVSVRKAITVLF----FIGVRCYEAY 314
Query: 85 PQKN---------------------ACLGLPN----------NQCLWPQGKGVGGSTIIN 113
P + + L N L P GK V S ++N
Sbjct: 315 PNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHL-PAGKQVEIS-LVN 372
Query: 114 G---NIFTRGFPNDFNEWESLGNTGWSFDDVLKYFK---KFERINIPELNSDTVYHNTNG 167
G + + G P +SL + + L+ K ++ IP
Sbjct: 373 GAKNLVVS-GPP------QSL----YGLNLTLRKAKAPSGLDQSRIP------------- 408
Query: 168 LLNVEYSPYKSKLSDIFLKVGLFNSDTVYHNTNGLLNVEYSPYKSKLSDIFLKSSKELGY 227
+S K K S+ FL V + +H S L +K+L
Sbjct: 409 -----FSERKLKFSNRFLPVA-----SPFH----------SHL---LVPASDLINKDLVK 445
Query: 228 TNIDYNNPNTKIGFSIVQSTIKNGRRMTASKAYLKPII-----------DRTN----LHV 272
N+ +N + +I V T +G + + I + T H+
Sbjct: 446 NNVSFNAKDIQIP---VYDT-FDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHI 501
Query: 273 I-----KNSRVVKIIIDPISKQAKGVELVKNG 299
+ S + + +K GV ++ G
Sbjct: 502 LDFGPGGASGLGVLTHR--NKDGTGVRVIVAG 531
Score = 45.0 bits (106), Expect = 3e-05
Identities = 52/285 (18%), Positives = 97/285 (34%), Gaps = 84/285 (29%)
Query: 120 GFPNDFNEWESLGNTGWSFDDVLKY-FKKFER-------I-----NIPELNSDTV----- 161
G+ + E +G FD VL +FE I + + N T+
Sbjct: 66 GYVSSLVEPSKVG----QFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKE 121
Query: 162 ----YHNTNGLLNVEYS-PYKSKL--------SDIFLKVGLF----NSDTVYHNTNGLLN 204
Y + + S L + + +F N+D Y
Sbjct: 122 LIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVA---IFGGQGNTDD-Y------FE 171
Query: 205 VE----YSPYKSKLSDIFLKSSK---ELGYTNIDYNNPNTKIGFSIVQSTIKNGRRMTAS 257
E Y Y + D+ S++ EL T +D T+ G +I++ ++N T
Sbjct: 172 -ELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQ-GLNILE-WLEN-PSNTPD 227
Query: 258 KAYLK------PIIDRTNL-HVIKNSRVVKIIIDPISKQAKGVELVKNGHKRSVFARKEV 310
K YL P+I L H + ++++ + KG GH + + V
Sbjct: 228 KDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGA----TGHSQGLVT--AV 281
Query: 311 IVSSG----AF--NSPKLL-MLSGVGPREHLT--ELGIP--VVQD 344
++ +F + K + +L +G R + +P +++D
Sbjct: 282 AIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILED 326
Score = 43.9 bits (103), Expect = 8e-05
Identities = 46/267 (17%), Positives = 94/267 (35%), Gaps = 86/267 (32%)
Query: 102 QG---KGVG-----GSTIINGNIFTRGFPNDFNEWESLGNTGWSFDDVLKYFKKFERINI 153
QG +G+G S +++ R D + ++ G +S D++ I+
Sbjct: 1624 QGSQEQGMGMDLYKTSKAAQ-DVWNRA---DNHFKDTYG---FSILDIVINNPVNLTIHF 1676
Query: 154 PELNSDTVYHNTNGLLNVEYSPYKSKLSDIFLKVGLFNSDTVYHNTNGLLN--------- 204
+ N + ++ K K IF ++ ++ + + GLL+
Sbjct: 1677 GGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPAL 1736
Query: 205 --VEYSPYKSKLSDIFLKS-------------SKELG-YT------NIDYNNPNTKIGFS 242
+E + ++ LKS S LG Y ++ S
Sbjct: 1737 TLMEKAAFED------LKSKGLIPADATFAGHS--LGEYAALASLADV----------MS 1778
Query: 243 IVQSTIK--NGRRMTASKAYLKPIIDRTNLHV--IKNSRV--------VKIIIDPISKQA 290
I +S ++ R MT A + + R+N + I RV ++ +++ + K+
Sbjct: 1779 I-ESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRT 1837
Query: 291 KG-VELVKNGHKRSVF-ARKEVIVSSG 315
VE+V N + + V++G
Sbjct: 1838 GWLVEIV-N------YNVENQQYVAAG 1857
Score = 33.5 bits (76), Expect = 0.16
Identities = 30/150 (20%), Positives = 49/150 (32%), Gaps = 40/150 (26%)
Query: 262 KPIIDRTNLHVIKNS--RVVKIIID-PISKQ-----AKGVELVKN-----------GHKR 302
+ + +R + H ++ I+I+ P++ KG + +N G +
Sbjct: 1643 QDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLK 1702
Query: 303 S--VFARKEVIVSSGAFNSPK--L---------LMLSGVGPREHLTELGIPVVQDLRVGD 349
+ +F +S F S K L L L E L G+ G
Sbjct: 1703 TEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADATFAGH 1762
Query: 350 NLMEHVAYSALT-----FGINKTFSVVTKR 374
+L E Y+AL I VV R
Sbjct: 1763 SLGE---YAALASLADVMSIESLVEVVFYR 1789
>1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD
BCN; 2.25A {Mycobacterium tuberculosis}
Length = 399
Score = 48.6 bits (115), Expect = 2e-06
Identities = 10/41 (24%), Positives = 21/41 (51%)
Query: 18 KRLLDEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDE 58
+ + +D +VG+G G +A R++ +VL++E
Sbjct: 2 QPMTARFDLFVVGSGFFGLTIAERVATQLDKRVLVLERRPH 42
>3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural
genomics, PSI-2, protein structure initiative; HET:
ADP; 2.40A {Deinococcus radiodurans R1}
Length = 405
Score = 47.0 bits (110), Expect = 5e-06
Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 23 EYDFIIVGAGVGGCVVAHRLSEV-PSWKVLLIEAGD 57
+D +++GAG G A L ++ P +LL+E G
Sbjct: 36 AFDIVVIGAGRMGAACAFYLRQLAPGRSLLLVEEGG 71
>3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase;
HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB:
3hdy_A* 3he3_A* 3mj4_A*
Length = 397
Score = 45.5 bits (107), Expect = 2e-05
Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 22 DEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDE 58
+D++IVGAG G V+A RL+ +VL+++
Sbjct: 28 KGFDYLIVGAGFAGSVLAERLASS-GQRVLIVDRRPH 63
>3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD;
1.92A {Aeropyrum pernix} PDB: 3vqr_A*
Length = 448
Score = 45.6 bits (108), Expect = 2e-05
Identities = 13/39 (33%), Positives = 22/39 (56%)
Query: 19 RLLDEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD 57
+ +D+++VGAGV G A+ L VL+++AG
Sbjct: 19 SHMPRFDYVVVGAGVVGLAAAYYLKVWSGGSVLVVDAGH 57
>3utf_A UDP-galactopyranose mutase; nucleotide binding, flavin adenine
dinucleotide BIND isomerase; HET: FDA; 2.25A
{Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A*
3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A*
Length = 513
Score = 45.3 bits (106), Expect = 3e-05
Identities = 8/35 (22%), Positives = 20/35 (57%)
Query: 24 YDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDE 58
D +++GAG G A RL+++ +++++ +
Sbjct: 11 VDVLVIGAGPTGLGAAKRLNQIDGPSWMIVDSNET 45
>1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase,
isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP:
c.4.1.3 d.16.1.7
Length = 367
Score = 44.7 bits (105), Expect = 3e-05
Identities = 16/35 (45%), Positives = 25/35 (71%), Gaps = 1/35 (2%)
Query: 24 YDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDE 58
YD+IIVG+G+ G V A+ L ++ + KVL+IE +
Sbjct: 2 YDYIIVGSGLFGAVCANELKKL-NKKVLVIEKRNH 35
>2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase,
lipopolysaccharide biosynthesi; HET: FAD; 2.0A
{Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB:
2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A*
Length = 384
Score = 43.9 bits (103), Expect = 5e-05
Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 23 EYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDE 58
+IVGAG G V+ +L+E +V +I+ D
Sbjct: 3 SKKILIVGAGFSGAVIGRQLAEK-GHQVHIIDQRDH 37
>3atr_A Conserved archaeal protein; saturating double bonds, archaeal
membrane precursor, like 2 geranylgeranylglyceryl
phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius}
PDB: 3atq_A*
Length = 453
Score = 43.6 bits (103), Expect = 7e-05
Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 22 DEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDEDRI 61
+YD +I+G G G A++LS K+LL+++ +RI
Sbjct: 5 LKYDVLIIGGGFAGSSAAYQLSR-RGLKILLVDSKPWNRI 43
>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT
structure initiative, northeast structural genomics
consort NESG; HET: FAD TLA; 1.70A {Bordetella
pertussis}
Length = 369
Score = 43.3 bits (103), Expect = 8e-05
Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 22 DEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDE 58
+ D I++GAGV G +A L+ +VL+ EA +
Sbjct: 3 TDIDCIVIGAGVVGLAIARALAA-GGHEVLVAEAAEG 38
>2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme,
electron transfer, folate-ME enzyme, oxidoreductase;
HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia}
PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B*
3ada_B*
Length = 405
Score = 43.4 bits (103), Expect = 9e-05
Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Query: 5 TLAPKREEFLYGNKRLLDEYDFIIVGAGVGGCVVAHRLSEVPSWK-VLLIEAG 56
L P+ EFL+ N YD IIVG G G A+ L++ V ++E G
Sbjct: 3 DLLPEHPEFLWANPEPKKSYDAIIVGGGGHGLATAYFLAKNHGITNVAVLEKG 55
>2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase
type II family, thiazole synthase, mitochondria DNA
repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} SCOP:
c.3.1.6 PDB: 3fpz_A*
Length = 326
Score = 42.9 bits (100), Expect = 1e-04
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 23 EYDFIIVGAGVGGCVVAHRLSEV-PSWKVLLIEAGDE 58
D IIVGAG G A+ +++ P KV +IE+
Sbjct: 65 VSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVA 101
>3cgv_A Geranylgeranyl reductase related protein; NP_393992.1,
geranylgeranyl bacteriochlorophyll reductase- like FIXC
homolog; HET: MSE FAD UNL; 1.60A {Thermoplasma
acidophilum dsm 1728} PDB: 3oz2_A*
Length = 397
Score = 42.7 bits (101), Expect = 1e-04
Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Query: 21 LDEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDE 58
++ YD ++VG G GG A ++ K L+IE E
Sbjct: 2 METYDVLVVGGGPGGSTAARYAAK-YGLKTLMIEKRPE 38
>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex,
biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis
thaliana} SCOP: c.3.1.6
Length = 284
Score = 42.4 bits (99), Expect = 1e-04
Identities = 13/36 (36%), Positives = 21/36 (58%)
Query: 23 EYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDE 58
E D ++VGAG G A+ +S+ P+ +V +IE
Sbjct: 39 ETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVS 74
>3p1w_A Rabgdi protein; GDI RAB, malaria, structural genomics consortium,
SGC, trans PF10_0345, protein transport; 1.85A
{Plasmodium falciparum 3D7}
Length = 475
Score = 42.6 bits (99), Expect = 1e-04
Identities = 15/75 (20%), Positives = 28/75 (37%), Gaps = 5/75 (6%)
Query: 22 DEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEA----GDEDRIFTDLVLISHYYQFTPY 77
+ YD II+G G+ C+++ LS +L+++ G E L + +
Sbjct: 19 EHYDVIILGTGLKECILSGLLSHYGKK-ILVLDRNPYYGGETASLNLTNLYNTFKPKENI 77
Query: 78 NWGFKTTPQKNACLG 92
+ N L
Sbjct: 78 PSKYGENRHWNVDLI 92
>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus}
Length = 512
Score = 42.6 bits (100), Expect = 1e-04
Identities = 12/39 (30%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 22 DEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDEDR 60
+ +D I++G G GG +A ++ +VLL+E R
Sbjct: 6 EVFDLIVIGGGPGGSTLASFVAM-RGHRVLLLEREAFPR 43
>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis
baeyer-villiger oxidation green CH monooxygenase,
oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP}
PDB: 3gwd_A* 3ucl_A*
Length = 540
Score = 42.2 bits (100), Expect = 2e-04
Identities = 9/37 (24%), Positives = 15/37 (40%)
Query: 22 DEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDE 58
D +++GAG GG H+L + + D
Sbjct: 7 HTVDAVVIGAGFGGIYAVHKLHHELGLTTVGFDKADG 43
>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX),
oxidative demethylation of N-methyl-L-tryptophan, FAD,
flavoenzyme; HET: FAD; 3.2A {Escherichia coli}
Length = 372
Score = 42.0 bits (99), Expect = 2e-04
Identities = 10/35 (28%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 23 EYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD 57
+YD II+G+G G + + VL+ +A
Sbjct: 2 KYDLIIIGSGSVGAAAGYYATR-AGLNVLMTDAHM 35
>3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein;
HET: AHZ; 2.70A {Neurospora crassa}
Length = 344
Score = 41.7 bits (97), Expect = 3e-04
Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 23 EYDFIIVGAGVGGCVVAHRLSEV-PSWKVLLIEAGDE 58
E D +IVGAG G A+ LS + P ++ ++EAG
Sbjct: 79 ETDIVIVGAGSCGLSAAYVLSTLRPDLRITIVEAGVA 115
>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES
protein structure initiative, northeast structural
genomics consortium; HET: FAD; 2.60A {Cytophaga
hutchinsonii}
Length = 421
Score = 41.7 bits (98), Expect = 3e-04
Identities = 11/39 (28%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 22 DEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDEDR 60
++ D +++GAG G V A +++ +KV ++E R
Sbjct: 4 EKVDVLVIGAGPAGTVAASLVNK-SGFKVKIVEKQKFPR 41
>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A
{Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A*
2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*
Length = 542
Score = 41.8 bits (99), Expect = 3e-04
Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Query: 22 DEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDE 58
+E D ++VGAG G +RL E V +IE +
Sbjct: 15 EEVDVLVVGAGFSGLYALYRLRE-LGRSVHVIETAGD 50
>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET:
FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A*
2q6u_A*
Length = 397
Score = 41.3 bits (97), Expect = 3e-04
Identities = 11/36 (30%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 22 DEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD 57
+ YD ++VG G G A +++E +VL++E
Sbjct: 3 ESYDVVVVGGGPVGLATAWQVAE-RGHRVLVLERHT 37
>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex,
oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis}
SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*
Length = 382
Score = 41.0 bits (97), Expect = 4e-04
Identities = 9/35 (25%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 23 EYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD 57
Y+ +++G G+ G +A+ L++ + L E+G
Sbjct: 17 HYEAVVIGGGIIGSAIAYYLAKE-NKNTALFESGT 50
>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD;
1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A*
3up4_A* 3up5_A*
Length = 545
Score = 41.4 bits (98), Expect = 4e-04
Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 22 DEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDE 58
D +++GAGV G A +++ KVL IEAG++
Sbjct: 8 PALDAVVIGAGVTGIYQAFLINQ-AGMKVLGIEAGED 43
>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD
NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A*
4aos_A* 4ap1_A*
Length = 549
Score = 41.0 bits (97), Expect = 5e-04
Identities = 12/37 (32%), Positives = 15/37 (40%), Gaps = 1/37 (2%)
Query: 22 DEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDE 58
YD ++VGAG+ G HR V EA
Sbjct: 20 TSYDVVVVGAGIAGLYAIHRFRSQ-GLTVRAFEAASG 55
>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid,
amadoriase, deglycation, fructosamine oxidase; HET: MSE
FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A*
Length = 438
Score = 40.2 bits (94), Expect = 7e-04
Identities = 9/35 (25%), Positives = 14/35 (40%)
Query: 23 EYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD 57
+IVGAG G A L+ V +++
Sbjct: 6 SSSLLIVGAGTWGTSTALHLARRGYTNVTVLDPYP 40
>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase,
inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A
{Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A*
1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A*
3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A*
3m0o_A* 1l9c_A* 1l9d_A* 1zov_A*
Length = 389
Score = 40.0 bits (94), Expect = 0.001
Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 24 YDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDE 58
+D I+VGAG G ++L++ K LL++A D
Sbjct: 4 FDVIVVGAGSMGMAAGYQLAK-QGVKTLLVDAFDP 37
>1fcd_A Flavocytochrome C sulfide dehydrogenase (flavin- binding
subunit); electron transport(flavocytochrome); HET: FAD
HEM; 2.53A {Allochromatium vinosum} SCOP: c.3.1.5
c.3.1.5 d.87.1.1
Length = 401
Score = 39.7 bits (93), Expect = 0.001
Identities = 13/49 (26%), Positives = 20/49 (40%), Gaps = 12/49 (24%)
Query: 27 IIVGAGVGGCVVAHRLSE-VPSWKVLLIEAGDEDRIFTDLVLISHYYQF 74
++VG G GG A + PS +V LIE + +Y +
Sbjct: 6 VVVGGGTGGATAAKYIKLADPSIEVTLIEPNTD-----------YYTCY 43
>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates,
flavoenzymes, nicotine degradation, oxidoreductase;
HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB:
3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X*
3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A*
Length = 431
Score = 39.4 bits (92), Expect = 0.001
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
Query: 24 YDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDED--RIFTD 64
YD I+VG G G A L+ KVLL+E G+ R ++
Sbjct: 2 YDAIVVGGGFSGLKAARDLTNA-GKKVLLLEGGERLGGRAYSR 43
>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding,
para-hydroxy-benzoate-hydroxylase fold (PHBH- fold),
monotopic membrane-binding domain; HET: FAD OMN TON;
2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5
Length = 504
Score = 39.7 bits (92), Expect = 0.001
Identities = 11/42 (26%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Query: 16 GNKRLLDEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD 57
G + ++GAGV G A++L V + EA
Sbjct: 6 GEDKHSSAKRVAVIGAGVSGLAAAYKLKI-HGLNVTVFEAEG 46
>3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas;
HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB:
3nye_A* 3nyf_A* 3sm8_A*
Length = 381
Score = 39.1 bits (92), Expect = 0.002
Identities = 10/36 (27%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Query: 23 EYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDE 58
E D++++GAG+ G + LS +V+++E +
Sbjct: 9 EADYLVIGAGIAGASTGYWLSA--HGRVVVLEREAQ 42
>4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine
dinucleotide, isomerase; HET: FAD UDP; 2.25A
{Trypanosoma cruzi} PDB: 4dsh_A*
Length = 484
Score = 39.1 bits (90), Expect = 0.002
Identities = 12/35 (34%), Positives = 16/35 (45%)
Query: 24 YDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDE 58
+I+GAG G A RL+E+ L E D
Sbjct: 10 PKIVIIGAGPTGLGAAVRLTELGYKNWHLYECNDT 44
>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A
{Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A*
2yg7_A* 3rha_A*
Length = 453
Score = 39.0 bits (91), Expect = 0.002
Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 3/39 (7%)
Query: 23 EYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDEDRI 61
+ D IVGAG G A L + V +IEA DR+
Sbjct: 5 QRDVAIVGAGPSGLAAATALRKA-GLSVAVIEA--RDRV 40
>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase,
inhibitor binding, rasagiline, enantioselectivity,
oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens}
SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A*
1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A*
2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A*
2v60_A* 2v61_A* 2vrl_A* ...
Length = 520
Score = 38.7 bits (90), Expect = 0.003
Identities = 13/45 (28%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
Query: 22 DEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDED--RIFTD 64
++ D ++VG G+ G A L + V+++EA D R +T
Sbjct: 3 NKCDVVVVGGGISGMAAAKLLHDSG-LNVVVLEARDRVGGRTYTL 46
>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD;
HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB:
2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A*
Length = 424
Score = 38.3 bits (89), Expect = 0.003
Identities = 8/39 (20%), Positives = 14/39 (35%), Gaps = 2/39 (5%)
Query: 23 EYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDEDRI 61
+ I+GAG G L + ++E D +
Sbjct: 6 DSRIAIIGAGPAGLAAGMYLEQAGFHDYTILER--TDHV 42
>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO,
variegate porphyria disease, VP
oxidoreductase-oxidoreductase inhibitor complex; HET:
ACJ FAD; 1.90A {Homo sapiens}
Length = 477
Score = 38.5 bits (89), Expect = 0.003
Identities = 9/32 (28%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 27 IIVGAGVGGCVVAHRLSEV-PSWKVLLIEAGD 57
+++G G+ G ++ LS KV+L+E+ +
Sbjct: 6 VVLGGGISGLAASYHLSRAPCPPKVVLVESSE 37
>2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase,
geranylgeranylation, vesicular transport, protein
transport; HET: GDP GER; 1.48A {Saccharomyces
cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G*
3cpi_G 3cph_G 3cpj_G*
Length = 453
Score = 38.3 bits (88), Expect = 0.004
Identities = 18/62 (29%), Positives = 27/62 (43%), Gaps = 5/62 (8%)
Query: 22 DEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEA----GDEDRIFTDLVLISHYYQFTPY 77
+YD I++G G+ C+++ LS V KVL I+ G E T L + Q
Sbjct: 10 TDYDVIVLGTGITECILSGLLS-VDGKKVLHIDKQDHYGGEAASVTLSQLYEKFKQNPIS 68
Query: 78 NW 79
Sbjct: 69 KE 70
>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol
biosynthesis, halogenation reaction, structural
genomics; HET: FAD; 2.20A {Streptomyces venezuelae}
Length = 591
Score = 38.0 bits (88), Expect = 0.004
Identities = 9/39 (23%), Positives = 12/39 (30%), Gaps = 1/39 (2%)
Query: 22 DEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDEDR 60
I+G G G V L + V + E R
Sbjct: 22 TRSKVAIIGGGPAGSVAGLTLHK-LGHDVTIYERSAFPR 59
>1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution,
hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3
d.16.1.6 PDB: 1lv0_A* 1gnd_A
Length = 433
Score = 37.9 bits (87), Expect = 0.004
Identities = 12/36 (33%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Query: 22 DEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD 57
+EYD I++G G+ C+++ +S V KVL ++
Sbjct: 5 EEYDVIVLGTGLTECILSGIMS-VNGKKVLHMDRNP 39
>3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for
structural genomics, JCSG, protein structure INI PSI-2;
HET: FAD; 2.06A {Exiguobacterium sibiricum}
Length = 475
Score = 37.7 bits (87), Expect = 0.005
Identities = 11/35 (31%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 24 YDFIIVGAGVGGCVVAHRLS-EVPSWKVLLIEAGD 57
+IVG G+ G A+ P + L+EAG+
Sbjct: 5 KRLVIVGGGITGLAAAYYAERAFPDLNITLLEAGE 39
>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis,
chlorophyll biosynthesis, oxidoreductase, HAEM
biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A
{Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB:
2ive_A*
Length = 478
Score = 37.3 bits (86), Expect = 0.007
Identities = 10/34 (29%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 24 YDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD 57
+ +VG G+ G VAH L +L+E+
Sbjct: 17 MNVAVVGGGISGLAVAHHLRSRG-TDAVLLESSA 49
>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride
transfer mechanism, GR2-family, flavoenzyme, FAD
containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB:
2jb1_A* 2jb2_A* 2jb3_A*
Length = 489
Score = 37.2 bits (86), Expect = 0.008
Identities = 10/38 (26%), Positives = 18/38 (47%), Gaps = 3/38 (7%)
Query: 24 YDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDEDRI 61
+ +++G G G A L + +KV ++EA R
Sbjct: 12 HSVVVLGGGPAGLCSAFELQKA-GYKVTVLEAR--TRP 46
>1yvv_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4,
X-RAY, structure, PSI, protein structure initiative;
HET: FAD; 2.50A {Pseudomonas syringae} PDB: 3kkj_A*
Length = 336
Score = 36.9 bits (84), Expect = 0.008
Identities = 8/33 (24%), Positives = 13/33 (39%), Gaps = 1/33 (3%)
Query: 25 DFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD 57
I+G G+ G A L+ +V L +
Sbjct: 4 PIAIIGTGIAGLSAAQALTAA-GHQVHLFDKSR 35
>3h28_A Sulfide-quinone reductase; monotopic membrane protein,
flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ
LMT; 2.00A {Aquifex aeolicus} PDB: 3h27_A* 3h29_A*
3hyv_A* 3hyw_A* 3hyx_A*
Length = 430
Score = 37.0 bits (86), Expect = 0.008
Identities = 11/48 (22%), Positives = 18/48 (37%), Gaps = 12/48 (25%)
Query: 27 IIVGAGVGGCVVAHRLSE-VPSWKVLLIEAGDEDRIFTDLVLISHYYQ 73
+++G GVGG A+ L +P K+ LI +
Sbjct: 6 VVIGGGVGGIATAYNLRNLMPDLKITLISDRPY-----------FGFT 42
>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm,
FAD, flavoprotein, oxidoreductase, porphyrin
biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis}
Length = 470
Score = 36.9 bits (85), Expect = 0.010
Identities = 8/41 (19%), Positives = 17/41 (41%), Gaps = 5/41 (12%)
Query: 22 DEYDFIIVGAGVGGCVVAHRLS-----EVPSWKVLLIEAGD 57
+ +I+G G+ G A + + ++ L+EA
Sbjct: 4 GKKHVVIIGGGITGLAAAFYMEKEIKEKNLPLELTLVEASP 44
>1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD biosynthesis,
FAD, oxidoreductase; 2.20A {Escherichia coli} SCOP:
a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1knr_A* 1knp_A*
Length = 540
Score = 36.9 bits (86), Expect = 0.011
Identities = 9/31 (29%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Query: 23 EYDFIIVGAGVGGCVVAHRLSEVPSWKVLLI 53
D +I+G+G G +A RL+ +V+++
Sbjct: 8 SCDVLIIGSGAAGLSLALRLA--DQHQVIVL 36
>1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A
{Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A*
3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A*
3cnt_B* 1yy5_A* 1xpq_A*
Length = 516
Score = 36.7 bits (84), Expect = 0.012
Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Query: 23 EYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDEDRI 61
+ II+GAG+ G A L + L++EA DR+
Sbjct: 8 KKKVIIIGAGIAGLKAASTLHQNGIQDCLVLEA--RDRV 44
>3da1_A Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9KDW6 X-RAY,
structural genomics, PSI-2, protein structure
initiative; HET: FAD; 2.70A {Bacillus halodurans}
Length = 561
Score = 36.5 bits (85), Expect = 0.013
Identities = 12/56 (21%), Positives = 25/56 (44%), Gaps = 13/56 (23%)
Query: 7 APKREEFLYGNKRLLDE-YDFIIVGAGVGGCVVAH----RLSEVPSWKVLLIEAGD 57
A KR++ + + ++ D +++G G+ G +A R + L+E D
Sbjct: 4 AKKRDKCI---GEMSEKQLDLLVIGGGITGAGIALDAQVR-----GIQTGLVEMND 51
>3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein,
structural genomics, PSI-2, protein structure
initiative; HET: FAD; 2.30A {Chromobacterium violaceum
atcc 12472}
Length = 381
Score = 36.3 bits (83), Expect = 0.015
Identities = 12/37 (32%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 27 IIVGAGVGGCVVAHRLSE-VPSWKVLLIEAGDEDRIF 62
+++GAG G V A +L + P W + ++E DE +
Sbjct: 4 LVIGAGPAGLVFASQLKQARPLWAIDIVEKNDEQEVL 40
>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex,
oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus
horikoshii}
Length = 382
Score = 36.0 bits (84), Expect = 0.015
Identities = 9/35 (25%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 22 DEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAG 56
++ + +++G G+ G +AH L++ +V +IE
Sbjct: 4 EKSEIVVIGGGIVGVTIAHELAKR-GEEVTVIEKR 37
>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM
FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3
c.3.1.4 d.168.1.1
Length = 566
Score = 36.2 bits (84), Expect = 0.017
Identities = 10/54 (18%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
Query: 272 VIKNSRVVKIIIDPISKQAKGVELVKNGHKRSVFARKEVIVSSGAF-NSPKLLM 324
NSRVVK++++ G + + K V++++G + + +++
Sbjct: 267 TRLNSRVVKLVVND-DHSVVGAVVHGKHTGYYMIGAKSVVLATGGYGMNKEMIA 319
Score = 32.0 bits (73), Expect = 0.34
Identities = 7/33 (21%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Query: 22 DEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIE 54
+ ++VGAG G + + + V+L++
Sbjct: 120 ETTQVLVVGAGSAGFNASLAAKKAGA-NVILVD 151
>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction
mechanism, sustrat binding, oxidoreductase; HET: NAG
FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP:
c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A*
1tdn_A* 1tdo_A* 3kve_A* 4e0v_A*
Length = 498
Score = 36.0 bits (83), Expect = 0.017
Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
Query: 23 EYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDEDRI 61
+IVGAG+ G A+ L+ +V ++EA +R
Sbjct: 33 PKHVVIVGAGMAGLSAAYVLAGA-GHQVTVLEAS--ERP 68
>4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase,
dehydogenase, steroid catabolism; HET: FAD; 1.60A
{Rhodococcus jostii} PDB: 4at2_A*
Length = 510
Score = 36.1 bits (84), Expect = 0.018
Identities = 11/53 (20%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 265 IDRTNLHVIKNSRVVKIIIDPISKQAKGVELVKNGHKRSVFARKEVIVSSGAF 317
++ + + RV ++ D + + G+ + G + +V AR+ V++++G+F
Sbjct: 212 AEKLGVRAEYDMRVQTLVTDD-TGRVVGIVAKQYGKEVAVRARRGVVLATGSF 263
Score = 31.9 bits (73), Expect = 0.32
Identities = 8/36 (22%), Positives = 16/36 (44%), Gaps = 1/36 (2%)
Query: 22 DEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD 57
E D ++ G G+ G + + + VL++E
Sbjct: 40 YEADVVVAGYGIAGVAASIEAARAGA-DVLVLERTS 74
>2rgh_A Alpha-glycerophosphate oxidase; flavoprotein oxidase,
oxidoreductase; HET: FAD; 2.30A {Streptococcus SP} PDB:
2rgo_A*
Length = 571
Score = 35.8 bits (83), Expect = 0.021
Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 13/56 (23%)
Query: 7 APKREEFLYGNKRLLDE-YDFIIVGAGVGGCVVA----HRLSEVPSWKVLLIEAGD 57
R++ + +++ E D +I+G G+ G VA K LIE D
Sbjct: 18 NKTRQDSI---QKMQQEELDLLIIGGGITGAGVAVQAAAS-----GIKTGLIEMQD 65
>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone
oxidoreductase, Cys356Ala variant, integral membrane
protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus
ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A*
3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A*
3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A*
Length = 437
Score = 35.5 bits (82), Expect = 0.027
Identities = 13/49 (26%), Positives = 19/49 (38%), Gaps = 13/49 (26%)
Query: 27 IIVGAGVGGCVVAHRLSEV--PSWKVLLIEAGDEDRIFTDLVLISHYYQ 73
+I+GAG GG A+ + E +V LI A D +
Sbjct: 8 VILGAGTGGMPAAYEMKEALGSGHEVTLISANDY-----------FQFV 45
>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin
contain oxidoreductase, monoamine oxidase, NAD,
extracellular, oxidoreductase; HET: FAD; 2.50A {Homo
sapiens}
Length = 342
Score = 34.7 bits (78), Expect = 0.039
Identities = 8/34 (23%), Positives = 14/34 (41%), Gaps = 2/34 (5%)
Query: 25 DFIIVGAGVGGCVVAHRLSE--VPSWKVLLIEAG 56
+IVGAG+ G + A L + + +
Sbjct: 3 QVLIVGAGMTGSLCAALLRRQTSGPLYLAVWDKA 36
>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD;
2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4
d.168.1.1 PDB: 1d4e_A* 1d4c_A*
Length = 572
Score = 34.7 bits (80), Expect = 0.047
Identities = 14/61 (22%), Positives = 27/61 (44%), Gaps = 2/61 (3%)
Query: 265 IDRTNLHVIKNSRVVKIIIDPISKQAKGVELVKNGHKRSVFARKEVIVSSGAF-NSPKLL 323
+ + NSRVV+I+ D S + GV + V V++++G F + + +
Sbjct: 265 AVKRGTDIRLNSRVVRILEDA-SGKVTGVLVKGEYTGYYVIKADAVVIAAGGFAKNNERV 323
Query: 324 M 324
Sbjct: 324 S 324
Score = 32.4 bits (74), Expect = 0.27
Identities = 10/33 (30%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 22 DEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIE 54
+ D +I+G+G G A + + KV+L+E
Sbjct: 125 ETTDVVIIGSGGAGLAAAVSARDAGA-KVILLE 156
>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin
regulator, histone inhibitor binding, methylation,
nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A
{Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A*
2xas_A* 2com_A
Length = 852
Score = 35.0 bits (79), Expect = 0.049
Identities = 15/45 (33%), Positives = 20/45 (44%), Gaps = 3/45 (6%)
Query: 22 DEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDED--RIFTD 64
II+G+GV G A +L V L+EA D R+ T
Sbjct: 277 KTGKVIIIGSGVSGLAAARQLQSF-GMDVTLLEARDRVGGRVATF 320
>1jnr_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A
{Archaeoglobus fulgidus dsm 4304} SCOP: a.7.3.1 c.3.1.4
d.168.1.1 PDB: 1jnz_A* 2fjb_A* 2fja_A* 2fjd_A* 2fje_A*
Length = 643
Score = 34.8 bits (80), Expect = 0.050
Identities = 12/35 (34%), Positives = 17/35 (48%), Gaps = 3/35 (8%)
Query: 23 EYDFIIVGAGVGGCVVAHRLSEV---PSWKVLLIE 54
E D +I+G G GC A+ + KV L+E
Sbjct: 22 ETDILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVE 56
>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase,
oxidoreductase; HET: FAD; 1.60A {Pseudomonas
aeruginosa} PDB: 1zx9_A*
Length = 467
Score = 34.4 bits (80), Expect = 0.056
Identities = 9/35 (25%), Positives = 14/35 (40%), Gaps = 1/35 (2%)
Query: 22 DEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAG 56
++G+G A + E +V LIE G
Sbjct: 3 PPVQVAVIGSGGAAMAAALKAVEQ-GAQVTLIERG 36
>1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing
protein, oxidoreductase; HET: FAD; 1.20A
{Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB:
1c0i_A* 1c0l_A* 1c0k_A*
Length = 363
Score = 33.9 bits (77), Expect = 0.074
Identities = 7/32 (21%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 25 DFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAG 56
+++G+GV G A L+ + V ++
Sbjct: 8 RVVVLGSGVIGLSSALILAR-KGYSVHILARD 38
>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold,
oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens}
PDB: 3h8i_A*
Length = 409
Score = 33.9 bits (78), Expect = 0.079
Identities = 7/49 (14%), Positives = 15/49 (30%), Gaps = 13/49 (26%)
Query: 27 IIVGAGVGGCVVAHRLSEV--PSWKVLLIEAGDEDRIFTDLVLISHYYQ 73
+++G G A+ L + V +I Y++
Sbjct: 5 LVLGGRFGALTAAYTLKRLVGSKADVKVINKSRF-----------SYFR 42
>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein,
oxidoreductase, enantioselectivity, directed evolution
variant; HET: FAD; 1.85A {Aspergillus niger} PDB:
2vvl_A* 2vvl_G*
Length = 495
Score = 33.8 bits (77), Expect = 0.085
Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 3/43 (6%)
Query: 24 YDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDE--DRIFTD 64
+D I++G G G L+ +K LL+EA D R ++
Sbjct: 40 WDVIVIGGGYCGLTATRDLTV-AGFKTLLLEARDRIGGRSWSS 81
>1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase,
oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays}
SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A*
1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A*
Length = 472
Score = 33.7 bits (77), Expect = 0.096
Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Query: 24 YDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDEDRI 61
I+VGAG+ G A RLSE +L++EA D I
Sbjct: 5 PRVIVVGAGMSGISAAKRLSEAGITDLLILEA--TDHI 40
>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome,
mesaconate, oxidoreductase; HET: HEM FAD; 1.50A
{Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4
d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A*
1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A*
1q9i_A* 1lj1_A*
Length = 571
Score = 33.5 bits (77), Expect = 0.11
Identities = 10/61 (16%), Positives = 26/61 (42%), Gaps = 2/61 (3%)
Query: 265 IDRTNLHVIKNSRVVKIIIDPISKQAKGVELVKNGHKRSVFARKEVIVSSGAF-NSPKLL 323
+ N+ + N+R ++++ D KG+ + VI+++G F + + +
Sbjct: 265 AVKRNIDLRMNTRGIEVLKDD-KGTVKGILVKGMYKGYYWVKADAVILATGGFAKNNERV 323
Query: 324 M 324
Sbjct: 324 A 324
Score = 32.4 bits (74), Expect = 0.24
Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 22 DEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIE 54
D D ++VG+G G A ++ + KV+LIE
Sbjct: 125 DTVDVVVVGSGGAGFSAAISATDSGA-KVILIE 156
>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome,
transcription, LSD1, alternative splicing, chromatin
regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens}
SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A*
3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A*
2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A
Length = 662
Score = 33.7 bits (76), Expect = 0.11
Identities = 15/45 (33%), Positives = 20/45 (44%), Gaps = 3/45 (6%)
Query: 22 DEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDED--RIFTD 64
II+G+GV G A +L V L+EA D R+ T
Sbjct: 106 KTGKVIIIGSGVSGLAAARQLQSF-GMDVTLLEARDRVGGRVATF 149
>3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta
strands, dimer, cavity, oxidoreductase; 2.30A
{Pseudomonas putida}
Length = 430
Score = 33.3 bits (75), Expect = 0.13
Identities = 10/43 (23%), Positives = 15/43 (34%), Gaps = 1/43 (2%)
Query: 27 IIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDEDRIFTDLVLIS 69
IVGAG G + L + V + D +L +
Sbjct: 26 GIVGAGTAGLHLGLFLRQ-HDVDVTVYTDRKPDEYSGLRLLNT 67
>3gyx_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A
{Desulfovibrio gigas}
Length = 662
Score = 33.1 bits (75), Expect = 0.15
Identities = 12/43 (27%), Positives = 19/43 (44%), Gaps = 5/43 (11%)
Query: 23 EYDFIIVGAGVGGCVVAHRLSEV-----PSWKVLLIEAGDEDR 60
D ++VG G+G C A P K+LL++ +R
Sbjct: 22 SVDLLMVGGGMGNCGAAFEAVRWADKYAPEAKILLVDKASLER 64
>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB;
TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus
rimd 2210633}
Length = 183
Score = 32.0 bits (73), Expect = 0.17
Identities = 9/41 (21%), Positives = 12/41 (29%), Gaps = 1/41 (2%)
Query: 21 LDEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDEDRI 61
+I+G G G L L IE E+
Sbjct: 37 PGHAQVLILGMGRIGTGAYDELRARYGKISLGIEI-REEAA 76
>2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate
dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A
{Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A*
Length = 501
Score = 32.6 bits (75), Expect = 0.20
Identities = 12/41 (29%), Positives = 20/41 (48%), Gaps = 9/41 (21%)
Query: 21 LDEYDFIIVGAGVGGCVVAH----RLSEVPSWKVLLIEAGD 57
++ D I++G G+ G +A R VL++EA D
Sbjct: 1 METKDLIVIGGGINGAGIAADAAGR-----GLSVLMLEAQD 36
>2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical
bundle, sandwiched sheets, structural genomics; HET: TRP
FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A*
2ar8_A* 2ard_A* 2jkc_A*
Length = 538
Score = 32.7 bits (73), Expect = 0.20
Identities = 22/164 (13%), Positives = 39/164 (23%), Gaps = 7/164 (4%)
Query: 27 IIVGAGVGGCVVAHRLSEV--PSWKVLLIEAGDEDRIFTDLVLISHYYQFTPYNWGFKTT 84
+IVG G G + A L + LIE+ RI I + G
Sbjct: 9 VIVGGGTAGWMAASYLVRALQQQANITLIESAAIPRIGVGEATIPSLQKVFFDFLGIPER 68
Query: 85 ---PQKNACLGLPNNQCLW-PQGKGVGGSTIINGNIFTRGFPNDFNEWESLGNTGWSFDD 140
PQ N W + L F
Sbjct: 69 EWMPQVNGAFKAAIKFVNWRKSPDPSRDDHFYHLFGNVPNCDGVPLTHYWLRKREQGFQQ 128
Query: 141 VLKYFKKFERINIPELNSDTVYHNTNGLLNVEYSPYKSKLSDIF 184
++Y + + + + ++ + ++D
Sbjct: 129 PMEYA-CYPQPGALDGKLAPCLSDGTRQMSHAWHFDAHLVADFL 171
>3g3e_A D-amino-acid oxidase; FAD, flavoprotein, oxidoreductase, PER;
HET: FAD G3E; 2.20A {Homo sapiens} PDB: 3cuk_A* 2e48_A*
2e49_A* 2e4a_A* 2e82_A* 2du8_A* 1ve9_A* 1dao_A* 1ddo_A*
1kif_A* 1an9_A* 1evi_A*
Length = 351
Score = 32.4 bits (73), Expect = 0.22
Identities = 7/18 (38%), Positives = 11/18 (61%)
Query: 27 IIVGAGVGGCVVAHRLSE 44
+++GAGV G A + E
Sbjct: 4 VVIGAGVIGLSTALCIHE 21
>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET:
BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8
d.58.1.6 PDB: 2gmj_A*
Length = 584
Score = 32.5 bits (74), Expect = 0.27
Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 6/43 (13%)
Query: 19 RLLDEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDEDRI 61
R +E D +IVGAG G A RL K L + + R+
Sbjct: 31 RFAEEADVVIVGAGPAGLSAATRL------KQLAAQHEKDLRV 67
>3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266,
NESG, PAR240, structural genomics, PSI-2; HET: FAD;
1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2
d.16.1.2 PDB: 2rgj_A*
Length = 410
Score = 32.3 bits (74), Expect = 0.28
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 27 IIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDE 58
+I GAG+GG A L + KV L+E+ E
Sbjct: 8 LIAGAGIGGLSCALALHQAGIGKVTLLESSSE 39
>2weu_A Tryptophan 5-halogenase; regioselectivity, antifungal protei;
HET: TRP; 1.70A {Streptomyces rugosporus} PDB: 2wet_A*
2wes_A*
Length = 511
Score = 32.4 bits (72), Expect = 0.29
Identities = 15/50 (30%), Positives = 20/50 (40%), Gaps = 2/50 (4%)
Query: 27 IIVGAGVGGCVVAHRLSEV--PSWKVLLIEAGDEDRIFTDLVLISHYYQF 74
+IVG G G + A L V L+E+G+ RI S F
Sbjct: 6 VIVGGGTAGWMTASYLKAAFDDRIDVTLVESGNVRRIGVGEATFSTVRHF 55
>1w55_A ISPD/ISPF bifunctional enzyme; biosynthetic pathway, isoprenoids,
nonmevalonate, transferase; HET: C GPP; 2.3A
{Campylobacter jejuni} SCOP: c.68.1.13 d.79.5.1 PDB:
1w57_A*
Length = 371
Score = 31.8 bits (73), Expect = 0.32
Identities = 19/95 (20%), Positives = 31/95 (32%), Gaps = 21/95 (22%)
Query: 250 NGRRMTAS--KAYL----KPIIDRTNLHVIKNSRVVKIIIDP-----ISKQAKGVELVKN 298
N R K +L P+ ++ KI++ + K K E ++
Sbjct: 13 NSTRFNTKVKKQFLRLGNDPLWLYATKNLSSFYPFKKIVVTSSNITYMKKFTKNYEFIEG 72
Query: 299 GHKR--SVFA------RKEVIVSSGA--FNSPKLL 323
G R S+ + V+VS A S L
Sbjct: 73 GDTRAESLKKALELIDSEFVMVSDVARVLVSKNLF 107
>3ayj_A Pro-enzyme of L-phenylalanine oxidase; amino acid oxidase,
flavoenzyme, L- binding, oxidoreductase; HET: FAD PHE;
1.10A {Pseudomonas} PDB: 2yr4_A* 2yr6_A* 3ayi_A* 2yr5_A*
3ayl_A*
Length = 721
Score = 32.1 bits (71), Expect = 0.38
Identities = 10/45 (22%), Positives = 15/45 (33%), Gaps = 7/45 (15%)
Query: 27 IIVGAGVGGCVVAHRLSEV-------PSWKVLLIEAGDEDRIFTD 64
IVG G GG + L + V + EA + +
Sbjct: 60 AIVGGGAGGIAALYELGRLAATLPAGSGIDVQIYEADPDSFLHDR 104
>2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo
oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}
Length = 376
Score = 31.5 bits (70), Expect = 0.49
Identities = 12/35 (34%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Query: 27 IIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDEDRI 61
+IVGAG+ G V L+ V ++EA + +R+
Sbjct: 48 LIVGAGIAGLVAGDLLTRA-GHDVTILEA-NANRV 80
>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD;
2.72A {Stenotrophomonas maltophilia}
Length = 357
Score = 31.2 bits (71), Expect = 0.50
Identities = 7/39 (17%), Positives = 16/39 (41%), Gaps = 5/39 (12%)
Query: 22 DEYDFIIVGAGVGGCVVAHRLSE--VPSWKVLLIEAGDE 58
D D +++G G G + L + ++++A
Sbjct: 2 DSVDVVVIGGGQSGLSAGYFLRRSGLS---YVILDAEAS 37
>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis,
sleeping sickness, flavoPro redox-active center; HET:
FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A*
2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A*
1nda_A* 1gxf_A* 1bzl_A* 1aog_A*
Length = 495
Score = 31.4 bits (72), Expect = 0.59
Identities = 7/33 (21%), Positives = 17/33 (51%)
Query: 23 EYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEA 55
+D +++GAG GG + + +V +++
Sbjct: 7 AFDLVVIGAGSGGLEAGWNAATLYGKRVAVVDV 39
>1fec_A Trypanothione reductase; redox-active center, oxidoreductase,
flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia
fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB:
1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A*
2yau_A* 2x50_A* 2ve2_A*
Length = 490
Score = 31.0 bits (71), Expect = 0.74
Identities = 10/45 (22%), Positives = 18/45 (40%)
Query: 23 EYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDEDRIFTDLVL 67
YD +++GAG GG + + +V +I+ L
Sbjct: 3 AYDLVVIGAGSGGLEAGWNAASLHKKRVAVIDLQKHHGPPHYAAL 47
>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD;
1.75A {Pseudomonas aeruginosa}
Length = 399
Score = 30.7 bits (70), Expect = 0.87
Identities = 11/38 (28%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Query: 23 EYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDEDR 60
D +I G G+GG ++A+ L +V+++E +R
Sbjct: 6 HIDVLINGCGIGGAMLAYLLGRQG-HRVVVVEQARRER 42
>2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis,
biosynthetic protein, flavoprotein; HET: TRP; 2.08A
{Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A*
2oal_A* 2oam_A
Length = 550
Score = 30.9 bits (68), Expect = 0.88
Identities = 10/37 (27%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
Query: 27 IIVGAGVGGCVVAHRLSEV--PSWKVLLIEAGDEDRI 61
+IVG G G + A L + + + L++A D +
Sbjct: 29 LIVGGGTAGWMAASYLGKALQGTADITLLQAPDIPTL 65
>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H,
structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia
psychrerythraea}
Length = 492
Score = 30.6 bits (70), Expect = 0.98
Identities = 11/34 (32%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 23 EYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAG 56
D I+G G G + + KV+LIE G
Sbjct: 8 NVDVAIIGTGTAGMGAYRAAKKH-TDKVVLIEGG 40
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A
{Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19
c.37.1.19
Length = 780
Score = 30.7 bits (70), Expect = 1.1
Identities = 10/23 (43%), Positives = 14/23 (60%), Gaps = 2/23 (8%)
Query: 325 LSGVGPR--EHLTELGIPVVQDL 345
GVGP + L +LGI ++DL
Sbjct: 120 AKGVGPNRKKKLKKLGIETLRDL 142
>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural
genomics, PSI-2, protein STRU initiative; HET: AMP;
2.10A {Pyrococcus furiosus}
Length = 421
Score = 30.4 bits (69), Expect = 1.2
Identities = 8/31 (25%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 27 IIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD 57
++VGAG+GG + L+ +++++E
Sbjct: 4 VVVGAGLGGLLAGAFLARN-GHEIIVLEKSA 33
>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD;
1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
PDB: 1geu_A* 1ger_A* 1get_A*
Length = 450
Score = 30.2 bits (69), Expect = 1.2
Identities = 13/34 (38%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 23 EYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAG 56
YD+I +G G GG +R + K LIEA
Sbjct: 4 HYDYIAIGGGSGGIASINRAAMYGQ-KCALIEAK 36
>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc
genomics, joint center for structural genomics, JCSG;
HET: FAD UNL; 2.40A {Staphylococcus aureus}
Length = 369
Score = 29.8 bits (67), Expect = 1.4
Identities = 10/35 (28%), Positives = 17/35 (48%)
Query: 23 EYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD 57
+ I+GAG G +A L + V+++E G
Sbjct: 4 HHKVAIIGAGAAGIGMAITLKDFGITDVIILEKGT 38
>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic
hydroxylase, nicotine degradation, mono-oxygenase; HET:
FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2
d.16.1.2
Length = 397
Score = 30.0 bits (68), Expect = 1.5
Identities = 7/29 (24%), Positives = 11/29 (37%), Gaps = 1/29 (3%)
Query: 27 IIVGAGVGGCVVAHRLSEVPSWKVLLIEA 55
+VG + G A L + V + E
Sbjct: 9 AVVGGSISGLTAALMLRDA-GVDVDVYER 36
>3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG,
structural genomics, PSI-2, prote structure initiative;
HET: FAD; 2.15A {Vibrio parahaemolyticus}
Length = 549
Score = 29.6 bits (66), Expect = 1.7
Identities = 10/55 (18%), Positives = 19/55 (34%), Gaps = 1/55 (1%)
Query: 4 ITLAPKREEFLYGNKRLLDEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDE 58
+ P E I++G G G L++ + +++E G E
Sbjct: 88 VRQTPDMEYKFVAKAPENLTERPIVIGFGPCGLFAGLVLAQ-MGFNPIIVERGKE 141
>3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta
fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium
loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A*
3alm_A* 3all_A*
Length = 379
Score = 29.6 bits (67), Expect = 1.7
Identities = 10/32 (31%), Positives = 12/32 (37%), Gaps = 1/32 (3%)
Query: 27 IIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDE 58
+ G G G A L + W V L E E
Sbjct: 15 EVAGGGFAGLTAAIALKQ-NGWDVRLHEKSSE 45
>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein,
FAD, mitochondrion, redox-active center, selenium,
selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus
musculus} PDB: 1zkq_A* 1zdl_A*
Length = 488
Score = 29.8 bits (68), Expect = 1.8
Identities = 8/34 (23%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 23 EYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAG 56
+D +++G G GG A +++ KV + +
Sbjct: 6 SFDLLVIGGGSGGLACAKEAAQLGK-KVAVADYV 38
>2cul_A Glucose-inhibited division protein A-related PROT probable
oxidoreductase; rossmann fold, protein-FAD complex;
HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7
Length = 232
Score = 29.1 bits (66), Expect = 2.1
Identities = 7/16 (43%), Positives = 9/16 (56%)
Query: 21 LDEYDFIIVGAGVGGC 36
+ Y +IVGAG G
Sbjct: 1 MAAYQVLIVGAGFSGA 16
>2e5v_A L-aspartate oxidase; archaea, oxidoreductase; HET: FAD; 2.09A
{Sulfolobus tokodaii}
Length = 472
Score = 29.5 bits (67), Expect = 2.1
Identities = 9/33 (27%), Positives = 13/33 (39%), Gaps = 1/33 (3%)
Query: 27 IIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDED 59
I+G+G+ G L KV LI +
Sbjct: 3 YIIGSGIAGLSAGVALRRAGK-KVTLISKRIDG 34
>2h88_A Succinate dehydrogenase flavoprotein subunit; complex II,
membrane protein, heme protein, iron sulfur PROT
cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL;
1.74A {Gallus gallus} PDB: 1yq4_A* 1yq3_A* 2fbw_A*
2h89_A* 2wqy_A* 1zoy_A* 1zp0_A* 3abv_A* 3ae1_A* 3ae2_A*
3ae3_A* 3ae4_A* 3ae5_A* 3ae6_A* 3ae7_A* 3ae8_A* 3ae9_A*
3aea_A* 3aeb_A* 3aec_A* ...
Length = 621
Score = 29.6 bits (67), Expect = 2.2
Identities = 11/31 (35%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Query: 23 EYDFIIVGAGVGGCVVAHRLSEVPSWKVLLI 53
E+D ++VGAG G A LSE + +
Sbjct: 18 EFDAVVVGAGGAGLRAAFGLSE-AGFNTACV 47
>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain,
oxidor; HET: FAD KPC; 1.65A {Xanthobacter
autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB:
1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*
Length = 523
Score = 29.6 bits (67), Expect = 2.2
Identities = 13/52 (25%), Positives = 23/52 (44%), Gaps = 2/52 (3%)
Query: 7 APKREEFLY-GNKRLLDEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD 57
AP E +Y ++ EYD I +G G G + L + + L+++
Sbjct: 26 APDGGEVIYNVDENDPREYDAIFIGGGAAGRFGSAYLRAM-GGRQLIVDRWP 76
>1vg0_A RAB proteins geranylgeranyltransferase component A 1; RAB
prenylation, post-translational modification, protein
binding/protein transport complex; HET: GER GDP PG4;
2.20A {Rattus norvegicus} SCOP: c.3.1.3 d.16.1.6 PDB:
1vg9_A* 1ltx_R*
Length = 650
Score = 29.5 bits (65), Expect = 2.2
Identities = 6/22 (27%), Positives = 13/22 (59%)
Query: 22 DEYDFIIVGAGVGGCVVAHRLS 43
++D I++G G+ ++A S
Sbjct: 7 SDFDVIVIGTGLPESIIAAACS 28
>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase,
rossmann, flavoprotein, alternative initiati
mitochondrion, NADP; HET: FAD; 1.75A {Drosophila
melanogaster} PDB: 2nvk_X* 3dh9_A*
Length = 483
Score = 29.4 bits (67), Expect = 2.2
Identities = 8/33 (24%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
Query: 23 EYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEA 55
+YD I++G G G A + +V ++
Sbjct: 9 DYDLIVIGGGSAGLACAKEAVLNGA-RVACLDF 40
>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin,
bacteroides F oxidoreductase; HET: FAD; 2.09A
{Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A*
2y6r_A* 3p9u_A*
Length = 398
Score = 29.3 bits (66), Expect = 2.3
Identities = 6/16 (37%), Positives = 8/16 (50%)
Query: 27 IIVGAGVGGCVVAHRL 42
I+G G G +A L
Sbjct: 30 AIIGGGPVGLTMAKLL 45
>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A
{Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Length = 500
Score = 29.1 bits (66), Expect = 2.5
Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 24 YDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAG 56
YD I++G G GG A R + + KV L+E
Sbjct: 3 YDLIVIGGGSGGMAAARRAARHNA-KVALVEKS 34
>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex,
rossmann fold, HO pyridine nucleotide disulfide
oxidoreductase, electron TRAN oxidoreductase; HET: FAD;
2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A*
2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*
Length = 519
Score = 29.1 bits (66), Expect = 2.6
Identities = 11/33 (33%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 23 EYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEA 55
+YD II+G G GG A ++ KV++++
Sbjct: 32 DYDLIIIGGGSGGLAAAKEAAQYGK-KVMVLDF 63
>2pyx_A Tryptophan halogenase; structural genomics, JOI for structural
genomics, JCSG, protein structure initiative
biosynthetic protein; HET: MSE TLA PG4; 1.50A
{Shewanella frigidimarina}
Length = 526
Score = 29.3 bits (64), Expect = 2.7
Identities = 14/59 (23%), Positives = 18/59 (30%), Gaps = 11/59 (18%)
Query: 27 IIVGAGVGGCVVAHRLS-----------EVPSWKVLLIEAGDEDRIFTDLVLISHYYQF 74
IIVG G G + A L+ P + LIE+ D I
Sbjct: 11 IIVGGGTAGWITAGLLAAEHNVDKGVLAHSPKLNITLIESPDVATIGVGEGTWPSMRST 69
>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity,
oxidoreductase; HET: FAD; 2.10A {Marichromatium
gracile} PDB: 2rab_A*
Length = 463
Score = 29.0 bits (66), Expect = 2.8
Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 23 EYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAG 56
+D I +G G GG VA + + +V LIE+
Sbjct: 4 HFDLIAIGGGSGGLAVAEKAAAF-GKRVALIESK 36
>1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate
binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A
{Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2
d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A*
Length = 830
Score = 28.9 bits (65), Expect = 3.3
Identities = 8/29 (27%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
Query: 27 IIVGAGVGGCVVAHRLSEVPSWK-VLLIE 54
+I+GAG+ G +A L W + +++
Sbjct: 8 VIIGAGIVGTNLADELVTR-GWNNITVLD 35
>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent
N-hydroxylating monooxygenase, CLAS flavin dependent
monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A
{Pseudomonas aeruginosa} PDB: 3s61_A*
Length = 463
Score = 28.9 bits (64), Expect = 3.5
Identities = 12/58 (20%), Positives = 23/58 (39%), Gaps = 4/58 (6%)
Query: 24 YDFIIVGAGVGGCVVAHRLSE----VPSWKVLLIEAGDEDRIFTDLVLISHYYQFTPY 77
+D I VG G +A L E + +VL ++ + R + ++ Q +
Sbjct: 31 HDLIGVGFGPSNIALAIALQERAQAQGALEVLFLDKQGDYRWHGNTLVSQSELQISFL 88
>2qae_A Lipoamide, dihydrolipoyl dehydrogenase;
FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A
{Trypanosoma cruzi}
Length = 468
Score = 28.6 bits (65), Expect = 3.6
Identities = 9/33 (27%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 22 DEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIE 54
+ YD +++G G GG V + + +++ K +E
Sbjct: 1 NPYDVVVIGGGPGGYVASIKAAQL-GMKTACVE 32
>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase;
HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A*
3rp6_A*
Length = 407
Score = 28.4 bits (64), Expect = 3.8
Identities = 11/32 (34%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 27 IIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDE 58
I++GAG+GG A L + + EA E
Sbjct: 27 IVIGAGIGGLSAAVALKQS-GIDCDVYEAVKE 57
>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for
structural genomics, secsg, hyperthermoph protein
structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus
furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Length = 367
Score = 28.3 bits (64), Expect = 4.0
Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 4/45 (8%)
Query: 27 IIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDEDRIFTDLVLISHY 71
+IVG G GG +A +LS+ +++V +I E + ++SHY
Sbjct: 12 VIVGNGPGGFELAKQLSQ--TYEVTVI--DKEPVPYYSKPMLSHY 52
>2vsh_A TARI, 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase;
nucleotidyltransferase; HET: 1PE PG4 P6G; 2.00A
{Streptococcus pneumoniae} PDB: 2vsi_A*
Length = 236
Score = 28.3 bits (64), Expect = 4.0
Identities = 11/40 (27%), Positives = 18/40 (45%), Gaps = 7/40 (17%)
Query: 251 GRRMTAS---KAYL----KPIIDRTNLHVIKNSRVVKIII 283
G RM S K +L +PI+ T + + KI++
Sbjct: 13 GTRMGISNLPKQFLELGDRPILIHTIEKFVLEPSIEKIVV 52
>2x8g_A Thioredoxin glutathione reductase; redox-active center,
detoxification pathway, oxidoreductase, flavoprotein;
HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A*
2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*
Length = 598
Score = 28.5 bits (64), Expect = 4.5
Identities = 8/33 (24%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 23 EYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEA 55
+YD I++G G GG ++ + K +++
Sbjct: 107 DYDLIVIGGGSGGLAAGKEAAKYGA-KTAVLDY 138
>4dna_A Probable glutathione reductase; structural genomics, protein
structure initiative, NEW YORK structural genomix
research consortium; HET: FAD; 2.80A {Sinorhizobium
meliloti}
Length = 463
Score = 28.2 bits (64), Expect = 4.7
Identities = 9/34 (26%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 23 EYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAG 56
+YD ++G G GG + + KV + E
Sbjct: 5 DYDLFVIGGGSGGVRSGRLAAAL-GKKVAIAEEF 37
>2bs2_A Quinol-fumarate reductase flavoprotein subunit A; 2Fe-2S, 3Fe-4S,
4Fe-4S, citric acid cycle, dihaem cytochrome B; HET:
FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP:
a.7.3.1 c.3.1.4 d.168.1.1 PDB: 2bs3_A* 1e7p_A* 2bs4_A*
1qlb_A*
Length = 660
Score = 28.4 bits (64), Expect = 4.8
Identities = 5/31 (16%), Positives = 13/31 (41%), Gaps = 1/31 (3%)
Query: 23 EYDFIIVGAGVGGCVVAHRLSEVPSWKVLLI 53
D +++G G+ G A + +++
Sbjct: 5 YCDSLVIGGGLAGLRAAVATQQ-KGLSTIVL 34
>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle
structural genomics center for infectious gluathione
reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella
henselae}
Length = 484
Score = 28.3 bits (64), Expect = 5.1
Identities = 8/34 (23%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 23 EYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAG 56
++D ++G+G GG A + +V + E
Sbjct: 26 DFDLFVIGSGSGGVRAARLAGALGK-RVAIAEEY 58
>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center,
glycolysis, oxidoreductase; HET: FAD; 2.60A
{Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5
d.87.1.1
Length = 455
Score = 28.2 bits (64), Expect = 5.6
Identities = 14/34 (41%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Query: 23 EYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAG 56
E + ++VGAG GG V A R +++ KV ++E G
Sbjct: 3 ETETLVVGAGPGGYVAAIRAAQL-GQKVTIVEKG 35
>3lgb_A DNA primase large subunit; Fe-S cluster, DNA-binding, DNA-directed
RNA POL iron, iron-sulfur, metal-binding,
nucleotidyltransferase; HET: DNA MSE EPE; 1.54A
{Saccharomyces cerevisiae}
Length = 194
Score = 27.7 bits (61), Expect = 5.6
Identities = 14/51 (27%), Positives = 24/51 (47%), Gaps = 5/51 (9%)
Query: 131 LGNTGWSFDDVLKYFKK-FERINIPELNSDTVY---HNTNGLLN-VEYSPY 176
L G S D+ LK++ + F + + + N + Y HN N + Y P+
Sbjct: 47 LKGIGLSADEALKFWSEAFTNMTMEKFNKEYRYSFRHNYGLEGNRINYKPW 97
>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide,
acetylation, alternative initiation, cytoplasm, FAD,
flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A
{Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A*
1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A*
3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A*
1xan_A* 5grt_A* ...
Length = 478
Score = 28.2 bits (64), Expect = 5.7
Identities = 10/34 (29%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 23 EYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAG 56
YD++++G G GG A R +E+ + + ++E+
Sbjct: 20 SYDYLVIGGGSGGLASARRAAELGA-RAAVVESH 52
>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase;
HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5
d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*
Length = 493
Score = 28.2 bits (63), Expect = 5.9
Identities = 7/38 (18%), Positives = 16/38 (42%), Gaps = 3/38 (7%)
Query: 23 EYDFIIVGAGVGGCVVAHRLSEV-PSWKVLLIEAGDED 59
F+++G G A + P +VL++ ++
Sbjct: 11 HVPFLLIGGGTAAFAAARSIRARDPGARVLIV--SEDP 46
>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural
genomics, PSI-2, protein structure initiative; HET:
ADP; 2.50A {Sulfolobus solfataricus}
Length = 466
Score = 27.9 bits (63), Expect = 6.0
Identities = 11/33 (33%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Query: 22 DEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIE 54
+YD +++GAG G A RL++ + VL+ +
Sbjct: 3 LKYDVVVIGAGGAGYHGAFRLAKA-KYNVLMAD 34
>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed
with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A
{Saccharomyces cerevisiae}
Length = 479
Score = 27.9 bits (63), Expect = 6.2
Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 23 EYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAG 56
YD++++G G GG A R + + K LL+EA
Sbjct: 11 HYDYLVIGGGSGGVASARRAASYGA-KTLLVEAK 43
>2wdq_A Succinate dehydrogenase flavoprotein subunit; succinate
dehydrogenase activity, cell inner membrane, trica acid
cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB:
1nen_A* 2acz_A* 1nek_A* 2wdr_A* 2wdv_A* 2wp9_A* 2ws3_A*
2wu2_A* 2wu5_A*
Length = 588
Score = 28.0 bits (63), Expect = 6.4
Identities = 8/22 (36%), Positives = 15/22 (68%)
Query: 23 EYDFIIVGAGVGGCVVAHRLSE 44
E+D +++GAG G A ++S+
Sbjct: 7 EFDAVVIGAGGAGMRAALQISQ 28
>2wvv_A Alpha-L-fucosidase; alpha-L-fucose, hydrolase, glycoside hydrolase
family 29; 1.73A {Bacteroides thetaiotaomicron} PDB:
2xii_A* 2xib_A* 2wvv_B 2wvt_A* 2wvu_A* 2wvs_A*
Length = 450
Score = 27.8 bits (62), Expect = 6.5
Identities = 11/49 (22%), Positives = 18/49 (36%), Gaps = 7/49 (14%)
Query: 128 WE---SLGNTGWSF--DDVLKYFKKFERINIPELNSDTVYHNTNGLLNV 171
WE ++ W + D L Y K + I + V N ++N
Sbjct: 271 WEACMTIPENQWGYHKDWSLSYVKTPIEV-IDRI-VHAVSMGGNMVVNF 317
>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann,
PSI, M structural genomics; 1.70A {Archaeoglobus
fulgidus}
Length = 141
Score = 26.8 bits (60), Expect = 6.6
Identities = 9/39 (23%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Query: 23 EYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDEDRI 61
Y++I++G+ G + L+ KVL ++ +++I
Sbjct: 6 RYEYIVIGSEAAGVGLVRELTAAGK-KVLAVDK-SKEKI 42
>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex,
pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A
{Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5
d.87.1.1 PDB: 1jeh_A*
Length = 478
Score = 27.9 bits (63), Expect = 6.9
Identities = 8/33 (24%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 22 DEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIE 54
+D +I+G G G V A + +++ + +E
Sbjct: 4 KSHDVVIIGGGPAGYVAAIKAAQL-GFNTACVE 35
>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET:
FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5
d.87.1.1
Length = 499
Score = 27.9 bits (63), Expect = 7.1
Identities = 7/34 (20%), Positives = 14/34 (41%), Gaps = 2/34 (5%)
Query: 23 EYDFIIVGAGVGGCVVAHRLSE--VPSWKVLLIE 54
+I+G G G A + + +V +I+
Sbjct: 2 VTRIVILGGGPAGYEAALVAATSHPETTQVTVID 35
>3nb2_A Secreted effector protein; pentapeptide, HECT domain, HECT E
ubiquitin ligase, ligase; HET: MES; 2.10A {Escherichia
coli} PDB: 3naw_A* 3sqv_A
Length = 613
Score = 28.0 bits (62), Expect = 7.1
Identities = 27/161 (16%), Positives = 49/161 (30%), Gaps = 33/161 (20%)
Query: 95 NNQCLWPQGKGVGGSTIINGNIFTRGFPNDFNEWESLGNTGWSFDDVLKYFKKFERINIP 154
+ L+ G+ N+F+ FP + + + + +
Sbjct: 397 MSFFLYKDGEVQNTFGYSLSNLFSESFP--------IFSIPYHKAFSQNFVSGI----LD 444
Query: 155 ELNSDTVYHNT-NGLLNVEYSPYK-------SKLSDIFLKV--GLFNSDTVYHNTNGLLN 204
L SD LN S YK KL+ ++ G + G
Sbjct: 445 ILISDNELKERFIEALNSNKSDYKMIADDQQRKLACVWNPFLDGWELNAQHVDMIMGSHV 504
Query: 205 VEYSPYKSK------LSDIFLK--SSKELGYTNIDYNNPNT 237
++ P + + L +F K SS G +Y++P
Sbjct: 505 LKDMPLRKQAEILFCLGGVFCKYSSSDMFG---TEYDSPEI 542
>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics,
protein structure initiati YORK structural genomics
research consortium; HET: FAD; 1.90A {Sinorhizobium
meliloti}
Length = 491
Score = 27.5 bits (62), Expect = 7.6
Identities = 12/33 (36%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Query: 22 DEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIE 54
YD I++G+G GG V A + +++ KV ++E
Sbjct: 24 MAYDLIVIGSGPGGYVCAIKAAQL-GMKVAVVE 55
>3osn_A DNA polymerase IOTA; hoogsteen base PAIR, protein-DNA complex,
Y-family DNA polym translesion synthesis, nucleoside
triphosphate; HET: DNA DOC 6OG TTP; 1.90A {Homo sapiens}
PDB: 2dpj_A* 2fll_A* 2fln_A* 2flp_A* 3epg_A* 3epi_A*
2dpi_A* 3g6v_A* 3g6y_A* 3g6x_A* 3gv7_B* 3gv8_B* 3ngd_A*
3gv5_B* 3q8p_B* 3q8q_B* 3q8r_B* 3q8s_B* 3h4d_A* 3h4b_A*
...
Length = 420
Score = 27.7 bits (62), Expect = 7.7
Identities = 9/29 (31%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
Query: 320 PKLLMLSGVGPR--EHLTELGIPVVQDLR 346
+ + G+G + + L LGI V+DL+
Sbjct: 234 NHIKEIPGIGYKTAKCLEALGINSVRDLQ 262
>2aef_A Calcium-gated potassium channel MTHK; rossmann fold,
helix-turn-helix, Ca2+ binding, flexible interface;
1.70A {Methanothermobacterthermautotrophicus} PDB:
2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A
Length = 234
Score = 27.3 bits (61), Expect = 7.8
Identities = 6/36 (16%), Positives = 10/36 (27%), Gaps = 4/36 (11%)
Query: 26 FIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDEDRI 61
+I G L V ++ DE+
Sbjct: 12 VVICGWSESTLECLRELRGSE---VFVLAE-DENVR 43
>2xzm_4 40S ribosomal protein S3A; ribosome, translation; 3.93A
{Tetrahymena thermophila} PDB: 2xzn_4
Length = 265
Score = 27.5 bits (60), Expect = 7.8
Identities = 17/140 (12%), Positives = 46/140 (32%), Gaps = 7/140 (5%)
Query: 213 KLSDIFLKSSKELGYTNIDYNNPNTKIGFSIVQSTIKNGRRMTASKAYLKPIIDRTNLHV 272
K +D ++ L +T + +S+ R + ++ + +
Sbjct: 131 KTNDGYIIRVFTLAFTKKTSAGKQSSTSTCYAKSSQVRAIRRKINT-FITNEAAKLGIAE 189
Query: 273 IKNSRVVKIIIDPISKQAKGVELVKNGHKRSVFARKEVIVSSGAFNSPKLLMLSGVGPRE 332
+ + + I K+ K + ++N + RK ++ ++ K+ L +
Sbjct: 190 FSKNLIGEDYTKKIEKETKNIFPLQN-----ITIRKVKVLKRPKLDATKIAELYSHEKKG 244
Query: 333 HLTELGIPVVQDLRVGDNLM 352
G + + NL+
Sbjct: 245 EKAT-GRDGAPEEQAAQNLL 263
>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme
complex protein, pyruvate dehydrogenase complex,
glycine decarboxylase complex; HET: FAD; 3.15A {Pisum
sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Length = 470
Score = 27.5 bits (62), Expect = 8.0
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 22 DEYDFIIVGAGVGGCVVAHRLS 43
DE D +I+G G GG V A + +
Sbjct: 5 DENDVVIIGGGPGGYVAAIKAA 26
>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A
{Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
PDB: 1lpf_A*
Length = 476
Score = 27.5 bits (62), Expect = 8.5
Identities = 13/33 (39%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Query: 22 DEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIE 54
++D I++GAG GG V A + +++ K LIE
Sbjct: 2 QKFDVIVIGAGPGGYVAAIKSAQL-GLKTALIE 33
>1jx4_A DNA polymerase IV (family Y); protein-DNA complex, Y-family,
transferase-D complex; HET: DNA MSE ADI; 1.70A
{Sulfolobus solfataricus} SCOP: d.240.1.1 e.8.1.7 PDB:
1jxl_A* 1n48_A* 1n56_A* 1ryr_A* 1rys_A* 1s0m_A* 1s0n_A*
1s0o_A* 1s10_A* 1s97_A* 1s9f_A* 2ia6_A* 2ibk_A* 2r8g_A*
2r8h_A* 2r8i_A* 2rdj_A* 3fds_A* 3m9m_B* 3m9n_B* ...
Length = 352
Score = 27.5 bits (62), Expect = 8.6
Identities = 8/24 (33%), Positives = 12/24 (50%), Gaps = 2/24 (8%)
Query: 325 LSGVGPR--EHLTELGIPVVQDLR 346
+ G+G E L +LGI + D
Sbjct: 183 VPGIGNITAEKLKKLGINKLVDTL 206
>3gqc_A DNA repair protein REV1; protein-DNA complex, DNA damage, DNA
repair, DNA synthesis, binding, magnesium,
metal-binding; HET: DNA DOC DCP; 2.50A {Homo sapiens}
Length = 504
Score = 27.5 bits (61), Expect = 9.0
Identities = 10/24 (41%), Positives = 11/24 (45%), Gaps = 2/24 (8%)
Query: 325 LSGVGPR--EHLTELGIPVVQDLR 346
L GVG L LGI DL+
Sbjct: 320 LPGVGHSMESKLASLGIKTCGDLQ 343
>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide
dehydrogenase, pyruvate dehydrogenase, alpha keto acid
dehydrogenase; HET: FAD; 2.40A {Mycobacterium
tuberculosis} PDB: 3ii4_A*
Length = 464
Score = 27.5 bits (62), Expect = 9.1
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 23 EYDFIIVGAGVGGCVVAHR 41
YD +++GAG GG V A R
Sbjct: 3 HYDVVVLGAGPGGYVAAIR 21
>1kf6_A Fumarate reductase flavoprotein; respiration, fumarate reductace,
succinate dehydrogenase, CO quinol, quinone,
oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A
{Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB:
1kfy_A* 1l0v_A* 2b76_A* 3cir_A* 3p4p_A* 3p4q_A* 3p4r_A*
3p4s_A*
Length = 602
Score = 27.3 bits (61), Expect = 9.2
Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Query: 23 EYDFIIVGAGVGGCVVAHRLSEV-PSWKVLLI 53
+ D IVGAG G A ++ P+ K+ LI
Sbjct: 5 QADLAIVGAGGAGLRAAIAAAQANPNAKIALI 36
>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD;
2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5
d.87.1.1
Length = 458
Score = 27.1 bits (61), Expect = 9.9
Identities = 10/32 (31%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Query: 23 EYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIE 54
+ +I+G G GG V A R ++ +L+E
Sbjct: 5 QTTLLIIGGGPGGYVAAIRAGQL-GIPTVLVE 35
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.138 0.411
Gapped
Lambda K H
0.267 0.0470 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,975,966
Number of extensions: 373100
Number of successful extensions: 1226
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1149
Number of HSP's successfully gapped: 177
Length of query: 385
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 290
Effective length of database: 4,049,298
Effective search space: 1174296420
Effective search space used: 1174296420
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.8 bits)