Query psy10418
Match_columns 389
No_of_seqs 129 out of 159
Neff 4.6
Searched_HMMs 46136
Date Fri Aug 16 17:23:18 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10418.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10418hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF09744 Jnk-SapK_ap_N: JNK_SA 100.0 4.5E-34 9.7E-39 257.7 13.8 139 14-152 1-158 (158)
2 KOG2077|consensus 99.7 1.1E-17 2.5E-22 173.7 7.8 104 10-113 1-113 (832)
3 PF11461 RILP: Rab interacting 99.3 1.5E-12 3.2E-17 100.8 3.2 31 191-221 1-31 (60)
4 TIGR02169 SMC_prok_A chromosom 96.3 2.8 6E-05 47.4 32.6 62 282-343 397-458 (1164)
5 PF09744 Jnk-SapK_ap_N: JNK_SA 96.3 0.087 1.9E-06 48.4 12.4 24 249-272 135-158 (158)
6 KOG2077|consensus 95.9 0.044 9.6E-07 59.1 10.0 107 95-227 324-433 (832)
7 PF10174 Cast: RIM-binding pro 95.9 1.3 2.8E-05 49.9 21.4 223 87-320 323-563 (775)
8 PF00038 Filament: Intermediat 95.7 2.4 5.2E-05 41.5 27.0 70 264-343 210-279 (312)
9 PF00038 Filament: Intermediat 95.6 0.5 1.1E-05 46.2 15.3 35 206-240 3-38 (312)
10 COG1196 Smc Chromosome segrega 95.5 3.1 6.7E-05 48.6 23.6 70 7-78 139-208 (1163)
11 KOG0250|consensus 95.1 8.9 0.00019 44.6 31.9 112 207-339 351-463 (1074)
12 TIGR02168 SMC_prok_B chromosom 94.8 8.8 0.00019 43.3 31.2 26 318-343 446-471 (1179)
13 KOG0161|consensus 94.6 16 0.00035 45.3 27.5 150 190-342 1515-1669(1930)
14 KOG4673|consensus 94.1 12 0.00027 41.9 24.7 98 259-356 519-635 (961)
15 PF15070 GOLGA2L5: Putative go 94.1 12 0.00025 41.5 31.2 167 200-380 160-345 (617)
16 COG1579 Zn-ribbon protein, pos 94.1 3.9 8.5E-05 40.1 16.6 143 193-355 31-179 (239)
17 KOG0161|consensus 93.8 23 0.0005 44.0 27.9 82 261-342 1060-1141(1930)
18 PF10174 Cast: RIM-binding pro 93.8 15 0.00032 41.7 22.5 238 85-354 230-469 (775)
19 PF04849 HAP1_N: HAP1 N-termin 93.6 9.5 0.00021 38.8 20.5 80 224-308 171-251 (306)
20 PF07888 CALCOCO1: Calcium bin 93.0 16 0.00035 39.9 33.6 86 262-347 370-460 (546)
21 PF07888 CALCOCO1: Calcium bin 92.7 18 0.00039 39.5 29.9 68 284-354 371-438 (546)
22 TIGR03752 conj_TIGR03752 integ 92.1 2.3 4.9E-05 45.4 12.6 90 259-348 48-139 (472)
23 PRK11637 AmiB activator; Provi 91.8 18 0.00039 37.5 20.1 17 139-155 113-129 (428)
24 TIGR02168 SMC_prok_B chromosom 91.5 28 0.00062 39.3 31.8 56 286-341 875-930 (1179)
25 PHA02562 46 endonuclease subun 91.1 23 0.00049 37.3 23.2 28 193-220 255-282 (562)
26 TIGR00606 rad50 rad50. This fa 91.0 40 0.00088 40.1 29.4 11 345-355 1113-1123(1311)
27 KOG1029|consensus 90.7 34 0.00074 39.1 20.0 78 262-342 474-551 (1118)
28 PF09755 DUF2046: Uncharacteri 90.7 9 0.00019 39.0 14.6 136 204-343 31-188 (310)
29 KOG0933|consensus 89.2 52 0.0011 38.6 24.0 198 87-343 288-503 (1174)
30 KOG1853|consensus 89.1 23 0.00049 35.6 15.6 39 195-233 61-104 (333)
31 PF09789 DUF2353: Uncharacteri 88.9 30 0.00064 35.5 20.7 137 204-343 76-220 (319)
32 COG1196 Smc Chromosome segrega 88.9 55 0.0012 38.5 26.6 26 194-219 745-770 (1163)
33 PRK09039 hypothetical protein; 88.8 20 0.00044 36.5 15.7 29 271-299 124-152 (343)
34 PF15294 Leu_zip: Leucine zipp 88.6 8 0.00017 38.8 12.4 54 286-339 127-180 (278)
35 PF11559 ADIP: Afadin- and alp 88.6 14 0.0003 32.9 12.8 93 251-343 30-125 (151)
36 PF04111 APG6: Autophagy prote 88.4 5.2 0.00011 40.3 11.2 123 203-340 12-134 (314)
37 TIGR02449 conserved hypothetic 88.4 4.9 0.00011 32.1 8.7 59 285-343 1-59 (65)
38 PF15070 GOLGA2L5: Putative go 88.2 47 0.001 36.8 26.7 53 291-343 153-205 (617)
39 KOG0996|consensus 87.4 71 0.0015 38.1 21.4 134 194-343 487-623 (1293)
40 PRK04863 mukB cell division pr 87.0 43 0.00093 40.8 19.1 34 192-228 309-342 (1486)
41 KOG4674|consensus 85.7 1E+02 0.0023 38.3 23.2 128 81-222 804-934 (1822)
42 PF10186 Atg14: UV radiation r 85.0 37 0.0008 32.5 15.7 89 255-343 55-143 (302)
43 KOG0995|consensus 83.9 23 0.00049 38.9 13.6 69 275-343 292-363 (581)
44 PF14662 CCDC155: Coiled-coil 83.2 44 0.00096 32.0 20.3 109 200-316 81-190 (193)
45 TIGR00606 rad50 rad50. This fa 82.7 1.1E+02 0.0025 36.4 30.0 97 194-296 759-862 (1311)
46 KOG0995|consensus 82.4 84 0.0018 34.7 23.6 31 189-219 328-358 (581)
47 PF09726 Macoilin: Transmembra 82.2 93 0.002 35.1 24.7 222 64-343 419-653 (697)
48 TIGR03007 pepcterm_ChnLen poly 82.1 70 0.0015 33.5 22.0 67 137-220 162-231 (498)
49 PRK02224 chromosome segregatio 81.8 96 0.0021 34.9 30.9 86 194-287 413-499 (880)
50 PF14197 Cep57_CLD_2: Centroso 81.8 19 0.00041 28.9 9.3 57 285-348 6-63 (69)
51 KOG0612|consensus 81.2 1.3E+02 0.0028 36.1 26.7 27 188-217 572-598 (1317)
52 KOG0999|consensus 79.6 57 0.0012 36.1 14.6 112 197-319 40-156 (772)
53 KOG0288|consensus 79.0 65 0.0014 34.3 14.4 126 199-346 5-131 (459)
54 KOG0250|consensus 78.7 1.3E+02 0.0027 35.7 17.8 25 193-217 248-272 (1074)
55 PF12325 TMF_TATA_bd: TATA ele 78.6 45 0.00098 29.4 11.5 86 255-351 15-100 (120)
56 PF03962 Mnd1: Mnd1 family; I 78.6 57 0.0012 30.7 12.9 29 23-58 15-43 (188)
57 PF11559 ADIP: Afadin- and alp 78.1 49 0.0011 29.3 15.7 84 257-343 67-150 (151)
58 PF12329 TMF_DNA_bd: TATA elem 77.8 23 0.00049 28.6 8.7 68 269-343 4-71 (74)
59 PF06818 Fez1: Fez1; InterPro 77.6 44 0.00096 32.2 11.9 44 281-324 63-106 (202)
60 PF08614 ATG16: Autophagy prot 77.5 29 0.00062 32.3 10.5 21 96-116 27-47 (194)
61 KOG4657|consensus 76.1 85 0.0018 31.0 14.6 149 14-191 16-189 (246)
62 TIGR02231 conserved hypothetic 75.6 30 0.00065 36.8 11.4 43 301-343 127-169 (525)
63 PF08614 ATG16: Autophagy prot 74.4 29 0.00062 32.3 9.7 106 187-320 74-180 (194)
64 PF09789 DUF2353: Uncharacteri 73.4 1.1E+02 0.0025 31.3 14.3 96 192-296 15-112 (319)
65 KOG1962|consensus 73.3 46 0.001 32.4 10.9 80 224-315 131-210 (216)
66 TIGR03185 DNA_S_dndD DNA sulfu 72.3 92 0.002 34.2 14.4 128 196-342 156-285 (650)
67 PF15619 Lebercilin: Ciliary p 71.0 97 0.0021 29.4 14.8 132 199-345 11-151 (194)
68 KOG3809|consensus 69.3 84 0.0018 33.9 12.5 90 253-342 476-569 (583)
69 PF06005 DUF904: Protein of un 68.6 61 0.0013 26.2 9.5 63 256-318 4-66 (72)
70 smart00787 Spc7 Spc7 kinetocho 68.2 1.4E+02 0.0031 30.3 15.8 49 91-139 68-116 (312)
71 TIGR02680 conserved hypothetic 66.7 3E+02 0.0065 33.4 18.7 32 192-223 222-253 (1353)
72 PRK10884 SH3 domain-containing 66.6 1.1E+02 0.0023 29.4 11.8 77 255-334 92-168 (206)
73 KOG0963|consensus 65.2 2.3E+02 0.0051 31.7 25.4 70 273-343 281-354 (629)
74 KOG1029|consensus 65.0 2.7E+02 0.0059 32.3 26.9 116 198-329 484-601 (1118)
75 PF05483 SCP-1: Synaptonemal c 64.8 2.6E+02 0.0055 31.9 30.8 135 63-239 405-553 (786)
76 PF15290 Syntaphilin: Golgi-lo 64.0 46 0.001 33.7 9.0 70 265-350 70-146 (305)
77 PF05130 FlgN: FlgN protein; 62.4 67 0.0015 26.8 8.7 72 253-324 12-86 (143)
78 PF09755 DUF2046: Uncharacteri 62.2 1.9E+02 0.0042 29.7 32.2 182 94-328 107-298 (310)
79 PRK09039 hypothetical protein; 62.2 1.9E+02 0.0041 29.6 18.0 78 262-342 122-199 (343)
80 KOG4643|consensus 61.9 3.4E+02 0.0073 32.4 26.8 33 89-121 311-343 (1195)
81 PF07111 HCR: Alpha helical co 61.6 2.9E+02 0.0063 31.5 30.5 47 284-330 373-419 (739)
82 PF12325 TMF_TATA_bd: TATA ele 61.5 1.2E+02 0.0025 26.9 10.8 48 263-310 40-87 (120)
83 PHA02562 46 endonuclease subun 61.4 2.2E+02 0.0048 30.0 32.1 191 88-331 215-405 (562)
84 PRK10884 SH3 domain-containing 61.2 1E+02 0.0022 29.6 10.6 71 270-343 93-163 (206)
85 COG2433 Uncharacterized conser 61.1 1.4E+02 0.0029 33.5 12.6 91 254-348 420-510 (652)
86 PF01166 TSC22: TSC-22/dip/bun 60.7 28 0.0006 27.5 5.4 32 89-120 17-48 (59)
87 PF14915 CCDC144C: CCDC144C pr 60.3 2.1E+02 0.0045 29.4 20.9 110 210-343 129-238 (305)
88 PF10168 Nup88: Nuclear pore c 59.8 96 0.0021 35.0 11.6 105 202-314 560-669 (717)
89 PF00769 ERM: Ezrin/radixin/mo 59.2 1.8E+02 0.0039 28.4 14.5 23 198-220 3-25 (246)
90 PF05812 Herpes_BLRF2: Herpesv 58.9 20 0.00043 31.8 5.0 45 95-139 5-50 (118)
91 KOG0977|consensus 58.8 2.9E+02 0.0062 30.5 21.4 118 194-339 100-217 (546)
92 PF09304 Cortex-I_coil: Cortex 58.8 1.2E+02 0.0026 26.6 9.6 63 277-339 16-78 (107)
93 PF11932 DUF3450: Protein of u 57.4 1.7E+02 0.0036 28.2 11.5 68 262-329 41-108 (251)
94 PF07200 Mod_r: Modifier of ru 57.1 1.4E+02 0.003 26.3 12.1 45 190-234 4-48 (150)
95 PF13851 GAS: Growth-arrest sp 57.0 1.8E+02 0.0039 27.6 13.5 71 260-330 59-132 (201)
96 PF04156 IncA: IncA protein; 56.5 1.6E+02 0.0034 26.8 15.4 18 203-220 84-101 (191)
97 KOG4674|consensus 55.9 5.2E+02 0.011 32.7 29.5 250 81-343 1094-1373(1822)
98 PF05667 DUF812: Protein of un 55.8 3.3E+02 0.0071 30.3 25.9 101 195-308 442-543 (594)
99 PRK02224 chromosome segregatio 55.5 3.5E+02 0.0075 30.5 32.4 34 194-227 476-509 (880)
100 PF06637 PV-1: PV-1 protein (P 54.9 2.9E+02 0.0063 29.4 14.0 15 258-272 280-294 (442)
101 PF12709 Kinetocho_Slk19: Cent 54.9 90 0.002 26.4 7.9 55 64-118 16-74 (87)
102 PF14817 HAUS5: HAUS augmin-li 54.8 1.4E+02 0.003 33.5 11.6 80 259-338 82-161 (632)
103 PF09726 Macoilin: Transmembra 54.7 3.6E+02 0.0079 30.5 22.5 178 63-291 460-650 (697)
104 COG1579 Zn-ribbon protein, pos 54.5 1.8E+02 0.0039 28.7 11.2 75 265-339 33-109 (239)
105 PF10146 zf-C4H2: Zinc finger- 54.1 1.8E+02 0.0039 28.4 11.1 99 35-152 1-105 (230)
106 PRK11546 zraP zinc resistance 53.8 72 0.0016 29.2 7.8 69 286-354 49-118 (143)
107 PF11180 DUF2968: Protein of u 53.5 1.5E+02 0.0032 28.5 10.1 142 188-343 24-185 (192)
108 PF11932 DUF3450: Protein of u 53.0 1.1E+02 0.0024 29.4 9.6 37 306-342 57-93 (251)
109 KOG0977|consensus 52.9 3.6E+02 0.0077 29.8 16.1 143 202-347 37-190 (546)
110 PRK00888 ftsB cell division pr 52.2 87 0.0019 26.8 7.7 74 279-372 29-103 (105)
111 PF09738 DUF2051: Double stran 52.2 2.7E+02 0.0059 28.3 15.7 111 88-221 114-247 (302)
112 PRK13729 conjugal transfer pil 51.3 1.4E+02 0.003 32.4 10.6 53 286-342 68-120 (475)
113 PF03962 Mnd1: Mnd1 family; I 50.7 69 0.0015 30.1 7.5 57 286-343 71-127 (188)
114 COG3074 Uncharacterized protei 50.3 1.2E+02 0.0027 24.9 7.7 23 91-113 37-59 (79)
115 PF10473 CENP-F_leu_zip: Leuci 49.8 2E+02 0.0044 26.1 16.0 102 191-313 8-116 (140)
116 PF05622 HOOK: HOOK protein; 49.3 5.6 0.00012 44.1 0.0 27 90-116 190-216 (713)
117 KOG0982|consensus 49.0 3.8E+02 0.0082 29.0 14.4 135 198-342 213-358 (502)
118 PRK15048 methyl-accepting chem 48.7 3.5E+02 0.0077 28.6 16.5 59 316-376 473-532 (553)
119 PRK03918 chromosome segregatio 48.2 4.4E+02 0.0096 29.6 31.6 23 132-154 448-470 (880)
120 PF06005 DUF904: Protein of un 47.3 1.5E+02 0.0033 23.9 10.0 64 286-349 6-70 (72)
121 PF07111 HCR: Alpha helical co 46.5 5E+02 0.011 29.7 26.0 65 253-334 303-367 (739)
122 PF10186 Atg14: UV radiation r 46.4 2.7E+02 0.0058 26.5 17.6 18 194-211 28-45 (302)
123 PRK11281 hypothetical protein; 46.2 2.2E+02 0.0049 33.9 12.1 137 206-342 59-215 (1113)
124 PLN02939 transferase, transfer 44.8 6E+02 0.013 30.1 16.7 29 190-218 153-181 (977)
125 KOG3759|consensus 44.7 1.6E+02 0.0035 32.1 9.7 75 256-350 177-251 (621)
126 PF15066 CAGE1: Cancer-associa 44.4 2.9E+02 0.0063 30.1 11.5 18 136-153 317-334 (527)
127 PHA03155 hypothetical protein; 44.1 58 0.0012 28.9 5.4 41 96-139 11-51 (115)
128 PF05529 Bap31: B-cell recepto 43.9 1.1E+02 0.0023 28.2 7.6 38 261-298 152-189 (192)
129 COG3206 GumC Uncharacterized p 43.3 4.1E+02 0.0089 27.8 13.3 125 255-379 284-430 (458)
130 PF15254 CCDC14: Coiled-coil d 43.0 5.9E+02 0.013 29.6 23.0 77 260-339 466-542 (861)
131 PF05911 DUF869: Plant protein 42.9 5.8E+02 0.013 29.4 14.9 66 271-343 618-683 (769)
132 PF07407 Seadorna_VP6: Seadorn 42.6 1E+02 0.0022 32.1 7.7 64 276-339 23-89 (420)
133 PRK10803 tol-pal system protei 42.6 1.1E+02 0.0024 30.0 7.9 60 271-330 41-100 (263)
134 PF12329 TMF_DNA_bd: TATA elem 42.5 1.8E+02 0.0039 23.4 9.2 6 286-291 14-19 (74)
135 PF04576 Zein-binding: Zein-bi 42.1 1.9E+02 0.0041 24.9 8.0 78 198-279 8-93 (94)
136 PF07926 TPR_MLP1_2: TPR/MLP1/ 41.9 2.4E+02 0.0052 24.7 9.3 76 41-116 51-128 (132)
137 PF10805 DUF2730: Protein of u 41.6 2.1E+02 0.0046 24.3 8.5 43 275-317 47-91 (106)
138 PF06632 XRCC4: DNA double-str 41.5 2.3E+02 0.0049 29.3 10.1 62 286-347 139-208 (342)
139 PHA03162 hypothetical protein; 41.0 72 0.0016 29.0 5.6 27 96-122 16-42 (135)
140 PF10498 IFT57: Intra-flagella 40.6 4.4E+02 0.0096 27.4 14.4 150 82-280 198-352 (359)
141 PF10224 DUF2205: Predicted co 40.5 1.2E+02 0.0025 25.2 6.4 47 188-234 3-51 (80)
142 PF14915 CCDC144C: CCDC144C pr 40.5 4.3E+02 0.0093 27.2 18.1 107 98-240 135-241 (305)
143 PRK00888 ftsB cell division pr 40.2 65 0.0014 27.6 5.1 32 309-340 31-62 (105)
144 PF07106 TBPIP: Tat binding pr 40.2 1.9E+02 0.0041 26.1 8.4 55 258-312 81-137 (169)
145 TIGR01005 eps_transp_fam exopo 39.8 5.7E+02 0.012 28.5 22.0 76 256-331 288-364 (754)
146 cd08318 Death_NMPP84 Death dom 39.6 40 0.00088 27.6 3.6 30 5-34 1-30 (86)
147 PF05622 HOOK: HOOK protein; 39.3 9.9 0.00021 42.1 0.0 50 190-239 176-226 (713)
148 PF01486 K-box: K-box region; 38.9 1.9E+02 0.0042 23.9 7.7 30 88-117 70-99 (100)
149 PRK09841 cryptic autophosphory 38.4 6.1E+02 0.013 28.4 16.2 31 266-296 317-351 (726)
150 PRK04778 septation ring format 38.3 5.6E+02 0.012 27.9 26.1 59 94-157 311-369 (569)
151 TIGR01843 type_I_hlyD type I s 38.1 4.2E+02 0.0092 26.4 17.6 22 198-219 135-156 (423)
152 smart00338 BRLZ basic region l 37.9 1.1E+02 0.0023 23.4 5.6 36 81-116 28-63 (65)
153 cd00068 GGL G protein gamma su 37.7 62 0.0013 24.7 4.2 49 330-381 3-55 (57)
154 KOG4687|consensus 37.6 4.8E+02 0.01 26.9 13.3 36 183-220 210-245 (389)
155 PF14662 CCDC155: Coiled-coil 37.5 3.8E+02 0.0083 25.8 13.7 100 224-342 19-118 (193)
156 smart00224 GGL G protein gamma 37.3 61 0.0013 25.3 4.1 47 330-381 3-55 (63)
157 PF15066 CAGE1: Cancer-associa 36.5 4.7E+02 0.01 28.6 11.6 87 256-342 317-406 (527)
158 PF05557 MAD: Mitotic checkpoi 36.3 1.7E+02 0.0038 32.6 9.0 21 255-275 565-585 (722)
159 PF10473 CENP-F_leu_zip: Leuci 35.7 3.4E+02 0.0074 24.7 11.0 60 284-343 45-104 (140)
160 PF10805 DUF2730: Protein of u 35.5 1.5E+02 0.0032 25.3 6.6 66 256-321 35-102 (106)
161 PF05557 MAD: Mitotic checkpoi 35.5 2.1E+02 0.0046 31.9 9.5 55 289-343 564-630 (722)
162 KOG0976|consensus 35.3 8.1E+02 0.018 28.9 21.4 21 194-214 184-204 (1265)
163 KOG0964|consensus 34.5 8.9E+02 0.019 29.1 25.5 86 258-343 399-484 (1200)
164 PF15619 Lebercilin: Ciliary p 34.0 4.2E+02 0.009 25.1 16.8 140 194-344 27-189 (194)
165 KOG4807|consensus 33.6 5.4E+02 0.012 27.7 11.4 89 64-152 429-535 (593)
166 PF10226 DUF2216: Uncharacteri 33.2 2.1E+02 0.0045 27.6 7.7 51 66-116 19-78 (195)
167 PF05700 BCAS2: Breast carcino 32.9 3.5E+02 0.0076 25.8 9.4 89 28-120 125-216 (221)
168 PF10168 Nup88: Nuclear pore c 32.5 5.1E+02 0.011 29.4 11.9 90 261-350 570-664 (717)
169 PF13870 DUF4201: Domain of un 32.3 3.9E+02 0.0084 24.3 17.3 122 222-346 44-172 (177)
170 PF10267 Tmemb_cc2: Predicted 32.2 4E+02 0.0087 28.2 10.3 53 292-354 245-298 (395)
171 PF00170 bZIP_1: bZIP transcri 32.0 1.7E+02 0.0037 22.3 5.9 35 81-115 28-62 (64)
172 smart00338 BRLZ basic region l 31.9 1.5E+02 0.0032 22.7 5.5 34 285-318 27-60 (65)
173 PF03670 UPF0184: Uncharacteri 31.8 2.5E+02 0.0054 23.6 7.0 44 285-328 27-70 (83)
174 PF07200 Mod_r: Modifier of ru 31.7 3.6E+02 0.0077 23.7 9.8 67 276-342 26-92 (150)
175 PF03980 Nnf1: Nnf1 ; InterPr 31.6 3.1E+02 0.0067 23.0 9.9 85 14-118 12-105 (109)
176 PF08317 Spc7: Spc7 kinetochor 31.2 5.6E+02 0.012 25.8 14.4 34 91-124 73-106 (325)
177 PF08172 CASP_C: CASP C termin 31.0 5.3E+02 0.011 25.4 12.2 53 261-313 80-136 (248)
178 PF09787 Golgin_A5: Golgin sub 30.9 7E+02 0.015 26.8 12.7 54 290-343 326-379 (511)
179 KOG2129|consensus 30.8 7.3E+02 0.016 27.0 12.9 65 95-159 203-276 (552)
180 PRK08032 fliD flagellar cappin 30.8 5E+02 0.011 27.6 11.0 99 15-116 360-461 (462)
181 COG2433 Uncharacterized conser 30.8 6.6E+02 0.014 28.4 11.9 67 217-302 426-492 (652)
182 PF15397 DUF4618: Domain of un 30.1 5.7E+02 0.012 25.6 15.1 148 76-293 64-223 (258)
183 KOG1853|consensus 29.8 6.1E+02 0.013 25.8 11.8 37 81-117 47-83 (333)
184 PF11365 DUF3166: Protein of u 29.5 3.7E+02 0.0079 23.1 8.9 35 203-237 4-39 (96)
185 KOG0612|consensus 29.3 1.1E+03 0.025 28.8 23.7 42 299-342 668-709 (1317)
186 cd04787 HTH_HMRTR_unk Helix-Tu 29.1 2.7E+02 0.0059 24.2 7.4 32 190-221 58-100 (133)
187 PF06818 Fez1: Fez1; InterPro 29.1 5.4E+02 0.012 24.9 14.0 92 204-310 14-106 (202)
188 PF14282 FlxA: FlxA-like prote 28.8 3E+02 0.0064 23.5 7.3 56 285-343 20-75 (106)
189 PF00170 bZIP_1: bZIP transcri 28.7 2E+02 0.0042 22.0 5.7 34 285-318 27-60 (64)
190 COG5185 HEC1 Protein involved 28.5 8.4E+02 0.018 27.0 15.7 84 256-343 316-399 (622)
191 PF06304 DUF1048: Protein of u 28.4 1.2E+02 0.0026 26.2 4.8 40 20-59 26-65 (103)
192 COG1340 Uncharacterized archae 28.2 6.6E+02 0.014 25.7 22.2 171 145-347 39-229 (294)
193 KOG4196|consensus 27.7 2.5E+02 0.0054 25.6 6.8 52 315-366 77-129 (135)
194 TIGR02894 DNA_bind_RsfA transc 27.7 3.3E+02 0.0072 25.5 7.9 13 41-53 82-94 (161)
195 COG3096 MukB Uncharacterized p 27.4 1.1E+03 0.023 27.9 16.2 100 255-354 990-1108(1480)
196 PF06120 Phage_HK97_TLTM: Tail 27.4 5.3E+02 0.011 26.4 9.9 42 293-334 129-170 (301)
197 PF06216 RTBV_P46: Rice tungro 27.3 1.7E+02 0.0036 29.7 6.2 50 269-318 63-112 (389)
198 PF06008 Laminin_I: Laminin Do 26.9 5.8E+02 0.013 24.6 15.5 93 259-353 90-188 (264)
199 PF15005 IZUMO: Izumo sperm-eg 26.9 1.2E+02 0.0025 28.3 4.8 51 3-55 56-106 (160)
200 PRK10929 putative mechanosensi 26.0 1.1E+03 0.025 28.3 13.6 130 206-350 44-204 (1109)
201 PF09304 Cortex-I_coil: Cortex 25.8 4.6E+02 0.01 23.1 13.4 90 201-339 10-99 (107)
202 PRK04778 septation ring format 25.7 8.9E+02 0.019 26.4 33.0 26 129-154 191-216 (569)
203 KOG2751|consensus 25.7 7.5E+02 0.016 26.7 10.9 20 202-221 145-164 (447)
204 PF13870 DUF4201: Domain of un 25.6 5.1E+02 0.011 23.5 12.5 81 273-353 52-132 (177)
205 PF13801 Metal_resist: Heavy-m 25.2 3.6E+02 0.0077 21.6 8.4 67 263-332 41-107 (125)
206 TIGR01000 bacteriocin_acc bact 25.0 8.1E+02 0.017 25.6 16.3 36 311-346 275-311 (457)
207 PF04111 APG6: Autophagy prote 24.6 7.4E+02 0.016 25.0 12.5 80 275-354 48-134 (314)
208 PF12130 DUF3585: Protein of u 24.4 4.9E+02 0.011 23.4 8.2 77 192-275 46-125 (142)
209 PF04102 SlyX: SlyX; InterPro 24.4 3E+02 0.0065 21.7 6.1 42 270-311 11-52 (69)
210 PF01576 Myosin_tail_1: Myosin 24.4 25 0.00054 40.2 0.0 119 194-318 462-587 (859)
211 KOG0946|consensus 24.3 1.2E+03 0.026 27.4 22.9 234 83-343 682-935 (970)
212 TIGR03752 conj_TIGR03752 integ 24.3 5.6E+02 0.012 27.9 9.8 70 274-343 70-140 (472)
213 PF09429 Wbp11: WW domain bind 24.1 2.2E+02 0.0047 23.2 5.4 25 275-299 28-52 (78)
214 PF06156 DUF972: Protein of un 24.0 2.8E+02 0.006 24.0 6.3 48 270-317 8-55 (107)
215 TIGR02231 conserved hypothetic 24.0 8.7E+02 0.019 25.9 11.4 36 304-339 137-172 (525)
216 PF15290 Syntaphilin: Golgi-lo 24.0 2.4E+02 0.0051 28.9 6.6 46 62-107 88-138 (305)
217 PF13815 Dzip-like_N: Iguana/D 23.9 4.7E+02 0.01 22.5 8.2 34 308-341 83-116 (118)
218 PF05667 DUF812: Protein of un 23.3 1.1E+03 0.023 26.4 17.3 28 192-219 327-354 (594)
219 PF04156 IncA: IncA protein; 23.3 5.6E+02 0.012 23.2 13.5 21 218-238 86-106 (191)
220 COG1729 Uncharacterized protei 23.2 1.3E+02 0.0028 30.1 4.7 58 285-343 57-114 (262)
221 PF11598 COMP: Cartilage oligo 22.3 1.6E+02 0.0034 22.0 3.9 24 255-278 14-37 (45)
222 KOG0577|consensus 22.2 1.2E+03 0.027 26.8 20.8 62 267-329 690-752 (948)
223 PF12777 MT: Microtubule-bindi 22.2 5.6E+02 0.012 26.0 9.1 67 270-336 214-280 (344)
224 PHA03162 hypothetical protein; 22.1 1.4E+02 0.0031 27.1 4.3 38 221-258 21-59 (135)
225 PF08172 CASP_C: CASP C termin 22.0 4.7E+02 0.01 25.8 8.3 49 286-355 81-129 (248)
226 PF08317 Spc7: Spc7 kinetochor 21.7 8.3E+02 0.018 24.6 22.9 24 310-333 242-265 (325)
227 PF04977 DivIC: Septum formati 21.7 1.7E+02 0.0037 22.5 4.2 29 91-119 22-50 (80)
228 PF12795 MscS_porin: Mechanose 21.5 7.1E+02 0.015 23.7 14.7 138 195-342 26-173 (240)
229 PRK10722 hypothetical protein; 21.4 5.1E+02 0.011 25.9 8.3 38 302-339 162-203 (247)
230 PRK04863 mukB cell division pr 21.0 1.7E+03 0.036 27.8 26.5 86 255-340 567-666 (1486)
231 PF04859 DUF641: Plant protein 21.0 3.4E+02 0.0073 24.5 6.4 47 301-354 83-129 (131)
232 COG3879 Uncharacterized protei 20.9 5.1E+02 0.011 25.9 8.1 10 334-343 97-106 (247)
233 KOG4005|consensus 20.7 8.8E+02 0.019 24.5 11.1 105 268-379 71-202 (292)
234 KOG3335|consensus 20.6 2.2E+02 0.0049 27.1 5.4 38 334-373 121-159 (181)
235 PF14932 HAUS-augmin3: HAUS au 20.4 7.9E+02 0.017 24.0 9.5 53 284-336 68-120 (256)
236 PF10392 COG5: Golgi transport 20.3 3.9E+02 0.0085 23.3 6.7 56 254-310 71-126 (132)
237 PF09798 LCD1: DNA damage chec 20.2 2.9E+02 0.0062 31.2 7.0 51 68-118 2-58 (654)
No 1
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=100.00 E-value=4.5e-34 Score=257.71 Aligned_cols=139 Identities=40% Similarity=0.662 Sum_probs=121.5
Q ss_pred HHHHHHHHHHHHHHHHHhhCcchhhchhhHHHHHHHhHHHHhccccccchhHHHhhhhhhHHH----HhHH-----HHHH
Q psy10418 14 VFDIASEIGKEFEKIIDQYGPDAVTSIMPKVIVALEHLECLASKNERENTKLQELGDHISKLE----HEKL-----EREV 84 (389)
Q Consensus 14 VydiA~~IG~EfErli~~~G~d~V~~LmpkVV~vLElLEs~~~~~~~e~~~~e~L~~~~~qle----~Ek~-----~~El 84 (389)
||+||++||+|||+|||.||+|+|+|||||||+|||+||+++++|+.++.+++.|+.++++|. ++|. +.++
T Consensus 1 Vy~lA~~Ig~EfE~lId~~G~e~v~~LmP~VV~vLE~Le~~~~~n~~~~~e~~~L~~d~e~L~~q~~~ek~~r~~~e~~l 80 (158)
T PF09744_consen 1 VYDLASSIGKEFERLIDRYGEEAVKGLMPKVVRVLELLESLASRNQEHEVELELLREDNEQLETQYEREKELRKQAEEEL 80 (158)
T ss_pred ChHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999999999999999999999999999999999999999998764 4443 6789
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCC----------ccCCCCchHHHHHHHHHHHHHHHHHHHH
Q psy10418 85 EEIEESWKEETQQLVEMVNRLQEENKKLSKRLEHEGSSPM----------KSQQLSPEIDISVLQKLRGQVDSLRDQM 152 (389)
Q Consensus 85 e~~Ed~~r~E~~eL~~~V~~LqeeN~~L~~~Ls~~~~~~~----------~~~~~~~e~er~vm~kLKe~VdkQRDei 152 (389)
.+++|.|++++++|.++|++|+++|++|...+...+.... .....+.+++++||+++++.|++|||+|
T Consensus 81 ~~~Ed~~~~e~k~L~~~v~~Le~e~r~L~~~~~~~~~q~~rlee~e~~l~~e~~~l~er~~e~l~~~~e~ver~k~~~ 158 (158)
T PF09744_consen 81 LELEDQWRQERKDLQSQVEQLEEENRQLELKLKNLSDQSSRLEEREAELKKEYNRLHERERELLRKLKEHVERQKDEI 158 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999966654333211 1223455789999999999999999986
No 2
>KOG2077|consensus
Probab=99.71 E-value=1.1e-17 Score=173.68 Aligned_cols=104 Identities=26% Similarity=0.402 Sum_probs=95.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhCcchhhchhhHHHHHHHhHHHHhccccccchhHHHhhhhhhH----HHHhHH-----
Q psy10418 10 TVIDVFDIASEIGKEFEKIIDQYGPDAVTSIMPKVIVALEHLECLASKNERENTKLQELGDHISK----LEHEKL----- 80 (389)
Q Consensus 10 tveDVydiA~~IG~EfErli~~~G~d~V~~LmpkVV~vLElLEs~~~~~~~e~~~~e~L~~~~~q----le~Ek~----- 80 (389)
|++.|..||++||+|||+||.-||+|+|+.|||+||+|||.|+++++.|++|.++++.|+.+|+| ||+||.
T Consensus 1 MSerVs~lAgsIYREfErlIh~~~Ee~VKeLMPLVVNVLEnLD~v~~EnqEhevELElLrEDNEQl~tqYErEkalR~q~ 80 (832)
T KOG2077|consen 1 MSERVSGLAGSIYREFERLIHCYDEEVVKELMPLVVNVLENLDSVLSENQEHEVELELLREDNEQLITQYEREKALRTQL 80 (832)
T ss_pred CchhhhhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999885 688887
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy10418 81 EREVEEIEESWKEETQQLVEMVNRLQEENKKLS 113 (389)
Q Consensus 81 ~~Ele~~Ed~~r~E~~eL~~~V~~LqeeN~~L~ 113 (389)
++.+..++|++.+.+++|..++..++...+.|-
T Consensus 81 eqKfie~eD~Le~~~kel~~k~e~~e~~~r~Le 113 (832)
T KOG2077|consen 81 EQKFIEGEDQLESTAKELIRKEEPIELGIRPLE 113 (832)
T ss_pred HhhhcchHHHHHhhHHHHHhhhcchhheeeeec
Confidence 556677999999999999999999887766663
No 3
>PF11461 RILP: Rab interacting lysosomal protein; InterPro: IPR021563 RILP contains a domain which contains two coiled-coil regions and is found mainly in the cytosol. RILP is recruited onto late endosomal and lysosomal membranes by Rab7 and acts as a downstream effector of Rab7. This recruitment process is important for phagosome maturation and fusion with late endosomes and lysosomes. ; PDB: 1YHN_B.
Probab=99.29 E-value=1.5e-12 Score=100.82 Aligned_cols=31 Identities=48% Similarity=0.662 Sum_probs=28.6
Q ss_pred cHHHHHHHHHhhHHHHHHHHHHHHHHHhhhh
Q psy10418 191 TTAELKEILHDRNTLKTRLNELEEERQCFKM 221 (389)
Q Consensus 191 Tl~ELreVL~ERNELKa~vf~LqEEl~~~~~ 221 (389)
|++|||+||||||+||++||+|||||+||++
T Consensus 1 Tl~ELr~VL~ERNeLK~~v~~leEEL~~yk~ 31 (60)
T PF11461_consen 1 TLQELREVLQERNELKARVFLLEEELAYYKS 31 (60)
T ss_dssp --TTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 8999999999999999999999999999997
No 4
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=96.29 E-value=2.8 Score=47.44 Aligned_cols=62 Identities=18% Similarity=0.313 Sum_probs=29.1
Q ss_pred hhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy10418 282 RNSDVDNLKRQIDRLTSTVRELRRKQRLSQVQVRGLIDERADFLAALQDHQREVAALKQQLG 343 (389)
Q Consensus 282 k~~evEaLq~Q~~RL~~~n~eLRrk~~~~q~Q~r~l~eekadl~a~lq~~~~ei~~L~~~lg 343 (389)
...++..+..++.++..-...+.......+.++..+-.+-.++...+.....++..+..++.
T Consensus 397 l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~l~~l~~~~~ 458 (1164)
T TIGR02169 397 LKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLE 458 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444444444444444444444444555555555555555555554
No 5
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=96.27 E-value=0.087 Score=48.36 Aligned_cols=24 Identities=25% Similarity=0.374 Sum_probs=20.3
Q ss_pred CCchhhHHHHHHHHHHHHHhHHHH
Q psy10418 249 LSPEIDISALQKLRGQVDSLRDQM 272 (389)
Q Consensus 249 ~~~~~d~~vm~kLKe~VdkQRdei 272 (389)
++.++++++|+++++.|++|||+|
T Consensus 135 ~l~er~~e~l~~~~e~ver~k~~~ 158 (158)
T PF09744_consen 135 RLHERERELLRKLKEHVERQKDEI 158 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcC
Confidence 455778999999999999999876
No 6
>KOG2077|consensus
Probab=95.94 E-value=0.044 Score=59.12 Aligned_cols=107 Identities=29% Similarity=0.432 Sum_probs=74.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhcCCCCCccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhh---hcccccCCCCCC
Q psy10418 95 TQQLVEMVNRLQEENKKLSKRLEHEGSSPMKSQQLSPEIDISVLQKLRGQVDSLRDQMRLKEKEL---GYRNSDVDNSDI 171 (389)
Q Consensus 95 ~~eL~~~V~~LqeeN~~L~~~Ls~~~~~~~~~~~~~~e~er~vm~kLKe~VdkQRDeiRake~eL---~~k~~dve~l~~ 171 (389)
..+|-.+|..|-.||-=|.+.+-. -.++=.||.++|-+...|||---.++ +.+..+.+.-.+
T Consensus 324 KNDLIakVDeL~~E~~vLrgElea---------------~kqak~Klee~i~elEEElk~~k~ea~~ar~~~~~~e~ddi 388 (832)
T KOG2077|consen 324 KNDLIAKVDELTCEKDVLRGELEA---------------VKQAKLKLEEKIRELEEELKKAKAEAEDARQKAKDDEDDDI 388 (832)
T ss_pred HHHHHHHHHhhccHHHHHhhHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccc
Confidence 456777777777777777665532 23566788899999999987532222 233333322222
Q ss_pred cccccccccCCCCCCCCcccHHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhHHHHH
Q psy10418 172 PDLSNKAVYDLDDPNRPRFTTAELKEILHDRNTLKTRLNELEEERQCFKMVNRLQE 227 (389)
Q Consensus 172 ~~L~~~~~~d~~dpnrPrFTl~ELreVL~ERNELKa~vf~LqEEl~~~~~V~qLqe 227 (389)
| =.-|-|||..|..-||-|||.+|.+++.|||-+..--|+..-++
T Consensus 389 P-----------mAqRkRFTRvEMaRVLMeRNqYKErLMELqEavrWTEMiRAsre 433 (832)
T KOG2077|consen 389 P-----------MAQRKRFTRVEMARVLMERNQYKERLMELQEAVRWTEMIRASRE 433 (832)
T ss_pred c-----------HHHHhhhHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHhhc
Confidence 2 12378999999999999999999999999998876665554443
No 7
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=95.87 E-value=1.3 Score=49.85 Aligned_cols=223 Identities=22% Similarity=0.274 Sum_probs=116.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccC
Q psy10418 87 IEESWKEETQQLVEMVNRLQEENKKLSKRLEHEGSSPMKSQQLSPEIDISVLQKLRGQVDSLRDQMRLKEKELGYRNSDV 166 (389)
Q Consensus 87 ~Ed~~r~E~~eL~~~V~~LqeeN~~L~~~Ls~~~~~~~~~~~~~~e~er~vm~kLKe~VdkQRDeiRake~eL~~k~~dv 166 (389)
-.+.++.........-+.|+.++..|...|.+.+......+.. .+.=-.=+..++--|.+.+|.++.+++.+..--..+
T Consensus 323 hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~-~~~~qeE~~~~~~Ei~~l~d~~d~~e~ki~~Lq~ki 401 (775)
T PF10174_consen 323 HIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQ-IEKLQEEKSRLQGEIEDLRDMLDKKERKINVLQKKI 401 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555666666677777788888877777666542211100 001111122233345555555555555443222222
Q ss_pred CCCCCc---------ccccccccCCCCCCCCcccHHHHHHHHHhhHHHHHHHHHH--------HHHHHhh-hhhHHHHHH
Q psy10418 167 DNSDIP---------DLSNKAVYDLDDPNRPRFTTAELKEILHDRNTLKTRLNEL--------EEERQCF-KMVNRLQEE 228 (389)
Q Consensus 167 e~l~~~---------~L~~~~~~d~~dpnrPrFTl~ELreVL~ERNELKa~vf~L--------qEEl~~~-~~V~qLqee 228 (389)
+++... .+..+... ..|...-.+.+..|.+.+.|+--+-..+..+ .+++..| +-+..|...
T Consensus 402 e~Lee~l~ekd~ql~~~k~Rl~~-~~d~~~~~~~~~~lEea~~eker~~e~l~e~r~~~e~e~~Eele~~~~e~~~lk~~ 480 (775)
T PF10174_consen 402 ENLEEQLREKDRQLDEEKERLSS-QADSSNEDEALETLEEALREKERLQERLEEQRERAEKERQEELETYQKELKELKAK 480 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222110 00000000 1122223356677888888887777776655 4555555 334444555
Q ss_pred HHHHhhhhhhcCCCCCccCCCCchhhHHHHHHHHHHHHHhHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHhhHHHHHHHH
Q psy10418 229 NKKLSKRLEHEGSSPMKSQQLSPEIDISALQKLRGQVDSLRDQMRLKEKELGYRNSDVDNLKRQIDRLTSTVRELRRKQR 308 (389)
Q Consensus 229 Nk~L~~~ls~~~~~~~~~~e~~~~~d~~vm~kLKe~VdkQRdeiRak~~el~~k~~evEaLq~Q~~RL~~~n~eLRrk~~ 308 (389)
+..|.+.++....+- ..-+.=..+|-.--.|++.+|+-..-++..++.+++.|..|+.+ ...+.+++-+..
T Consensus 481 ~~~LQ~eLsEk~~~l--------~~~kee~s~l~s~~~K~~s~i~~l~I~lEk~rek~~kl~~ql~k-~~~~~e~~~r~~ 551 (775)
T PF10174_consen 481 LESLQKELSEKELQL--------EDAKEEASKLASSQEKKDSEIERLEIELEKKREKHEKLEKQLEK-LRANAELRDRIQ 551 (775)
T ss_pred HHHHhhhhHHHHHHH--------HHhhhHHHHHhhccchhhhHHHHHHHHHHHhhhHHHHHHHHHHH-HHhCHhhcchHH
Confidence 555555555443100 00111222334444677788888888888888888888888888 555567777777
Q ss_pred HHHHHHHHHHHH
Q psy10418 309 LSQVQVRGLIDE 320 (389)
Q Consensus 309 ~~q~Q~r~l~ee 320 (389)
.+...+-..-++
T Consensus 552 ~Le~ev~~~~ee 563 (775)
T PF10174_consen 552 QLEQEVTRYREE 563 (775)
T ss_pred HHHHHHHHHHHH
Confidence 777766444443
No 8
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=95.67 E-value=2.4 Score=41.51 Aligned_cols=70 Identities=17% Similarity=0.470 Sum_probs=36.6
Q ss_pred HHHHhHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy10418 264 QVDSLRDQMRLKEKELGYRNSDVDNLKRQIDRLTSTVRELRRKQRLSQVQVRGLIDERADFLAALQDHQREVAALKQQLG 343 (389)
Q Consensus 264 ~VdkQRdeiRak~~el~~k~~evEaLq~Q~~RL~~~n~eLRrk~~~~q~Q~r~l~eekadl~a~lq~~~~ei~~L~~~lg 343 (389)
.+..-+.+++...+.+.....+++.|+.+...|.+...++.+.+. .++.++.+.+...+.+|..++..+.
T Consensus 210 ~~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~~----------~~~~~~~~~i~~le~el~~l~~~~~ 279 (312)
T PF00038_consen 210 ELESAKEELKELRRQIQSLQAELESLRAKNASLERQLRELEQRLD----------EEREEYQAEIAELEEELAELREEMA 279 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHHHH----------HHHHHHHHhhhccchhHHHHHHHHH
Confidence 344445555555555555555555555555555555555444443 3445555555555555555555554
No 9
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=95.60 E-value=0.5 Score=46.21 Aligned_cols=35 Identities=29% Similarity=0.413 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHH-hhhhhHHHHHHHHHHhhhhhhcC
Q psy10418 206 KTRLNELEEERQ-CFKMVNRLQEENKKLSKRLEHEG 240 (389)
Q Consensus 206 Ka~vf~LqEEl~-~~~~V~qLqeeNk~L~~~ls~~~ 240 (389)
|..+..|+.=|+ |.-.|..|..+|+.|...+....
T Consensus 3 K~eL~~LNdRla~YIekVr~LE~~N~~Le~~i~~~~ 38 (312)
T PF00038_consen 3 KEELQSLNDRLASYIEKVRFLEQENKRLESEIEELR 38 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 456677888897 55999999999999999999765
No 10
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=95.51 E-value=3.1 Score=48.55 Aligned_cols=70 Identities=26% Similarity=0.264 Sum_probs=45.1
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHhhCcchhhchhhHHHHHHHhHHHHhccccccchhHHHhhhhhhHHHHh
Q psy10418 7 STLTVIDVFDIASEIGKEFEKIIDQYGPDAVTSIMPKVIVALEHLECLASKNERENTKLQELGDHISKLEHE 78 (389)
Q Consensus 7 ~~ltveDVydiA~~IG~EfErli~~~G~d~V~~LmpkVV~vLElLEs~~~~~~~e~~~~e~L~~~~~qle~E 78 (389)
+-|+=.+|..|+.+=..|.-.||+. .--|..+-.+...+...|+.....-..-..-+.+|...++.|+.+
T Consensus 139 ~iV~QG~V~~i~~~kp~err~iiEE--aaGv~~y~~r~~ea~~~L~~~~~nl~~~~~~~~el~~~l~~L~~q 208 (1163)
T COG1196 139 SIVSQGKVEEIINAKPEERRKLIEE--AAGVSKYKERKEEAERKLERTEENLERLEDLLEELEKQLEKLERQ 208 (1163)
T ss_pred ceeecccHHHHHcCCHHHHHHHHHH--HhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5567789999999999999998872 112666677777777777766544333234445555555555443
No 11
>KOG0250|consensus
Probab=95.09 E-value=8.9 Score=44.60 Aligned_cols=112 Identities=20% Similarity=0.302 Sum_probs=65.0
Q ss_pred HHHHHHHHHH-HhhhhhHHHHHHHHHHhhhhhhcCCCCCccCCCCchhhHHHHHHHHHHHHHhHHHHHHhhhhhhhhhhh
Q psy10418 207 TRLNELEEER-QCFKMVNRLQEENKKLSKRLEHEGSSPMKSQQLSPEIDISALQKLRGQVDSLRDQMRLKEKELGYRNSD 285 (389)
Q Consensus 207 a~vf~LqEEl-~~~~~V~qLqeeNk~L~~~ls~~~~~~~~~~e~~~~~d~~vm~kLKe~VdkQRdeiRak~~el~~k~~e 285 (389)
-.+..++++. .....+.+++.....|.+++.+..+ +++. .+-.++.++.-| +.....+
T Consensus 351 re~~~~~~~~~~~~n~i~~~k~~~d~l~k~I~~~~~--------------~~~~----~~~~~~~e~e~k---~~~L~~e 409 (1074)
T KOG0250|consen 351 REVNDLKEEIREIENSIRKLKKEVDRLEKQIADLEK--------------QTNN----ELGSELEERENK---LEQLKKE 409 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHh----hhhhhHHHHHHH---HHHHHHH
Confidence 3333444444 2344555555566666666665531 1111 223344444333 3344567
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10418 286 VDNLKRQIDRLTSTVRELRRKQRLSQVQVRGLIDERADFLAALQDHQREVAALK 339 (389)
Q Consensus 286 vEaLq~Q~~RL~~~n~eLRrk~~~~q~Q~r~l~eekadl~a~lq~~~~ei~~L~ 339 (389)
||.++.|+.+|..--.++..+....+--.-..-.+..++.-.++..+.+|..|+
T Consensus 410 vek~e~~~~~L~~e~~~~~~~~~~~~ee~~~i~~~i~~l~k~i~~~~~~l~~lk 463 (1074)
T KOG0250|consen 410 VEKLEEQINSLREELNEVKEKAKEEEEEKEHIEGEILQLRKKIENISEELKDLK 463 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788888888887777777777777766655555666666666666666666666
No 12
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=94.84 E-value=8.8 Score=43.27 Aligned_cols=26 Identities=15% Similarity=0.325 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy10418 318 IDERADFLAALQDHQREVAALKQQLG 343 (389)
Q Consensus 318 ~eekadl~a~lq~~~~ei~~L~~~lg 343 (389)
-.+...+...+.+.+.++..++.++.
T Consensus 446 ~~~~~~l~~~~~~~~~~~~~l~~~~~ 471 (1179)
T TIGR02168 446 EEELEELQEELERLEEALEELREELE 471 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444445555
No 13
>KOG0161|consensus
Probab=94.62 E-value=16 Score=45.27 Aligned_cols=150 Identities=20% Similarity=0.263 Sum_probs=93.1
Q ss_pred ccHH-HHHHHHHhhHHHHHHHHHHHHHHHhh-hhhHHHHHHHHHHhhhhhhcCCCCCccCCCCchhhHHHHHHHHHHHHH
Q psy10418 190 FTTA-ELKEILHDRNTLKTRLNELEEERQCF-KMVNRLQEENKKLSKRLEHEGSSPMKSQQLSPEIDISALQKLRGQVDS 267 (389)
Q Consensus 190 FTl~-ELreVL~ERNELKa~vf~LqEEl~~~-~~V~qLqeeNk~L~~~ls~~~~~~~~~~e~~~~~d~~vm~kLKe~Vdk 267 (389)
.+++ .+|.+-.+..+|.+.+-.++.++..- .-+-+++-++..+.....+.-.+ ..+++-..-+..-..+......
T Consensus 1515 ~elek~~r~le~e~~elQ~aLeElE~~le~eE~~~lr~~~~~~~~r~e~er~l~e---k~Ee~E~~rk~~~~~i~~~q~~ 1591 (1930)
T KOG0161|consen 1515 HELEKEKRRLEQEKEELQAALEELEAALEAEEDKKLRLQLELQQLRSEIERRLQE---KDEEIEELRKNLQRQLESLQAE 1591 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHh---hhHHHHHHHHHHHHHHHHHHHh
Confidence 4444 67888889999999999999987532 22223444444444443332200 1111111122333333333333
Q ss_pred hHHHHHHhhhhhhhhhh---hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy10418 268 LRDQMRLKEKELGYRNS---DVDNLKRQIDRLTSTVRELRRKQRLSQVQVRGLIDERADFLAALQDHQREVAALKQQL 342 (389)
Q Consensus 268 QRdeiRak~~el~~k~~---evEaLq~Q~~RL~~~n~eLRrk~~~~q~Q~r~l~eekadl~a~lq~~~~ei~~L~~~l 342 (389)
--.+-|+|.--+..|.. ||.-|..+++=..+.|.|+....+..|.|++.|.-+.-|-.++.++..-......+++
T Consensus 1592 Le~E~r~k~e~~r~KKkle~di~elE~~ld~ank~~~d~~K~lkk~q~~~k~lq~~~e~~~~~~~e~~~q~~~aerr~ 1669 (1930)
T KOG0161|consen 1592 LEAETRSKSEALRSKKKLEGDINELEIQLDHANKANEDAQKQLKKLQAQLKELQRELEDAQRAREELLEQLAEAERRL 1669 (1930)
T ss_pred hhHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33777777777777663 7889999999999999999999999999999888777666665555553333333333
No 14
>KOG4673|consensus
Probab=94.11 E-value=12 Score=41.91 Aligned_cols=98 Identities=18% Similarity=0.234 Sum_probs=71.2
Q ss_pred HHHHHHHHHhHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHhhHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10418 259 QKLRGQVDSLRDQMRLKEKELGYRNSDVDNLKRQIDRLTSTVRELRR--------KQRLSQVQVRGLIDERADFLAALQD 330 (389)
Q Consensus 259 ~kLKe~VdkQRdeiRak~~el~~k~~evEaLq~Q~~RL~~~n~eLRr--------k~~~~q~Q~r~l~eekadl~a~lq~ 330 (389)
+.+.++|.|---++...+.++.....++++|+.|.--+...|-++|- |+.-...+--+|+.+=.||.-.|+.
T Consensus 519 k~~~E~I~k~~ae~~rq~~~~~~sr~~~~~le~~~~a~qat~d~a~~Dlqk~nrlkQdear~~~~~lvqqv~dLR~~L~~ 598 (961)
T KOG4673|consen 519 KLLQETIEKHQAELTRQKDYYSNSRALAAALEAQALAEQATNDEARSDLQKENRLKQDEARERESMLVQQVEDLRQTLSK 598 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhhhhHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456666666666666667777777888888888777777766554 3445566777888888888888886
Q ss_pred HHH-----------HHHHHHHHhhHHHHhhhhhhccc
Q psy10418 331 HQR-----------EVAALKQQLGLAEKENEDLYNSQ 356 (389)
Q Consensus 331 ~~~-----------ei~~L~~~lg~~~k~~~dl~~~~ 356 (389)
+++ ||..|.+||--|+.-++.+++..
T Consensus 599 ~Eq~aarrEd~~R~Ei~~LqrRlqaaE~R~eel~q~v 635 (961)
T KOG4673|consen 599 KEQQAARREDMFRGEIEDLQRRLQAAERRCEELIQQV 635 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 654 68888888888888888887753
No 15
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=94.07 E-value=12 Score=41.45 Aligned_cols=167 Identities=22% Similarity=0.312 Sum_probs=94.0
Q ss_pred HhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhhcCCCCCccCCCCchhhHHHHHHHHHHHHHhHHHHHHhhhhh
Q psy10418 200 HDRNTLKTRLNELEEERQCFKMVNRLQEENKKLSKRLEHEGSSPMKSQQLSPEIDISALQKLRGQVDSLRDQMRLKEKEL 279 (389)
Q Consensus 200 ~ERNELKa~vf~LqEEl~~~~~V~qLqeeNk~L~~~ls~~~~~~~~~~e~~~~~d~~vm~kLKe~VdkQRdeiRak~~el 279 (389)
.---+||.++-.|++= ...|.++|-.|-..|.+.. .+...=..-|..|++.++..+..|..|+.++
T Consensus 160 sQN~eLK~QL~Elq~~------Fv~ltne~~elt~~lq~Eq--------~~~keL~~kl~~l~~~l~~~~e~le~K~qE~ 225 (617)
T PF15070_consen 160 SQNRELKEQLAELQDA------FVKLTNENMELTSALQSEQ--------HVKKELQKKLGELQEKLHNLKEKLELKSQEA 225 (617)
T ss_pred HhHHHHHHHHHHHHHH------HHHHHHhhhHhhHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 3334888888888873 3344566655555554432 0000011234455666666677777777666
Q ss_pred hhhhhhHHHHHHHHHHHH------HhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhhh
Q psy10418 280 GYRNSDVDNLKRQIDRLT------STVRELRRKQRLSQVQV-RGLIDERADFLAALQDHQREVAALKQQLGLAEKENEDL 352 (389)
Q Consensus 280 ~~k~~evEaLq~Q~~RL~------~~n~eLRrk~~~~q~Q~-r~l~eekadl~a~lq~~~~ei~~L~~~lg~~~k~~~dl 352 (389)
......-+.+-.++.... ..-.|--||+-+.|+|. -.|-.+-+.--+++.-.++++...+..|..+...|+.|
T Consensus 226 ~~Lq~q~dq~~~~Lqqy~a~~q~l~~e~e~L~~q~l~Qtql~d~lq~eE~q~~~~~E~~~~ELq~~qe~Lea~~qqNqqL 305 (617)
T PF15070_consen 226 QSLQEQRDQYLGHLQQYVAAYQQLASEKEELHKQLLQQTQLMDRLQHEESQGKVQLEMAHQELQEAQEHLEALSQQNQQL 305 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 666555444444444332 33345567777778774 55555555555566666677777777777777777776
Q ss_pred hccc-c-ccC---------CCCCCCCCCCCCCCCC-CCCc
Q psy10418 353 YNSQ-E-TTS---------EEERPVQGPLPYEPDD-APWK 380 (389)
Q Consensus 353 ~~~~-~-~~~---------~~~~pvqgp~p~ep~~-~pwk 380 (389)
...- . ..+ +.+--++-|+|.=|.| ..|.
T Consensus 306 ~~qls~~~~~~eg~~~~~~~~~ee~~~~~~~ipEd~es~E 345 (617)
T PF15070_consen 306 QAQLSLMALPGEGDGLESESEEEEAPQPMPSIPEDLESRE 345 (617)
T ss_pred HHHHHhhcCCCCCcccccccccccccCcCcccccccccHH
Confidence 6432 1 111 1122355678888877 3453
No 16
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=94.06 E-value=3.9 Score=40.11 Aligned_cols=143 Identities=19% Similarity=0.290 Sum_probs=103.9
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHhh-hhhHHHHHHHHHHhhhhhhcCCCCCccCCCCchhhHHHHHHHHHHHHHhHHH
Q psy10418 193 AELKEILHDRNTLKTRLNELEEERQCF-KMVNRLQEENKKLSKRLEHEGSSPMKSQQLSPEIDISALQKLRGQVDSLRDQ 271 (389)
Q Consensus 193 ~ELreVL~ERNELKa~vf~LqEEl~~~-~~V~qLqeeNk~L~~~ls~~~~~~~~~~e~~~~~d~~vm~kLKe~VdkQRde 271 (389)
..|+.+-.+.+.++..+-.++.++.-| .+|++++.+.+.......... . +|+.+-| -++
T Consensus 31 ~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e---------------~---kl~~v~~--~~e 90 (239)
T COG1579 31 KALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAE---------------E---KLSAVKD--ERE 90 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------H---HHhcccc--HHH
Confidence 378889999999999999999999766 788999888888877766543 1 1222222 356
Q ss_pred HHHhhhhhhhhhhhHHHHHHHHHHHHHhhHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hHHH
Q psy10418 272 MRLKEKELGYRNSDVDNLKRQIDRLTSTVRELRRKQRLSQ----VQVRGLIDERADFLAALQDHQREVAALKQQL-GLAE 346 (389)
Q Consensus 272 iRak~~el~~k~~evEaLq~Q~~RL~~~n~eLRrk~~~~q----~Q~r~l~eekadl~a~lq~~~~ei~~L~~~l-g~~~ 346 (389)
++|..++++.-.....+|..++.+|+.--+.|.-....++ .+-+.+.+.++.+.+.+....++...+..+- -|..
T Consensus 91 ~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~~e~~~~~e~e~~~i~e~~~~~~~~~~~L~~ 170 (239)
T COG1579 91 LRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKNLAEAEARLEEEVAEIREEGQELSSKREELKE 170 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7788888888888888888888887777777776665554 4445667777788888888877755555444 4888
Q ss_pred Hhhhhhhcc
Q psy10418 347 KENEDLYNS 355 (389)
Q Consensus 347 k~~~dl~~~ 355 (389)
+.+.++...
T Consensus 171 ~l~~ell~~ 179 (239)
T COG1579 171 KLDPELLSE 179 (239)
T ss_pred hcCHHHHHH
Confidence 887777654
No 17
>KOG0161|consensus
Probab=93.80 E-value=23 Score=43.96 Aligned_cols=82 Identities=23% Similarity=0.351 Sum_probs=67.4
Q ss_pred HHHHHHHhHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10418 261 LRGQVDSLRDQMRLKEKELGYRNSDVDNLKRQIDRLTSTVRELRRKQRLSQVQVRGLIDERADFLAALQDHQREVAALKQ 340 (389)
Q Consensus 261 LKe~VdkQRdeiRak~~el~~k~~evEaLq~Q~~RL~~~n~eLRrk~~~~q~Q~r~l~eekadl~a~lq~~~~ei~~L~~ 340 (389)
++..+...-..++-+.-+++..+..++.++..+.-|.+...+|-.+++-++-.+..-.-.++.++.+..+...++.+|+.
T Consensus 1060 ~~~~~~el~~~l~kke~El~~l~~k~e~e~~~~~~l~k~i~eL~~~i~el~e~le~er~~r~K~ek~r~dL~~ele~l~~ 1139 (1930)
T KOG0161|consen 1060 LKKQKEELDNQLKKKESELSQLQSKLEDEQAEVAQLQKQIKELEARIKELEEELEAERASRAKAERQRRDLSEELEELKE 1139 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555566667888888888888888888888888888888888888888888888888888888888888888888887
Q ss_pred Hh
Q psy10418 341 QL 342 (389)
Q Consensus 341 ~l 342 (389)
+|
T Consensus 1140 ~L 1141 (1930)
T KOG0161|consen 1140 EL 1141 (1930)
T ss_pred HH
Confidence 77
No 18
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=93.76 E-value=15 Score=41.72 Aligned_cols=238 Identities=21% Similarity=0.267 Sum_probs=154.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccc
Q psy10418 85 EEIEESWKEETQQLVEMVNRLQEENKKLSKRLEHEGSSPMKSQQLSPEIDISVLQKLRGQVDSLRDQMRLKEKELGYRNS 164 (389)
Q Consensus 85 e~~Ed~~r~E~~eL~~~V~~LqeeN~~L~~~Ls~~~~~~~~~~~~~~e~er~vm~kLKe~VdkQRDeiRake~eL~~k~~ 164 (389)
..+.+.-...+..|-.++..|+.+..+|.+.+.....+.+.. ....+..+.....+|..+|..+-+|--++.||.....
T Consensus 230 q~~ie~Kd~ki~~lEr~l~~le~Ei~~L~~~~~~~~~~r~~~-~k~le~~~s~~~~mK~k~d~~~~eL~rk~~E~~~~qt 308 (775)
T PF10174_consen 230 QTVIEEKDTKIASLERMLRDLEDEIYRLRSRGELSEADRDRL-DKQLEVYKSHSLAMKSKMDRLKLELSRKKSELEALQT 308 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchHHH-HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555677777888888999999988775444331110 0123446777888999999999999999988753332
Q ss_pred cCCCCCCcccccccccCCCCCCCCcccHHHHHHHHHhhHHHHHHHHHHHHHHHhh-hhhHHHHHHHHHHhhhhhhcCCCC
Q psy10418 165 DVDNSDIPDLSNKAVYDLDDPNRPRFTTAELKEILHDRNTLKTRLNELEEERQCF-KMVNRLQEENKKLSKRLEHEGSSP 243 (389)
Q Consensus 165 dve~l~~~~L~~~~~~d~~dpnrPrFTl~ELreVL~ERNELKa~vf~LqEEl~~~-~~V~qLqeeNk~L~~~ls~~~~~~ 243 (389)
+|.+.-+.=++++..+-+|++.|.-. +.-..||.++..|...+..++..-
T Consensus 309 -----------------------------~l~~~~~~~~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l 359 (775)
T PF10174_consen 309 -----------------------------RLETLEEQDSDMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQL 359 (775)
T ss_pred -----------------------------HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 23334444566788888999999655 566778889999999888776211
Q ss_pred CccCCCCchhhHHHHHHHHHHHHHhHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy10418 244 MKSQQLSPEIDISALQKLRGQVDSLRDQMRLKEKELGYRNSDVDNLKRQIDRLTSTVRELRRKQRLSQVQVRGLIDERAD 323 (389)
Q Consensus 244 ~~~~e~~~~~d~~vm~kLKe~VdkQRdeiRak~~el~~k~~evEaLq~Q~~RL~~~n~eLRrk~~~~q~Q~r~l~eekad 323 (389)
.+.+ .....--.=+..++.-|.+-+|.++.+++++......||+|..++..=-+...+++.|+.. ++=.-+-=.-.+.
T Consensus 360 ~kk~-~~~~~~qeE~~~~~~Ei~~l~d~~d~~e~ki~~Lq~kie~Lee~l~ekd~ql~~~k~Rl~~-~~d~~~~~~~~~~ 437 (775)
T PF10174_consen 360 EKKQ-AQIEKLQEEKSRLQGEIEDLRDMLDKKERKINVLQKKIENLEEQLREKDRQLDEEKERLSS-QADSSNEDEALET 437 (775)
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cccccchHHHHHH
Confidence 0000 0001111234455666888999999999999999999999999886555555566666665 4333332333457
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHh-hhhhhc
Q psy10418 324 FLAALQDHQREVAALKQQLGLAEKE-NEDLYN 354 (389)
Q Consensus 324 l~a~lq~~~~ei~~L~~~lg~~~k~-~~dl~~ 354 (389)
++-.+.+.++-+..|...-.-++++ .+++..
T Consensus 438 lEea~~eker~~e~l~e~r~~~e~e~~Eele~ 469 (775)
T PF10174_consen 438 LEEALREKERLQERLEEQRERAEKERQEELET 469 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7778888888777776432344433 344433
No 19
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=93.55 E-value=9.5 Score=38.75 Aligned_cols=80 Identities=18% Similarity=0.234 Sum_probs=46.3
Q ss_pred HHHHHHHHHhhhhhhcCCCCCccCCC-CchhhHHHHHHHHHHHHHhHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHhhHH
Q psy10418 224 RLQEENKKLSKRLEHEGSSPMKSQQL-SPEIDISALQKLRGQVDSLRDQMRLKEKELGYRNSDVDNLKRQIDRLTSTVRE 302 (389)
Q Consensus 224 qLqeeNk~L~~~ls~~~~~~~~~~e~-~~~~d~~vm~kLKe~VdkQRdeiRak~~el~~k~~evEaLq~Q~~RL~~~n~e 302 (389)
.|.+||..|....++-. +... .-+.+..+|.--=.-.+-=...|.....+|..|+.|....|++|.+|..-..+
T Consensus 171 ~LEeEN~~LR~Ea~~L~-----~et~~~EekEqqLv~dcv~QL~~An~qia~LseELa~k~Ee~~rQQEEIt~Llsqivd 245 (306)
T PF04849_consen 171 SLEEENEQLRSEASQLK-----TETDTYEEKEQQLVLDCVKQLSEANQQIASLSEELARKTEENRRQQEEITSLLSQIVD 245 (306)
T ss_pred HHHHHHHHHHHHHHHhh-----HHHhhccHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666665555432 0001 11234455443222223335567777888888888888888888888877777
Q ss_pred HHHHHH
Q psy10418 303 LRRKQR 308 (389)
Q Consensus 303 LRrk~~ 308 (389)
|-+|.+
T Consensus 246 lQ~r~k 251 (306)
T PF04849_consen 246 LQQRCK 251 (306)
T ss_pred HHHHHH
Confidence 655543
No 20
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=93.04 E-value=16 Score=39.88 Aligned_cols=86 Identities=19% Similarity=0.314 Sum_probs=67.5
Q ss_pred HHHHHHhHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHhhH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10418 262 RGQVDSLRDQMRLKEKELGYRNSDVDNLKRQIDRLTSTVR----ELRRKQRLSQVQVRGLIDERADFLAALQDHQREVAA 337 (389)
Q Consensus 262 Ke~VdkQRdeiRak~~el~~k~~evEaLq~Q~~RL~~~n~----eLRrk~~~~q~Q~r~l~eekadl~a~lq~~~~ei~~ 337 (389)
|+-|-+...++.-+..-+...-.+-..|+-|+-+..--|. |.||.+.=+++.+|.+-.||..|.+--|+.-+.|..
T Consensus 370 k~~ie~L~~el~~~e~~lqEer~E~qkL~~ql~ke~D~n~vqlsE~~rel~Elks~lrv~qkEKEql~~EkQeL~~yi~~ 449 (546)
T PF07888_consen 370 KDEIEKLSRELQMLEEHLQEERMERQKLEKQLGKEKDCNRVQLSENRRELQELKSSLRVAQKEKEQLQEEKQELLEYIER 449 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333344444444566666677788988888887775 999999999999999999999999999999999999
Q ss_pred HHHHhh-HHHH
Q psy10418 338 LKQQLG-LAEK 347 (389)
Q Consensus 338 L~~~lg-~~~k 347 (389)
|+.+|| +|..
T Consensus 450 Le~r~~~~~~~ 460 (546)
T PF07888_consen 450 LEQRLDKVADE 460 (546)
T ss_pred HHHHHHHhhhh
Confidence 999999 5443
No 21
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=92.70 E-value=18 Score=39.53 Aligned_cols=68 Identities=26% Similarity=0.414 Sum_probs=44.4
Q ss_pred hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhhhhc
Q psy10418 284 SDVDNLKRQIDRLTSTVRELRRKQRLSQVQVRGLIDERADFLAALQDHQREVAALKQQLGLAEKENEDLYN 354 (389)
Q Consensus 284 ~evEaLq~Q~~RL~~~n~eLRrk~~~~q~Q~r~l~eekadl~a~lq~~~~ei~~L~~~lg~~~k~~~dl~~ 354 (389)
..|+.|+..++++.+...|=|.---.++.|+.. ++.-=..+|.+..++|+.|+.-|-++.++.+.+..
T Consensus 371 ~~ie~L~~el~~~e~~lqEer~E~qkL~~ql~k---e~D~n~vqlsE~~rel~Elks~lrv~qkEKEql~~ 438 (546)
T PF07888_consen 371 DEIEKLSRELQMLEEHLQEERMERQKLEKQLGK---EKDCNRVQLSENRRELQELKSSLRVAQKEKEQLQE 438 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457788888888777776666555566666643 22222457778888888888777766666554443
No 22
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=92.09 E-value=2.3 Score=45.38 Aligned_cols=90 Identities=14% Similarity=0.212 Sum_probs=67.7
Q ss_pred HHHHHHHHHhHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Q psy10418 259 QKLRGQVDSLRDQMRLKEKELGYRNSDVDNLKRQIDRLTSTVRELRRKQRLSQVQVRGLID-ERADFLAALQDHQREVAA 337 (389)
Q Consensus 259 ~kLKe~VdkQRdeiRak~~el~~k~~evEaLq~Q~~RL~~~n~eLRrk~~~~q~Q~r~l~e-ekadl~a~lq~~~~ei~~ 337 (389)
+.|----|-=+|.||-..-++.....++..|..|.++|.+-|..||.|...+-.|+.+.++ ++.++..+.+....++..
T Consensus 48 kalGiegDTP~DTlrTlva~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~av~~~~~~~~~~~~ql~~~~~~ 127 (472)
T TIGR03752 48 KALGIEGDTPADTLRTLVAEVKELRKRLAKLISENEALKAENERLQKREQSIDQQIQQAVQSETQELTKEIEQLKSERQQ 127 (472)
T ss_pred HhcCCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 3333344555777777777777888889999999999999999999999999999999985 466777666666666666
Q ss_pred HHHHhh-HHHHh
Q psy10418 338 LKQQLG-LAEKE 348 (389)
Q Consensus 338 L~~~lg-~~~k~ 348 (389)
++..|. |..++
T Consensus 128 ~~~~l~~l~~~l 139 (472)
T TIGR03752 128 LQGLIDQLQRRL 139 (472)
T ss_pred HHHHHHHHHHHH
Confidence 666665 43333
No 23
>PRK11637 AmiB activator; Provisional
Probab=91.81 E-value=18 Score=37.53 Aligned_cols=17 Identities=18% Similarity=0.155 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy10418 139 QKLRGQVDSLRDQMRLK 155 (389)
Q Consensus 139 ~kLKe~VdkQRDeiRak 155 (389)
..++..++.+++.+...
T Consensus 113 ~~~q~~l~~~~~~l~~r 129 (428)
T PRK11637 113 AKLEQQQAAQERLLAAQ 129 (428)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444444443
No 24
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=91.52 E-value=28 Score=39.29 Aligned_cols=56 Identities=18% Similarity=0.281 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10418 286 VDNLKRQIDRLTSTVRELRRKQRLSQVQVRGLIDERADFLAALQDHQREVAALKQQ 341 (389)
Q Consensus 286 vEaLq~Q~~RL~~~n~eLRrk~~~~q~Q~r~l~eekadl~a~lq~~~~ei~~L~~~ 341 (389)
+..++.++..+..-..+++.+...+..+++.+-.+...+...+...+.++..++.+
T Consensus 875 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~ 930 (1179)
T TIGR02168 875 LEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELR 930 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444444444444443333333333333333333333333
No 25
>PHA02562 46 endonuclease subunit; Provisional
Probab=91.08 E-value=23 Score=37.35 Aligned_cols=28 Identities=11% Similarity=0.357 Sum_probs=22.7
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHhhh
Q psy10418 193 AELKEILHDRNTLKTRLNELEEERQCFK 220 (389)
Q Consensus 193 ~ELreVL~ERNELKa~vf~LqEEl~~~~ 220 (389)
..|.++-.+.+.++.++-.++.++.+|+
T Consensus 255 ~~L~~l~~~~~~~~~~l~~~~~~~~~~~ 282 (562)
T PHA02562 255 AALNKLNTAAAKIKSKIEQFQKVIKMYE 282 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4577777888888888888888888886
No 26
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=91.01 E-value=40 Score=40.10 Aligned_cols=11 Identities=36% Similarity=0.196 Sum_probs=6.6
Q ss_pred HHHhhhhhhcc
Q psy10418 345 AEKENEDLYNS 355 (389)
Q Consensus 345 ~~k~~~dl~~~ 355 (389)
.+-...||..+
T Consensus 1113 ~~~~~~d~~~~ 1123 (1311)
T TIGR00606 1113 TELVNKDLDIY 1123 (1311)
T ss_pred HHHHHHHHHHH
Confidence 33347777776
No 27
>KOG1029|consensus
Probab=90.65 E-value=34 Score=39.15 Aligned_cols=78 Identities=19% Similarity=0.288 Sum_probs=48.1
Q ss_pred HHHHHHhHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10418 262 RGQVDSLRDQMRLKEKELGYRNSDVDNLKRQIDRLTSTVRELRRKQRLSQVQVRGLIDERADFLAALQDHQREVAALKQQ 341 (389)
Q Consensus 262 Ke~VdkQRdeiRak~~el~~k~~evEaLq~Q~~RL~~~n~eLRrk~~~~q~Q~r~l~eekadl~a~lq~~~~ei~~L~~~ 341 (389)
-+.+++|||-.++-..+| ...|--+|+-+.+|+---++|-|+++.+|.=...--.++..|.|....++--+.+++..
T Consensus 474 ie~~~~q~e~~isei~ql---qarikE~q~kl~~l~~Ekq~l~~qlkq~q~a~~~~~~~~s~L~aa~~~ke~irq~ikdq 550 (1118)
T KOG1029|consen 474 IEEVTKQRELMISEIDQL---QARIKELQEKLQKLAPEKQELNHQLKQKQSAHKETTQRKSELEAARRKKELIRQAIKDQ 550 (1118)
T ss_pred HHHhhhHHHHHHHHHHHH---HHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhccCcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 345577777666544444 44455566667777777788888888887655544455556666555555545555544
Q ss_pred h
Q psy10418 342 L 342 (389)
Q Consensus 342 l 342 (389)
|
T Consensus 551 l 551 (1118)
T KOG1029|consen 551 L 551 (1118)
T ss_pred H
Confidence 4
No 28
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=90.65 E-value=9 Score=39.00 Aligned_cols=136 Identities=19% Similarity=0.295 Sum_probs=81.0
Q ss_pred HHHHHHHHHHHHHHhh-hhhHHHHHHHHHHhhhhhhcCCCCCccCCCCchhhHHHHHHHHHHHHHhHHHH----------
Q psy10418 204 TLKTRLNELEEERQCF-KMVNRLQEENKKLSKRLEHEGSSPMKSQQLSPEIDISALQKLRGQVDSLRDQM---------- 272 (389)
Q Consensus 204 ELKa~vf~LqEEl~~~-~~V~qLqeeNk~L~~~ls~~~~~~~~~~e~~~~~d~~vm~kLKe~VdkQRdei---------- 272 (389)
.|...--.|.-|+.+| -.+..|+++|+.|....-..+..--+--+.++. .+|++|.. +.+..+.|
T Consensus 31 sL~qen~~Lk~El~~ek~~~~~L~~e~~~lr~~sv~~~~~aEqEEE~isN---~LlKkl~~-l~keKe~L~~~~e~EEE~ 106 (310)
T PF09755_consen 31 SLQQENRVLKRELETEKARCKHLQEENRALREASVRIQAKAEQEEEFISN---TLLKKLQQ-LKKEKETLALKYEQEEEF 106 (310)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 3444444555566655 356777777777766544322000000012222 56666654 33333333
Q ss_pred -----HHhhhhhhhhhhhHHHHHH-----HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Q psy10418 273 -----RLKEKELGYRNSDVDNLKR-----QIDRLTSTVRELRRKQRLSQVQVRGLIDERADFLAALQDHQRE-VAALKQQ 341 (389)
Q Consensus 273 -----Rak~~el~~k~~evEaLq~-----Q~~RL~~~n~eLRrk~~~~q~Q~r~l~eekadl~a~lq~~~~e-i~~L~~~ 341 (389)
-.|-.+|..-..++|+.-+ .+.+|++.-..|+......+..+-.|..+|.|++-.|..-|.. +..|.++
T Consensus 107 ltn~L~rkl~qLr~EK~~lE~~Le~EqE~~V~kL~k~i~~Le~e~~~~q~~le~Lr~EKVdlEn~LE~EQE~lvN~L~Kq 186 (310)
T PF09755_consen 107 LTNDLSRKLNQLRQEKVELENQLEQEQEYLVNKLQKKIERLEKEKSAKQEELERLRREKVDLENTLEQEQEALVNRLWKQ 186 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 2222333333334444322 2788889888999888899999999999999999999765555 7778888
Q ss_pred hh
Q psy10418 342 LG 343 (389)
Q Consensus 342 lg 343 (389)
..
T Consensus 187 m~ 188 (310)
T PF09755_consen 187 MD 188 (310)
T ss_pred HH
Confidence 86
No 29
>KOG0933|consensus
Probab=89.20 E-value=52 Score=38.61 Aligned_cols=198 Identities=18% Similarity=0.266 Sum_probs=106.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccC
Q psy10418 87 IEESWKEETQQLVEMVNRLQEENKKLSKRLEHEGSSPMKSQQLSPEIDISVLQKLRGQVDSLRDQMRLKEKELGYRNSDV 166 (389)
Q Consensus 87 ~Ed~~r~E~~eL~~~V~~LqeeN~~L~~~Ls~~~~~~~~~~~~~~e~er~vm~kLKe~VdkQRDeiRake~eL~~k~~dv 166 (389)
.+.+.-++.+.|-.++..++.++-+..+.+.-...+ ...+..=+..+...+..+|.-+++|+.+....-.+.
T Consensus 288 rd~em~~~~~~L~~~~~~~~~~~tr~~t~l~~~~~t--------l~~e~~k~e~i~~~i~e~~~~l~~k~~~~~~~~~~~ 359 (1174)
T KOG0933|consen 288 RDAEMGGEVKALEDKLDSLQNEITREETSLNLKKET--------LNGEEEKLEEIRKNIEEDRKKLKEKEKAMAKVEEGY 359 (1174)
T ss_pred HHHHhchhhhhHHHHHHHHHHHHHHHHHHHHHHHHH--------HhhhHHHHHHHHHhHHHHHHHHHHHHHHHhhhhhhH
Confidence 344566677888888888888888877777644332 233555566666777777777777776654322221
Q ss_pred CCCCCcccccccccCCCCCCCCcccHHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhh----hhhhcCCC
Q psy10418 167 DNSDIPDLSNKAVYDLDDPNRPRFTTAELKEILHDRNTLKTRLNELEEERQCFKMVNRLQEENKKLSK----RLEHEGSS 242 (389)
Q Consensus 167 e~l~~~~L~~~~~~d~~dpnrPrFTl~ELreVL~ERNELKa~vf~LqEEl~~~~~V~qLqeeNk~L~~----~ls~~~~~ 242 (389)
+.++.+ ++..+-+-+.-..+.. -+|+..+
T Consensus 360 ~~~ke~----------------------------------------------~~~~s~~~e~~e~~~eslt~G~Ss~~~- 392 (1174)
T KOG0933|consen 360 EKLKEA----------------------------------------------FQEDSKLLEKAEELVESLTAGLSSNED- 392 (1174)
T ss_pred HHHHHH----------------------------------------------HHHHHHHHHHHHHHHHHHhcccccCcc-
Confidence 111111 0000111111112222 2222210
Q ss_pred CCccCCCCch-----------hhHHHHHHHHHHHHHhHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHhhHHHHHHHHHH-
Q psy10418 243 PMKSQQLSPE-----------IDISALQKLRGQVDSLRDQMRLKEKELGYRNSDVDNLKRQIDRLTSTVRELRRKQRLS- 310 (389)
Q Consensus 243 ~~~~~e~~~~-----------~d~~vm~kLKe~VdkQRdeiRak~~el~~k~~evEaLq~Q~~RL~~~n~eLRrk~~~~- 310 (389)
.+.+-+ .-..-+...+-....-|.+|+-+.-++.+.+.+-.....-++-+.+-..+|+++...+
T Consensus 393 ----~e~~l~~ql~~aK~~~~~~~t~~k~a~~k~e~~~~elk~~e~e~~t~~~~~~~~~~~ld~~q~eve~l~~~l~~l~ 468 (1174)
T KOG0933|consen 393 ----EEKTLEDQLRDAKITLSEASTEIKQAKLKLEHLRKELKLREGELATASAEYVKDIEELDALQNEVEKLKKRLQSLG 468 (1174)
T ss_pred ----chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 001110 0112233444445555667777776766666654444444444444444444443332
Q ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy10418 311 --QVQVRGLIDERADFLAALQDHQREVAALKQQLG 343 (389)
Q Consensus 311 --q~Q~r~l~eekadl~a~lq~~~~ei~~L~~~lg 343 (389)
-.|...|-+.++.+-........+..+|..+|+
T Consensus 469 ~~~~~~e~l~q~~~~l~~~~~~lk~~~~~l~a~~~ 503 (1174)
T KOG0933|consen 469 YKIGQEEALKQRRAKLHEDIGRLKDELDRLLARLA 503 (1174)
T ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 356778888888888888888888888887775
No 30
>KOG1853|consensus
Probab=89.13 E-value=23 Score=35.57 Aligned_cols=39 Identities=13% Similarity=0.258 Sum_probs=24.6
Q ss_pred HHHHHHhhHHHHHHHHHHHHHH-----HhhhhhHHHHHHHHHHh
Q psy10418 195 LKEILHDRNTLKTRLNELEEER-----QCFKMVNRLQEENKKLS 233 (389)
Q Consensus 195 LreVL~ERNELKa~vf~LqEEl-----~~~~~V~qLqeeNk~L~ 233 (389)
+|++..+-|-|++.+--+.|-+ +.|+++++|.-+|..++
T Consensus 61 nrdl~t~nqrl~~E~e~~Kek~e~q~~q~y~q~s~Leddlsqt~ 104 (333)
T KOG1853|consen 61 NRDLETRNQRLTTEQERNKEKQEDQRVQFYQQESQLEDDLSQTH 104 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555556666665555554 37888888877765554
No 31
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=88.94 E-value=30 Score=35.47 Aligned_cols=137 Identities=23% Similarity=0.259 Sum_probs=97.9
Q ss_pred HHHHHHHHHHHHHHhh-hhhHHHHHHHHHHhhhhhhcC--CCCCccCCCCchh--hHHHHHHHHHHHHHhHHHHHHhhhh
Q psy10418 204 TLKTRLNELEEERQCF-KMVNRLQEENKKLSKRLEHEG--SSPMKSQQLSPEI--DISALQKLRGQVDSLRDQMRLKEKE 278 (389)
Q Consensus 204 ELKa~vf~LqEEl~~~-~~V~qLqeeNk~L~~~ls~~~--~~~~~~~e~~~~~--d~~vm~kLKe~VdkQRdeiRak~~e 278 (389)
+.+.+..-|+.|+..+ +.+.-++.+++.|...+..-. ..+.-+..+..++ =..=|.+++..+..---++++.--|
T Consensus 76 ~sre~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r~~~~~~~~~~~~~ere~lV~qLEk~~~q~~qLe~d~qs~lDE 155 (319)
T PF09789_consen 76 ESREQNKKLKEEVEELRQKLNEAQGDIKLLREKLARQRVGDEGIGARHFPHEREDLVEQLEKLREQIEQLERDLQSLLDE 155 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhhhhhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555556667777544 455666778888888777433 1111122222233 3344678888888888888888888
Q ss_pred hhhhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy10418 279 LGYRNSDVDNLKRQIDRLTSTVRELRRKQRLSQVQ---VRGLIDERADFLAALQDHQREVAALKQQLG 343 (389)
Q Consensus 279 l~~k~~evEaLq~Q~~RL~~~n~eLRrk~~~~q~Q---~r~l~eekadl~a~lq~~~~ei~~L~~~lg 343 (389)
......|-++.+.-++|| |.||=+-++--..- +-+||-|=-=+...+...+.|...+++-++
T Consensus 156 keEl~~ERD~yk~K~~RL---N~ELn~~L~g~~~rivDIDaLi~ENRyL~erl~q~qeE~~l~k~~i~ 220 (319)
T PF09789_consen 156 KEELVTERDAYKCKAHRL---NHELNYILNGDENRIVDIDALIMENRYLKERLKQLQEEKELLKQTIN 220 (319)
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHhCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888999999999999 88886665543333 788999999999999999999998888775
No 32
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=88.87 E-value=55 Score=38.51 Aligned_cols=26 Identities=42% Similarity=0.630 Sum_probs=14.6
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHhh
Q psy10418 194 ELKEILHDRNTLKTRLNELEEERQCF 219 (389)
Q Consensus 194 ELreVL~ERNELKa~vf~LqEEl~~~ 219 (389)
++.++..+++++..++..+++++..+
T Consensus 745 ~~~~~~~~~~~~~~~~~~~~~~l~~~ 770 (1163)
T COG1196 745 ELEELEEELEELQERLEELEEELESL 770 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555666666666666544
No 33
>PRK09039 hypothetical protein; Validated
Probab=88.75 E-value=20 Score=36.54 Aligned_cols=29 Identities=17% Similarity=0.208 Sum_probs=11.0
Q ss_pred HHHHhhhhhhhhhhhHHHHHHHHHHHHHh
Q psy10418 271 QMRLKEKELGYRNSDVDNLKRQIDRLTST 299 (389)
Q Consensus 271 eiRak~~el~~k~~evEaLq~Q~~RL~~~ 299 (389)
+|.......+..+.+|..|+.||+.|...
T Consensus 124 ~L~~~k~~~se~~~~V~~L~~qI~aLr~Q 152 (343)
T PRK09039 124 ELDSEKQVSARALAQVELLNQQIAALRRQ 152 (343)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333
No 34
>PF15294 Leu_zip: Leucine zipper
Probab=88.63 E-value=8 Score=38.81 Aligned_cols=54 Identities=26% Similarity=0.388 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10418 286 VDNLKRQIDRLTSTVRELRRKQRLSQVQVRGLIDERADFLAALQDHQREVAALK 339 (389)
Q Consensus 286 vEaLq~Q~~RL~~~n~eLRrk~~~~q~Q~r~l~eekadl~a~lq~~~~ei~~L~ 339 (389)
++.|+.-++||..=|.-|+-|+.-++.|.-...++|..++++|.+.+...+...
T Consensus 127 ~~ll~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~~~~~~~ 180 (278)
T PF15294_consen 127 SELLNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQDEQGDQK 180 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 577999999999999999999999999999999999999999998888554444
No 35
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=88.57 E-value=14 Score=32.87 Aligned_cols=93 Identities=22% Similarity=0.347 Sum_probs=75.0
Q ss_pred chhhHHHHHHHHHHHHHhHHHHHHh---hhhhhhhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10418 251 PEIDISALQKLRGQVDSLRDQMRLK---EKELGYRNSDVDNLKRQIDRLTSTVRELRRKQRLSQVQVRGLIDERADFLAA 327 (389)
Q Consensus 251 ~~~d~~vm~kLKe~VdkQRdeiRak---~~el~~k~~evEaLq~Q~~RL~~~n~eLRrk~~~~q~Q~r~l~eekadl~a~ 327 (389)
+.....|+.-+-+.+...+...... ...+.....|++.|+..++||..-++++-|+...++...+++-..-..+.+.
T Consensus 30 ~~~~~~vin~i~~Ll~~~~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~ 109 (151)
T PF11559_consen 30 EDNDVRVINCIYDLLQQRDRDMEQREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAK 109 (151)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4457778888777775443333332 3455666778999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhh
Q psy10418 328 LQDHQREVAALKQQLG 343 (389)
Q Consensus 328 lq~~~~ei~~L~~~lg 343 (389)
+.....++..+...+.
T Consensus 110 ~k~~kee~~klk~~~~ 125 (151)
T PF11559_consen 110 LKQEKEELQKLKNQLQ 125 (151)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999888888886664
No 36
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=88.44 E-value=5.2 Score=40.31 Aligned_cols=123 Identities=21% Similarity=0.311 Sum_probs=73.5
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhhcCCCCCccCCCCchhhHHHHHHHHHHHHHhHHHHHHhhhhhhhh
Q psy10418 203 NTLKTRLNELEEERQCFKMVNRLQEENKKLSKRLEHEGSSPMKSQQLSPEIDISALQKLRGQVDSLRDQMRLKEKELGYR 282 (389)
Q Consensus 203 NELKa~vf~LqEEl~~~~~V~qLqeeNk~L~~~ls~~~~~~~~~~e~~~~~d~~vm~kLKe~VdkQRdeiRak~~el~~k 282 (389)
..|+.++..++.|.+.|.. ....++... + ..+. ...-..-+.+|+.-......+|+..+.+-...
T Consensus 12 ~~l~~~~~~~~~E~~~Y~~----------fL~~l~~~~--~--~~~~-~~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l 76 (314)
T PF04111_consen 12 EQLDKQLEQAEKERDTYQE----------FLKKLEEES--D--SEED-IEELEEELEKLEQEEEELLQELEELEKEREEL 76 (314)
T ss_dssp --------------------------------------------HH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH----------HHHHHHhcC--C--cchH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577788888888888864 111111100 0 0000 11123456667777788888888888888888
Q ss_pred hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10418 283 NSDVDNLKRQIDRLTSTVRELRRKQRLSQVQVRGLIDERADFLAALQDHQREVAALKQ 340 (389)
Q Consensus 283 ~~evEaLq~Q~~RL~~~n~eLRrk~~~~q~Q~r~l~eekadl~a~lq~~~~ei~~L~~ 340 (389)
..++.+|+.+...|...-...-+-....+.++..+.+++..+.+++.-....+..|++
T Consensus 77 ~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~~~~~~L~~L~k 134 (314)
T PF04111_consen 77 DQELEELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLKNQYEYASNQLDRLRK 134 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8889999999999988888888888889999999999999999988888888888874
No 37
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=88.41 E-value=4.9 Score=32.09 Aligned_cols=59 Identities=24% Similarity=0.400 Sum_probs=53.0
Q ss_pred hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy10418 285 DVDNLKRQIDRLTSTVRELRRKQRLSQVQVRGLIDERADFLAALQDHQREVAALKQQLG 343 (389)
Q Consensus 285 evEaLq~Q~~RL~~~n~eLRrk~~~~q~Q~r~l~eekadl~a~lq~~~~ei~~L~~~lg 343 (389)
|+.+|...+++|+.....|++-...+..|..++..+|+.|.......-.-|.+|=.+|-
T Consensus 1 ~L~~Le~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEamI~RLk 59 (65)
T TIGR02449 1 ELQALAAQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVEAMITRLK 59 (65)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 46789999999999999999999999999999999999999998888888887766663
No 38
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=88.20 E-value=47 Score=36.85 Aligned_cols=53 Identities=28% Similarity=0.312 Sum_probs=43.8
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy10418 291 RQIDRLTSTVRELRRKQRLSQVQVRGLIDERADFLAALQDHQREVAALKQQLG 343 (389)
Q Consensus 291 ~Q~~RL~~~n~eLRrk~~~~q~Q~r~l~eekadl~a~lq~~~~ei~~L~~~lg 343 (389)
.-+.|...-|.+|...+.=+|.-.-.|..+++++.-+||.-++-...|..+||
T Consensus 153 ~t~SRAlsQN~eLK~QL~Elq~~Fv~ltne~~elt~~lq~Eq~~~keL~~kl~ 205 (617)
T PF15070_consen 153 ATASRALSQNRELKEQLAELQDAFVKLTNENMELTSALQSEQHVKKELQKKLG 205 (617)
T ss_pred hHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHH
Confidence 34778888999999999999998888899999998888887777777766666
No 39
>KOG0996|consensus
Probab=87.44 E-value=71 Score=38.07 Aligned_cols=134 Identities=25% Similarity=0.319 Sum_probs=92.1
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHhhh-hhHHHHHHHHHHhhhhhhcCCCCCccCCCCchhhHHHHHHHHHHHHHhHHHH
Q psy10418 194 ELKEILHDRNTLKTRLNELEEERQCFK-MVNRLQEENKKLSKRLEHEGSSPMKSQQLSPEIDISALQKLRGQVDSLRDQM 272 (389)
Q Consensus 194 ELreVL~ERNELKa~vf~LqEEl~~~~-~V~qLqeeNk~L~~~ls~~~~~~~~~~e~~~~~d~~vm~kLKe~VdkQRdei 272 (389)
+|-..+..-|+.++.+.+.+.||..|. +-..+.-....|.+.|.....+ -......+..++.++++-.+++
T Consensus 487 el~~~~~~~n~~~~e~~vaesel~~L~~~~~~~~~~~e~lk~~L~~~~~~--------~~e~~~~l~~~k~~l~~~k~e~ 558 (1293)
T KOG0996|consen 487 ELMPLLKQVNEARSELDVAESELDILLSRHETGLKKVEELKGKLLASSES--------LKEKKTELDDLKEELPSLKQEL 558 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHhhhhHHHHH
Confidence 677778888999999999999998764 3233333334444444433211 2346678899999999999999
Q ss_pred HHhhhhhhhhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHhh
Q psy10418 273 RLKEKELGYRNSDVDNLKRQIDRLTSTVRELRRKQRLSQVQVRGLIDERADFLAALQDHQRE--VAALKQQLG 343 (389)
Q Consensus 273 Rak~~el~~k~~evEaLq~Q~~RL~~~n~eLRrk~~~~q~Q~r~l~eekadl~a~lq~~~~e--i~~L~~~lg 343 (389)
+-+..+|.....+...++.|+.++.-=..|++--.... .-+....++|...+.. |...-+|||
T Consensus 559 ~~~~k~l~~~~~e~~~~~~~~~~~rqrveE~ks~~~~~--------~s~~kVl~al~r~kesG~i~Gf~GRLG 623 (1293)
T KOG0996|consen 559 KEKEKELPKLRKEERNLKSQLNKLRQRVEEAKSSLSSS--------RSRNKVLDALMRLKESGRIPGFYGRLG 623 (1293)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--------hhhhHHHHHHHHHHHcCCCCccccccc
Confidence 99999999999999999998888776666655433332 3344455555544433 555567777
No 40
>PRK04863 mukB cell division protein MukB; Provisional
Probab=87.00 E-value=43 Score=40.80 Aligned_cols=34 Identities=21% Similarity=0.184 Sum_probs=23.2
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhHHHHHH
Q psy10418 192 TAELKEILHDRNTLKTRLNELEEERQCFKMVNRLQEE 228 (389)
Q Consensus 192 l~ELreVL~ERNELKa~vf~LqEEl~~~~~V~qLqee 228 (389)
+.++.+++ .+++.++-.|+++..-+.....+..+
T Consensus 309 L~rI~diL---~ELe~rL~kLEkQaEkA~kyleL~ee 342 (1486)
T PRK04863 309 LVEMAREL---AELNEAESDLEQDYQAASDHLNLVQT 342 (1486)
T ss_pred HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555665 67888888888888777665555553
No 41
>KOG4674|consensus
Probab=85.69 E-value=1e+02 Score=38.31 Aligned_cols=128 Identities=20% Similarity=0.222 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy10418 81 EREVEEIEESWKEETQQLVEMVNRLQEENKKLSKRLEHEGSSPMKSQQLSPEIDISVLQKLRGQVDSLRDQMRLKEKELG 160 (389)
Q Consensus 81 ~~Ele~~Ed~~r~E~~eL~~~V~~LqeeN~~L~~~Ls~~~~~~~~~~~~~~e~er~vm~kLKe~VdkQRDeiRake~eL~ 160 (389)
+..+..++..|..=.+.|+..+..+.+-+..+...+...... -+....-+..++..++..++.|--.+..+.
T Consensus 804 e~~i~eL~~el~~lk~klq~~~~~~r~l~~~~~~~l~~~~~~--------i~~~~~~~~~~~~~l~~~~~~~~~le~k~~ 875 (1822)
T KOG4674|consen 804 ESRIKELERELQKLKKKLQEKSSDLRELTNSLEKQLENAQNL--------VDELESELKSLLTSLDSVSTNIAKLEIKLS 875 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445555555555555555555544444444333322111 123445567778888999998887766655
Q ss_pred cccccCCCCCCccc--cc-ccccCCCCCCCCcccHHHHHHHHHhhHHHHHHHHHHHHHHHhhhhh
Q psy10418 161 YRNSDVDNSDIPDL--SN-KAVYDLDDPNRPRFTTAELKEILHDRNTLKTRLNELEEERQCFKMV 222 (389)
Q Consensus 161 ~k~~dve~l~~~~L--~~-~~~~d~~dpnrPrFTl~ELreVL~ERNELKa~vf~LqEEl~~~~~V 222 (389)
.-+..+.....+-+ .. ....|. -+-...||..+-+-+-||.+|-.-..++..|+..
T Consensus 876 eL~k~l~~~~~~~~~l~~~~~~~d~------~~~~~~Lr~~~eq~~~l~~~L~~a~s~i~~yqe~ 934 (1822)
T KOG4674|consen 876 ELEKRLKSAKTQLLNLDSKSSNEDA------TILEDTLRKELEEITDLKEELTDALSQIREYQEE 934 (1822)
T ss_pred HHHHHHHHhHHHHhhccccchhhhh------hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444332222211 00 001111 0111239999999999999999988888887753
No 42
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=84.97 E-value=37 Score=32.45 Aligned_cols=89 Identities=15% Similarity=0.349 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHHhHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10418 255 ISALQKLRGQVDSLRDQMRLKEKELGYRNSDVDNLKRQIDRLTSTVRELRRKQRLSQVQVRGLIDERADFLAALQDHQRE 334 (389)
Q Consensus 255 ~~vm~kLKe~VdkQRdeiRak~~el~~k~~evEaLq~Q~~RL~~~n~eLRrk~~~~q~Q~r~l~eekadl~a~lq~~~~e 334 (389)
..-...++..+...++.+......+......+++.+..+..+...+...+........-.....+...+....+......
T Consensus 55 ~~~~~~~~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (302)
T PF10186_consen 55 LLEIQQLKREIEELRERLERLRERIERLRKRIEQKRERLEELRESLEQRRSRLSASQDLVESRQEQLEELQNELEERKQR 134 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556666666666666666666666666666666666666666666655533333444444444455555555555
Q ss_pred HHHHHHHhh
Q psy10418 335 VAALKQQLG 343 (389)
Q Consensus 335 i~~L~~~lg 343 (389)
+..+...+.
T Consensus 135 l~~l~~~l~ 143 (302)
T PF10186_consen 135 LSQLQSQLA 143 (302)
T ss_pred HHHHHHHHH
Confidence 555544444
No 43
>KOG0995|consensus
Probab=83.88 E-value=23 Score=38.87 Aligned_cols=69 Identities=25% Similarity=0.325 Sum_probs=48.6
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHHHhhHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy10418 275 KEKELGYRNSDVDNLKRQIDRLTSTVRELR---RKQRLSQVQVRGLIDERADFLAALQDHQREVAALKQQLG 343 (389)
Q Consensus 275 k~~el~~k~~evEaLq~Q~~RL~~~n~eLR---rk~~~~q~Q~r~l~eekadl~a~lq~~~~ei~~L~~~lg 343 (389)
-...|...+++++.--+++++|...|.+|+ .++++.-++++-..-||-.+...|-+.+-++..|++.++
T Consensus 292 ~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~Q~iS~~dve~mn~Er~~l~r~l~~i~~~~d~l~k~vw 363 (581)
T KOG0995|consen 292 MEKKLEMLKSEIEEKEEEIEKLQKENDELKKQIELQGISGEDVERMNLERNKLKRELNKIQSELDRLSKEVW 363 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444555555555555555555554 356778888888889999999999999999999998886
No 44
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=83.23 E-value=44 Score=32.01 Aligned_cols=109 Identities=24% Similarity=0.344 Sum_probs=73.3
Q ss_pred HhhHHHHHHHHHHHHHHH-hhhhhHHHHHHHHHHhhhhhhcCCCCCccCCCCchhhHHHHHHHHHHHHHhHHHHHHhhhh
Q psy10418 200 HDRNTLKTRLNELEEERQ-CFKMVNRLQEENKKLSKRLEHEGSSPMKSQQLSPEIDISALQKLRGQVDSLRDQMRLKEKE 278 (389)
Q Consensus 200 ~ERNELKa~vf~LqEEl~-~~~~V~qLqeeNk~L~~~ls~~~~~~~~~~e~~~~~d~~vm~kLKe~VdkQRdeiRak~~e 278 (389)
-+.+-|-++.-.++.|-. ....|.-||++|.++......-.. .+.+-+. ... .|+-.|-.=-.-|.-++..
T Consensus 81 E~~~~L~aq~rqlEkE~q~L~~~i~~Lqeen~kl~~e~~~lk~---~~~eL~~--~~~---~Lq~Ql~~~e~l~~~~da~ 152 (193)
T PF14662_consen 81 EENRSLLAQARQLEKEQQSLVAEIETLQEENGKLLAERDGLKK---RSKELAT--EKA---TLQRQLCEFESLICQRDAI 152 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHH---HHHHHHH--hhH---HHHHHHHHHHHHHHHHHHH
Confidence 356667777777777775 447788888999888876664320 0000000 111 1222222222345666778
Q ss_pred hhhhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q psy10418 279 LGYRNSDVDNLKRQIDRLTSTVRELRRKQRLSQVQVRG 316 (389)
Q Consensus 279 l~~k~~evEaLq~Q~~RL~~~n~eLRrk~~~~q~Q~r~ 316 (389)
+..++..|+.|-..++....+..+||-..+.++.|+..
T Consensus 153 l~e~t~~i~eL~~~ieEy~~~teeLR~e~s~LEeql~q 190 (193)
T PF14662_consen 153 LSERTQQIEELKKTIEEYRSITEELRLEKSRLEEQLSQ 190 (193)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 89999999999999999999999999999999998854
No 45
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=82.72 E-value=1.1e+02 Score=36.42 Aligned_cols=97 Identities=13% Similarity=0.285 Sum_probs=49.2
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHhh-------hhhHHHHHHHHHHhhhhhhcCCCCCccCCCCchhhHHHHHHHHHHHH
Q psy10418 194 ELKEILHDRNTLKTRLNELEEERQCF-------KMVNRLQEENKKLSKRLEHEGSSPMKSQQLSPEIDISALQKLRGQVD 266 (389)
Q Consensus 194 ELreVL~ERNELKa~vf~LqEEl~~~-------~~V~qLqeeNk~L~~~ls~~~~~~~~~~e~~~~~d~~vm~kLKe~Vd 266 (389)
+++++-.+-.++.+.+-.+..++... .-|.++..+...+...+..-... .. ...+ + .-+..|..-+.
T Consensus 759 ~l~~~~~~le~~~~~l~~~~~~~~~~esL~~~v~~i~r~~~ei~~l~~qie~l~~~-l~--~~~~--~-~s~~ele~ei~ 832 (1311)
T TIGR00606 759 DIQRLKNDIEEQETLLGTIMPEEESAKVCLTDVTIMERFQMELKDVERKIAQQAAK-LQ--GSDL--D-RTVQQVNQEKQ 832 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hc--cccc--c-CCHHHHHHHHH
Confidence 45555555555566666666666433 22344455555555555532200 00 0000 1 13344555556
Q ss_pred HhHHHHHHhhhhhhhhhhhHHHHHHHHHHH
Q psy10418 267 SLRDQMRLKEKELGYRNSDVDNLKRQIDRL 296 (389)
Q Consensus 267 kQRdeiRak~~el~~k~~evEaLq~Q~~RL 296 (389)
.-..+|++...++.....+.+.++.++.+|
T Consensus 833 ~~~~el~~l~~~~e~l~~e~e~~~~eI~~L 862 (1311)
T TIGR00606 833 EKQHELDTVVSKIELNRKLIQDQQEQIQHL 862 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666566666666666666666666
No 46
>KOG0995|consensus
Probab=82.41 E-value=84 Score=34.66 Aligned_cols=31 Identities=23% Similarity=0.416 Sum_probs=28.3
Q ss_pred cccHHHHHHHHHhhHHHHHHHHHHHHHHHhh
Q psy10418 189 RFTTAELKEILHDRNTLKTRLNELEEERQCF 219 (389)
Q Consensus 189 rFTl~ELreVL~ERNELKa~vf~LqEEl~~~ 219 (389)
.||..+++.+=+|||+|+-.|..++=+++-+
T Consensus 328 ~iS~~dve~mn~Er~~l~r~l~~i~~~~d~l 358 (581)
T KOG0995|consen 328 GISGEDVERMNLERNKLKRELNKIQSELDRL 358 (581)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5999999999999999999999999888754
No 47
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=82.25 E-value=93 Score=35.05 Aligned_cols=222 Identities=22% Similarity=0.305 Sum_probs=128.4
Q ss_pred hHHHhhhhhhHHHHhHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCccCCCCchHHHHHH
Q psy10418 64 KLQELGDHISKLEHEKL-----EREVEEIEESWKEETQQLVEMVNRLQEENKKLSKRLEHEGSSPMKSQQLSPEIDISVL 138 (389)
Q Consensus 64 ~~e~L~~~~~qle~Ek~-----~~Ele~~Ed~~r~E~~eL~~~V~~LqeeN~~L~~~Ls~~~~~~~~~~~~~~e~er~vm 138 (389)
....|..++.+|+.|-+ ++||-.....+....+.|...+.+++-+|..|...+..... +.+.|++-|
T Consensus 419 a~~rLE~dvkkLraeLq~~Rq~E~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~Kl~~L~~--------aRq~DKq~l 490 (697)
T PF09726_consen 419 AISRLEADVKKLRAELQSSRQSEQELRSQISSLTNNERSLKSELSQLRQENEQLQNKLQNLVQ--------ARQQDKQSL 490 (697)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHH
Confidence 34456666666655522 66666665556666677888888888888888888876543 234588888
Q ss_pred HHHHHHHHHHHHHHHHH---Hhhhhc----ccccCCCCCCcccccccccCCCCCCCCcccHHHHHHHHHhhHHHHHHHHH
Q psy10418 139 QKLRGQVDSLRDQMRLK---EKELGY----RNSDVDNSDIPDLSNKAVYDLDDPNRPRFTTAELKEILHDRNTLKTRLNE 211 (389)
Q Consensus 139 ~kLKe~VdkQRDeiRak---e~eL~~----k~~dve~l~~~~L~~~~~~d~~dpnrPrFTl~ELreVL~ERNELKa~vf~ 211 (389)
.-|...+ ++|.|++ |.+|.. +-.+.+....+ +. .+.-|..|--+
T Consensus 491 ~~LEkrL---~eE~~~R~~lEkQL~eErk~r~~ee~~aar~-~~-----------~~~~~r~e~~e-------------- 541 (697)
T PF09726_consen 491 QQLEKRL---AEERRQRASLEKQLQEERKARKEEEEKAARA-LA-----------QAQATRQECAE-------------- 541 (697)
T ss_pred HHHHHHH---HHHHHHHHHHHHHHHHHHHHHhHHHHhhhhc-cc-----------cchhccchhHH--------------
Confidence 8776653 4444432 444421 11111100000 00 01111111111
Q ss_pred HHHHHHhhhhhHHHHHHHHHHhhhhhhcCCCCCccCCCCchhhHHHHHHHHHHHHHhHHHHHHhhhhhhhhhhhHHHHHH
Q psy10418 212 LEEERQCFKMVNRLQEENKKLSKRLEHEGSSPMKSQQLSPEIDISALQKLRGQVDSLRDQMRLKEKELGYRNSDVDNLKR 291 (389)
Q Consensus 212 LqEEl~~~~~V~qLqeeNk~L~~~ls~~~~~~~~~~e~~~~~d~~vm~kLKe~VdkQRdeiRak~~el~~k~~evEaLq~ 291 (389)
.|-++..+|..|.++|...|..++ +-+..|..-+-..|.-=+.-..+.....+-+-|||+
T Consensus 542 -----~~r~r~~~lE~E~~~lr~elk~ke---------------e~~~~~e~~~~~lr~~~~e~~~~~e~L~~aL~amqd 601 (697)
T PF09726_consen 542 -----SCRQRRRQLESELKKLRRELKQKE---------------EQIRELESELQELRKYEKESEKDTEVLMSALSAMQD 601 (697)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Confidence 345667788889999998888774 222222222211111101122344444444557888
Q ss_pred HHHHHHH-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy10418 292 QIDRLTS-TVRELRRKQRLSQVQVRGLIDERADFLAALQDHQREVAALKQQLG 343 (389)
Q Consensus 292 Q~~RL~~-~n~eLRrk~~~~q~Q~r~l~eekadl~a~lq~~~~ei~~L~~~lg 343 (389)
-...|-+ .-+|-|=|+.++.+=|.+ -.+-..++.++..+++||..|++++.
T Consensus 602 k~~~LE~sLsaEtriKldLfsaLg~a-krq~ei~~~~~~~~d~ei~~lk~ki~ 653 (697)
T PF09726_consen 602 KNQHLENSLSAETRIKLDLFSALGDA-KRQLEIAQGQLRKKDKEIEELKAKIA 653 (697)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777765 457889999998875543 34455677889999999999999886
No 48
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=82.11 E-value=70 Score=33.48 Aligned_cols=67 Identities=18% Similarity=0.267 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhc---ccccCCCCCCcccccccccCCCCCCCCcccHHHHHHHHHhhHHHHHHHHHHH
Q psy10418 137 VLQKLRGQVDSLRDQMRLKEKELGY---RNSDVDNSDIPDLSNKAVYDLDDPNRPRFTTAELKEILHDRNTLKTRLNELE 213 (389)
Q Consensus 137 vm~kLKe~VdkQRDeiRake~eL~~---k~~dve~l~~~~L~~~~~~d~~dpnrPrFTl~ELreVL~ERNELKa~vf~Lq 213 (389)
...=|..++++.++++...+..|.. ++..+ +|...-+....+.++-++.+..++++..++
T Consensus 162 ~~~fl~~ql~~~~~~L~~ae~~l~~f~~~~~~~-----------------~~~~~~~~~~~l~~l~~~l~~~~~~l~~~~ 224 (498)
T TIGR03007 162 AQRFIDEQIKTYEKKLEAAENRLKAFKQENGGI-----------------LPDQEGDYYSEISEAQEELEAARLELNEAI 224 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccc-----------------CccchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556677777777777766642 22111 122222344566666666666666666555
Q ss_pred HHHHhhh
Q psy10418 214 EERQCFK 220 (389)
Q Consensus 214 EEl~~~~ 220 (389)
.-++.++
T Consensus 225 a~~~~l~ 231 (498)
T TIGR03007 225 AQRDALK 231 (498)
T ss_pred HHHHHHH
Confidence 5555443
No 49
>PRK02224 chromosome segregation protein; Provisional
Probab=81.83 E-value=96 Score=34.89 Aligned_cols=86 Identities=21% Similarity=0.288 Sum_probs=41.0
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHhhhh-hHHHHHHHHHHhhhhhhcCCCCCccCCCCchhhHHHHHHHHHHHHHhHHHH
Q psy10418 194 ELKEILHDRNTLKTRLNELEEERQCFKM-VNRLQEENKKLSKRLEHEGSSPMKSQQLSPEIDISALQKLRGQVDSLRDQM 272 (389)
Q Consensus 194 ELreVL~ERNELKa~vf~LqEEl~~~~~-V~qLqeeNk~L~~~ls~~~~~~~~~~e~~~~~d~~vm~kLKe~VdkQRdei 272 (389)
.|.++-.+.++++.++-.++..+.+|+. +..+. ..+....| |.=....+.+....++..++..+++-++.+
T Consensus 413 ~l~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~~-------~~l~~~~C-p~C~r~~~~~~~~~~~~~~~~~~~~~~~~~ 484 (880)
T PRK02224 413 FLEELREERDELREREAELEATLRTARERVEEAE-------ALLEAGKC-PECGQPVEGSPHVETIEEDRERVEELEAEL 484 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHhcccC-CCCCCcCCCcchhhhHHHHHHHHHHHHHHH
Confidence 4555556666777777777776666652 22221 11111111 110001111222366777777777655555
Q ss_pred HHhhhhhhhhhhhHH
Q psy10418 273 RLKEKELGYRNSDVD 287 (389)
Q Consensus 273 Rak~~el~~k~~evE 287 (389)
.....++......++
T Consensus 485 ~~le~~l~~~~~~~e 499 (880)
T PRK02224 485 EDLEEEVEEVEERLE 499 (880)
T ss_pred HHHHHHHHHHHHHHH
Confidence 555555554444443
No 50
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=81.80 E-value=19 Score=28.86 Aligned_cols=57 Identities=26% Similarity=0.377 Sum_probs=47.9
Q ss_pred hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-HHHHh
Q psy10418 285 DVDNLKRQIDRLTSTVRELRRKQRLSQVQVRGLIDERADFLAALQDHQREVAALKQQLG-LAEKE 348 (389)
Q Consensus 285 evEaLq~Q~~RL~~~n~eLRrk~~~~q~Q~r~l~eekadl~a~lq~~~~ei~~L~~~lg-~~~k~ 348 (389)
.+.+|+..++++. ||..+.+.=.++|..||.-+..+|.....++..|+.++. +++++
T Consensus 6 ~~~~Lr~rLd~~~-------rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el 63 (69)
T PF14197_consen 6 EIATLRNRLDSLT-------RKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKEL 63 (69)
T ss_pred HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667777777665 566888999999999999999999999999999999998 55543
No 51
>KOG0612|consensus
Probab=81.24 E-value=1.3e+02 Score=36.09 Aligned_cols=27 Identities=22% Similarity=0.266 Sum_probs=17.2
Q ss_pred CcccHHHHHHHHHhhHHHHHHHHHHHHHHH
Q psy10418 188 PRFTTAELKEILHDRNTLKTRLNELEEERQ 217 (389)
Q Consensus 188 PrFTl~ELreVL~ERNELKa~vf~LqEEl~ 217 (389)
++++++.+.+ +.+.+-..+-.+++...
T Consensus 572 ~~~~iq~~~e---~~~~~~d~l~~le~~k~ 598 (1317)
T KOG0612|consen 572 LSKQIQQELE---ENRDLEDKLSLLEESKS 598 (1317)
T ss_pred hhHHHHHHhh---ccccHHHHHHHHHHHHH
Confidence 3455554444 77777777777777643
No 52
>KOG0999|consensus
Probab=79.55 E-value=57 Score=36.11 Aligned_cols=112 Identities=22% Similarity=0.282 Sum_probs=61.6
Q ss_pred HHHHhhHHHHHHHHHHHHHHHhhhh-hHHHHHHHHHHhhhhhhcCCCCCccCC----CCchhhHHHHHHHHHHHHHhHHH
Q psy10418 197 EILHDRNTLKTRLNELEEERQCFKM-VNRLQEENKKLSKRLEHEGSSPMKSQQ----LSPEIDISALQKLRGQVDSLRDQ 271 (389)
Q Consensus 197 eVL~ERNELKa~vf~LqEEl~~~~~-V~qLqeeNk~L~~~ls~~~~~~~~~~e----~~~~~d~~vm~kLKe~VdkQRde 271 (389)
.||.|+..||.++-.|+-+.+..+. +-++++..-+-.++-.....+...+-+ .++..+-..+.+
T Consensus 40 ~lLeeK~~Lkqq~eEleaeyd~~R~Eldqtkeal~q~~s~hkk~~~~g~e~EesLLqESaakE~~yl~k----------- 108 (772)
T KOG0999|consen 40 ELLEEKEDLKQQLEELEAEYDLARTELDQTKEALGQYRSQHKKVARDGEEREESLLQESAAKEEYYLQK----------- 108 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHhHHHHHHH-----------
Confidence 5889999999999999988876643 233333222222111111000000000 111222233332
Q ss_pred HHHhhhhhhhhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q psy10418 272 MRLKEKELGYRNSDVDNLKRQIDRLTSTVRELRRKQRLSQVQVRGLID 319 (389)
Q Consensus 272 iRak~~el~~k~~evEaLq~Q~~RL~~~n~eLRrk~~~~q~Q~r~l~e 319 (389)
|--...+|..+..++...++..+|+.+++.++.+-...+..|-+-|-.
T Consensus 109 I~eleneLKq~r~el~~~q~E~erl~~~~sd~~e~~~~~E~qR~rlr~ 156 (772)
T KOG0999|consen 109 ILELENELKQLRQELTNVQEENERLEKVHSDLKESNAAVEDQRRRLRD 156 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHH
Confidence 333344555555666777888888888888888887777777655543
No 53
>KOG0288|consensus
Probab=78.96 E-value=65 Score=34.35 Aligned_cols=126 Identities=19% Similarity=0.147 Sum_probs=78.6
Q ss_pred HHhhHHHHHHHHHHHHHH-HhhhhhHHHHHHHHHHhhhhhhcCCCCCccCCCCchhhHHHHHHHHHHHHHhHHHHHHhhh
Q psy10418 199 LHDRNTLKTRLNELEEER-QCFKMVNRLQEENKKLSKRLEHEGSSPMKSQQLSPEIDISALQKLRGQVDSLRDQMRLKEK 277 (389)
Q Consensus 199 L~ERNELKa~vf~LqEEl-~~~~~V~qLqeeNk~L~~~ls~~~~~~~~~~e~~~~~d~~vm~kLKe~VdkQRdeiRak~~ 277 (389)
.--.-++++++-.++++| ++|++.+.+.++|-.+.-..... +-.+-.-.-+|+....
T Consensus 5 ~s~~s~~dqr~~~~~~~laq~~k~~s~~~aq~~~~~a~~~ai----------------------~a~~~~~E~~l~~Lq~ 62 (459)
T KOG0288|consen 5 YSQKSENDQRLIDLNTELAQCEKAQSRLSAQLVILRAESRAI----------------------KAKLQEKELELNRLQE 62 (459)
T ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------HHHHHHHHHHHHHHHH
Confidence 344668899999999999 48898888887766655433221 1112222234444444
Q ss_pred hhhhhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q psy10418 278 ELGYRNSDVDNLKRQIDRLTSTVRELRRKQRLSQVQVRGLIDERADFLAALQDHQREVAALKQQLGLAE 346 (389)
Q Consensus 278 el~~k~~evEaLq~Q~~RL~~~n~eLRrk~~~~q~Q~r~l~eekadl~a~lq~~~~ei~~L~~~lg~~~ 346 (389)
|.+..+.+-=+..--..++++-....+-+.-.+++-+|.+-+++++|.-.--..+.....+|-..-+++
T Consensus 63 e~~~l~e~~v~~~a~~~~~t~~~~~~en~~~r~~~eir~~~~q~~e~~n~~~~l~~~~~~~r~~e~la~ 131 (459)
T KOG0288|consen 63 ENTQLNEERVREEATEKTLTVDVLIAENLRIRSLNEIRELREQKAEFENAELALREMRRKMRIAERLAE 131 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccchhhHHHHHHHHHHHHHHHH
Confidence 555555553333344455555555666666777888899999999998776666655666665554544
No 54
>KOG0250|consensus
Probab=78.67 E-value=1.3e+02 Score=35.69 Aligned_cols=25 Identities=24% Similarity=0.292 Sum_probs=13.4
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHH
Q psy10418 193 AELKEILHDRNTLKTRLNELEEERQ 217 (389)
Q Consensus 193 ~ELreVL~ERNELKa~vf~LqEEl~ 217 (389)
+|+.+.|..--.++.++..|+-+|.
T Consensus 248 ~e~~~~~~~~e~~~~~l~~Lk~k~~ 272 (1074)
T KOG0250|consen 248 EEKLDNLEQLEDLKENLEQLKAKMA 272 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555556655555554
No 55
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=78.62 E-value=45 Score=29.45 Aligned_cols=86 Identities=24% Similarity=0.387 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHHHhHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10418 255 ISALQKLRGQVDSLRDQMRLKEKELGYRNSDVDNLKRQIDRLTSTVRELRRKQRLSQVQVRGLIDERADFLAALQDHQRE 334 (389)
Q Consensus 255 ~~vm~kLKe~VdkQRdeiRak~~el~~k~~evEaLq~Q~~RL~~~n~eLRrk~~~~q~Q~r~l~eekadl~a~lq~~~~e 334 (389)
..++.+|...|.+-..+|-+...++......=+.+.+.+=+|+.-|.++ +....+-..+.+.+++.+..
T Consensus 15 ~~~ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~-----------~~~~~~~~~L~~el~~l~~r 83 (120)
T PF12325_consen 15 VQLVERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEEL-----------RALKKEVEELEQELEELQQR 83 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHH
Confidence 4788888888887777777777777777777778888888888888775 44455556666666666666
Q ss_pred HHHHHHHhhHHHHhhhh
Q psy10418 335 VAALKQQLGLAEKENED 351 (389)
Q Consensus 335 i~~L~~~lg~~~k~~~d 351 (389)
-.++-.=+|-.....+.
T Consensus 84 y~t~LellGEK~E~veE 100 (120)
T PF12325_consen 84 YQTLLELLGEKSEEVEE 100 (120)
T ss_pred HHHHHHHhcchHHHHHH
Confidence 66666666644444333
No 56
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=78.57 E-value=57 Score=30.65 Aligned_cols=29 Identities=24% Similarity=0.370 Sum_probs=20.6
Q ss_pred HHHHHHHHhhCcchhhchhhHHHHHHHhHHHHhccc
Q psy10418 23 KEFEKIIDQYGPDAVTSIMPKVIVALEHLECLASKN 58 (389)
Q Consensus 23 ~EfErli~~~G~d~V~~LmpkVV~vLElLEs~~~~~ 58 (389)
+|+|+++. .++|++|..|+ |+|-+||..+
T Consensus 15 KELEK~~p-----K~~gI~~~~VK--dvlq~LvDDg 43 (188)
T PF03962_consen 15 KELEKLAP-----KEKGIVSMSVK--DVLQSLVDDG 43 (188)
T ss_pred HHHHHHcc-----cccCCchhhHH--HHHHHHhccc
Confidence 79999964 34577776665 6678888754
No 57
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=78.12 E-value=49 Score=29.32 Aligned_cols=84 Identities=20% Similarity=0.422 Sum_probs=66.7
Q ss_pred HHHHHHHHHHHhHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10418 257 ALQKLRGQVDSLRDQMRLKEKELGYRNSDVDNLKRQIDRLTSTVRELRRKQRLSQVQVRGLIDERADFLAALQDHQREVA 336 (389)
Q Consensus 257 vm~kLKe~VdkQRdeiRak~~el~~k~~evEaLq~Q~~RL~~~n~eLRrk~~~~q~Q~r~l~eekadl~a~lq~~~~ei~ 336 (389)
-+.+|...+.+-.+.+-...+++.......-+++.++..+...+..++.-+.-+++ .+-..++.+...+..+++||.
T Consensus 67 d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~klk~---~~~~~~tq~~~e~rkke~E~~ 143 (151)
T PF11559_consen 67 DIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQKLKN---QLQQRKTQYEHELRKKEREIE 143 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 35566777777888888888888888888888888888888888777765555444 445567889999999999999
Q ss_pred HHHHHhh
Q psy10418 337 ALKQQLG 343 (389)
Q Consensus 337 ~L~~~lg 343 (389)
.|+.+|+
T Consensus 144 kLk~rL~ 150 (151)
T PF11559_consen 144 KLKERLN 150 (151)
T ss_pred HHHHHhc
Confidence 9999885
No 58
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=77.76 E-value=23 Score=28.57 Aligned_cols=68 Identities=18% Similarity=0.350 Sum_probs=52.7
Q ss_pred HHHHHHhhhhhhhhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy10418 269 RDQMRLKEKELGYRNSDVDNLKRQIDRLTSTVRELRRKQRLSQVQVRGLIDERADFLAALQDHQREVAALKQQLG 343 (389)
Q Consensus 269 RdeiRak~~el~~k~~evEaLq~Q~~RL~~~n~eLRrk~~~~q~Q~r~l~eekadl~a~lq~~~~ei~~L~~~lg 343 (389)
.+.|+.|+-.|.....+-++|+.+.-.+..+..-||-+.+-...++..+-... .....++..|+.+++
T Consensus 4 ~~~l~EKDe~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~-------~~~e~~~~~l~~~l~ 71 (74)
T PF12329_consen 4 EKKLAEKDEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKL-------EELEKELESLEERLK 71 (74)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHhh
Confidence 35688899999999999999999999999999999888888887777666444 444555556655554
No 59
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=77.56 E-value=44 Score=32.19 Aligned_cols=44 Identities=16% Similarity=0.180 Sum_probs=21.8
Q ss_pred hhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10418 281 YRNSDVDNLKRQIDRLTSTVRELRRKQRLSQVQVRGLIDERADF 324 (389)
Q Consensus 281 ~k~~evEaLq~Q~~RL~~~n~eLRrk~~~~q~Q~r~l~eekadl 324 (389)
.|+.+++..+..+.|...-..=||.|+..+.+.+..|.+.-+.+
T Consensus 63 ~K~~ELE~ce~ELqr~~~Ea~lLrekl~~le~El~~Lr~~l~~~ 106 (202)
T PF06818_consen 63 TKQLELEVCENELQRKKNEAELLREKLGQLEAELAELREELACA 106 (202)
T ss_pred HhhHhHHHhHHHHHHHhCHHHHhhhhhhhhHHHHHHHHHHHHhh
Confidence 33444555555555555444445555555555555444444443
No 60
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=77.50 E-value=29 Score=32.33 Aligned_cols=21 Identities=24% Similarity=0.389 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhh
Q psy10418 96 QQLVEMVNRLQEENKKLSKRL 116 (389)
Q Consensus 96 ~eL~~~V~~LqeeN~~L~~~L 116 (389)
..|..++..|..+|..|....
T Consensus 27 ~~L~d~~~~l~~~~~~l~~~~ 47 (194)
T PF08614_consen 27 NRLADRTSLLKAENEQLQPEA 47 (194)
T ss_dssp ---------------------
T ss_pred ccccccccccccccccccccc
Confidence 677778888888887777643
No 61
>KOG4657|consensus
Probab=76.08 E-value=85 Score=31.02 Aligned_cols=149 Identities=17% Similarity=0.172 Sum_probs=74.1
Q ss_pred HHHHHHHHHHHHHHHHHhhCcchhhchhhHHHHHHHhHHHHhccccccchhHHHhhhhhhHHHHhHH-----HHHHHHHH
Q psy10418 14 VFDIASEIGKEFEKIIDQYGPDAVTSIMPKVIVALEHLECLASKNERENTKLQELGDHISKLEHEKL-----EREVEEIE 88 (389)
Q Consensus 14 VydiA~~IG~EfErli~~~G~d~V~~LmpkVV~vLElLEs~~~~~~~e~~~~e~L~~~~~qle~Ek~-----~~Ele~~E 88 (389)
-||+..+=-..+-.+||+|=.+.-..+|--.+.-++ .++-.+ ++.+-|..++.+.+.+.. -.+-+..-
T Consensus 16 l~d~~~~~i~n~~s~~D~f~q~~r~~~~nS~~efar---~lS~~~----~e~e~l~~~l~etene~~~~neL~~ek~~~q 88 (246)
T KOG4657|consen 16 LGDICEKDIHNQRSKIDSFIQSPRRRSMNSLVEFAR---ALSQSQ----VELENLKADLRETENELVKVNELKTEKEARQ 88 (246)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345544444556677787766666667766666554 333333 444555555544444433 11112222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCccCCCCchHHHHHHHHHHHHHHHHHH-HHHHHHhhh--hccccc
Q psy10418 89 ESWKEETQQLVEMVNRLQEENKKLSKRLEHEGSSPMKSQQLSPEIDISVLQKLRGQVDSLRD-QMRLKEKEL--GYRNSD 165 (389)
Q Consensus 89 d~~r~E~~eL~~~V~~LqeeN~~L~~~Ls~~~~~~~~~~~~~~e~er~vm~kLKe~VdkQRD-eiRake~eL--~~k~~d 165 (389)
.-.+.+++.+++.++.|.--++-|... |-.+|++|..+|. +.||++... .+++.+
T Consensus 89 ~~ieqeik~~q~elEvl~~n~Q~lkeE----------------------~dd~keiIs~kr~~~~Ka~e~~~kRkQdsa~ 146 (246)
T KOG4657|consen 89 MGIEQEIKATQSELEVLRRNLQLLKEE----------------------KDDSKEIISQKRQALSKAKENAGKRKQDSAD 146 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------hhhHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Confidence 234455555555555444333333221 2256777777775 445555543 233333
Q ss_pred CC--------CCCCccccc--------ccccCCCCCCCCc-cc
Q psy10418 166 VD--------NSDIPDLSN--------KAVYDLDDPNRPR-FT 191 (389)
Q Consensus 166 ve--------~l~~~~L~~--------~~~~d~~dpnrPr-FT 191 (389)
++ .|+..--+. =..+|++||++|= ||
T Consensus 147 ~~e~a~wy~dyLGleie~~hgevikfiFTnIdpkdp~~~FsF~ 189 (246)
T KOG4657|consen 147 IHEAASWYNDYLGLEIEAGHGEVIKFIFTNIDPKDPTREFSFT 189 (246)
T ss_pred cHHHHHHHHHhcCceeeeccCceEEEEEeccCCCCCccceeeE
Confidence 32 133221111 1357899999985 44
No 62
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=75.64 E-value=30 Score=36.82 Aligned_cols=43 Identities=12% Similarity=0.296 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy10418 301 RELRRKQRLSQVQVRGLIDERADFLAALQDHQREVAALKQQLG 343 (389)
Q Consensus 301 ~eLRrk~~~~q~Q~r~l~eekadl~a~lq~~~~ei~~L~~~lg 343 (389)
.++..-...+..|...+..+..++.+.+.+.+++|..|+.+|.
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~ 169 (525)
T TIGR02231 127 KEWFQAFDFNGSEIERLLTEDREAERRIRELEKQLSELQNELN 169 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777788889999999999999999999999999998886
No 63
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=74.40 E-value=29 Score=32.30 Aligned_cols=106 Identities=22% Similarity=0.291 Sum_probs=32.9
Q ss_pred CCcccHH-HHHHHHHhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhhcCCCCCccCCCCchhhHHHHHHHHHHH
Q psy10418 187 RPRFTTA-ELKEILHDRNTLKTRLNELEEERQCFKMVNRLQEENKKLSKRLEHEGSSPMKSQQLSPEIDISALQKLRGQV 265 (389)
Q Consensus 187 rPrFTl~-ELreVL~ERNELKa~vf~LqEEl~~~~~V~qLqeeNk~L~~~ls~~~~~~~~~~e~~~~~d~~vm~kLKe~V 265 (389)
-..++++ ||-++...|.++-.+|..+..++..+.. .......-+..|...+
T Consensus 74 ~~~~~l~~ELael~r~~~el~~~L~~~~~~l~~l~~----------------------------~~~~~~~~l~~l~~~~ 125 (194)
T PF08614_consen 74 QKLAKLQEELAELYRSKGELAQQLVELNDELQELEK----------------------------ELSEKERRLAELEAEL 125 (194)
T ss_dssp --------------------------------------------------------------------HHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccchhhh----------------------------hHHHHHHHHHHHHHHH
Confidence 3344443 6666666666666666666666654432 0112234455555555
Q ss_pred HHhHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q psy10418 266 DSLRDQMRLKEKELGYRNSDVDNLKRQIDRLTSTVRELRRKQRLSQVQVRGLIDE 320 (389)
Q Consensus 266 dkQRdeiRak~~el~~k~~evEaLq~Q~~RL~~~n~eLRrk~~~~q~Q~r~l~ee 320 (389)
..-+.+|+....+|..++..++.|+.-+.-|.--+.-+--|...++.--+.||++
T Consensus 126 ~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~R 180 (194)
T PF08614_consen 126 AQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENRELVER 180 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555566666666666655555555544444433333333334444444444433
No 64
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=73.44 E-value=1.1e+02 Score=31.34 Aligned_cols=96 Identities=21% Similarity=0.286 Sum_probs=48.6
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhhcC--CCCCccCCCCchhhHHHHHHHHHHHHHhH
Q psy10418 192 TAELKEILHDRNTLKTRLNELEEERQCFKMVNRLQEENKKLSKRLEHEG--SSPMKSQQLSPEIDISALQKLRGQVDSLR 269 (389)
Q Consensus 192 l~ELreVL~ERNELKa~vf~LqEEl~~~~~V~qLqeeNk~L~~~ls~~~--~~~~~~~e~~~~~d~~vm~kLKe~VdkQR 269 (389)
-+||..--.||+.+|.-+.-|++.-..++. .+..+.-...... ..++.+ .. ..=..++...++...+-.
T Consensus 15 ~~eLe~cq~ErDqyKlMAEqLqer~q~LKk------k~~el~~~~~~~~d~~~~~~~-~~--~~La~lL~~sre~Nk~L~ 85 (319)
T PF09789_consen 15 SQELEKCQSERDQYKLMAEQLQERYQALKK------KYRELIQEAAGFGDPSIPPEK-EN--KNLAQLLSESREQNKKLK 85 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHhhhhhcccCCccCCccc-ch--hhHHHHHHHHHHHHHHHH
Confidence 467888888999999887777766554443 1111111100010 000000 00 011244555555555555
Q ss_pred HHHHHhhhhhhhhhhhHHHHHHHHHHH
Q psy10418 270 DQMRLKEKELGYRNSDVDNLKRQIDRL 296 (389)
Q Consensus 270 deiRak~~el~~k~~evEaLq~Q~~RL 296 (389)
.++...-..|..-..|+-.|-+++.|.
T Consensus 86 ~Ev~~Lrqkl~E~qGD~KlLR~~la~~ 112 (319)
T PF09789_consen 86 EEVEELRQKLNEAQGDIKLLREKLARQ 112 (319)
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHHhh
Confidence 555555555555566666666655543
No 65
>KOG1962|consensus
Probab=73.26 E-value=46 Score=32.36 Aligned_cols=80 Identities=28% Similarity=0.375 Sum_probs=60.2
Q ss_pred HHHHHHHHHhhhhhhcCCCCCccCCCCchhhHHHHHHHHHHHHHhHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHhhHHH
Q psy10418 224 RLQEENKKLSKRLEHEGSSPMKSQQLSPEIDISALQKLRGQVDSLRDQMRLKEKELGYRNSDVDNLKRQIDRLTSTVREL 303 (389)
Q Consensus 224 qLqeeNk~L~~~ls~~~~~~~~~~e~~~~~d~~vm~kLKe~VdkQRdeiRak~~el~~k~~evEaLq~Q~~RL~~~n~eL 303 (389)
+.+.+|..+.+.+..... -+ +=+.++++-..+-+++++.+..+|..-..+++||..|.+.+..----|
T Consensus 131 ~~~~~~~~lk~~~~~~~~---------~~---~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrL 198 (216)
T KOG1962|consen 131 KAMKENEALKKQLENSSK---------LE---EENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRL 198 (216)
T ss_pred HHHHHHHHHHHhhhcccc---------hh---hhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHH
Confidence 344467777766655420 12 335567788889999999999999999999999999999888777777
Q ss_pred HHHHHHHHHHHH
Q psy10418 304 RRKQRLSQVQVR 315 (389)
Q Consensus 304 Rrk~~~~q~Q~r 315 (389)
--++.-+|.|+-
T Consensus 199 lee~~~Lq~~i~ 210 (216)
T KOG1962|consen 199 LEEYSKLQEQIE 210 (216)
T ss_pred HHHHHHHHHHHh
Confidence 777777777753
No 66
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=72.30 E-value=92 Score=34.21 Aligned_cols=128 Identities=16% Similarity=0.302 Sum_probs=0.0
Q ss_pred HHH--HHhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhhcCCCCCccCCCCchhhHHHHHHHHHHHHHhHHHHH
Q psy10418 196 KEI--LHDRNTLKTRLNELEEERQCFKMVNRLQEENKKLSKRLEHEGSSPMKSQQLSPEIDISALQKLRGQVDSLRDQMR 273 (389)
Q Consensus 196 reV--L~ERNELKa~vf~LqEEl~~~~~V~qLqeeNk~L~~~ls~~~~~~~~~~e~~~~~d~~vm~kLKe~VdkQRdeiR 273 (389)
..| |.+.+..-..++..=..|--+..+.+|..+...+....... .....+...++....+|+
T Consensus 156 E~I~~la~~~~~~~~l~~Ai~~LlGl~~~~~L~~dl~~~~~~~~~~----------------~~~~~~~~~~~~le~el~ 219 (650)
T TIGR03185 156 EKIEALANPDRLASLLKEAIEVLLGLDLIDRLAGDLTNVLRRRKKS----------------ELPSSILSEIEALEAELK 219 (650)
T ss_pred HHHHHHhccccchHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhc----------------ccchHHHHHHHHHHHHHH
Q ss_pred HhhhhhhhhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy10418 274 LKEKELGYRNSDVDNLKRQIDRLTSTVRELRRKQRLSQVQVRGLIDERADFLAALQDHQREVAALKQQL 342 (389)
Q Consensus 274 ak~~el~~k~~evEaLq~Q~~RL~~~n~eLRrk~~~~q~Q~r~l~eekadl~a~lq~~~~ei~~L~~~l 342 (389)
....++.....++.+++.+++++..--.+++.+... .|-.+.++|.++++++.....+....+..+
T Consensus 220 ~l~~~~e~l~~~i~~l~~ele~a~~~l~~l~~~~~~---~GG~~~~~r~~Le~ei~~le~e~~e~~~~l 285 (650)
T TIGR03185 220 EQSEKYEDLAQEIAHLRNELEEAQRSLESLEKKFRS---EGGDLFEEREQLERQLKEIEAARKANRAQL 285 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hcchHHHHHHHHHHHHHHHHHHHHHHHHHH
No 67
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=70.98 E-value=97 Score=29.39 Aligned_cols=132 Identities=21% Similarity=0.337 Sum_probs=61.1
Q ss_pred HHhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhhcCCCCCccCC----CCch---hhHHHHHHHHHHHHHhHHH
Q psy10418 199 LHDRNTLKTRLNELEEERQCFKMVNRLQEENKKLSKRLEHEGSSPMKSQQ----LSPE---IDISALQKLRGQVDSLRDQ 271 (389)
Q Consensus 199 L~ERNELKa~vf~LqEEl~~~~~V~qLqeeNk~L~~~ls~~~~~~~~~~e----~~~~---~d~~vm~kLKe~VdkQRde 271 (389)
++.-++|+..++.++.+++-+.. ||+-|..-... +..-+...+ ..|. .=..=+..|++-..+-.+.
T Consensus 11 ~~ki~~L~n~l~elq~~l~~l~~------ENk~Lk~lq~R-q~kAL~k~e~~e~~Lpqll~~h~eEvr~Lr~~LR~~q~~ 83 (194)
T PF15619_consen 11 LHKIKELQNELAELQRKLQELRK------ENKTLKQLQKR-QEKALQKYEDTEAELPQLLQRHNEEVRVLRERLRKSQEQ 83 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHH-HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34457888888888888875543 44433322110 000000000 1121 0011123334444444455
Q ss_pred HHHhhhhhhhhhhhHHHHHHHHHHHHHhhHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q psy10418 272 MRLKEKELGYRNSDVDNLKRQIDRLTSTVRE--LRRKQRLSQVQVRGLIDERADFLAALQDHQREVAALKQQLGLA 345 (389)
Q Consensus 272 iRak~~el~~k~~evEaLq~Q~~RL~~~n~e--LRrk~~~~q~Q~r~l~eekadl~a~lq~~~~ei~~L~~~lg~~ 345 (389)
.|+-.+.+..+..++-.+..++.+|.+...+ |--+ -.|..+=+++.+.+++..+.|..|...+-++
T Consensus 84 ~r~~~~klk~~~~el~k~~~~l~~L~~L~~dknL~eR--------eeL~~kL~~~~~~l~~~~~ki~~Lek~leL~ 151 (194)
T PF15619_consen 84 ERELERKLKDKDEELLKTKDELKHLKKLSEDKNLAER--------EELQRKLSQLEQKLQEKEKKIQELEKQLELE 151 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555666666666666666555442 1111 1223334455555555555555555555433
No 68
>KOG3809|consensus
Probab=69.32 E-value=84 Score=33.93 Aligned_cols=90 Identities=18% Similarity=0.315 Sum_probs=62.7
Q ss_pred hhHHHHHHHHHHHHHhHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHhhH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10418 253 IDISALQKLRGQVDSLRDQMRLKEKELGYRNSDVDNLKRQIDRLTSTVR----ELRRKQRLSQVQVRGLIDERADFLAAL 328 (389)
Q Consensus 253 ~d~~vm~kLKe~VdkQRdeiRak~~el~~k~~evEaLq~Q~~RL~~~n~----eLRrk~~~~q~Q~r~l~eekadl~a~l 328 (389)
..+.-|.+|+++|-..=..+=..-+=+.+.+.||+|||..+++...-|. +|-+.+++--.=.--|--+-|.|++.+
T Consensus 476 a~~~~~~~lr~~~Q~LtkSa~PLgkl~D~i~eD~daMq~EL~mWrse~rq~~~elq~eq~~t~~a~epL~~~la~lq~~I 555 (583)
T KOG3809|consen 476 AEREKMKQLREKLQDLTKSAYPLGKLFDFINEDIDAMQKELEMWRSEQRQNEQELQNEQAATFGASEPLYNILANLQKEI 555 (583)
T ss_pred HHHHHHHHHHHHHHHHHHhhccHHHHHhhhhhhHHHHHHHHHHHHHHHHHhHHHHHhhhhcccccchHHHHHHHHHHHHH
Confidence 3556777787777777777777888899999999999999999887653 333333332222223444566777777
Q ss_pred HHHHHHHHHHHHHh
Q psy10418 329 QDHQREVAALKQQL 342 (389)
Q Consensus 329 q~~~~ei~~L~~~l 342 (389)
.+++.+|...|.++
T Consensus 556 ~d~~e~i~~~r~~I 569 (583)
T KOG3809|consen 556 NDTKEEISKARGRI 569 (583)
T ss_pred HHHHHHHHHHHHHH
Confidence 77777777777665
No 69
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=68.62 E-value=61 Score=26.18 Aligned_cols=63 Identities=17% Similarity=0.281 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHhHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q psy10418 256 SALQKLRGQVDSLRDQMRLKEKELGYRNSDVDNLKRQIDRLTSTVRELRRKQRLSQVQVRGLI 318 (389)
Q Consensus 256 ~vm~kLKe~VdkQRdeiRak~~el~~k~~evEaLq~Q~~RL~~~n~eLRrk~~~~q~Q~r~l~ 318 (389)
+++.+|-..|.+-=|.|.+...++........+|.+...-|..-|.-|+.-+...+..+++|+
T Consensus 4 E~l~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~LL 66 (72)
T PF06005_consen 4 ELLEQLEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLRSLL 66 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555555555555555555555555555555555555555555555544
No 70
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=68.22 E-value=1.4e+02 Score=30.27 Aligned_cols=49 Identities=6% Similarity=0.022 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCccCCCCchHHHHHHH
Q psy10418 91 WKEETQQLVEMVNRLQEENKKLSKRLEHEGSSPMKSQQLSPEIDISVLQ 139 (389)
Q Consensus 91 ~r~E~~eL~~~V~~LqeeN~~L~~~Ls~~~~~~~~~~~~~~e~er~vm~ 139 (389)
|+=-|++|...|..=..--+.+........++.+..-..+++..|.+|.
T Consensus 68 Y~~sC~EL~~~I~egr~~~~~~E~et~~~nPpLF~EY~~a~~d~r~lm~ 116 (312)
T smart00787 68 YQFSCKELKKYISEGRDLFKEIEEETLINNPPLFKEYFSASPDVKLLMD 116 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHcCCHHHHHHHH
Confidence 3445677777776666666666666665555543222233445555554
No 71
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=66.66 E-value=3e+02 Score=33.39 Aligned_cols=32 Identities=13% Similarity=0.269 Sum_probs=21.0
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhH
Q psy10418 192 TAELKEILHDRNTLKTRLNELEEERQCFKMVN 223 (389)
Q Consensus 192 l~ELreVL~ERNELKa~vf~LqEEl~~~~~V~ 223 (389)
+..|.+-+..=..++.++-.+++.+..++.|.
T Consensus 222 i~~l~e~~~~~~~~~~~le~l~~~~~~l~~i~ 253 (1353)
T TIGR02680 222 LTDVADALEQLDEYRDELERLEALERALRNFL 253 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666667777777777777777776554433
No 72
>PRK10884 SH3 domain-containing protein; Provisional
Probab=66.60 E-value=1.1e+02 Score=29.41 Aligned_cols=77 Identities=17% Similarity=0.234 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHhHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10418 255 ISALQKLRGQVDSLRDQMRLKEKELGYRNSDVDNLKRQIDRLTSTVRELRRKQRLSQVQVRGLIDERADFLAALQDHQRE 334 (389)
Q Consensus 255 ~~vm~kLKe~VdkQRdeiRak~~el~~k~~evEaLq~Q~~RL~~~n~eLRrk~~~~q~Q~r~l~eekadl~a~lq~~~~e 334 (389)
+..+-+|+.-+.+-++++...+.+..+. ...|++.+........+|......+..|+..+-.+...++|.+.+.++.
T Consensus 92 ~~rlp~le~el~~l~~~l~~~~~~~~~~---~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~~ 168 (206)
T PRK10884 92 RTRVPDLENQVKTLTDKLNNIDNTWNQR---TAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQRT 168 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556655555555555544443322 2233443334444444444444444555555555555555555555543
No 73
>KOG0963|consensus
Probab=65.23 E-value=2.3e+02 Score=31.66 Aligned_cols=70 Identities=20% Similarity=0.363 Sum_probs=43.3
Q ss_pred HHhhhhhhhhhhhHHHHHHHHHHHHHhhHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy10418 273 RLKEKELGYRNSDVDNLKRQIDRLTSTVRELRRKQR----LSQVQVRGLIDERADFLAALQDHQREVAALKQQLG 343 (389)
Q Consensus 273 Rak~~el~~k~~evEaLq~Q~~RL~~~n~eLRrk~~----~~q~Q~r~l~eekadl~a~lq~~~~ei~~L~~~lg 343 (389)
-+...-|..|-++|-.|...++|+.....++|-+++ .+.+|+.+...+.-++...|+.+ .....++.+|.
T Consensus 281 ~~~~~~L~~kd~~i~~L~~di~~~~~S~~~e~e~~~~qI~~le~~l~~~~~~leel~~kL~~~-sDYeeIK~ELs 354 (629)
T KOG0963|consen 281 DALGSVLNQKDSEIAQLSNDIERLEASLVEEREKHKAQISALEKELKAKISELEELKEKLNSR-SDYEEIKKELS 354 (629)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-ccHHHHHHHHH
Confidence 333333444445555555666666666667776654 57788888888888888888865 44444444443
No 74
>KOG1029|consensus
Probab=65.02 E-value=2.7e+02 Score=32.34 Aligned_cols=116 Identities=19% Similarity=0.364 Sum_probs=60.5
Q ss_pred HHHhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhhcCCCCCccCCCCc-hhhHHHHHHHHHHH-HHhHHHHHHh
Q psy10418 198 ILHDRNTLKTRLNELEEERQCFKMVNRLQEENKKLSKRLEHEGSSPMKSQQLSP-EIDISALQKLRGQV-DSLRDQMRLK 275 (389)
Q Consensus 198 VL~ERNELKa~vf~LqEEl~~~~~V~qLqeeNk~L~~~ls~~~~~~~~~~e~~~-~~d~~vm~kLKe~V-dkQRdeiRak 275 (389)
.+-|+.+|++++..+|+-|.++-. |...|-.++...... +.+... ..+......=|+.+ ..-+|.+-+.
T Consensus 484 ~isei~qlqarikE~q~kl~~l~~------Ekq~l~~qlkq~q~a---~~~~~~~~s~L~aa~~~ke~irq~ikdqldel 554 (1118)
T KOG1029|consen 484 MISEIDQLQARIKELQEKLQKLAP------EKQELNHQLKQKQSA---HKETTQRKSELEAARRKKELIRQAIKDQLDEL 554 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhh------HHHHHHHHHHHhhhh---ccCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 477899999999999999988765 333333333322200 001111 11222222223332 2223333344
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10418 276 EKELGYRNSDVDNLKRQIDRLTSTVRELRRKQRLSQVQVRGLIDERADFLAALQ 329 (389)
Q Consensus 276 ~~el~~k~~evEaLq~Q~~RL~~~n~eLRrk~~~~q~Q~r~l~eekadl~a~lq 329 (389)
.+ +++.--++++=|.....|||--+...+.+.+.+.+-.-|.+...+
T Consensus 555 sk-------E~esk~~eidi~n~qlkelk~~~~~q~lake~~yk~e~d~~ke~e 601 (1118)
T KOG1029|consen 555 SK-------ETESKLNEIDIFNNQLKELKEDVNSQQLAKEELYKNERDKLKEAE 601 (1118)
T ss_pred HH-------HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44 444444444445555567777778888887777765555544433
No 75
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=64.77 E-value=2.6e+02 Score=31.93 Aligned_cols=135 Identities=24% Similarity=0.391 Sum_probs=73.1
Q ss_pred hhHHHhhhhhhHHHHhHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCccCCCCchHHHHHHH
Q psy10418 63 TKLQELGDHISKLEHEKL---EREVEEIEESWKEETQQLVEMVNRLQEENKKLSKRLEHEGSSPMKSQQLSPEIDISVLQ 139 (389)
Q Consensus 63 ~~~e~L~~~~~qle~Ek~---~~Ele~~Ed~~r~E~~eL~~~V~~LqeeN~~L~~~Ls~~~~~~~~~~~~~~e~er~vm~ 139 (389)
+++++|+.++.. ..++ .+-++-+...+++-..+|..-+...+.+...|-..|+....+ +.
T Consensus 405 ~eleeL~~~L~e--~qkll~ekk~~eki~E~lq~~eqel~~llq~~ekev~dLe~~l~~~~~~-----------eq---- 467 (786)
T PF05483_consen 405 VELEELKKILAE--KQKLLDEKKQFEKIAEELQGTEQELTGLLQIREKEVHDLEIQLTTIKES-----------EQ---- 467 (786)
T ss_pred HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHh-----------hH----
Confidence 566777666521 1111 223444555555555555555555555555555555433221 11
Q ss_pred HHHHHHHHHHHHHH---HHHhhhhcccccCCCCCCcccccccccCCCCCCCCcccHHHHHHHHHhhHHHHHHHHHHHHHH
Q psy10418 140 KLRGQVDSLRDQMR---LKEKELGYRNSDVDNSDIPDLSNKAVYDLDDPNRPRFTTAELKEILHDRNTLKTRLNELEEER 216 (389)
Q Consensus 140 kLKe~VdkQRDeiR---ake~eL~~k~~dve~l~~~~L~~~~~~d~~dpnrPrFTl~ELreVL~ERNELKa~vf~LqEEl 216 (389)
..-.+|...+.++- .|.-+|+...... --|-+.+-++.+.....+-.+++.+
T Consensus 468 ~yskQVeeLKtELE~EkLKN~ELt~~~nkL-------------------------slEkk~laQE~~~~~~elKk~qedi 522 (786)
T PF05483_consen 468 HYSKQVEELKTELEQEKLKNTELTVNCNKL-------------------------SLEKKQLAQETSDMALELKKQQEDI 522 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------------HHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 12234455555553 3556666544431 0134556666666666666666666
Q ss_pred H--------hhhhhHHHHHHHHHHhhhhhhc
Q psy10418 217 Q--------CFKMVNRLQEENKKLSKRLEHE 239 (389)
Q Consensus 217 ~--------~~~~V~qLqeeNk~L~~~ls~~ 239 (389)
. .+++|..|.+.|..|...+.+.
T Consensus 523 ~~~k~qee~~~kqie~Lee~~~~Lrneles~ 553 (786)
T PF05483_consen 523 NNSKKQEEKMLKQIENLEETNTQLRNELESV 553 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4 5578888888888888777644
No 76
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=64.03 E-value=46 Score=33.72 Aligned_cols=70 Identities=30% Similarity=0.509 Sum_probs=48.5
Q ss_pred HHHhHHHHHHhhhhhhhhhhhHHHHHHHHHHHHH--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy10418 265 VDSLRDQMRLKEKELGYRNSDVDNLKRQIDRLTS--TVRELRRKQRLSQVQVRGLIDERADFLAALQDHQREVAALKQQL 342 (389)
Q Consensus 265 VdkQRdeiRak~~el~~k~~evEaLq~Q~~RL~~--~n~eLRrk~~~~q~Q~r~l~eekadl~a~lq~~~~ei~~L~~~l 342 (389)
|.-.|-.||--..-|..+-.+|+-|..|+-|... |-+|+.| .+-+-+|.+..+||..|++=+
T Consensus 70 iRHLkakLkes~~~l~dRetEI~eLksQL~RMrEDWIEEECHR----------------VEAQLALKEARkEIkQLkQvi 133 (305)
T PF15290_consen 70 IRHLKAKLKESENRLHDRETEIDELKSQLARMREDWIEEECHR----------------VEAQLALKEARKEIKQLKQVI 133 (305)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666666777788899999999988754 4444433 233446788889999999666
Q ss_pred -----hHHHHhhh
Q psy10418 343 -----GLAEKENE 350 (389)
Q Consensus 343 -----g~~~k~~~ 350 (389)
+|++|+.+
T Consensus 134 eTmrssL~ekDkG 146 (305)
T PF15290_consen 134 ETMRSSLAEKDKG 146 (305)
T ss_pred HHHHhhhchhhhh
Confidence 46777543
No 77
>PF05130 FlgN: FlgN protein; InterPro: IPR007809 Flagella synthesis protein FlgN is an export chaperone involved in flagellar synthesis []. This entry represents a FlgN-like domain, consisting of a 4 long helices bundle, where the last helix is shorter than the three others.; GO: 0009296 flagellum assembly, 0019861 flagellum; PDB: 2FUP_A 3OPC_A.
Probab=62.37 E-value=67 Score=26.80 Aligned_cols=72 Identities=19% Similarity=0.263 Sum_probs=44.3
Q ss_pred hhHHHHHHHHHHHHHhHHHHHHhhhh-hhhhhhhHHHHHHHHHHHHHhhHHHHHHHHHH--HHHHHHHHHHHHHH
Q psy10418 253 IDISALQKLRGQVDSLRDQMRLKEKE-LGYRNSDVDNLKRQIDRLTSTVRELRRKQRLS--QVQVRGLIDERADF 324 (389)
Q Consensus 253 ~d~~vm~kLKe~VdkQRdeiRak~~e-l~~k~~evEaLq~Q~~RL~~~n~eLRrk~~~~--q~Q~r~l~eekadl 324 (389)
.+..++..|.++..++++-|...+.+ |.......+.+-.++..+.+.-..+..+.+.. ..-+..++....++
T Consensus 12 ~~~~~~~~L~~ll~~e~~~l~~~d~~~l~~~~~~k~~l~~~l~~le~~r~~~~~~~~~~~~~~~l~~~~~~~~~l 86 (143)
T PF05130_consen 12 EQIELLQELLELLEEEREALISGDIDELEELVEEKQELLEELRELEKQRQQLLAKLGAEPEEATLSELIEEREEL 86 (143)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--SCHHHHHHHHCCCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccHHHHHhccHHH
Confidence 56789999999999999999988643 33444445566666666655555555555444 33344455433333
No 78
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=62.24 E-value=1.9e+02 Score=29.66 Aligned_cols=182 Identities=23% Similarity=0.349 Sum_probs=107.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccCCCCCCcc
Q psy10418 94 ETQQLVEMVNRLQEENKKLSKRLEHEGSSPMKSQQLSPEIDISVLQKLRGQVDSLRDQMRLKEKELGYRNSDVDNSDIPD 173 (389)
Q Consensus 94 E~~eL~~~V~~LqeeN~~L~~~Ls~~~~~~~~~~~~~~e~er~vm~kLKe~VdkQRDeiRake~eL~~k~~dve~l~~~~ 173 (389)
-++.|...+.+|+.+.-.|...|...+ -.++-+|.-.+++.+.+.-++.
T Consensus 107 ltn~L~rkl~qLr~EK~~lE~~Le~Eq--------------E~~V~kL~k~i~~Le~e~~~~q----------------- 155 (310)
T PF09755_consen 107 LTNDLSRKLNQLRQEKVELENQLEQEQ--------------EYLVNKLQKKIERLEKEKSAKQ----------------- 155 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhH--------------HHHHHHHHHHHHHHHHHHHHhH-----------------
Confidence 457788888888888777776665322 1344556556655544442222
Q ss_pred cccccccCCCCCCCCcccHHHHHHHHHhhHHHHHHHHHHHHHH--HhhhhhHHHHHHHHHHhhhhhhcCCCCCccC----
Q psy10418 174 LSNKAVYDLDDPNRPRFTTAELKEILHDRNTLKTRLNELEEER--QCFKMVNRLQEENKKLSKRLEHEGSSPMKSQ---- 247 (389)
Q Consensus 174 L~~~~~~d~~dpnrPrFTl~ELreVL~ERNELKa~vf~LqEEl--~~~~~V~qLqeeNk~L~~~ls~~~~~~~~~~---- 247 (389)
.+|..+-.|+.+|...+--=||-| .+.+++.+|-.+++.|...|......|+...
T Consensus 156 -------------------~~le~Lr~EKVdlEn~LE~EQE~lvN~L~Kqm~~l~~eKr~Lq~~l~~~~s~~~s~~d~~~ 216 (310)
T PF09755_consen 156 -------------------EELERLRREKVDLENTLEQEQEALVNRLWKQMDKLEAEKRRLQEKLEQPVSAPPSPRDTVN 216 (310)
T ss_pred -------------------HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCcchHHh
Confidence 234455567777665555555555 3668999999999999999986543322211
Q ss_pred ----CCCchhhHHHHHHHHHHHHHhHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy10418 248 ----QLSPEIDISALQKLRGQVDSLRDQMRLKEKELGYRNSDVDNLKRQIDRLTSTVRELRRKQRLSQVQVRGLIDERAD 323 (389)
Q Consensus 248 ----e~~~~~d~~vm~kLKe~VdkQRdeiRak~~el~~k~~evEaLq~Q~~RL~~~n~eLRrk~~~~q~Q~r~l~eekad 323 (389)
.+.++.=-.-+..|+.=|+++|..|-+-.++-..+..- .-.-..-+.-=|.-|+||+..-....-+||..-++
T Consensus 217 ~~~~~Dt~e~~~shI~~Lr~EV~RLR~qL~~sq~e~~~k~~~---~~~eek~ireEN~rLqr~L~~E~erreal~R~lse 293 (310)
T PF09755_consen 217 VSEENDTAERLSSHIRSLRQEVSRLRQQLAASQQEHSEKMAQ---YLQEEKEIREENRRLQRKLQREVERREALCRHLSE 293 (310)
T ss_pred hcccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12223222335567776777777777666655444332 22222233445666777777766777777766666
Q ss_pred HHHHH
Q psy10418 324 FLAAL 328 (389)
Q Consensus 324 l~a~l 328 (389)
-+..+
T Consensus 294 sEssl 298 (310)
T PF09755_consen 294 SESSL 298 (310)
T ss_pred HHHHH
Confidence 55544
No 79
>PRK09039 hypothetical protein; Validated
Probab=62.23 E-value=1.9e+02 Score=29.59 Aligned_cols=78 Identities=18% Similarity=0.288 Sum_probs=32.9
Q ss_pred HHHHHHhHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10418 262 RGQVDSLRDQMRLKEKELGYRNSDVDNLKRQIDRLTSTVRELRRKQRLSQVQVRGLIDERADFLAALQDHQREVAALKQQ 341 (389)
Q Consensus 262 Ke~VdkQRdeiRak~~el~~k~~evEaLq~Q~~RL~~~n~eLRrk~~~~q~Q~r~l~eekadl~a~lq~~~~ei~~L~~~ 341 (389)
....+.++..+-...+++...+.+|+||..|+.+|..--.+.-.+-+-.+.|+..| +..|.+.+..+-+++..++..
T Consensus 122 ~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L---~~~L~~a~~~~~~~l~~~~~~ 198 (343)
T PRK09039 122 AQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADL---GRRLNVALAQRVQELNRYRSE 198 (343)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhHHH
Confidence 34444444444444444444444444444444444444444444443344433333 233333333334444444433
Q ss_pred h
Q psy10418 342 L 342 (389)
Q Consensus 342 l 342 (389)
+
T Consensus 199 ~ 199 (343)
T PRK09039 199 F 199 (343)
T ss_pred H
Confidence 3
No 80
>KOG4643|consensus
Probab=61.89 E-value=3.4e+02 Score=32.36 Aligned_cols=33 Identities=21% Similarity=0.249 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCC
Q psy10418 89 ESWKEETQQLVEMVNRLQEENKKLSKRLEHEGS 121 (389)
Q Consensus 89 d~~r~E~~eL~~~V~~LqeeN~~L~~~Ls~~~~ 121 (389)
+-++.+.-..+.+++.|++||..|...-...+.
T Consensus 311 ~dm~~erdtdr~kteeL~eEnstLq~q~eqL~~ 343 (1195)
T KOG4643|consen 311 DDMRSERDTDRHKTEELHEENSTLQVQKEQLDG 343 (1195)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 346667777888888888888888776554443
No 81
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=61.63 E-value=2.9e+02 Score=31.50 Aligned_cols=47 Identities=13% Similarity=0.188 Sum_probs=30.9
Q ss_pred hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10418 284 SDVDNLKRQIDRLTSTVRELRRKQRLSQVQVRGLIDERADFLAALQD 330 (389)
Q Consensus 284 ~evEaLq~Q~~RL~~~n~eLRrk~~~~q~Q~r~l~eekadl~a~lq~ 330 (389)
.-+..||..+.|-...+.-+..+.+....|++.+.+-=.-+...|+.
T Consensus 373 v~sktLQ~ELsrAqea~~~lqqq~~~aee~Lk~v~eav~S~q~~L~s 419 (739)
T PF07111_consen 373 VGSKTLQAELSRAQEARRRLQQQTASAEEQLKLVSEAVSSSQQWLES 419 (739)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33456777777777776667777777777777777665555555544
No 82
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=61.47 E-value=1.2e+02 Score=26.88 Aligned_cols=48 Identities=21% Similarity=0.407 Sum_probs=31.0
Q ss_pred HHHHHhHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHhhHHHHHHHHHH
Q psy10418 263 GQVDSLRDQMRLKEKELGYRNSDVDNLKRQIDRLTSTVRELRRKQRLS 310 (389)
Q Consensus 263 e~VdkQRdeiRak~~el~~k~~evEaLq~Q~~RL~~~n~eLRrk~~~~ 310 (389)
..+..+||.+++---.+...+.++.+...++.-|..-..+|..|+..+
T Consensus 40 ~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ry~t~ 87 (120)
T PF12325_consen 40 ARLEAERDELREEIVKLMEENEELRALKKEVEELEQELEELQQRYQTL 87 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566777766666666667677777676666666666666666543
No 83
>PHA02562 46 endonuclease subunit; Provisional
Probab=61.41 E-value=2.2e+02 Score=30.04 Aligned_cols=191 Identities=12% Similarity=0.174 Sum_probs=110.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccCC
Q psy10418 88 EESWKEETQQLVEMVNRLQEENKKLSKRLEHEGSSPMKSQQLSPEIDISVLQKLRGQVDSLRDQMRLKEKELGYRNSDVD 167 (389)
Q Consensus 88 Ed~~r~E~~eL~~~V~~LqeeN~~L~~~Ls~~~~~~~~~~~~~~e~er~vm~kLKe~VdkQRDeiRake~eL~~k~~dve 167 (389)
.+.++.+...+......++.+...|...+.....+. +.=.+.|.+++..+.+.+..+-..+..+..-. .
T Consensus 215 i~~l~~e~~~l~~~~~~l~~~l~~l~~~i~~l~~~i--------~~~~~~L~~l~~~~~~~~~~l~~~~~~~~~~~---~ 283 (562)
T PHA02562 215 IARKQNKYDELVEEAKTIKAEIEELTDELLNLVMDI--------EDPSAALNKLNTAAAKIKSKIEQFQKVIKMYE---K 283 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---C
Confidence 444555666666666666666666666665443221 00124577777777777777665544432111 1
Q ss_pred CCCCcccccccccCCCCCCCCcccHHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhhcCCCCCccC
Q psy10418 168 NSDIPDLSNKAVYDLDDPNRPRFTTAELKEILHDRNTLKTRLNELEEERQCFKMVNRLQEENKKLSKRLEHEGSSPMKSQ 247 (389)
Q Consensus 168 ~l~~~~L~~~~~~d~~dpnrPrFTl~ELreVL~ERNELKa~vf~LqEEl~~~~~V~qLqeeNk~L~~~ls~~~~~~~~~~ 247 (389)
...|| ++.....+ . ...+-.+-..++.|..++-.+++.+..++...+
T Consensus 284 ~~~Cp-~C~~~~~~----~-----~~~~~~l~d~i~~l~~~l~~l~~~i~~~~~~~~----------------------- 330 (562)
T PHA02562 284 GGVCP-TCTQQISE----G-----PDRITKIKDKLKELQHSLEKLDTAIDELEEIMD----------------------- 330 (562)
T ss_pred CCCCC-CCCCcCCC----c-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------
Confidence 12233 11111111 1 344555555777777777777777776654111
Q ss_pred CCCchhhHHHHHHHHHHHHHhHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10418 248 QLSPEIDISALQKLRGQVDSLRDQMRLKEKELGYRNSDVDNLKRQIDRLTSTVRELRRKQRLSQVQVRGLIDERADFLAA 327 (389)
Q Consensus 248 e~~~~~d~~vm~kLKe~VdkQRdeiRak~~el~~k~~evEaLq~Q~~RL~~~n~eLRrk~~~~q~Q~r~l~eekadl~a~ 327 (389)
-...+...+..-++.|+.....+.........++..+++|...+.++=.+.+.+..++..+-.+++++...
T Consensus 331 ---------~~~~~~~~i~el~~~i~~~~~~i~~~~~~~~~l~~ei~~l~~~~~~~~~~l~~l~~~l~~~~~~~~~~~ke 401 (562)
T PHA02562 331 ---------EFNEQSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAEFVDNAEELAKLQDELDKIVKTKSELVKE 401 (562)
T ss_pred ---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 13333444455566666666666666666777777777777777777777777888888888888877766
Q ss_pred HHHH
Q psy10418 328 LQDH 331 (389)
Q Consensus 328 lq~~ 331 (389)
....
T Consensus 402 ~~~~ 405 (562)
T PHA02562 402 KYHR 405 (562)
T ss_pred HHHH
Confidence 6543
No 84
>PRK10884 SH3 domain-containing protein; Provisional
Probab=61.23 E-value=1e+02 Score=29.56 Aligned_cols=71 Identities=20% Similarity=0.255 Sum_probs=43.7
Q ss_pred HHHHHhhhhhhhhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy10418 270 DQMRLKEKELGYRNSDVDNLKRQIDRLTSTVRELRRKQRLSQVQVRGLIDERADFLAALQDHQREVAALKQQLG 343 (389)
Q Consensus 270 deiRak~~el~~k~~evEaLq~Q~~RL~~~n~eLRrk~~~~q~Q~r~l~eekadl~a~lq~~~~ei~~L~~~lg 343 (389)
+.+-+...++.........+..+ +....+++..+.+....++..|-++-+.|..+++..+.++..|..++.
T Consensus 93 ~rlp~le~el~~l~~~l~~~~~~---~~~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~ 163 (206)
T PRK10884 93 TRVPDLENQVKTLTDKLNNIDNT---WNQRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLD 163 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444433 335666777777777777777777777777777777777777666654
No 85
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=61.05 E-value=1.4e+02 Score=33.49 Aligned_cols=91 Identities=20% Similarity=0.322 Sum_probs=68.1
Q ss_pred hHHHHHHHHHHHHHhHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10418 254 DISALQKLRGQVDSLRDQMRLKEKELGYRNSDVDNLKRQIDRLTSTVRELRRKQRLSQVQVRGLIDERADFLAALQDHQR 333 (389)
Q Consensus 254 d~~vm~kLKe~VdkQRdeiRak~~el~~k~~evEaLq~Q~~RL~~~n~eLRrk~~~~q~Q~r~l~eekadl~a~lq~~~~ 333 (389)
....|.++..+|.++..+++....++.....+++.|-.++++|.+-...=-++- .-++.+-.+=..|+..|+.+.+
T Consensus 420 ~~~~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~~~~~~----rei~~~~~~I~~L~~~L~e~~~ 495 (652)
T COG2433 420 YEKRIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRREVRDKVRKD----REIRARDRRIERLEKELEEKKK 495 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh----HHHHHHHHHHHHHHHHHHHHHH
Confidence 456788999999999999999999999999999999999988876443211111 1233344455678888899999
Q ss_pred HHHHHHHHhhHHHHh
Q psy10418 334 EVAALKQQLGLAEKE 348 (389)
Q Consensus 334 ei~~L~~~lg~~~k~ 348 (389)
.+..|..+|....|.
T Consensus 496 ~ve~L~~~l~~l~k~ 510 (652)
T COG2433 496 RVEELERKLAELRKM 510 (652)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999888755544
No 86
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=60.70 E-value=28 Score=27.47 Aligned_cols=32 Identities=34% Similarity=0.390 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcC
Q psy10418 89 ESWKEETQQLVEMVNRLQEENKKLSKRLEHEG 120 (389)
Q Consensus 89 d~~r~E~~eL~~~V~~LqeeN~~L~~~Ls~~~ 120 (389)
+.++..+.+|..++.+|+.||..|....+...
T Consensus 17 evLK~~I~eL~~~n~~Le~EN~~Lk~~~~pe~ 48 (59)
T PF01166_consen 17 EVLKEQIAELEERNSQLEEENNLLKQNASPEQ 48 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH
Confidence 45667788999999999999999988776443
No 87
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=60.34 E-value=2.1e+02 Score=29.38 Aligned_cols=110 Identities=25% Similarity=0.302 Sum_probs=75.2
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHhhhhhhcCCCCCccCCCCchhhHHHHHHHHHHHHHhHHHHHHhhhhhhhhhhhHHHH
Q psy10418 210 NELEEERQCFKMVNRLQEENKKLSKRLEHEGSSPMKSQQLSPEIDISALQKLRGQVDSLRDQMRLKEKELGYRNSDVDNL 289 (389)
Q Consensus 210 f~LqEEl~~~~~V~qLqeeNk~L~~~ls~~~~~~~~~~e~~~~~d~~vm~kLKe~VdkQRdeiRak~~el~~k~~evEaL 289 (389)
|-|++-|.+ -|+.|+..|.-|+..||.+. .-.-.|+.-.-.-||.||-|.--|.....|...-
T Consensus 129 ~~lqdkmn~--d~S~lkd~ne~LsQqLskae---------------sK~nsLe~elh~trdaLrEKtL~lE~~QrdL~Qt 191 (305)
T PF14915_consen 129 VRLQDKMNS--DVSNLKDNNEILSQQLSKAE---------------SKFNSLEIELHHTRDALREKTLALESVQRDLSQT 191 (305)
T ss_pred HHHHHHhcc--hHHhHHHHhHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444443 25678889999999999875 4455677777778999998888888888888777
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy10418 290 KRQIDRLTSTVRELRRKQRLSQVQVRGLIDERADFLAALQDHQREVAALKQQLG 343 (389)
Q Consensus 290 q~Q~~RL~~~n~eLRrk~~~~q~Q~r~l~eekadl~a~lq~~~~ei~~L~~~lg 343 (389)
|.|+--+..|.. .-+.++-..+-..--++-.|...+.+..-|+++|.
T Consensus 192 q~q~KE~e~m~q-------ne~~kv~k~~~Kqes~eERL~QlqsEN~LLrQQLd 238 (305)
T PF14915_consen 192 QCQIKEIEHMYQ-------NEQDKVNKYIGKQESLEERLSQLQSENMLLRQQLD 238 (305)
T ss_pred HHHHHHHHHHHH-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777765555543 34445555555555566666666667777777775
No 88
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=59.80 E-value=96 Score=35.02 Aligned_cols=105 Identities=18% Similarity=0.324 Sum_probs=48.2
Q ss_pred hHHHHHHHHHHHHHHH-hhhhhHHHHHHHHHHhhhhhhcCCCCCccCCCCchhhHHHHHHHHHHHHHhHHHHHHhhhhhh
Q psy10418 202 RNTLKTRLNELEEERQ-CFKMVNRLQEENKKLSKRLEHEGSSPMKSQQLSPEIDISALQKLRGQVDSLRDQMRLKEKELG 280 (389)
Q Consensus 202 RNELKa~vf~LqEEl~-~~~~V~qLqeeNk~L~~~ls~~~~~~~~~~e~~~~~d~~vm~kLKe~VdkQRdeiRak~~el~ 280 (389)
|+++..++-.|+.++. .++.+.+++++.+.+...-..-. . ..+.+.+.-..++++++.+.. .+.++...|+
T Consensus 560 r~ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~La-e---R~e~a~d~Qe~L~~R~~~vl~----~l~~~~P~LS 631 (717)
T PF10168_consen 560 REEIQRRVKLLKQQKEQQLKELQELQEERKSLRESAEKLA-E---RYEEAKDKQEKLMKRVDRVLQ----LLNSQLPVLS 631 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H---HHHHHHHHHHHHHHHHHHHHH----HHhccCCCCC
Confidence 5666666666666663 44555555555444432221111 0 011111222234444443332 1222222222
Q ss_pred h----hhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q psy10418 281 Y----RNSDVDNLKRQIDRLTSTVRELRRKQRLSQVQV 314 (389)
Q Consensus 281 ~----k~~evEaLq~Q~~RL~~~n~eLRrk~~~~q~Q~ 314 (389)
. -.+|++.+..+++.|......++.|....+.|+
T Consensus 632 ~AEr~~~~EL~~~~~~l~~l~~si~~lk~k~~~Q~~~i 669 (717)
T PF10168_consen 632 EAEREFKKELERMKDQLQDLKASIEQLKKKLDYQQRQI 669 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 223466667777777766667776666544443
No 89
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=59.24 E-value=1.8e+02 Score=28.37 Aligned_cols=23 Identities=26% Similarity=0.424 Sum_probs=16.3
Q ss_pred HHHhhHHHHHHHHHHHHHHHhhh
Q psy10418 198 ILHDRNTLKTRLNELEEERQCFK 220 (389)
Q Consensus 198 VL~ERNELKa~vf~LqEEl~~~~ 220 (389)
+-.++.+|-.+++-+++++.-.+
T Consensus 3 aEr~k~Ele~rL~q~eee~~~a~ 25 (246)
T PF00769_consen 3 AEREKQELEERLRQMEEEMRRAQ 25 (246)
T ss_dssp HHHHCHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Confidence 34567788888888888776554
No 90
>PF05812 Herpes_BLRF2: Herpesvirus BLRF2 protein; InterPro: IPR008642 This family consists of several herpes virus BLRF2 tegument proteins.; PDB: 2OA5_B 2H3R_D.
Probab=58.92 E-value=20 Score=31.82 Aligned_cols=45 Identities=20% Similarity=0.271 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhcCCCC-CccCCCCchHHHHHHH
Q psy10418 95 TQQLVEMVNRLQEENKKLSKRLEHEGSSP-MKSQQLSPEIDISVLQ 139 (389)
Q Consensus 95 ~~eL~~~V~~LqeeN~~L~~~Ls~~~~~~-~~~~~~~~e~er~vm~ 139 (389)
..+|...+++|+-||+.|...+....++. .+...--+..++++|.
T Consensus 5 ~EeLaaeL~kLqmENk~LKkkl~~~~~p~~~p~~~~LTp~qKe~~I 50 (118)
T PF05812_consen 5 MEELAAELQKLQMENKALKKKLRQSVGPGPSPDDEVLTPAQKEAMI 50 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTT---S-TT--B--HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCccccChHHHHHHH
Confidence 35788999999999999999999877531 1222222344666553
No 91
>KOG0977|consensus
Probab=58.79 E-value=2.9e+02 Score=30.55 Aligned_cols=118 Identities=23% Similarity=0.281 Sum_probs=90.9
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhhcCCCCCccCCCCchhhHHHHHHHHHHHHHhHHHHH
Q psy10418 194 ELKEILHDRNTLKTRLNELEEERQCFKMVNRLQEENKKLSKRLEHEGSSPMKSQQLSPEIDISALQKLRGQVDSLRDQMR 273 (389)
Q Consensus 194 ELreVL~ERNELKa~vf~LqEEl~~~~~V~qLqeeNk~L~~~ls~~~~~~~~~~e~~~~~d~~vm~kLKe~VdkQRdeiR 273 (389)
-|.+.--+|-++...+--|++|+..|+. ++.+...... .-.+-++.+.+-|-
T Consensus 100 ~l~e~~~~ra~~e~ei~kl~~e~~elr~---------~~~~~~k~~~-------------------~~re~~~~~~~~l~ 151 (546)
T KOG0977|consen 100 LLDETARERAKLEIEITKLREELKELRK---------KLEKAEKERR-------------------GAREKLDDYLSRLS 151 (546)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHH---------HHHHHHHHHh-------------------hhHHHHHHHhhhhh
Confidence 5667777889999999999999888874 2222222111 11344566677777
Q ss_pred HhhhhhhhhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10418 274 LKEKELGYRNSDVDNLKRQIDRLTSTVRELRRKQRLSQVQVRGLIDERADFLAALQDHQREVAALK 339 (389)
Q Consensus 274 ak~~el~~k~~evEaLq~Q~~RL~~~n~eLRrk~~~~q~Q~r~l~eekadl~a~lq~~~~ei~~L~ 339 (389)
...-++..-...+.+|-..+.||.+-|.=|+.-+..+..|+-.-+=-|.|++...|+.-++|.-+.
T Consensus 152 ~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ld~Etllr~d~~n~~q~Lleel~f~~ 217 (546)
T KOG0977|consen 152 ELEAEINTLKRRIKALEDELKRLKAENSRLREELARARKQLDDETLLRVDLQNRVQTLLEELAFLK 217 (546)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 888888888889999999999999999999999999988888888888888888888888877776
No 92
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=58.76 E-value=1.2e+02 Score=26.59 Aligned_cols=63 Identities=17% Similarity=0.194 Sum_probs=48.9
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10418 277 KELGYRNSDVDNLKRQIDRLTSTVRELRRKQRLSQVQVRGLIDERADFLAALQDHQREVAALK 339 (389)
Q Consensus 277 ~el~~k~~evEaLq~Q~~RL~~~n~eLRrk~~~~q~Q~r~l~eekadl~a~lq~~~~ei~~L~ 339 (389)
+.|......+|....-.+.|.+-..+|+--+..+++|.-+...+.++|+|.+-+.-+.+..-+
T Consensus 16 n~La~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~le~eK 78 (107)
T PF09304_consen 16 NRLASLERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARRNLEDEK 78 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666777777778888888888888888888888888888888888887777665543
No 93
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=57.41 E-value=1.7e+02 Score=28.24 Aligned_cols=68 Identities=13% Similarity=0.229 Sum_probs=48.5
Q ss_pred HHHHHHhHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10418 262 RGQVDSLRDQMRLKEKELGYRNSDVDNLKRQIDRLTSTVRELRRKQRLSQVQVRGLIDERADFLAALQ 329 (389)
Q Consensus 262 Ke~VdkQRdeiRak~~el~~k~~evEaLq~Q~~RL~~~n~eLRrk~~~~q~Q~r~l~eekadl~a~lq 329 (389)
...+|+--++-.....++.....+++.|+.+++++.+....++.+..-++.|+..+-.-+.++..-+.
T Consensus 41 Q~~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p~m~ 108 (251)
T PF11932_consen 41 QKRIDQWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQELVPLME 108 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555566777777788888888888888888888888888888887777776665444
No 94
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=57.11 E-value=1.4e+02 Score=26.33 Aligned_cols=45 Identities=27% Similarity=0.415 Sum_probs=26.8
Q ss_pred ccHHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhh
Q psy10418 190 FTTAELKEILHDRNTLKTRLNELEEERQCFKMVNRLQEENKKLSK 234 (389)
Q Consensus 190 FTl~ELreVL~ERNELKa~vf~LqEEl~~~~~V~qLqeeNk~L~~ 234 (389)
.|+.||.++|+.-..+.+=|..+-.=-.....+..+..+|..|..
T Consensus 4 lS~~eL~~Ll~d~~~l~~~v~~l~~~~~~~~~~~~l~~~n~~lAe 48 (150)
T PF07200_consen 4 LSTEELQELLSDEEKLDAFVKSLPQVQELQQEREELLAENEELAE 48 (150)
T ss_dssp -TTHHHHHHHHH-HHHHHHGGGGS--HHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHcCHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 578899999999888888666554433344444444455555553
No 95
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=56.95 E-value=1.8e+02 Score=27.59 Aligned_cols=71 Identities=15% Similarity=0.301 Sum_probs=37.4
Q ss_pred HHHHHHHHhHHHHHHhhhhhhhhhhhHHHHHHHHHHH---HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10418 260 KLRGQVDSLRDQMRLKEKELGYRNSDVDNLKRQIDRL---TSTVRELRRKQRLSQVQVRGLIDERADFLAALQD 330 (389)
Q Consensus 260 kLKe~VdkQRdeiRak~~el~~k~~evEaLq~Q~~RL---~~~n~eLRrk~~~~q~Q~r~l~eekadl~a~lq~ 330 (389)
+|.+-+.+-+.+.....++|....+|--+|+.--.|+ .+--.+|+.-+.++..+...+..+|-+|...+..
T Consensus 59 ~L~epL~~a~~e~~eL~k~L~~y~kdK~~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~ 132 (201)
T PF13851_consen 59 RLSEPLKKAEEEVEELRKQLKNYEKDKQSLQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFES 132 (201)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444455555555544443333333 4444555666667777777777777666554443
No 96
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=56.52 E-value=1.6e+02 Score=26.82 Aligned_cols=18 Identities=28% Similarity=0.499 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHhhh
Q psy10418 203 NTLKTRLNELEEERQCFK 220 (389)
Q Consensus 203 NELKa~vf~LqEEl~~~~ 220 (389)
.+++.++..+++|+..++
T Consensus 84 ~~~~~~l~~l~~el~~l~ 101 (191)
T PF04156_consen 84 SELQQQLQQLQEELDQLQ 101 (191)
T ss_pred HhHHHHHHHHHHHHHHHH
Confidence 344445555555554443
No 97
>KOG4674|consensus
Probab=55.86 E-value=5.2e+02 Score=32.66 Aligned_cols=250 Identities=18% Similarity=0.265 Sum_probs=122.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCC----ccCCCCchHHHHHHHHH---HHHHHHHHHHHH
Q psy10418 81 EREVEEIEESWKEETQQLVEMVNRLQEENKKLSKRLEHEGSSPM----KSQQLSPEIDISVLQKL---RGQVDSLRDQMR 153 (389)
Q Consensus 81 ~~Ele~~Ed~~r~E~~eL~~~V~~LqeeN~~L~~~Ls~~~~~~~----~~~~~~~e~er~vm~kL---Ke~VdkQRDeiR 153 (389)
...|..-++.+..+...+.+++..|...|+-|+.++...+.... +....+-..=..|+.-| |+-++-..+-++
T Consensus 1094 ~~~w~E~~~~Leqe~~~~~~~~~~L~~qNslLh~qie~~s~~~~~~n~S~~~~g~sdL~~iv~~LR~Ekei~~tk~~~lk 1173 (1822)
T KOG4674|consen 1094 ERDWSEKEDALEQEVNELKKRIESLEKQNSLLHDQFEELSQQSAVSNLSAMLLGLSDLQNIVSFLRKEKEIAETKLDTLK 1173 (1822)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccccccchHHHHHHHHHHHhHHHHHhhhHHHHH
Confidence 44566666777888888999999999999999999886654421 11111101112233333 333444444333
Q ss_pred HHHhhhhccc----ccCCCCCCcccccccccCCCCCCCCcccHHH---HHHHHHhhHHHHHHHHHHHHHHH--------h
Q psy10418 154 LKEKELGYRN----SDVDNSDIPDLSNKAVYDLDDPNRPRFTTAE---LKEILHDRNTLKTRLNELEEERQ--------C 218 (389)
Q Consensus 154 ake~eL~~k~----~dve~l~~~~L~~~~~~d~~dpnrPrFTl~E---LreVL~ERNELKa~vf~LqEEl~--------~ 218 (389)
+--.-|..+. .+++.++.- |.... .-++.--.|.++ +-..+.+=|.|...=+.|.+++. +
T Consensus 1174 ~e~~~L~qq~~~~~k~i~dL~~s-L~~~r----~~~q~~a~s~~e~~~i~~~v~~vNll~EsN~~LRee~~~~~~k~qEl 1248 (1822)
T KOG4674|consen 1174 RENARLKQQVASLNRTIDDLQRS-LTAER----ASSQKSAVSDDEHKEILEKVEEVNLLRESNKVLREENEANLEKIQEL 1248 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHH----HhhccchhhhhhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 3221121111 111111000 00000 000000122333 33344555666666667776663 3
Q ss_pred hhhhHHHHHHHHHHhhhhhhcCCCCCccCCCCchhhHHHHHHHHHHHH---HhHHHHHHh-----hhhhhhhhhhHHHHH
Q psy10418 219 FKMVNRLQEENKKLSKRLEHEGSSPMKSQQLSPEIDISALQKLRGQVD---SLRDQMRLK-----EKELGYRNSDVDNLK 290 (389)
Q Consensus 219 ~~~V~qLqeeNk~L~~~ls~~~~~~~~~~e~~~~~d~~vm~kLKe~Vd---kQRdeiRak-----~~el~~k~~evEaLq 290 (389)
+..|..|..+...|...+.... ..-+ .--.=|.+|++-++ ++++.|.-+ -.++.-..++|.+|.
T Consensus 1249 ~~~i~kl~~el~plq~~l~el~-----~e~~---~~~ael~~l~~e~~~wK~R~q~L~~k~k~~d~~~~~kL~~ei~~Lk 1320 (1822)
T KOG4674|consen 1249 RDKIEKLNFELAPLQNELKELK-----AELQ---EKVAELKKLEEENDRWKQRNQDLLEKYKDSDKNDYEKLKSEISRLK 1320 (1822)
T ss_pred HHHHHHHHhhHhhHHHHHHHHH-----HHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHH
Confidence 3444444333333322222111 0001 11144667777775 233444444 223333334556666
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy10418 291 RQIDRLTSTVRELRRKQRLSQVQVRGLIDERADFLAALQDHQREVAALKQQLG 343 (389)
Q Consensus 291 ~Q~~RL~~~n~eLRrk~~~~q~Q~r~l~eekadl~a~lq~~~~ei~~L~~~lg 343 (389)
.-+.=..+.++||--+..-+|.+++..++.-.--.+.+..+-.++..+..+|-
T Consensus 1321 ~el~~ke~~~~el~~~~~~~q~~~k~qld~l~~e~~~lt~~~~ql~~~~~rL~ 1373 (1822)
T KOG4674|consen 1321 EELEEKENLIAELKKELNRLQEKIKKQLDELNNEKANLTKELEQLEDLKTRLA 1373 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666667888888888888866666555555556666666666666666665
No 98
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=55.80 E-value=3.3e+02 Score=30.28 Aligned_cols=101 Identities=18% Similarity=0.279 Sum_probs=66.4
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHhh-hhhHHHHHHHHHHhhhhhhcCCCCCccCCCCchhhHHHHHHHHHHHHHhHHHHH
Q psy10418 195 LKEILHDRNTLKTRLNELEEERQCF-KMVNRLQEENKKLSKRLEHEGSSPMKSQQLSPEIDISALQKLRGQVDSLRDQMR 273 (389)
Q Consensus 195 LreVL~ERNELKa~vf~LqEEl~~~-~~V~qLqeeNk~L~~~ls~~~~~~~~~~e~~~~~d~~vm~kLKe~VdkQRdeiR 273 (389)
.+..+++=-+++...-.+.+|+... ....+|..++..+-+..+. +.+-+-+|. +-.-|.||+.+|-
T Consensus 442 ~~~~~~~ik~~r~~~k~~~~e~~~Kee~~~qL~~e~e~~~k~~~R------------s~Yt~RIlE-Iv~NI~KQk~eI~ 508 (594)
T PF05667_consen 442 SKQKLQEIKELREEIKEIEEEIRQKEELYKQLVKELEKLPKDVNR------------SAYTRRILE-IVKNIRKQKEEIE 508 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCH------------HHHHHHHHH-HHHhHHHHHHHHH
Confidence 3444555555666666666666543 4445555565555443222 223333332 2334689999999
Q ss_pred HhhhhhhhhhhhHHHHHHHHHHHHHhhHHHHHHHH
Q psy10418 274 LKEKELGYRNSDVDNLKRQIDRLTSTVRELRRKQR 308 (389)
Q Consensus 274 ak~~el~~k~~evEaLq~Q~~RL~~~n~eLRrk~~ 308 (389)
-.-.+......+|..++.+++|==.+..|+--|-+
T Consensus 509 KIl~DTr~lQkeiN~l~gkL~RtF~v~dElifrdA 543 (594)
T PF05667_consen 509 KILSDTRELQKEINSLTGKLDRTFTVTDELIFRDA 543 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Confidence 99999999999999999999998888888765544
No 99
>PRK02224 chromosome segregation protein; Provisional
Probab=55.54 E-value=3.5e+02 Score=30.51 Aligned_cols=34 Identities=15% Similarity=0.249 Sum_probs=21.8
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHhhhhhHHHHH
Q psy10418 194 ELKEILHDRNTLKTRLNELEEERQCFKMVNRLQE 227 (389)
Q Consensus 194 ELreVL~ERNELKa~vf~LqEEl~~~~~V~qLqe 227 (389)
.+..+-.+.++|...+-.++.++..++.....+.
T Consensus 476 ~~~~~~~~~~~le~~l~~~~~~~e~l~~~~~~~~ 509 (880)
T PRK02224 476 RVEELEAELEDLEEEVEEVEERLERAEDLVEAED 509 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555678888888888877776655444333
No 100
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=54.91 E-value=2.9e+02 Score=29.42 Aligned_cols=15 Identities=27% Similarity=0.304 Sum_probs=6.5
Q ss_pred HHHHHHHHHHhHHHH
Q psy10418 258 LQKLRGQVDSLRDQM 272 (389)
Q Consensus 258 m~kLKe~VdkQRdei 272 (389)
--|.-+..++-|+.|
T Consensus 280 ~tKveelar~Lr~~I 294 (442)
T PF06637_consen 280 TTKVEELARSLRAGI 294 (442)
T ss_pred HHHHHHHHHHHhhhH
Confidence 334444444444444
No 101
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=54.86 E-value=90 Score=26.40 Aligned_cols=55 Identities=24% Similarity=0.457 Sum_probs=39.2
Q ss_pred hHHHhhhhhhHHHHhHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q psy10418 64 KLQELGDHISKLEHEKLEREVEE----IEESWKEETQQLVEMVNRLQEENKKLSKRLEH 118 (389)
Q Consensus 64 ~~e~L~~~~~qle~Ek~~~Ele~----~Ed~~r~E~~eL~~~V~~LqeeN~~L~~~Ls~ 118 (389)
+++.+-.++--+-..|++..+-. +|..|...+++|..++..|..+|.+|...+..
T Consensus 16 ~ve~vA~eLh~~YssKHE~KV~~LKksYe~rwek~v~~L~~e~~~l~~E~e~L~~~l~~ 74 (87)
T PF12709_consen 16 AVEKVARELHALYSSKHETKVKALKKSYEARWEKKVDELENENKALKRENEQLKKKLDT 74 (87)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444433444555555554 44889999999999999999999999988763
No 102
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=54.83 E-value=1.4e+02 Score=33.46 Aligned_cols=80 Identities=20% Similarity=0.287 Sum_probs=60.9
Q ss_pred HHHHHHHHHhHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10418 259 QKLRGQVDSLRDQMRLKEKELGYRNSDVDNLKRQIDRLTSTVRELRRKQRLSQVQVRGLIDERADFLAALQDHQREVAAL 338 (389)
Q Consensus 259 ~kLKe~VdkQRdeiRak~~el~~k~~evEaLq~Q~~RL~~~n~eLRrk~~~~q~Q~r~l~eekadl~a~lq~~~~ei~~L 338 (389)
..|...|.+-|-+|+-.+.+|...-.+|.+--.-++|...--.++|||.-++++.-..--....-|....+.-+.-+..+
T Consensus 82 ~~L~~everLraei~~l~~~I~~~e~e~~~~e~~~~q~~~~~~~~~~k~~LL~Ay~q~c~~~~~~l~e~~~rl~~~~~~~ 161 (632)
T PF14817_consen 82 RELEKEVERLRAEIQELDKEIESREREVSRQEASREQMLDKISDSRHKQLLLEAYSQQCEEQRRILREYTKRLQGQVEQL 161 (632)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677888889999999999888888888888888888888999999999999987766665555544444444333333
No 103
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=54.74 E-value=3.6e+02 Score=30.50 Aligned_cols=178 Identities=19% Similarity=0.320 Sum_probs=92.5
Q ss_pred hhHHHhhhhhhHHHHhHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh--hcCCCCCccCC-CC
Q psy10418 63 TKLQELGDHISKLEHEKL---------EREVEEIEESWKEETQQLVEMVNRLQEENKKLSKRLE--HEGSSPMKSQQ-LS 130 (389)
Q Consensus 63 ~~~e~L~~~~~qle~Ek~---------~~Ele~~Ed~~r~E~~eL~~~V~~LqeeN~~L~~~Ls--~~~~~~~~~~~-~~ 130 (389)
.++..|+.++++|+..-+ .+-+.++|..+..|.+.-..-=++|.+|-+.-...-. ........... .+
T Consensus 460 ~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LEkrL~eE~~~R~~lEkQL~eErk~r~~ee~~aar~~~~~~~~r~e~ 539 (697)
T PF09726_consen 460 SELSQLRQENEQLQNKLQNLVQARQQDKQSLQQLEKRLAEERRQRASLEKQLQEERKARKEEEEKAARALAQAQATRQEC 539 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhccccchhccchh
Confidence 667777877776654221 4456666766666655555555556655443222110 00000000111 22
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccCCCCCCcccccccccCCCCCCCCcccHHHHHHHHHhhHHHHHHHH
Q psy10418 131 PEIDISVLQKLRGQVDSLRDQMRLKEKELGYRNSDVDNSDIPDLSNKAVYDLDDPNRPRFTTAELKEILHDRNTLKTRLN 210 (389)
Q Consensus 131 ~e~er~vm~kLKe~VdkQRDeiRake~eL~~k~~dve~l~~~~L~~~~~~d~~dpnrPrFTl~ELreVL~ERNELKa~vf 210 (389)
.|.=++=.+.|..-++++|.|++.+|-.+..--.++ ++||..- -
T Consensus 540 ~e~~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~--------------------------~~lr~~~----------~ 583 (697)
T PF09726_consen 540 AESCRQRRRQLESELKKLRRELKQKEEQIRELESEL--------------------------QELRKYE----------K 583 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------------HHHHHHH----------h
Confidence 333344456677789999999999886654222221 2232211 1
Q ss_pred HHHHHH-HhhhhhHHHHHHHHHHhhhhhhcCCCCCccCCCCchhhHHHHHHHHHHHHHhHHHHHHhhhhhhhhhhhHHHH
Q psy10418 211 ELEEER-QCFKMVNRLQEENKKLSKRLEHEGSSPMKSQQLSPEIDISALQKLRGQVDSLRDQMRLKEKELGYRNSDVDNL 289 (389)
Q Consensus 211 ~LqEEl-~~~~~V~qLqeeNk~L~~~ls~~~~~~~~~~e~~~~~d~~vm~kLKe~VdkQRdeiRak~~el~~k~~evEaL 289 (389)
.-+.|. .++.-++-+|+.|..|-.+|+... ++ =..++..|-++.. +|......|..+-.||..|
T Consensus 584 e~~~~~e~L~~aL~amqdk~~~LE~sLsaEt--------ri---KldLfsaLg~akr----q~ei~~~~~~~~d~ei~~l 648 (697)
T PF09726_consen 584 ESEKDTEVLMSALSAMQDKNQHLENSLSAET--------RI---KLDLFSALGDAKR----QLEIAQGQLRKKDKEIEEL 648 (697)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHhhhHHH--------HH---HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Confidence 112233 245666778889999998888653 22 3366666666633 3444444444444444444
Q ss_pred HH
Q psy10418 290 KR 291 (389)
Q Consensus 290 q~ 291 (389)
..
T Consensus 649 k~ 650 (697)
T PF09726_consen 649 KA 650 (697)
T ss_pred HH
Confidence 44
No 104
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=54.55 E-value=1.8e+02 Score=28.72 Aligned_cols=75 Identities=16% Similarity=0.327 Sum_probs=41.9
Q ss_pred HHHhHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
Q psy10418 265 VDSLRDQMRLKEKELGYRNSDVDNLKRQIDRLTSTVRELRRKQRLSQVQVRGLID--ERADFLAALQDHQREVAALK 339 (389)
Q Consensus 265 VdkQRdeiRak~~el~~k~~evEaLq~Q~~RL~~~n~eLRrk~~~~q~Q~r~l~e--ekadl~a~lq~~~~ei~~L~ 339 (389)
+++.+-++-+.-..+..+..+++.+..|+-++..--.++|.|.+..+.++.+.-. +..+|.-.++...+.+.+|.
T Consensus 33 l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~v~~~~e~~aL~~E~~~ak~r~~~le 109 (239)
T COG1579 33 LKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLSAVKDERELRALNIEIQIAKERINSLE 109 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444445555556777888888888888888888777777633322 22344444444444333333
No 105
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=54.10 E-value=1.8e+02 Score=28.38 Aligned_cols=99 Identities=16% Similarity=0.320 Sum_probs=0.0
Q ss_pred chhhchhhHHHHHHHhHHHHhcc---ccccchhHHHhhhhhhHHHHhHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10418 35 DAVTSIMPKVIVALEHLECLASK---NERENTKLQELGDHISKLEHEKL--EREVEEIEESWKEETQQLVEMVNRLQEEN 109 (389)
Q Consensus 35 d~V~~LmpkVV~vLElLEs~~~~---~~~e~~~~e~L~~~~~qle~Ek~--~~Ele~~Ed~~r~E~~eL~~~V~~LqeeN 109 (389)
++|++|=-|+.-.-.+...+... -+.+..-+.+++.+++.|..|+. .++|.+|.. ++..|..-|.++++++
T Consensus 1 e~i~~ir~K~~~lek~k~~i~~e~~~~e~ee~~L~e~~kE~~~L~~Er~~h~eeLrqI~~----DIn~lE~iIkqa~~er 76 (230)
T PF10146_consen 1 EKIKEIRNKTLELEKLKNEILQEVESLENEEKCLEEYRKEMEELLQERMAHVEELRQINQ----DINTLENIIKQAESER 76 (230)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Q ss_pred HHHhhhhhhcCCCCCccCCCCchHHHHHHHHHHHHHHHHHHH-H
Q psy10418 110 KKLSKRLEHEGSSPMKSQQLSPEIDISVLQKLRGQVDSLRDQ-M 152 (389)
Q Consensus 110 ~~L~~~Ls~~~~~~~~~~~~~~e~er~vm~kLKe~VdkQRDe-i 152 (389)
.+......... ..+.+||+.||+.|-+ +
T Consensus 77 ~~~~~~i~r~~---------------eey~~Lk~~in~~R~e~l 105 (230)
T PF10146_consen 77 NKRQEKIQRLY---------------EEYKPLKDEINELRKEYL 105 (230)
T ss_pred HHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHc
No 106
>PRK11546 zraP zinc resistance protein; Provisional
Probab=53.77 E-value=72 Score=29.16 Aligned_cols=69 Identities=13% Similarity=0.181 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-HHHHhhhhhhc
Q psy10418 286 VDNLKRQIDRLTSTVRELRRKQRLSQVQVRGLIDERADFLAALQDHQREVAALKQQLG-LAEKENEDLYN 354 (389)
Q Consensus 286 vEaLq~Q~~RL~~~n~eLRrk~~~~q~Q~r~l~eekadl~a~lq~~~~ei~~L~~~lg-~~~k~~~dl~~ 354 (389)
-.+++.-.+.+..--.+||.++..-+..+++|..--.-=.+.+....+||..|+..|. .+.+..-.+.+
T Consensus 49 Qa~~q~I~~~f~~~t~~LRqqL~aKr~ELnALl~~~~pD~~kI~aL~kEI~~Lr~kL~e~r~~~~~~~~k 118 (143)
T PRK11546 49 QAAWQKIHNDFYAQTSALRQQLVSKRYEYNALLTANPPDSSKINAVAKEMENLRQSLDELRVKRDIAMAE 118 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555556666666677777777777777666555555667777777777777776 44444333333
No 107
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=53.49 E-value=1.5e+02 Score=28.49 Aligned_cols=142 Identities=18% Similarity=0.277 Sum_probs=85.8
Q ss_pred CcccHHHHHHHHHhhH--HHH--------HHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhhcCCCCCccCCCCchhhHHH
Q psy10418 188 PRFTTAELKEILHDRN--TLK--------TRLNELEEERQCFKMVNRLQEENKKLSKRLEHEGSSPMKSQQLSPEIDISA 257 (389)
Q Consensus 188 PrFTl~ELreVL~ERN--ELK--------a~vf~LqEEl~~~~~V~qLqeeNk~L~~~ls~~~~~~~~~~e~~~~~d~~v 257 (389)
+-=|..||..+|+.+. ||. +-+|.--.||-||=-+-+ .+.+|.-+..... ...+ .+
T Consensus 24 ~~g~vaEL~qli~~~~ltElRTtyNGsYGASLlF~~~eltYYVALfq----~k~fWRViKt~d~-------~~AE---~~ 89 (192)
T PF11180_consen 24 AQGNVAELQQLIQDHQLTELRTTYNGSYGASLLFYPKELTYYVALFQ----QKAFWRVIKTQDE-------ARAE---AI 89 (192)
T ss_pred CcccHHHHHHHHHcCchhhhhhhccCCccceeeecCCcceeeeeeee----cCceeEeeecCCh-------hhHH---HH
Confidence 5567889999999885 444 457788888888822111 1344443333221 1111 11
Q ss_pred HHHHHH------HHHHhHHHHHHh----hhhhhhhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10418 258 LQKLRG------QVDSLRDQMRLK----EKELGYRNSDVDNLKRQIDRLTSTVRELRRKQRLSQVQVRGLIDERADFLAA 327 (389)
Q Consensus 258 m~kLKe------~VdkQRdeiRak----~~el~~k~~evEaLq~Q~~RL~~~n~eLRrk~~~~q~Q~r~l~eekadl~a~ 327 (389)
-..+-. -++=.|-.|-|. ++.|.....-...||..+++-...-...--++..++.+..+|-.+|....++
T Consensus 90 Y~~F~~Qt~~LA~~eirR~~LeAQka~~eR~ia~~~~ra~~LqaDl~~~~~Q~~~va~~Q~q~r~ea~aL~~e~~aaqaQ 169 (192)
T PF11180_consen 90 YRDFAQQTARLADVEIRRAQLEAQKAQLERLIAESEARANRLQADLQIARQQQQQVAARQQQARQEAQALEAERRAAQAQ 169 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111110 112222222222 2333333334556666666666666666677888999999999999999999
Q ss_pred HHHHHHHHHHHHHHhh
Q psy10418 328 LQDHQREVAALKQQLG 343 (389)
Q Consensus 328 lq~~~~ei~~L~~~lg 343 (389)
|-..|+.|-.|..+..
T Consensus 170 L~~lQ~qv~~Lq~q~~ 185 (192)
T PF11180_consen 170 LRQLQRQVRQLQRQAN 185 (192)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 9999999999988764
No 108
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=53.00 E-value=1.1e+02 Score=29.40 Aligned_cols=37 Identities=19% Similarity=0.271 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy10418 306 KQRLSQVQVRGLIDERADFLAALQDHQREVAALKQQL 342 (389)
Q Consensus 306 k~~~~q~Q~r~l~eekadl~a~lq~~~~ei~~L~~~l 342 (389)
.+..+..|+..|-.....+.+.+.+++++|..|..++
T Consensus 57 e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi 93 (251)
T PF11932_consen 57 EYRQLEREIENLEVYNEQLERQVASQEQELASLEQQI 93 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333333333
No 109
>KOG0977|consensus
Probab=52.88 E-value=3.6e+02 Score=29.85 Aligned_cols=143 Identities=17% Similarity=0.271 Sum_probs=71.2
Q ss_pred hHHHHHHHHHHHHHHHhh-hhhHHHHHHHHHHhhhhhhcC---CCCCccCCCCchhhHHHHHHHHHHHHHhHHHHHHhhh
Q psy10418 202 RNTLKTRLNELEEERQCF-KMVNRLQEENKKLSKRLEHEG---SSPMKSQQLSPEIDISALQKLRGQVDSLRDQMRLKEK 277 (389)
Q Consensus 202 RNELKa~vf~LqEEl~~~-~~V~qLqeeNk~L~~~ls~~~---~~~~~~~e~~~~~d~~vm~kLKe~VdkQRdeiRak~~ 277 (389)
|--=|-.+..|+.=|+.| -.|..|-.+|..|...+.... +.+..+--.+-+.++.-..++=+.+.+=|-++ ..
T Consensus 37 R~rEK~El~~LNDRLA~YIekVR~LEaqN~~L~~di~~lr~~~~~~ts~ik~~ye~El~~ar~~l~e~~~~ra~~---e~ 113 (546)
T KOG0977|consen 37 REREKKELQELNDRLAVYIEKVRFLEAQNRKLEHDINLLRGVVGRETSGIKAKYEAELATARKLLDETARERAKL---EI 113 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchhHHhhhhHHHHHHHHHHHHHHHHHH---HH
Confidence 344466678899999866 899999999999998887333 11111111111222222222222221111111 11
Q ss_pred hhhhhhhhHHHHHHHHHHH-------HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q psy10418 278 ELGYRNSDVDNLKRQIDRL-------TSTVRELRRKQRLSQVQVRGLIDERADFLAALQDHQREVAALKQQLGLAEK 347 (389)
Q Consensus 278 el~~k~~evEaLq~Q~~RL-------~~~n~eLRrk~~~~q~Q~r~l~eekadl~a~lq~~~~ei~~L~~~lg~~~k 347 (389)
++.....|++.+...++-. ..-..+...+..-+++..-++--....|+-.+....+++..|+..|+-+.+
T Consensus 114 ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~ 190 (546)
T KOG0977|consen 114 EITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARK 190 (546)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 2222222222222111111 111222344555566666666666777777777777777777777764433
No 110
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=52.24 E-value=87 Score=26.80 Aligned_cols=74 Identities=18% Similarity=0.206 Sum_probs=40.9
Q ss_pred hhhhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhhhhccccc
Q psy10418 279 LGYRNSDVDNLKRQIDRLTSTVRELRRKQRLSQVQVRGLIDERADFLAALQDHQREVAALKQQLGLAEKENEDLYNSQET 358 (389)
Q Consensus 279 l~~k~~evEaLq~Q~~RL~~~n~eLRrk~~~~q~Q~r~l~eekadl~a~lq~~~~ei~~L~~~lg~~~k~~~dl~~~~~~ 358 (389)
+.....++++++.++++|..-|..|++....++.- ...+|+.| |.+||+...- |-. ++|.
T Consensus 29 ~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~~-~dyiEe~A----------------R~~Lg~vk~g-Eiv--y~~~ 88 (105)
T PRK00888 29 YWRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKGG-QEAIEERA----------------RNELGMVKPG-ETF--YRIV 88 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCc-HHHHHHHH----------------HHHcCCCCCC-CEE--EEeC
Confidence 34445566666666666666666666666666541 23444433 5577754332 111 1233
Q ss_pred cC-CCCCCCCCCCCC
Q psy10418 359 TS-EEERPVQGPLPY 372 (389)
Q Consensus 359 ~~-~~~~pvqgp~p~ 372 (389)
.+ ++++|.-||.|.
T Consensus 89 ~~~~~~~~~~~~~~~ 103 (105)
T PRK00888 89 PDASKRAAAAGQPPR 103 (105)
T ss_pred CCCcCCCCCCCCCCC
Confidence 33 557888888774
No 111
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=52.20 E-value=2.7e+02 Score=28.31 Aligned_cols=111 Identities=23% Similarity=0.361 Sum_probs=67.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhh-----cc
Q psy10418 88 EESWKEETQQLVEMVNRLQEENKKLSKRLEHEGSSPMKSQQLSPEIDISVLQKLRGQVDSLRDQMRLKEKELG-----YR 162 (389)
Q Consensus 88 Ed~~r~E~~eL~~~V~~LqeeN~~L~~~Ls~~~~~~~~~~~~~~e~er~vm~kLKe~VdkQRDeiRake~eL~-----~k 162 (389)
.+.+.....++...+.+++-+++...+.+ ++.......|+..++..|++|+.++.-|. ..
T Consensus 114 vd~Lkd~lee~eE~~~~~~re~~eK~~el---------------Er~K~~~d~L~~e~~~Lre~L~~rdeli~khGlVlv 178 (302)
T PF09738_consen 114 VDLLKDKLEELEETLAQLQREYREKIREL---------------ERQKRAHDSLREELDELREQLKQRDELIEKHGLVLV 178 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCeeeC
Confidence 55666677777777777777765443322 34556667788888888888887765442 11
Q ss_pred cccCCC---CCCcccccccccCCCCCCCCc--------------ccH-HHHHHHHHhhHHHHHHHHHHHHHHHhhhh
Q psy10418 163 NSDVDN---SDIPDLSNKAVYDLDDPNRPR--------------FTT-AELKEILHDRNTLKTRLNELEEERQCFKM 221 (389)
Q Consensus 163 ~~dve~---l~~~~L~~~~~~d~~dpnrPr--------------FTl-~ELreVL~ERNELKa~vf~LqEEl~~~~~ 221 (389)
.. +.+ ...+. + ..-|.+.- =|| .=|+.+..||++|-.+|-.|+..|..++.
T Consensus 179 ~~-~~ngd~~~~~~--~-----~~~~~~~~vs~e~a~~L~~aG~g~LDvRLkKl~~eke~L~~qv~klk~qLee~~~ 247 (302)
T PF09738_consen 179 PD-ATNGDTSDEPN--N-----VGHPKRALVSQEAAQLLESAGDGSLDVRLKKLADEKEELLEQVRKLKLQLEERQS 247 (302)
T ss_pred CC-CCCCccccCcc--c-----cCCCcccccchhhhhhhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 11 111 00000 0 00000111 234 35899999999999999999999987764
No 112
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=51.33 E-value=1.4e+02 Score=32.38 Aligned_cols=53 Identities=13% Similarity=0.125 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy10418 286 VDNLKRQIDRLTSTVRELRRKQRLSQVQVRGLIDERADFLAALQDHQREVAALKQQL 342 (389)
Q Consensus 286 vEaLq~Q~~RL~~~n~eLRrk~~~~q~Q~r~l~eekadl~a~lq~~~~ei~~L~~~l 342 (389)
.-||.+|..++. ||-.+++.++..+..+-..+.++++.|.+.+.++.+|+.++
T Consensus 68 qSALteqQ~kas----ELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql 120 (475)
T PRK13729 68 QHATTEMQVTAA----QMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQV 120 (475)
T ss_pred HHHHHHHHHHHH----HHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 345555555443 44555566666666666677788888889999999999888
No 113
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=50.66 E-value=69 Score=30.08 Aligned_cols=57 Identities=26% Similarity=0.487 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy10418 286 VDNLKRQIDRLTSTVRELRRKQRLSQVQVRGLIDERADFLAALQDHQREVAALKQQLG 343 (389)
Q Consensus 286 vEaLq~Q~~RL~~~n~eLRrk~~~~q~Q~r~l~eekadl~a~lq~~~~ei~~L~~~lg 343 (389)
++.|+..++.+..-..+|..+.... ..+|.-.++|+.+.+.+....+++..|+.+|-
T Consensus 71 ~~~l~~~~~~~~~~i~~l~~~i~~~-~~~r~~~~eR~~~l~~l~~l~~~~~~l~~el~ 127 (188)
T PF03962_consen 71 LEKLQKEIEELEKKIEELEEKIEEA-KKGREESEEREELLEELEELKKELKELKKELE 127 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HhcccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444 33444457777778888887777777777774
No 114
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=50.34 E-value=1.2e+02 Score=24.88 Aligned_cols=23 Identities=26% Similarity=0.341 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q psy10418 91 WKEETQQLVEMVNRLQEENKKLS 113 (389)
Q Consensus 91 ~r~E~~eL~~~V~~LqeeN~~L~ 113 (389)
+..|..+++....-|+.+|.+|.
T Consensus 37 l~~e~q~~q~~reaL~~eneqlk 59 (79)
T COG3074 37 LSQEVQNAQHQREALERENEQLK 59 (79)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444555555555443
No 115
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=49.85 E-value=2e+02 Score=26.12 Aligned_cols=102 Identities=20% Similarity=0.242 Sum_probs=65.7
Q ss_pred cHHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhhcCCCCCccCCCCchhhHHHHHHHHHHHHHhHH
Q psy10418 191 TTAELKEILHDRNTLKTRLNELEEERQCFKMVNRLQEENKKLSKRLEHEGSSPMKSQQLSPEIDISALQKLRGQVDSLRD 270 (389)
Q Consensus 191 Tl~ELreVL~ERNELKa~vf~LqEEl~~~~~V~qLqeeNk~L~~~ls~~~~~~~~~~e~~~~~d~~vm~kLKe~VdkQRd 270 (389)
...+|+.+=.+..-|+-+|+-|+-||...+- |+.....= .+--..++..|++.+..-..
T Consensus 8 v~~kLK~~~~e~dsle~~v~~LEreLe~~q~-------~~e~~~~d--------------aEn~k~eie~L~~el~~lt~ 66 (140)
T PF10473_consen 8 VEEKLKESESEKDSLEDHVESLERELEMSQE-------NKECLILD--------------AENSKAEIETLEEELEELTS 66 (140)
T ss_pred HHHHHHHHHHhHhhHHHHHHHHHHHHHHHHH-------hHHHHHHH--------------HHHHHHHHHHHHHHHHHHHH
Confidence 3468999999999999999999999986652 22221100 01123556667777776667
Q ss_pred HHHHhhhhhhhhhhhHHH-------HHHHHHHHHHhhHHHHHHHHHHHHH
Q psy10418 271 QMRLKEKELGYRNSDVDN-------LKRQIDRLTSTVRELRRKQRLSQVQ 313 (389)
Q Consensus 271 eiRak~~el~~k~~evEa-------Lq~Q~~RL~~~n~eLRrk~~~~q~Q 313 (389)
+++....+|...+++-+. +|.++.=|-..|.++++-+..+...
T Consensus 67 el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE~~~~~~~~~l~~~E~e 116 (140)
T PF10473_consen 67 ELNQLELELDTLRSEKENLDKELQKKQEKVSELESLNSSLENLLQEKEQE 116 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 777777777776666544 4555556666666666655555555
No 116
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=49.28 E-value=5.6 Score=44.06 Aligned_cols=27 Identities=22% Similarity=0.338 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy10418 90 SWKEETQQLVEMVNRLQEENKKLSKRL 116 (389)
Q Consensus 90 ~~r~E~~eL~~~V~~LqeeN~~L~~~L 116 (389)
.+...+.+|..+|..|++++..|....
T Consensus 190 ~l~q~~~el~~~i~~L~~e~~~L~~e~ 216 (713)
T PF05622_consen 190 ELAQRCHELEKQISDLQEEKESLQSEN 216 (713)
T ss_dssp ---------------------------
T ss_pred HHHHHHHHHHHHHHHHHHhHHHhhhhh
Confidence 455566777777777776666555443
No 117
>KOG0982|consensus
Probab=49.00 E-value=3.8e+02 Score=29.03 Aligned_cols=135 Identities=23% Similarity=0.265 Sum_probs=85.0
Q ss_pred HHHhhHHHHHHHHHHHHHHHhhh--------hhHHHHHHHHHHhhhhhhcCCCCCccCCCCchhhHHHHHHHHHHHHHhH
Q psy10418 198 ILHDRNTLKTRLNELEEERQCFK--------MVNRLQEENKKLSKRLEHEGSSPMKSQQLSPEIDISALQKLRGQVDSLR 269 (389)
Q Consensus 198 VL~ERNELKa~vf~LqEEl~~~~--------~V~qLqeeNk~L~~~ls~~~~~~~~~~e~~~~~d~~vm~kLKe~VdkQR 269 (389)
+.-+|+.+--+|-.|+++...+. +-++|.-||-.|-.+.---.+. ...++. -.=..|-+--+++|
T Consensus 213 mee~r~di~~kv~flerkv~eledd~~~~gd~~SrlkqEnlqLvhR~h~LEEq-~reqEl------raeE~l~Ee~rrhr 285 (502)
T KOG0982|consen 213 MEEERIDIERKVRFLERKVQELEDDQNIAGDRSSRLKQENLQLVHRYHMLEEQ-RREQEL------RAEESLSEEERRHR 285 (502)
T ss_pred hhchhhhHHHHHHHHHHHHHHhhcchhccccchhHHHHHHHHHHHHHHHHHHH-HHhhhh------hHHHHHHHHHHHHH
Confidence 44578888888888888877553 2456666777776543321100 001111 11233445556677
Q ss_pred HHHHHhhhhhhhhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHh
Q psy10418 270 DQMRLKEKELGYRNSDVDNLKRQIDRLTSTVRELRRKQRLSQVQVRGLIDER---ADFLAALQDHQREVAALKQQL 342 (389)
Q Consensus 270 deiRak~~el~~k~~evEaLq~Q~~RL~~~n~eLRrk~~~~q~Q~r~l~eek---adl~a~lq~~~~ei~~L~~~l 342 (389)
.-+.-+.++ ++-++|++|.-+.-|---|.+||-=.+-+.++.--|-+++ .|..-++-.+-.+...++.+.
T Consensus 286 Eil~k~eRe---asle~Enlqmr~qqleeentelRs~~arlksl~dklaee~qr~sd~LE~lrlql~~eq~l~~rm 358 (502)
T KOG0982|consen 286 EILIKKERE---ASLEKENLQMRDQQLEEENTELRSLIARLKSLADKLAEEDQRSSDLLEALRLQLICEQKLRVRM 358 (502)
T ss_pred HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666654 5668899999999999999999998888888877777777 344444444444444444443
No 118
>PRK15048 methyl-accepting chemotaxis protein II; Provisional
Probab=48.70 E-value=3.5e+02 Score=28.59 Aligned_cols=59 Identities=14% Similarity=0.045 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh-HHHHhhhhhhccccccCCCCCCCCCCCCCCCCC
Q psy10418 316 GLIDERADFLAALQDHQREVAALKQQLG-LAEKENEDLYNSQETTSEEERPVQGPLPYEPDD 376 (389)
Q Consensus 316 ~l~eekadl~a~lq~~~~ei~~L~~~lg-~~~k~~~dl~~~~~~~~~~~~pvqgp~p~ep~~ 376 (389)
..+++=++.-.+.-..-+++......|. .+.+++.-... |.+.+.-.|+..|=|.+|+.
T Consensus 473 ~~~~~i~~~~~~~~~~~~~~~~~a~~l~~~a~~L~~~v~~--fk~~~~~~~~~~~~~~~~~~ 532 (553)
T PRK15048 473 LAVSEMDRVTQQNASLVQESAAAAAALEEQASRLTQAVSA--FRLAASPLTNKPQTPSRPAS 532 (553)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hhcCCCcccccccccccccc
Confidence 3333333333333344455555556665 66666655554 88888888888888888887
No 119
>PRK03918 chromosome segregation protein; Provisional
Probab=48.24 E-value=4.4e+02 Score=29.56 Aligned_cols=23 Identities=9% Similarity=0.293 Sum_probs=14.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Q psy10418 132 EIDISVLQKLRGQVDSLRDQMRL 154 (389)
Q Consensus 132 e~er~vm~kLKe~VdkQRDeiRa 154 (389)
+.-..++.++...+...+++++.
T Consensus 448 ~~~~el~~~~~~ei~~l~~~~~~ 470 (880)
T PRK03918 448 EHRKELLEEYTAELKRIEKELKE 470 (880)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Confidence 34455667777777666666664
No 120
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=47.32 E-value=1.5e+02 Score=23.93 Aligned_cols=64 Identities=17% Similarity=0.238 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-HHHHhh
Q psy10418 286 VDNLKRQIDRLTSTVRELRRKQRLSQVQVRGLIDERADFLAALQDHQREVAALKQQLG-LAEKEN 349 (389)
Q Consensus 286 vEaLq~Q~~RL~~~n~eLRrk~~~~q~Q~r~l~eekadl~a~lq~~~~ei~~L~~~lg-~~~k~~ 349 (389)
.+.|...+..++-+..-|+.++.-+..+-.+|-+++..|....+....+-.+-..++. +-.|.+
T Consensus 6 l~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~LL~kl~ 70 (72)
T PF06005_consen 6 LEQLEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLRSLLGKLE 70 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4667777777777777777777777777777778888888877777777777777764 555543
No 121
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=46.51 E-value=5e+02 Score=29.70 Aligned_cols=65 Identities=28% Similarity=0.234 Sum_probs=34.5
Q ss_pred hhHHHHHHHHHHHHHhHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10418 253 IDISALQKLRGQVDSLRDQMRLKEKELGYRNSDVDNLKRQIDRLTSTVRELRRKQRLSQVQVRGLIDERADFLAALQDHQ 332 (389)
Q Consensus 253 ~d~~vm~kLKe~VdkQRdeiRak~~el~~k~~evEaLq~Q~~RL~~~n~eLRrk~~~~q~Q~r~l~eekadl~a~lq~~~ 332 (389)
.-..+|..-++.|..-==.||+++-+... ....|+++++-+|.++-+.-.+.+=|.-.|||+.
T Consensus 303 K~q~LL~~WREKVFaLmVQLkaQeleh~~-----------------~~~qL~~qVAsLQeev~sq~qEqaiLq~SLqDK~ 365 (739)
T PF07111_consen 303 KCQQLLSRWREKVFALMVQLKAQELEHRD-----------------SVKQLRGQVASLQEEVASQQQEQAILQHSLQDKA 365 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHhhh-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 34566777777777655555555544332 1223445555555555555555555555555544
Q ss_pred HH
Q psy10418 333 RE 334 (389)
Q Consensus 333 ~e 334 (389)
-+
T Consensus 366 AE 367 (739)
T PF07111_consen 366 AE 367 (739)
T ss_pred HH
Confidence 43
No 122
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=46.35 E-value=2.7e+02 Score=26.53 Aligned_cols=18 Identities=28% Similarity=0.634 Sum_probs=9.1
Q ss_pred HHHHHHHhhHHHHHHHHH
Q psy10418 194 ELKEILHDRNTLKTRLNE 211 (389)
Q Consensus 194 ELreVL~ERNELKa~vf~ 211 (389)
++.++..++..|+.++..
T Consensus 28 ~l~~~~~~~~~l~~~i~~ 45 (302)
T PF10186_consen 28 ELQQLKEENEELRRRIEE 45 (302)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444555555555555443
No 123
>PRK11281 hypothetical protein; Provisional
Probab=46.17 E-value=2.2e+02 Score=33.93 Aligned_cols=137 Identities=16% Similarity=0.199 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhhcC----------CCCCccCCCCchh--hHHHHHHHHHHHHHhHHHHH
Q psy10418 206 KTRLNELEEERQCFKMVNRLQEENKKLSKRLEHEG----------SSPMKSQQLSPEI--DISALQKLRGQVDSLRDQMR 273 (389)
Q Consensus 206 Ka~vf~LqEEl~~~~~V~qLqeeNk~L~~~ls~~~----------~~~~~~~e~~~~~--d~~vm~kLKe~VdkQRdeiR 273 (389)
|+-+..++.=|+.|..+.....++..|.+++...+ +...+........ +..-+..|-..+.+-.+.+-
T Consensus 59 k~~~~~l~~tL~~L~qi~~~~~~~~~L~k~l~~Ap~~l~~a~~~Le~Lk~~~~~~~~~~~~~~Sl~qLEq~L~q~~~~Lq 138 (1113)
T PRK11281 59 KLVQQDLEQTLALLDKIDRQKEETEQLKQQLAQAPAKLRQAQAELEALKDDNDEETRETLSTLSLRQLESRLAQTLDQLQ 138 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhccccccccccccccCHHHHHHHHHHHHHHHH
Q ss_pred HhhhhhhhhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHh
Q psy10418 274 LKEKELGYRNSDVDNLKRQIDRLTSTVRELRRKQRLSQVQVRGLI--------DERADFLAALQDHQREVAALKQQL 342 (389)
Q Consensus 274 ak~~el~~k~~evEaLq~Q~~RL~~~n~eLRrk~~~~q~Q~r~l~--------eekadl~a~lq~~~~ei~~L~~~l 342 (389)
....+|...|+.+-+++.+.+|....-.+-+.+..-..+|+.+.. .++.-++|.+.-..-++..+++.|
T Consensus 139 ~~Q~~La~~NsqLi~~qT~PERAQ~~lsea~~RlqeI~~~L~~~~~~~~~l~~~~~~~l~ae~~~l~~~~~~~~~~l 215 (1113)
T PRK11281 139 NAQNDLAEYNSQLVSLQTQPERAQAALYANSQRLQQIRNLLKGGKVGGKALRPSQRVLLQAEQALLNAQNDLQRKSL 215 (1113)
T ss_pred HHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHH
No 124
>PLN02939 transferase, transferring glycosyl groups
Probab=44.76 E-value=6e+02 Score=30.13 Aligned_cols=29 Identities=24% Similarity=0.374 Sum_probs=24.2
Q ss_pred ccHHHHHHHHHhhHHHHHHHHHHHHHHHh
Q psy10418 190 FTTAELKEILHDRNTLKTRLNELEEERQC 218 (389)
Q Consensus 190 FTl~ELreVL~ERNELKa~vf~LqEEl~~ 218 (389)
+.+.+|..||+|+..|-.+++.|+--|..
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (977)
T PLN02939 153 QALEDLEKILTEKEALQGKINILEMRLSE 181 (977)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHhhh
Confidence 45678999999999999999988876654
No 125
>KOG3759|consensus
Probab=44.72 E-value=1.6e+02 Score=32.08 Aligned_cols=75 Identities=24% Similarity=0.392 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHhHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10418 256 SALQKLRGQVDSLRDQMRLKEKELGYRNSDVDNLKRQIDRLTSTVRELRRKQRLSQVQVRGLIDERADFLAALQDHQREV 335 (389)
Q Consensus 256 ~vm~kLKe~VdkQRdeiRak~~el~~k~~evEaLq~Q~~RL~~~n~eLRrk~~~~q~Q~r~l~eekadl~a~lq~~~~ei 335 (389)
.+|.|=|-++|+.|.+|- .|-||.+|+. .||||.+...=+|+-.=..+|..|.++|++|=..
T Consensus 177 viLekQk~ilDeLr~Kl~--------lnl~i~~lst---------eelr~qVD~A~~q~VnP~k~KeQLV~QLkTQItD- 238 (621)
T KOG3759|consen 177 VILEKQKAILDELREKLE--------LNLDIDKLST---------EELRRQVDDALKQLVNPFKEKEQLVDQLKTQITD- 238 (621)
T ss_pred HHHHHHHHHHHHHHHHhh--------ccCCcccccH---------HHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHH-
Confidence 677777888886666552 3445777654 6899999999999999999999999999987444
Q ss_pred HHHHHHhhHHHHhhh
Q psy10418 336 AALKQQLGLAEKENE 350 (389)
Q Consensus 336 ~~L~~~lg~~~k~~~ 350 (389)
|-+=+....+++.
T Consensus 239 --LErFInFlQ~e~~ 251 (621)
T KOG3759|consen 239 --LERFINFLQDEVG 251 (621)
T ss_pred --HHHHHHHHHHhhh
Confidence 3333444444443
No 126
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=44.39 E-value=2.9e+02 Score=30.11 Aligned_cols=18 Identities=28% Similarity=0.445 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy10418 136 SVLQKLRGQVDSLRDQMR 153 (389)
Q Consensus 136 ~vm~kLKe~VdkQRDeiR 153 (389)
+||.|||+..-+|.-.|-
T Consensus 317 EvL~kLk~tn~kQq~~Iq 334 (527)
T PF15066_consen 317 EVLQKLKHTNRKQQNRIQ 334 (527)
T ss_pred HHHHHHHhhhHHHHHHHH
Confidence 789999999999987774
No 127
>PHA03155 hypothetical protein; Provisional
Probab=44.13 E-value=58 Score=28.87 Aligned_cols=41 Identities=24% Similarity=0.349 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhcCCCCCccCCCCchHHHHHHH
Q psy10418 96 QQLVEMVNRLQEENKKLSKRLEHEGSSPMKSQQLSPEIDISVLQ 139 (389)
Q Consensus 96 ~eL~~~V~~LqeeN~~L~~~Ls~~~~~~~~~~~~~~e~er~vm~ 139 (389)
.+|...+++|+-||+.|...+.+.+.+.+ ..-+..++++|.
T Consensus 11 EeLaaeL~kL~~ENK~LKkkl~~~~~p~d---~~LT~~qKea~I 51 (115)
T PHA03155 11 EELEKELQKLKIENKALKKKLLQHGNPED---ELLTPAQKDAII 51 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccCCCCc---cccCHHHHHHHH
Confidence 46778899999999999999987765432 122344555553
No 128
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=43.87 E-value=1.1e+02 Score=28.25 Aligned_cols=38 Identities=24% Similarity=0.444 Sum_probs=31.4
Q ss_pred HHHHHHHhHHHHHHhhhhhhhhhhhHHHHHHHHHHHHH
Q psy10418 261 LRGQVDSLRDQMRLKEKELGYRNSDVDNLKRQIDRLTS 298 (389)
Q Consensus 261 LKe~VdkQRdeiRak~~el~~k~~evEaLq~Q~~RL~~ 298 (389)
.++..++-..+|.....+|..+..|+++|+.|.+.|.+
T Consensus 152 ~~~~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~~ 189 (192)
T PF05529_consen 152 LKEENKKLSEEIEKLKKELEKKEKEIEALKKQSEGLQK 189 (192)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 55666777788888888888899999999999988764
No 129
>COG3206 GumC Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=43.33 E-value=4.1e+02 Score=27.77 Aligned_cols=125 Identities=23% Similarity=0.266 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHHHhHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHh-hHHHHH-------HHHHHHHHHHHHHHHHHHHHH
Q psy10418 255 ISALQKLRGQVDSLRDQMRLKEKELGYRNSDVDNLKRQIDRLTST-VRELRR-------KQRLSQVQVRGLIDERADFLA 326 (389)
Q Consensus 255 ~~vm~kLKe~VdkQRdeiRak~~el~~k~~evEaLq~Q~~RL~~~-n~eLRr-------k~~~~q~Q~r~l~eekadl~a 326 (389)
..+|..|+.-...-+..|.....++..+.-.+.++..|+.=+... ..|+++ -..+.++|..+|..+.+.+.+
T Consensus 284 s~~i~~Lr~~~~~~~~~~~~l~~~~~~~~p~~~~~~~q~~~~~~~~~~e~~~~~~~~~~~~~~l~~~~~~L~~~~~~l~~ 363 (458)
T COG3206 284 SPTIQDLRQQYAQVRQQIADLSTELGAKHPQLVALEAQLAELRQQIAAELRQILASLPNELALLEQQEAALEKELAQLKG 363 (458)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhhcccChHHHhHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHH
Confidence 347888887777767677777777777777777766666555432 233333 245666777777777776666
Q ss_pred HHH---HHHHHHHHHHHHhh--------HHHHhhhhhhccccccCCC---CCCCCCCCCCCCCCCCC
Q psy10418 327 ALQ---DHQREVAALKQQLG--------LAEKENEDLYNSQETTSEE---ERPVQGPLPYEPDDAPW 379 (389)
Q Consensus 327 ~lq---~~~~ei~~L~~~lg--------~~~k~~~dl~~~~~~~~~~---~~pvqgp~p~ep~~~pw 379 (389)
++. ..+.++..|..++- +..+.++......+++.+- ++|+.++.|.-|.=+.|
T Consensus 364 ~~~~~~~~~~~l~~L~Re~~~~r~~ye~lL~r~qe~~~~~~~~~~n~rvIs~A~~P~~p~~Pk~~l~ 430 (458)
T COG3206 364 RLSKLPKLQVQLRELEREAEAARSLYETLLQRYQELSIQEASPIGNARVISPAVPPLSPSKPKKALI 430 (458)
T ss_pred HHhhchHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCceeEeccccCCCCCCCChHHHH
Confidence 554 23333444444432 2333332222222333322 67777778877764443
No 130
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=43.02 E-value=5.9e+02 Score=29.55 Aligned_cols=77 Identities=17% Similarity=0.202 Sum_probs=46.8
Q ss_pred HHHHHHHHhHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10418 260 KLRGQVDSLRDQMRLKEKELGYRNSDVDNLKRQIDRLTSTVRELRRKQRLSQVQVRGLIDERADFLAALQDHQREVAALK 339 (389)
Q Consensus 260 kLKe~VdkQRdeiRak~~el~~k~~evEaLq~Q~~RL~~~n~eLRrk~~~~q~Q~r~l~eekadl~a~lq~~~~ei~~L~ 339 (389)
.+|+--.+-++.|.-|+.+|-.-... -..+..|+.-=..|.--+.+.+|--+.+.=.|-.-|--.|+.+..||++|+
T Consensus 466 ~q~~Enk~~~~~~~ekd~~l~~~kq~---~d~e~~rik~ev~eal~~~k~~q~kLe~sekEN~iL~itlrQrDaEi~RL~ 542 (861)
T PF15254_consen 466 NQKEENKRLRKMFQEKDQELLENKQQ---FDIETTRIKIEVEEALVNVKSLQFKLEASEKENQILGITLRQRDAEIERLR 542 (861)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHH---HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhhhHhhhHHHHHHHHHHHHH
Confidence 33444444555555555555433221 122345555555566666666677777777777788888888888888877
No 131
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=42.90 E-value=5.8e+02 Score=29.40 Aligned_cols=66 Identities=14% Similarity=0.317 Sum_probs=39.7
Q ss_pred HHHHhhhhhhhhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy10418 271 QMRLKEKELGYRNSDVDNLKRQIDRLTSTVRELRRKQRLSQVQVRGLIDERADFLAALQDHQREVAALKQQLG 343 (389)
Q Consensus 271 eiRak~~el~~k~~evEaLq~Q~~RL~~~n~eLRrk~~~~q~Q~r~l~eekadl~a~lq~~~~ei~~L~~~lg 343 (389)
.|.....+|..-..-++.|+.++.-+.+.| .++..|++..-+-...+..++.+.+-|+..++..++
T Consensus 618 ~lE~~~~qL~E~E~~L~eLq~eL~~~keS~-------s~~E~ql~~~~e~~e~le~~~~~~e~E~~~l~~Ki~ 683 (769)
T PF05911_consen 618 QLESLKNQLKESEQKLEELQSELESAKESN-------SLAETQLKAMKESYESLETRLKDLEAEAEELQSKIS 683 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence 444444444444444455555555555444 345667777777777777777777777777777765
No 132
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=42.65 E-value=1e+02 Score=32.11 Aligned_cols=64 Identities=9% Similarity=0.045 Sum_probs=46.9
Q ss_pred hhhhhhhhhh-HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHH
Q psy10418 276 EKELGYRNSD-VDNLKRQIDRLTSTVRELRRKQRLSQVQVRG--LIDERADFLAALQDHQREVAALK 339 (389)
Q Consensus 276 ~~el~~k~~e-vEaLq~Q~~RL~~~n~eLRrk~~~~q~Q~r~--l~eekadl~a~lq~~~~ei~~L~ 339 (389)
.|||...+-| .-||++..+||.+=|.+||.|+..+.+-+.. +|+.-.-.+++....-+.+...|
T Consensus 23 ~~~~~~~~~~e~~aLr~EN~~LKkEN~~Lk~eVerLE~e~l~s~V~E~vet~dv~~d~i~Kimnk~R 89 (420)
T PF07407_consen 23 NHELEGVSIDENFALRMENHSLKKENNDLKIEVERLENEMLRSHVCEDVETNDVIYDKIVKIMNKMR 89 (420)
T ss_pred cccccccchhhhhhHHHHhHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHh
Confidence 4677776664 7899999999999999999999999998874 44443344555555555555554
No 133
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=42.56 E-value=1.1e+02 Score=29.97 Aligned_cols=60 Identities=13% Similarity=0.225 Sum_probs=41.1
Q ss_pred HHHHhhhhhhhhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10418 271 QMRLKEKELGYRNSDVDNLKRQIDRLTSTVRELRRKQRLSQVQVRGLIDERADFLAALQD 330 (389)
Q Consensus 271 eiRak~~el~~k~~evEaLq~Q~~RL~~~n~eLRrk~~~~q~Q~r~l~eekadl~a~lq~ 330 (389)
.+-..++.+...+.-.-.|+.|++.|..-+.+||-.+...+-|+..+.++..|+-.+|-.
T Consensus 41 r~~~le~~~~~~~~~~~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~dld~ 100 (263)
T PRK10803 41 RVTQLERISNAHSQLLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQIDS 100 (263)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444555555555556777777777777777777777777888888888888777755
No 134
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=42.53 E-value=1.8e+02 Score=23.41 Aligned_cols=6 Identities=17% Similarity=0.362 Sum_probs=2.3
Q ss_pred HHHHHH
Q psy10418 286 VDNLKR 291 (389)
Q Consensus 286 vEaLq~ 291 (389)
|.+|..
T Consensus 14 Ia~L~e 19 (74)
T PF12329_consen 14 IAQLME 19 (74)
T ss_pred HHHHHH
Confidence 333333
No 135
>PF04576 Zein-binding: Zein-binding; InterPro: IPR007656 This is a family of uncharacterised proteins.
Probab=42.08 E-value=1.9e+02 Score=24.86 Aligned_cols=78 Identities=27% Similarity=0.348 Sum_probs=54.0
Q ss_pred HHHhhHHHHHHHHHHHHHHH--------hhhhhHHHHHHHHHHhhhhhhcCCCCCccCCCCchhhHHHHHHHHHHHHHhH
Q psy10418 198 ILHDRNTLKTRLNELEEERQ--------CFKMVNRLQEENKKLSKRLEHEGSSPMKSQQLSPEIDISALQKLRGQVDSLR 269 (389)
Q Consensus 198 VL~ERNELKa~vf~LqEEl~--------~~~~V~qLqeeNk~L~~~ls~~~~~~~~~~e~~~~~d~~vm~kLKe~VdkQR 269 (389)
|=.+|.-+.+=...|++|-. .+.+|.+||+|..-+.-....-.- --+.-...|..+|..|+++|-+.-
T Consensus 8 v~~er~~~~~L~~ELEeER~AaAsAA~EAMaMI~RLQ~EKAa~~mEA~Qy~R----m~EEk~~yD~e~ie~L~~~l~~rE 83 (94)
T PF04576_consen 8 VEAERKALAALYAELEEERSAAASAASEAMAMILRLQEEKAAVEMEARQYQR----MAEEKAEYDQEAIESLKDILYKRE 83 (94)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH----HHHHHHhhHHHHHHHHHHHHHHHH
Confidence 44566667777777888875 568999999987666554442210 000113469999999999999888
Q ss_pred HHHHHhhhhh
Q psy10418 270 DQMRLKEKEL 279 (389)
Q Consensus 270 deiRak~~el 279 (389)
.+|.+...+|
T Consensus 84 ~e~~~Le~el 93 (94)
T PF04576_consen 84 KEIQSLEAEL 93 (94)
T ss_pred HHHHHHHhhc
Confidence 8888877665
No 136
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=41.92 E-value=2.4e+02 Score=24.68 Aligned_cols=76 Identities=25% Similarity=0.309 Sum_probs=0.0
Q ss_pred hhHHHHHHHhHHHHhccccccchhHHHhhhhhhHH--HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy10418 41 MPKVIVALEHLECLASKNERENTKLQELGDHISKL--EHEKLEREVEEIEESWKEETQQLVEMVNRLQEENKKLSKRL 116 (389)
Q Consensus 41 mpkVV~vLElLEs~~~~~~~e~~~~e~L~~~~~ql--e~Ek~~~Ele~~Ed~~r~E~~eL~~~V~~LqeeN~~L~~~L 116 (389)
|-+--.+.+.|-.+=.....-...+..|+...+.. ..+..+..|+.-...+..++.++..++.-|...|+-|+.+|
T Consensus 51 l~~Ha~~~~~L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~~~e~sw~~qk~~le~e~~~~~~r~~dL~~QN~lLh~Ql 128 (132)
T PF07926_consen 51 LVKHAEDIKELQQLREELQELQQEINELKAEAESAKAELEESEASWEEQKEQLEKELSELEQRIEDLNEQNKLLHDQL 128 (132)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 137
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=41.56 E-value=2.1e+02 Score=24.34 Aligned_cols=43 Identities=16% Similarity=0.383 Sum_probs=22.4
Q ss_pred hhhhhhhhhhhHHHH--HHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q psy10418 275 KEKELGYRNSDVDNL--KRQIDRLTSTVRELRRKQRLSQVQVRGL 317 (389)
Q Consensus 275 k~~el~~k~~evEaL--q~Q~~RL~~~n~eLRrk~~~~q~Q~r~l 317 (389)
.+.-++..-..+++| +..+++|..--.+++-+.+.+.++++++
T Consensus 47 ~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v 91 (106)
T PF10805_consen 47 HDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGV 91 (106)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 344444444445555 5555555555555555555555555443
No 138
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=41.52 E-value=2.3e+02 Score=29.34 Aligned_cols=62 Identities=13% Similarity=0.230 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHhhHHHH
Q psy10418 286 VDNLKRQIDRLTSTVRELRRKQRLSQVQVRGLIDERADFLAALQ--------DHQREVAALKQQLGLAEK 347 (389)
Q Consensus 286 vEaLq~Q~~RL~~~n~eLRrk~~~~q~Q~r~l~eekadl~a~lq--------~~~~ei~~L~~~lg~~~k 347 (389)
+.+|+..+.+|.+-|..|..-..-+.+|+.-+|..|.+++.+|= .+-.-|-.|+..|.-++.
T Consensus 139 ~~~l~~~~~~L~~enerL~~e~~~~~~qlE~~v~~K~~~E~~L~~KF~~vLNeKK~KIR~lq~~L~~~~~ 208 (342)
T PF06632_consen 139 NSRLQAENEHLQKENERLESEANKLLKQLEKFVNAKEEHEEDLYAKFVLVLNEKKAKIRELQRLLASAKE 208 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhc
Confidence 45566666677777777777778888999999999998888765 455567777777754443
No 139
>PHA03162 hypothetical protein; Provisional
Probab=40.95 E-value=72 Score=28.96 Aligned_cols=27 Identities=30% Similarity=0.468 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhcCCC
Q psy10418 96 QQLVEMVNRLQEENKKLSKRLEHEGSS 122 (389)
Q Consensus 96 ~eL~~~V~~LqeeN~~L~~~Ls~~~~~ 122 (389)
.+|...+++|+-||+.|...+....++
T Consensus 16 EeLaaeL~kLqmENK~LKkkl~~~~~~ 42 (135)
T PHA03162 16 EDLAAEIAKLQLENKALKKKIKEGTDD 42 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 467788999999999999999766554
No 140
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=40.59 E-value=4.4e+02 Score=27.39 Aligned_cols=150 Identities=16% Similarity=0.292 Sum_probs=91.4
Q ss_pred HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy10418 82 REVEEIEESW----KEETQQLVEMVNRLQEENKKLSKRLEHEGSSPMKSQQLSPEIDISVLQKLRGQVDSLRDQMRLKEK 157 (389)
Q Consensus 82 ~Ele~~Ed~~----r~E~~eL~~~V~~LqeeN~~L~~~Ls~~~~~~~~~~~~~~e~er~vm~kLKe~VdkQRDeiRake~ 157 (389)
.|+|.+-.++ +...+++..++.+.+.-+..+...+.. -+.-|.||...+.+.-|.|..+|+
T Consensus 198 lEvERV~PqLKv~~~~d~kDWR~hleqm~~~~~~I~~~~~~---------------~~~~L~kl~~~i~~~lekI~sREk 262 (359)
T PF10498_consen 198 LEVERVLPQLKVTIRADAKDWRSHLEQMKQHKKSIESALPE---------------TKSQLDKLQQDISKTLEKIESREK 262 (359)
T ss_pred HHHHHHhhhheeeccCCcchHHHHHHHHHHHHHHHHHhhhH---------------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555554443 234567777777666655555444332 346688999999999999999999
Q ss_pred hhhcccccCCCCCCcccccccccCCCCCCCCcccHHHHHHHHHhhHHHHHHHHHHHHHHHhh-hhhHHHHHHHHHHhhhh
Q psy10418 158 ELGYRNSDVDNSDIPDLSNKAVYDLDDPNRPRFTTAELKEILHDRNTLKTRLNELEEERQCF-KMVNRLQEENKKLSKRL 236 (389)
Q Consensus 158 eL~~k~~dve~l~~~~L~~~~~~d~~dpnrPrFTl~ELreVL~ERNELKa~vf~LqEEl~~~-~~V~qLqeeNk~L~~~l 236 (389)
-|..+... -++|.|.+-.+-++.+.+...+.+-+..+ ..++++.+++.+.....
T Consensus 263 ~iN~qle~-------------------------l~~eYr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~IseeLe~vK~em 317 (359)
T PF10498_consen 263 YINNQLEP-------------------------LIQEYRSAQDELSEVQEKYKQASEGVSERTRELAEISEELEQVKQEM 317 (359)
T ss_pred HHHHHhHH-------------------------HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88755544 13455555555555555555555444333 23344445555555555
Q ss_pred hhcCCCCCccCCCCchhhHHHHHHHHHHHHHhHHHHHHhhhhhh
Q psy10418 237 EHEGSSPMKSQQLSPEIDISALQKLRGQVDSLRDQMRLKEKELG 280 (389)
Q Consensus 237 s~~~~~~~~~~e~~~~~d~~vm~kLKe~VdkQRdeiRak~~el~ 280 (389)
..+.. .--|-.-|-++|..+.+-+.+|+--+-.++
T Consensus 318 eerg~---------~mtD~sPlv~IKqAl~kLk~EI~qMdvrIG 352 (359)
T PF10498_consen 318 EERGS---------SMTDGSPLVKIKQALTKLKQEIKQMDVRIG 352 (359)
T ss_pred HHhcC---------CCCCCCHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 54431 112446688899999999999986554443
No 141
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=40.50 E-value=1.2e+02 Score=25.24 Aligned_cols=47 Identities=23% Similarity=0.439 Sum_probs=36.0
Q ss_pred CcccHHHHHHHHHh-hHHHHHHHHHHHHHHH-hhhhhHHHHHHHHHHhh
Q psy10418 188 PRFTTAELKEILHD-RNTLKTRLNELEEERQ-CFKMVNRLQEENKKLSK 234 (389)
Q Consensus 188 PrFTl~ELreVL~E-RNELKa~vf~LqEEl~-~~~~V~qLqeeNk~L~~ 234 (389)
||.+-.++..+-.| |.+|-.++..||.-|. .+.+|.--+++|.+|..
T Consensus 3 p~~~~~d~e~~~~e~k~~Li~ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~ 51 (80)
T PF10224_consen 3 PRRNSEDIEKLEKEEKEELIQEILELQDSLEALSDRVEEVKEENEKLES 51 (80)
T ss_pred CCCchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777755554 8999999999999996 66777777776666653
No 142
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=40.49 E-value=4.3e+02 Score=27.18 Aligned_cols=107 Identities=21% Similarity=0.293 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHHHHhhhhhhcCCCCCccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccCCCCCCcccccc
Q psy10418 98 LVEMVNRLQEENKKLSKRLEHEGSSPMKSQQLSPEIDISVLQKLRGQVDSLRDQMRLKEKELGYRNSDVDNSDIPDLSNK 177 (389)
Q Consensus 98 L~~~V~~LqeeN~~L~~~Ls~~~~~~~~~~~~~~e~er~vm~kLKe~VdkQRDeiRake~eL~~k~~dve~l~~~~L~~~ 177 (389)
+...|+.|...|.-|+..||...+. ...|+...-.-||.||-|-=-|..--.|.
T Consensus 135 mn~d~S~lkd~ne~LsQqLskaesK---------------~nsLe~elh~trdaLrEKtL~lE~~QrdL----------- 188 (305)
T PF14915_consen 135 MNSDVSNLKDNNEILSQQLSKAESK---------------FNSLEIELHHTRDALREKTLALESVQRDL----------- 188 (305)
T ss_pred hcchHHhHHHHhHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------
Confidence 3344777788888888888755432 23356666677888887643332111110
Q ss_pred cccCCCCCCCCcccHHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhhcC
Q psy10418 178 AVYDLDDPNRPRFTTAELKEILHDRNTLKTRLNELEEERQCFKMVNRLQEENKKLSKRLEHEG 240 (389)
Q Consensus 178 ~~~d~~dpnrPrFTl~ELreVL~ERNELKa~vf~LqEEl~~~~~V~qLqeeNk~L~~~ls~~~ 240 (389)
..-.+-+.|+..+.+-=..=-.+...-+|=+ =.++.|||-+|-.|..+|..++
T Consensus 189 --------~Qtq~q~KE~e~m~qne~~kv~k~~~Kqes~--eERL~QlqsEN~LLrQQLddA~ 241 (305)
T PF14915_consen 189 --------SQTQCQIKEIEHMYQNEQDKVNKYIGKQESL--EERLSQLQSENMLLRQQLDDAH 241 (305)
T ss_pred --------HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH
Confidence 1111223344433332111001111111111 1467788889999999999876
No 143
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=40.25 E-value=65 Score=27.58 Aligned_cols=32 Identities=22% Similarity=0.094 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10418 309 LSQVQVRGLIDERADFLAALQDHQREVAALKQ 340 (389)
Q Consensus 309 ~~q~Q~r~l~eekadl~a~lq~~~~ei~~L~~ 340 (389)
.++.|+..+-.+-+++.+.-.....+|..|+.
T Consensus 31 ~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~ 62 (105)
T PRK00888 31 RVNDQVAAQQQTNAKLKARNDQLFAEIDDLKG 62 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 33444444444444444444444444555543
No 144
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=40.17 E-value=1.9e+02 Score=26.14 Aligned_cols=55 Identities=24% Similarity=0.427 Sum_probs=36.6
Q ss_pred HHHHHHHHHHhHHHHHHhhhhhhhhhhh--HHHHHHHHHHHHHhhHHHHHHHHHHHH
Q psy10418 258 LQKLRGQVDSLRDQMRLKEKELGYRNSD--VDNLKRQIDRLTSTVRELRRKQRLSQV 312 (389)
Q Consensus 258 m~kLKe~VdkQRdeiRak~~el~~k~~e--vEaLq~Q~~RL~~~n~eLRrk~~~~q~ 312 (389)
+..|++-+...+.+++...-+|...++. ++.|..++..|..-+..|.-|+..++.
T Consensus 81 i~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 81 IKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5566666666666666666666666665 466777777777777777666666665
No 145
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=39.77 E-value=5.7e+02 Score=28.46 Aligned_cols=76 Identities=14% Similarity=0.184 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHhHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10418 256 SALQKLRGQVDSLRDQMRLKEKELGYRNSDVDNLKRQIDRLTST-VRELRRKQRLSQVQVRGLIDERADFLAALQDH 331 (389)
Q Consensus 256 ~vm~kLKe~VdkQRdeiRak~~el~~k~~evEaLq~Q~~RL~~~-n~eLRrk~~~~q~Q~r~l~eekadl~a~lq~~ 331 (389)
.++..|+......+.++......++...-.+-+++.|++.|... ..|+.+=...+.++...+..+...+.+++.+.
T Consensus 288 ~~i~~L~~~l~~l~~~~~~l~~~y~~~hP~v~~l~~qi~~l~~~i~~e~~~~~~~~~~~~~~a~~~~~~L~~~l~~~ 364 (754)
T TIGR01005 288 DLIQRLRERQAELRATIADLSTTMLANHPRVVAAKSSLADLDAQIRSELQKITKSLLMQADAAQARESQLVSDVNQL 364 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666655555555555555555556666666666666542 44444444444444444444444444444433
No 146
>cd08318 Death_NMPP84 Death domain of Nuclear Matrix Protein P84. Death domain (DD) found in the Nuclear Matrix Protein P84 (also known as HPR1 or THOC1). HPR1/p84 resides in the nuclear matrix and is part of the THO complex, also called TREX (transcription/export) complex, which functions in mRNP biogenesis at the interface between transcription and export of mRNA from the nucleus. Mice lacking THOC1 have abnormal testis development and are sterile. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=39.61 E-value=40 Score=27.56 Aligned_cols=30 Identities=13% Similarity=0.234 Sum_probs=26.0
Q ss_pred ccCCchHHHHHHHHHHHHHHHHHHHHhhCc
Q psy10418 5 YSSTLTVIDVFDIASEIGKEFEKIIDQYGP 34 (389)
Q Consensus 5 ~~~~ltveDVydiA~~IG~EfErli~~~G~ 34 (389)
|+..||-+.++-||..||.+..+|...-|-
T Consensus 1 ~~~~~t~~~l~~ia~~iG~~Wk~Lar~LGl 30 (86)
T cd08318 1 QSKPVTGEQITVFANKLGEDWKTLAPHLEM 30 (86)
T ss_pred CCCCCCHHHHHHHHHHHhhhHHHHHHHcCC
Confidence 567899999999999999999999776554
No 147
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=39.29 E-value=9.9 Score=42.15 Aligned_cols=50 Identities=30% Similarity=0.414 Sum_probs=0.0
Q ss_pred ccHHHHHHHHHhhHHHHHHHHHHHHHHHhh-hhhHHHHHHHHHHhhhhhhc
Q psy10418 190 FTTAELKEILHDRNTLKTRLNELEEERQCF-KMVNRLQEENKKLSKRLEHE 239 (389)
Q Consensus 190 FTl~ELreVL~ERNELKa~vf~LqEEl~~~-~~V~qLqeeNk~L~~~ls~~ 239 (389)
....++..++.+|+.|..++..++..+..+ ..-..|+.+|..|...++..
T Consensus 176 ~~~~~l~~~~~e~d~l~q~~~el~~~i~~L~~e~~~L~~e~~~l~~~~~~~ 226 (713)
T PF05622_consen 176 RMYEELSRLVAERDELAQRCHELEKQISDLQEEKESLQSENEELQERLSQL 226 (713)
T ss_dssp ---------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhhhhhhhcccCCC
Confidence 355688999999999999988887777644 34455666777777666643
No 148
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=38.93 E-value=1.9e+02 Score=23.92 Aligned_cols=30 Identities=27% Similarity=0.474 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q psy10418 88 EESWKEETQQLVEMVNRLQEENKKLSKRLE 117 (389)
Q Consensus 88 Ed~~r~E~~eL~~~V~~LqeeN~~L~~~Ls 117 (389)
...|..++..|...+..|+++|..|...+.
T Consensus 70 ~~~l~~~i~~l~~ke~~l~~en~~L~~~~~ 99 (100)
T PF01486_consen 70 DQLLMEQIEELKKKERELEEENNQLRQKIE 99 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345778899999999999999999988764
No 149
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=38.45 E-value=6.1e+02 Score=28.41 Aligned_cols=31 Identities=16% Similarity=0.271 Sum_probs=15.2
Q ss_pred HHhHHHHHHhhhhhhhh----hhhHHHHHHHHHHH
Q psy10418 266 DSLRDQMRLKEKELGYR----NSDVDNLKRQIDRL 296 (389)
Q Consensus 266 dkQRdeiRak~~el~~k----~~evEaLq~Q~~RL 296 (389)
..|.-.++.+..++..+ +=.+-+|+.|+..|
T Consensus 317 ~~ql~~l~~~~~~l~~~~~~~hP~v~~l~~~~~~L 351 (726)
T PRK09841 317 DNQLNELTFREAEISQLYKKDHPTYRALLEKRQTL 351 (726)
T ss_pred HHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHH
Confidence 45555555555554332 22355666655443
No 150
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=38.30 E-value=5.6e+02 Score=27.89 Aligned_cols=59 Identities=20% Similarity=0.329 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy10418 94 ETQQLVEMVNRLQEENKKLSKRLEHEGSSPMKSQQLSPEIDISVLQKLRGQVDSLRDQMRLKEK 157 (389)
Q Consensus 94 E~~eL~~~V~~LqeeN~~L~~~Ls~~~~~~~~~~~~~~e~er~vm~kLKe~VdkQRDeiRake~ 157 (389)
....+...+.++.+.|+.|...+..-..+- .-++.|......+++.+......+..-..
T Consensus 311 ~~~~l~~~l~~~~e~~~~l~~Ei~~l~~sY-----~l~~~e~~~~~~lekeL~~Le~~~~~~~~ 369 (569)
T PRK04778 311 NSDTLPDFLEHAKEQNKELKEEIDRVKQSY-----TLNESELESVRQLEKQLESLEKQYDEITE 369 (569)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHcc-----ccCchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445677777888888888877777543321 01234667777777777777666654333
No 151
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=38.07 E-value=4.2e+02 Score=26.44 Aligned_cols=22 Identities=14% Similarity=0.231 Sum_probs=11.5
Q ss_pred HHHhhHHHHHHHHHHHHHHHhh
Q psy10418 198 ILHDRNTLKTRLNELEEERQCF 219 (389)
Q Consensus 198 VL~ERNELKa~vf~LqEEl~~~ 219 (389)
+-...+.+.+++..++.++..+
T Consensus 135 ~~~~~~~~~~~~~~l~~~i~~~ 156 (423)
T TIGR01843 135 FESRKSTLRAQLELILAQIKQL 156 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555566555433
No 152
>smart00338 BRLZ basic region leucin zipper.
Probab=37.86 E-value=1.1e+02 Score=23.43 Aligned_cols=36 Identities=31% Similarity=0.412 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy10418 81 EREVEEIEESWKEETQQLVEMVNRLQEENKKLSKRL 116 (389)
Q Consensus 81 ~~Ele~~Ed~~r~E~~eL~~~V~~LqeeN~~L~~~L 116 (389)
-.+|+.-...+..++.+|...|..|..++..|...+
T Consensus 28 ~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~~ 63 (65)
T smart00338 28 IEELERKVEQLEAENERLKKEIERLRRELEKLKSEL 63 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345666666777888888888888888888876654
No 153
>cd00068 GGL G protein gamma subunit-like motifs, the alpha-helical G-gamma chain dimerizes with the G-beta propeller subunit as part of the heterotrimeric G-protein complex; involved in signal transduction via G-protein-coupled receptors
Probab=37.74 E-value=62 Score=24.73 Aligned_cols=49 Identities=24% Similarity=0.492 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHhhH----HHHhhhhhhccccccCCCCCCCCCCCCCCCCCCCCcc
Q psy10418 330 DHQREVAALKQQLGL----AEKENEDLYNSQETTSEEERPVQGPLPYEPDDAPWKK 381 (389)
Q Consensus 330 ~~~~ei~~L~~~lg~----~~k~~~dl~~~~~~~~~~~~pvqgp~p~ep~~~pwk~ 381 (389)
...+++..||.+++. ..+.=+++.++-.+....|+-+.||.. ..-||.-
T Consensus 3 ~~~~~veqLr~el~~~RikvS~a~~~l~~y~e~~~~~Dpll~g~~~---~~NP~~~ 55 (57)
T cd00068 3 QLKKEVEQLRKELSRERLKVSKAAAELLKYCEQNAENDPLLTGPPS---PSNPWIE 55 (57)
T ss_pred HHHHHHHHHHHHHCCchhhHHHHHHHHHHHHHhcCCCCCCCCCCCC---CCCCCCC
Confidence 456778899999872 233345555532334468999999874 3488973
No 154
>KOG4687|consensus
Probab=37.56 E-value=4.8e+02 Score=26.88 Aligned_cols=36 Identities=25% Similarity=0.476 Sum_probs=26.7
Q ss_pred CCCCCCcccHHHHHHHHHhhHHHHHHHHHHHHHHHhhh
Q psy10418 183 DDPNRPRFTTAELKEILHDRNTLKTRLNELEEERQCFK 220 (389)
Q Consensus 183 ~dpnrPrFTl~ELreVL~ERNELKa~vf~LqEEl~~~~ 220 (389)
-||.+|| ...+--||-|--=|+++|.-..+|+...+
T Consensus 210 adkrhpr--~~DiDgll~ENkfLhaklkiadeElEliK 245 (389)
T KOG4687|consen 210 ADKRHPR--AEDIDGLLAENKFLHAKLKIADEELELIK 245 (389)
T ss_pred CCCCCch--hhhhHHHHHhhHHHHHHhcccHHHHHHHH
Confidence 3566666 34677788888888999988888887554
No 155
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=37.53 E-value=3.8e+02 Score=25.79 Aligned_cols=100 Identities=23% Similarity=0.376 Sum_probs=43.9
Q ss_pred HHHHHHHHHhhhhhhcCCCCCccCCCCchhhHHHHHHHHHHHHHhHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHhhHHH
Q psy10418 224 RLQEENKKLSKRLEHEGSSPMKSQQLSPEIDISALQKLRGQVDSLRDQMRLKEKELGYRNSDVDNLKRQIDRLTSTVREL 303 (389)
Q Consensus 224 qLqeeNk~L~~~ls~~~~~~~~~~e~~~~~d~~vm~kLKe~VdkQRdeiRak~~el~~k~~evEaLq~Q~~RL~~~n~eL 303 (389)
+|+.+|.+|.-.+.... +.=.+|.+-+-.-|+.+|--.+-+ .-..++-+-++-|...-..|
T Consensus 19 ~L~~en~kL~~~ve~~e---------------e~na~L~~e~~~L~~q~~s~Qqal----~~aK~l~eEledLk~~~~~l 79 (193)
T PF14662_consen 19 KLADENAKLQRSVETAE---------------EGNAQLAEEITDLRKQLKSLQQAL----QKAKALEEELEDLKTLAKSL 79 (193)
T ss_pred HHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
Confidence 56667777776666543 112234444444444444322111 11223333333333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy10418 304 RRKQRLSQVQVRGLIDERADFLAALQDHQREVAALKQQL 342 (389)
Q Consensus 304 Rrk~~~~q~Q~r~l~eekadl~a~lq~~~~ei~~L~~~l 342 (389)
=-..+-+.+|.|.+=.+..-|.|.+.+.+.+.+.+....
T Consensus 80 EE~~~~L~aq~rqlEkE~q~L~~~i~~Lqeen~kl~~e~ 118 (193)
T PF14662_consen 80 EEENRSLLAQARQLEKEQQSLVAEIETLQEENGKLLAER 118 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhh
Confidence 333444444444444444455554444444444444444
No 156
>smart00224 GGL G protein gamma subunit-like motifs.
Probab=37.26 E-value=61 Score=25.27 Aligned_cols=47 Identities=28% Similarity=0.512 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHhhH----HHHhhhhhhcccccc--CCCCCCCCCCCCCCCCCCCCcc
Q psy10418 330 DHQREVAALKQQLGL----AEKENEDLYNSQETT--SEEERPVQGPLPYEPDDAPWKK 381 (389)
Q Consensus 330 ~~~~ei~~L~~~lg~----~~k~~~dl~~~~~~~--~~~~~pvqgp~p~ep~~~pwk~ 381 (389)
...+++..||.+++. ..+.=+++.+ |+. ...|+-+.||.| ..-||.-
T Consensus 3 ~~~~~ve~Lr~el~~~RikvS~a~~~li~--y~e~~~~~DP~l~g~~~---~~NP~~~ 55 (63)
T smart00224 3 QLRKEVEQLRKELSRERIKVSKAAEELLA--YCEQHAEEDPLLTGPPP---SKNPFIE 55 (63)
T ss_pred HHHHHHHHHHHHHCCceehHHHHHHHHHH--HHHcCCCCCCCcCCCCC---CCCCCCC
Confidence 456788999999972 3333445544 444 466888999875 4488974
No 157
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=36.54 E-value=4.7e+02 Score=28.63 Aligned_cols=87 Identities=20% Similarity=0.242 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHhHHHHHHhhhhhhhhhhhHHHHHHHHHH---HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10418 256 SALQKLRGQVDSLRDQMRLKEKELGYRNSDVDNLKRQIDR---LTSTVRELRRKQRLSQVQVRGLIDERADFLAALQDHQ 332 (389)
Q Consensus 256 ~vm~kLKe~VdkQRdeiRak~~el~~k~~evEaLq~Q~~R---L~~~n~eLRrk~~~~q~Q~r~l~eekadl~a~lq~~~ 332 (389)
+||.+||.+-.+|--.|--..+-=...-.-|+.||..+-| |.-|-..|+.++.-+=-=-=..+=||.|+..-||..|
T Consensus 317 EvL~kLk~tn~kQq~~IqdLq~sN~yLe~kvkeLQ~k~~kQqvfvDiinkLk~niEeLIedKY~viLEKnd~~k~lqnLq 396 (527)
T PF15066_consen 317 EVLQKLKHTNRKQQNRIQDLQCSNLYLEKKVKELQMKITKQQVFVDIINKLKENIEELIEDKYRVILEKNDIEKTLQNLQ 396 (527)
T ss_pred HHHHHHHhhhHHHHHHHHHhhhccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhHhHhhhhhhhHHHHHHHHH
Confidence 7899999999999877654333333333347778876654 4444445555543221111111223445555555555
Q ss_pred HHHHHHHHHh
Q psy10418 333 REVAALKQQL 342 (389)
Q Consensus 333 ~ei~~L~~~l 342 (389)
.-++.-++.|
T Consensus 397 e~la~tqk~L 406 (527)
T PF15066_consen 397 EALANTQKHL 406 (527)
T ss_pred HHHHHHHHHH
Confidence 5444444444
No 158
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=36.31 E-value=1.7e+02 Score=32.57 Aligned_cols=21 Identities=24% Similarity=0.335 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHhHHHHHHh
Q psy10418 255 ISALQKLRGQVDSLRDQMRLK 275 (389)
Q Consensus 255 ~~vm~kLKe~VdkQRdeiRak 275 (389)
...|..|+.=....+..|+..
T Consensus 565 ~~~l~~L~~En~~L~~~l~~l 585 (722)
T PF05557_consen 565 KSTLEALQAENEDLLARLRSL 585 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 367777777777766666544
No 159
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=35.69 E-value=3.4e+02 Score=24.67 Aligned_cols=60 Identities=23% Similarity=0.330 Sum_probs=43.6
Q ss_pred hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy10418 284 SDVDNLKRQIDRLTSTVRELRRKQRLSQVQVRGLIDERADFLAALQDHQREVAALKQQLG 343 (389)
Q Consensus 284 ~evEaLq~Q~~RL~~~n~eLRrk~~~~q~Q~r~l~eekadl~a~lq~~~~ei~~L~~~lg 343 (389)
.|.|+-+.-+..|..--..+.....-+..-+.++..+|.++...+|..+..|..|-...+
T Consensus 45 ~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE~~~~ 104 (140)
T PF10473_consen 45 LDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENLDKELQKKQEKVSELESLNS 104 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 344555666666666666666677777888888888888888888888888777765553
No 160
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=35.49 E-value=1.5e+02 Score=25.31 Aligned_cols=66 Identities=20% Similarity=0.324 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHhHHHHHHhhhhhhhh--hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q psy10418 256 SALQKLRGQVDSLRDQMRLKEKELGYR--NSDVDNLKRQIDRLTSTVRELRRKQRLSQVQVRGLIDER 321 (389)
Q Consensus 256 ~vm~kLKe~VdkQRdeiRak~~el~~k--~~evEaLq~Q~~RL~~~n~eLRrk~~~~q~Q~r~l~eek 321 (389)
.=+.+|.+.++...+.+-+-+.++... ..|+-+|+-.+.++..-.+.++.+...+..|..-|+|.+
T Consensus 35 ~~~~~l~~~~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v~~~~~lLlE~~ 102 (106)
T PF10805_consen 35 EDIEKLEERLDEHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGVSHQLDLLLENE 102 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666677777777777777776 667777777777777777777777777777777777754
No 161
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=35.46 E-value=2.1e+02 Score=31.91 Aligned_cols=55 Identities=18% Similarity=0.186 Sum_probs=31.0
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy10418 289 LKRQIDRLTSTVRELRRKQRLSQVQV------------RGLIDERADFLAALQDHQREVAALKQQLG 343 (389)
Q Consensus 289 Lq~Q~~RL~~~n~eLRrk~~~~q~Q~------------r~l~eekadl~a~lq~~~~ei~~L~~~lg 343 (389)
-+..++.|..=|++|+.+++.+..-. -....+.++|.+.+...++-+..|+.=++
T Consensus 564 k~~~l~~L~~En~~L~~~l~~le~~~~~~~~~~p~~~~~~~~~e~~~l~~~~~~~ekr~~RLkevf~ 630 (722)
T PF05557_consen 564 KKSTLEALQAENEDLLARLRSLEEGNSQPVDAVPTSSLESQEKEIAELKAELASAEKRNQRLKEVFK 630 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTTT----------------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccCCCCCcccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45778888888888888885553211 11222345555555555555555554443
No 162
>KOG0976|consensus
Probab=35.30 E-value=8.1e+02 Score=28.91 Aligned_cols=21 Identities=33% Similarity=0.333 Sum_probs=13.7
Q ss_pred HHHHHHHhhHHHHHHHHHHHH
Q psy10418 194 ELKEILHDRNTLKTRLNELEE 214 (389)
Q Consensus 194 ELreVL~ERNELKa~vf~LqE 214 (389)
++...+.|=|+++.++|.+=+
T Consensus 184 q~~tkl~e~~~en~~le~k~~ 204 (1265)
T KOG0976|consen 184 EFQTKLAEANREKKALEEKLE 204 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 566667777777777665543
No 163
>KOG0964|consensus
Probab=34.47 E-value=8.9e+02 Score=29.09 Aligned_cols=86 Identities=17% Similarity=0.269 Sum_probs=40.8
Q ss_pred HHHHHHHHHHhHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10418 258 LQKLRGQVDSLRDQMRLKEKELGYRNSDVDNLKRQIDRLTSTVRELRRKQRLSQVQVRGLIDERADFLAALQDHQREVAA 337 (389)
Q Consensus 258 m~kLKe~VdkQRdeiRak~~el~~k~~evEaLq~Q~~RL~~~n~eLRrk~~~~q~Q~r~l~eekadl~a~lq~~~~ei~~ 337 (389)
+.+|+..++.--...-++..|+.....+.++.-+++.-|...-.|.+-+..-+-+-.-++-+++.++...-+..=+|=.+
T Consensus 399 i~~l~~~i~~~ke~e~~lq~e~~~~e~~l~~~~e~i~~l~~si~e~~~r~~~~~~~~~~~k~~~del~~~Rk~lWREE~~ 478 (1200)
T KOG0964|consen 399 IEKLKRGINDTKEQENILQKEIEDLESELKEKLEEIKELESSINETKGRMEEFDAENTELKRELDELQDKRKELWREEKK 478 (1200)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666666544444444455555555555555555555544444444444444444444444444444444433344444
Q ss_pred HHHHhh
Q psy10418 338 LKQQLG 343 (389)
Q Consensus 338 L~~~lg 343 (389)
|+.-++
T Consensus 479 l~~~i~ 484 (1200)
T KOG0964|consen 479 LRSLIA 484 (1200)
T ss_pred HHHHHH
Confidence 444333
No 164
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=33.97 E-value=4.2e+02 Score=25.15 Aligned_cols=140 Identities=21% Similarity=0.298 Sum_probs=78.1
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHhh--------hhhHHHHHHHHHHhhhhhhcCCCCCccCCCCchhhHHHHHHH---H
Q psy10418 194 ELKEILHDRNTLKTRLNELEEERQCF--------KMVNRLQEENKKLSKRLEHEGSSPMKSQQLSPEIDISALQKL---R 262 (389)
Q Consensus 194 ELreVL~ERNELKa~vf~LqEEl~~~--------~~V~qLqeeNk~L~~~ls~~~~~~~~~~e~~~~~d~~vm~kL---K 262 (389)
++.++..|=--||.--+-..-.|..| +.+.+-.+|.+.|...+.... +..+.+=.+| -
T Consensus 27 ~l~~l~~ENk~Lk~lq~Rq~kAL~k~e~~e~~Lpqll~~h~eEvr~Lr~~LR~~q-----------~~~r~~~~klk~~~ 95 (194)
T PF15619_consen 27 KLQELRKENKTLKQLQKRQEKALQKYEDTEAELPQLLQRHNEEVRVLRERLRKSQ-----------EQERELERKLKDKD 95 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHH
Confidence 44455555555555555555566666 344555567777777776543 1223333333 3
Q ss_pred HHHHHhHHHHHHhhhhhhhhhh-hHHHHHHHHHHHHHhhHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHH
Q psy10418 263 GQVDSLRDQMRLKEKELGYRNS-DVDNLKRQIDRLTSTVRELRRKQRLSQVQV-----------RGLIDERADFLAALQD 330 (389)
Q Consensus 263 e~VdkQRdeiRak~~el~~k~~-evEaLq~Q~~RL~~~n~eLRrk~~~~q~Q~-----------r~l~eekadl~a~lq~ 330 (389)
.-+-+.+|+|+....-...++- +.+.|+.+++.+...-.+-=++...+..|+ .+-...-.++.+.++.
T Consensus 96 ~el~k~~~~l~~L~~L~~dknL~eReeL~~kL~~~~~~l~~~~~ki~~Lek~leL~~k~~~rql~~e~kK~~~~~~~~~~ 175 (194)
T PF15619_consen 96 EELLKTKDELKHLKKLSEDKNLAEREELQRKLSQLEQKLQEKEKKIQELEKQLELENKSFRRQLASEKKKHKEAQEEVKS 175 (194)
T ss_pred HHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455677777775555554554 467777777777665555444444444443 3333334466666666
Q ss_pred HHHHHHHHHHHhhH
Q psy10418 331 HQREVAALKQQLGL 344 (389)
Q Consensus 331 ~~~ei~~L~~~lg~ 344 (389)
.+.+|..|++.|-.
T Consensus 176 l~~ei~~L~~klkE 189 (194)
T PF15619_consen 176 LQEEIQRLNQKLKE 189 (194)
T ss_pred HHHHHHHHHHHHHH
Confidence 66677766666543
No 165
>KOG4807|consensus
Probab=33.65 E-value=5.4e+02 Score=27.74 Aligned_cols=89 Identities=24% Similarity=0.384 Sum_probs=0.0
Q ss_pred hHHHhhhhhhH--HHHhHHHHHHHHHHHHHHH---HHHHHHHHHHHHH----HHHHHHhhhhhhcCCC-CCccCCCCchH
Q psy10418 64 KLQELGDHISK--LEHEKLEREVEEIEESWKE---ETQQLVEMVNRLQ----EENKKLSKRLEHEGSS-PMKSQQLSPEI 133 (389)
Q Consensus 64 ~~e~L~~~~~q--le~Ek~~~Ele~~Ed~~r~---E~~eL~~~V~~Lq----eeN~~L~~~Ls~~~~~-~~~~~~~~~e~ 133 (389)
+++-|..+-.| |+.--+-+-++.-+..++. |+.+|......|- ++.-+|.+.+.+.++. ..+-.++-...
T Consensus 429 ELeVLSEQYSQKCLEnahLaqalEaerqaLRqCQrEnQELnaHNQELnnRLaaEItrLRtlltgdGgGtGsplaqgkday 508 (593)
T KOG4807|consen 429 ELEVLSEQYSQKCLENAHLAQALEAERQALRQCQRENQELNAHNQELNNRLAAEITRLRTLLTGDGGGTGSPLAQGKDAY 508 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHhccCCCCCCCccccCcchh
Q ss_pred HHHHHHHHHHH--------HHHHHHHH
Q psy10418 134 DISVLQKLRGQ--------VDSLRDQM 152 (389)
Q Consensus 134 er~vm~kLKe~--------VdkQRDei 152 (389)
|.+||++.||. |..++|||
T Consensus 509 ELEVLLRVKEsEiQYLKqEissLkDEL 535 (593)
T KOG4807|consen 509 ELEVLLRVKESEIQYLKQEISSLKDEL 535 (593)
T ss_pred hHHHHHHhhHHHHHHHHHHHHHHHHHH
No 166
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=33.21 E-value=2.1e+02 Score=27.60 Aligned_cols=51 Identities=29% Similarity=0.386 Sum_probs=0.0
Q ss_pred HHhhhhhhHHHHhHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy10418 66 QELGDHISKLEHEKL---------EREVEEIEESWKEETQQLVEMVNRLQEENKKLSKRL 116 (389)
Q Consensus 66 e~L~~~~~qle~Ek~---------~~Ele~~Ed~~r~E~~eL~~~V~~LqeeN~~L~~~L 116 (389)
++|-..+.+.|.||. -+++-......=.|++.|..-..+|+++|+.|...+
T Consensus 19 eel~~rLR~~E~ek~~~m~~~g~lm~evNrrlQ~hl~EIR~LKe~NqkLqedNqELRdLC 78 (195)
T PF10226_consen 19 EELVRRLRRAEAEKMSLMVEHGRLMKEVNRRLQQHLNEIRGLKEVNQKLQEDNQELRDLC 78 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 167
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=32.89 E-value=3.5e+02 Score=25.80 Aligned_cols=89 Identities=20% Similarity=0.313 Sum_probs=0.0
Q ss_pred HHHhhCcchhhchhhHHHHHHHhHHHHhccccccchhHHHhhhhhhHHHHhHHHHHHHHHHHHHHH---HHHHHHHHHHH
Q psy10418 28 IIDQYGPDAVTSIMPKVIVALEHLECLASKNERENTKLQELGDHISKLEHEKLEREVEEIEESWKE---ETQQLVEMVNR 104 (389)
Q Consensus 28 li~~~G~d~V~~LmpkVV~vLElLEs~~~~~~~e~~~~e~L~~~~~qle~Ek~~~Ele~~Ed~~r~---E~~eL~~~V~~ 104 (389)
|..+||+.+-.--.--+..++..|+.....-..+-..+-.-| +......-.+|..++..|.. .+-++..-+..
T Consensus 125 Ll~~~g~naW~~~n~~Le~~~~~le~~l~~~k~~ie~vN~~R----K~~Q~~~~~~L~~Le~~W~~~v~kn~eie~a~~~ 200 (221)
T PF05700_consen 125 LLSKYGENAWLIHNEQLEAMLKRLEKELAKLKKEIEEVNRER----KRRQEEAGEELRYLEQRWKELVSKNLEIEVACEE 200 (221)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHhhhhhhcC
Q psy10418 105 LQEENKKLSKRLEHEG 120 (389)
Q Consensus 105 LqeeN~~L~~~Ls~~~ 120 (389)
|+.+..+|........
T Consensus 201 Le~ei~~l~~~~~~~~ 216 (221)
T PF05700_consen 201 LEQEIEQLKRKAAELK 216 (221)
T ss_pred HHHHHHHHHHHHHHHh
No 168
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=32.49 E-value=5.1e+02 Score=29.41 Aligned_cols=90 Identities=14% Similarity=0.207 Sum_probs=42.5
Q ss_pred HHHHHHHhHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHhhHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10418 261 LRGQVDSLRDQMRLKEKELGYRNSDVDNLKRQIDRLTSTVRELRRKQRLS----QVQVRGLIDERADFLAALQDHQREVA 336 (389)
Q Consensus 261 LKe~VdkQRdeiRak~~el~~k~~evEaLq~Q~~RL~~~n~eLRrk~~~~----q~Q~r~l~eekadl~a~lq~~~~ei~ 336 (389)
|+...++|-++|.....+....+...+.|.+.+++....-+.|..|...+ +.+..-+.+---+|-..|+.-...+.
T Consensus 570 Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~~vl~~l~~~~P~LS~AEr~~~~EL~~~~~~l~ 649 (717)
T PF10168_consen 570 LKQQKEQQLKELQELQEERKSLRESAEKLAERYEEAKDKQEKLMKRVDRVLQLLNSQLPVLSEAEREFKKELERMKDQLQ 649 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444444444444444444444444322 33333344434555556666666666
Q ss_pred HHHHHhh-HHHHhhh
Q psy10418 337 ALKQQLG-LAEKENE 350 (389)
Q Consensus 337 ~L~~~lg-~~~k~~~ 350 (389)
.|+.++. +..|.+.
T Consensus 650 ~l~~si~~lk~k~~~ 664 (717)
T PF10168_consen 650 DLKASIEQLKKKLDY 664 (717)
T ss_pred HHHHHHHHHHHHHHH
Confidence 6666665 4333333
No 169
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=32.26 E-value=3.9e+02 Score=24.28 Aligned_cols=122 Identities=17% Similarity=0.351 Sum_probs=63.6
Q ss_pred hHHHHHHHHHHhhhhhhcCCCCCccCCCCchhhHHHHHHHHHHHHH-------hHHHHHHhhhhhhhhhhhHHHHHHHHH
Q psy10418 222 VNRLQEENKKLSKRLEHEGSSPMKSQQLSPEIDISALQKLRGQVDS-------LRDQMRLKEKELGYRNSDVDNLKRQID 294 (389)
Q Consensus 222 V~qLqeeNk~L~~~ls~~~~~~~~~~e~~~~~d~~vm~kLKe~Vdk-------QRdeiRak~~el~~k~~evEaLq~Q~~ 294 (389)
.-||+.+|..|...+.....+ +...-........+|-..|+...- .+.+|..+...+.....++..+..+-+
T Consensus 44 FeqLkien~~l~~kIeERn~e-L~~Lk~~~~~~v~~L~h~keKl~~~~~~~~~l~~~l~~~~~~~~~~r~~l~~~k~~r~ 122 (177)
T PF13870_consen 44 FEQLKIENQQLNEKIEERNKE-LLKLKKKIGKTVQILTHVKEKLHFLSEELERLKQELKDREEELAKLREELYRVKKERD 122 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346788888888888755310 000001122344555555555544 444455555555555555555555555
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q psy10418 295 RLTSTVRELRRKQRLSQVQVRGLIDERADFLAALQDHQREVAALKQQLGLAE 346 (389)
Q Consensus 295 RL~~~n~eLRrk~~~~q~Q~r~l~eekadl~a~lq~~~~ei~~L~~~lg~~~ 346 (389)
++.+.|.+|+.+.+.+. ..++..-=....+.+....+.|..++..+..++
T Consensus 123 k~~~~~~~l~~~~~~~~--~P~ll~Dy~~~~~~~~~l~~~i~~l~rk~~~l~ 172 (177)
T PF13870_consen 123 KLRKQNKKLRQQGGLLG--VPALLRDYDKTKEEVEELRKEIKELERKVEILE 172 (177)
T ss_pred HHHHHHHHHHHhcCCCC--CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555542 233433333344455566666777776666443
No 170
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=32.21 E-value=4e+02 Score=28.20 Aligned_cols=53 Identities=26% Similarity=0.330 Sum_probs=37.0
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-HHHHhhhhhhc
Q psy10418 292 QIDRLTSTVRELRRKQRLSQVQVRGLIDERADFLAALQDHQREVAALKQQLG-LAEKENEDLYN 354 (389)
Q Consensus 292 Q~~RL~~~n~eLRrk~~~~q~Q~r~l~eekadl~a~lq~~~~ei~~L~~~lg-~~~k~~~dl~~ 354 (389)
.+.-+.....|-|-|+..+..|+--+. +-.+.||..|++.|. +.+|..+....
T Consensus 245 e~~~~~~~LqEEr~R~erLEeqlNd~~----------elHq~Ei~~LKqeLa~~EEK~~Yqs~e 298 (395)
T PF10267_consen 245 EYQFILEALQEERYRYERLEEQLNDLT----------ELHQNEIYNLKQELASMEEKMAYQSYE 298 (395)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 444566666777777777777766554 457889999999997 77776555443
No 171
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=31.99 E-value=1.7e+02 Score=22.26 Aligned_cols=35 Identities=26% Similarity=0.360 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy10418 81 EREVEEIEESWKEETQQLVEMVNRLQEENKKLSKR 115 (389)
Q Consensus 81 ~~Ele~~Ed~~r~E~~eL~~~V~~LqeeN~~L~~~ 115 (389)
-.+|+.-...+..++..|...+..|..++..|...
T Consensus 28 ~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~e 62 (64)
T PF00170_consen 28 IEELEEKVEELESENEELKKELEQLKKEIQSLKSE 62 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44666666677778888888888888877777654
No 172
>smart00338 BRLZ basic region leucin zipper.
Probab=31.88 E-value=1.5e+02 Score=22.66 Aligned_cols=34 Identities=15% Similarity=0.399 Sum_probs=25.1
Q ss_pred hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q psy10418 285 DVDNLKRQIDRLTSTVRELRRKQRLSQVQVRGLI 318 (389)
Q Consensus 285 evEaLq~Q~~RL~~~n~eLRrk~~~~q~Q~r~l~ 318 (389)
-+..|..++.-|..-|.+|+.++..+..++..|-
T Consensus 27 ~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk 60 (65)
T smart00338 27 EIEELERKVEQLEAENERLKKEIERLRRELEKLK 60 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3677777777788888888877777777766654
No 173
>PF03670 UPF0184: Uncharacterised protein family (UPF0184); InterPro: IPR022788 This family of proteins has no known function.
Probab=31.84 E-value=2.5e+02 Score=23.62 Aligned_cols=44 Identities=14% Similarity=0.319 Sum_probs=25.0
Q ss_pred hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10418 285 DVDNLKRQIDRLTSTVRELRRKQRLSQVQVRGLIDERADFLAAL 328 (389)
Q Consensus 285 evEaLq~Q~~RL~~~n~eLRrk~~~~q~Q~r~l~eekadl~a~l 328 (389)
+..++..++++|-...--|=.|...+.++++.|++--.+....+
T Consensus 27 E~~~ins~LD~Lns~LD~LE~rnD~l~~~L~~LLesnrq~R~e~ 70 (83)
T PF03670_consen 27 EYAAINSMLDQLNSCLDHLEQRNDHLHAQLQELLESNRQIRLEF 70 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555666666666666665544433333
No 174
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=31.71 E-value=3.6e+02 Score=23.68 Aligned_cols=67 Identities=12% Similarity=0.160 Sum_probs=40.0
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy10418 276 EKELGYRNSDVDNLKRQIDRLTSTVRELRRKQRLSQVQVRGLIDERADFLAALQDHQREVAALKQQL 342 (389)
Q Consensus 276 ~~el~~k~~evEaLq~Q~~RL~~~n~eLRrk~~~~q~Q~r~l~eekadl~a~lq~~~~ei~~L~~~l 342 (389)
...+.....+++.+-.++..|..-|=.+.-++.-..+++.....+-..+........++...+...+
T Consensus 26 l~~~~~~~~~~~~l~~~n~~lAe~nL~~~~~l~~~r~~l~~~~~~~~~L~~~~~~k~~~~~~l~~~~ 92 (150)
T PF07200_consen 26 LPQVQELQQEREELLAENEELAEQNLSLEPELEELRSQLQELYEELKELESEYQEKEQQQDELSSNY 92 (150)
T ss_dssp GS--HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 3344455556677777777777777666666666667777777777777777777666665555443
No 175
>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export [].
Probab=31.64 E-value=3.1e+02 Score=22.97 Aligned_cols=85 Identities=24% Similarity=0.374 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHHHHHHhhCcchhhchhhHHHHHHHhHHHHhccccccc--------hhHHHhhhhhhHHHHhHHHHHHH
Q psy10418 14 VFDIASEIGKEFEKIIDQYGPDAVTSIMPKVIVALEHLECLASKNEREN--------TKLQELGDHISKLEHEKLEREVE 85 (389)
Q Consensus 14 VydiA~~IG~EfErli~~~G~d~V~~LmpkVV~vLElLEs~~~~~~~e~--------~~~e~L~~~~~qle~Ek~~~Ele 85 (389)
|-.+-..+-+||+.|+..+ .|+.-|.-||.++.....-. .....|.. +.-+.
T Consensus 12 ~~~l~~~~~~Ef~~I~~Er----------~v~~kLneLd~Li~eA~~r~~~~~~~~~~~~~~l~P----------~~~i~ 71 (109)
T PF03980_consen 12 IEFLEENCKKEFEEILEER----------DVVEKLNELDKLIEEAKERKNSGEREKPVWRHSLTP----------EEDIR 71 (109)
T ss_pred HHHHHHHHHHHHHHHHHHh----------hHHHHHHHHHHHHHHHHHhHhccccCCCCCCCCCCh----------HHHHH
Confidence 3456678889999999864 36777888888887432100 00011110 11111
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q psy10418 86 -EIEESWKEETQQLVEMVNRLQEENKKLSKRLEH 118 (389)
Q Consensus 86 -~~Ed~~r~E~~eL~~~V~~LqeeN~~L~~~Ls~ 118 (389)
-+-.........|...+..++.+|..|...+..
T Consensus 72 a~l~~~~~~~~~~L~~~l~~l~~eN~~L~~~i~~ 105 (109)
T PF03980_consen 72 AHLAPYKKKEREQLNARLQELEEENEALAEEIQE 105 (109)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 122334556677888888888888888887764
No 176
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=31.20 E-value=5.6e+02 Score=25.79 Aligned_cols=34 Identities=3% Similarity=0.094 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCC
Q psy10418 91 WKEETQQLVEMVNRLQEENKKLSKRLEHEGSSPM 124 (389)
Q Consensus 91 ~r~E~~eL~~~V~~LqeeN~~L~~~Ls~~~~~~~ 124 (389)
|+--|++|...|..-+.--+.+-.......++.+
T Consensus 73 y~~~c~EL~~~I~egr~~~~~~E~~~~~~nPpLf 106 (325)
T PF08317_consen 73 YQFSCRELKKYISEGRQIFEEIEEETYESNPPLF 106 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHH
Confidence 3445667777777666666666666665555543
No 177
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=31.02 E-value=5.3e+02 Score=25.44 Aligned_cols=53 Identities=26% Similarity=0.336 Sum_probs=43.2
Q ss_pred HHHHHHHhHHHHHHhhhhhhhhh----hhHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q psy10418 261 LRGQVDSLRDQMRLKEKELGYRN----SDVDNLKRQIDRLTSTVRELRRKQRLSQVQ 313 (389)
Q Consensus 261 LKe~VdkQRdeiRak~~el~~k~----~evEaLq~Q~~RL~~~n~eLRrk~~~~q~Q 313 (389)
|=.+|-+|||..|.+..||..-. ..+..|+..++.|..=|-.|=-|.+.+|.=
T Consensus 80 iLpIVtsQRDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLYEKiRylqSY 136 (248)
T PF08172_consen 80 ILPIVTSQRDRFRQRNAELEEELRKQQQTISSLRREVESLRADNVKLYEKIRYLQSY 136 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 34678889999998877776544 468899999999999999999999988753
No 178
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=30.91 E-value=7e+02 Score=26.82 Aligned_cols=54 Identities=20% Similarity=0.235 Sum_probs=36.8
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy10418 290 KRQIDRLTSTVRELRRKQRLSQVQVRGLIDERADFLAALQDHQREVAALKQQLG 343 (389)
Q Consensus 290 q~Q~~RL~~~n~eLRrk~~~~q~Q~r~l~eekadl~a~lq~~~~ei~~L~~~lg 343 (389)
+.+...+...-.|+++.+.-+..---.+...++.+...++++..||..|+..|.
T Consensus 326 ~~~~~~~~~~e~e~~l~~~el~~~~ee~~~~~s~~~~k~~~ke~E~q~lr~~l~ 379 (511)
T PF09787_consen 326 SQQLEPELTTEAELRLYYQELYHYREELSRQKSPLQLKLKEKESEIQKLRNQLS 379 (511)
T ss_pred HHHHHHHhchHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHH
Confidence 333333333345555555555555566677788889999999999999998886
No 179
>KOG2129|consensus
Probab=30.83 E-value=7.3e+02 Score=26.99 Aligned_cols=65 Identities=20% Similarity=0.296 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhcCCC--CC---c----cCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy10418 95 TQQLVEMVNRLQEENKKLSKRLEHEGSS--PM---K----SQQLSPEIDISVLQKLRGQVDSLRDQMRLKEKEL 159 (389)
Q Consensus 95 ~~eL~~~V~~LqeeN~~L~~~Ls~~~~~--~~---~----~~~~~~e~er~vm~kLKe~VdkQRDeiRake~eL 159 (389)
...|+.++.+|+.|.+-|...+-...+. .+ . ..-..++-+.-...+|+--|.+.|..+++-.++-
T Consensus 203 vN~LwKrmdkLe~ekr~Lq~KlDqpvs~p~~prdia~~~~~~gD~a~~~~~hi~~l~~EveRlrt~l~~Aqk~~ 276 (552)
T KOG2129|consen 203 VNSLWKRMDKLEQEKRYLQKKLDQPVSTPSLPRDIAKIPDVHGDEAAAEKLHIDKLQAEVERLRTYLSRAQKSY 276 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCcccCCCchhhhhcCccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678999999999999999888432221 11 1 1222344577788899999999999999755443
No 180
>PRK08032 fliD flagellar capping protein; Reviewed
Probab=30.80 E-value=5e+02 Score=27.57 Aligned_cols=99 Identities=13% Similarity=0.180 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHHHHHhhCcc-hhhchhhHHHHHHHhHHHHhccccccchhHHHhhhhhhHHH--HhHHHHHHHHHHHHH
Q psy10418 15 FDIASEIGKEFEKIIDQYGPD-AVTSIMPKVIVALEHLECLASKNERENTKLQELGDHISKLE--HEKLEREVEEIEESW 91 (389)
Q Consensus 15 ydiA~~IG~EfErli~~~G~d-~V~~LmpkVV~vLElLEs~~~~~~~e~~~~e~L~~~~~qle--~Ek~~~Ele~~Ed~~ 91 (389)
..+...|-..++.+-.-|+.+ ...|++ .++-..|+.++..+..=......|...+..++ .+.++..++..++.+
T Consensus 360 ~kl~~al~~np~~V~~lF~~~~~~~G~~---~~l~~~l~~~~~~~G~l~~~~~~l~~~i~~l~~~i~~~~~rl~~~e~rl 436 (462)
T PRK08032 360 DKLTKALKEDPAGVKALFVGDGKKTGIT---TQIATNLKSWLSTTGIIKTATDGVNKTLKKLTKQYNAVSDSIDATIARY 436 (462)
T ss_pred HHHHHHHHHCHHHHHHHhCCCCCCCcHH---HHHHHHHHHHHcCCccchhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666666666666666433 234554 45556666666644211122334444444443 344466777778888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhh
Q psy10418 92 KEETQQLVEMVNRLQEENKKLSKRL 116 (389)
Q Consensus 92 r~E~~eL~~~V~~LqeeN~~L~~~L 116 (389)
+..--.|...+++++.....|..++
T Consensus 437 ~~qF~ame~~~s~mns~~s~L~~q~ 461 (462)
T PRK08032 437 KAQFTQLDKLMTSLNSTSSYLTQQF 461 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 8777778888888887777776654
No 181
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=30.78 E-value=6.6e+02 Score=28.35 Aligned_cols=67 Identities=25% Similarity=0.459 Sum_probs=37.5
Q ss_pred HhhhhhHHHHHHHHHHhhhhhhcCCCCCccCCCCchhhHHHHHHHHHHHHHhHHHHHHhhhhhhhhhhhHHHHHHHHHHH
Q psy10418 217 QCFKMVNRLQEENKKLSKRLEHEGSSPMKSQQLSPEIDISALQKLRGQVDSLRDQMRLKEKELGYRNSDVDNLKRQIDRL 296 (389)
Q Consensus 217 ~~~~~V~qLqeeNk~L~~~ls~~~~~~~~~~e~~~~~d~~vm~kLKe~VdkQRdeiRak~~el~~k~~evEaLq~Q~~RL 296 (389)
.|=..|.+|+++|+.|...+..-. ..+.+|+.-.+ .++...+.=..++.+++++..-+.+|
T Consensus 426 ~~~~~ve~l~~e~~~L~~~~ee~k---------------~eie~L~~~l~----~~~r~~~~~~~~~rei~~~~~~I~~L 486 (652)
T COG2433 426 KLEETVERLEEENSELKRELEELK---------------REIEKLESELE----RFRREVRDKVRKDREIRARDRRIERL 486 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHH----HHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 344677777778877775544321 22333444443 34444444445666777777777777
Q ss_pred HHhhHH
Q psy10418 297 TSTVRE 302 (389)
Q Consensus 297 ~~~n~e 302 (389)
.+-..|
T Consensus 487 ~~~L~e 492 (652)
T COG2433 487 EKELEE 492 (652)
T ss_pred HHHHHH
Confidence 654444
No 182
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=30.14 E-value=5.7e+02 Score=25.59 Aligned_cols=148 Identities=17% Similarity=0.223 Sum_probs=0.0
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh------hcCCCCCccCCCCchHHHHHHHHHHHHHHHHH
Q psy10418 76 EHEKLEREVEEIEESWKEETQQLVEMVNRLQEENKKLSKRLE------HEGSSPMKSQQLSPEIDISVLQKLRGQVDSLR 149 (389)
Q Consensus 76 e~Ek~~~Ele~~Ed~~r~E~~eL~~~V~~LqeeN~~L~~~Ls------~~~~~~~~~~~~~~e~er~vm~kLKe~VdkQR 149 (389)
..+.++.+|...+.........|+.++..|..........++ ...-|.-.-+-. ..+..|+.+-|.|+
T Consensus 64 ~l~~ak~eLqe~eek~e~~l~~Lq~ql~~l~akI~k~~~el~~L~TYkD~EYPvK~vqIa------~L~rqlq~lk~~qq 137 (258)
T PF15397_consen 64 QLQQAKAELQEWEEKEESKLSKLQQQLEQLDAKIQKTQEELNFLSTYKDHEYPVKAVQIA------NLVRQLQQLKDSQQ 137 (258)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHH------HHHHHHHHHHHHHH
Q ss_pred HHHHHHHhhhhcccccCCCCCCcccccccccCCCCCCCCcccHHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhHHHHHHH
Q psy10418 150 DQMRLKEKELGYRNSDVDNSDIPDLSNKAVYDLDDPNRPRFTTAELKEILHDRNTLKTRLNELEEERQCFKMVNRLQEEN 229 (389)
Q Consensus 150 DeiRake~eL~~k~~dve~l~~~~L~~~~~~d~~dpnrPrFTl~ELreVL~ERNELKa~vf~LqEEl~~~~~V~qLqeeN 229 (389)
||+=.-..-+. .+++.|.. +.+...
T Consensus 138 dEldel~e~~~-----------------------------------------------------~el~~l~~--~~q~k~ 162 (258)
T PF15397_consen 138 DELDELNEMRQ-----------------------------------------------------MELASLSR--KIQEKK 162 (258)
T ss_pred HHHHHHHHHHH-----------------------------------------------------HHHHHHHH--HHHHHH
Q ss_pred HHHhhhhhhcCCCCCccCCCCchhhHHHHHHHHHHH------HHhHHHHHHhhhhhhhhhhhHHHHHHHH
Q psy10418 230 KKLSKRLEHEGSSPMKSQQLSPEIDISALQKLRGQV------DSLRDQMRLKEKELGYRNSDVDNLKRQI 293 (389)
Q Consensus 230 k~L~~~ls~~~~~~~~~~e~~~~~d~~vm~kLKe~V------dkQRdeiRak~~el~~k~~evEaLq~Q~ 293 (389)
+.+++.+..+ ++..+++ .++++..+-. +++|..|-.-..++.....+|++|+.+.
T Consensus 163 ~~il~~~~~k------~~~~~~~---~l~~~~~~N~~m~kei~~~re~i~el~e~I~~L~~eV~~L~~~~ 223 (258)
T PF15397_consen 163 EEILSSAAEK------TQSPMQP---ALLQRTLENQVMQKEIVQFREEIDELEEEIPQLRAEVEQLQAQA 223 (258)
T ss_pred HHHHHHHHHH------HHhhchH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 183
>KOG1853|consensus
Probab=29.76 E-value=6.1e+02 Score=25.80 Aligned_cols=37 Identities=22% Similarity=0.296 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q psy10418 81 EREVEEIEESWKEETQQLVEMVNRLQEENKKLSKRLE 117 (389)
Q Consensus 81 ~~Ele~~Ed~~r~E~~eL~~~V~~LqeeN~~L~~~Ls 117 (389)
+++|+.-.+++...+++|...+.+|..|..++....-
T Consensus 47 EaelesqL~q~etrnrdl~t~nqrl~~E~e~~Kek~e 83 (333)
T KOG1853|consen 47 EAELESQLDQLETRNRDLETRNQRLTTEQERNKEKQE 83 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4466666666677777777777777666555544443
No 184
>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function.
Probab=29.52 E-value=3.7e+02 Score=23.13 Aligned_cols=35 Identities=31% Similarity=0.567 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHhh-hhhHHHHHHHHHHhhhhh
Q psy10418 203 NTLKTRLNELEEERQCF-KMVNRLQEENKKLSKRLE 237 (389)
Q Consensus 203 NELKa~vf~LqEEl~~~-~~V~qLqeeNk~L~~~ls 237 (389)
.+|+-++.+++||.+.+ +.++.+-.+|+.|-..|+
T Consensus 4 aeLR~qLqFvEEEa~LlRRkl~ele~eN~~l~~EL~ 39 (96)
T PF11365_consen 4 AELRRQLQFVEEEAELLRRKLSELEDENKQLTEELN 39 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47999999999999866 789999999999999888
No 185
>KOG0612|consensus
Probab=29.25 E-value=1.1e+03 Score=28.76 Aligned_cols=42 Identities=21% Similarity=0.298 Sum_probs=26.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy10418 299 TVRELRRKQRLSQVQVRGLIDERADFLAALQDHQREVAALKQQL 342 (389)
Q Consensus 299 ~n~eLRrk~~~~q~Q~r~l~eekadl~a~lq~~~~ei~~L~~~l 342 (389)
+-..+.++++..|.......-|..-+ .|+++..++..+-.+|
T Consensus 668 ~e~~~e~~lk~~q~~~eq~~~E~~~~--~L~~~e~~~~e~~~~l 709 (1317)
T KOG0612|consen 668 LEIKLERKLKMLQNELEQENAEHHRL--RLQDKEAQMKEIESKL 709 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--HHhhHHHHHHHHHHHh
Confidence 33456677777777776666665555 5666666666666555
No 186
>cd04787 HTH_HMRTR_unk Helix-Turn-Helix DNA binding domain of putative Heavy Metal Resistance transcription regulators. Putative helix-turn-helix (HTH) heavy metal resistance transcription regulators (HMRTR), unknown subgroup. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to heavy metal stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules, such as, metal ions, drugs, and organic substrates. This subgroup lacks one of the c
Probab=29.10 E-value=2.7e+02 Score=24.20 Aligned_cols=32 Identities=28% Similarity=0.412 Sum_probs=22.6
Q ss_pred ccHHHHHHHHHhh-----------HHHHHHHHHHHHHHHhhhh
Q psy10418 190 FTTAELKEILHDR-----------NTLKTRLNELEEERQCFKM 221 (389)
Q Consensus 190 FTl~ELreVL~ER-----------NELKa~vf~LqEEl~~~~~ 221 (389)
||+.|+++++... .-|..++..+++++..++.
T Consensus 58 ~sL~eI~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~l~~ 100 (133)
T cd04787 58 FSLKDIKEILSHADQGESPCPMVRRLIEQRLAETERRIKELLK 100 (133)
T ss_pred CCHHHHHHHHhhhccCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999988743 3456667777777766654
No 187
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=29.05 E-value=5.4e+02 Score=24.92 Aligned_cols=92 Identities=21% Similarity=0.329 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHHH-hhhhhHHHHHHHHHHhhhhhhcCCCCCccCCCCchhhHHHHHHHHHHHHHhHHHHHHhhhhhhhh
Q psy10418 204 TLKTRLNELEEERQ-CFKMVNRLQEENKKLSKRLEHEGSSPMKSQQLSPEIDISALQKLRGQVDSLRDQMRLKEKELGYR 282 (389)
Q Consensus 204 ELKa~vf~LqEEl~-~~~~V~qLqeeNk~L~~~ls~~~~~~~~~~e~~~~~d~~vm~kLKe~VdkQRdeiRak~~el~~k 282 (389)
-||.++-..+-|+. -..-|-.|+..++.....+.... .-+..|++.....--+|-.-..+|..+
T Consensus 14 LLKqQLke~q~E~~~K~~Eiv~Lr~ql~e~~~~l~~~~---------------~~~~~l~~~~~~K~~ELE~ce~ELqr~ 78 (202)
T PF06818_consen 14 LLKQQLKESQAEVNQKDSEIVSLRAQLRELRAELRNKE---------------SQIQELQDSLRTKQLELEVCENELQRK 78 (202)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhH---------------HHHHHHHHHHHHhhHhHHHhHHHHHHH
Confidence 47777777777775 23334444444444444443332 333444555544445556666667777
Q ss_pred hhhHHHHHHHHHHHHHhhHHHHHHHHHH
Q psy10418 283 NSDVDNLKRQIDRLTSTVRELRRKQRLS 310 (389)
Q Consensus 283 ~~evEaLq~Q~~RL~~~n~eLRrk~~~~ 310 (389)
.++++-|.+.+..|-.-+.+||.-...+
T Consensus 79 ~~Ea~lLrekl~~le~El~~Lr~~l~~~ 106 (202)
T PF06818_consen 79 KNEAELLREKLGQLEAELAELREELACA 106 (202)
T ss_pred hCHHHHhhhhhhhhHHHHHHHHHHHHhh
Confidence 7777777777777777777777666665
No 188
>PF14282 FlxA: FlxA-like protein
Probab=28.79 E-value=3e+02 Score=23.47 Aligned_cols=56 Identities=23% Similarity=0.360 Sum_probs=24.7
Q ss_pred hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy10418 285 DVDNLKRQIDRLTSTVRELRRKQRLSQVQVRGLIDERADFLAALQDHQREVAALKQQLG 343 (389)
Q Consensus 285 evEaLq~Q~~RL~~~n~eLRrk~~~~q~Q~r~l~eekadl~a~lq~~~~ei~~L~~~lg 343 (389)
.|+.|+.|+..|..-..+|..--.+-. ..--+.+..|+++++..+..|..+..+.+
T Consensus 20 ~I~~L~~Qi~~Lq~ql~~l~~~~~~~~---e~k~~q~q~Lq~QI~~LqaQI~qlq~q~~ 75 (106)
T PF14282_consen 20 QIEQLQKQIKQLQEQLQELSQDSDLDA---EQKQQQIQLLQAQIQQLQAQIAQLQSQQA 75 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHcccCCCH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666666655555555444111000 00112333444555555555555555444
No 189
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=28.68 E-value=2e+02 Score=21.96 Aligned_cols=34 Identities=18% Similarity=0.385 Sum_probs=23.7
Q ss_pred hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q psy10418 285 DVDNLKRQIDRLTSTVRELRRKQRLSQVQVRGLI 318 (389)
Q Consensus 285 evEaLq~Q~~RL~~~n~eLRrk~~~~q~Q~r~l~ 318 (389)
-++.|+..++.|...|..|+..+..+...+..|.
T Consensus 27 ~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~ 60 (64)
T PF00170_consen 27 YIEELEEKVEELESENEELKKELEQLKKEIQSLK 60 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3677777777777777777777766666665554
No 190
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=28.51 E-value=8.4e+02 Score=26.97 Aligned_cols=84 Identities=17% Similarity=0.290 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHHhHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10418 256 SALQKLRGQVDSLRDQMRLKEKELGYRNSDVDNLKRQIDRLTSTVRELRRKQRLSQVQVRGLIDERADFLAALQDHQREV 335 (389)
Q Consensus 256 ~vm~kLKe~VdkQRdeiRak~~el~~k~~evEaLq~Q~~RL~~~n~eLRrk~~~~q~Q~r~l~eekadl~a~lq~~~~ei 335 (389)
.-|..||..-.+-=+.|....-++..+-+++++|+.+.+-|.+.. +|+++.-.|..-...||-.|-..|-.---++
T Consensus 316 ~~~~~mk~K~~~~~g~l~kl~~eie~kEeei~~L~~~~d~L~~q~----~kq~Is~e~fe~mn~Ere~L~reL~~i~~~~ 391 (622)
T COG5185 316 NYVNAMKQKSQEWPGKLEKLKSEIELKEEEIKALQSNIDELHKQL----RKQGISTEQFELMNQEREKLTRELDKINIQS 391 (622)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH----HhcCCCHHHHHHHHHHHHHHHHHHHHhcchH
Confidence 345555555555556666666777788888899999988887765 6788888888888899998888888777778
Q ss_pred HHHHHHhh
Q psy10418 336 AALKQQLG 343 (389)
Q Consensus 336 ~~L~~~lg 343 (389)
..|++.+|
T Consensus 392 ~~L~k~V~ 399 (622)
T COG5185 392 DKLTKSVK 399 (622)
T ss_pred HHHHHHHH
Confidence 88887776
No 191
>PF06304 DUF1048: Protein of unknown function (DUF1048); InterPro: IPR008316 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.; PDB: 2O3L_B 2HH6_A 2O4T_A.
Probab=28.38 E-value=1.2e+02 Score=26.22 Aligned_cols=40 Identities=20% Similarity=0.211 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHhhCcchhhchhhHHHHHHHhHHHHhcccc
Q psy10418 20 EIGKEFEKIIDQYGPDAVTSIMPKVIVALEHLECLASKNE 59 (389)
Q Consensus 20 ~IG~EfErli~~~G~d~V~~LmpkVV~vLElLEs~~~~~~ 59 (389)
.+|.++.+-+=.||+-.-..+||-+--+|+++|..++.+.
T Consensus 26 ~ay~~i~~Yl~~~~~~~g~~~~~il~dildlfEe~aadG~ 65 (103)
T PF06304_consen 26 IAYKAIQKYLWYFGPTDGRDMMEILSDILDLFEEAAADGK 65 (103)
T ss_dssp HHHHHHHHHHHHHTBSSHHHHHHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHcCC
Confidence 4688999999999976788999999999999999998874
No 192
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=28.22 E-value=6.6e+02 Score=25.69 Aligned_cols=171 Identities=20% Similarity=0.366 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhhhhcccccCCCCCCcccccccccCCCCCCCCcccHHHHHHHHHhhHHHHHHHHHHHHHH-HhhhhhH
Q psy10418 145 VDSLRDQMRLKEKELGYRNSDVDNSDIPDLSNKAVYDLDDPNRPRFTTAELKEILHDRNTLKTRLNELEEER-QCFKMVN 223 (389)
Q Consensus 145 VdkQRDeiRake~eL~~k~~dve~l~~~~L~~~~~~d~~dpnrPrFTl~ELreVL~ERNELKa~vf~LqEEl-~~~~~V~ 223 (389)
+-..||++.++.+++. ...+++-.+|+++-.+|..+.++. ..+.-++
T Consensus 39 ~~ekRdeln~kvrE~~--------------------------------e~~~elr~~rdeineev~elK~kR~ein~kl~ 86 (294)
T COG1340 39 LAEKRDELNAKVRELR--------------------------------EKAQELREERDEINEEVQELKEKRDEINAKLQ 86 (294)
T ss_pred HHHHHHHHHHHHHHHH--------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHhhhhh---hcCCCCCc-------------cCCCCchhhHHHHHHHHHHHHHhHHHHHHhhhhhhhhhh--h
Q psy10418 224 RLQEENKKLSKRLE---HEGSSPMK-------------SQQLSPEIDISALQKLRGQVDSLRDQMRLKEKELGYRNS--D 285 (389)
Q Consensus 224 qLqeeNk~L~~~ls---~~~~~~~~-------------~~e~~~~~d~~vm~kLKe~VdkQRdeiRak~~el~~k~~--e 285 (389)
.|.-+-..+..... ..+.++.. |-.-.|+.++.+.+++++.-..-.+-=++...-...+.. +
T Consensus 87 eL~~~~~~l~e~~~~~~~~~~~~~~ler~i~~Le~~~~T~~L~~e~E~~lvq~I~~L~k~le~~~k~~e~~~~~~el~ae 166 (294)
T COG1340 87 ELRKEYRELKEKRNEFNLGGRSIKSLEREIERLEKKQQTSVLTPEEERELVQKIKELRKELEDAKKALEENEKLKELKAE 166 (294)
T ss_pred HHHHHHHHHHHHhhhhhccCCCHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-HHHH
Q psy10418 286 VDNLKRQIDRLTSTVRELRRKQRLSQVQVRGLIDERADFLAALQDHQREVAALKQQLG-LAEK 347 (389)
Q Consensus 286 vEaLq~Q~~RL~~~n~eLRrk~~~~q~Q~r~l~eekadl~a~lq~~~~ei~~L~~~lg-~~~k 347 (389)
+.++-....=+-.=..+|.....-.+.+|..++++.-++-.-.-..|.++..++.... +-++
T Consensus 167 i~~lk~~~~e~~eki~~la~eaqe~he~m~k~~~~~De~Rkeade~he~~ve~~~~~~e~~ee 229 (294)
T COG1340 167 IDELKKKAREIHEKIQELANEAQEYHEEMIKLFEEADELRKEADELHEEFVELSKKIDELHEE 229 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
No 193
>KOG4196|consensus
Probab=27.74 E-value=2.5e+02 Score=25.58 Aligned_cols=52 Identities=21% Similarity=0.295 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhhhhccccc-cCCCCCCC
Q psy10418 315 RGLIDERADFLAALQDHQREVAALKQQLGLAEKENEDLYNSQET-TSEEERPV 366 (389)
Q Consensus 315 r~l~eekadl~a~lq~~~~ei~~L~~~lg~~~k~~~dl~~~~~~-~~~~~~pv 366 (389)
..|=.+|+.|..++.....|+..+++++.--+--=+.+..+-|+ ++.++.|.
T Consensus 77 ~eLE~~k~~L~qqv~~L~~e~s~~~~E~da~k~k~e~l~~~~~~~~~~~~~pS 129 (135)
T KOG4196|consen 77 HELEKEKAELQQQVEKLKEENSRLRRELDAYKSKYEALQNSAVSVGASPVSPS 129 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCc
Confidence 34566788888888888888999999988433334455565565 33444443
No 194
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=27.72 E-value=3.3e+02 Score=25.52 Aligned_cols=13 Identities=31% Similarity=0.483 Sum_probs=8.5
Q ss_pred hhHHHHHHHhHHH
Q psy10418 41 MPKVIVALEHLEC 53 (389)
Q Consensus 41 mpkVV~vLElLEs 53 (389)
|..||+.|..|.+
T Consensus 82 l~~vI~fLq~l~~ 94 (161)
T TIGR02894 82 LQDVISFLQNLKT 94 (161)
T ss_pred HHHHHHHHHHHHh
Confidence 5667777766653
No 195
>COG3096 MukB Uncharacterized protein involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=27.44 E-value=1.1e+03 Score=27.89 Aligned_cols=100 Identities=19% Similarity=0.229 Sum_probs=75.0
Q ss_pred HHHHHHHHHHHHHhHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHhhHHH-------------------HHHHHHHHHHHH
Q psy10418 255 ISALQKLRGQVDSLRDQMRLKEKELGYRNSDVDNLKRQIDRLTSTVREL-------------------RRKQRLSQVQVR 315 (389)
Q Consensus 255 ~~vm~kLKe~VdkQRdeiRak~~el~~k~~evEaLq~Q~~RL~~~n~eL-------------------Rrk~~~~q~Q~r 315 (389)
+.-|..+..--+++|.++|.+..+++++|.=.-.|+..-+-=+.+..|| |+|-.-++.++-
T Consensus 990 r~rL~q~eaeR~~~reqlrQ~Q~Q~sqYnqvl~~LksS~~~K~~~l~El~qEl~d~GV~AD~gAeeRA~~RRDELh~~Ls 1069 (1480)
T COG3096 990 RQRLEQAEAERTRAREQLRQHQAQLSQYNQVLASLKSSYDTKKELLNELQQELQDIGVRADSGAEERARIRRDELHAQLS 1069 (1480)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCCcCcchHHHHHHHHHHHHHHHh
Confidence 3444455556678999999999999999987777776655444444443 455567889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhhhhc
Q psy10418 316 GLIDERADFLAALQDHQREVAALKQQLGLAEKENEDLYN 354 (389)
Q Consensus 316 ~l~eekadl~a~lq~~~~ei~~L~~~lg~~~k~~~dl~~ 354 (389)
+-..+|..++.+|---+-|+.+|.+++--.+++-.+++.
T Consensus 1070 t~RsRr~~~EkqlT~~E~E~~~L~~~~rK~ErDY~~~Re 1108 (1480)
T COG3096 1070 TNRSRRNQLEKQLTFCEAEMDNLTRKLRKLERDYFEMRE 1108 (1480)
T ss_pred ccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 999999999999999999999999888766666444444
No 196
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=27.42 E-value=5.3e+02 Score=26.36 Aligned_cols=42 Identities=17% Similarity=0.215 Sum_probs=24.5
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10418 293 IDRLTSTVRELRRKQRLSQVQVRGLIDERADFLAALQDHQRE 334 (389)
Q Consensus 293 ~~RL~~~n~eLRrk~~~~q~Q~r~l~eekadl~a~lq~~~~e 334 (389)
+..++.-..++.+.+..-+.++-....-.....+.|.+....
T Consensus 129 ~~~~t~~la~~t~~L~~~~~~l~q~~~k~~~~q~~l~~~~~~ 170 (301)
T PF06120_consen 129 QADATRKLAEATRELAVAQERLEQMQSKASETQATLNDLTEQ 170 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555666666666666666666666666666655554
No 197
>PF06216 RTBV_P46: Rice tungro bacilliform virus P46 protein; InterPro: IPR009347 This family consists of several Rice tungro bacilliform virus P46 proteins. The function of this family is unknown.
Probab=27.29 E-value=1.7e+02 Score=29.65 Aligned_cols=50 Identities=24% Similarity=0.203 Sum_probs=42.9
Q ss_pred HHHHHHhhhhhhhhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q psy10418 269 RDQMRLKEKELGYRNSDVDNLKRQIDRLTSTVRELRRKQRLSQVQVRGLI 318 (389)
Q Consensus 269 RdeiRak~~el~~k~~evEaLq~Q~~RL~~~n~eLRrk~~~~q~Q~r~l~ 318 (389)
.|-|=.++-|+...+.+-+.|..|+.-|.+.|.++|.+.+-+.--+-+|.
T Consensus 63 ~~~~y~~e~e~~sy~~e~~~l~~qvs~l~~~~~~~r~~~~~~~~~~eglr 112 (389)
T PF06216_consen 63 SDYIYNKEFERQSYSNEWISLNDQVSHLQHQNSEQRQQIREMREIIEGLR 112 (389)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 35678889999999999999999999999999999999988776655553
No 198
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=26.90 E-value=5.8e+02 Score=24.63 Aligned_cols=93 Identities=22% Similarity=0.249 Sum_probs=55.2
Q ss_pred HHHHHHHHHhHHHHHHhhhhhhhhhh-----hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10418 259 QKLRGQVDSLRDQMRLKEKELGYRNS-----DVDNLKRQIDRLTSTVRELRRKQRLSQVQVRGLIDERADFLAALQDHQR 333 (389)
Q Consensus 259 ~kLKe~VdkQRdeiRak~~el~~k~~-----evEaLq~Q~~RL~~~n~eLRrk~~~~q~Q~r~l~eekadl~a~lq~~~~ 333 (389)
.-|...|..-.+.|.....++...+. .-+.++.-+.-..+|..++|.|. +..|-..+-.|....+.-|..-+.
T Consensus 90 ~~L~~~i~~l~~~i~~l~~~~~~l~~~~~~~~~~~l~~~l~ea~~mL~emr~r~--f~~~~~~Ae~El~~A~~LL~~v~~ 167 (264)
T PF06008_consen 90 QDLEQFIQNLQDNIQELIEQVESLNENGDQLPSEDLQRALAEAQRMLEEMRKRD--FTPQRQNAEDELKEAEDLLSRVQK 167 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHHHHHHHHHHHhcc--chhHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556666667776666666655 34556666666777788888885 677777777777666655554444
Q ss_pred HHHHHHHHhh-HHHHhhhhhh
Q psy10418 334 EVAALKQQLG-LAEKENEDLY 353 (389)
Q Consensus 334 ei~~L~~~lg-~~~k~~~dl~ 353 (389)
.+........ +++....+|.
T Consensus 168 ~~~~~~~~~~~l~~~i~~~L~ 188 (264)
T PF06008_consen 168 WFQKPQQENESLAEAIRDDLN 188 (264)
T ss_pred HHhhHHHhhHHHHHHHHHHHH
Confidence 4433333332 3343333333
No 199
>PF15005 IZUMO: Izumo sperm-egg fusion
Probab=26.90 E-value=1.2e+02 Score=28.31 Aligned_cols=51 Identities=6% Similarity=0.074 Sum_probs=37.4
Q ss_pred ccccCCchHHHHHHHHHHHHHHHHHHHHhhCcchhhchhhHHHHHHHhHHHHh
Q psy10418 3 DEYSSTLTVIDVFDIASEIGKEFEKIIDQYGPDAVTSIMPKVIVALEHLECLA 55 (389)
Q Consensus 3 ~~~~~~ltveDVydiA~~IG~EfErli~~~G~d~V~~LmpkVV~vLElLEs~~ 55 (389)
|.+.+.|.+..|...|.++.+++.+|.+..=. =..|++..|.+++++....
T Consensus 56 ~a~~g~vd~~~L~~va~~~~~~lkrl~~s~~k--g~~ll~EL~~~r~~~~~~l 106 (160)
T PF15005_consen 56 DAFMGVVDEDTLDKVAWSFKNQLKRLTDSDLK--GEPLLKELVWMRQNQKKEL 106 (160)
T ss_pred hhhhhhccHHHHHHHHHHHHHHHHHHhcCCcc--cchHHHHHHHHHHHHHHHH
Confidence 45567888999999999999999999764111 1257777787777665544
No 200
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=26.02 E-value=1.1e+03 Score=28.31 Aligned_cols=130 Identities=18% Similarity=0.141 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhhcCCCCCccCCCCchhhHHHHHHHHHHHHHhHHHHHHh---------h
Q psy10418 206 KTRLNELEEERQCFKMVNRLQEENKKLSKRLEHEGSSPMKSQQLSPEIDISALQKLRGQVDSLRDQMRLK---------E 276 (389)
Q Consensus 206 Ka~vf~LqEEl~~~~~V~qLqeeNk~L~~~ls~~~~~~~~~~e~~~~~d~~vm~kLKe~VdkQRdeiRak---------~ 276 (389)
|+-+..++.=|..+..+...+..++.+.+.+...+ ..+..++.-++...+..... +
T Consensus 44 k~~~~~l~~tl~~l~~~~~~~~~~~~~~~~i~~ap---------------~~~~~~~~~l~~~~~~~~~~~~~~s~~~Le 108 (1109)
T PRK10929 44 AEIVEALQSALNWLEERKGSLERAKQYQQVIDNFP---------------KLSAELRQQLNNERDEPRSVPPNMSTDALE 108 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH---------------HHHHHHHHHHHhhhcccccccccCCHHHHH
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHhh--------------HHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHH
Q psy10418 277 KELGYRNSDVDNLKRQIDRLTSTV--------------RELRRKQRLSQVQVRGL--------IDERADFLAALQDHQRE 334 (389)
Q Consensus 277 ~el~~k~~evEaLq~Q~~RL~~~n--------------~eLRrk~~~~q~Q~r~l--------~eekadl~a~lq~~~~e 334 (389)
..+...+.+...+|+++.....-- .+.|++..-..+++.+. -.++.-++|...-...+
T Consensus 109 q~l~~~~~~L~~~q~~l~~~~~~~~~~~~~l~~~pq~~~~~~~~l~~i~~~L~~~~~~~~~l~~a~~~~lqae~~~l~~~ 188 (1109)
T PRK10929 109 QEILQVSSQLLEKSRQAQQEQDRAREISDSLSQLPQQQTEARRQLNEIERRLQTLGTPNTPLAQAQLTALQAESAALKAL 188 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhchhhHHHHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHhhHHHHhhh
Q psy10418 335 VAALKQQLGLAEKENE 350 (389)
Q Consensus 335 i~~L~~~lg~~~k~~~ 350 (389)
+..+++.+.-+.+.++
T Consensus 189 ~~~l~~~l~s~~~~~~ 204 (1109)
T PRK10929 189 VDELELAQLSANNRQE 204 (1109)
T ss_pred HHHHHHHHhccHHHHH
No 201
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=25.81 E-value=4.6e+02 Score=23.06 Aligned_cols=90 Identities=22% Similarity=0.298 Sum_probs=48.3
Q ss_pred hhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhhcCCCCCccCCCCchhhHHHHHHHHHHHHHhHHHHHHhhhhhh
Q psy10418 201 DRNTLKTRLNELEEERQCFKMVNRLQEENKKLSKRLEHEGSSPMKSQQLSPEIDISALQKLRGQVDSLRDQMRLKEKELG 280 (389)
Q Consensus 201 ERNELKa~vf~LqEEl~~~~~V~qLqeeNk~L~~~ls~~~~~~~~~~e~~~~~d~~vm~kLKe~VdkQRdeiRak~~el~ 280 (389)
-||++-.++--|+.+|..++. + .+-..+|||.|++--..|.
T Consensus 10 s~~el~n~La~Le~slE~~K~-----------------------------S----------~~eL~kqkd~L~~~l~~L~ 50 (107)
T PF09304_consen 10 SQNELQNRLASLERSLEDEKT-----------------------------S----------QGELAKQKDQLRNALQSLQ 50 (107)
T ss_dssp ----HHHHHHHHHHHHHHHHH-----------------------------H----------HHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHh-----------------------------h----------HHHHHHhHHHHHHHHHHHH
Confidence 466777777777777777764 0 1223788998888766654
Q ss_pred hhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10418 281 YRNSDVDNLKRQIDRLTSTVRELRRKQRLSQVQVRGLIDERADFLAALQDHQREVAALK 339 (389)
Q Consensus 281 ~k~~evEaLq~Q~~RL~~~n~eLRrk~~~~q~Q~r~l~eekadl~a~lq~~~~ei~~L~ 339 (389)
.-+. =+.+-..||.+++.=+-.++-.--.-|-++++.+-..++....+-
T Consensus 51 ~q~~----------s~~qr~~eLqaki~ea~~~le~eK~ak~~l~~r~~k~~~dka~le 99 (107)
T PF09304_consen 51 AQNA----------SRNQRIAELQAKIDEARRNLEDEKQAKLELESRLLKAQKDKAILE 99 (107)
T ss_dssp HHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 4332 222223344444444444444433334466666666666665554
No 202
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=25.74 E-value=8.9e+02 Score=26.35 Aligned_cols=26 Identities=15% Similarity=0.112 Sum_probs=17.7
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHH
Q psy10418 129 LSPEIDISVLQKLRGQVDSLRDQMRL 154 (389)
Q Consensus 129 ~~~e~er~vm~kLKe~VdkQRDeiRa 154 (389)
|-...-+.++.+|++.++...+-+..
T Consensus 191 Gd~~~A~e~l~~l~~~~~~l~~~~~~ 216 (569)
T PRK04778 191 GDYVEAREILDQLEEELAALEQIMEE 216 (569)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44456778888888877776666553
No 203
>KOG2751|consensus
Probab=25.71 E-value=7.5e+02 Score=26.74 Aligned_cols=20 Identities=25% Similarity=0.448 Sum_probs=17.3
Q ss_pred hHHHHHHHHHHHHHHHhhhh
Q psy10418 202 RNTLKTRLNELEEERQCFKM 221 (389)
Q Consensus 202 RNELKa~vf~LqEEl~~~~~ 221 (389)
+|.|++.+-++..|.+.|+.
T Consensus 145 ~~~ld~e~~~~~~e~~~Y~~ 164 (447)
T KOG2751|consen 145 LNKLDKEVEDAEDEVDTYKA 164 (447)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 68889999999999988875
No 204
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=25.64 E-value=5.1e+02 Score=23.51 Aligned_cols=81 Identities=19% Similarity=0.258 Sum_probs=48.6
Q ss_pred HHhhhhhhhhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhhh
Q psy10418 273 RLKEKELGYRNSDVDNLKRQIDRLTSTVRELRRKQRLSQVQVRGLIDERADFLAALQDHQREVAALKQQLGLAEKENEDL 352 (389)
Q Consensus 273 Rak~~el~~k~~evEaLq~Q~~RL~~~n~eLRrk~~~~q~Q~r~l~eekadl~a~lq~~~~ei~~L~~~lg~~~k~~~dl 352 (389)
......|..+|.++-.|..-.-.-+-+..-.|-|...+...+..+..+=++....+.....++..+..+..-+.+.+..+
T Consensus 52 ~~l~~kIeERn~eL~~Lk~~~~~~v~~L~h~keKl~~~~~~~~~l~~~l~~~~~~~~~~r~~l~~~k~~r~k~~~~~~~l 131 (177)
T PF13870_consen 52 QQLNEKIEERNKELLKLKKKIGKTVQILTHVKEKLHFLSEELERLKQELKDREEELAKLREELYRVKKERDKLRKQNKKL 131 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555666677777766666666666677777766666666666655555555555555555555555444444444
Q ss_pred h
Q psy10418 353 Y 353 (389)
Q Consensus 353 ~ 353 (389)
.
T Consensus 132 ~ 132 (177)
T PF13870_consen 132 R 132 (177)
T ss_pred H
Confidence 4
No 205
>PF13801 Metal_resist: Heavy-metal resistance; PDB: 3EPV_C 2Y3D_A 2Y3H_D 2Y3G_B 2Y3B_A 2Y39_A 3LAY_H.
Probab=25.16 E-value=3.6e+02 Score=21.56 Aligned_cols=67 Identities=13% Similarity=0.245 Sum_probs=32.2
Q ss_pred HHHHHhHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10418 263 GQVDSLRDQMRLKEKELGYRNSDVDNLKRQIDRLTSTVRELRRKQRLSQVQVRGLIDERADFLAALQDHQ 332 (389)
Q Consensus 263 e~VdkQRdeiRak~~el~~k~~evEaLq~Q~~RL~~~n~eLRrk~~~~q~Q~r~l~eekadl~a~lq~~~ 332 (389)
..-+.|+.+|++...+... ++..+..++..+..-...+-.+-..=...+++++++-.+..+.+...-
T Consensus 41 ~Lt~eQ~~~l~~~~~~~~~---~~~~~r~~~~~~r~~l~~ll~~~~~D~~~i~a~~~~~~~~~~~l~~~~ 107 (125)
T PF13801_consen 41 NLTPEQQAKLRALMDEFRQ---EMRALRQELRAARQELRALLAAPPPDEAAIEALLEEIREAQAELRQER 107 (125)
T ss_dssp -TTHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHCCSSS-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345666666666555443 333334443333333333333334445566666666666666555443
No 206
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=25.05 E-value=8.1e+02 Score=25.62 Aligned_cols=36 Identities=8% Similarity=0.209 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhHHH
Q psy10418 311 QVQVRGLIDERA-DFLAALQDHQREVAALKQQLGLAE 346 (389)
Q Consensus 311 q~Q~r~l~eeka-dl~a~lq~~~~ei~~L~~~lg~~~ 346 (389)
+.+...+..... +...++.+.+.++..++.++..++
T Consensus 275 ~~~~~~l~~~~~~~~~~~l~~~~~~l~~~~~~l~~a~ 311 (457)
T TIGR01000 275 NSKLAQLKEQQLAKVKQEITDLNQKLLELESKIKSLK 311 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555554333 566666666666666666665333
No 207
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=24.55 E-value=7.4e+02 Score=25.04 Aligned_cols=80 Identities=21% Similarity=0.271 Sum_probs=34.6
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q psy10418 275 KEKELGYRNSDVDNLKRQIDRLTSTVRELRRKQRLSQVQVRGLID-------ERADFLAALQDHQREVAALKQQLGLAEK 347 (389)
Q Consensus 275 k~~el~~k~~evEaLq~Q~~RL~~~n~eLRrk~~~~q~Q~r~l~e-------ekadl~a~lq~~~~ei~~L~~~lg~~~k 347 (389)
...++.....+.+.+...+..|.+-..+|..-...++.+...+-+ ....+.-++...+.+...+..++-.+..
T Consensus 48 ~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~~~~~ 127 (314)
T PF04111_consen 48 LEEELEKLEQEEEELLQELEELEKEREELDQELEELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLKNQYEYASN 127 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333343333444444444444444444444444444444444433 3344444444444444455444443333
Q ss_pred hhhhhhc
Q psy10418 348 ENEDLYN 354 (389)
Q Consensus 348 ~~~dl~~ 354 (389)
.-..|++
T Consensus 128 ~L~~L~k 134 (314)
T PF04111_consen 128 QLDRLRK 134 (314)
T ss_dssp HHHCHHT
T ss_pred HHHHHHh
Confidence 3333333
No 208
>PF12130 DUF3585: Protein of unknown function (DUF3585); InterPro: IPR022735 This domain is found in eukaryotes. It is typically between 135 and 149 amino acids in length and is found associated with PF00307 from PFAM.
Probab=24.40 E-value=4.9e+02 Score=23.40 Aligned_cols=77 Identities=23% Similarity=0.291 Sum_probs=43.4
Q ss_pred HHHHHHHHHhhHHHHHH---HHHHHHHHHhhhhhHHHHHHHHHHhhhhhhcCCCCCccCCCCchhhHHHHHHHHHHHHHh
Q psy10418 192 TAELKEILHDRNTLKTR---LNELEEERQCFKMVNRLQEENKKLSKRLEHEGSSPMKSQQLSPEIDISALQKLRGQVDSL 268 (389)
Q Consensus 192 l~ELreVL~ERNELKa~---vf~LqEEl~~~~~V~qLqeeNk~L~~~ls~~~~~~~~~~e~~~~~d~~vm~kLKe~VdkQ 268 (389)
+.+.=.++++||.|.-+ +..+..++..-.....|+-+.+.+...-.. .++..+ ...+..+|.+|=++|+ +
T Consensus 46 l~ewf~Lv~eKn~LvrreseL~~~~~~~~Le~~~~~L~~ELr~l~~~~d~-----~KT~~d-~~rE~~Ll~elv~lV~-~ 118 (142)
T PF12130_consen 46 LQEWFKLVNEKNALVRRESELMYMEKEQELEDRQARLEQELRELLAKPDW-----EKTEED-KQREEELLQELVELVN-K 118 (142)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhcccc-----ccChhh-HHHHHHHHHHHHHHHH-h
Confidence 45777788999988643 333333444434444444444444332211 112222 2347799999999998 4
Q ss_pred HHHHHHh
Q psy10418 269 RDQMRLK 275 (389)
Q Consensus 269 RdeiRak 275 (389)
||.|-..
T Consensus 119 Rd~LV~~ 125 (142)
T PF12130_consen 119 RDALVQD 125 (142)
T ss_pred hHHHHHc
Confidence 8887554
No 209
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=24.39 E-value=3e+02 Score=21.66 Aligned_cols=42 Identities=31% Similarity=0.399 Sum_probs=21.6
Q ss_pred HHHHHhhhhhhhhhhhHHHHHHHHHHHHHhhHHHHHHHHHHH
Q psy10418 270 DQMRLKEKELGYRNSDVDNLKRQIDRLTSTVRELRRKQRLSQ 311 (389)
Q Consensus 270 deiRak~~el~~k~~evEaLq~Q~~RL~~~n~eLRrk~~~~q 311 (389)
-.|-..+.-+...|.-|-+.|.+|++|.+..+-|+.|++.+.
T Consensus 11 ~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 52 (69)
T PF04102_consen 11 IKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRELE 52 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344445555555555566666666666666666666655554
No 210
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=24.37 E-value=25 Score=40.17 Aligned_cols=119 Identities=19% Similarity=0.314 Sum_probs=0.0
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHhh-hhhHHHHHHHHHHhhhhhhcCC---CCCccCCCCchhhHHHHHHHHHHHHHhH
Q psy10418 194 ELKEILHDRNTLKTRLNELEEERQCF-KMVNRLQEENKKLSKRLEHEGS---SPMKSQQLSPEIDISALQKLRGQVDSLR 269 (389)
Q Consensus 194 ELreVL~ERNELKa~vf~LqEEl~~~-~~V~qLqeeNk~L~~~ls~~~~---~~~~~~e~~~~~d~~vm~kLKe~VdkQR 269 (389)
..|.+=.++.+|+..+-.++..|... ..+.+|+-+...+...+...-. ..+........ .-|..|...++
T Consensus 462 ~kr~LE~e~~El~~~leE~E~~l~~~E~~~lRl~~el~~~r~e~er~l~eKeeE~E~~Rr~~q---r~l~~le~~LE--- 535 (859)
T PF01576_consen 462 AKRRLEQEKEELQEQLEEAEDALEAEEQKKLRLQVELQQLRQEIERELQEKEEEFEETRRNHQ---RQLESLEAELE--- 535 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhH---HHHHHHHhHHH---
Confidence 44555567777888877777777644 3344454444444333321110 00000000001 11222222222
Q ss_pred HHHHHhhhhhhh---hhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q psy10418 270 DQMRLKEKELGY---RNSDVDNLKRQIDRLTSTVRELRRKQRLSQVQVRGLI 318 (389)
Q Consensus 270 deiRak~~el~~---k~~evEaLq~Q~~RL~~~n~eLRrk~~~~q~Q~r~l~ 318 (389)
.+.|.+..-+.. .-.||.-|..|++-..+.+.++.+-++-+++|++-+.
T Consensus 536 ~E~k~r~~~~r~kkKLE~~l~eLe~~ld~~n~~~~e~~k~~kk~q~qlkdlq 587 (859)
T PF01576_consen 536 EERKERAEALREKKKLESDLNELEIQLDHANRANEEAQKQLKKLQAQLKDLQ 587 (859)
T ss_dssp ----------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHh
Confidence 111221111111 1235666777777777777777777777777777554
No 211
>KOG0946|consensus
Probab=24.30 E-value=1.2e+03 Score=27.42 Aligned_cols=234 Identities=20% Similarity=0.245 Sum_probs=111.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCccCCCCchHHHHHHHHHHHHHHHHHHHHHHHH------
Q psy10418 83 EVEEIEESWKEETQQLVEMVNRLQEENKKLSKRLEHEGSSPMKSQQLSPEIDISVLQKLRGQVDSLRDQMRLKE------ 156 (389)
Q Consensus 83 Ele~~Ed~~r~E~~eL~~~V~~LqeeN~~L~~~Ls~~~~~~~~~~~~~~e~er~vm~kLKe~VdkQRDeiRake------ 156 (389)
++..-...+..+.+++.+..++|..++.-|..+|.--.+. + ...-..+++..-.-+....+|-+...-.
T Consensus 682 ~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~qLg~~~~~----~-~~~~q~~e~~~t~~eel~a~~~e~k~l~~~q~~l 756 (970)
T KOG0946|consen 682 ELQVENEELEEEVQDFISEHSQLKDQLDLLKNQLGIISSK----Q-RDLLQGAEASKTQNEELNAALSENKKLENDQELL 756 (970)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc----h-hhHHhHHHhccCChHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455555566666666666666666666511110 1 1111233444444445555555544422
Q ss_pred -hhhhcccccCCCCCCc----ccccccccCCCCCCCCcccH---HHHHHHHHhhHHHHHHHHHHHHHHHhhhhhHHHHHH
Q psy10418 157 -KELGYRNSDVDNSDIP----DLSNKAVYDLDDPNRPRFTT---AELKEILHDRNTLKTRLNELEEERQCFKMVNRLQEE 228 (389)
Q Consensus 157 -~eL~~k~~dve~l~~~----~L~~~~~~d~~dpnrPrFTl---~ELreVL~ERNELKa~vf~LqEEl~~~~~V~qLqee 228 (389)
.+|..++.++++.+.. .++++... |.+ ..+-+.+.+=.|+++++..++-++..|+. +
T Consensus 757 ~~~L~k~~~~~es~k~~~~~a~~~~~~~~---------~~~~~qeqv~El~~~l~e~~~~l~~~q~e~~~~ke------q 821 (970)
T KOG0946|consen 757 TKELNKKNADIESFKATQRSAELSQGSLN---------DNLGDQEQVIELLKNLSEESTRLQELQSELTQLKE------Q 821 (970)
T ss_pred HHHHHhhhHHHHHHHHHHhhhhcccchhh---------hhhhhHHHHHHHHHhhhhhhhHHHHHHHHHHHHHH------H
Confidence 2345555555433221 11111111 111 23444455566778888888888876653 4
Q ss_pred HHHHhhhhhhcCCCC--CccCCCCchhhHHHHHH----HHHHHHHhHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHhhHH
Q psy10418 229 NKKLSKRLEHEGSSP--MKSQQLSPEIDISALQK----LRGQVDSLRDQMRLKEKELGYRNSDVDNLKRQIDRLTSTVRE 302 (389)
Q Consensus 229 Nk~L~~~ls~~~~~~--~~~~e~~~~~d~~vm~k----LKe~VdkQRdeiRak~~el~~k~~evEaLq~Q~~RL~~~n~e 302 (389)
-..+....+....+- +...+-.+..+...+.+ |++ +|+.....+..-...+-+|..|.+-=..+-+=
T Consensus 822 ~~t~~~~tsa~a~~le~m~~~~~~la~e~~~ieq~ls~l~~-------~~k~~~nli~~ltEk~~sl~~qadse~l~ka~ 894 (970)
T KOG0946|consen 822 IQTLLERTSAAADSLESMGSTEKNLANELKLIEQKLSNLQE-------KIKFGNNLIKELTEKISSLEAQADSETLSKAL 894 (970)
T ss_pred HHHHHHHHHhhhhhhHHhhccccchhhHHHHHHHHHHHHHH-------HhhhhhhHHHHHhhhhhhHHHhhcchHHHHHH
Confidence 444444444433110 00111111112222222 332 23333333333333333343444332222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy10418 303 LRRKQRLSQVQVRGLIDERADFLAALQDHQREVAALKQQLG 343 (389)
Q Consensus 303 LRrk~~~~q~Q~r~l~eekadl~a~lq~~~~ei~~L~~~lg 343 (389)
.--|..-.+.-+-+.-+|+-+|..-+-++++-|.+|+.-+.
T Consensus 895 ~~~k~~nl~lki~s~kqeqee~~v~~~~~~~~i~alk~~l~ 935 (970)
T KOG0946|consen 895 KTVKSENLSLKIVSNKQEQEELLVLLADQKEKIQALKEALE 935 (970)
T ss_pred HHhhcccchhcccchhhhHHHHHHHHhhHHHHHHHHHHHHH
Confidence 22233445556667778999999999999999999997664
No 212
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=24.26 E-value=5.6e+02 Score=27.92 Aligned_cols=70 Identities=20% Similarity=0.222 Sum_probs=39.2
Q ss_pred HhhhhhhhhhhhHHHHHHHHHHHHHhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy10418 274 LKEKELGYRNSDVDNLKRQIDRLTSTVRELRRKQ-RLSQVQVRGLIDERADFLAALQDHQREVAALKQQLG 343 (389)
Q Consensus 274 ak~~el~~k~~evEaLq~Q~~RL~~~n~eLRrk~-~~~q~Q~r~l~eekadl~a~lq~~~~ei~~L~~~lg 343 (389)
+-..++...-.+-++|..+.+||.+.+..+-.++ .++++=-..+.+++..+..+.+..+..+..|..+|+
T Consensus 70 ~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~av~~~~~~~~~~~~ql~~~~~~~~~~l~~l~~~l~ 140 (472)
T TIGR03752 70 ELRKRLAKLISENEALKAENERLQKREQSIDQQIQQAVQSETQELTKEIEQLKSERQQLQGLIDQLQRRLA 140 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3334445555566778888888877444444332 223332234445555556666666666666666763
No 213
>PF09429 Wbp11: WW domain binding protein 11; InterPro: IPR019007 Synonym(s): Rsp5 or WWP domain The WW domain is a short conserved region in a number of unrelated proteins, which folds as a stable, triple stranded beta-sheet. This short domain of approximately 40 amino acids, may be repeated up to four times in some proteins [, , , ]. The name WW or WWP derives from the presence of two signature tryptophan residues that are spaced 20-23 amino acids apart and are present in most WW domains known to date, as well as that of a conserved Pro. The WW domain binds to proteins with particular proline-motifs, [AP]-P-P-[AP]-Y, and/or phosphoserine- phosphothreonine-containing motifs [, ]. It is frequently associated with other domains typical for proteins in signal transduction processes. A large variety of proteins containing the WW domain are known. These include; dystrophin, a multidomain cytoskeletal protein; utrophin, a dystrophin-like protein of unknown function; vertebrate YAP protein, substrate of an unknown serine kinase; Mus musculus (Mouse) NEDD-4, involved in the embryonic development and differentiation of the central nervous system; Saccharomyces cerevisiae (Baker's yeast) RSP5, similar to NEDD-4 in its molecular organisation; Rattus norvegicus (Rat) FE65, a transcription-factor activator expressed preferentially in liver; Nicotiana tabacum (Common tobacco) DB10 protein, amongst others. This entry represents WW domain-binding protein 11, which may play a role in the regulation of pre-mRNA processing. ; GO: 0006396 RNA processing
Probab=24.12 E-value=2.2e+02 Score=23.20 Aligned_cols=25 Identities=32% Similarity=0.481 Sum_probs=20.9
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHHHh
Q psy10418 275 KEKELGYRNSDVDNLKRQIDRLTST 299 (389)
Q Consensus 275 k~~el~~k~~evEaLq~Q~~RL~~~ 299 (389)
..++-.....|...|+.|+++|..+
T Consensus 28 ~~R~~~l~~kdp~~l~~ei~~L~~~ 52 (78)
T PF09429_consen 28 KVREAKLAKKDPDRLQEEIDKLEEM 52 (78)
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3456677788999999999999998
No 214
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=24.04 E-value=2.8e+02 Score=24.01 Aligned_cols=48 Identities=23% Similarity=0.362 Sum_probs=0.0
Q ss_pred HHHHHhhhhhhhhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q psy10418 270 DQMRLKEKELGYRNSDVDNLKRQIDRLTSTVRELRRKQRLSQVQVRGL 317 (389)
Q Consensus 270 deiRak~~el~~k~~evEaLq~Q~~RL~~~n~eLRrk~~~~q~Q~r~l 317 (389)
|.|..-+..|.....++++|..++.-|+.=|..||.-...+...+..+
T Consensus 8 ~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~ 55 (107)
T PF06156_consen 8 DRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEEL 55 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 215
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=24.03 E-value=8.7e+02 Score=25.90 Aligned_cols=36 Identities=17% Similarity=0.069 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10418 304 RRKQRLSQVQVRGLIDERADFLAALQDHQREVAALK 339 (389)
Q Consensus 304 Rrk~~~~q~Q~r~l~eekadl~a~lq~~~~ei~~L~ 339 (389)
+.+...+..+.+.+-.+..++...+...++++..+.
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l~ 172 (525)
T TIGR02231 137 GSEIERLLTEDREAERRIRELEKQLSELQNELNALL 172 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 333333344444444444444444444444444443
No 216
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=24.01 E-value=2.4e+02 Score=28.87 Aligned_cols=46 Identities=20% Similarity=0.475 Sum_probs=36.6
Q ss_pred chhHHHhhhhhhHHHHhHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHH
Q psy10418 62 NTKLQELGDHISKLEHEKLEREVEEIEES-----WKEETQQLVEMVNRLQE 107 (389)
Q Consensus 62 ~~~~e~L~~~~~qle~Ek~~~Ele~~Ed~-----~r~E~~eL~~~V~~Lqe 107 (389)
..++++|+.++.+++.+=.++|-..+|.+ .|+|++.|.+-|++...
T Consensus 88 etEI~eLksQL~RMrEDWIEEECHRVEAQLALKEARkEIkQLkQvieTmrs 138 (305)
T PF15290_consen 88 ETEIDELKSQLARMREDWIEEECHRVEAQLALKEARKEIKQLKQVIETMRS 138 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 47899999988888887777777777776 68888888888876653
No 217
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=23.91 E-value=4.7e+02 Score=22.48 Aligned_cols=34 Identities=18% Similarity=0.295 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10418 308 RLSQVQVRGLIDERADFLAALQDHQREVAALKQQ 341 (389)
Q Consensus 308 ~~~q~Q~r~l~eekadl~a~lq~~~~ei~~L~~~ 341 (389)
..++..++++..+...+...++.+..++..|+.+
T Consensus 83 ~~l~~~~~~~~~~~~~l~~~~~~~~~~~k~lk~E 116 (118)
T PF13815_consen 83 EQLEERLQELQQEIEKLKQKLKKQKEEIKKLKKE 116 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344444445555555555555555555555544
No 218
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=23.33 E-value=1.1e+03 Score=26.40 Aligned_cols=28 Identities=29% Similarity=0.494 Sum_probs=21.3
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHhh
Q psy10418 192 TAELKEILHDRNTLKTRLNELEEERQCF 219 (389)
Q Consensus 192 l~ELreVL~ERNELKa~vf~LqEEl~~~ 219 (389)
.+||.++=.+-++|.+++..+..++.-+
T Consensus 327 ~~el~~l~~~l~~l~~~i~~~~~~~~~l 354 (594)
T PF05667_consen 327 EQELEELQEQLDELESQIEELEAEIKML 354 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577777777777888888888888755
No 219
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=23.30 E-value=5.6e+02 Score=23.18 Aligned_cols=21 Identities=29% Similarity=0.450 Sum_probs=11.1
Q ss_pred hhhhhHHHHHHHHHHhhhhhh
Q psy10418 218 CFKMVNRLQEENKKLSKRLEH 238 (389)
Q Consensus 218 ~~~~V~qLqeeNk~L~~~ls~ 238 (389)
..+++.+++.+...+...+..
T Consensus 86 ~~~~l~~l~~el~~l~~~~~~ 106 (191)
T PF04156_consen 86 LQQQLQQLQEELDQLQERIQE 106 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 445555666555555544443
No 220
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.21 E-value=1.3e+02 Score=30.09 Aligned_cols=58 Identities=24% Similarity=0.308 Sum_probs=46.0
Q ss_pred hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy10418 285 DVDNLKRQIDRLTSTVRELRRKQRLSQVQVRGLIDERADFLAALQDHQREVAALKQQLG 343 (389)
Q Consensus 285 evEaLq~Q~~RL~~~n~eLRrk~~~~q~Q~r~l~eekadl~a~lq~~~~ei~~L~~~lg 343 (389)
-+-.|++|+..|..-..+|+| ...+|.|....+++-.+.++.++.....-.++-+..|
T Consensus 57 ~~~~l~~Ql~~l~g~i~~L~~-~~~~q~q~~~~~~~qe~~~~~~~~~~~g~~a~~~~~~ 114 (262)
T COG1729 57 RLTQLEQQLRQLQGKIEELRG-IQELQYQNNQNVERQEENEARLDSLESGRQALAQGIG 114 (262)
T ss_pred ccHHHHHHHHHHHhhHHHHHh-HHHHHHHHHHHHHHHHHHHhhhhhhcccccccccccc
Confidence 456788899999999999999 8889999988888888888888877665555555554
No 221
>PF11598 COMP: Cartilage oligomeric matrix protein; InterPro: IPR024665 Thrombospondins are adhesive glycoproteins that mediate cell-to-cell and cell-to-matrix interactions. Cartilage oligomeric matrix protein may play a role in the structural integrity of cartilage via its interaction with other extracellular matrix proteins such as collagen and fibronectin [, ]. Thrombospondin 3 and 4 and cartilage oligomeric matrix proteins contain a five-stranded coiled-coil domain represented by this entry. This domain has a binding site between two internal rings formed by Leu37 and Thr40 [].; PDB: 1MZ9_D 1FBM_A 1VDF_E.
Probab=22.33 E-value=1.6e+02 Score=22.01 Aligned_cols=24 Identities=17% Similarity=0.195 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHhHHHHHHhhhh
Q psy10418 255 ISALQKLRGQVDSLRDQMRLKEKE 278 (389)
Q Consensus 255 ~~vm~kLKe~VdkQRdeiRak~~e 278 (389)
..+|..||+.++.|+.|++....-
T Consensus 14 ~~~l~elk~~l~~Q~kE~~~LRnt 37 (45)
T PF11598_consen 14 NQMLQELKELLRQQIKETRFLRNT 37 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 378999999999999999876543
No 222
>KOG0577|consensus
Probab=22.22 E-value=1.2e+03 Score=26.81 Aligned_cols=62 Identities=19% Similarity=0.216 Sum_probs=37.8
Q ss_pred HhHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Q psy10418 267 SLRDQMRLKEKELGYRNSDVDNLKRQIDRLTSTVRELRRKQRL-SQVQVRGLIDERADFLAALQ 329 (389)
Q Consensus 267 kQRdeiRak~~el~~k~~evEaLq~Q~~RL~~~n~eLRrk~~~-~q~Q~r~l~eekadl~a~lq 329 (389)
+|=..+-+-..++.....++| |-+|++=-.+.-.||||||++ +..|-++|--.-..+--++|
T Consensus 690 rql~~vq~~r~e~ir~QHqtE-l~nQ~eYnkRre~ELrrKHamq~RQQPksLK~~elqIrkqfq 752 (948)
T KOG0577|consen 690 RQLNAVQRMRAELIRLQHQTE-LGNQLEYNKRREQELRRKHAMQVRQQPKSLKSKELQIRKQFQ 752 (948)
T ss_pred HHHHHHHHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHHHHHHHHHhCchhhhHHHhhHHHHHH
Confidence 333444444444555555554 667888888999999999975 44555666554444444444
No 223
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=22.20 E-value=5.6e+02 Score=25.97 Aligned_cols=67 Identities=13% Similarity=0.267 Sum_probs=43.7
Q ss_pred HHHHHhhhhhhhhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10418 270 DQMRLKEKELGYRNSDVDNLKRQIDRLTSTVRELRRKQRLSQVQVRGLIDERADFLAALQDHQREVA 336 (389)
Q Consensus 270 deiRak~~el~~k~~evEaLq~Q~~RL~~~n~eLRrk~~~~q~Q~r~l~eekadl~a~lq~~~~ei~ 336 (389)
..+..+...+..-...++..+.++........++..++..++.+....+.++..++..+...+.-+.
T Consensus 214 ~~V~P~~~~l~~a~~~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~ 280 (344)
T PF12777_consen 214 KEVEPKRQKLEEAEAELEEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLE 280 (344)
T ss_dssp CCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 3445556666666666666667666666666777777777777777777777777666655554433
No 224
>PHA03162 hypothetical protein; Provisional
Probab=22.12 E-value=1.4e+02 Score=27.10 Aligned_cols=38 Identities=21% Similarity=0.319 Sum_probs=22.4
Q ss_pred hhHHHHHHHHHHhhhhhhcCCCC-CccCCCCchhhHHHH
Q psy10418 221 MVNRLQEENKKLSKRLEHEGSSP-MKSQQLSPEIDISAL 258 (389)
Q Consensus 221 ~V~qLqeeNk~L~~~ls~~~~~~-~~~~e~~~~~d~~vm 258 (389)
.+.+|+.||+.|...+.+..+.+ +...+.....++++|
T Consensus 21 eL~kLqmENK~LKkkl~~~~~~~~~p~d~~LTp~qKea~ 59 (135)
T PHA03162 21 EIAKLQLENKALKKKIKEGTDDDPLPGDPILTPAAKEAM 59 (135)
T ss_pred HHHHHHHHHHHHHHHHHhccCCCCCCCCccCCHHHHHHH
Confidence 35567779999999997554332 222333334444444
No 225
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=22.00 E-value=4.7e+02 Score=25.78 Aligned_cols=49 Identities=20% Similarity=0.366 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhhhhcc
Q psy10418 286 VDNLKRQIDRLTSTVRELRRKQRLSQVQVRGLIDERADFLAALQDHQREVAALKQQLGLAEKENEDLYNS 355 (389)
Q Consensus 286 vEaLq~Q~~RL~~~n~eLRrk~~~~q~Q~r~l~eekadl~a~lq~~~~ei~~L~~~lg~~~k~~~dl~~~ 355 (389)
+.-+..|=|||..=|.| |++.+..+.+++..|+.++.-.+++|-.|.+.
T Consensus 81 LpIVtsQRDRFR~Rn~E---------------------LE~elr~~~~~~~~L~~Ev~~L~~DN~kLYEK 129 (248)
T PF08172_consen 81 LPIVTSQRDRFRQRNAE---------------------LEEELRKQQQTISSLRREVESLRADNVKLYEK 129 (248)
T ss_pred HHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57788888888877755 56667777777777777777777777777765
No 226
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=21.75 E-value=8.3e+02 Score=24.57 Aligned_cols=24 Identities=13% Similarity=0.419 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy10418 310 SQVQVRGLIDERADFLAALQDHQR 333 (389)
Q Consensus 310 ~q~Q~r~l~eekadl~a~lq~~~~ 333 (389)
+...+..+.+++.++.+++.+.++
T Consensus 242 l~~~i~~~~~~k~~l~~eI~e~~~ 265 (325)
T PF08317_consen 242 LEEKIEELEEQKQELLAEIAEAEK 265 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444455555555555555443
No 227
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=21.71 E-value=1.7e+02 Score=22.49 Aligned_cols=29 Identities=24% Similarity=0.447 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhc
Q psy10418 91 WKEETQQLVEMVNRLQEENKKLSKRLEHE 119 (389)
Q Consensus 91 ~r~E~~eL~~~V~~LqeeN~~L~~~Ls~~ 119 (389)
++.+...|..+++.++.+|..|...+...
T Consensus 22 ~~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 22 LNQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44555666667777777777776666654
No 228
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=21.47 E-value=7.1e+02 Score=23.71 Aligned_cols=138 Identities=19% Similarity=0.238 Sum_probs=87.2
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHhh-hhhHHHHHHHHHHhhhhhhcCCCCCccCCCCchhhHHHHHHHHHHHHHhHHHHH
Q psy10418 195 LKEILHDRNTLKTRLNELEEERQCF-KMVNRLQEENKKLSKRLEHEGSSPMKSQQLSPEIDISALQKLRGQVDSLRDQMR 273 (389)
Q Consensus 195 LreVL~ERNELKa~vf~LqEEl~~~-~~V~qLqeeNk~L~~~ls~~~~~~~~~~e~~~~~d~~vm~kLKe~VdkQRdeiR 273 (389)
--..|.+....+.+.-.++.-+..| +.+..++.+...+... ...+.....+ .-+..|.-.+......|-
T Consensus 26 al~~L~~~~~~~~~~~~~~~~i~~aP~~~~~l~~~l~~l~~~----~~~~~~~~~~------~s~~eLeq~l~~~~~~L~ 95 (240)
T PF12795_consen 26 ALSFLDEIKKQKKRAAEYQKQIDQAPKEIRELQKELEALKSQ----DAPSKEILAN------LSLEELEQRLSQEQAQLQ 95 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhcc----ccccccCccc------CCHHHHHHHHHHHHHHHH
Confidence 3456778888888888888888777 4455555554444333 1011111122 334455556666667777
Q ss_pred HhhhhhhhhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHh
Q psy10418 274 LKEKELGYRNSDVDNLKRQIDRLTSTVRELRRKQRLSQVQVRGL---------IDERADFLAALQDHQREVAALKQQL 342 (389)
Q Consensus 274 ak~~el~~k~~evEaLq~Q~~RL~~~n~eLRrk~~~~q~Q~r~l---------~eekadl~a~lq~~~~ei~~L~~~l 342 (389)
.....|...++.+-.++...+|+...-.+.+++..-+..++..+ --++.-+.|.+.-..-++..++..+
T Consensus 96 ~~q~~l~~~~~~l~~~~~~p~~aq~~l~~~~~~l~ei~~~L~~~~~~~~~~l~~a~~~~l~ae~~~l~~~~~~le~el 173 (240)
T PF12795_consen 96 ELQEQLQQENSQLIEIQTRPERAQQQLSEARQRLQEIRNQLQNLPPNGESPLSEAQRWLLQAELAALEAQIEMLEQEL 173 (240)
T ss_pred HHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHhccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78888888888888888888888888888888877777776653 3344455555555555555555444
No 229
>PRK10722 hypothetical protein; Provisional
Probab=21.39 E-value=5.1e+02 Score=25.87 Aligned_cols=38 Identities=16% Similarity=0.221 Sum_probs=29.1
Q ss_pred HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10418 302 ELRRKQRLS----QVQVRGLIDERADFLAALQDHQREVAALK 339 (389)
Q Consensus 302 eLRrk~~~~----q~Q~r~l~eekadl~a~lq~~~~ei~~L~ 339 (389)
+=|.|+..+ .+|+-.+-++.++++.+|.+..+-+.+|.
T Consensus 162 eEr~Ry~rLQq~sD~qlD~lrqq~~~Lq~~L~~t~rKLEnLT 203 (247)
T PRK10722 162 EERQRYQKLQQSSDSELDALRQQQQRLQYQLELTTRKLENLT 203 (247)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555 68888888888888888888888888777
No 230
>PRK04863 mukB cell division protein MukB; Provisional
Probab=21.04 E-value=1.7e+03 Score=27.83 Aligned_cols=86 Identities=20% Similarity=0.186 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHHhHHHHHHhhhhhhhhhhhHHH-------HHHHHHHHHHhhHHHHHHHHH-------HHHHHHHHHHH
Q psy10418 255 ISALQKLRGQVDSLRDQMRLKEKELGYRNSDVDN-------LKRQIDRLTSTVRELRRKQRL-------SQVQVRGLIDE 320 (389)
Q Consensus 255 ~~vm~kLKe~VdkQRdeiRak~~el~~k~~evEa-------Lq~Q~~RL~~~n~eLRrk~~~-------~q~Q~r~l~ee 320 (389)
++-+..-+..+..+|..+|.+..+|..+-...++ .+..+.+|...-.+.+--... +-.+.|.+-.+
T Consensus 567 ~~~~~~~~~~~~~~~~~~r~~~~qL~~~i~~l~~~ap~W~~a~~al~~L~eq~g~~~~~~~~v~~~mq~~~~~~~~~~~~ 646 (1486)
T PRK04863 567 LESLSESVSEARERRMALRQQLEQLQARIQRLAARAPAWLAAQDALARLREQSGEEFEDSQDVTEYMQQLLERERELTVE 646 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHhhHHHHHHHHHhcchhhcCHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555666777788888888777777766654 567777776655544433222 23355667777
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy10418 321 RADFLAALQDHQREVAALKQ 340 (389)
Q Consensus 321 kadl~a~lq~~~~ei~~L~~ 340 (389)
+....+..+..+.+|..|..
T Consensus 647 ~~~~~~~~~~L~~~i~~l~~ 666 (1486)
T PRK04863 647 RDELAARKQALDEEIERLSQ 666 (1486)
T ss_pred HHHHHHHHHHHHHHHHhhhc
Confidence 88888888888888887774
No 231
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=20.99 E-value=3.4e+02 Score=24.49 Aligned_cols=47 Identities=19% Similarity=0.311 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhhhhc
Q psy10418 301 RELRRKQRLSQVQVRGLIDERADFLAALQDHQREVAALKQQLGLAEKENEDLYN 354 (389)
Q Consensus 301 ~eLRrk~~~~q~Q~r~l~eekadl~a~lq~~~~ei~~L~~~lg~~~k~~~dl~~ 354 (389)
.|+|+.++..++-++- |+++++.++-||..||..|.-+...|.-|.+
T Consensus 83 ~e~qsli~~yE~~~~k-------Le~e~~~Kdsei~~Lr~~L~~~~~~n~~Lek 129 (131)
T PF04859_consen 83 QEQQSLIKTYEIVVKK-------LEAELRAKDSEIDRLREKLDELNRANKSLEK 129 (131)
T ss_pred HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
No 232
>COG3879 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.86 E-value=5.1e+02 Score=25.89 Aligned_cols=10 Identities=20% Similarity=0.378 Sum_probs=6.6
Q ss_pred HHHHHHHHhh
Q psy10418 334 EVAALKQQLG 343 (389)
Q Consensus 334 ei~~L~~~lg 343 (389)
++..|++-.|
T Consensus 97 ~l~~l~~~aG 106 (247)
T COG3879 97 RLEKLRMLAG 106 (247)
T ss_pred HHHHHHHHhc
Confidence 5666776666
No 233
>KOG4005|consensus
Probab=20.69 E-value=8.8e+02 Score=24.46 Aligned_cols=105 Identities=19% Similarity=0.209 Sum_probs=0.0
Q ss_pred hHHHHHHhhhhhhhhhhh---HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-
Q psy10418 268 LRDQMRLKEKELGYRNSD---VDNLKRQIDRLTSTVRELRRKQRLSQVQVRGLIDERADFLAALQDHQREVAALKQQLG- 343 (389)
Q Consensus 268 QRdeiRak~~el~~k~~e---vEaLq~Q~~RL~~~n~eLRrk~~~~q~Q~r~l~eekadl~a~lq~~~~ei~~L~~~lg- 343 (389)
||.+||-..---+.+-.- .+.|-.++--|..-|+-|+-+...++.+-.+|+-+-.++-..|..-.+++..+.+.--
T Consensus 71 ~RrKLKNRVAAQtaRDrKKaRm~eme~~i~dL~een~~L~~en~~Lr~~n~~L~~~n~el~~~le~~~~~l~~~~~~~~~ 150 (292)
T KOG4005|consen 71 QRRKLKNRVAAQTARDRKKARMEEMEYEIKDLTEENEILQNENDSLRAINESLLAKNHELDSELELLRQELAELKQQQQH 150 (292)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHHHHHH
Q ss_pred ---HHHHh-hhhhhccccccCCC-------------------CCCCCCCCCCCCCCCCC
Q psy10418 344 ---LAEKE-NEDLYNSQETTSEE-------------------ERPVQGPLPYEPDDAPW 379 (389)
Q Consensus 344 ---~~~k~-~~dl~~~~~~~~~~-------------------~~pvqgp~p~ep~~~pw 379 (389)
+++.+ -..-....|++-+. -.|.+||+| |
T Consensus 151 ~~~v~eee~~~~gaev~~v~G~~~a~saaa~~~ap~Qqeqa~~~~~~n~~p-------~ 202 (292)
T KOG4005|consen 151 NTRVIEEENASAGAEVWYVTGGHTAVSAAAGGAAPEQQEQALTLESCNPLP-------T 202 (292)
T ss_pred hhHHHhhhhhccCCceEEecCCchhHhHhhcccChhhHhhhhcccccCCcH-------H
No 234
>KOG3335|consensus
Probab=20.55 E-value=2.2e+02 Score=27.08 Aligned_cols=38 Identities=21% Similarity=0.246 Sum_probs=21.3
Q ss_pred HHHHHHHHhh-HHHHhhhhhhccccccCCCCCCCCCCCCCC
Q psy10418 334 EVAALKQQLG-LAEKENEDLYNSQETTSEEERPVQGPLPYE 373 (389)
Q Consensus 334 ei~~L~~~lg-~~~k~~~dl~~~~~~~~~~~~pvqgp~p~e 373 (389)
+|..+++.+. |-++++++-+. +......+|-|||.---
T Consensus 121 ~i~~~~~~~~~L~~~l~~~~~e--l~~~~q~~p~~~~sa~~ 159 (181)
T KOG3335|consen 121 AIAELTKFFSQLHSKLNKPESE--LKPIRQAPPNPGPSAEN 159 (181)
T ss_pred HHHHHHHHHHHHHHHHcCcccc--ccccccCCCCCCchhhc
Confidence 3344444443 33556666554 44456788888887643
No 235
>PF14932 HAUS-augmin3: HAUS augmin-like complex subunit 3
Probab=20.38 E-value=7.9e+02 Score=23.96 Aligned_cols=53 Identities=13% Similarity=0.192 Sum_probs=31.3
Q ss_pred hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10418 284 SDVDNLKRQIDRLTSTVRELRRKQRLSQVQVRGLIDERADFLAALQDHQREVA 336 (389)
Q Consensus 284 ~evEaLq~Q~~RL~~~n~eLRrk~~~~q~Q~r~l~eekadl~a~lq~~~~ei~ 336 (389)
.++++|..+++.|.+...-..++...++...-++-..-..+++...+....+.
T Consensus 68 ~~le~Le~el~~l~~~~~~~~~~~~~lq~~~~~~~~~~~~l~~~~~~~~~~l~ 120 (256)
T PF14932_consen 68 EDLEALEEELEALQEYKELYEQLRNKLQQLDSSLSQELSELEGKEEEAQKKLK 120 (256)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 45666666666666666666666666665555555555555554444444333
No 236
>PF10392 COG5: Golgi transport complex subunit 5; InterPro: IPR019465 The conserved oligomeric Golgi (COG) complex is a peripheral membrane complex involved in intra-Golgi protein trafficking. Subunit 5 is located in the smaller, B lobe, together with subunits 6-8, and has been shown to bind subunits 1 and 7 [].
Probab=20.26 E-value=3.9e+02 Score=23.32 Aligned_cols=56 Identities=27% Similarity=0.343 Sum_probs=44.7
Q ss_pred hHHHHHHHHHHHHHhHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHhhHHHHHHHHHH
Q psy10418 254 DISALQKLRGQVDSLRDQMRLKEKELGYRNSDVDNLKRQIDRLTSTVRELRRKQRLS 310 (389)
Q Consensus 254 d~~vm~kLKe~VdkQRdeiRak~~el~~k~~evEaLq~Q~~RL~~~n~eLRrk~~~~ 310 (389)
+. ++..++.-|..-...+.....++......+..+..++.|+-....=||+=...+
T Consensus 71 ~~-~l~~v~~~v~~L~~s~~RL~~eV~~Py~~~~~~~~~L~rl~~t~~LLR~~~r~l 126 (132)
T PF10392_consen 71 ES-VLQAVRSSVESLQSSYERLRSEVIEPYEKIQKLTSQLERLHQTSDLLRSVSRFL 126 (132)
T ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44 888888888888888888888888888889999999999988886555544443
No 237
>PF09798 LCD1: DNA damage checkpoint protein; InterPro: IPR018622 This is a family of proteins which regulate checkpoint kinases. In Schizosaccharomyces pombe (Fission yeast) this protein is called Rad26 and in Saccharomyces cerevisiae (Baker's yeast) it is called LCD1 [].
Probab=20.22 E-value=2.9e+02 Score=31.19 Aligned_cols=51 Identities=37% Similarity=0.535 Sum_probs=36.7
Q ss_pred hhhhhhHHHHhHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q psy10418 68 LGDHISKLEHEKL------EREVEEIEESWKEETQQLVEMVNRLQEENKKLSKRLEH 118 (389)
Q Consensus 68 L~~~~~qle~Ek~------~~Ele~~Ed~~r~E~~eL~~~V~~LqeeN~~L~~~Ls~ 118 (389)
||+++..|+.+|. ....+++..+..++..-|...|.+|+.|+|=|...+..
T Consensus 2 LRdkL~~Lq~ek~~E~~~l~~~~~~lk~~~~~el~~Lk~~vqkLEDEKKFL~nE~r~ 58 (654)
T PF09798_consen 2 LRDKLELLQQEKQKERQALKSSVEELKESHEEELNKLKSEVQKLEDEKKFLNNELRS 58 (654)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445544444433 55667778888899999999999999988887766654
Done!