Query psy10418
Match_columns 389
No_of_seqs 129 out of 159
Neff 4.6
Searched_HMMs 29240
Date Fri Aug 16 17:23:37 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10418.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/10418hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1yhn_B RILP, RAB interacting l 99.7 5.6E-17 1.9E-21 124.0 6.2 63 191-277 1-63 (65)
2 1i84_S Smooth muscle myosin he 92.7 0.11 3.6E-06 58.7 5.7 70 273-342 1091-1160(1184)
3 1i84_S Smooth muscle myosin he 90.9 0.45 1.5E-05 53.6 8.2 9 101-109 886-894 (1184)
4 3oja_B Anopheles plasmodium-re 90.1 3.7 0.00013 41.7 13.5 75 259-333 505-579 (597)
5 3hnw_A Uncharacterized protein 85.4 3.6 0.00012 35.7 8.6 65 279-343 70-134 (138)
6 3q8t_A Beclin-1; autophagy, AT 83.2 17 0.00058 29.5 12.0 83 258-340 13-95 (96)
7 3hnw_A Uncharacterized protein 82.3 18 0.0006 31.3 11.6 59 259-317 71-129 (138)
8 3na7_A HP0958; flagellar bioge 80.2 37 0.0013 31.4 19.1 18 200-217 25-42 (256)
9 4gkw_A Spindle assembly abnorm 79.4 32 0.0011 30.2 14.5 87 257-347 40-126 (167)
10 3o0z_A RHO-associated protein 75.4 17 0.00057 32.8 9.5 48 272-319 8-55 (168)
11 2oqq_A Transcription factor HY 75.0 7.6 0.00026 27.6 5.6 34 83-116 7-40 (42)
12 2v4h_A NF-kappa-B essential mo 74.1 14 0.00048 31.2 8.1 84 201-302 25-108 (110)
13 3tnu_A Keratin, type I cytoske 73.9 22 0.00075 30.0 9.6 55 258-312 19-73 (131)
14 3vkg_A Dynein heavy chain, cyt 72.1 2.2E+02 0.0074 36.2 25.0 69 89-165 1937-2005(3245)
15 3tnu_B Keratin, type II cytosk 71.7 29 0.001 29.1 9.8 52 259-310 18-69 (129)
16 3qh9_A Liprin-beta-2; coiled-c 70.8 13 0.00043 29.9 6.7 62 188-293 16-77 (81)
17 3ghg_A Fibrinogen alpha chain; 69.6 34 0.0012 35.9 11.4 46 297-342 109-154 (562)
18 3na7_A HP0958; flagellar bioge 68.8 73 0.0025 29.4 17.2 27 193-219 32-58 (256)
19 2dfs_A Myosin-5A; myosin-V, in 68.5 45 0.0016 37.5 13.1 70 262-334 983-1052(1080)
20 3oja_B Anopheles plasmodium-re 68.2 92 0.0031 31.4 14.3 44 300-343 525-568 (597)
21 1zxa_A CGMP-dependent protein 66.5 4.6 0.00016 31.3 3.3 53 249-301 4-56 (67)
22 1deq_A Fibrinogen (alpha chain 66.0 36 0.0012 34.3 10.5 91 249-339 38-154 (390)
23 3vkg_A Dynein heavy chain, cyt 65.9 1.4E+02 0.0047 37.9 17.4 81 254-334 1974-2071(3245)
24 1ik9_A DNA repair protein XRCC 63.6 46 0.0016 30.6 10.1 66 286-351 134-208 (213)
25 1t2k_D Cyclic-AMP-dependent tr 60.6 20 0.00068 26.5 5.8 36 81-116 24-59 (61)
26 2oa5_A Hypothetical protein BQ 60.1 9.5 0.00033 32.2 4.3 43 96-139 11-53 (110)
27 3cvf_A Homer-3, homer protein 58.8 48 0.0016 26.3 8.0 50 268-320 7-56 (79)
28 2dfs_A Myosin-5A; myosin-V, in 57.7 68 0.0023 36.1 12.0 40 268-307 975-1014(1080)
29 2akf_A Coronin-1A; coiled coil 57.2 10 0.00036 25.1 3.2 18 137-154 14-31 (32)
30 2v71_A Nuclear distribution pr 57.0 1.2E+02 0.004 27.7 18.6 142 188-342 3-153 (189)
31 1t6f_A Geminin; coiled-coil, c 55.9 23 0.00078 24.4 4.8 33 195-233 2-34 (37)
32 1c1g_A Tropomyosin; contractIl 54.8 1E+02 0.0035 26.4 30.8 34 309-342 220-253 (284)
33 3nmd_A CGMP dependent protein 54.6 17 0.00059 28.5 4.7 42 258-299 21-69 (72)
34 1m1j_C Fibrinogen gamma chain; 53.9 91 0.0031 31.5 11.1 82 262-343 26-115 (409)
35 1ci6_A Transcription factor AT 53.7 31 0.0011 25.8 5.9 37 81-117 25-61 (63)
36 3a7p_A Autophagy protein 16; c 52.3 95 0.0033 27.5 9.6 103 195-320 30-132 (152)
37 3tnu_B Keratin, type II cytosk 52.3 1E+02 0.0035 25.7 10.4 66 269-337 35-100 (129)
38 1c1g_A Tropomyosin; contractIl 52.2 1.1E+02 0.0038 26.1 30.9 59 285-343 210-268 (284)
39 2jee_A YIIU; FTSZ, septum, coi 51.9 90 0.0031 24.9 9.8 52 277-328 20-71 (81)
40 2eqb_B RAB guanine nucleotide 51.6 98 0.0034 25.5 9.0 58 285-342 6-63 (97)
41 3m91_A Proteasome-associated A 50.9 48 0.0016 24.2 6.3 41 93-148 9-49 (51)
42 3u1c_A Tropomyosin alpha-1 cha 49.3 1E+02 0.0035 24.9 13.1 48 299-346 45-99 (101)
43 2wt7_A Proto-oncogene protein 48.2 45 0.0015 24.8 6.0 36 82-117 26-61 (63)
44 3bas_A Myosin heavy chain, str 47.3 1E+02 0.0035 24.3 11.1 41 285-332 22-62 (89)
45 2l7b_A Apolipoprotein E, APO-E 45.7 2.1E+02 0.0073 27.5 19.8 40 335-374 266-306 (307)
46 2w6a_A ARF GTPase-activating p 45.5 37 0.0013 25.9 5.0 33 82-114 30-62 (63)
47 1j1d_B Troponin T, TNT; THIN f 45.3 56 0.0019 27.2 6.7 43 301-343 45-87 (106)
48 3tnu_A Keratin, type I cytoske 45.1 1.3E+02 0.0045 25.2 9.2 66 269-337 37-102 (131)
49 1ytz_T Troponin T; muscle, THI 44.6 55 0.0019 27.3 6.5 42 302-343 46-87 (107)
50 2yy0_A C-MYC-binding protein; 43.5 35 0.0012 25.0 4.6 28 90-117 23-50 (53)
51 3s4r_A Vimentin; alpha-helix, 43.3 1.3E+02 0.0043 24.2 9.1 34 206-239 8-42 (93)
52 1jnm_A Proto-oncogene C-JUN; B 41.5 30 0.001 25.6 4.1 36 81-116 24-59 (62)
53 2oa5_A Hypothetical protein BQ 40.9 1.2E+02 0.004 25.6 7.9 19 221-239 16-34 (110)
54 3swk_A Vimentin; cytoskeleton, 40.7 97 0.0033 24.5 7.2 24 316-339 60-83 (86)
55 3o0z_A RHO-associated protein 40.5 1.7E+02 0.0059 26.2 9.6 66 82-154 93-158 (168)
56 1j1d_C Troponin I, TNI; THIN f 39.5 69 0.0024 27.7 6.6 43 301-343 61-103 (133)
57 3lay_A Zinc resistance-associa 39.4 1E+02 0.0035 27.6 8.0 21 310-330 111-131 (175)
58 1uii_A Geminin; human, DNA rep 38.8 52 0.0018 26.5 5.3 36 194-235 40-75 (83)
59 3oja_A Leucine-rich immune mol 38.2 3E+02 0.01 27.0 15.0 53 254-306 405-457 (487)
60 1hjb_A Ccaat/enhancer binding 38.0 69 0.0024 25.7 6.0 42 81-122 38-79 (87)
61 2p22_A Suppressor protein STP2 37.9 2.2E+02 0.0076 25.5 10.1 78 252-335 8-86 (174)
62 1gu4_A CAAT/enhancer binding p 35.8 84 0.0029 24.7 6.0 38 81-118 38-75 (78)
63 2zxx_A Geminin; coiled-coil, c 35.7 42 0.0014 26.7 4.2 39 194-238 28-66 (79)
64 3u59_A Tropomyosin beta chain; 35.6 1.7E+02 0.0058 23.4 12.6 50 297-346 43-99 (101)
65 3qh9_A Liprin-beta-2; coiled-c 35.0 1.7E+02 0.0059 23.3 8.0 54 63-118 26-79 (81)
66 3m91_A Proteasome-associated A 34.9 1.2E+02 0.0041 22.1 6.3 34 309-342 13-46 (51)
67 2e7s_A RAB guanine nucleotide 34.9 1.1E+02 0.0037 26.6 7.1 82 258-339 48-130 (135)
68 1go4_E MAD1 (mitotic arrest de 34.1 2E+02 0.0068 23.7 8.3 56 62-117 11-92 (100)
69 3uun_A Dystrophin; triple heli 33.9 1.6E+02 0.0054 22.6 8.6 37 263-299 36-72 (119)
70 1m1j_A Fibrinogen alpha subuni 33.6 1.9E+02 0.0063 30.0 9.6 92 249-340 36-153 (491)
71 1ci6_A Transcription factor AT 33.0 78 0.0027 23.6 5.2 33 285-317 24-56 (63)
72 3trt_A Vimentin; cytoskeleton, 31.7 1.6E+02 0.0056 22.0 8.8 62 271-339 13-76 (77)
73 1j1e_C Troponin I, TNI; THIN f 30.9 1E+02 0.0036 27.9 6.6 43 301-343 61-103 (180)
74 3uul_A Utrophin; spectrin repe 30.6 1.8E+02 0.0063 22.3 8.5 37 263-299 36-72 (118)
75 3cve_A Homer protein homolog 1 30.6 1.9E+02 0.0065 22.5 8.8 31 289-319 19-49 (72)
76 2xdj_A Uncharacterized protein 30.6 2E+02 0.0068 22.7 8.3 20 286-305 29-48 (83)
77 1uii_A Geminin; human, DNA rep 30.5 1.6E+02 0.0056 23.6 6.9 49 263-311 32-80 (83)
78 3lay_A Zinc resistance-associa 30.4 2.7E+02 0.0093 24.8 9.3 74 264-354 68-142 (175)
79 1dip_A Delta-sleep-inducing pe 30.3 97 0.0033 24.5 5.4 30 90-119 19-48 (78)
80 4h22_A Leucine-rich repeat fli 29.5 1.7E+02 0.0057 24.4 7.1 48 261-315 35-82 (103)
81 4dyl_A Tyrosine-protein kinase 29.4 3E+02 0.01 27.0 10.3 70 259-330 305-374 (406)
82 1gmj_A ATPase inhibitor; coile 29.4 1.9E+02 0.0066 23.2 7.2 50 254-306 31-80 (84)
83 2fup_A Hypothetical protein PA 28.9 2.1E+02 0.0071 23.7 7.9 123 252-378 13-145 (157)
84 1t2k_D Cyclic-AMP-dependent tr 28.7 1E+02 0.0036 22.5 5.2 33 285-317 23-55 (61)
85 1wlq_A Geminin; coiled-coil; 2 28.4 72 0.0025 25.6 4.5 39 194-238 32-70 (83)
86 2yy0_A C-MYC-binding protein; 28.3 89 0.003 22.8 4.7 28 284-318 19-46 (53)
87 3i00_A HIP-I, huntingtin-inter 27.8 2.7E+02 0.0093 23.4 9.7 62 279-343 17-78 (120)
88 3efg_A Protein SLYX homolog; x 27.7 1.4E+02 0.0049 23.2 6.1 59 307-365 14-75 (78)
89 1x8y_A Lamin A/C; structural p 26.4 1.2E+02 0.0041 23.8 5.6 26 284-309 3-28 (86)
90 2wt7_A Proto-oncogene protein 26.1 2E+02 0.0067 21.2 7.8 33 285-317 24-56 (63)
91 1nkp_B MAX protein, MYC proto- 26.1 67 0.0023 24.7 4.0 27 288-314 51-77 (83)
92 3ghg_A Fibrinogen alpha chain; 26.0 3.9E+02 0.013 28.1 10.6 24 305-328 131-154 (562)
93 3geb_A EYES absent homolog 2; 25.8 8.8 0.0003 37.0 -1.5 30 6-36 200-231 (274)
94 1wlq_A Geminin; coiled-coil; 2 24.8 1.9E+02 0.0066 23.1 6.4 50 262-311 23-72 (83)
95 1dh3_A Transcription factor CR 23.7 96 0.0033 22.6 4.2 24 95-118 24-47 (55)
96 2wvr_A Geminin; DNA replicatio 23.5 1.1E+02 0.0036 28.5 5.3 39 194-238 109-147 (209)
97 3a7p_A Autophagy protein 16; c 23.5 3.8E+02 0.013 23.6 9.4 15 268-282 36-50 (152)
98 3gp4_A Transcriptional regulat 23.4 2.9E+02 0.01 23.1 7.8 61 190-285 60-131 (142)
99 4h22_A Leucine-rich repeat fli 23.3 2.1E+02 0.0073 23.7 6.6 8 302-309 52-59 (103)
100 2v71_A Nuclear distribution pr 23.3 4.2E+02 0.014 24.0 16.7 20 313-332 138-157 (189)
101 2xdj_A Uncharacterized protein 22.7 2.8E+02 0.0097 21.8 8.2 37 289-325 25-61 (83)
102 1ytz_I Troponin I; muscle, THI 22.7 1.2E+02 0.0042 27.5 5.5 42 302-343 59-100 (182)
103 1deq_A Fibrinogen (alpha chain 21.9 6.2E+02 0.021 25.5 11.4 28 194-221 53-81 (390)
104 1nkp_B MAX protein, MYC proto- 21.9 1.8E+02 0.0062 22.2 5.7 33 87-119 48-80 (83)
105 3a2a_A Voltage-gated hydrogen 21.6 2.6E+02 0.0088 20.9 6.2 38 291-342 11-48 (58)
106 3nmd_A CGMP dependent protein 21.5 2E+02 0.0068 22.5 5.7 46 263-308 19-64 (72)
107 3ol1_A Vimentin; structural ge 21.0 3.5E+02 0.012 22.3 12.3 59 282-340 39-104 (119)
108 1jnm_A Proto-oncogene C-JUN; B 20.4 2.5E+02 0.0087 20.4 6.1 33 285-317 23-55 (62)
109 2wuj_A Septum site-determining 20.2 1.5E+02 0.005 21.6 4.6 34 81-114 22-55 (57)
110 3ibp_A Chromosome partition pr 20.1 6.1E+02 0.021 24.7 10.1 90 194-298 11-104 (302)
No 1
>1yhn_B RILP, RAB interacting lysosomal protein; protein transport; HET: GTP; 3.00A {Homo sapiens} SCOP: h.1.34.1
Probab=99.67 E-value=5.6e-17 Score=124.01 Aligned_cols=63 Identities=27% Similarity=0.428 Sum_probs=56.1
Q ss_pred cHHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhhcCCCCCccCCCCchhhHHHHHHHHHHHHHhHH
Q psy10418 191 TTAELKEILHDRNTLKTRLNELEEERQCFKMVNRLQEENKKLSKRLEHEGSSPMKSQQLSPEIDISALQKLRGQVDSLRD 270 (389)
Q Consensus 191 Tl~ELreVL~ERNELKa~vf~LqEEl~~~~~V~qLqeeNk~L~~~ls~~~~~~~~~~e~~~~~d~~vm~kLKe~VdkQRd 270 (389)
|++|||+|||||||||++||+|+|||+||++ + ..+.+++|. .+|..+|.+|.|||.
T Consensus 1 T~~Elr~iLqERNELKa~vf~lqeEL~yY~~------e---------------~l~~~~~p~---~ll~a~k~aikkqr~ 56 (65)
T 1yhn_B 1 SREEFEQILQERNELKAKVFLLKEELAYFQR------E---------------LLTDHRVPS---LLLEAMKVAVRKQRK 56 (65)
T ss_dssp CCTTHHHHHHHHHHHHHHHHHHHHHHHHHHH------H---------------HSSTTCCCH---HHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhh------c---------------cCCcccccH---HHHHHHHHHHHHHHH
Confidence 7899999999999999999999999999997 1 224557787 999999999999999
Q ss_pred HHHHhhh
Q psy10418 271 QMRLKEK 277 (389)
Q Consensus 271 eiRak~~ 277 (389)
.|+||+-
T Consensus 57 ~ikakml 63 (65)
T 1yhn_B 57 KIKAKML 63 (65)
T ss_dssp HHHHHHH
T ss_pred HHHHHHc
Confidence 9999973
No 2
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=92.71 E-value=0.11 Score=58.67 Aligned_cols=70 Identities=23% Similarity=0.199 Sum_probs=0.0
Q ss_pred HHhhhhhhhhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy10418 273 RLKEKELGYRNSDVDNLKRQIDRLTSTVRELRRKQRLSQVQVRGLIDERADFLAALQDHQREVAALKQQL 342 (389)
Q Consensus 273 Rak~~el~~k~~evEaLq~Q~~RL~~~n~eLRrk~~~~q~Q~r~l~eekadl~a~lq~~~~ei~~L~~~l 342 (389)
+....++......++.++.++..+.+-..+|..+...+..++...-.++..+..+..+.++++..|+.++
T Consensus 1091 ~~le~el~~l~~~le~l~~~~~~le~~l~~Le~eie~L~eeLee~~~~~~~le~q~~~L~~ele~L~~~I 1160 (1184)
T 1i84_S 1091 AKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQEDLESEKAARNKAEKQKRDLSEELEALKTEL 1160 (1184)
T ss_dssp ----------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333333333333333333334444444445555555555544
No 3
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=90.93 E-value=0.45 Score=53.62 Aligned_cols=9 Identities=33% Similarity=0.305 Sum_probs=3.3
Q ss_pred HHHHHHHHH
Q psy10418 101 MVNRLQEEN 109 (389)
Q Consensus 101 ~V~~LqeeN 109 (389)
++..|+.+.
T Consensus 886 ~l~~Le~e~ 894 (1184)
T 1i84_S 886 KHTQLCEEK 894 (1184)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 4
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=90.10 E-value=3.7 Score=41.67 Aligned_cols=75 Identities=13% Similarity=0.179 Sum_probs=53.3
Q ss_pred HHHHHHHHHhHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10418 259 QKLRGQVDSLRDQMRLKEKELGYRNSDVDNLKRQIDRLTSTVRELRRKQRLSQVQVRGLIDERADFLAALQDHQR 333 (389)
Q Consensus 259 ~kLKe~VdkQRdeiRak~~el~~k~~evEaLq~Q~~RL~~~n~eLRrk~~~~q~Q~r~l~eekadl~a~lq~~~~ 333 (389)
.+++.++.+-+..+.....++.....++++.+.+.+.+.+-..+++++..-.+.++..+.++-+.+.++++..+.
T Consensus 505 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~ 579 (597)
T 3oja_B 505 DNLNKVFTHLKERQAFKLRETQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEA 579 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666777777777777777888888888888888888888877777777777666666555555443
No 5
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=85.42 E-value=3.6 Score=35.72 Aligned_cols=65 Identities=14% Similarity=0.229 Sum_probs=38.9
Q ss_pred hhhhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy10418 279 LGYRNSDVDNLKRQIDRLTSTVRELRRKQRLSQVQVRGLIDERADFLAALQDHQREVAALKQQLG 343 (389)
Q Consensus 279 l~~k~~evEaLq~Q~~RL~~~n~eLRrk~~~~q~Q~r~l~eekadl~a~lq~~~~ei~~L~~~lg 343 (389)
+-....+++.|..+++.+.+-..+|.|.....+.+...+-.+..++...+...++++..|...++
T Consensus 70 l~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~~~~ 134 (138)
T 3hnw_A 70 YFKAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLETELN 134 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344445566666666666666666666666666666666666666666666666666655544
No 6
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=83.22 E-value=17 Score=29.53 Aligned_cols=83 Identities=18% Similarity=0.189 Sum_probs=68.9
Q ss_pred HHHHHHHHHHhHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10418 258 LQKLRGQVDSLRDQMRLKEKELGYRNSDVDNLKRQIDRLTSTVRELRRKQRLSQVQVRGLIDERADFLAALQDHQREVAA 337 (389)
Q Consensus 258 m~kLKe~VdkQRdeiRak~~el~~k~~evEaLq~Q~~RL~~~n~eLRrk~~~~q~Q~r~l~eekadl~a~lq~~~~ei~~ 337 (389)
|..|+.-=.+.-.+|...+++=.....+++++..+..+|-.-....-|.++..+.|+-.+.+++.-+.+++.-.+..+..
T Consensus 13 L~~l~~eE~~L~~eL~~lEke~~~l~~el~~le~E~~~L~~eE~~~w~eyn~~~~ql~e~~dE~~Sl~~q~~~~~~qLdk 92 (96)
T 3q8t_A 13 LKELALEEERLIQELEDVEKNRKVVAENLEKVQAEAERLDQEEAQYQREYSEFKRQQLELDDELKSVENQMRYAQMQLDK 92 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555556667777777777788899999999999999999999999999999999999999999999988888887
Q ss_pred HHH
Q psy10418 338 LKQ 340 (389)
Q Consensus 338 L~~ 340 (389)
|++
T Consensus 93 L~K 95 (96)
T 3q8t_A 93 LKK 95 (96)
T ss_dssp HHT
T ss_pred hhc
Confidence 764
No 7
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=82.33 E-value=18 Score=31.33 Aligned_cols=59 Identities=19% Similarity=0.182 Sum_probs=44.1
Q ss_pred HHHHHHHHHhHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q psy10418 259 QKLRGQVDSLRDQMRLKEKELGYRNSDVDNLKRQIDRLTSTVRELRRKQRLSQVQVRGL 317 (389)
Q Consensus 259 ~kLKe~VdkQRdeiRak~~el~~k~~evEaLq~Q~~RL~~~n~eLRrk~~~~q~Q~r~l 317 (389)
.+++..++..+.+|..+..++.....++..++.+++-+.+-+.+|+++...++.|+.-|
T Consensus 71 ~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~l 129 (138)
T 3hnw_A 71 FKAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKL 129 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566677777777777777777777777778877777777777777777777776655
No 8
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=80.16 E-value=37 Score=31.42 Aligned_cols=18 Identities=6% Similarity=0.086 Sum_probs=7.5
Q ss_pred HhhHHHHHHHHHHHHHHH
Q psy10418 200 HDRNTLKTRLNELEEERQ 217 (389)
Q Consensus 200 ~ERNELKa~vf~LqEEl~ 217 (389)
+.+..|.+.|..++.++.
T Consensus 25 ~~~~~lp~el~~le~~~~ 42 (256)
T 3na7_A 25 PLIREKRKDLDKALNDKE 42 (256)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHH
Confidence 334444444444444443
No 9
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=79.44 E-value=32 Score=30.19 Aligned_cols=87 Identities=21% Similarity=0.361 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHhHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10418 257 ALQKLRGQVDSLRDQMRLKEKELGYRNSDVDNLKRQIDRLTSTVRELRRKQRLSQVQVRGLIDERADFLAALQDHQREVA 336 (389)
Q Consensus 257 vm~kLKe~VdkQRdeiRak~~el~~k~~evEaLq~Q~~RL~~~n~eLRrk~~~~q~Q~r~l~eekadl~a~lq~~~~ei~ 336 (389)
+|..=...||+....=-+..+||+....+.+.+|.-++. .-..| .|..+-|+|---=+..-.+|+|+|.++.-=+.
T Consensus 40 ML~EEqgKVDQlqKRn~~HQKEi~~Lrae~~~~QRn~~K---~~~~L-krn~~qQnQQSlDiRKLrELEADLKEKDsMVe 115 (167)
T 4gkw_A 40 MLREEQGKVDQLQKRNVAHQKEIGKLRAELGTAQRNLEK---ADQLL-KRNSQQQNQQSLDMRKLGELEADLKEKDSMVE 115 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHH-HHHHHHHHHHHHHHHHTHHHHHTHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHhHHH---HHHHH-HhhhHHHhHhhhhHHHHHHHHhHHhhhhHHHH
Confidence 344446778887777778888898888888888875544 33333 45567777766666777899999999988888
Q ss_pred HHHHHhhHHHH
Q psy10418 337 ALKQQLGLAEK 347 (389)
Q Consensus 337 ~L~~~lg~~~k 347 (389)
.|..-+|+..|
T Consensus 116 ~LT~TiG~LrK 126 (167)
T 4gkw_A 116 SLTETIGILRK 126 (167)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 88888884433
No 10
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=75.44 E-value=17 Score=32.80 Aligned_cols=48 Identities=17% Similarity=0.125 Sum_probs=21.0
Q ss_pred HHHhhhhhhhhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q psy10418 272 MRLKEKELGYRNSDVDNLKRQIDRLTSTVRELRRKQRLSQVQVRGLID 319 (389)
Q Consensus 272 iRak~~el~~k~~evEaLq~Q~~RL~~~n~eLRrk~~~~q~Q~r~l~e 319 (389)
|....++|..-|.=.-+-.+-..||.|++.|++-.......-++-|.+
T Consensus 8 i~~LekQL~E~n~kLk~EsE~~~rlkK~~tEl~k~~~~~E~~~rELq~ 55 (168)
T 3o0z_A 8 LSQLQKQLEEANDLLRTESDTAVRLRKSHTEMSKSISQLESLNRELQE 55 (168)
T ss_dssp --CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444555555555555444444433333333
No 11
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=75.01 E-value=7.6 Score=27.58 Aligned_cols=34 Identities=29% Similarity=0.392 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy10418 83 EVEEIEESWKEETQQLVEMVNRLQEENKKLSKRL 116 (389)
Q Consensus 83 Ele~~Ed~~r~E~~eL~~~V~~LqeeN~~L~~~L 116 (389)
+||.-...+...+.+|...|+.|+.||..|..-+
T Consensus 7 eLE~r~k~le~~naeLEervstLq~EN~mLRqvl 40 (42)
T 2oqq_A 7 ELENRVKDLENKNSELEERLSTLQNENQMLRHIL 40 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHh
Confidence 5666666777888899999999999999997655
No 12
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=74.08 E-value=14 Score=31.20 Aligned_cols=84 Identities=17% Similarity=0.234 Sum_probs=53.0
Q ss_pred hhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhhcCCCCCccCCCCchhhHHHHHHHHHHHHHhHHHHHHhhhhhh
Q psy10418 201 DRNTLKTRLNELEEERQCFKMVNRLQEENKKLSKRLEHEGSSPMKSQQLSPEIDISALQKLRGQVDSLRDQMRLKEKELG 280 (389)
Q Consensus 201 ERNELKa~vf~LqEEl~~~~~V~qLqeeNk~L~~~ls~~~~~~~~~~e~~~~~d~~vm~kLKe~VdkQRdeiRak~~el~ 280 (389)
+=|.|+++|-..++=|...+. +-.+|...+... ..+.+.|.-|+-.|+=.|..-.|--..=.
T Consensus 25 ei~~L~~~L~~AEeaL~~Kq~------~idelk~ei~q~------------~~~lE~I~vLkaQv~IY~~DF~aERadRE 86 (110)
T 2v4h_A 25 QLEDLRQQLQQAEEALVAKQE------LIDKLKEEAEQH------------KIVMETVPVLKAQADIYKADFQAERHARE 86 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHH------------HHHHTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHccchhhHH
Confidence 346789999988888875432 222222222211 23455677778888777777776555555
Q ss_pred hhhhhHHHHHHHHHHHHHhhHH
Q psy10418 281 YRNSDVDNLKRQIDRLTSTVRE 302 (389)
Q Consensus 281 ~k~~evEaLq~Q~~RL~~~n~e 302 (389)
-.+.+.+.|+.|+..|.+-|..
T Consensus 87 kl~~eKe~L~~ql~~Lq~q~~~ 108 (110)
T 2v4h_A 87 KLVEKKEYLQEQLEQLQREFNK 108 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHhHHHHHHHHHHHHHHHHHh
Confidence 5566788888888887776654
No 13
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=73.94 E-value=22 Score=30.04 Aligned_cols=55 Identities=13% Similarity=0.146 Sum_probs=22.5
Q ss_pred HHHHHHHHHHhHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q psy10418 258 LQKLRGQVDSLRDQMRLKEKELGYRNSDVDNLKRQIDRLTSTVRELRRKQRLSQV 312 (389)
Q Consensus 258 m~kLKe~VdkQRdeiRak~~el~~k~~evEaLq~Q~~RL~~~n~eLRrk~~~~q~ 312 (389)
+..|+..|.+..+.+++-..|+...+.-|..|+.+++-+.+++.-|-..+.-++.
T Consensus 19 ~eel~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~~l~~~~~sLE~~l~e~e~ 73 (131)
T 3tnu_A 19 TEELNREVATNSELVQSGKSEISELRRTMQNLEIELQSQLSMKASLENSLEETKG 73 (131)
T ss_dssp ----------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 4456777888888888877788887777777777777777777666555544444
No 14
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=72.14 E-value=2.2e+02 Score=36.18 Aligned_cols=69 Identities=12% Similarity=0.106 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccc
Q psy10418 89 ESWKEETQQLVEMVNRLQEENKKLSKRLEHEGSSPMKSQQLSPEIDISVLQKLRGQVDSLRDQMRLKEKELGYRNSD 165 (389)
Q Consensus 89 d~~r~E~~eL~~~V~~LqeeN~~L~~~Ls~~~~~~~~~~~~~~e~er~vm~kLKe~VdkQRDeiRake~eL~~k~~d 165 (389)
+.++.+...++..++.-..+...+...+..... ..+..+..+.+.++.+.++..++.++-.+......+
T Consensus 1937 ~~l~~~L~~~~~~L~~k~~ea~~~l~~i~~~~~--------~ae~~k~~v~~~~~~~~~~~~ei~~~k~~~e~dL~~ 2005 (3245)
T 3vkg_A 1937 KDLQVSLAQKNRELDVKNEQANQKLKQMVQDQQ--------AAEIKQKDARELQVQLDVRNKEIAVQKVKAYADLEK 2005 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345555555555555555555555554443211 134466677777777888777777755544444333
No 15
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=71.73 E-value=29 Score=29.13 Aligned_cols=52 Identities=17% Similarity=0.277 Sum_probs=20.4
Q ss_pred HHHHHHHHHhHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHhhHHHHHHHHHH
Q psy10418 259 QKLRGQVDSLRDQMRLKEKELGYRNSDVDNLKRQIDRLTSTVRELRRKQRLS 310 (389)
Q Consensus 259 ~kLKe~VdkQRdeiRak~~el~~k~~evEaLq~Q~~RL~~~n~eLRrk~~~~ 310 (389)
..|+..|.+..+.+++-..|+...+.-|..|+..++-+.++|.-|-..+.-+
T Consensus 18 eel~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e~ 69 (129)
T 3tnu_B 18 EELQQTAGRHGDDLRNTKHEISEMNRMIQRLRAEIDNVKKQCANLQNAIADA 69 (129)
T ss_dssp ----------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 3455666666666666666666666666666666665555555554444333
No 16
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=70.79 E-value=13 Score=29.92 Aligned_cols=62 Identities=24% Similarity=0.499 Sum_probs=46.1
Q ss_pred CcccHHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhhcCCCCCccCCCCchhhHHHHHHHHHHHHH
Q psy10418 188 PRFTTAELKEILHDRNTLKTRLNELEEERQCFKMVNRLQEENKKLSKRLEHEGSSPMKSQQLSPEIDISALQKLRGQVDS 267 (389)
Q Consensus 188 PrFTl~ELreVL~ERNELKa~vf~LqEEl~~~~~V~qLqeeNk~L~~~ls~~~~~~~~~~e~~~~~d~~vm~kLKe~Vdk 267 (389)
+||...| ++++|=|+|+-+|-.++-|-..|-. |||.+-
T Consensus 16 e~~~~~E--~L~qEi~~Lr~kv~elEnErlQyEk--------------------------------------KLKsTK-- 53 (81)
T 3qh9_A 16 EKQRKAE--ELLQELRHLKIKVEELENERNQYEW--------------------------------------KLKATK-- 53 (81)
T ss_dssp HHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHH--------------------------------------HHHHHH--
T ss_pred HHHhhHH--HHHHHHHHHHHHHHHHHHHHHHHHH--------------------------------------HHhhhH--
Confidence 3454433 8999999999999999988877753 223322
Q ss_pred hHHHHHHhhhhhhhhhhhHHHHHHHH
Q psy10418 268 LRDQMRLKEKELGYRNSDVDNLKRQI 293 (389)
Q Consensus 268 QRdeiRak~~el~~k~~evEaLq~Q~ 293 (389)
++|-....+|..+..+|+.|+.|+
T Consensus 54 --~El~~Lq~qLe~kd~ei~rL~~~l 77 (81)
T 3qh9_A 54 --AEVAQLQEQVALKDAEIERLHSQL 77 (81)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHhhHHHHHHHHHHH
Confidence 677777788888888888888876
No 17
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=69.64 E-value=34 Score=35.91 Aligned_cols=46 Identities=9% Similarity=0.145 Sum_probs=37.0
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy10418 297 TSTVRELRRKQRLSQVQVRGLIDERADFLAALQDHQREVAALKQQL 342 (389)
Q Consensus 297 ~~~n~eLRrk~~~~q~Q~r~l~eekadl~a~lq~~~~ei~~L~~~l 342 (389)
..+..||||++..++.-+.+-+...+-|++.|.++-.+|..|---+
T Consensus 109 nE~S~ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQRLEvDI 154 (562)
T 3ghg_A 109 NRVSEDLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDI 154 (562)
T ss_dssp HHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445699999999988888888888889999998888888775433
No 18
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=68.83 E-value=73 Score=29.42 Aligned_cols=27 Identities=26% Similarity=0.477 Sum_probs=17.6
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHhh
Q psy10418 193 AELKEILHDRNTLKTRLNELEEERQCF 219 (389)
Q Consensus 193 ~ELreVL~ERNELKa~vf~LqEEl~~~ 219 (389)
.||.++-.+...+++.+-.++.++..+
T Consensus 32 ~el~~le~~~~~l~~~~~~~~~~l~d~ 58 (256)
T 3na7_A 32 KDLDKALNDKEAKNKAILNLEEEKLAL 58 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466666666666666666666666544
No 19
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=68.48 E-value=45 Score=37.51 Aligned_cols=70 Identities=19% Similarity=0.229 Sum_probs=41.1
Q ss_pred HHHHHHhHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10418 262 RGQVDSLRDQMRLKEKELGYRNSDVDNLKRQIDRLTSTVRELRRKQRLSQVQVRGLIDERADFLAALQDHQRE 334 (389)
Q Consensus 262 Ke~VdkQRdeiRak~~el~~k~~evEaLq~Q~~RL~~~n~eLRrk~~~~q~Q~r~l~eekadl~a~lq~~~~e 334 (389)
+..|....++|.....++.....+.+++++..+.+. .+|.-|.+-++.....|-++..|++..+++++++
T Consensus 983 ~~~v~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~---~~L~~kv~~L~~e~~~L~qq~~~l~~~~~~~~~~ 1052 (1080)
T 2dfs_A 983 TNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYK---HETEQLVSELKEQNTLLKTEKEELNRRIHDQAKE 1052 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555555555555555555555555554 3666666666666666666666777666666654
No 20
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=68.16 E-value=92 Score=31.35 Aligned_cols=44 Identities=18% Similarity=0.237 Sum_probs=28.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy10418 300 VRELRRKQRLSQVQVRGLIDERADFLAALQDHQREVAALKQQLG 343 (389)
Q Consensus 300 n~eLRrk~~~~q~Q~r~l~eekadl~a~lq~~~~ei~~L~~~lg 343 (389)
+..+.......+.+.+.+-+++..++..++.+.+.+..++++..
T Consensus 525 ~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~ 568 (597)
T 3oja_B 525 TQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETS 568 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHH
Confidence 33333344444555566667777788877777777777777776
No 21
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=66.48 E-value=4.6 Score=31.33 Aligned_cols=53 Identities=15% Similarity=0.219 Sum_probs=32.2
Q ss_pred CCchhhHHHHHHHHHHHHHhHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHhhH
Q psy10418 249 LSPEIDISALQKLRGQVDSLRDQMRLKEKELGYRNSDVDNLKRQIDRLTSTVR 301 (389)
Q Consensus 249 ~~~~~d~~vm~kLKe~VdkQRdeiRak~~el~~k~~evEaLq~Q~~RL~~~n~ 301 (389)
|+|...-.++..+-..+...-..|++.+.+|..+..+|..|+.+++++..|..
T Consensus 4 ~~~~~~~~~~e~~~~~i~~Kde~I~eLE~~L~~kd~eI~eLr~~LdK~qsVl~ 56 (67)
T 1zxa_A 4 GIPGSTSELEEDFAKILMLKEERIKELEKRLSEKEEEIQELKRKLHKCQSVLP 56 (67)
T ss_dssp -------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred CCCCcchHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 44445556677777777777777888889999999999999999999998875
No 22
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=65.99 E-value=36 Score=34.31 Aligned_cols=91 Identities=10% Similarity=0.186 Sum_probs=59.2
Q ss_pred CCchhhHHHH----HHHHHHHHHhHHHHHHhhhhhhhhhhhHHHHHHHHHH----------------------HHHhhHH
Q psy10418 249 LSPEIDISAL----QKLRGQVDSLRDQMRLKEKELGYRNSDVDNLKRQIDR----------------------LTSTVRE 302 (389)
Q Consensus 249 ~~~~~d~~vm----~kLKe~VdkQRdeiRak~~el~~k~~evEaLq~Q~~R----------------------L~~~n~e 302 (389)
+|...|+-++ .+|+.++|+|...|+-...+|...-.+.......++. +..++.+
T Consensus 38 ~C~DeDwG~kCPsGCrLqg~Ldk~er~~~~rIe~L~~~L~~~s~s~~~~~~y~~~~~~~lk~~~~q~~dndn~~~e~s~e 117 (390)
T 1deq_A 38 FCSDEDWNTKCPSGCRMKGLIDEVDQDFTSRINKLRDSLFNYQKNSKDSNTLTKNIVELMRGDFAKANNNDNTFKQINED 117 (390)
T ss_pred CCchhhccCCCCccchHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHH
Confidence 4555555552 3466777777777766666666655555444444433 3445679
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10418 303 LRRKQRLSQVQVRGLIDERADFLAALQDHQREVAALK 339 (389)
Q Consensus 303 LRrk~~~~q~Q~r~l~eekadl~a~lq~~~~ei~~L~ 339 (389)
||+++..++--+.+-|..=.-|+..|.++--+|..|-
T Consensus 118 Le~~i~~lk~~V~~q~~~ir~Lq~~l~~q~~kiqRLE 154 (390)
T 1deq_A 118 LRSRIEILRRKVIEQVQRINLLQKNVRDQLVDMKRLE 154 (390)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999888887777766667777777777666664
No 23
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=65.94 E-value=1.4e+02 Score=37.87 Aligned_cols=81 Identities=14% Similarity=0.189 Sum_probs=43.2
Q ss_pred hHHHHHHHHHHHHHhHHHHHHhhhhh-----------------hhhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q psy10418 254 DISALQKLRGQVDSLRDQMRLKEKEL-----------------GYRNSDVDNLKRQIDRLTSTVRELRRKQRLSQVQVRG 316 (389)
Q Consensus 254 d~~vm~kLKe~VdkQRdeiRak~~el-----------------~~k~~evEaLq~Q~~RL~~~n~eLRrk~~~~q~Q~r~ 316 (389)
.+....+.+..+.+|-.+|.++..+. ..-..+.++.+.++.......+++-.+++.++++...
T Consensus 1974 ~k~~v~~~~~~~~~~~~ei~~~k~~~e~dL~~A~Pa~Pkr~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~ 2053 (3245)
T 3vkg_A 1974 KQKDARELQVQLDVRNKEIAVQKVKAYADLEKAEPTGPLREEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYAT 2053 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555666666666655543332 2222333344444445555555555666666666666
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy10418 317 LIDERADFLAALQDHQRE 334 (389)
Q Consensus 317 l~eekadl~a~lq~~~~e 334 (389)
++.|+..+++.+...+.-
T Consensus 2054 ~~~ek~~L~~e~~~~~~k 2071 (3245)
T 3vkg_A 2054 LIRETEQIKTESSKVKNK 2071 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 666666666665544443
No 24
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=63.57 E-value=46 Score=30.64 Aligned_cols=66 Identities=14% Similarity=0.203 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHhh-HHHHhhhh
Q psy10418 286 VDNLKRQIDRLTSTVRELRRKQRLSQVQVRGLIDERADFLAALQ--------DHQREVAALKQQLG-LAEKENED 351 (389)
Q Consensus 286 vEaLq~Q~~RL~~~n~eLRrk~~~~q~Q~r~l~eekadl~a~lq--------~~~~ei~~L~~~lg-~~~k~~~d 351 (389)
+.+++.++.+|..-|..|.+...-+.+|+.-++..|.+++.+|= .+-.-|-.|+.+|- -|+...++
T Consensus 134 ~~~~~~~~~~L~~e~~~l~~~~~~l~~qlE~~v~~K~~~E~~L~~KF~~lLNeKK~KIR~lq~~Ll~~~~~~~~~ 208 (213)
T 1ik9_A 134 IAENQAKNEHLQKENERLLRDWNDVQGRFEKAVSAKEALETDLYKRFILVLNEKKTKIRSLHNKLLNAAQEREKD 208 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhh
Confidence 34677788888888888888888889999999999999888875 55566888886764 45544443
No 25
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=60.62 E-value=20 Score=26.45 Aligned_cols=36 Identities=25% Similarity=0.243 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy10418 81 EREVEEIEESWKEETQQLVEMVNRLQEENKKLSKRL 116 (389)
Q Consensus 81 ~~Ele~~Ed~~r~E~~eL~~~V~~LqeeN~~L~~~L 116 (389)
-.+|+.-...+..++..|...|..|+.++..|...|
T Consensus 24 ~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~l 59 (61)
T 1t2k_D 24 VQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQLL 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 446777777888899999999999999999987765
No 26
>2oa5_A Hypothetical protein BQLF2; MHR28B, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: PE5; 2.10A {Murid herpesvirus 4} SCOP: d.362.1.1 PDB: 2h3r_A*
Probab=60.07 E-value=9.5 Score=32.22 Aligned_cols=43 Identities=21% Similarity=0.385 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhcCCCCCccCCCCchHHHHHHH
Q psy10418 96 QQLVEMVNRLQEENKKLSKRLEHEGSSPMKSQQLSPEIDISVLQ 139 (389)
Q Consensus 96 ~eL~~~V~~LqeeN~~L~~~Ls~~~~~~~~~~~~~~e~er~vm~ 139 (389)
.+|...+++|+-||+.|...+.+.+... +....-+..++++|.
T Consensus 11 EeLaaeL~kLqmENK~LKkkl~~~g~~~-p~d~~LTp~qKea~I 53 (110)
T 2oa5_A 11 EEMVKEVERLKLENKTLKQKVKSSGAVS-SDDSILTAAKRESII 53 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHTC----------CCBCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCC-CCCccCCHHHHHHHH
Confidence 4688889999999999999997642221 222222345666553
No 27
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=58.76 E-value=48 Score=26.33 Aligned_cols=50 Identities=20% Similarity=0.339 Sum_probs=27.8
Q ss_pred hHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q psy10418 268 LRDQMRLKEKELGYRNSDVDNLKRQIDRLTSTVRELRRKQRLSQVQVRGLIDE 320 (389)
Q Consensus 268 QRdeiRak~~el~~k~~evEaLq~Q~~RL~~~n~eLRrk~~~~q~Q~r~l~ee 320 (389)
+++++-.|..++..+|.+ |..++..|..--.+.++++...++.++.+.+.
T Consensus 7 e~e~~~~klq~~E~rN~~---Le~~v~~le~~Le~s~~~q~~~~~Elk~l~e~ 56 (79)
T 3cvf_A 7 EREETQQKVQDLETRNAE---LEHQLRAMERSLEEARAERERARAEVGRAAQL 56 (79)
T ss_dssp ---CTTHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555 55566666666666666666666666555543
No 28
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=57.65 E-value=68 Score=36.12 Aligned_cols=40 Identities=3% Similarity=0.165 Sum_probs=22.6
Q ss_pred hHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHhhHHHHHHH
Q psy10418 268 LRDQMRLKEKELGYRNSDVDNLKRQIDRLTSTVRELRRKQ 307 (389)
Q Consensus 268 QRdeiRak~~el~~k~~evEaLq~Q~~RL~~~n~eLRrk~ 307 (389)
...++.+....+.....+++.+..+++++.+-..++-.++
T Consensus 975 ~~~e~~~~~~~v~~L~~e~~~l~~~~~~~~ke~~~lee~~ 1014 (1080)
T 2dfs_A 975 SEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWA 1014 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444445555555566666666666666666654444
No 29
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=57.21 E-value=10 Score=25.06 Aligned_cols=18 Identities=28% Similarity=0.599 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy10418 137 VLQKLRGQVDSLRDQMRL 154 (389)
Q Consensus 137 vm~kLKe~VdkQRDeiRa 154 (389)
|.++|++.+|+..|..-|
T Consensus 14 ivq~lq~r~drle~tvqa 31 (32)
T 2akf_A 14 IVQKLQERLDRLEETVQA 31 (32)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 556666666666665544
No 30
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=57.03 E-value=1.2e+02 Score=27.73 Aligned_cols=142 Identities=18% Similarity=0.165 Sum_probs=64.6
Q ss_pred CcccHH--HHHHHHHhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhhcCCCCCccCCCCchhhHHHHHHHHHHH
Q psy10418 188 PRFTTA--ELKEILHDRNTLKTRLNELEEERQCFKMVNRLQEENKKLSKRLEHEGSSPMKSQQLSPEIDISALQKLRGQV 265 (389)
Q Consensus 188 PrFTl~--ELreVL~ERNELKa~vf~LqEEl~~~~~V~qLqeeNk~L~~~ls~~~~~~~~~~e~~~~~d~~vm~kLKe~V 265 (389)
|.||-. |+.-.=..=++++..+..++.|+.-|+.=++ +--..|-..|.... + .-..=..-..+|+.=+
T Consensus 3 ~~f~s~~ee~~ywk~~~~~~~q~~~~le~El~EFqesSr--ELE~ELE~eL~~~E-----k---~~~~L~~~~~~L~~E~ 72 (189)
T 2v71_A 3 MDFSSLKEETAYWKELSMKYKQSFQEARDELVEFQEGSR--ELEAELEAQLVQAE-----Q---RNRDLQADNQRLKYEV 72 (189)
T ss_dssp -CCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH-----H---HHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH-----H---HHHHHHHHHHHHHHHH
Confidence 566654 3333333345677788888888888864222 22222323232221 0 0000112333444444
Q ss_pred HHhHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHhhHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10418 266 DSLRDQMRLKEKELGYRNSDVDNLKRQIDRLTSTVRELRRKQ-------RLSQVQVRGLIDERADFLAALQDHQREVAAL 338 (389)
Q Consensus 266 dkQRdeiRak~~el~~k~~evEaLq~Q~~RL~~~n~eLRrk~-------~~~q~Q~r~l~eekadl~a~lq~~~~ei~~L 338 (389)
+.-|+++.....+ -+..+.+||.++..|..++..|.-++ .-+..+.|..+.--.||+.-+-..=..++-|
T Consensus 73 e~~k~K~~~~~~e---~~~~~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~~R~~~~SleD~e~kln~aiEr~alL 149 (189)
T 2v71_A 73 EALKEKLEHQYAQ---SYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIMSLEDFEQRLNQAIERNAFL 149 (189)
T ss_dssp HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 4444444443333 12234555555555555554444443 3444555555555555555554444444444
Q ss_pred HHHh
Q psy10418 339 KQQL 342 (389)
Q Consensus 339 ~~~l 342 (389)
-.+|
T Consensus 150 E~El 153 (189)
T 2v71_A 150 ESEL 153 (189)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4444
No 31
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=55.95 E-value=23 Score=24.39 Aligned_cols=33 Identities=30% Similarity=0.480 Sum_probs=27.6
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHh
Q psy10418 195 LKEILHDRNTLKTRLNELEEERQCFKMVNRLQEENKKLS 233 (389)
Q Consensus 195 LreVL~ERNELKa~vf~LqEEl~~~~~V~qLqeeNk~L~ 233 (389)
|-++|+|-|.|...+-.-++|++.++ ++|..|.
T Consensus 2 L~~~L~ENekLhk~ie~KdeeIa~Lk------~eN~eL~ 34 (37)
T 1t6f_A 2 LYEALKENEKLHKEIEQKDNEIARLK------KENKELA 34 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH------HhhHHHH
Confidence 56899999999999999999887655 5888875
No 32
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=54.84 E-value=1e+02 Score=26.40 Aligned_cols=34 Identities=15% Similarity=0.180 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy10418 309 LSQVQVRGLIDERADFLAALQDHQREVAALKQQL 342 (389)
Q Consensus 309 ~~q~Q~r~l~eekadl~a~lq~~~~ei~~L~~~l 342 (389)
.+..++..+-.+..++...+......+..++..+
T Consensus 220 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (284)
T 1c1g_A 220 KYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSI 253 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444444444444
No 33
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=54.55 E-value=17 Score=28.50 Aligned_cols=42 Identities=19% Similarity=0.266 Sum_probs=28.9
Q ss_pred HHHHHHHHHHh-------HHHHHHhhhhhhhhhhhHHHHHHHHHHHHHh
Q psy10418 258 LQKLRGQVDSL-------RDQMRLKEKELGYRNSDVDNLKRQIDRLTST 299 (389)
Q Consensus 258 m~kLKe~VdkQ-------RdeiRak~~el~~k~~evEaLq~Q~~RL~~~ 299 (389)
+..|+..+.+- -..|+..+.+|..|..+|-.|+.++|+|..|
T Consensus 21 i~eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLDKfrSV 69 (72)
T 3nmd_A 21 LRDLQYALQEKIEELRQRDALIDELELELDQKDELIQMLQNELDKYRSV 69 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 45555555333 3346677778888888888899988888665
No 34
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=53.92 E-value=91 Score=31.47 Aligned_cols=82 Identities=11% Similarity=0.085 Sum_probs=50.6
Q ss_pred HHHHHHhHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHhhHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10418 262 RGQVDSLRDQMRLKEKELGYRNSDVDNLKRQIDRLTSTVRELRRK--------QRLSQVQVRGLIDERADFLAALQDHQR 333 (389)
Q Consensus 262 Ke~VdkQRdeiRak~~el~~k~~evEaLq~Q~~RL~~~n~eLRrk--------~~~~q~Q~r~l~eekadl~a~lq~~~~ 333 (389)
++.+.+|...+.-.-.+|...-.+|+++.+.+..|++.-.++-++ ...+-...+.+.++...+++.+.....
T Consensus 26 ~d~L~k~e~~V~~~l~~LE~~l~elsn~ts~v~~Lvk~iq~~~~~~Q~~~~d~~e~~tq~skkml~~~~~~e~~~~~~~~ 105 (409)
T 1m1j_C 26 ADFFNKYRLTTDGELLEIEGLLQQATNSTGSIEYLIQHIKTIYPSEKQTLPQSIEQLTQKSKKIIEEIIRYENTILAHEN 105 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSTTCCSSCHHHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred HHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCchhhHHHHHHHHHHHHHHHHHHhcchHH
Confidence 444555555555555555555556666666666677666665333 122333556778888888887777777
Q ss_pred HHHHHHHHhh
Q psy10418 334 EVAALKQQLG 343 (389)
Q Consensus 334 ei~~L~~~lg 343 (389)
.|..|+..+.
T Consensus 106 ~i~~l~~~~~ 115 (409)
T 1m1j_C 106 TIQQLTDMHI 115 (409)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7777776665
No 35
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=53.68 E-value=31 Score=25.78 Aligned_cols=37 Identities=16% Similarity=0.217 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q psy10418 81 EREVEEIEESWKEETQQLVEMVNRLQEENKKLSKRLE 117 (389)
Q Consensus 81 ~~Ele~~Ed~~r~E~~eL~~~V~~LqeeN~~L~~~Ls 117 (389)
..+++.-...+..++..|...|+.|+.|+..|...+.
T Consensus 25 ~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll~ 61 (63)
T 1ci6_A 25 QEALTGECKELEKKNEALKERADSLAKEIQYLKDLIE 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3466666777888999999999999999999877654
No 36
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=52.31 E-value=95 Score=27.49 Aligned_cols=103 Identities=20% Similarity=0.234 Sum_probs=45.1
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhhcCCCCCccCCCCchhhHHHHHHHHHHHHHhHHHHHH
Q psy10418 195 LKEILHDRNTLKTRLNELEEERQCFKMVNRLQEENKKLSKRLEHEGSSPMKSQQLSPEIDISALQKLRGQVDSLRDQMRL 274 (389)
Q Consensus 195 LreVL~ERNELKa~vf~LqEEl~~~~~V~qLqeeNk~L~~~ls~~~~~~~~~~e~~~~~d~~vm~kLKe~VdkQRdeiRa 274 (389)
|=+=|..||.+-+++..|.++...... .| .+|+. ..++..+..|+.-...-+.+|+-
T Consensus 30 l~~rL~~Rd~~E~~~~~l~~e~~~~~~------~~-----~vs~~------------~~~~~~I~~L~~El~~l~~ki~d 86 (152)
T 3a7p_A 30 LIRRLTDRNDKEAHLNELFQDNSGAIG------GN-----IVSHD------------DALLNTLAILQKELKSKEQEIRR 86 (152)
T ss_dssp ---------------------------------CH-----HHHHH------------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHhhccCCC------cc-----cccch------------hHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566788887777777666442211 11 01111 12456777777777777888888
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q psy10418 275 KEKELGYRNSDVDNLKRQIDRLTSTVRELRRKQRLSQVQVRGLIDE 320 (389)
Q Consensus 275 k~~el~~k~~evEaLq~Q~~RL~~~n~eLRrk~~~~q~Q~r~l~ee 320 (389)
...++..|+..++.++.-+.-|.--+.-+--|...++.--..||++
T Consensus 87 Leeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~R 132 (152)
T 3a7p_A 87 LKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQLVAR 132 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888777777766655555544444444444444444443
No 37
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=52.31 E-value=1e+02 Score=25.70 Aligned_cols=66 Identities=18% Similarity=0.363 Sum_probs=40.7
Q ss_pred HHHHHHhhhhhhhhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10418 269 RDQMRLKEKELGYRNSDVDNLKRQIDRLTSTVRELRRKQRLSQVQVRGLIDERADFLAALQDHQREVAA 337 (389)
Q Consensus 269 RdeiRak~~el~~k~~evEaLq~Q~~RL~~~n~eLRrk~~~~q~Q~r~l~eekadl~a~lq~~~~ei~~ 337 (389)
+.+|.-..+.+.....+++++..+..-|-...+|...++..--.+....+ ++++++|+....++..
T Consensus 35 k~Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e~~~~~~l~~~q~~i---~~lE~eL~~~r~e~~~ 100 (129)
T 3tnu_B 35 KHEISEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQRGELALKDARNKL---AELEEALQKAKQDMAR 100 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhHHHHHHHHHH
Confidence 44455555666677777888888888888888888877765444433333 3445555444444443
No 38
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=52.21 E-value=1.1e+02 Score=26.12 Aligned_cols=59 Identities=12% Similarity=0.170 Sum_probs=30.7
Q ss_pred hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy10418 285 DVDNLKRQIDRLTSTVRELRRKQRLSQVQVRGLIDERADFLAALQDHQREVAALKQQLG 343 (389)
Q Consensus 285 evEaLq~Q~~RL~~~n~eLRrk~~~~q~Q~r~l~eekadl~a~lq~~~~ei~~L~~~lg 343 (389)
.++.+..++..+..-...++.....+..++..+-.....+...+......+..++.+++
T Consensus 210 ~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (284)
T 1c1g_A 210 QAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYK 268 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444555555555555555555555555555555555555554443
No 39
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=51.95 E-value=90 Score=24.92 Aligned_cols=52 Identities=12% Similarity=0.250 Sum_probs=29.1
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10418 277 KELGYRNSDVDNLKRQIDRLTSTVRELRRKQRLSQVQVRGLIDERADFLAAL 328 (389)
Q Consensus 277 ~el~~k~~evEaLq~Q~~RL~~~n~eLRrk~~~~q~Q~r~l~eekadl~a~l 328 (389)
--+.....+|+.|.++...|..-|.++|.....+..+...|-++++.....+
T Consensus 20 dtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl 71 (81)
T 2jee_A 20 DTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERL 71 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444556666666666666666666655555555555555555544433
No 40
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=51.58 E-value=98 Score=25.47 Aligned_cols=58 Identities=14% Similarity=0.178 Sum_probs=33.1
Q ss_pred hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy10418 285 DVDNLKRQIDRLTSTVRELRRKQRLSQVQVRGLIDERADFLAALQDHQREVAALKQQL 342 (389)
Q Consensus 285 evEaLq~Q~~RL~~~n~eLRrk~~~~q~Q~r~l~eekadl~a~lq~~~~ei~~L~~~l 342 (389)
..+.+..++.+|..-+.+.--....++..+.--...|.+.+......++|+..|..-|
T Consensus 6 ~~e~lre~l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLTasL 63 (97)
T 2eqb_B 6 NYNQLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASL 63 (97)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555555555555555555555666666666666666655444
No 41
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=50.92 E-value=48 Score=24.23 Aligned_cols=41 Identities=32% Similarity=0.426 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCccCCCCchHHHHHHHHHHHHHHHH
Q psy10418 93 EETQQLVEMVNRLQEENKKLSKRLEHEGSSPMKSQQLSPEIDISVLQKLRGQVDSL 148 (389)
Q Consensus 93 ~E~~eL~~~V~~LqeeN~~L~~~Ls~~~~~~~~~~~~~~e~er~vm~kLKe~VdkQ 148 (389)
...++|..++..|-.-|.+|...|... |+=+.+|+++||+.
T Consensus 9 ~r~~~l~~~l~~L~~rN~rL~~~L~~A---------------R~el~~Lkeele~L 49 (51)
T 3m91_A 9 RDIHQLEARIDSLAARNSKLMETLKEA---------------RQQLLALREEVDRL 49 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHh
Confidence 345578888999999999998887643 56678888888875
No 42
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=49.34 E-value=1e+02 Score=24.89 Aligned_cols=48 Identities=21% Similarity=0.338 Sum_probs=29.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHhhHHH
Q psy10418 299 TVRELRRKQRLSQVQVRGLIDERADFLAALQ-------DHQREVAALKQQLGLAE 346 (389)
Q Consensus 299 ~n~eLRrk~~~~q~Q~r~l~eekadl~a~lq-------~~~~ei~~L~~~lg~~~ 346 (389)
-...|-||+..++..+-.+-+.=.+....|. +.+.++.+|.+++-+-+
T Consensus 45 Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee~ek~~~~aE~ev~~L~RriqllE 99 (101)
T 3u1c_A 45 DIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFAEENAAKAESEVASLNRRIQLVE 99 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3445666776666666665555555544444 44447888888876544
No 43
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=48.15 E-value=45 Score=24.80 Aligned_cols=36 Identities=19% Similarity=0.266 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q psy10418 82 REVEEIEESWKEETQQLVEMVNRLQEENKKLSKRLE 117 (389)
Q Consensus 82 ~Ele~~Ed~~r~E~~eL~~~V~~LqeeN~~L~~~Ls 117 (389)
.+|+.-.+.+..++..|...|..|+.+...|...|.
T Consensus 26 ~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~~l~ 61 (63)
T 2wt7_A 26 DTLQAETDQLEDEKSALQTEIANLLKEKEKLEFILA 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466666777888888888888888888888877664
No 44
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=47.29 E-value=1e+02 Score=24.31 Aligned_cols=41 Identities=17% Similarity=0.432 Sum_probs=19.5
Q ss_pred hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10418 285 DVDNLKRQIDRLTSTVRELRRKQRLSQVQVRGLIDERADFLAALQDHQ 332 (389)
Q Consensus 285 evEaLq~Q~~RL~~~n~eLRrk~~~~q~Q~r~l~eekadl~a~lq~~~ 332 (389)
++..+...+.+..+.-.+| ..+..+|++++.+|..++.+.+
T Consensus 22 el~~lke~l~k~e~~rkel-------e~~~~~l~~ek~~L~~ql~eaE 62 (89)
T 3bas_A 22 QMDKMKEDLAKTERIKKEL-------EEQNVTLLEQKNDLFGSMKQLE 62 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHhHH
Confidence 3444444444444444333 3335556666666655543333
No 45
>2l7b_A Apolipoprotein E, APO-E; lipid transport, atherosclerosis, alzheime disease; NMR {Homo sapiens}
Probab=45.71 E-value=2.1e+02 Score=27.50 Aligned_cols=40 Identities=25% Similarity=0.334 Sum_probs=27.1
Q ss_pred HHHHHHHhh-HHHHhhhhhhccccccCCCCCCCCCCCCCCC
Q psy10418 335 VAALKQQLG-LAEKENEDLYNSQETTSEEERPVQGPLPYEP 374 (389)
Q Consensus 335 i~~L~~~lg-~~~k~~~dl~~~~~~~~~~~~pvqgp~p~ep 374 (389)
+..||.+++ +++..+..+....-.+.-.-.|..||.|-+|
T Consensus 266 ~eeLr~~l~P~~e~lk~~l~~l~E~l~~sl~~~~~~~~~~~ 306 (307)
T 2l7b_A 266 QARLKSRFEPLAEDMQRQWAGQVEKVQAAEGTSAAPVPSDN 306 (307)
T ss_dssp HHHHHHHHTTCSCHHHHHHTTSSCCCSSSSCSSSCCCSCCC
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCC
Confidence 677888887 7777777777765334444456667887665
No 46
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=45.50 E-value=37 Score=25.86 Aligned_cols=33 Identities=24% Similarity=0.453 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy10418 82 REVEEIEESWKEETQQLVEMVNRLQEENKKLSK 114 (389)
Q Consensus 82 ~Ele~~Ed~~r~E~~eL~~~V~~LqeeN~~L~~ 114 (389)
+.|..+...+..|.+-++..|..||.||-.|..
T Consensus 30 QQLmkVN~~ls~Elr~mQ~~lq~LQsen~~Lr~ 62 (63)
T 2w6a_A 30 QQLMKVNSSLSDELRKLQREIHKLQAENLQLRQ 62 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHhHhhhHHHHHHHHHHHHHHhhhhhhcc
Confidence 456677888999999999999999999988863
No 47
>1j1d_B Troponin T, TNT; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.1 PDB: 1j1e_B
Probab=45.31 E-value=56 Score=27.19 Aligned_cols=43 Identities=19% Similarity=0.330 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy10418 301 RELRRKQRLSQVQVRGLIDERADFLAALQDHQREVAALKQQLG 343 (389)
Q Consensus 301 ~eLRrk~~~~q~Q~r~l~eekadl~a~lq~~~~ei~~L~~~lg 343 (389)
.+|+-+-+-+...+-.|-++|=||+..+..+..||..|+.++.
T Consensus 45 ~~L~e~~keLh~~I~~LEeEKYDlE~kv~kq~yEI~eL~~rV~ 87 (106)
T 1j1d_B 45 DQLREKAKELWQTIYNLEAEKFDLQEKFKQQKYEINVLRNRIN 87 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhHHHHHHHHHHH
Confidence 3566777777888888999999999999999999999999885
No 48
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=45.09 E-value=1.3e+02 Score=25.15 Aligned_cols=66 Identities=9% Similarity=0.167 Sum_probs=38.1
Q ss_pred HHHHHHhhhhhhhhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10418 269 RDQMRLKEKELGYRNSDVDNLKRQIDRLTSTVRELRRKQRLSQVQVRGLIDERADFLAALQDHQREVAA 337 (389)
Q Consensus 269 RdeiRak~~el~~k~~evEaLq~Q~~RL~~~n~eLRrk~~~~q~Q~r~l~eekadl~a~lq~~~~ei~~ 337 (389)
+.+|.-..+.+.....+++++..+..-|-...+|+..++..--.+....+ ++++++|+....++..
T Consensus 37 k~Ei~elrr~iq~L~~el~~l~~~~~sLE~~l~e~e~~~~~~l~~~q~~i---~~lE~eL~~~r~em~~ 102 (131)
T 3tnu_A 37 KSEISELRRTMQNLEIELQSQLSMKASLENSLEETKGRYCMQLAQIQEMI---GSVEEQLAQLRCEMEQ 102 (131)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Confidence 44555555566666677788888888888888888777765434333333 3455555544444443
No 49
>1ytz_T Troponin T; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.1 PDB: 1yv0_T 2w49_1 2w4u_1
Probab=44.59 E-value=55 Score=27.28 Aligned_cols=42 Identities=21% Similarity=0.328 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy10418 302 ELRRKQRLSQVQVRGLIDERADFLAALQDHQREVAALKQQLG 343 (389)
Q Consensus 302 eLRrk~~~~q~Q~r~l~eekadl~a~lq~~~~ei~~L~~~lg 343 (389)
+|+-+-+-+...+-.|-++|=||+..+..+..||..|+.++.
T Consensus 46 ~L~e~~keLh~~I~~lEeEKYDlE~kv~kq~yEI~eL~~rV~ 87 (107)
T 1ytz_T 46 KLRDKAKELWDWLYQLQTEKYDFAEQIKRKKYEIVTLRNRID 87 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHH
Confidence 566666777778888999999999999999999999999886
No 50
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=43.46 E-value=35 Score=24.96 Aligned_cols=28 Identities=32% Similarity=0.388 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q psy10418 90 SWKEETQQLVEMVNRLQEENKKLSKRLE 117 (389)
Q Consensus 90 ~~r~E~~eL~~~V~~LqeeN~~L~~~Ls 117 (389)
.++.|+.+|+..+..|..++..|...|.
T Consensus 23 aLk~E~~eLk~k~~~L~~~~~el~~~l~ 50 (53)
T 2yy0_A 23 LLRLELAEMKEKYEAIVEENKKLKAKLA 50 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455666777778888888777776654
No 51
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=43.33 E-value=1.3e+02 Score=24.16 Aligned_cols=34 Identities=32% Similarity=0.376 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHhh-hhhHHHHHHHHHHhhhhhhc
Q psy10418 206 KTRLNELEEERQCF-KMVNRLQEENKKLSKRLEHE 239 (389)
Q Consensus 206 Ka~vf~LqEEl~~~-~~V~qLqeeNk~L~~~ls~~ 239 (389)
|..+..|+.-++.| -.|..|...|+.|...+..-
T Consensus 8 Ke~mq~LNdRlAsyIdKVR~LEqqN~~Le~~i~~l 42 (93)
T 3s4r_A 8 KVELQELNDRFANLIDKVRFLEQQNKILLAELEQL 42 (93)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566788888755 78999999999998766543
No 52
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=41.50 E-value=30 Score=25.60 Aligned_cols=36 Identities=22% Similarity=0.345 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy10418 81 EREVEEIEESWKEETQQLVEMVNRLQEENKKLSKRL 116 (389)
Q Consensus 81 ~~Ele~~Ed~~r~E~~eL~~~V~~LqeeN~~L~~~L 116 (389)
-.+|+.-...+..++..|...|..|..++..|...|
T Consensus 24 ~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk~~l 59 (62)
T 1jnm_A 24 IARLEEKVKTLKAQNSELASTANMLREQVAQLKQKV 59 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346666667777888888888888888888776654
No 53
>2oa5_A Hypothetical protein BQLF2; MHR28B, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: PE5; 2.10A {Murid herpesvirus 4} SCOP: d.362.1.1 PDB: 2h3r_A*
Probab=40.87 E-value=1.2e+02 Score=25.63 Aligned_cols=19 Identities=37% Similarity=0.557 Sum_probs=13.5
Q ss_pred hhHHHHHHHHHHhhhhhhc
Q psy10418 221 MVNRLQEENKKLSKRLEHE 239 (389)
Q Consensus 221 ~V~qLqeeNk~L~~~ls~~ 239 (389)
.+.+|+.||+.|.+.+.+.
T Consensus 16 eL~kLqmENK~LKkkl~~~ 34 (110)
T 2oa5_A 16 EVERLKLENKTLKQKVKSS 34 (110)
T ss_dssp HHHHHHHHHHHHHHTC---
T ss_pred HHHHHHHHHHHHHHHHhcC
Confidence 4567778999999999753
No 54
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=40.69 E-value=97 Score=24.48 Aligned_cols=24 Identities=29% Similarity=0.266 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy10418 316 GLIDERADFLAALQDHQREVAALK 339 (389)
Q Consensus 316 ~l~eekadl~a~lq~~~~ei~~L~ 339 (389)
.+-=-|+||++.+.....||.-|+
T Consensus 60 ~a~l~r~dLE~kvesL~eEl~fLk 83 (86)
T 3swk_A 60 NASLARLDLERKVESLQEEIAFLK 83 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334456777777777777776655
No 55
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=40.48 E-value=1.7e+02 Score=26.17 Aligned_cols=66 Identities=18% Similarity=0.302 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCccCCCCchHHHHHHHHHHHHHHHHHHHHHH
Q psy10418 82 REVEEIEESWKEETQQLVEMVNRLQEENKKLSKRLEHEGSSPMKSQQLSPEIDISVLQKLRGQVDSLRDQMRL 154 (389)
Q Consensus 82 ~Ele~~Ed~~r~E~~eL~~~V~~LqeeN~~L~~~Ls~~~~~~~~~~~~~~e~er~vm~kLKe~VdkQRDeiRa 154 (389)
.+++.-...+..|.+.+.....++..+|++|+..++...-. .+-.+..++-+||-.-.+.--|.++
T Consensus 93 ~elq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lEKe-------~a~~eid~~~eLKalQ~~~eqE~~~ 158 (168)
T 3o0z_A 93 GDLQARITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEKE-------KNNLEIDLNYKLKSLQQRLEQEVNE 158 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 47777778888888888888888888888888888754211 1223667777888776666666554
No 56
>1j1d_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.2
Probab=39.46 E-value=69 Score=27.70 Aligned_cols=43 Identities=28% Similarity=0.308 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy10418 301 RELRRKQRLSQVQVRGLIDERADFLAALQDHQREVAALKQQLG 343 (389)
Q Consensus 301 ~eLRrk~~~~q~Q~r~l~eekadl~a~lq~~~~ei~~L~~~lg 343 (389)
.+|+.+-+-+...+-.+-++|=|++..+..+..||..|+.++.
T Consensus 61 ~~L~e~~keLh~~I~~LEeEKYDlE~kvkkq~yEI~dL~~rV~ 103 (133)
T 1j1d_C 61 AELQDLARQLHARVDKVDEERYDIEAKVTKNITEIADLTQKIF 103 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHcchHHHHHHHHHH
Confidence 3566666667777888899999999999999999999999986
No 57
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=39.45 E-value=1e+02 Score=27.58 Aligned_cols=21 Identities=10% Similarity=0.232 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy10418 310 SQVQVRGLIDERADFLAALQD 330 (389)
Q Consensus 310 ~q~Q~r~l~eekadl~a~lq~ 330 (389)
=+++++.++.+.+++.+++..
T Consensus 111 DeakI~aL~~Ei~~Lr~qL~~ 131 (175)
T 3lay_A 111 DTAKINAVAKEMESLGQKLDE 131 (175)
T ss_dssp CHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555554443
No 58
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=38.80 E-value=52 Score=26.46 Aligned_cols=36 Identities=28% Similarity=0.409 Sum_probs=29.4
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhh
Q psy10418 194 ELKEILHDRNTLKTRLNELEEERQCFKMVNRLQEENKKLSKR 235 (389)
Q Consensus 194 ELreVL~ERNELKa~vf~LqEEl~~~~~V~qLqeeNk~L~~~ 235 (389)
=|.+.|.|=..|...|..+++|+..++. +|..|..-
T Consensus 40 AL~eaL~EN~~Lh~~ie~l~eEi~~lk~------en~eL~el 75 (83)
T 1uii_A 40 ALYEALKENEKLHKEIEQKDNEIARLKK------ENKELAEV 75 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHH
Confidence 4788999999999999999999988775 66666543
No 59
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=38.25 E-value=3e+02 Score=27.02 Aligned_cols=53 Identities=19% Similarity=0.177 Sum_probs=29.2
Q ss_pred hHHHHHHHHHHHHHhHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHhhHHHHHH
Q psy10418 254 DISALQKLRGQVDSLRDQMRLKEKELGYRNSDVDNLKRQIDRLTSTVRELRRK 306 (389)
Q Consensus 254 d~~vm~kLKe~VdkQRdeiRak~~el~~k~~evEaLq~Q~~RL~~~n~eLRrk 306 (389)
++..+..+...+++++......+.+......|.+..+.+++.|..-|+-++.-
T Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 457 (487)
T 3oja_A 405 EQSPLQLLRAIVKRYEEMYVEQQSVQNNAIRDWDMYQHKETQLAEENARLKKL 457 (487)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCcHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhhhhHHHHHHHHhhhhhhh
Confidence 34555556666666665555555555555555555555555555544444433
No 60
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=38.05 E-value=69 Score=25.71 Aligned_cols=42 Identities=17% Similarity=0.169 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCC
Q psy10418 81 EREVEEIEESWKEETQQLVEMVNRLQEENKKLSKRLEHEGSS 122 (389)
Q Consensus 81 ~~Ele~~Ed~~r~E~~eL~~~V~~LqeeN~~L~~~Ls~~~~~ 122 (389)
..+++.-...+..|+..|...|..|..++..|...+....++
T Consensus 38 ~~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~~~p~~ 79 (87)
T 1hjb_A 38 NLETQHKVLELTAENERLQKKVEQLSRELSTLRNLFKQLPEP 79 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcHH
Confidence 446666777789999999999999999999999988865543
No 61
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=37.94 E-value=2.2e+02 Score=25.48 Aligned_cols=78 Identities=9% Similarity=-0.011 Sum_probs=49.7
Q ss_pred hhhHHHHHHHHHHHHHhHHHHHHhhhhh-hhhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10418 252 EIDISALQKLRGQVDSLRDQMRLKEKEL-GYRNSDVDNLKRQIDRLTSTVRELRRKQRLSQVQVRGLIDERADFLAALQD 330 (389)
Q Consensus 252 ~~d~~vm~kLKe~VdkQRdeiRak~~el-~~k~~evEaLq~Q~~RL~~~n~eLRrk~~~~q~Q~r~l~eekadl~a~lq~ 330 (389)
....+++.+|++++++--+..++..++- ......++ .-|.+...+|.+=...++..+.+|.+++..+++.+..
T Consensus 8 ~~~~~~l~~Lq~~i~~l~~~~~~~~~e~l~~~q~~lq------~sl~~~~~~l~~g~~~L~~~~~~Le~~~~~L~~~i~~ 81 (174)
T 2p22_A 8 TNHHEMLQNLQTVVNELYREDVDYVADKILTRQTVMQ------ESIARFHEIIAIDKNHLRAVEQAIEQTMHSLNAQIDV 81 (174)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTGGGGTTHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467999999999999988888665543 22222221 2234566666666666777677776666666665554
Q ss_pred HHHHH
Q psy10418 331 HQREV 335 (389)
Q Consensus 331 ~~~ei 335 (389)
....+
T Consensus 82 l~~~~ 86 (174)
T 2p22_A 82 LTANR 86 (174)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44433
No 62
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=35.82 E-value=84 Score=24.69 Aligned_cols=38 Identities=18% Similarity=0.219 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q psy10418 81 EREVEEIEESWKEETQQLVEMVNRLQEENKKLSKRLEH 118 (389)
Q Consensus 81 ~~Ele~~Ed~~r~E~~eL~~~V~~LqeeN~~L~~~Ls~ 118 (389)
..+++.-...+..|+..|...|..|..++..|...+..
T Consensus 38 ~~e~~~r~~~L~~eN~~L~~~v~~L~~E~~~Lr~ll~q 75 (78)
T 1gu4_A 38 NLETQHKVLELTAENERLQKKVEQLSRELSTLRNLFKQ 75 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44667777788899999999999999999999877653
No 63
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=35.67 E-value=42 Score=26.75 Aligned_cols=39 Identities=28% Similarity=0.455 Sum_probs=31.2
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhh
Q psy10418 194 ELKEILHDRNTLKTRLNELEEERQCFKMVNRLQEENKKLSKRLEH 238 (389)
Q Consensus 194 ELreVL~ERNELKa~vf~LqEEl~~~~~V~qLqeeNk~L~~~ls~ 238 (389)
=|.+.|.|-..|...|-.+++|+..++ ++|..|..-+.+
T Consensus 28 AL~eaL~EN~~Lh~~ie~~~eEi~~Lk------eEN~~L~el~~~ 66 (79)
T 2zxx_A 28 ALYEALKENEKLHKEIEQKDSEIARLR------KENKDLAEVAEH 66 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHH
Confidence 478899999999999999999997665 477777654444
No 64
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=35.59 E-value=1.7e+02 Score=23.41 Aligned_cols=50 Identities=22% Similarity=0.308 Sum_probs=31.5
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHhhHHH
Q psy10418 297 TSTVRELRRKQRLSQVQVRGLIDERADFLAAL-------QDHQREVAALKQQLGLAE 346 (389)
Q Consensus 297 ~~~n~eLRrk~~~~q~Q~r~l~eekadl~a~l-------q~~~~ei~~L~~~lg~~~ 346 (389)
-.-...|.||+..++.++-.+-+.-.+....| ...+.++.+|..++-+.+
T Consensus 43 E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~ek~~~~AE~evasLnRriqllE 99 (101)
T 3u59_A 43 EEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQAEKKATDAEAEVASLNRRIQLVE 99 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 33444577777777777766665555555444 445557888888876544
No 65
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=35.01 E-value=1.7e+02 Score=23.33 Aligned_cols=54 Identities=28% Similarity=0.313 Sum_probs=38.1
Q ss_pred hhHHHhhhhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q psy10418 63 TKLQELGDHISKLEHEKLEREVEEIEESWKEETQQLVEMVNRLQEENKKLSKRLEH 118 (389)
Q Consensus 63 ~~~e~L~~~~~qle~Ek~~~Ele~~Ed~~r~E~~eL~~~V~~LqeeN~~L~~~Ls~ 118 (389)
.++-.|+..++-|+.|+++.|.. ..+-..|+-.|+.++..=..+.++|+..+.+
T Consensus 26 qEi~~Lr~kv~elEnErlQyEkK--LKsTK~El~~Lq~qLe~kd~ei~rL~~~l~~ 79 (81)
T 3qh9_A 26 QELRHLKIKVEELENERNQYEWK--LKATKAEVAQLQEQVALKDAEIERLHSQLSR 79 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HhhhHHHHHHHHHHHHhhHHHHHHHHHHHhh
Confidence 56777887777777777754433 2233467778888888888888888887764
No 66
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=34.91 E-value=1.2e+02 Score=22.09 Aligned_cols=34 Identities=12% Similarity=0.397 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy10418 309 LSQVQVRGLIDERADFLAALQDHQREVAALKQQL 342 (389)
Q Consensus 309 ~~q~Q~r~l~eekadl~a~lq~~~~ei~~L~~~l 342 (389)
-++.|+.+|-.+=..|.+.|++.-.+|..|+.+|
T Consensus 13 ~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeel 46 (51)
T 3m91_A 13 QLEARIDSLAARNSKLMETLKEARQQLLALREEV 46 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444445555555555555555554
No 67
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=34.87 E-value=1.1e+02 Score=26.58 Aligned_cols=82 Identities=17% Similarity=0.236 Sum_probs=51.2
Q ss_pred HHHHHHHHHHhHHHHHHhhhhhhhhhhhHHHHHHHH-HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10418 258 LQKLRGQVDSLRDQMRLKEKELGYRNSDVDNLKRQI-DRLTSTVRELRRKQRLSQVQVRGLIDERADFLAALQDHQREVA 336 (389)
Q Consensus 258 m~kLKe~VdkQRdeiRak~~el~~k~~evEaLq~Q~-~RL~~~n~eLRrk~~~~q~Q~r~l~eekadl~a~lq~~~~ei~ 336 (389)
+.+|...+..-+..=..-+.+....+.++|.|.-.+ +-..+|+++=|+....++.....|-++-.|-.+-|...+..+.
T Consensus 48 ~~~L~~~l~eE~~~R~~aE~~~~~ie~ElE~LTasLFeEAN~MVa~ar~~~~~~e~r~~~L~~ql~e~e~ll~~lq~QL~ 127 (135)
T 2e7s_A 48 VKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNLVADARMEKYAIEILNKRLTEQLREKDMLLDTLTLQLK 127 (135)
T ss_dssp HHTHHHHHHHTTSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHTTTHHHHCC--------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555556667777788888887765 5667888888888888888888777777776666666666666
Q ss_pred HHH
Q psy10418 337 ALK 339 (389)
Q Consensus 337 ~L~ 339 (389)
.|+
T Consensus 128 ~LK 130 (135)
T 2e7s_A 128 NLK 130 (135)
T ss_dssp ---
T ss_pred HHH
Confidence 655
No 68
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=34.06 E-value=2e+02 Score=23.72 Aligned_cols=56 Identities=27% Similarity=0.309 Sum_probs=0.0
Q ss_pred chhHHHhhhhhhHHHHhHH--HHHHHHHHHHHHH------------------------HHHHHHHHHHHHHHHHHHHhhh
Q psy10418 62 NTKLQELGDHISKLEHEKL--EREVEEIEESWKE------------------------ETQQLVEMVNRLQEENKKLSKR 115 (389)
Q Consensus 62 ~~~~e~L~~~~~qle~Ek~--~~Ele~~Ed~~r~------------------------E~~eL~~~V~~LqeeN~~L~~~ 115 (389)
+.++..|+..++.|++|.. +++.+.+|-.+.. ..+.....+..|+.|+.+|...
T Consensus 11 ~e~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~~~l~Gd~~~~~TKVlH~~~NPa~~a~~~~~~~~e~Lq~E~erLr~~ 90 (100)
T 1go4_E 11 REEADTLRLKVEELEGERSRLEEEKRMLEAQLERRALQGDYDQSRTKVLHMSLNPTSVARQRLREDHSQLQAECERLRGL 90 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSCCCTTTEEEEEESSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccCeeeeecCChHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hh
Q psy10418 116 LE 117 (389)
Q Consensus 116 Ls 117 (389)
+.
T Consensus 91 v~ 92 (100)
T 1go4_E 91 LR 92 (100)
T ss_dssp HT
T ss_pred HH
No 69
>3uun_A Dystrophin; triple helical, cell structure and stability, cytoskeletal, structural protein; 2.30A {Homo sapiens}
Probab=33.93 E-value=1.6e+02 Score=22.56 Aligned_cols=37 Identities=16% Similarity=0.044 Sum_probs=26.9
Q ss_pred HHHHHhHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHh
Q psy10418 263 GQVDSLRDQMRLKEKELGYRNSDVDNLKRQIDRLTST 299 (389)
Q Consensus 263 e~VdkQRdeiRak~~el~~k~~evEaLq~Q~~RL~~~ 299 (389)
+.|..|-.+.++-..+|......|+++...-..|+..
T Consensus 36 ~~v~~~l~~h~~l~~ei~~~~~~v~~~~~~g~~L~~~ 72 (119)
T 3uun_A 36 EVVKDQFHTHEGYMMDLTAHQGRVGNILQLGSKLIGT 72 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHc
Confidence 4556666677777777777777788888877777654
No 70
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=33.57 E-value=1.9e+02 Score=30.02 Aligned_cols=92 Identities=14% Similarity=0.204 Sum_probs=58.0
Q ss_pred CCchhhHHHH----HHHHHHHHHhHHHHHHhhhhhhhhhhhHHHHHHHH----------------------HHHHHhhHH
Q psy10418 249 LSPEIDISAL----QKLRGQVDSLRDQMRLKEKELGYRNSDVDNLKRQI----------------------DRLTSTVRE 302 (389)
Q Consensus 249 ~~~~~d~~vm----~kLKe~VdkQRdeiRak~~el~~k~~evEaLq~Q~----------------------~RL~~~n~e 302 (389)
+|+..|+=++ .+|+.++++|...++-.-.+|...-.+.......+ .++..++.+
T Consensus 36 gCaDeDwGvkCPSGCrLqglL~kqerdv~~rI~kLkn~L~~~s~s~~~s~~y~~~~~~~lk~~~~q~~dndn~~~e~S~e 115 (491)
T 1m1j_A 36 ICVDDDWGTKCPSGCRMQGIIDDTDQNYSQRIDNIRQQLADSQNKYKTSNRVIVETINILKPGLEGAQQLDENYGHVSTE 115 (491)
T ss_dssp BCCTTSTTTEECCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCccccccCCCCCccchhhHHHHhhhhHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhhhccchhHHHHHHHH
Confidence 4444444443 35688888888877777776666555543322222 234456679
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10418 303 LRRKQRLSQVQVRGLIDERADFLAALQDHQREVAALKQ 340 (389)
Q Consensus 303 LRrk~~~~q~Q~r~l~eekadl~a~lq~~~~ei~~L~~ 340 (389)
||+++..++--+.+=|..=.=|+.-|.++--+|..|--
T Consensus 116 Le~ri~yIK~kVd~qi~~IrvLq~~l~~q~skIQRLE~ 153 (491)
T 1m1j_A 116 LRRRIVTLKQRVATQVNRIKALQNSIQEQVVEMKRLEV 153 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999888877777665555666666666666766643
No 71
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=32.97 E-value=78 Score=23.56 Aligned_cols=33 Identities=12% Similarity=0.204 Sum_probs=23.0
Q ss_pred hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q psy10418 285 DVDNLKRQIDRLTSTVRELRRKQRLSQVQVRGL 317 (389)
Q Consensus 285 evEaLq~Q~~RL~~~n~eLRrk~~~~q~Q~r~l 317 (389)
.++.|..+++-|..-|.+|+.++..++..+..|
T Consensus 24 ~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~L 56 (63)
T 1ci6_A 24 EQEALTGECKELEKKNEALKERADSLAKEIQYL 56 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466777777777777777777777766665444
No 72
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=31.72 E-value=1.6e+02 Score=22.05 Aligned_cols=62 Identities=18% Similarity=0.262 Sum_probs=34.3
Q ss_pred HHHHhhhhhhhhhh-hHHHHH-HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10418 271 QMRLKEKELGYRNS-DVDNLK-RQIDRLTSTVRELRRKQRLSQVQVRGLIDERADFLAALQDHQREVAALK 339 (389)
Q Consensus 271 eiRak~~el~~k~~-evEaLq-~Q~~RL~~~n~eLRrk~~~~q~Q~r~l~eekadl~a~lq~~~~ei~~L~ 339 (389)
+|||.=-++..+|. |+|+.= .+++ +|..-...--..+++.-.+=+++...+|..+-||.+++
T Consensus 13 eiRaQYE~ia~knr~EaE~~y~~k~e-------el~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~slk 76 (77)
T 3trt_A 13 DVRQQYESVAAKNLQEAEEWYKSKFA-------DLSEAANRNNDALRQAKQESTEYRRQVQSLTMEVDALK 76 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHH-------HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 56666666666666 566643 3322 22222222333455555666677777777777776665
No 73
>1j1e_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 3.30A {Homo sapiens} SCOP: h.1.25.2
Probab=30.87 E-value=1e+02 Score=27.90 Aligned_cols=43 Identities=28% Similarity=0.308 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy10418 301 RELRRKQRLSQVQVRGLIDERADFLAALQDHQREVAALKQQLG 343 (389)
Q Consensus 301 ~eLRrk~~~~q~Q~r~l~eekadl~a~lq~~~~ei~~L~~~lg 343 (389)
.+|+.+..-+...+-.|-++|=||+..+..+..||..|+.++.
T Consensus 61 ~~L~e~ckELh~~I~~LEeEKYDlE~kvkkqdyEI~dL~~rV~ 103 (180)
T 1j1e_C 61 AELQDLARQLHARVDKVDEERYDIEAKVTKNITEIADLTQKIF 103 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchhHHHHHHHHH
Confidence 3566666777778888999999999999999999999999985
No 74
>3uul_A Utrophin; spectrin repeat, structural protein, cytoskeletal, helical bundle; 1.95A {Rattus norvegicus} PDB: 3uum_A
Probab=30.61 E-value=1.8e+02 Score=22.28 Aligned_cols=37 Identities=16% Similarity=0.088 Sum_probs=25.8
Q ss_pred HHHHHhHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHh
Q psy10418 263 GQVDSLRDQMRLKEKELGYRNSDVDNLKRQIDRLTST 299 (389)
Q Consensus 263 e~VdkQRdeiRak~~el~~k~~evEaLq~Q~~RL~~~ 299 (389)
+.|..|-.+.++-..+|......|+++...-..|+..
T Consensus 36 ~~v~~~l~~h~~l~~ei~~~~~~v~~v~~~g~~L~~~ 72 (118)
T 3uul_A 36 EDVKEQFATHETFMMELSAHQSSVGSVLQAGNQLMTQ 72 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445556666777777777777777777777777654
No 75
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=30.60 E-value=1.9e+02 Score=22.48 Aligned_cols=31 Identities=13% Similarity=0.320 Sum_probs=15.9
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q psy10418 289 LKRQIDRLTSTVRELRRKQRLSQVQVRGLID 319 (389)
Q Consensus 289 Lq~Q~~RL~~~n~eLRrk~~~~q~Q~r~l~e 319 (389)
|..++..|..--.+.++++...++.++.+.+
T Consensus 19 Le~~v~~le~~Le~s~~~q~~~~~Elk~~~e 49 (72)
T 3cve_A 19 LEGQLSEMEQRLEKSQSEQDAFRSNLKTLLE 49 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555555555555444
No 76
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=30.58 E-value=2e+02 Score=22.72 Aligned_cols=20 Identities=20% Similarity=0.356 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHhhHHHHH
Q psy10418 286 VDNLKRQIDRLTSTVRELRR 305 (389)
Q Consensus 286 vEaLq~Q~~RL~~~n~eLRr 305 (389)
++.|+..+.+|...+.++.+
T Consensus 29 l~~Lq~Ev~~LRGqiE~~~~ 48 (83)
T 2xdj_A 29 LSDNQSDIDSLRGQIQENQY 48 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHH
Confidence 33344444444333333333
No 77
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=30.54 E-value=1.6e+02 Score=23.57 Aligned_cols=49 Identities=18% Similarity=0.184 Sum_probs=33.0
Q ss_pred HHHHHhHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHhhHHHHHHHHHHH
Q psy10418 263 GQVDSLRDQMRLKEKELGYRNSDVDNLKRQIDRLTSTVRELRRKQRLSQ 311 (389)
Q Consensus 263 e~VdkQRdeiRak~~el~~k~~evEaLq~Q~~RL~~~n~eLRrk~~~~q 311 (389)
.+..+.|..|-.-=.|-...-..|++|++.+..|.+.|.+||--...+|
T Consensus 32 ~lAE~RR~AL~eaL~EN~~Lh~~ie~l~eEi~~lk~en~eL~elae~~q 80 (83)
T 1uii_A 32 EVAEKRRKALYEALKENEKLHKEIEQKDNEIARLKKENKELAEVAEHVQ 80 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555444444445556789999999999999999887655544
No 78
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=30.39 E-value=2.7e+02 Score=24.76 Aligned_cols=74 Identities=12% Similarity=0.110 Sum_probs=45.3
Q ss_pred HHHHhHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy10418 264 QVDSLRDQMRLKEKELGYRNSDVDNLKRQIDRLTSTVRELRRKQRLSQVQVRGLIDERADFLAALQDHQREVAALKQQLG 343 (389)
Q Consensus 264 ~VdkQRdeiRak~~el~~k~~evEaLq~Q~~RL~~~n~eLRrk~~~~q~Q~r~l~eekadl~a~lq~~~~ei~~L~~~lg 343 (389)
..+.|+.+|++...+..... .+||......+.++++|+---.==++++....++|..|+.++.
T Consensus 68 LT~EQq~ql~~I~~e~r~~~-----------------~~Lr~ql~akr~EL~aL~~a~~~DeakI~aL~~Ei~~Lr~qL~ 130 (175)
T 3lay_A 68 LTTEQQATAQKIYDDYYTQT-----------------SALRQQLISKRYEYNALLTASSPDTAKINAVAKEMESLGQKLD 130 (175)
T ss_dssp CCHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 44666666666555544332 2345566666777777775443335778888888888888876
Q ss_pred -HHHHhhhhhhc
Q psy10418 344 -LAEKENEDLYN 354 (389)
Q Consensus 344 -~~~k~~~dl~~ 354 (389)
.+-+-+-.+.+
T Consensus 131 ~~R~k~~~em~K 142 (175)
T 3lay_A 131 EQRVKRDVAMAQ 142 (175)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 44444444443
No 79
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=30.25 E-value=97 Score=24.52 Aligned_cols=30 Identities=33% Similarity=0.372 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhc
Q psy10418 90 SWKEETQQLVEMVNRLQEENKKLSKRLEHE 119 (389)
Q Consensus 90 ~~r~E~~eL~~~V~~LqeeN~~L~~~Ls~~ 119 (389)
.++..+.+|..++.+|+.||.-|....+..
T Consensus 19 vLKe~I~EL~e~~~qLE~EN~~Lk~~aspE 48 (78)
T 1dip_A 19 ILKEQIRELVEKNSQLERENTLLKTLASPE 48 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCHH
Confidence 456677889999999999999998877643
No 80
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=29.52 E-value=1.7e+02 Score=24.39 Aligned_cols=48 Identities=13% Similarity=0.180 Sum_probs=27.1
Q ss_pred HHHHHHHhHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q psy10418 261 LRGQVDSLRDQMRLKEKELGYRNSDVDNLKRQIDRLTSTVRELRRKQRLSQVQVR 315 (389)
Q Consensus 261 LKe~VdkQRdeiRak~~el~~k~~evEaLq~Q~~RL~~~n~eLRrk~~~~q~Q~r 315 (389)
||+++..+-+.+---.+++..|+.+ ++|+.+....|.+....++.|++
T Consensus 35 LKD~LEe~eE~~aql~Re~~eK~re-------~e~~Kr~~~~L~~~~~~lk~~L~ 82 (103)
T 4h22_A 35 LKDMLLELEEQLAESRRQYEEKNKE-------FEREKHAHSILQFQFAEVKEALK 82 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555555555555 55556666666666666666654
No 81
>4dyl_A Tyrosine-protein kinase FES/FPS; structural genomics, structural genomics consortium, BCR, CR associated substrate, transferase; 2.18A {Homo sapiens}
Probab=29.44 E-value=3e+02 Score=26.97 Aligned_cols=70 Identities=14% Similarity=0.172 Sum_probs=49.2
Q ss_pred HHHHHHHHHhHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10418 259 QKLRGQVDSLRDQMRLKEKELGYRNSDVDNLKRQIDRLTSTVRELRRKQRLSQVQVRGLIDERADFLAALQD 330 (389)
Q Consensus 259 ~kLKe~VdkQRdeiRak~~el~~k~~evEaLq~Q~~RL~~~n~eLRrk~~~~q~Q~r~l~eekadl~a~lq~ 330 (389)
.-|+..+.+-..+|..-.+++..|..+|+.|...+++-. -+.+-+..+.++ .+.-++.+.+..++...+.
T Consensus 305 ~~lq~~L~~~~~~l~~~~~~~~~k~~~v~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~e~~~~~~~~~~~ 374 (406)
T 4dyl_A 305 ESVQHTLTSVTDELAVATEMVFRRQEMVTQLQQELRNEE-ENTHPRERVQLL-GKRQVLQEALQGLQVALCS 374 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHSCTTCGGGGH-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hcCCcchHHHHH-hHHhhHHHHHHHHHHHHhH
Confidence 367888888889999999999999999999998887763 233434444444 3666666666666555443
No 82
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=29.38 E-value=1.9e+02 Score=23.17 Aligned_cols=50 Identities=16% Similarity=0.428 Sum_probs=32.8
Q ss_pred hHHHHHHHHHHHHHhHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHhhHHHHHH
Q psy10418 254 DISALQKLRGQVDSLRDQMRLKEKELGYRNSDVDNLKRQIDRLTSTVRELRRK 306 (389)
Q Consensus 254 d~~vm~kLKe~VdkQRdeiRak~~el~~k~~evEaLq~Q~~RL~~~n~eLRrk 306 (389)
+.-+-++-++.+.+.|..| ..+|..-..+|+.|+.+++|..+-..+|-+.
T Consensus 31 e~YfrqkekEqL~~LKkkl---~~el~~h~~ei~~le~~i~rhk~~i~~l~~~ 80 (84)
T 1gmj_A 31 ERYFRARAKEQLAALKKHK---ENEISHHAKEIERLQKEIERHKQSIKKLKQS 80 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 3334444455554444433 4567777778999999999998888777553
No 83
>2fup_A Hypothetical protein PA3352; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.48A {Pseudomonas aeruginosa} SCOP: a.47.5.1
Probab=28.95 E-value=2.1e+02 Score=23.66 Aligned_cols=123 Identities=18% Similarity=0.151 Sum_probs=49.7
Q ss_pred hhhHHHHHHHHHHHHHhHHHHHHhhh-hhhhhhhhHHHHHHHHHHHHHhhHHHHHHHHHH--HHHHHHHHHHHHHHHHHH
Q psy10418 252 EIDISALQKLRGQVDSLRDQMRLKEK-ELGYRNSDVDNLKRQIDRLTSTVRELRRKQRLS--QVQVRGLIDERADFLAAL 328 (389)
Q Consensus 252 ~~d~~vm~kLKe~VdkQRdeiRak~~-el~~k~~evEaLq~Q~~RL~~~n~eLRrk~~~~--q~Q~r~l~eekadl~a~l 328 (389)
..+...+..|..+..++++-|.+.+. .|.....+...+-.++.++-..-..+-..+.+- ..-+..++.. +.-...+
T Consensus 13 ~~~~~~l~~L~~lL~~E~~~L~~~d~~~L~~i~~~k~~ll~~L~~~~~~R~~~l~~lg~~~~~~~~~~l~~~-~~~~~~l 91 (157)
T 2fup_A 13 AEDIGHANQLLQLVDEEFQALERRELPVLQQLLGAKQPLMQQLERNGRARAEILREAGVSLDREGLARYARE-RADGAEL 91 (157)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSHHHHHHHHTT-CTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCChHHHHHHHhc-cccchHH
Confidence 35778899999999999999988774 333333333444443333332211111111000 1123333332 2222333
Q ss_pred HHHHHHHHHHHHHhhHHHHhhhhhhccc-----cccC--CCCCCCCCCCCCCCCCCC
Q psy10418 329 QDHQREVAALKQQLGLAEKENEDLYNSQ-----ETTS--EEERPVQGPLPYEPDDAP 378 (389)
Q Consensus 329 q~~~~ei~~L~~~lg~~~k~~~dl~~~~-----~~~~--~~~~pvqgp~p~ep~~~p 378 (389)
...-..+..+=.++--.-..|+.+.+.. +++. -+. + +|.-|-|+...
T Consensus 92 ~~~~~~l~~l~~~~~~~N~~Ng~Li~~~l~~~~~~L~~L~~~-~--~~~~Y~~~G~~ 145 (157)
T 2fup_A 92 LARGDELGELLERCQQANLRNGRIIRANQASTGSLLNILRGQ-D--APSLYDSRGGT 145 (157)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC--CTTHHHHHHHHHHC-----------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-C--CccCcCCCCCc
Confidence 3344444444444444444577776654 1111 121 1 56778888743
No 84
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=28.66 E-value=1e+02 Score=22.46 Aligned_cols=33 Identities=24% Similarity=0.299 Sum_probs=23.7
Q ss_pred hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q psy10418 285 DVDNLKRQIDRLTSTVRELRRKQRLSQVQVRGL 317 (389)
Q Consensus 285 evEaLq~Q~~RL~~~n~eLRrk~~~~q~Q~r~l 317 (389)
-++.|+..++-|..-|.+|+..+..++.++..|
T Consensus 23 ~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~L 55 (61)
T 1t2k_D 23 WVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQL 55 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367777777777777877777777766666554
No 85
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=28.39 E-value=72 Score=25.65 Aligned_cols=39 Identities=28% Similarity=0.433 Sum_probs=31.3
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhh
Q psy10418 194 ELKEILHDRNTLKTRLNELEEERQCFKMVNRLQEENKKLSKRLEH 238 (389)
Q Consensus 194 ELreVL~ERNELKa~vf~LqEEl~~~~~V~qLqeeNk~L~~~ls~ 238 (389)
-|.+.|.|=+.|...+..+++|+..++. +|..|..--++
T Consensus 32 AL~eaL~EN~~Lh~~ie~~~eEi~~Lk~------en~~L~elA~~ 70 (83)
T 1wlq_A 32 ALYEALKENEKLHKEIEQKDSEIARLRK------ENKDLAEVAEH 70 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHH
Confidence 5789999999999999999999877764 77777654443
No 86
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=28.35 E-value=89 Score=22.75 Aligned_cols=28 Identities=14% Similarity=0.255 Sum_probs=15.1
Q ss_pred hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q psy10418 284 SDVDNLKRQIDRLTSTVRELRRKQRLSQVQVRGLI 318 (389)
Q Consensus 284 ~evEaLq~Q~~RL~~~n~eLRrk~~~~q~Q~r~l~ 318 (389)
.|+|||+.. |.+|+.|+..+..+...++
T Consensus 19 ~d~eaLk~E-------~~eLk~k~~~L~~~~~el~ 46 (53)
T 2yy0_A 19 PEIELLRLE-------LAEMKEKYEAIVEENKKLK 46 (53)
T ss_dssp HHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHH-------HHHHHHHHHHHHHHHHHHH
Confidence 466666554 4455555555555554444
No 87
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=27.84 E-value=2.7e+02 Score=23.38 Aligned_cols=62 Identities=18% Similarity=0.187 Sum_probs=24.5
Q ss_pred hhhhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy10418 279 LGYRNSDVDNLKRQIDRLTSTVRELRRKQRLSQVQVRGLIDERADFLAALQDHQREVAALKQQLG 343 (389)
Q Consensus 279 l~~k~~evEaLq~Q~~RL~~~n~eLRrk~~~~q~Q~r~l~eekadl~a~lq~~~~ei~~L~~~lg 343 (389)
|.....+|+.|...+++|+ .|-++-+.-+..|+-.|=-+-++-....|..--+...|++++.
T Consensus 17 Ie~Lkreie~lk~ele~l~---~E~q~~v~ql~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~e~~ 78 (120)
T 3i00_A 17 IERLYREISGLKAQLENMK---TESQRVVLQLKGHVSELEADLAEQQHLRQQAADDCEFLRAELD 78 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444555444442 2444444444444433222212111122222224555666665
No 88
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=27.66 E-value=1.4e+02 Score=23.22 Aligned_cols=59 Identities=22% Similarity=0.216 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhh-HHHHhhhhhhccccccCCCCCC
Q psy10418 307 QRLSQVQVRGLIDERA--DFLAALQDHQREVAALKQQLG-LAEKENEDLYNSQETTSEEERP 365 (389)
Q Consensus 307 ~~~~q~Q~r~l~eeka--dl~a~lq~~~~ei~~L~~~lg-~~~k~~~dl~~~~~~~~~~~~p 365 (389)
.++..-.+|-+..+++ +|-..+-.++++|..|+.++. |+++..+--...-+..++..+|
T Consensus 14 ~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~~~~~~~~~~~~e~~P 75 (78)
T 3efg_A 14 ARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVRSTLFADAADEPPP 75 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-----------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCc
No 89
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=26.40 E-value=1.2e+02 Score=23.81 Aligned_cols=26 Identities=15% Similarity=0.257 Sum_probs=10.3
Q ss_pred hhHHHHHHHHHHHHHhhHHHHHHHHH
Q psy10418 284 SDVDNLKRQIDRLTSTVRELRRKQRL 309 (389)
Q Consensus 284 ~evEaLq~Q~~RL~~~n~eLRrk~~~ 309 (389)
.+|++|+.|..-|-...+|+-.++..
T Consensus 3 ~eie~L~~q~~~Le~~l~e~E~~~~~ 28 (86)
T 1x8y_A 3 CQLSQLQCQLAAKEAKLRDLEDSLAR 28 (86)
T ss_dssp ---------CTTHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666666666655543
No 90
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=26.14 E-value=2e+02 Score=21.19 Aligned_cols=33 Identities=18% Similarity=0.151 Sum_probs=25.5
Q ss_pred hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q psy10418 285 DVDNLKRQIDRLTSTVRELRRKQRLSQVQVRGL 317 (389)
Q Consensus 285 evEaLq~Q~~RL~~~n~eLRrk~~~~q~Q~r~l 317 (389)
-++.|+.+++.|...|.+|+..+..++.++..|
T Consensus 24 ~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~L 56 (63)
T 2wt7_A 24 LTDTLQAETDQLEDEKSALQTEIANLLKEKEKL 56 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 488899999999999998888776666655443
No 91
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=26.07 E-value=67 Score=24.72 Aligned_cols=27 Identities=22% Similarity=0.405 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHH
Q psy10418 288 NLKRQIDRLTSTVRELRRKQRLSQVQV 314 (389)
Q Consensus 288 aLq~Q~~RL~~~n~eLRrk~~~~q~Q~ 314 (389)
.|+.++++|..-..+|++....+++|+
T Consensus 51 ~L~~~~~~l~~e~~~L~~~~~~L~~~l 77 (83)
T 1nkp_B 51 YMRRKNHTHQQDIDDLKRQNALLEQQV 77 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444443
No 92
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=26.05 E-value=3.9e+02 Score=28.13 Aligned_cols=24 Identities=17% Similarity=0.201 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy10418 305 RKQRLSQVQVRGLIDERADFLAAL 328 (389)
Q Consensus 305 rk~~~~q~Q~r~l~eekadl~a~l 328 (389)
.+++++|+-++.++.+=--|+.++
T Consensus 131 snIrvLQsnLedq~~kIQRLEvDI 154 (562)
T 3ghg_A 131 QHIQLLQKNVRAQLVDMKRLEVDI 154 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555544444444443
No 93
>3geb_A EYES absent homolog 2; hydrolase, activator, alternative splicing, cytoplasm, developmental protein, magnesium, nucleus, polymorphism; 2.40A {Homo sapiens} PDB: 3hb0_A 3hb1_A
Probab=25.76 E-value=8.8 Score=37.01 Aligned_cols=30 Identities=30% Similarity=0.718 Sum_probs=25.0
Q ss_pred cCCchHHHHHHHHHHHHHH--HHHHHHhhCcch
Q psy10418 6 SSTLTVIDVFDIASEIGKE--FEKIIDQYGPDA 36 (389)
Q Consensus 6 ~~~ltveDVydiA~~IG~E--fErli~~~G~d~ 36 (389)
.+.+..+.||.... ||+| ||+|+.+||+.+
T Consensus 200 ~~~fpieNIYSa~k-iGKesCFerI~~RFG~k~ 231 (274)
T 3geb_A 200 GSVFPIENIYSATK-TGKESCFERIMQRFGRKA 231 (274)
T ss_dssp TTTSCGGGEEETTT-TCHHHHHHHHHHHHCTTS
T ss_pred ccceecccccchhh-cCHHHHHHHHHHHhCCCc
Confidence 34567789998776 8988 999999999975
No 94
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=24.81 E-value=1.9e+02 Score=23.13 Aligned_cols=50 Identities=16% Similarity=0.187 Sum_probs=33.0
Q ss_pred HHHHHHhHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHhhHHHHHHHHHHH
Q psy10418 262 RGQVDSLRDQMRLKEKELGYRNSDVDNLKRQIDRLTSTVRELRRKQRLSQ 311 (389)
Q Consensus 262 Ke~VdkQRdeiRak~~el~~k~~evEaLq~Q~~RL~~~n~eLRrk~~~~q 311 (389)
|.+.++.|..|-.-=.|-...-..|+.+++.+.+|...|.+|+--...+|
T Consensus 23 k~lAE~Rr~AL~eaL~EN~~Lh~~ie~~~eEi~~Lk~en~~L~elA~~~q 72 (83)
T 1wlq_A 23 KEVAEQRRKALYEALKENEKLHKEIEQKDSEIARLRKENKDLAEVAEHVQ 72 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455556555544444444555688889999999999998876544443
No 95
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=23.74 E-value=96 Score=22.56 Aligned_cols=24 Identities=29% Similarity=0.386 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhh
Q psy10418 95 TQQLVEMVNRLQEENKKLSKRLEH 118 (389)
Q Consensus 95 ~~eL~~~V~~LqeeN~~L~~~Ls~ 118 (389)
+.+|...|..|+.+|..|...+..
T Consensus 24 ~~~LE~~v~~L~~eN~~L~~~~~~ 47 (55)
T 1dh3_A 24 VKSLENRVAVLENQNKTLIEELKA 47 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666677777777777766653
No 96
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=23.53 E-value=1.1e+02 Score=28.49 Aligned_cols=39 Identities=31% Similarity=0.449 Sum_probs=31.1
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhh
Q psy10418 194 ELKEILHDRNTLKTRLNELEEERQCFKMVNRLQEENKKLSKRLEH 238 (389)
Q Consensus 194 ELreVL~ERNELKa~vf~LqEEl~~~~~V~qLqeeNk~L~~~ls~ 238 (389)
=|.+.|.|=..|...|..+++|++.++. +|..|..-..+
T Consensus 109 AL~eaLeEN~~Lh~~ie~l~eEi~~Lke------En~eLkeLae~ 147 (209)
T 2wvr_A 109 ALYEALKENEKLHKEIEQKDNEIARLKK------ENKELAEVAEH 147 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHH
Confidence 4788999999999999999999988864 66666554443
No 97
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=23.49 E-value=3.8e+02 Score=23.61 Aligned_cols=15 Identities=20% Similarity=0.016 Sum_probs=0.0
Q ss_pred hHHHHHHhhhhhhhh
Q psy10418 268 LRDQMRLKEKELGYR 282 (389)
Q Consensus 268 QRdeiRak~~el~~k 282 (389)
+||.|-..-++|..-
T Consensus 36 ~Rd~~E~~~~~l~~e 50 (152)
T 3a7p_A 36 DRNDKEAHLNELFQD 50 (152)
T ss_dssp ---------------
T ss_pred HhhhHHHHHHHHHHh
Confidence 455555555555443
No 98
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=23.39 E-value=2.9e+02 Score=23.13 Aligned_cols=61 Identities=21% Similarity=0.258 Sum_probs=0.0
Q ss_pred ccHHHHHHHHHh-----------hHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhhcCCCCCccCCCCchhhHHHH
Q psy10418 190 FTTAELKEILHD-----------RNTLKTRLNELEEERQCFKMVNRLQEENKKLSKRLEHEGSSPMKSQQLSPEIDISAL 258 (389)
Q Consensus 190 FTl~ELreVL~E-----------RNELKa~vf~LqEEl~~~~~V~qLqeeNk~L~~~ls~~~~~~~~~~e~~~~~d~~vm 258 (389)
||+.+++++|.- +.-|..++..+++++..++ ..+
T Consensus 60 ~sL~eIk~~l~~~~~~~~~~~~~~~~L~~~~~~l~~~i~~L~-----------------------------------~~~ 104 (142)
T 3gp4_A 60 LSIEALIDYLALFREGEHTLEARAELLKKQRIELKNRIDVMQ-----------------------------------EAL 104 (142)
T ss_dssp CCHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHH-----------------------------------HHH
T ss_pred CCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHH-----------------------------------HHH
Q ss_pred HHHHHHHHHhHHHHHHhhhhhhhhhhh
Q psy10418 259 QKLRGQVDSLRDQMRLKEKELGYRNSD 285 (389)
Q Consensus 259 ~kLKe~VdkQRdeiRak~~el~~k~~e 285 (389)
..|...++.-...+...+.++...|.|
T Consensus 105 ~~L~~~i~~~~~~~~~~~~~~~~~~~~ 131 (142)
T 3gp4_A 105 DRLDFKIDNYDTHLIPAQEELKDFNVE 131 (142)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccCcc
No 99
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=23.34 E-value=2.1e+02 Score=23.73 Aligned_cols=8 Identities=13% Similarity=0.264 Sum_probs=3.0
Q ss_pred HHHHHHHH
Q psy10418 302 ELRRKQRL 309 (389)
Q Consensus 302 eLRrk~~~ 309 (389)
|+|.|.+-
T Consensus 52 e~~eK~re 59 (103)
T 4h22_A 52 QYEEKNKE 59 (103)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 100
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=23.29 E-value=4.2e+02 Score=24.01 Aligned_cols=20 Identities=15% Similarity=0.283 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy10418 313 QVRGLIDERADFLAALQDHQ 332 (389)
Q Consensus 313 Q~r~l~eekadl~a~lq~~~ 332 (389)
-.-.++|+.|=|+..|.+++
T Consensus 138 kln~aiEr~alLE~El~EKe 157 (189)
T 2v71_A 138 RLNQAIERNAFLESELDEKE 157 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34456666666666666544
No 101
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=22.72 E-value=2.8e+02 Score=21.82 Aligned_cols=37 Identities=22% Similarity=0.381 Sum_probs=15.5
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10418 289 LKRQIDRLTSTVRELRRKQRLSQVQVRGLIDERADFL 325 (389)
Q Consensus 289 Lq~Q~~RL~~~n~eLRrk~~~~q~Q~r~l~eekadl~ 325 (389)
|+.|++-|..=...||=.+...+.++..+.++-.|+-
T Consensus 25 Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQrd~Y 61 (83)
T 2xdj_A 25 LQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIL 61 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444444444333333
No 102
>1ytz_I Troponin I; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.2 PDB: 2w49_2 2w4u_2 1yv0_I 1vdi_A 1vdj_A
Probab=22.66 E-value=1.2e+02 Score=27.53 Aligned_cols=42 Identities=26% Similarity=0.325 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy10418 302 ELRRKQRLSQVQVRGLIDERADFLAALQDHQREVAALKQQLG 343 (389)
Q Consensus 302 eLRrk~~~~q~Q~r~l~eekadl~a~lq~~~~ei~~L~~~lg 343 (389)
+|+.+-.-+...+-.|-++|=|++..+..+..||..|+.++.
T Consensus 59 ~L~e~ckELh~~I~~LEeEKYDlE~kvkkq~yEI~dL~~rVn 100 (182)
T 1ytz_I 59 ELQELSKKLHAKIDSVDEERYDTEVKLQKTNKELEDLSQKLF 100 (182)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTG
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHHHHHHHHHHH
Confidence 455555666777778899999999999999999999998885
No 103
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=21.89 E-value=6.2e+02 Score=25.47 Aligned_cols=28 Identities=14% Similarity=0.418 Sum_probs=18.8
Q ss_pred HHHHHHHhh-HHHHHHHHHHHHHHHhhhh
Q psy10418 194 ELKEILHDR-NTLKTRLNELEEERQCFKM 221 (389)
Q Consensus 194 ELreVL~ER-NELKa~vf~LqEEl~~~~~ 221 (389)
+|+.+|-+= -.++.++..|...|..|++
T Consensus 53 rLqg~Ldk~er~~~~rIe~L~~~L~~~s~ 81 (390)
T 1deq_A 53 RMKGLIDEVDQDFTSRINKLRDSLFNYQK 81 (390)
T ss_pred hHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 455555433 3578888888888887764
No 104
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=21.85 E-value=1.8e+02 Score=22.22 Aligned_cols=33 Identities=9% Similarity=0.168 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhc
Q psy10418 87 IEESWKEETQQLVEMVNRLQEENKKLSKRLEHE 119 (389)
Q Consensus 87 ~Ed~~r~E~~eL~~~V~~LqeeN~~L~~~Ls~~ 119 (389)
+...++.++..|...+..|..+|..|...+...
T Consensus 48 YI~~L~~~~~~l~~e~~~L~~~~~~L~~~l~~L 80 (83)
T 1nkp_B 48 YIQYMRRKNHTHQQDIDDLKRQNALLEQQVRAL 80 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455566666677777778888888887777654
No 105
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=21.56 E-value=2.6e+02 Score=20.92 Aligned_cols=38 Identities=24% Similarity=0.328 Sum_probs=26.9
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy10418 291 RQIDRLTSTVRELRRKQRLSQVQVRGLIDERADFLAALQDHQREVAALKQQL 342 (389)
Q Consensus 291 ~Q~~RL~~~n~eLRrk~~~~q~Q~r~l~eekadl~a~lq~~~~ei~~L~~~l 342 (389)
.|+.||..+|.-|-+|+..++-|. -.+++||.+|++=|
T Consensus 11 ~q~~kLKq~n~~L~~kv~~Le~~c--------------~e~eQEieRL~~LL 48 (58)
T 3a2a_A 11 RQLLRLKQMNVQLAAKIQHLEFSC--------------SEKEQEIERLNKLL 48 (58)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHH
Confidence 588899999988888876655443 34567777777544
No 106
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=21.53 E-value=2e+02 Score=22.46 Aligned_cols=46 Identities=22% Similarity=0.366 Sum_probs=34.7
Q ss_pred HHHHHhHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHhhHHHHHHHH
Q psy10418 263 GQVDSLRDQMRLKEKELGYRNSDVDNLKRQIDRLTSTVRELRRKQR 308 (389)
Q Consensus 263 e~VdkQRdeiRak~~el~~k~~evEaLq~Q~~RL~~~n~eLRrk~~ 308 (389)
.+|..-.+.|+.|+.||..+-.=|+.|..+++-.-...++|+....
T Consensus 19 gti~eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLD 64 (72)
T 3nmd_A 19 GSLRDLQYALQEKIEELRQRDALIDELELELDQKDELIQMLQNELD 64 (72)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777888888888888887788888877777777777766553
No 107
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=20.96 E-value=3.5e+02 Score=22.26 Aligned_cols=59 Identities=24% Similarity=0.282 Sum_probs=27.9
Q ss_pred hhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
Q psy10418 282 RNSDVDNLKRQIDRLTSTVRELRRKQRLSQVQVRGLI-------DERADFLAALQDHQREVAALKQ 340 (389)
Q Consensus 282 k~~evEaLq~Q~~RL~~~n~eLRrk~~~~q~Q~r~l~-------eekadl~a~lq~~~~ei~~L~~ 340 (389)
...++.+++..++-|..--.+-..+...+.+-+.+|. =-|+||++.++....||.-|++
T Consensus 39 l~leldn~~~~~edfk~KyE~E~~~r~~~E~di~~lrK~lD~~~l~r~dLE~~iesL~eEl~FLKk 104 (119)
T 3ol1_A 39 VEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQEEIAFLKK 104 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334455555555554332222222233444443333 2466666666666666655553
No 108
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=20.39 E-value=2.5e+02 Score=20.40 Aligned_cols=33 Identities=21% Similarity=0.324 Sum_probs=24.3
Q ss_pred hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q psy10418 285 DVDNLKRQIDRLTSTVRELRRKQRLSQVQVRGL 317 (389)
Q Consensus 285 evEaLq~Q~~RL~~~n~eLRrk~~~~q~Q~r~l 317 (389)
-++.|+..++.|..-|.+|+..+..++.++..|
T Consensus 23 ~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~L 55 (62)
T 1jnm_A 23 RIARLEEKVKTLKAQNSELASTANMLREQVAQL 55 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367788888888888888887777777665544
No 109
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=20.23 E-value=1.5e+02 Score=21.64 Aligned_cols=34 Identities=18% Similarity=0.289 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy10418 81 EREVEEIEESWKEETQQLVEMVNRLQEENKKLSK 114 (389)
Q Consensus 81 ~~Ele~~Ed~~r~E~~eL~~~V~~LqeeN~~L~~ 114 (389)
..|+..+.+..-.+...|...+..|++++..|..
T Consensus 22 ~~EVD~FLd~v~~~~~~l~~e~~~L~~~~~~l~~ 55 (57)
T 2wuj_A 22 EDEVNEFLAQVRKDYEIVLRKKTELEAKVNELDE 55 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4466777777777766666666666666666543
No 110
>3ibp_A Chromosome partition protein MUKB; structural maintenance of chromosomes, SMC, condensin, chromosome segregation, hinge, dimerization domain; 3.10A {Escherichia coli}
Probab=20.08 E-value=6.1e+02 Score=24.70 Aligned_cols=90 Identities=18% Similarity=0.267 Sum_probs=53.9
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHhh----hhhHHHHHHHHHHhhhhhhcCCCCCccCCCCchhhHHHHHHHHHHHHHhH
Q psy10418 194 ELKEILHDRNTLKTRLNELEEERQCF----KMVNRLQEENKKLSKRLEHEGSSPMKSQQLSPEIDISALQKLRGQVDSLR 269 (389)
Q Consensus 194 ELreVL~ERNELKa~vf~LqEEl~~~----~~V~qLqeeNk~L~~~ls~~~~~~~~~~e~~~~~d~~vm~kLKe~VdkQR 269 (389)
++-++..-|.++..+...|+.++..| ..|..++.-...|...+...= +.-..||-.|..+..+-|
T Consensus 11 ~~~~~~e~r~~lr~~~eql~~~i~~L~~~ap~W~~aq~al~rL~eq~g~~~-----------~ds~~v~~~mq~~Le~Er 79 (302)
T 3ibp_A 11 SVSNAREERMALRQEQEQLQSRIQSLMQRAPVWLAAQNSLNQLSEQCGEEF-----------TSSQDVTEYLQQLLERER 79 (302)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC-----------SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHChHHHHHHHHHHHHHHHhCCcC-----------CCHHHHHHHHHHHHHHHH
Confidence 35566778888888888888888766 456667777667766554321 112277777777776553
Q ss_pred HHHHHhhhhhhhhhhhHHHHHHHHHHHHH
Q psy10418 270 DQMRLKEKELGYRNSDVDNLKRQIDRLTS 298 (389)
Q Consensus 270 deiRak~~el~~k~~evEaLq~Q~~RL~~ 298 (389)
.---.++ ++..+ -++|-.|++||..
T Consensus 80 e~~~~Rd-~~a~~---k~~Le~~ierLs~ 104 (302)
T 3ibp_A 80 EAIVERD-EVGAR---KNAVDEEIERLSQ 104 (302)
T ss_dssp HHHHHHH-HHHHH---HHHHHHHHHHHHS
T ss_pred HHHHHHH-HHHHH---HHHHHHHHHHHcC
Confidence 3222222 23222 3455566666544
Done!