Query psy10418
Match_columns 389
No_of_seqs 129 out of 159
Neff 4.6
Searched_HMMs 13730
Date Fri Aug 16 17:23:45 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10418.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/10418hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2oa5a1 d.362.1.1 (A:7-102) Un 54.8 6.4 0.00047 30.6 4.3 43 96-139 5-47 (96)
2 d1gg2g_ a.137.3.1 (G:) Transdu 34.5 17 0.0012 25.1 3.5 49 328-379 2-54 (54)
3 d2efka1 a.238.1.4 (A:10-288) C 23.9 1.7E+02 0.012 23.5 19.6 14 361-374 264-277 (279)
4 d2ap3a1 a.24.27.1 (A:12-196) H 19.6 1.5E+02 0.011 21.2 9.9 50 275-324 135-184 (185)
5 d2c0sa1 a.30.7.1 (A:1-57) Hypo 17.9 1.5E+02 0.011 20.5 6.2 51 258-308 3-53 (57)
6 d2oa5a1 d.362.1.1 (A:7-102) Un 16.8 1.7E+02 0.012 22.1 6.5 36 221-258 10-46 (96)
7 d1wu9a1 a.245.1.1 (A:191-249) 16.3 73 0.0053 22.2 3.9 27 194-220 2-28 (59)
8 d1uklc_ a.38.1.1 (C:) SREBP-2 16.3 69 0.005 21.7 3.8 23 95-117 35-57 (61)
9 d1h1js_ a.140.2.1 (S:) S/mar D 14.5 35 0.0026 22.4 1.7 15 189-203 7-21 (44)
10 d1nkpb_ a.38.1.1 (B:) Max prot 14.2 83 0.0061 22.2 4.0 26 289-314 52-77 (83)
No 1
>d2oa5a1 d.362.1.1 (A:7-102) Uncharacterized protein BQLF2 {Murid herpesvirus 4 [TaxId: 33708]}
Probab=54.79 E-value=6.4 Score=30.59 Aligned_cols=43 Identities=21% Similarity=0.385 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhcCCCCCccCCCCchHHHHHHH
Q psy10418 96 QQLVEMVNRLQEENKKLSKRLEHEGSSPMKSQQLSPEIDISVLQ 139 (389)
Q Consensus 96 ~eL~~~V~~LqeeN~~L~~~Ls~~~~~~~~~~~~~~e~er~vm~ 139 (389)
.+|...+++|+-||+.|...+.+.+... +.+..-+..++++|.
T Consensus 5 EeLaaeL~rL~~ENk~LKkkl~~~~~~~-~~d~~LT~~qke~~I 47 (96)
T d2oa5a1 5 EEMVKEVERLKLENKTLKQKVKSSGAVS-SDDSILTAAKRESII 47 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHTC----------CCBCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCC-CCCccCCHHHHHHHH
Confidence 4688899999999999999998653221 222223345666654
No 2
>d1gg2g_ a.137.3.1 (G:) Transducin (heterotrimeric G protein), gamma chain {Cow (Bos taurus) [TaxId: 9913]}
Probab=34.50 E-value=17 Score=25.08 Aligned_cols=49 Identities=18% Similarity=0.302 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHhhH----HHHhhhhhhccccccCCCCCCCCCCCCCCCCCCCC
Q psy10418 328 LQDHQREVAALKQQLGL----AEKENEDLYNSQETTSEEERPVQGPLPYEPDDAPW 379 (389)
Q Consensus 328 lq~~~~ei~~L~~~lg~----~~k~~~dl~~~~~~~~~~~~pvqgp~p~ep~~~pw 379 (389)
+.+..+++..||.++++ -.+-=++|.+.-..-+..|+=+.|+.| .+-||
T Consensus 2 i~q~rk~VeqLr~e~~~~RikvS~aa~~l~~y~e~~~~~Dpll~g~~~---~~NPf 54 (54)
T d1gg2g_ 2 IAQARKLVEQLKMEANIDRIKVSKAAADLMAYCEAHAKEDPLLTPVPA---SENPF 54 (54)
T ss_dssp HHHHHHHHHHHHHHHSSCCCCHHHHHHHHHHHHHHHGGGCTTTSCCCT---TTSCC
T ss_pred HHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHhcCcCCCCcCCCCC---CCCCC
Confidence 56778899999999983 333455565532333467888888744 45788
No 3
>d2efka1 a.238.1.4 (A:10-288) CDC42-interacting protein 4, CIP4 {Human (Homo sapiens) [TaxId: 9606]}
Probab=23.95 E-value=1.7e+02 Score=23.52 Aligned_cols=14 Identities=14% Similarity=0.257 Sum_probs=11.5
Q ss_pred CCCCCCCCCCCCCC
Q psy10418 361 EEERPVQGPLPYEP 374 (389)
Q Consensus 361 ~~~~pvqgp~p~ep 374 (389)
-+..|.|||++|||
T Consensus 264 ~t~~~~p~~~~fe~ 277 (279)
T d2efka1 264 KSGFARPGDVEFED 277 (279)
T ss_dssp GGGCCCCCCCCCCC
T ss_pred CCCCCCCCCCCCcC
Confidence 34678899999998
No 4
>d2ap3a1 a.24.27.1 (A:12-196) Hypothetical protein MW0975 (SA0943) {Staphylococcus aureus [TaxId: 1280]}
Probab=19.64 E-value=1.5e+02 Score=21.23 Aligned_cols=50 Identities=10% Similarity=0.134 Sum_probs=27.5
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10418 275 KEKELGYRNSDVDNLKRQIDRLTSTVRELRRKQRLSQVQVRGLIDERADF 324 (389)
Q Consensus 275 k~~el~~k~~evEaLq~Q~~RL~~~n~eLRrk~~~~q~Q~r~l~eekadl 324 (389)
....+......+..+..++..|.....++.....-.....+.+-.++-++
T Consensus 135 ~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ek~~l 184 (185)
T d2ap3a1 135 LFKYLNQNDATQQGVNEKSKAIEQNYKKLKEVSDKYTKVLNKVQKEKQDV 184 (185)
T ss_dssp HHHHHTSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 33334444445556666666666666666665555555555555555443
No 5
>d2c0sa1 a.30.7.1 (A:1-57) Hypothetical protein BAS4809, C-terminal domain {Bacillus anthracis [TaxId: 1392]}
Probab=17.92 E-value=1.5e+02 Score=20.47 Aligned_cols=51 Identities=20% Similarity=0.456 Sum_probs=41.9
Q ss_pred HHHHHHHHHHhHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHhhHHHHHHHH
Q psy10418 258 LQKLRGQVDSLRDQMRLKEKELGYRNSDVDNLKRQIDRLTSTVRELRRKQR 308 (389)
Q Consensus 258 m~kLKe~VdkQRdeiRak~~el~~k~~evEaLq~Q~~RL~~~n~eLRrk~~ 308 (389)
|.+|-..|...+.++-......+--..-|=++++.+|+|+..-=-+++|.+
T Consensus 3 ~~~L~~~IE~KK~eLi~Lv~~YGf~h~kvl~~SQELD~LIN~~m~~k~~~k 53 (57)
T d2c0sa1 3 VTKLNDRIEAKKKELIYLVEKYGFTHHKVISFSQELDRLLNLLIELKTKKK 53 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHCS
T ss_pred hHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHHHHhcccc
Confidence 678889999999999988888887777899999999999887666666543
No 6
>d2oa5a1 d.362.1.1 (A:7-102) Uncharacterized protein BQLF2 {Murid herpesvirus 4 [TaxId: 33708]}
Probab=16.82 E-value=1.7e+02 Score=22.11 Aligned_cols=36 Identities=25% Similarity=0.406 Sum_probs=19.1
Q ss_pred hhHHHHHHHHHHhhhhhhcC-CCCCccCCCCchhhHHHH
Q psy10418 221 MVNRLQEENKKLSKRLEHEG-SSPMKSQQLSPEIDISAL 258 (389)
Q Consensus 221 ~V~qLqeeNk~L~~~ls~~~-~~~~~~~e~~~~~d~~vm 258 (389)
.+.+|+.||+.|...+.+.. .+| ..+-.+..++++|
T Consensus 10 eL~rL~~ENk~LKkkl~~~~~~~~--~d~~LT~~qke~~ 46 (96)
T d2oa5a1 10 EVERLKLENKTLKQKVKSSGAVSS--DDSILTAAKRESI 46 (96)
T ss_dssp HHHHHHHHHHHHHHTC-----------CCBCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCC--CCccCCHHHHHHH
Confidence 45677789999999999753 222 2333344455555
No 7
>d1wu9a1 a.245.1.1 (A:191-249) Microtubule-associated protein EB1, C-terminal dimerization domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=16.28 E-value=73 Score=22.15 Aligned_cols=27 Identities=33% Similarity=0.559 Sum_probs=23.8
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHhhh
Q psy10418 194 ELKEILHDRNTLKTRLNELEEERQCFK 220 (389)
Q Consensus 194 ELreVL~ERNELKa~vf~LqEEl~~~~ 220 (389)
|+.++-.+-++||..|..|+.|-+.|=
T Consensus 2 e~~~L~~ei~elk~~v~~lEkERdFYF 28 (59)
T d1wu9a1 2 EAAELMQQVNVLKLTVEDLEKERDFYF 28 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567788899999999999999999773
No 8
>d1uklc_ a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=16.26 E-value=69 Score=21.66 Aligned_cols=23 Identities=22% Similarity=0.267 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhh
Q psy10418 95 TQQLVEMVNRLQEENKKLSKRLE 117 (389)
Q Consensus 95 ~~eL~~~V~~LqeeN~~L~~~Ls 117 (389)
++.|+.++..|++++..|.....
T Consensus 35 I~~Lq~~~~~L~~e~~~L~~~~~ 57 (61)
T d1uklc_ 35 IKYLQQVNHKLRQENMVLKLANQ 57 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777777788777766554
No 9
>d1h1js_ a.140.2.1 (S:) S/mar DNA-binding protein Tho1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=14.54 E-value=35 Score=22.44 Aligned_cols=15 Identities=40% Similarity=0.700 Sum_probs=13.4
Q ss_pred cccHHHHHHHHHhhH
Q psy10418 189 RFTTAELKEILHDRN 203 (389)
Q Consensus 189 rFTl~ELreVL~ERN 203 (389)
.+|..|||++|.+|+
T Consensus 7 ~ltv~eLK~~lk~rg 21 (44)
T d1h1js_ 7 SLTVVQLKDLLTKRN 21 (44)
T ss_dssp GCCHHHHHHHHHHTT
T ss_pred HCcHHHHHHHHHHCC
Confidence 589999999999987
No 10
>d1nkpb_ a.38.1.1 (B:) Max protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=14.19 E-value=83 Score=22.22 Aligned_cols=26 Identities=23% Similarity=0.438 Sum_probs=11.5
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHH
Q psy10418 289 LKRQIDRLTSTVRELRRKQRLSQVQV 314 (389)
Q Consensus 289 Lq~Q~~RL~~~n~eLRrk~~~~q~Q~ 314 (389)
|+.++.+|......|+++...++.++
T Consensus 52 L~~~~~~l~~~~~~l~~~~~~L~~~l 77 (83)
T d1nkpb_ 52 MRRKNHTHQQDIDDLKRQNALLEQQV 77 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444443
Done!