RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10418
(389 letters)
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 67.2 bits (163), Expect = 3e-12
Identities = 77/476 (16%), Positives = 145/476 (30%), Gaps = 141/476 (29%)
Query: 3 DEYSSTLTVIDVFDIASEI--GKEFEKIIDQYGPDAVTSIMPKVIVALEHLECLASKNER 60
D + DV D+ I +E + II DAV+ L L SK E
Sbjct: 27 DAFVDNFDCKDVQDMPKSILSKEEIDHIIMS--KDAVSGT-------LRLFWTLLSKQEE 77
Query: 61 ENTKLQELGDHISKLEHEKLEREVEEIEESWKEETQQ-------LVEMVNRLQEENKKLS 113
K E E L + + K E +Q +E +RL +N+ +
Sbjct: 78 MVQKFVE----------EVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFA 127
Query: 114 K----RLEHEGSSPMKSQQLSPEIDISVLQKLRG---QV---DSLRDQMRLKEKE----- 158
K RL+ +L P ++ ++ + G D + +
Sbjct: 128 KYNVSRLQPYLKLRQALLELRPAKNV-LIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFW 186
Query: 159 --LGYRNSDVDNSDI---------PDLSNKAVYDLDDPNRPRFTTAELKEILH------- 200
L NS ++ P+ ++++ + + R AEL+ +L
Sbjct: 187 LNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENC 246
Query: 201 --------DRNTLK-----------TR----LNELEEERQCFKMVNRLQ-----EENKKL 232
+ TR + L ++ +E K L
Sbjct: 247 LLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSL 306
Query: 233 -SKRLEHEGSSPMKSQQLSPEIDISALQKLRGQVDSLRDQM-RLKEKELGYRNSDVDNLK 290
K L+ + Q L E+ + ++L +S+RD + +++ + D L
Sbjct: 307 LLKYLD------CRPQDLPREVLTTNPRRLSIIAESIRDGLATWDN----WKHVNCDKLT 356
Query: 291 RQIDRLTSTVRELRRKQRLSQVQVRGLIDERADF----------LAAL-----QDHQREV 335
I+ S++ L + R + D + F L+ + + V
Sbjct: 357 TIIE---SSLNV------LEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVV 407
Query: 336 AALKQQLGLAEKENE-------DLYNSQETTSEEERPV--------QGPLPYEPDD 376
+ L EK+ + +Y + E E + P ++ DD
Sbjct: 408 VNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDD 463
Score = 62.9 bits (152), Expect = 9e-11
Identities = 45/330 (13%), Positives = 87/330 (26%), Gaps = 117/330 (35%)
Query: 151 QMRLKEKELGYRNSDVDNSDIPDLSNKAVYDLD-----DPNRPRFTTAELKEILHDRNT- 204
M + E Y+ D+ + + V + D D + + E+ I+ ++
Sbjct: 6 HMDFETGEHQYQYKDI----LSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAV 61
Query: 205 ------------------------------------LKTRLNELEEERQCF-KMVNRLQE 227
+KT + + + + +RL
Sbjct: 62 SGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYN 121
Query: 228 ENKKLSK----RLEHEGSSPMKSQQLSPEIDISALQKLRG---QV---DSLRDQMRLKEK 277
+N+ +K RL+ +L P ++ + + G D +
Sbjct: 122 DNQVFAKYNVSRLQPYLKLRQALLELRPAKNV-LIDGVLGSGKTWVALDVCLSYKVQCKM 180
Query: 278 E-------LGYRNSDVD------NLKRQID---------------RLTSTVRELRRKQRL 309
+ L NS L QID R+ S ELRR +
Sbjct: 181 DFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKS 240
Query: 310 SQ---------------------VQVRGLIDER----ADFLAALQDHQREVAALKQQLGL 344
+ + L+ R DFL+A ++ + L
Sbjct: 241 KPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSA--ATTTHISLDHHSMTL 298
Query: 345 AEKENEDLYNSQETTSEEERPVQ----GPL 370
E + L ++ P + P
Sbjct: 299 TPDEVKSLLLKYLDCRPQDLPREVLTTNPR 328
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment
2, heavy meromyosin, essential light chain, motor
protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1
PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 64.9 bits (158), Expect = 2e-11
Identities = 57/318 (17%), Positives = 121/318 (38%), Gaps = 38/318 (11%)
Query: 54 LASKNERENTKLQELGDHISKLEHEKLEREVEEIEESWK-----EETQQLVEMVNRLQEE 108
L K + E E + +L +K E E E + E +QQL ++Q++
Sbjct: 897 LQEKLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQ 956
Query: 109 NKKLSKRLEHEGSSPMKSQQLSPEIDISVLQKLRGQVDSLRDQMRLKEKELGYRNSDVDN 168
L ++LE E ++ K Q G++ + D + + E + +
Sbjct: 957 MLDLEEQLEEEEAARQKLQL--------EKVTADGKIKKMEDDILIMEDQNNKLTKERKL 1008
Query: 169 SDIPDLSNKAVYDLDDPNRPRFTTAELKEILHDRNTLKTRLNELEEERQCFKMVNRLQEE 228
+ + + +L + + K + +N ++ ++ELE + + ++E
Sbjct: 1009 LE--ERVSDLTTNLAE------EEEKAKNLTKLKNKHESMISELEVRLK---KEEKSRQE 1057
Query: 229 NKKLSKRLEHEGSSPMKSQQLSPEIDISALQKLRGQVDSLRDQMRLKEKELGYRNSDVDN 288
+K+ ++LE E S + + +L+ Q+ L+ Q+ KE+EL + +++
Sbjct: 1058 LEKIKRKLEGESSDLHEQ-----------IAELQAQIAELKAQLAKKEEELQAALARLED 1106
Query: 289 LKRQIDRLTSTVRELRRKQRLSQVQVRGLIDERADFLAALQDHQREVAALKQQL---GLA 345
Q + +REL Q + R +D E+ ALK +L
Sbjct: 1107 ETSQKNNALKKIRELESHISDLQEDLESEKAARNKAEKQKRDLSEELEALKTELEDTLDT 1166
Query: 346 EKENEDLYNSQETTSEEE 363
++L S +++
Sbjct: 1167 TATQQELRGSDYKDDDDK 1184
Score = 50.6 bits (121), Expect = 6e-07
Identities = 59/324 (18%), Positives = 129/324 (39%), Gaps = 38/324 (11%)
Query: 49 EHLECLASKNERENTKLQELGDHISKLEHEKLEREVEEIEESWKEETQQLVEMVNRLQEE 108
E L+ + ++ +L+EL ++L EK ++E ++ E + EM RL +
Sbjct: 864 EELQRTKERQQKAEAELKELEQKHTQLCEEK--NLLQEKLQAETELYAEAEEMRVRLAAK 921
Query: 109 NKKLSKRLEHEGSSPMKSQQLSPEIDISVLQKLRGQVDSLRDQMRLKEKELGYRNSDVDN 168
++L + L HE + ++ ++ + + +K++ Q+ L +Q+ +E +
Sbjct: 922 KQELEEIL-HEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVT 980
Query: 169 SDIPDLSNKAVYDLDDPNRPRFTTAELKEILHDRNTLKTRLNELEEERQCFKMVNRLQEE 228
+D + + ++ + N L LEE + L EE
Sbjct: 981 AD---------------GKIKKMEDDILIMEDQNNKLTKERKLLEERVS--DLTTNLAEE 1023
Query: 229 NKKLSKRLEHEGSSPMKSQQLSPEIDISALQKLRGQVDSLRDQMRLKEKELGYRNSDVDN 288
+K L + +S E+ + +K R +++ ++ ++ + +L + +
Sbjct: 1024 EEKAKN-LTKLKNK-HESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQ---IAE 1078
Query: 289 LKRQIDRLTSTVRELRRKQRLSQVQVRGLIDERA----------DFLAALQDHQREVAAL 338
L+ QI L + +L +K+ Q + L DE + + + + D Q ++ +
Sbjct: 1079 LQAQIAELKA---QLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQEDLESE 1135
Query: 339 KQQLGLAEKENEDLYNSQETTSEE 362
K AEK+ DL E E
Sbjct: 1136 KAARNKAEKQKRDLSEELEALKTE 1159
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 47.8 bits (114), Expect = 4e-06
Identities = 26/215 (12%), Positives = 75/215 (34%), Gaps = 51/215 (23%)
Query: 59 ERENTKLQELGDHISKLEHE--KLEREVEEIEESWKEETQQLVEMVNRLQEENKKLSKRL 116
R + ++L LE++ +L+R+++E + +K +++ + E +KL +
Sbjct: 913 ARSVERYKKL---HIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDV 969
Query: 117 EHEGSSPMKSQQLSPEIDISVLQKLRGQVDSLRDQMRLKEKELGYRNSDVDNSDIPDLSN 176
E L+ + + +++ ++E+ ++ +
Sbjct: 970 ER-------------------LRMSEEEAKNATNRVLSLQEEIAKLRKELHQT------- 1003
Query: 177 KAVYDLDDPNRPRFTTAELKEILHDRNTLKTRLNELEEERQCFKMVNRLQEENKKLSKRL 236
E K I + K +L E + + L+ E ++L++R+
Sbjct: 1004 ---------------QTEKKTIEEWADKYKHETEQLVSELK--EQNTLLKTEKEELNRRI 1046
Query: 237 EHEGSSPMKSQQLSPEIDISALQKLRGQVDSLRDQ 271
+ ++ + ++L ++ R +
Sbjct: 1047 HDQAKEITETMEKKLV---EETKQLELDLNDERLR 1078
Score = 42.4 bits (100), Expect = 2e-04
Identities = 21/165 (12%), Positives = 62/165 (37%), Gaps = 14/165 (8%)
Query: 194 ELKEILHDRNTLKTRLNELEEERQCFKMVNRLQEENKKLSKRLEHEGSSPMKSQQLSPEI 253
+LK K LE + ++ ++ E+NK+ LE + + + ++
Sbjct: 908 KLKIEARSVERYKKLHIGLENKIM--QLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKL 965
Query: 254 --DISALQKLRGQVDSLRDQMRLKEKELGYRNSDVDNLKRQIDRLTSTVRELRRKQRLSQ 311
D+ L+ + + +++ ++E+ L++++ + + + + +
Sbjct: 966 RSDVERLRMSEEEAKNATNRVLSLQEEI-------AKLRKELHQTQTEKKTIEEWADKYK 1018
Query: 312 VQVRGLIDERADFLAALQDHQREVAALKQQLGLAEKENEDLYNSQ 356
+ L+ E + L + E L +++ KE + +
Sbjct: 1019 HETEQLVSELKEQNTLL---KTEKEELNRRIHDQAKEITETMEKK 1060
Score = 37.8 bits (88), Expect = 0.006
Identities = 23/159 (14%), Positives = 58/159 (36%), Gaps = 4/159 (2%)
Query: 208 RLNELEEERQCFKMVNRLQEENKKLSKRLEHEGSSPMKSQQLSPEIDISALQKLRG---- 263
R + + + + R K L S ++ + + L+
Sbjct: 834 RYQCMRDATIALQALLRGYLVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRTLKAIVYL 893
Query: 264 QVDSLRDQMRLKEKELGYRNSDVDNLKRQIDRLTSTVRELRRKQRLSQVQVRGLIDERAD 323
Q R + + K+L V+ K+ L + + +L+RK + + L+++ +
Sbjct: 894 QCCYRRMMAKRELKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNN 953
Query: 324 FLAALQDHQREVAALKQQLGLAEKENEDLYNSQETTSEE 362
++ + ++L ++E+E ++ N + EE
Sbjct: 954 LEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEE 992
Score = 35.9 bits (83), Expect = 0.024
Identities = 14/67 (20%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
Query: 54 LASKNERENTKLQELGDHISKLEHEKLEREVEEIEESWKEETQQLVE-MVNRLQEENKKL 112
+ ++ + ++L + + ++ L+ E EE+ ++ +++ E M +L EE K+L
Sbjct: 1010 IEEWADKYKHETEQLVSELKE-QNTLLKTEKEELNRRIHDQAKEITETMEKKLVEETKQL 1068
Query: 113 SKRLEHE 119
L E
Sbjct: 1069 ELDLNDE 1075
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 43.1 bits (101), Expect = 2e-04
Identities = 31/149 (20%), Positives = 55/149 (36%), Gaps = 42/149 (28%)
Query: 4 EYSSTLTVIDVFDIASEIGKEFEKIIDQYGPDAVTSIMPKVIVALEHLECLASKNERENT 63
EY++ ++ DV I S + +++ G + +P+ + + +A R
Sbjct: 1766 EYAALASLADVMSIESLV-----EVVFYRG-MTMQVAVPRDELGRSNYGMIAINPGRV-- 1817
Query: 64 KLQELGDHISKLEHEKLEREVEEIEESWKEETQQLVEMVNRLQEENK------------K 111
+ E L+ VE + + T LVE+VN EN+
Sbjct: 1818 --------AASFSQEALQYVVERVGK----RTGWLVEIVN-YNVENQQYVAAGDLRALDT 1864
Query: 112 LSKRLEHEGSSPMKSQQLSPEIDISVLQK 140
++ L +K Q+ IDI LQK
Sbjct: 1865 VTNVLNF-----IKLQK----IDIIELQK 1884
Score = 41.6 bits (97), Expect = 5e-04
Identities = 63/310 (20%), Positives = 101/310 (32%), Gaps = 111/310 (35%)
Query: 3 DEYSSTLTVIDVFDIASEIGKEFEKIIDQYGPDAVTSIM---PKVIVALEHLECLASKNE 59
D Y ++ DV++ A D YG ++ I+ P + H K
Sbjct: 1634 DLYKTSKAAQDVWNRAD------NHFKDTYGF-SILDIVINNPVNLTI--HFGGEKGKRI 1684
Query: 60 RENT---KLQELGDHISKLEHEKLEREVEE-----IEESWKEE---TQ--Q----LVEMV 102
REN + + D KL+ EK+ +E+ E S K TQ Q L+E
Sbjct: 1685 RENYSAMIFETIVD--GKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKA 1742
Query: 103 NRLQEENKKLSKRLEHEGSSPMK-----------------SQQLSPEID-ISVLQKLRGQ 144
+ L+ +G P + +S E + V+ RG
Sbjct: 1743 ---------AFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIE-SLVEVV-FYRGM 1791
Query: 145 VDSLRDQMRLKEKELGYRNSDVDNSDIPDLSNKAVYDLDDPNR--PRFTTAELKEILHDR 202
Q+ + ELG N + A+ +P R F+ L+ ++
Sbjct: 1792 T----MQVAVPRDELGRSNYGM----------IAI----NPGRVAASFSQEALQYVV--- 1830
Query: 203 NTLKTRLNELEEERQCFKMVNRLQEENK------------KLSKRLEHEGSSPMKSQQLS 250
+ R L E +VN EN+ ++ L +K Q+
Sbjct: 1831 ERVGKRTGWLVE------IVN-YNVENQQYVAAGDLRALDTVTNVLNF-----IKLQK-- 1876
Query: 251 PEIDISALQK 260
IDI LQK
Sbjct: 1877 --IDIIELQK 1884
Score = 39.6 bits (92), Expect = 0.002
Identities = 56/310 (18%), Positives = 86/310 (27%), Gaps = 124/310 (40%)
Query: 112 LSKR---LEHEGSSPMKSQQLSPEIDISVLQKLRGQVDSLRDQMRLKEKELGYRNSDVDN 168
S R L H GS L + + L++Q N
Sbjct: 4 YSTRPLTLSH-GS-------LEHVLLVPTASFFIASQ--LQEQF---------------N 38
Query: 169 SDIPDLSNKAVYDLDDPNRP-----RF-----TTAELKEILHDRNTLKTRLNELEEERQC 218
+P+ + D D+P P +F + E ++ L L E E C
Sbjct: 39 KILPEPTEGFAAD-DEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFE---NC 94
Query: 219 F-------KMVNRL-QEENKKLSKRLE---------HEGSSPMKSQQLSPEIDISALQKL 261
+ + +L QE + L K E P + S SAL
Sbjct: 95 YLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKK--SN----SAL--F 146
Query: 262 R--------------GQVDSLRDQMRLKEKELGYRNSDVDNLKRQIDRLTSTVRELRRKQ 307
R GQ G N+D ELR
Sbjct: 147 RAVGEGNAQLVAIFGGQ---------------G--NTDD------------YFEELRDLY 177
Query: 308 RLSQVQVRGLIDERADFLAALQDHQREVAALKQQLGLAEKENEDLY---NSQETTSEEER 364
+ V V LI A+ L+ L + + Q GL ++ + T +++
Sbjct: 178 QTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQ-GL------NILEWLENPSNTPDKDY 230
Query: 365 ----PVQGPL 370
P+ PL
Sbjct: 231 LLSIPISCPL 240
Score = 33.9 bits (77), Expect = 0.12
Identities = 27/164 (16%), Positives = 53/164 (32%), Gaps = 57/164 (34%)
Query: 72 ISKLEHEKLEREVEEIEESWKEETQ-------------------QLVEMVNRLQ------ 106
IS L E+++ V + Q L + L+
Sbjct: 341 ISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPS 400
Query: 107 --EENK-KLSKR---LEHEG---SSPMKSQQLSPEIDISVLQKLRGQVDSLRDQMRLKEK 157
++++ S+R + +SP S L P D+ + + D +++ + K
Sbjct: 401 GLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDL-INK------DLVKNNVSFNAK 453
Query: 158 ELGYRNSDVDNSDIPDLSNKAVYDLDDPNRPRFTTAELKEILHD 201
++ IP VYD D + R + + E + D
Sbjct: 454 DIQ----------IP------VYDTFDGSDLRVLSGSISERIVD 481
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM,
protein engineering, structural protein; HET: ADP; 2.80A
{Dictyostelium discoideum} SCOP: k.1.1.1
Length = 1010
Score = 37.3 bits (87), Expect = 0.008
Identities = 22/165 (13%), Positives = 60/165 (36%), Gaps = 14/165 (8%)
Query: 193 AELKEILHDRNTLKTRLNELEEERQCFKMVNRLQEENKKLSKRLEHEGSSPMKSQQLSPE 252
+ + L + ++ K+ LQ+ N+ L K + +
Sbjct: 858 STWSALEKAEQEHAEALRIELKRQK--KIAVLLQKYNRILKKLENWATTKSVYLGSNETG 915
Query: 253 IDISALQKLRGQVDSLRDQMRLKEKELGYRNSDVDNLKRQIDRLTSTVRELRRKQRLSQV 312
I+A+Q +++ + + E + NSD+ ++ Q+ L L++
Sbjct: 916 DSITAVQAKLKNLEAFDGECQSLEGQS---NSDLLSILAQLTEL-----NYNGVPELTER 967
Query: 313 QVRGLIDERADFLAALQDHQREVAALKQQLGLAEKENEDLYNSQE 357
+ + ++ + ++ + A ++L ++ EDL++
Sbjct: 968 KDTFFAQQWTGVKSSAETYKNTLLAELERL----QKIEDLHHHHH 1008
Score = 35.0 bits (81), Expect = 0.050
Identities = 23/163 (14%), Positives = 53/163 (32%), Gaps = 11/163 (6%)
Query: 76 EHEKLEREVEEIEESWKEETQQLVEMVNRLQEENKKLSKRLEHEGSSPMKSQQLSPEIDI 135
LE+ +E E+ + E ++ ++ LQ+ N+ L K + + I
Sbjct: 859 TWSALEKAEQEHAEALRIELKRQKKIAVLLQKYNRILKKLENWATTKSVYLGSNETGDSI 918
Query: 136 SVLQKLRGQVDSLRDQMRLKEKELGYRNSDVDNSDIPDLSNKAVYDLDDPNRPRFTTAEL 195
+ +Q +++ + + E + NSD+ + + + P T +
Sbjct: 919 TAVQAKLKNLEAFDGECQSLEGQS--------NSDLLSILAQLTELNYN-GVPELTERKD 969
Query: 196 KEILHDRNTLKTRLNELEEERQCFKMVNRLQEENKKLSKRLEH 238
+K+ + + RLQ+ H
Sbjct: 970 TFFAQQWTGVKSSAETYKNTLL--AELERLQKIEDLHHHHHHH 1010
Score = 30.4 bits (69), Expect = 1.2
Identities = 6/77 (7%), Positives = 21/77 (27%)
Query: 43 KVIVALEHLECLASKNERENTKLQELGDHISKLEHEKLEREVEEIEESWKEETQQLVEMV 102
V + + + + L+ LE + + + + + + E+
Sbjct: 906 SVYLGSNETGDSITAVQAKLKNLEAFDGECQSLEGQSNSDLLSILAQLTELNYNGVPELT 965
Query: 103 NRLQEENKKLSKRLEHE 119
R + ++
Sbjct: 966 ERKDTFFAQQWTGVKSS 982
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 35.3 bits (80), Expect = 0.010
Identities = 7/21 (33%), Positives = 11/21 (52%), Gaps = 3/21 (14%)
Query: 361 EEE--RPVQGPL-PYEPDDAP 378
E++ + +Q L Y D AP
Sbjct: 18 EKQALKKLQASLKLYADDSAP 38
Score = 29.5 bits (65), Expect = 1.1
Identities = 9/32 (28%), Positives = 12/32 (37%), Gaps = 13/32 (40%)
Query: 94 ETQQLVEMVNRLQEENKKLSKRLE--HEGSSP 123
E Q L KKL L+ + S+P
Sbjct: 18 EKQAL-----------KKLQASLKLYADDSAP 38
Score = 28.4 bits (62), Expect = 2.4
Identities = 5/32 (15%), Positives = 13/32 (40%), Gaps = 7/32 (21%)
Query: 20 EIGKEFEKIIDQYGPDAVTSIMPKVIV--ALE 49
+ K+ + + Y D+ P + + +E
Sbjct: 21 AL-KKLQASLKLYADDSA----PALAIKATME 47
Score = 28.0 bits (61), Expect = 3.5
Identities = 8/33 (24%), Positives = 14/33 (42%), Gaps = 8/33 (24%)
Query: 226 QEENKKLSKRLE-HEGSSPMKSQQLSPEIDISA 257
++ KKL L+ + S +P + I A
Sbjct: 19 KQALKKLQASLKLYADDS-------APALAIKA 44
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain,
aminoacyl-tRNA synthetase, ATP-binding, cytoplasm,
ligase, nucleotide-binding; 3.20A {Archaeoglobus
fulgidus}
Length = 171
Score = 35.7 bits (83), Expect = 0.011
Identities = 22/93 (23%), Positives = 37/93 (39%), Gaps = 18/93 (19%)
Query: 78 EKLEREVEEIEESWKEETQQLVEMVNRLQEENKKLSKRLEHEGSSPMKSQQLSPEID--- 134
E++ER + E + E +L + V R EE K K +E +KS D
Sbjct: 10 EEMERLLREASSILRVEPAKLPKTVERFFEEWKDQRKEIER-----LKSVIADLWADILM 64
Query: 135 --------ISVL-QKLRGQVDSLRDQM-RLKEK 157
+ V+ + + + +L+ RL EK
Sbjct: 65 ERAEEFDSMKVVAEVVDADMQALQKLAERLAEK 97
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor,
microtubles, motor protein; HET: ADP SPM; 2.81A
{Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C*
Length = 3245
Score = 36.8 bits (85), Expect = 0.016
Identities = 46/318 (14%), Positives = 106/318 (33%), Gaps = 44/318 (13%)
Query: 10 TVIDVFDIASE-----IGKEFEKIIDQYGPDAVT-SIMPKVIVALEHLECLASKNEREN- 62
V+D F S +G EF + +D P + + + + + + R+
Sbjct: 1805 CVLDWFGEWSPEALFQVGSEFTRNLDLENPQYIAPPVFIQEAEIMGNNLMAIPPSHRDAV 1864
Query: 63 ----TKLQELGDHISKLEHEKLEREVEEIEESWKEETQQLVEMVNRLQEENKKLSKRLEH 118
+ + + ++ R+ + + Q+V ++N +++ ++ L
Sbjct: 1865 VSSLVYIHQTIGEANIRLLKRQGRQNYVTPRHYLDFINQVVLLINEKRDQLEEEQLHLN- 1923
Query: 119 EGSSPMKSQQLSPEIDISVLQKLR---GQVDSLRDQMRLKEKELGYRNSDVDNSDIPDLS 175
L+KLR QV L+ + K +EL DV N
Sbjct: 1924 -----------------IGLKKLRDTEAQVKDLQVSLAQKNREL-----DVKNEQANQKL 1961
Query: 176 NKAVYDLDDPNRPRFTTAELKEILHDRNT-LKTRLNELEEERQCFKMVNRLQEENKKLSK 234
+ V D + EL+ L RN + + + + + + L+EE ++L
Sbjct: 1962 KQMVQDQQAAEIKQKDARELQVQLDVRNKEIAVQKVKAYADLEKAEPTGPLREEVEQLEN 2021
Query: 235 RLEHEGSSPMKSQQL--SPEIDISALQK----LRGQVDSLRDQMRLKEKELGYRNSDVDN 288
+ + E I+ ++ L + + ++ + + ++ + +DN
Sbjct: 2022 AANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIALLDN 2081
Query: 289 LKRQIDRLTSTVRELRRK 306
L + R +
Sbjct: 2082 LNSERGRWEQQSENFNTQ 2099
Score = 32.6 bits (74), Expect = 0.26
Identities = 28/175 (16%), Positives = 60/175 (34%), Gaps = 24/175 (13%)
Query: 202 RNTLKTRLNELEEERQCFKMVNRLQEENKKLSKRLEHEGSSPMKSQQLSPEIDISALQKL 261
R T + L+ Q ++N +++ ++ L L+KL
Sbjct: 1888 RQNYVTPRHYLDFINQVVLLINEKRDQLEEEQLHLN------------------IGLKKL 1929
Query: 262 R---GQVDSLRDQMRLKEKELGYRNSDVDNLKRQIDRLTSTVRELRRKQRLSQVQVRGL- 317
R QV L+ + K +EL +N + +Q+ + ++ R QVQ+
Sbjct: 1930 RDTEAQVKDLQVSLAQKNRELDVKNEQANQKLKQMVQDQQAAEIKQKDARELQVQLDVRN 1989
Query: 318 --IDERADFLAALQDHQREVAALKQQLGLAEKENEDLYNSQETTSEEERPVQGPL 370
I + A + L++++ E +L Q+ ++ +
Sbjct: 1990 KEIAVQKVKAYADLEKAEPTGPLREEVEQLENAANELKLKQDEIVATITALEKSI 2044
>1bf5_A Signal transducer and activator of transcription 1-alpha/beta;
complex (SH2 domain/DNA), SH2 domain, transcription
factor; HET: DNA PTR; 2.90A {Homo sapiens} SCOP:
a.47.1.1 b.2.5.5 d.93.1.1
Length = 575
Score = 35.6 bits (81), Expect = 0.028
Identities = 34/178 (19%), Positives = 65/178 (36%), Gaps = 13/178 (7%)
Query: 196 KEILHDRNTLKTRLNELEEERQCFKMVNRLQEENKKLSKRLEHEGSSPMKSQQLSPEIDI 255
KE+ +K ++ +E E + + LQ+E K L++ + + +
Sbjct: 5 KELDSKVRNVKDKVMCIEHEIKSLE---DLQDEYDFKCKTLQNREHETNGVAKSDQKQEQ 61
Query: 256 SALQKLRGQVDSLRDQMRLKEKELGYRNSDVDNLKRQIDRLTSTVRELRRKQRLSQVQVR 315
L+K+ +D+ R ++ K EL ++ + + L + EL +R Q
Sbjct: 62 LLLKKMYLMLDNKRKEVVHKIIEL------LNVTELTQNALIN--DELVEWKRRQQSACI 113
Query: 316 GLIDERADFLAALQDHQREVAALKQQLGLAEKENEDLYNSQETTSEEERPVQGPLPYE 373
G L LQ+ VA QQ+ K+ E+L + + L
Sbjct: 114 GGPPN--ACLDQLQNWFTIVAESLQQVRQQLKKLEELEQKYTYEHDPITKNKQVLWDR 169
>2adl_A CCDA; ribbon-helix-helix, DNA binding protein; NMR {Escherichia
coli} PDB: 2adn_A 2h3a_A 2h3c_A
Length = 72
Score = 31.8 bits (72), Expect = 0.056
Identities = 14/51 (27%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
Query: 64 KLQELGDHISKLEHEKLEREVEEIE-ESWKEETQQLVEMVNRLQEENKKLS 113
L+ +IS L ++ E + E WK E Q+ + V R E N +
Sbjct: 16 LLKAYDVNISGLVSTTMQNEARRLRAERWKVENQEGMVEVARFIEMNGSFA 66
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 33.2 bits (75), Expect = 0.077
Identities = 13/68 (19%), Positives = 33/68 (48%)
Query: 52 ECLASKNERENTKLQELGDHISKLEHEKLEREVEEIEESWKEETQQLVEMVNRLQEENKK 111
E + E + +LQEL +E E E+ +++EE + +++Q+ + + +K
Sbjct: 85 ESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKA 144
Query: 112 LSKRLEHE 119
++ + +
Sbjct: 145 FYQQPDAD 152
Score = 32.8 bits (74), Expect = 0.11
Identities = 15/92 (16%), Positives = 39/92 (42%), Gaps = 15/92 (16%)
Query: 76 EHEKLEREVEEIEESWKEETQQLVEMVNRLQEENKKLSKRLEHEGSSPMKSQQLSPEIDI 135
+ ++L +E E I + W+EE ++ ++ L +K + + + ++
Sbjct: 76 QADRLTQEPESIRK-WREEQRKRLQ---ELDAASKVMEQEWREKAKKDLEEWN------- 124
Query: 136 SVLQKLRGQVDSLRDQMRLKEKE-LGYRNSDV 166
Q+ QV+ + R+ +K ++D+
Sbjct: 125 ---QRQSEQVEKNKINNRIADKAFYQQPDADI 153
Score = 27.8 bits (61), Expect = 4.3
Identities = 16/76 (21%), Positives = 32/76 (42%), Gaps = 19/76 (25%)
Query: 292 QIDRLTS---TVRELRRKQRLSQVQVRGLIDERADFLAALQDHQREVAALKQQLGLAEKE 348
Q DRLT ++R+ R +QR ++Q D + + +++ A+K+
Sbjct: 76 QADRLTQEPESIRKWREEQRK-RLQEL---DAAS---------KVMEQEWREK---AKKD 119
Query: 349 NEDLYNSQETTSEEER 364
E+ Q E+ +
Sbjct: 120 LEEWNQRQSEQVEKNK 135
Score = 27.4 bits (60), Expect = 7.0
Identities = 12/82 (14%), Positives = 35/82 (42%), Gaps = 5/82 (6%)
Query: 207 TRLNELEEERQCFKMVNRLQEENKKLSKRLEHEGSSPMKSQQLSPEIDISALQKLRG-QV 265
+ + L +E + + + +EE +K + L+ + + + D+ + + QV
Sbjct: 75 AQADRLTQEPESIR---KWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQV 131
Query: 266 DSLRDQMRLKEKE-LGYRNSDV 286
+ + R+ +K ++D+
Sbjct: 132 EKNKINNRIADKAFYQQPDADI 153
Score = 27.0 bits (59), Expect = 9.4
Identities = 12/58 (20%), Positives = 29/58 (50%), Gaps = 6/58 (10%)
Query: 64 KLQELGDHISK------LEHEKLEREVEEIEESWKEETQQLVEMVNRLQEENKKLSKR 115
+L + + I K ++L+ + +E+ W+E+ ++ +E N+ Q E + +K
Sbjct: 79 RLTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKI 136
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome
segregation, cell adhesion, kleisin, MIT cell cycle;
HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP:
c.37.1.12
Length = 430
Score = 33.1 bits (76), Expect = 0.15
Identities = 29/170 (17%), Positives = 59/170 (34%), Gaps = 14/170 (8%)
Query: 77 HEKLEREVEEIEESWKEETQQLVEMVNRLQEENKKLSKRLEH-EGSSPMKSQQLSPEIDI 135
LE E I+ Q VE + +LS+ E GS K + + I
Sbjct: 132 SIFLENENILIKAKNFLVFQGDVE--QIAAQSPVELSRMFEEVSGSIQYKKEYEELKEKI 189
Query: 136 SVLQKLRGQVDSLRDQMRLKEKELGYRNSDVDNSDIPDLSNKAVYDLDDPNRPRFTTAEL 195
L K + R ++ + K +V + + YD + R E
Sbjct: 190 EKLSKSATESIKNRRRIHGELKTYKSPGLEV----LFQGPRGSRYD-EAEGRFEVINNET 244
Query: 196 KEILHDRNTLKTRLNELEEER-----QCFKMVN-RLQEENKKLSKRLEHE 239
+++ + + + +++++R + F V+ L ++L+K
Sbjct: 245 EQLKAEEKKILNQFLKIKKKRKELFEKTFDYVSDHLDAIYRELTKNPNSN 294
>2de0_X Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltransferase,
N-glycan, COR SH3 domain; 2.61A {Homo sapiens}
Length = 526
Score = 31.8 bits (71), Expect = 0.39
Identities = 24/145 (16%), Positives = 51/145 (35%), Gaps = 5/145 (3%)
Query: 42 PKVIVALEHLECLASKNERENTKLQELGDHISKLEHEKLEREVE-EIEESWKEETQQLVE 100
I + LE K + + ++ + +HE L R +E +E W +L
Sbjct: 15 GPAIGRVRVLEEQLVKAKEQIENYKKQTRNGLGKDHEILRRRIENGAKELWFFLQSEL-- 72
Query: 101 MVNRLQEENKKLSKRLEHEGSSPMKSQQLSPEIDISVLQKLRGQVDSLRDQMRLKEKELG 160
+L+ +R E + + S D+ L + G D + + + +
Sbjct: 73 --KKLKNLEGNELQRHADEFLLDLGHHERSIMTDLYYLSQTDGAGDWREKEAKDLTELVQ 130
Query: 161 YRNSDVDNSDIPDLSNKAVYDLDDP 185
R + + N + K V +++
Sbjct: 131 RRITYLQNPKDCSKAKKLVCNINKG 155
>2y9y_B IOC3, ISWI one complex protein 3; transcription, nuclear protein
complex, chromatin remodeling nucleosome remodeling;
3.25A {Saccharomyces cerevisiae} PDB: 2y9z_B
Length = 624
Score = 31.0 bits (69), Expect = 0.77
Identities = 20/118 (16%), Positives = 42/118 (35%), Gaps = 10/118 (8%)
Query: 197 EILHDRNTLKTRLNELE------EERQCFKMVNRLQEENKKLSKRLEHEGSSPMKSQQLS 250
E+ HD TL L L+ ++ + + N + + + S +
Sbjct: 504 ELCHDSATLLEFLEFLDYKIVKPQDEKKEGNEKEKEALNNEAHILEQKSTTDNKPSINTN 563
Query: 251 PEIDISALQKLRGQVDSLRDQMRLKEKELGYRNSDVDNLKRQIDRLTSTVRELRRKQR 308
P + R ++ L++ + + + + +K Q + R+LRR QR
Sbjct: 564 PLPKDAKYNTARKKLQILKEFL----SDYYFILRQFEQMKVQFADMKPGKRQLRRIQR 617
>2e7z_A Acetylene hydratase AHY; tungstoprotein, DMSO reductase family,
iron-sulfur-cluster, lyase; HET: MGD; 1.26A {Pelobacter
acetylenicus}
Length = 727
Score = 30.7 bits (70), Expect = 0.81
Identities = 8/19 (42%), Positives = 15/19 (78%)
Query: 19 SEIGKEFEKIIDQYGPDAV 37
EI ++ +KII +YGP+++
Sbjct: 85 DEIAEKLKKIIAKYGPESL 103
>4eu1_A Mitochondrial aspartate aminotransferase; ssgcid, structural
genomics, SEA structural genomics center for infectious
disease; HET: LLP; 2.30A {Trypanosoma brucei}
Length = 409
Score = 30.3 bits (69), Expect = 1.0
Identities = 20/78 (25%), Positives = 33/78 (42%), Gaps = 25/78 (32%)
Query: 85 EEIEESWKEETQQLVEMVNRLQEENKKLSKRLEHEGS----SPMKSQQ-------LSPEI 133
++ WK+E L +M +R+ E K+L L+ GS S ++ Q L+ E
Sbjct: 313 PQLTALWKKE---LKQMSSRIAEVRKRLVSELKACGSVHDWSHIERQVGMMAYTGLTRE- 368
Query: 134 DISVLQKLRGQVDSLRDQ 151
QV+ LR +
Sbjct: 369 ----------QVELLRSE 376
>1yaa_A Aspartate aminotransferase; HET: PLP; 2.05A {Saccharomyces
cerevisiae} SCOP: c.67.1.1
Length = 412
Score = 30.3 bits (69), Expect = 1.0
Identities = 14/78 (17%), Positives = 27/78 (34%), Gaps = 25/78 (32%)
Query: 85 EEIEESWKEETQQLVEMVNRLQEENKKLSKRLEHEGS----SPMKSQQ-------LSPEI 133
E+ E W ++ +V M +R+ + L L G+ + +Q L+P+
Sbjct: 313 PELTEQWHKD---MVTMSSRITKMRHALRDHLVKLGTPGNWDHIVNQCGMFSFTGLTPQ- 368
Query: 134 DISVLQKLRGQVDSLRDQ 151
V L +
Sbjct: 369 ----------MVKRLEET 376
>2vpz_A Thiosulfate reductase; oxidoreductase, molybdopterin guanine
dinucleotide, iron-sulfur, metal-binding, molybdopterin;
HET: MGD; 2.40A {Thermus thermophilus} PDB: 2vpx_A*
2vpw_A* 2vpy_A*
Length = 765
Score = 30.7 bits (70), Expect = 1.0
Identities = 7/19 (36%), Positives = 13/19 (68%)
Query: 19 SEIGKEFEKIIDQYGPDAV 37
I K+ +I ++YGP+A+
Sbjct: 122 DHIAKKMLEIREKYGPEAI 140
>1rrm_A Lactaldehyde reductase; structural genomics, dehydrogenase, PSI,
protein structure initiative; HET: APR; 1.60A
{Escherichia coli} SCOP: e.22.1.2 PDB: 2bi4_A* 2bl4_A*
Length = 386
Score = 30.2 bits (69), Expect = 1.1
Identities = 13/46 (28%), Positives = 22/46 (47%), Gaps = 6/46 (13%)
Query: 157 KELGYRNSDVDNSDIPDLSNKAVYDLDDPNRPRFTT-AELKEILHD 201
+++G V DIP L+ A+ D+ PR T ++ E+ H
Sbjct: 341 RDVG-----VRKEDIPALAQAALDDVCTGGNPREATLEDIVELYHT 381
>3ox4_A Alcohol dehydrogenase 2; iron, NAD, oxidoreductase; HET: NAD; 2.00A
{Zymomonas mobilis} PDB: 3owo_A*
Length = 383
Score = 30.2 bits (69), Expect = 1.1
Identities = 14/66 (21%), Positives = 24/66 (36%), Gaps = 8/66 (12%)
Query: 139 QKLRGQVDSLRDQMRLKE--KELGYRNSDVDNSDIPDLSNKAVYDLDDPNRPRFTT-AEL 195
+ V L + + ELG D+P L++ A+ D PR E+
Sbjct: 321 EATIQAVRDLAASIGIPANLTELG-----AKKEDVPLLADHALKDACALTNPRQGDQKEV 375
Query: 196 KEILHD 201
+E+
Sbjct: 376 EELFLS 381
>7aat_A Aspartate aminotransferase; transferase(aminotransferase); HET:
PLP; 1.90A {Gallus gallus} SCOP: c.67.1.1 PDB: 1ivr_A*
1map_A* 1maq_A* 1oxo_A* 1oxp_A* 1ama_A* 1tas_A* 1tat_A*
1tar_A* 8aat_A* 9aat_A* 1aka_A* 1akb_A* 1akc_A* 3pd6_A*
3hlm_A* 3pdb_A*
Length = 401
Score = 30.2 bits (69), Expect = 1.3
Identities = 17/78 (21%), Positives = 27/78 (34%), Gaps = 25/78 (32%)
Query: 85 EEIEESWKEETQQLVEMVNRLQEENKKLSKRLEHEGS----SPMKSQQ-------LSPEI 133
E+ + W E + M +R+ +L L+ EGS + Q L PE
Sbjct: 305 PELRKEWLVE---VKGMADRIISMRTQLVSNLKKEGSSHNWQHITDQIGMFCFTGLKPE- 360
Query: 134 DISVLQKLRGQVDSLRDQ 151
QV+ L +
Sbjct: 361 ----------QVERLTKE 368
>1g8k_A Arsenite oxidase; molybdopterin, [3Fe-4S] cluster, [2Fe-2S] rieske,
oxidoreductase; HET: MGD; 1.64A {Alcaligenes faecalis}
SCOP: b.52.2.2 c.81.1.1 PDB: 1g8j_A*
Length = 825
Score = 30.4 bits (69), Expect = 1.3
Identities = 5/19 (26%), Positives = 9/19 (47%)
Query: 19 SEIGKEFEKIIDQYGPDAV 37
+ +K +D+ GP V
Sbjct: 141 ALYAGLIKKTLDKDGPQGV 159
>2q7w_A Aspartate aminotransferase; mechanism-based inhibitor, PLP, sadta,
PH dependence; HET: KST PSZ PMP GOL; 1.40A {Escherichia
coli} SCOP: c.67.1.1 PDB: 2qa3_A* 2qb2_A* 2qb3_A*
2qbt_A* 3qn6_A* 3pa9_A* 1aaw_A* 1amq_A* 1ams_A* 1arg_A*
1amr_A* 1art_A* 1asa_A* 1asd_A* 1ase_A* 1asl_A* 1asm_A*
1asn_A* 1c9c_A* 1cq6_A* ...
Length = 396
Score = 29.9 bits (68), Expect = 1.3
Identities = 16/78 (20%), Positives = 30/78 (38%), Gaps = 25/78 (32%)
Query: 85 EEIEESWKEETQQLVEMVNRLQEENKKLSKRLEHEGS----SPMKSQQ-------LSPEI 133
+ + W++E L +M R+Q + L+ +G+ S + Q L+ E
Sbjct: 301 DALRAIWEQE---LTDMRQRIQRMRQLFVNTLQEKGANRDFSFIIKQNGMFSFSGLTKE- 356
Query: 134 DISVLQKLRGQVDSLRDQ 151
QV LR++
Sbjct: 357 ----------QVLRLREE 364
>1ajs_A Aspartate aminotransferase; PIG, in the presence of ligand
2-methylaspartate; HET: LLP PLA; 1.60A {Sus scrofa}
SCOP: c.67.1.1 PDB: 1ajr_A* 3ii0_A* 1aat_A 2cst_A*
Length = 412
Score = 29.9 bits (68), Expect = 1.3
Identities = 15/78 (19%), Positives = 27/78 (34%), Gaps = 25/78 (32%)
Query: 85 EEIEESWKEETQQLVEMVNRLQEENKKLSKRLEHEGS----SPMKSQQ-------LSPEI 133
E+ W + M +R+ +L RLE + + + Q L+P+
Sbjct: 313 PELFHEWTGN---VKTMADRILSMRSELRARLEALKTPGTWNHITDQIGMFSFTGLNPK- 368
Query: 134 DISVLQKLRGQVDSLRDQ 151
QV+ L +Q
Sbjct: 369 ----------QVEYLINQ 376
>2kho_A Heat shock protein 70; molecular chaperone, HSP70, peptide binding,
protein folding, acetylation, ATP-binding, cell inner
membrane; NMR {Escherichia coli}
Length = 605
Score = 30.3 bits (69), Expect = 1.4
Identities = 10/54 (18%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Query: 64 KLQELGDHISKLEHEKLEREVEEIEESWK-EETQQLVEMVNRLQEENKKLSKRL 116
+++E GD + + +E + +E + K E+ + + L + ++KL +
Sbjct: 549 QVEEAGDKLPADDKTAIESALTALETALKGEDKAAIEAKMQELAQVSQKLMEIA 602
>1ti6_A Pyrogallol hydroxytransferase large subunit; molybdenum binding
enzyme, MGD-cofactors, DMSO-reductase family,
4Fe-4S-cluster; HET: MGD BTT; 2.00A {Pelobacter
acidigallici} SCOP: b.52.2.2 c.81.1.1 PDB: 1ti2_A*
1ti4_A* 1vld_M* 1vle_M* 1vlf_M*
Length = 875
Score = 30.3 bits (68), Expect = 1.4
Identities = 6/18 (33%), Positives = 9/18 (50%)
Query: 20 EIGKEFEKIIDQYGPDAV 37
+ E +I YGP A+
Sbjct: 120 IVVAEINRIKHAYGPSAI 137
>3fsl_A Aromatic-amino-acid aminotransferase; tyrosine aminotransferase,
pyridoxal phosphate, internal ALD schiff base,
amino-acid biosynthesis; HET: PLR; 2.35A {Escherichia
coli k-12} PDB: 3tat_A*
Length = 397
Score = 29.9 bits (68), Expect = 1.4
Identities = 19/78 (24%), Positives = 31/78 (39%), Gaps = 25/78 (32%)
Query: 85 EEIEESWKEETQQLVEMVNRLQEENKKLSKRLEHEGS----SPMKSQQ-------LSPEI 133
E ++ SW +E + EM R+ ++L K L E + +Q+ LS
Sbjct: 302 EALKASWLKE---VEEMRTRILAMRQELVKVLSTEMPERNFDYLLNQRGMFSYTGLSAA- 357
Query: 134 DISVLQKLRGQVDSLRDQ 151
QVD LR++
Sbjct: 358 ----------QVDRLREE 365
>1tmo_A TMAO reductase, trimethylamine N-oxide reductase; oxidoreductase,
oxotransferase, molybdoenzyme, MO-cofactor, molybdenum;
HET: 2MD; 2.50A {Shewanella massilia} SCOP: b.52.2.2
c.81.1.1
Length = 829
Score = 30.2 bits (68), Expect = 1.5
Identities = 4/18 (22%), Positives = 8/18 (44%)
Query: 20 EIGKEFEKIIDQYGPDAV 37
+++ QYGP +
Sbjct: 125 LFKHSLDEVQTQYGPSGL 142
>2xs1_A Programmed cell death 6-interacting protein; protein
transport-viral protein complex, cell cycle; 2.30A {Homo
sapiens} PDB: 2xs8_A 2oev_A 2r05_A 2r02_A 2r03_A 2oex_A
2ojq_A
Length = 704
Score = 29.9 bits (66), Expect = 1.6
Identities = 33/283 (11%), Positives = 88/283 (31%), Gaps = 7/283 (2%)
Query: 56 SKNERENTKLQELGDHISKLEHEKLEREVEEIEESWKEETQQLVEMVNRLQEENKKLSK- 114
S + + L + I + + +++ ++E+ E + + L E + L EE +
Sbjct: 415 SGDTVPQSILTKSRSVIEQGGIQTVDQLIKELPELLQRNREILDESLRLLDEEEATDNDL 474
Query: 115 RLEHEGSSPMKSQQLSPEIDISVLQKLRGQVDSLRDQMRLKEKELGYRNSDVDNSDIPDL 174
R + + + + R +D ++ + P+
Sbjct: 475 RAKFKERWQRTPSNELYKPLRAEGTNFRTVLDKAVQADGQVKECYQSHRDTIVLLCKPEP 534
Query: 175 SNKAVYDLDDPNRPRFTTAELKEILHDRNTLKTRLNELEEERQCFKMVNRLQEENKKLSK 234
A +P + T + E+++ +L + L+E+++ER+ + + +
Sbjct: 535 ELNAAIPSANPAK----TMQGSEVVNVLKSLLSNLDEVKKEREGLENDLKSVNFDMTSKF 590
Query: 235 RLEHEGSSPMKSQQLSPEIDISALQKLRGQVDSLRDQMRLKEKELGYRNSDVDNLKRQID 294
+ + LS L +V + K + + + +K+ +
Sbjct: 591 LTALAQDGVINEEALSVTELDRVYGGLTTKVQESLKKQEGLLKNIQVSHQEFSKMKQSNN 650
Query: 295 RLTSTVRELRRKQRLSQV--QVRGLIDERADFLAALQDHQREV 335
L+ ++ + E F L +
Sbjct: 651 EANLREEVLKNLATAYDNFVELVANLKEGTKFYNELTEILVRF 693
>4f4e_A Aromatic-amino-acid aminotransferase; ssgcid, structural genomics,
seattle structural genomics CEN infectious disease; HET:
LLP; 1.80A {Burkholderia pseudomallei} PDB: 4eff_A*
Length = 420
Score = 29.9 bits (68), Expect = 1.7
Identities = 20/78 (25%), Positives = 33/78 (42%), Gaps = 25/78 (32%)
Query: 85 EEIEESWKEETQQLVEMVNRLQEENKKLSKRLEHEGS----SPMKSQQ-------LSPEI 133
E+ SW +E L EM +R++ L +RL+ G S + +Q+ L+
Sbjct: 324 PELRASWVQE---LGEMRDRIRAMRNGLVERLKAAGIERDFSFINAQRGMFSYSGLTSA- 379
Query: 134 DISVLQKLRGQVDSLRDQ 151
QVD LR++
Sbjct: 380 ----------QVDRLREE 387
>2nap_A Protein (periplasmic nitrate reductase); nitrogenous acceptor,
dissimilatory nitrate reductase; HET: MGD MES; 1.90A
{Desulfovibrio desulfuricans} SCOP: b.52.2.2 c.81.1.1
PDB: 2jim_A* 2jir_A* 2jip_A* 2v45_A* 2v3v_A* 2jiq_A*
2jio_A*
Length = 723
Score = 29.9 bits (68), Expect = 1.7
Identities = 7/19 (36%), Positives = 10/19 (52%)
Query: 19 SEIGKEFEKIIDQYGPDAV 37
+ F ID YGP++V
Sbjct: 86 DLMASRFRSSIDMYGPNSV 104
>2ay1_A Aroat, aromatic amino acid aminotransferase; HET: PLP AHC; 2.20A
{Paracoccus denitrificans} SCOP: c.67.1.1 PDB: 1ay5_A*
1ay4_A* 1ay8_A* 2ay2_A* 2ay3_A* 2ay4_A* 2ay5_A* 2ay6_A*
2ay7_A* 2ay8_A* 2ay9_A*
Length = 394
Score = 29.5 bits (67), Expect = 1.8
Identities = 10/78 (12%), Positives = 24/78 (30%), Gaps = 25/78 (32%)
Query: 85 EEIEESWKEETQQLVEMVNRLQEENKKLSKRLEHEGS----SPMKSQQ-------LSPEI 133
E+ W E L + + + ++L+ L + + +PE
Sbjct: 298 PELRADWMAE---LEAVRSGMLRLREQLAGELRDLSGSDRFGFVAEHRGMFSRLGATPE- 353
Query: 134 DISVLQKLRGQVDSLRDQ 151
QV ++++
Sbjct: 354 ----------QVKRIKEE 361
>1eu1_A Dimethyl sulfoxide reductase; molybdenum, molybdenum cofactor,
DMSO, molybdopte oxidoreductase; HET: GLC MGD EPE; 1.30A
{Rhodobacter sphaeroides} SCOP: b.52.2.2 c.81.1.1 PDB:
4dmr_A* 1dmr_A* 1e5v_A* 1h5n_A* 2dmr_A* 3dmr_A* 1e61_A*
1e60_A* 1e18_A* 1dms_A*
Length = 780
Score = 29.3 bits (66), Expect = 2.3
Identities = 4/18 (22%), Positives = 10/18 (55%)
Query: 20 EIGKEFEKIIDQYGPDAV 37
+ +E +++ + YGP
Sbjct: 92 LVARELKRVQESYGPTGT 109
>2iv2_X Formate dehydrogenase H; oxidoreductase, 4Fe-4S, anaerobic,
complete proteome, direct protein sequencing, Fe4S4,
iron, iron sulfur cluster; HET: 2MD MGD; 2.27A
{Escherichia coli} SCOP: b.52.2.2 c.81.1.1 PDB: 1fdi_A*
1fdo_A* 1aa6_A*
Length = 715
Score = 29.5 bits (67), Expect = 2.4
Identities = 6/19 (31%), Positives = 12/19 (63%)
Query: 19 SEIGKEFEKIIDQYGPDAV 37
+ + + I ++YGPDA+
Sbjct: 85 NYVAERLSAIKEKYGPDAI 103
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ,
heterodimer, transcription/DNA complex; 1.80A {Homo
sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Length = 83
Score = 27.3 bits (61), Expect = 2.5
Identities = 11/63 (17%), Positives = 26/63 (41%), Gaps = 7/63 (11%)
Query: 62 NTKLQELGDHISKLEHEK------LEREVEEIEESWKEETQQLVEMVNRLQEENKKLSKR 115
L D + L+ EK L++ E I+ + + + ++ L+ +N L ++
Sbjct: 18 KDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYM-RRKNHTHQQDIDDLKRQNALLEQQ 76
Query: 116 LEH 118
+
Sbjct: 77 VRA 79
>3meb_A Aspartate aminotransferase; pyridoxal PHOS transferase, structural
genomics, seattle structural genomi for infectious
disease, ssgcid; HET: PLP; 1.90A {Giardia lamblia}
Length = 448
Score = 29.2 bits (66), Expect = 2.5
Identities = 10/77 (12%), Positives = 23/77 (29%), Gaps = 18/77 (23%)
Query: 85 EEIEESWKEETQQLVEMVNRLQEENKKLSKRLEHEGSSPMKSQQLSPEIDISVLQKLRG- 143
+ + + + + + EM R+ L L + S+ + G
Sbjct: 340 KRLLQMFYDN---VKEMSARIHRMRSLLHASLAKRKTPGPGSKG-----TWDHILTAIGM 391
Query: 144 ---------QVDSLRDQ 151
VD L+++
Sbjct: 392 FTFTGLTPEHVDYLKEK 408
>3bfj_A 1,3-propanediol oxidoreductase; opportunistic pathogens, decamer,
structural genomics,struct proteomics in europe, spine;
2.70A {Klebsiella pneumoniae}
Length = 387
Score = 28.7 bits (65), Expect = 3.2
Identities = 13/65 (20%), Positives = 27/65 (41%), Gaps = 8/65 (12%)
Query: 139 QKLRGQVDSLRDQMRLKE--KELGYRNSDVDNSDIPDLSNKAVYDLDDPNRPRFTT-AEL 195
+K + L + + + ++LG V +D P ++ A+ D + + PR E+
Sbjct: 325 EKAIAAITRLSMDIGIPQHLRDLG-----VKETDFPYMAEMALKDGNAFSNPRKGNEQEI 379
Query: 196 KEILH 200
I
Sbjct: 380 AAIFR 384
>2a6h_D DNA-directed RNA polymerase beta' chain; RNA polymerase holoenzyme,
streptolydigin, antibiotic, transcription regulation;
HET: STD; 2.40A {Thermus thermophilus} SCOP: e.29.1.2
PDB: 1smy_D* 1zyr_D* 1iw7_D* 2a69_D* 2a6e_D 2a68_D*
2be5_D* 2cw0_D 2o5i_D 2o5j_D* 2ppb_D* 3aoh_D* 3aoi_D*
3dxj_D* 3eql_D* 1ynj_D* 1l9z_D 1l9u_D* 1ynn_D* 2auj_D
Length = 1524
Score = 29.0 bits (65), Expect = 3.3
Identities = 36/322 (11%), Positives = 94/322 (29%), Gaps = 32/322 (9%)
Query: 65 LQELGDHISKLEHEKLEREVEEIEESWKEETQQLVEMVNRLQEENKKLSKRLEHEGSSPM 124
L + G+ + E V ++ + V + ++ RL +
Sbjct: 178 LVKDGEEV-VKGQELAPGVVSRLDG---VALYRFPRRVRVEYVKKERAGLRLPLAAW--V 231
Query: 125 KSQQLSPE---IDISVLQKLRGQVDSLRDQMRLKEKELGYRNS---DVDNSDIPDLSNKA 178
+ + P ++ R + + + + L+E V +P
Sbjct: 232 EKEAYKPGEILAELPEPYLFRAEEEGVVELKELEEGAFLVLRREDEPVATYFLPVGMTPL 291
Query: 179 VYDLDDPNRPRFTTAELKEILHDRNTLKTRLNELEEERQCFKMVNRLQEENKKLSKR--- 235
V + + + + R ++ EE + + E K +
Sbjct: 292 VVHGEIVEKGQPLAEAKGLLRMPRQVRAAQVEAEEEGETVYLTLFLEWTEPKDYRVQPHM 351
Query: 236 --LEHEGSSPMKSQQLSPEID----ISALQKLRGQVDSLRDQMRLKEKELGYRNSDVDNL 289
+ EG+ ++ ID + A + + + +K + + + +
Sbjct: 352 NVVVPEGARVEAGDKIVAAIDPEEEVIAEAEGVVHLHEPASILVVKARVYPFEDDVEVST 411
Query: 290 KRQIDRLTSTVRELRRKQRLSQVQVRGLIDERADFLAALQDHQRE-------VAALKQQL 342
++ + S V R +D + + ++ + + + L ++L
Sbjct: 412 GDRVAPGDVL---ADGGKVKSDVYGRVEVDLVRNVVRVVESYDIDARMGAEAIQQLLKEL 468
Query: 343 GLAEKENEDLYNSQETTSEEER 364
L E ++L + S R
Sbjct: 469 DL-EALEKELLEEMKHPSRARR 489
>3ml1_A NAPA, periplasmic nitrate reductase; heterodimer, oxidoreductase;
HET: MGD HEC; 1.60A {Ralstonia eutropha} PDB: 3o5a_A*
1ogy_A* 2nya_A*
Length = 802
Score = 28.9 bits (65), Expect = 3.3
Identities = 6/19 (31%), Positives = 14/19 (73%)
Query: 19 SEIGKEFEKIIDQYGPDAV 37
E+ ++F++++ + GP AV
Sbjct: 98 DEMERQFKRVLKEKGPTAV 116
>3u06_A Protein claret segregational; motor domain, stalk rotation, power
stroke, kinesin-14, MICR binding, NCD, transport,
molecular motor; HET: ADP GOL; 2.35A {Drosophila
melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Length = 412
Score = 28.8 bits (65), Expect = 3.4
Identities = 10/52 (19%), Positives = 20/52 (38%)
Query: 303 LRRKQRLSQVQVRGLIDERADFLAALQDHQREVAALKQQLGLAEKENEDLYN 354
+ +V L + L + E+ K+QL + E ++L+N
Sbjct: 1 MGSMHAALSTEVVHLRQRTEELLRCNEQQAAELETCKEQLFQSNMERKELHN 52
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP
hydrolysis, GDP, GMP, dynamin related, large GTPase
family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens}
SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A*
2bc9_A* 2d4h_A*
Length = 592
Score = 28.8 bits (63), Expect = 3.8
Identities = 13/64 (20%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
Query: 49 EHLECLASKNERENTKLQELGDHISKLEHEKLEREVEEIEESWKEETQQLVEMVNRLQEE 108
EHL+ L K E + +L + + KL+ + + ++E +++E++ + + LQ +
Sbjct: 526 EHLKQLTEKMENDRVQLLK---EQERTLALKLQEQEQLLKEGFQKESRIMKNEIQDLQTK 582
Query: 109 NKKL 112
++
Sbjct: 583 MRRR 586
>2nrk_A Hypothetical protein GRPB; UPF0157, PFAM04229, glutamate-rich
protein, enterococcus FAE PSI-2, protein structure
initiative; 1.65A {Enterococcus faecalis} SCOP:
d.218.1.14
Length = 173
Score = 28.1 bits (62), Expect = 3.9
Identities = 19/79 (24%), Positives = 40/79 (50%), Gaps = 7/79 (8%)
Query: 83 EVEEIEESWKEETQQLVEMVNRLQEENKKLSKRLEHEGSSPMKSQQLSPEIDISVLQKLR 142
V E + +W E+ ++ + L++ K+ ++EH GS+ + + P ID V+ +
Sbjct: 7 IVTEYQPAWVEQFEEEAQ---ALKQILKENCLKVEHIGSTSVPNLAAKPIIDFLVIVEEI 63
Query: 143 GQVDSLRDQMRLKEKELGY 161
+VD L+ + + +GY
Sbjct: 64 EKVDLLQWEF----ERIGY 78
>1y1u_A Signal transducer and activator of transcription; STAT,
DNA-binding, SH2 domain, transcription REGU signaling
protein; 3.21A {Mus musculus}
Length = 585
Score = 28.6 bits (63), Expect = 4.1
Identities = 12/88 (13%), Positives = 32/88 (36%), Gaps = 6/88 (6%)
Query: 78 EKLEREVEEIEESWKEETQQLVEMVNRLQEENKKLSKRLEHEGSSPMKSQQLSPEIDI-- 135
E+L ++ E K+ Q + + QE + ++ + +P + +
Sbjct: 22 EELRLITQDTENELKKLQQTQEYFIIQYQESLRIQAQFAQLGQLNPQERMSRETALQQKQ 81
Query: 136 ----SVLQKLRGQVDSLRDQMRLKEKEL 159
+ LQ+ + R ++ K ++
Sbjct: 82 VSLETWLQREAQTLQQYRVELAEKHQKT 109
>1o2d_A Alcohol dehydrogenase, iron-containing; TM0920, structural
genomics, JCSG, PSI, protein structure initiative; HET:
MSE NAP TRS; 1.30A {Thermotoga maritima} SCOP: e.22.1.2
PDB: 1vhd_A*
Length = 371
Score = 28.3 bits (64), Expect = 4.5
Identities = 7/45 (15%), Positives = 16/45 (35%), Gaps = 6/45 (13%)
Query: 157 KELGYRNSDVDNSDIPDLSNKAVYDLDDPNRPR-FTTAELKEILH 200
+++ V + ++ K N P FT +++ I
Sbjct: 327 EKVA-----VSSEELEKWVEKGSRAKHLKNTPGTFTPEKIRNIYR 366
>1lw3_A Myotubularin-related protein 2; protein-phosphate complex,
hydrolase; 2.30A {Homo sapiens} SCOP: b.55.1.8 c.45.1.3
PDB: 1m7r_A
Length = 657
Score = 28.4 bits (62), Expect = 4.9
Identities = 11/49 (22%), Positives = 19/49 (38%), Gaps = 2/49 (4%)
Query: 83 EVEEIEESWKEETQQLVEMVNRLQEENKKLSKRLEHEGSSPMKSQQLSP 131
+ + + +L + V LQ E S SSP +Q ++P
Sbjct: 595 PIHNRYKELLAKRAELQKKVEELQREISNRSTSSSERASSP--AQCVTP 641
>2zt5_A Glycyl-tRNA synthetase; ligase, AP4A, glycine, ATP, Gly-AMP,
aminoacyl-tRNA synthetase, ATP-binding,
charcot-marie-tooth disease, disease mutation; HET: B4P;
2.50A {Homo sapiens} PDB: 2pme_A* 2zt6_A* 2zt7_A*
2zt8_A* 2zxf_A* 2pmf_A 2q5h_A 2q5i_A
Length = 693
Score = 28.1 bits (62), Expect = 5.5
Identities = 15/77 (19%), Positives = 27/77 (35%), Gaps = 5/77 (6%)
Query: 286 VDNLKRQIDRLTSTVRELRRKQRLSQVQVRGLIDERADFLAALQDHQREVAALKQQLGLA 345
+D T+T+R+ R S Q+R I E + L + A ++ + L
Sbjct: 618 IDFDTVNKTPHTATLRD-----RDSMRQIRAEISELPSIVQDLANGNITWADVEARYPLF 672
Query: 346 EKENEDLYNSQETTSEE 362
E + + E
Sbjct: 673 EGQETGKKETIEELEHH 689
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch
recognition, mismatched unpaired DNA binding protein-DNA
complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B*
3thy_B* 3thz_B*
Length = 918
Score = 28.4 bits (64), Expect = 5.8
Identities = 6/27 (22%), Positives = 10/27 (37%)
Query: 189 RFTTAELKEILHDRNTLKTRLNELEEE 215
RF + + E N L+ +L
Sbjct: 563 RFHSPFIVENYRHLNQLREQLVLDCSA 589
>3t18_A Aminotransferase class I and II; PSI-biology, MCSG, midwest center
for structural genomics, P 5'-phosphate binding; HET:
PLP; 2.86A {Anaerococcus prevotii}
Length = 413
Score = 28.0 bits (63), Expect = 6.0
Identities = 9/74 (12%), Positives = 21/74 (28%), Gaps = 19/74 (25%)
Query: 85 EEIEESWKEETQQLVEMVNRLQEENKKLSKRLEHEGSSPMKSQQ-------LSPEIDISV 137
E ++ +++E LV++ N L+ + + + D
Sbjct: 315 AENKKIYEQE---LVDLRNMLKSRADVFVTAAKENKLTMIPYFGGFFTFIPTDKAFD--- 368
Query: 138 LQKLRGQVDSLRDQ 151
V L +
Sbjct: 369 ------IVKDLEKE 376
>3d5k_A OPRM, outer membrane protein OPRM; channel, beta-alpha-barrel,
antibiotic RES lipoprotein, palmitate, transmemb
transport; 2.40A {Pseudomonas aeruginosa} PDB: 1wp1_A
Length = 474
Score = 28.1 bits (63), Expect = 6.5
Identities = 19/96 (19%), Positives = 34/96 (35%), Gaps = 19/96 (19%)
Query: 260 KLRGQVDSLRDQMRLKEKELGYRNS------DVDN-------LKRQIDRLTSTVRELRRK 306
LR +D + Q Y + +V + Q+ V+
Sbjct: 339 SLRASLDYAKIQ--KDINVAQYEKAIQTAFQEVADGLAARGTFTEQLQAQRDLVKASDEY 396
Query: 307 QRLSQVQVRGLIDERADFLAALQDHQREVAALKQQL 342
+L+ + R +D ++L L D QR + +QQL
Sbjct: 397 YQLADKRYRTGVD---NYLTLL-DAQRSLFTAQQQL 428
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase,
tramp, exosome, DEAD, nucleotide-binding; HET: ADP;
2.90A {Saccharomyces cerevisiae}
Length = 1010
Score = 27.8 bits (61), Expect = 7.8
Identities = 27/259 (10%), Positives = 78/259 (30%), Gaps = 8/259 (3%)
Query: 70 DHISKLEHEKLEREVEEIEESWKEETQQLVEMVNRLQEENKKLSKRLEHEGSSPMKSQQL 129
D + E+ ++E+ ++ E ++ ++ LQ +
Sbjct: 576 DEENVKEYHEIEQAIKGYREDVRQVVTHPANALSFLQPGRLVEISVNGKDNYGWGAVVDF 635
Query: 130 SPEIDISVLQKLRGQVDSLRDQMRLKEKELGYRNSDVDNSDIPDLSNKAVYDLDDPNRPR 189
+ I+ + +S + + + + + + + + +
Sbjct: 636 AKRINKRNPSAVYTDHESYIVNVVVNTMYIDSPVNLLKPFNPTLPEGIRPAEEGEKSICA 695
Query: 190 FTTAELKEILHDRNTLKTRLNELEEERQCFKMVNRLQEENKKLSKRL-EHEGSSPMKSQQ 248
L I N ++ Q + L+E N++ + + MK +
Sbjct: 696 VIPITLDSIKSIGNLRLYMPKDIRASGQKETVGKSLREVNRRFPDGIPVLDPVKNMKIED 755
Query: 249 LSPEIDISALQKLRGQVDSL-------RDQMRLKEKELGYRNSDVDNLKRQIDRLTSTVR 301
+ + L ++ S +++ K + D+ LKR+I + ++
Sbjct: 756 EDFLKLMKKIDVLNTKLSSNPLTNSMRLEELYGKYSRKHDLHEDMKQLKRKISESQAVIQ 815
Query: 302 ELRRKQRLSQVQVRGLIDE 320
++R ++ G
Sbjct: 816 LDDLRRRKRVLRRLGFCTP 834
>3hd7_A Vesicle-associated membrane protein 2; membrane protein,
coiled-coil, 4-helical bundle, cell juncti cytoplasmic
vesicle, membrane, phosphoprotein; HET: GGG; 3.40A
{Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Length = 91
Score = 26.0 bits (57), Expect = 7.9
Identities = 15/68 (22%), Positives = 33/68 (48%), Gaps = 7/68 (10%)
Query: 258 LQKLRGQVDSLRDQMRLKEKELGYRNSDVDNLKRQIDRLTS-------TVRELRRKQRLS 310
LQ+ + QVD + D MR+ ++ R+ + L + D L + + +L+RK
Sbjct: 7 LQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKYWWK 66
Query: 311 QVQVRGLI 318
+++ ++
Sbjct: 67 NLKMMIIL 74
>4e81_A Chaperone protein DNAK; chaperone; 1.90A {Escherichia coli} PDB:
3dpp_A* 3dpq_A* 3qnj_A 3dpo_A 1dkz_A 1dky_A 1dkx_A
1bpr_A 2bpr_A 1dg4_A
Length = 219
Score = 27.2 bits (61), Expect = 8.9
Identities = 10/53 (18%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Query: 65 LQELGDHISKLEHEKLEREVEEIEESWK-EETQQLVEMVNRLQEENKKLSKRL 116
++E GD + + +E + +E + K E+ + + L + ++KL +
Sbjct: 162 VEEAGDKLPADDKTAIESALTALETALKGEDKAAIEAKMQELAQVSQKLMEIA 214
>3cer_A Possible exopolyphosphatase-like protein; NESG, BLR13, Q8G5J2,
X-RAY, structure, structural genomics, PSI-2; 2.40A
{Bifidobacterium longum NCC2705}
Length = 343
Score = 27.2 bits (61), Expect = 9.6
Identities = 7/48 (14%), Positives = 18/48 (37%)
Query: 280 GYRNSDVDNLKRQIDRLTSTVRELRRKQRLSQVQVRGLIDERADFLAA 327
Y ++ VD + + + + R R + + + + R D +
Sbjct: 247 EYDHTVVDGHRLSFEDAYAVDDKFLRMTRAERREYKTIHPGRIDVVGG 294
>2r6a_C DNAG primase, helicase binding domain, replicative helicase;
replication, DNAB; 2.90A {Geobacillus
stearothermophilus} PDB: 2r6c_G 1z8s_A*
Length = 143
Score = 26.7 bits (59), Expect = 9.9
Identities = 15/75 (20%), Positives = 29/75 (38%), Gaps = 7/75 (9%)
Query: 43 KVIVALEHLECLASKNERENTKLQELGDHISKLEHEKLEREVEEIEESWKE-ETQQLVEM 101
+ L L +E QEL D+I + + ++ E+ E E ++
Sbjct: 72 PLASELSLLLIADDVSE------QELEDYIRHVLNRPKWLMLKVKEQEKTEAERRKDFLT 125
Query: 102 VNRLQEENKKLSKRL 116
R+ +E ++ K L
Sbjct: 126 AARIAKEMIEMKKML 140
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.310 0.129 0.344
Gapped
Lambda K H
0.267 0.0791 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,742,049
Number of extensions: 351280
Number of successful extensions: 1477
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1362
Number of HSP's successfully gapped: 300
Length of query: 389
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 294
Effective length of database: 4,049,298
Effective search space: 1190493612
Effective search space used: 1190493612
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 58 (26.0 bits)