RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy10418
(389 letters)
>d1bdga1 c.55.1.3 (A:13-222) Hexokinase {Blood fluke (Schistosoma
mansoni) [TaxId: 6183]}
Length = 208
Score = 31.7 bits (72), Expect = 0.10
Identities = 11/48 (22%), Positives = 20/48 (41%), Gaps = 1/48 (2%)
Query: 78 EKLEREVEEIEESWKEETQQLVEMVNRLQEE-NKKLSKRLEHEGSSPM 124
++L +V EI + + E+ +R+ E L K + S M
Sbjct: 4 QQLFEKVVEILKPFDLSVVDYEEICDRMGESMRLGLQKSTNEKSSIKM 51
>d1czan3 c.55.1.3 (N:466-670) Mammalian type I hexokinase {Human
(Homo sapiens) [TaxId: 9606]}
Length = 205
Score = 31.4 bits (71), Expect = 0.13
Identities = 10/44 (22%), Positives = 19/44 (43%), Gaps = 1/44 (2%)
Query: 82 REVEEIEESWKEETQQLVEMVNRLQEE-NKKLSKRLEHEGSSPM 124
R++EE + L+E+ R++ E L K+ + M
Sbjct: 3 RQIEETLAHFHLTKDMLLEVKKRMRAEMELGLRKQTHNNAVVKM 46
>d1rrma_ e.22.1.2 (A:) Lactaldehyde reductase FucO {Escherichia coli
[TaxId: 562]}
Length = 385
Score = 31.5 bits (70), Expect = 0.19
Identities = 15/66 (22%), Positives = 27/66 (40%), Gaps = 8/66 (12%)
Query: 139 QKLRGQVDSLRDQMRLKE--KELGYRNSDVDNSDIPDLSNKAVYDLDDPNRPR-FTTAEL 195
V +L + + +++G V DIP L+ A+ D+ PR T ++
Sbjct: 320 NAAVEAVFALNRDVGIPPHLRDVG-----VRKEDIPALAQAALDDVCTGGNPREATLEDI 374
Query: 196 KEILHD 201
E+ H
Sbjct: 375 VELYHT 380
>d1vlfm2 c.81.1.1 (M:1-728) Transhydroxylase alpha subunit, AthL
{Pelobacter acidigallici [TaxId: 35816]}
Length = 728
Score = 30.8 bits (68), Expect = 0.31
Identities = 6/19 (31%), Positives = 9/19 (47%)
Query: 19 SEIGKEFEKIIDQYGPDAV 37
+ E +I YGP A+
Sbjct: 119 DIVVAEINRIKHAYGPSAI 137
>d1ig8a1 c.55.1.3 (A:18-224) Hexokinase {Baker's yeast
(Saccharomyces cerevisiae), pII [TaxId: 4932]}
Length = 207
Score = 30.2 bits (68), Expect = 0.33
Identities = 10/45 (22%), Positives = 21/45 (46%), Gaps = 3/45 (6%)
Query: 78 EKLEREVEEIEESWKEETQQLVEMVNRLQEENKKLSKRLEHEGSS 122
++L +++E E+ + T+ L + E L K L +G +
Sbjct: 4 KELMQQIENFEKIFTVPTETLQAVTKHFISE---LEKGLSKKGGN 45
>d1tmoa2 c.81.1.1 (A:5-631) Trimethylamine N-oxide reductase
{Shewanella massilia [TaxId: 76854]}
Length = 627
Score = 30.4 bits (67), Expect = 0.40
Identities = 4/19 (21%), Positives = 9/19 (47%)
Query: 19 SEIGKEFEKIIDQYGPDAV 37
+ +++ QYGP +
Sbjct: 89 TLFKHSLDEVQTQYGPSGL 107
>d1eu1a2 c.81.1.1 (A:4-625) Dimethylsulfoxide reductase (DMSO
reductase) {Rhodobacter sphaeroides [TaxId: 1063]}
Length = 622
Score = 30.0 bits (66), Expect = 0.47
Identities = 4/19 (21%), Positives = 10/19 (52%)
Query: 19 SEIGKEFEKIIDQYGPDAV 37
+ +E +++ + YGP
Sbjct: 88 DLVARELKRVQESYGPTGT 106
>d1vlja_ e.22.1.2 (A:) NADH-dependent butanol dehydrogenase A
(TM0820) {Thermotoga maritima [TaxId: 2336]}
Length = 398
Score = 29.6 bits (65), Expect = 0.64
Identities = 10/77 (12%), Positives = 31/77 (40%), Gaps = 16/77 (20%)
Query: 132 EIDISVLQKLRGQVDSLRDQMRLKEKELGYRNSDVDNSDIPDLSNKAVYDLDDPNRPRFT 191
E+ + ++ + + + + LK+ G + DI + + + ++ +P+
Sbjct: 324 ELILKGIEAFKNWLKKVGAPVSLKD--AG-----IPEEDIDKIVDNVMLLVEKNLKPKGA 376
Query: 192 TA---------ELKEIL 199
+ +++EIL
Sbjct: 377 SLGRIMVLEREDVREIL 393
>d1o2da_ e.22.1.2 (A:) Alcohol dehydrogenase TM0920 {Thermotoga
maritima [TaxId: 2336]}
Length = 359
Score = 29.2 bits (64), Expect = 0.84
Identities = 12/47 (25%), Positives = 19/47 (40%), Gaps = 2/47 (4%)
Query: 157 KELG-YRNSDVDNSDIPDLSNKAVYDLDDPNRPR-FTTAELKEILHD 201
KELG Y V + ++ K N P FT +++ I +
Sbjct: 309 KELGLYEKVAVSSEELEKWVEKGSRAKHLKNTPGTFTPEKIRNIYRE 355
>d2jioa2 c.81.1.1 (A:4-600) Periplasmic nitrate reductase alpha
chain {Desulfovibrio desulfuricans [TaxId: 876]}
Length = 597
Score = 29.3 bits (64), Expect = 0.88
Identities = 7/19 (36%), Positives = 10/19 (52%)
Query: 19 SEIGKEFEKIIDQYGPDAV 37
+ F ID YGP++V
Sbjct: 83 DLMASRFRSSIDMYGPNSV 101
>d1ogya2 c.81.1.1 (A:12-681) Periplasmic nitrate reductase alpha
chain {Rhodobacter sphaeroides [TaxId: 1063]}
Length = 670
Score = 29.2 bits (64), Expect = 0.97
Identities = 3/19 (15%), Positives = 10/19 (52%)
Query: 19 SEIGKEFEKIIDQYGPDAV 37
+ + + ++ + P+AV
Sbjct: 87 DVMAAQAKLVLKEKAPEAV 105
>d1y5ia2 c.81.1.1 (A:1-1074) Respiratory nitrate reductase 1 alpha
chain {Escherichia coli [TaxId: 562]}
Length = 1074
Score = 29.0 bits (64), Expect = 1.1
Identities = 7/18 (38%), Positives = 7/18 (38%)
Query: 20 EIGKEFEKIIDQYGPDAV 37
I I YGPD V
Sbjct: 168 LIAASNVYTIKNYGPDRV 185
>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G
protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}
Length = 340
Score = 28.5 bits (62), Expect = 1.3
Identities = 13/61 (21%), Positives = 29/61 (47%), Gaps = 5/61 (8%)
Query: 284 SDVDNLKRQIDRLTSTVRELRRK---QRLSQVQVRGLIDERADF--LAALQDHQREVAAL 338
S++D L+++ ++L + +R+ R+ LSQ+ R L+ H ++ A+
Sbjct: 2 SELDQLRQEAEQLKNQIRDARKACADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIYAM 61
Query: 339 K 339
Sbjct: 62 H 62
>d2iv2x2 c.81.1.1 (X:1-564) Formate dehydrogenase H {Escherichia
coli [TaxId: 562]}
Length = 564
Score = 28.4 bits (62), Expect = 1.5
Identities = 6/18 (33%), Positives = 11/18 (61%)
Query: 20 EIGKEFEKIIDQYGPDAV 37
+ + I ++YGPDA+
Sbjct: 86 YVAERLSAIKEKYGPDAI 103
>d1g8ka2 c.81.1.1 (A:4-682) Arsenite oxidase large subunit
{Alcaligenes faecalis [TaxId: 511]}
Length = 679
Score = 28.6 bits (62), Expect = 1.8
Identities = 5/19 (26%), Positives = 9/19 (47%)
Query: 19 SEIGKEFEKIIDQYGPDAV 37
+ +K +D+ GP V
Sbjct: 138 ALYAGLIKKTLDKDGPQGV 156
>d1vp4a_ c.67.1.1 (A:) Putative aminotransferase TM1131 {Thermotoga
maritima [TaxId: 2336]}
Length = 420
Score = 28.2 bits (61), Expect = 1.9
Identities = 7/31 (22%), Positives = 13/31 (41%)
Query: 279 LGYRNSDVDNLKRQIDRLTSTVRELRRKQRL 309
L + + + I RL V E +++ L
Sbjct: 389 LSFCLPPDEKIVEGIKRLREVVLEYGKEKHL 419
>d1tf5a4 c.37.1.19 (A:396-570) Translocation ATPase SecA,
nucleotide-binding domains {Bacillus subtilis [TaxId:
1423]}
Length = 175
Score = 27.5 bits (61), Expect = 2.0
Identities = 10/55 (18%), Positives = 24/55 (43%), Gaps = 2/55 (3%)
Query: 66 QELGDHISKLEHEKLEREVEEIEESWKEETQQLVEMVNRLQEENKKLSKRLEHEG 120
+ D I + K + E++ + + L + E ++ +SK L+++G
Sbjct: 6 DDRPDLIYRTMEGKFKAVAEDVAQRYMTGQPVL--VGTVAVETSELISKLLKNKG 58
>d2nrka1 d.218.1.14 (A:4-170) Hypothetical protein GrpB
{Enterococcus faecalis [TaxId: 1351]}
Length = 167
Score = 27.3 bits (60), Expect = 2.1
Identities = 19/80 (23%), Positives = 39/80 (48%), Gaps = 7/80 (8%)
Query: 84 VEEIEESWKEETQQLVEMVNRLQEENKKLSKRLEHEGSSPMKSQQLSPEIDISVLQKLRG 143
V E + +W E+ ++ + L++ K+ ++EH GS+ + + P ID V+ +
Sbjct: 2 VTEYQPAWVEQFEEEAQ---ALKQILKENCLKVEHIGSTSVPNLAAKPIIDFLVIVEEIE 58
Query: 144 QVDSLRDQMRLKEKELGYRN 163
+VD L+ + +GY
Sbjct: 59 KVDLLQWEFER----IGYEY 74
>d1jq5a_ e.22.1.2 (A:) Glycerol dehydrogenase {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 366
Score = 28.0 bits (61), Expect = 2.4
Identities = 5/56 (8%), Positives = 22/56 (39%), Gaps = 3/56 (5%)
Query: 157 KELGYRNSDVDNSDIPDLSNKAVYDLDDPNRPR-FTTAELKEILHDRNTLKTRLNE 211
+++ +++ + DI ++ A + + + T ++ + + + E
Sbjct: 312 EDIKLKDASRE--DILKVAKAATAEGETIHNAFNVTADDVADAIFAADQYAKAYKE 365
>d1q5na_ a.127.1.1 (A:) 3-carboxy-cis,cis-muconate cycloisomerase
(CMLE) {Acinetobacter calcoaceticus [TaxId: 471]}
Length = 444
Score = 26.6 bits (57), Expect = 6.4
Identities = 12/77 (15%), Positives = 26/77 (33%), Gaps = 9/77 (11%)
Query: 187 RPRFTTAELKEILHDRNTLKTRLNELEEERQCFKMVNRLQEENKKLSKRLEHEGSSPMKS 246
F ++ EI DR + +E E + ++ + + ++ +
Sbjct: 4 ASLFYQRDVTEIFSDRALVSYM---VEAEVALAQAQAQVGVIPQSAATVIQR------AA 54
Query: 247 QQLSPEIDISALQKLRG 263
+ +ID AL G
Sbjct: 55 KTAIDKIDFDALATATG 71
>d2hk6a1 c.92.1.1 (A:2-310) Ferrochelatase {Bacillus subtilis
[TaxId: 1423]}
Length = 309
Score = 26.2 bits (57), Expect = 6.7
Identities = 7/45 (15%), Positives = 17/45 (37%)
Query: 195 LKEILHDRNTLKTRLNELEEERQCFKMVNRLQEENKKLSKRLEHE 239
I R L +L++ + ++ L + ++ + LE
Sbjct: 25 YTHIRRGRKPEPEMLQDLKDRYEAIGGISPLAQITEQQAHNLEQH 69
>d1re5a_ a.127.1.1 (A:) 3-carboxy-cis,cis-muconate cycloisomerase
(CMLE) {Pseudomonas putida, strain KT2440 [TaxId: 303]}
Length = 448
Score = 26.1 bits (56), Expect = 8.4
Identities = 8/21 (38%), Positives = 11/21 (52%)
Query: 189 RFTTAELKEILHDRNTLKTRL 209
FT ++EI DR L+ L
Sbjct: 7 YFTAPAMREIFSDRGRLQGML 27
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.310 0.129 0.344
Gapped
Lambda K H
0.267 0.0658 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,367,757
Number of extensions: 64746
Number of successful extensions: 370
Number of sequences better than 10.0: 1
Number of HSP's gapped: 361
Number of HSP's successfully gapped: 102
Length of query: 389
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 302
Effective length of database: 1,213,086
Effective search space: 366351972
Effective search space used: 366351972
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 54 (24.7 bits)