BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1042
(567 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3FIM|B Chain B, Crystal Structure Of Aryl-Alcohol-Oxidase From Pleurotus
Eryingii
Length = 566
Score = 172 bits (436), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 136/468 (29%), Positives = 229/468 (48%), Gaps = 51/468 (10%)
Query: 118 FDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGI--EEPFFADVPGLAP-LISRSNIDWN 174
FD++++GAG+AG V+A RL+E VL+LEAG+ E A+ P LAP L+ S DWN
Sbjct: 3 FDYVVVGAGNAGNVVAARLTEDPDVSVLVLEAGVSDENVLGAEAPLLAPGLVPNSIFDWN 62
Query: 175 YMTMPEPHACKARPNGRCY-WARGKVMGGSSTINYMIYARGNAEDYDEWEAM-GNEGWGY 232
Y T +A NGR + RG+++GGSS+++YM+ RG+ ED+D + A+ G+EGW +
Sbjct: 63 YTT-----TAQAGYNGRSIAYPRGRMLGGSSSVHYMVMMRGSTEDFDRYAAVTGDEGWNW 117
Query: 233 DEVLEYFKKSEDNEDKEIYHKN-----PEYHGKGGYQTVEW----LPYADKNLPVLIKAW 283
D + ++ +K+E H P HG G ++ P D+ L +
Sbjct: 118 DNIQQFVRKNEMVVPPADNHNTSGEFIPAVHGTNGSVSISLPGFPTPLDDRVL-ATTQEQ 176
Query: 284 KEKGYPERDLNAENQIGVMHLQTTTRHGERLSTNGAFIRPIRKKRKNLTILTEAHVTRII 343
E+ + D+ + +G+ + +G+R S++ A++RP + R NL++L A VT+++
Sbjct: 177 SEEFFFNPDMGTGHPLGISWSIASVGNGQRSSSSTAYLRP-AQSRPNLSVLINAQVTKLV 235
Query: 344 CDKTPNKHKKLVAKSVEFFYX--XXXXXXXXXXEVISSAGAINSPKILMLSGIGPKDHLT 401
T N + VE+ EV+ SAG++ +P +L LSGIG ++ L+
Sbjct: 236 NSGTTNGLPAF--RCVEYAEQEGAPTTTVCAKKEVVLSAGSVGTPILLQLSGIGDENDLS 293
Query: 402 SLNIKTLV-DLKVGHNLQDHLTSDGIVIAFPKTATDRMYKKKVS---DAFEYKESRCGPL 457
S+ I T+V + VG NL DHL D +++ D ++ +R GPL
Sbjct: 294 SVGIDTIVNNPSVGRNLSDHLLLPAAFFVNSNQTFDNIFRDSSEFNVDLDQWTNTRTGPL 353
Query: 458 ASTGPLQCGVFAKTKLADSLDVPDIQFHHDPMSVRDWITNPVNASSTNMSPFAYYDGITV 517
+ L A +L + + Q DP + P +A + ++
Sbjct: 354 TA---LIANHLAWLRLPSNSSI--FQTFPDPAA------GPNSAHWETIFSNQWFHPAIP 402
Query: 518 RP----------ILLKPKSRGYIQLNATDPLWGPPLIFPKFFTKKPDL 555
RP L+ P +RG I+L ++P + PLI P++ + + D+
Sbjct: 403 RPDTGSFMSVTNALISPVARGDIKLATSNP-FDKPLINPQYLSTEFDI 449
>pdb|3T37|A Chain A, Crystal Structure Of Pyridoxine 4-Oxidase From Mesorbium
Loti
Length = 526
Score = 155 bits (393), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 128/413 (30%), Positives = 193/413 (46%), Gaps = 33/413 (7%)
Query: 119 DFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIEEPFFADV--PGLAPLISRSNIDWNYM 176
D +I+G GSAG +LA RLSE +VLL+EAG EEP D+ P P + + DW+Y
Sbjct: 19 DIVIVGGGSAGSLLAARLSEDPDSRVLLIEAG-EEPTDPDIWNPAAWPALQGRSYDWDYR 77
Query: 177 TMPEPHACKARPNGRC-YWARGKVMGGSSTINYMIYARGNAEDYDEW-EAMGNEGWGYDE 234
T +A GR +WARG+++GGSS ++ M Y RG+ D+ W +A G+ WG+DE
Sbjct: 78 T-----EAQAGTAGRAHHWARGRLIGGSSCLHAMGYMRGHPSDFQAWVDASGDRRWGWDE 132
Query: 235 VLEYFKKSEDNEDKEIYHKNPEYHGKGGYQTVEWLPYADKNLPVLIKAWKEKGYPERD-L 293
+L F+ ED+ E P A I+A G P +
Sbjct: 133 LLPVFQAIEDHPLGGDGIHGKGGPLPIHLPADEVSPLAR----AFIEAGASLGLPRLEGH 188
Query: 294 NAENQIGVMHLQTTTRHGERLSTNGAFIRPIRKKRKNLTILTEAHVTRIICDKTPNKHKK 353
N+ IGV R G R++ A++ + RKNLTILT + V R+ + + +
Sbjct: 189 NSGEMIGVTPNSLNIRDGRRVTAADAWLTKAVRGRKNLTILTGSRVRRLKLEGNQVRSLE 248
Query: 354 LVAK--SVEFFYXXXXXXXXXXXEVISSAGAINSPKILMLSGIGPKDHLTSLNIKTLVDL 411
+V + S E F +++ AGA+ SP +LM SGIGP D L + + L+D+
Sbjct: 249 VVGRQGSAEVF----------ADQIVLCAGALESPALLMRSGIGPHDVLDAAGVGCLIDM 298
Query: 412 K-VGHNLQDHLTSDGIVIAFPKTATDRMYKKKVSDAFEYKESRCGPLASTGPLQCGVFAK 470
+G NLQDHL G + A K + S A+ +S + CGV
Sbjct: 299 PDIGRNLQDHLLGAGNLYAARKPVPPSRLQHSESMAYMRADSFTAAGQPEIVVGCGV--A 356
Query: 471 TKLADSLDVPDIQFHHDPMSVRDWITNPVNASSTNMSPFAYYDGITVRPILLK 523
+++S P + S+ IT+P + S +S D + + P L+
Sbjct: 357 PIVSESFPAPAAGSAY---SLLFGITHPTSRGSVRISGPELGDRLIIDPAYLQ 406
>pdb|3Q9T|A Chain A, Crystal Structure Analysis Of Formate Oxidase
pdb|3Q9T|B Chain B, Crystal Structure Analysis Of Formate Oxidase
pdb|3Q9T|C Chain C, Crystal Structure Analysis Of Formate Oxidase
Length = 577
Score = 150 bits (378), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 143/485 (29%), Positives = 218/485 (44%), Gaps = 61/485 (12%)
Query: 114 DDMTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIEEPFFADVPGL-----APLISR 168
D FDF+I+G G+AG +A RL+E VL++EAGI P D+P + A +
Sbjct: 3 DGSHFDFVIVGGGTAGNTVAGRLAENPNVTVLIVEAGIGNP--EDIPEITTPSSAMDLRN 60
Query: 169 SNIDWNY---MTMPEPHACKARPNGRCYWARGKVMGGSSTINYMIYARGNAEDYDEWEAM 225
S DW Y M + + +PN RGK +GGSS++NY + G+ +D+WE
Sbjct: 61 SKYDWAYKTTMVRRDDYERIEKPN-----TRGKTLGGSSSLNYFTWVPGHKATFDQWEEF 115
Query: 226 GNEGWGYDEVLEYFKKSED-NEDKEIYHKNPEYHGKGGYQTVEWLPYADKNLPV---LIK 281
G + W +D ++ Y +KS ++D +Y E G GG + D+ P L K
Sbjct: 116 GGKEWTWDPLVPYLRKSATYHDDPRLYSPELEKIGGGGPIPISHAELIDEMAPFRENLTK 175
Query: 282 AWKEKGYPERDLNAENQI-GVMHLQTTTRHGERLSTNGAFIRPIRKKRKNLTILTEAHVT 340
AWK G P + + ++ G+ H T G+R +G+F+ K + N+TI+ E H
Sbjct: 176 AWKSMGQPLIENIYDGEMDGLTHCCDTIYRGQR---SGSFL--FVKNKPNITIVPEVHSK 230
Query: 341 RIICDKTPNKHKKLVAKS-----VEFFYXXXXXXXXXXXEVISSAGAINSPKILMLSGIG 395
R+I ++ K + + + FF EVI S G +PK+LMLSGIG
Sbjct: 231 RLIINEADRTCKGVTVVTAAGNELNFF---------ADREVILSQGVFETPKLLMLSGIG 281
Query: 396 PKDHLTSLNIKTLVDLK-VGHNLQDHLTSDGIVIAFPKTATD----RMYKKKVSDAFEYK 450
P L+ I T+VD + VG NL DH ++ D R K+ + Y
Sbjct: 282 PTRELSRHGINTIVDSRHVGQNLMDHPGVPFVLRVKDGFGMDDVLLRHGPKRDAVVSAYN 341
Query: 451 ESRCGPLASTGPLQCGVFAKT-----KLADSLDVPDIQFHHDPMSVRDWITNPVNASSTN 505
++R GP+ S G L+ F + K A+ DP S ++
Sbjct: 342 KNRSGPVGS-GLLELVGFPRIDKYLEKDAEYRKAKAANGGKDPFSPLGQPHFELDFVCMF 400
Query: 506 MSPFAYY-------DGITVRPILLKPKSR-GYIQLNATDPLWGPPLIFPKFFTKKPDLDV 557
+ F ++ D +TV L++P S G + LN+ DP P + FF DLD+
Sbjct: 401 GTAFQWHFPTPKTGDHLTVVVDLVRPISDPGEVTLNSADPFQQPNINL-NFFAN--DLDI 457
Query: 558 FVAGE 562
E
Sbjct: 458 IAMRE 462
>pdb|3LJP|A Chain A, Crystal Structure Of Choline Oxidase V464a Mutant
pdb|3LJP|B Chain B, Crystal Structure Of Choline Oxidase V464a Mutant
Length = 546
Score = 138 bits (347), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 138/460 (30%), Positives = 208/460 (45%), Gaps = 55/460 (11%)
Query: 111 EQDDDMTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIEEPFFADVPGLAPLIS--R 168
E D FD+I++G GSAG +A RLSE V L+EAG ++ +V L +
Sbjct: 7 ENLSDREFDYIVVGGGSAGAAVAARLSEDPAVSVALVEAGPDDRGVPEVLQLDRWMELLE 66
Query: 169 SNIDWNYMTMPEPHACKARPNGRCYWARGKVMGGSSTINYMIYARGNAEDYDEWEA-MGN 227
S DW+Y P+ + N AR KVMGG S+ N I ED DEWEA G
Sbjct: 67 SGYDWDYPIEPQENG-----NSFMRHARAKVMGGCSSHNSCIAFWAPREDLDEWEAKYGA 121
Query: 228 EGWGYDEVLEYFKKSEDNEDKEIYHKNPEYHGKGGYQTVEWLPYADKNLPVLIKAWKEKG 287
GW + +K+ E NED + +HG G + +P D L+ A ++ G
Sbjct: 122 TGWNAEAAWPLYKRLETNEDA---GPDAPHHGDSGPVHLMNVPPKDPTGVALLDACEQAG 178
Query: 288 YPERDLNAENQI--GVMHLQTTTRH-GERLSTNGAFIRPIRKKRKNLTILTEAHVTRIIC 344
P N + G Q R G R S++ ++I PI ++ +N T+LT +++
Sbjct: 179 IPRAKFNTGTTVVNGANFFQINRRADGTRSSSSVSYIHPIVEQ-ENFTLLTGLRARQLVF 237
Query: 345 DKTPNKHKKLVAKSVEFFYXXXXXXXXXXXEVISSAGAINSPKILMLSGIGPKDHLTSLN 404
D ++ + EV+ S GAI++PK+LMLSGIGP HL
Sbjct: 238 DAD----RRCTGVDIVDSAFGHTHRLTARNEVVLSTGAIDTPKLLMLSGIGPAAHLAEHG 293
Query: 405 IKTLVDLK-VGHNLQDHLTSDGIVIAFPKTATDRMYKKKVSDAFEYKESRCGPLASTGPL 463
I+ LVD VG +LQDH +G+V FE K+ ST
Sbjct: 294 IEVLVDSPGVGEHLQDH--PEGVV------------------QFEAKQPMVA--ESTQWW 331
Query: 464 QCGVFAKTKLADSLDVPDIQFHHDPMSVRDWITNPVNASSTNMSPFAYYDGITVRPILLK 523
+ G+F T+ D LD PD+ H+ + P + ++ +G ++ P +
Sbjct: 332 EIGIFTPTE--DGLDRPDLMMHYGSV--------PFDMNTLRHGYPTTENGFSLTPNVTH 381
Query: 524 PKSRGYIQLNATDPLWGPPLIFPKFFT--KKPDLDVFVAG 561
+SRG ++L + D P++ P++FT + D+ V VAG
Sbjct: 382 ARSRGTVRLRSRD-FRDKPMVDPRYFTDPEGHDMRVMVAG 420
>pdb|3NNE|A Chain A, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|B Chain B, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|C Chain C, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|D Chain D, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|E Chain E, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|F Chain F, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|G Chain G, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|H Chain H, Crystal Structure Of Choline Oxidase S101a Mutant
Length = 546
Score = 138 bits (347), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 138/460 (30%), Positives = 208/460 (45%), Gaps = 55/460 (11%)
Query: 111 EQDDDMTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIEEPFFADVPGLAPLIS--R 168
E D FD+I++G GSAG +A RLSE V L+EAG ++ +V L +
Sbjct: 7 ENLSDREFDYIVVGGGSAGAAVAARLSEDPAVSVALVEAGPDDRGVPEVLQLDRWMELLE 66
Query: 169 SNIDWNYMTMPEPHACKARPNGRCYWARGKVMGGSSTINYMIYARGNAEDYDEWEA-MGN 227
S DW+Y P+ + N AR KVMGG S+ N I ED DEWEA G
Sbjct: 67 SGYDWDYPIEPQENG-----NSFMRHARAKVMGGCSSHNACIAFWAPREDLDEWEAKYGA 121
Query: 228 EGWGYDEVLEYFKKSEDNEDKEIYHKNPEYHGKGGYQTVEWLPYADKNLPVLIKAWKEKG 287
GW + +K+ E NED + +HG G + +P D L+ A ++ G
Sbjct: 122 TGWNAEAAWPLYKRLETNEDA---GPDAPHHGDSGPVHLMNVPPKDPTGVALLDACEQAG 178
Query: 288 YPERDLNAENQI--GVMHLQTTTRH-GERLSTNGAFIRPIRKKRKNLTILTEAHVTRIIC 344
P N + G Q R G R S++ ++I PI ++ +N T+LT +++
Sbjct: 179 IPRAKFNTGTTVVNGANFFQINRRADGTRSSSSVSYIHPIVEQ-ENFTLLTGLRARQLVF 237
Query: 345 DKTPNKHKKLVAKSVEFFYXXXXXXXXXXXEVISSAGAINSPKILMLSGIGPKDHLTSLN 404
D ++ + EV+ S GAI++PK+LMLSGIGP HL
Sbjct: 238 DAD----RRCTGVDIVDSAFGHTHRLTARNEVVLSTGAIDTPKLLMLSGIGPAAHLAEHG 293
Query: 405 IKTLVDLK-VGHNLQDHLTSDGIVIAFPKTATDRMYKKKVSDAFEYKESRCGPLASTGPL 463
I+ LVD VG +LQDH +G+V FE K+ ST
Sbjct: 294 IEVLVDSPGVGEHLQDH--PEGVV------------------QFEAKQPMVA--ESTQWW 331
Query: 464 QCGVFAKTKLADSLDVPDIQFHHDPMSVRDWITNPVNASSTNMSPFAYYDGITVRPILLK 523
+ G+F T+ D LD PD+ H+ + P + ++ +G ++ P +
Sbjct: 332 EIGIFTPTE--DGLDRPDLMMHYGSV--------PFDMNTLRHGYPTTENGFSLTPNVTH 381
Query: 524 PKSRGYIQLNATDPLWGPPLIFPKFFT--KKPDLDVFVAG 561
+SRG ++L + D P++ P++FT + D+ V VAG
Sbjct: 382 ARSRGTVRLRSRD-FRDKPMVDPRYFTDPEGHDMRVMVAG 420
>pdb|2JBV|A Chain A, Crystal Structure Of Choline Oxidase Reveals Insights Into
The Catalytic Mechanism
pdb|2JBV|B Chain B, Crystal Structure Of Choline Oxidase Reveals Insights Into
The Catalytic Mechanism
Length = 546
Score = 138 bits (347), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 138/460 (30%), Positives = 208/460 (45%), Gaps = 55/460 (11%)
Query: 111 EQDDDMTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIEEPFFADVPGLAPLIS--R 168
E D FD+I++G GSAG +A RLSE V L+EAG ++ +V L +
Sbjct: 7 ENLSDREFDYIVVGGGSAGAAVAARLSEDPAVSVALVEAGPDDRGVPEVLQLDRWMELLE 66
Query: 169 SNIDWNYMTMPEPHACKARPNGRCYWARGKVMGGSSTINYMIYARGNAEDYDEWEA-MGN 227
S DW+Y P+ + N AR KVMGG S+ N I ED DEWEA G
Sbjct: 67 SGYDWDYPIEPQENG-----NSFMRHARAKVMGGCSSHNSCIAFWAPREDLDEWEAKYGA 121
Query: 228 EGWGYDEVLEYFKKSEDNEDKEIYHKNPEYHGKGGYQTVEWLPYADKNLPVLIKAWKEKG 287
GW + +K+ E NED + +HG G + +P D L+ A ++ G
Sbjct: 122 TGWNAEAAWPLYKRLETNEDA---GPDAPHHGDSGPVHLMNVPPKDPTGVALLDACEQAG 178
Query: 288 YPERDLNAENQI--GVMHLQTTTRH-GERLSTNGAFIRPIRKKRKNLTILTEAHVTRIIC 344
P N + G Q R G R S++ ++I PI ++ +N T+LT +++
Sbjct: 179 IPRAKFNTGTTVVNGANFFQINRRADGTRSSSSVSYIHPIVEQ-ENFTLLTGLRARQLVF 237
Query: 345 DKTPNKHKKLVAKSVEFFYXXXXXXXXXXXEVISSAGAINSPKILMLSGIGPKDHLTSLN 404
D ++ + EV+ S GAI++PK+LMLSGIGP HL
Sbjct: 238 DAD----RRCTGVDIVDSAFGHTHRLTARNEVVLSTGAIDTPKLLMLSGIGPAAHLAEHG 293
Query: 405 IKTLVDLK-VGHNLQDHLTSDGIVIAFPKTATDRMYKKKVSDAFEYKESRCGPLASTGPL 463
I+ LVD VG +LQDH +G+V FE K+ ST
Sbjct: 294 IEVLVDSPGVGEHLQDH--PEGVV------------------QFEAKQPMVA--ESTQWW 331
Query: 464 QCGVFAKTKLADSLDVPDIQFHHDPMSVRDWITNPVNASSTNMSPFAYYDGITVRPILLK 523
+ G+F T+ D LD PD+ H+ + P + ++ +G ++ P +
Sbjct: 332 EIGIFTPTE--DGLDRPDLMMHYGSV--------PFDMNTLRHGYPTTENGFSLTPNVTH 381
Query: 524 PKSRGYIQLNATDPLWGPPLIFPKFFT--KKPDLDVFVAG 561
+SRG ++L + D P++ P++FT + D+ V VAG
Sbjct: 382 ARSRGTVRLRSRD-FRDKPMVDPRYFTDPEGHDMRVMVAG 420
>pdb|1CF3|A Chain A, Glucose Oxidase From Apergillus Niger
pdb|1GAL|A Chain A, Crystal Structure Of Glucose Oxidase From Aspergillus
Niger: Refined At 2.3 Angstroms Resolution
pdb|3QVP|A Chain A, Crystal Structure Of Glucose Oxidase For Space Group C2221
At 1.2 A Resolution
pdb|3QVR|A Chain A, Crystal Structure Of Glucose Oxidase For Space Group P3121
At 1.3 A Resolution
Length = 583
Score = 106 bits (264), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 136/480 (28%), Positives = 204/480 (42%), Gaps = 78/480 (16%)
Query: 117 TFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIEE----PFFADVPGLAPLISRSNID 172
T D+II G G G A RL+E VL++E+G E P D+ + S++D
Sbjct: 19 TVDYIIAGGGLTGLTTAARLTENPNISVLVIESGSYESDRGPIIEDLNAYGDIFG-SSVD 77
Query: 173 WNYMTMPEPHACKARPNGRCYWARGKVMGGSSTINYMIYARGNAEDYDEWEAM-GNEGWG 231
Y T+ A N G +GGS+ +N + R + D WE + GNEGW
Sbjct: 78 HAYETVE-----LATNNQTALIRSGNGLGGSTLVNGGTWTRPHKAQVDSWETVFGNEGWN 132
Query: 232 YDEVLEYFKKSEDNED---KEI---YHKNPEYHGKGGYQTVEWLP--YADKNLPV---LI 280
+D V Y ++E K+I ++ N HG G TV P D P+ L+
Sbjct: 133 WDNVAAYSLQAERARAPNAKQIAAGHYFNASCHGVNG--TVHAGPRDTGDDYSPIVKALM 190
Query: 281 KAWKEKGYP-ERDLNAENQIGVMHLQTTTRHGERLSTNGA--FIRPIRKKRKNLTILTEA 337
A +++G P ++D + GV + T H +++ ++ A ++ P +R NL +LT
Sbjct: 191 SAVEDRGVPTKKDFGCGDPHGV-SMFPNTLHEDQVRSDAAREWLLP-NYQRPNLQVLTGQ 248
Query: 338 HVTRIICDKTPNKHKKLVAKSVEF-FYXXXXXXXXXXXEVISSAGAINSPKILMLSGIGP 396
+V +++ + + A VEF + EV+ +AG+ SP IL SGIG
Sbjct: 249 YVGKVLLSQNGTTPR---AVGVEFGTHKGNTHNVYAKHEVLLAAGSAVSPTILEYSGIGM 305
Query: 397 KDHLTSLNIKTLVDLKVGHNLQDH--------LTSDGI-------VIAFPKTATDRMYKK 441
K L L I T+VDL VG NLQD +TS G F +T D Y +
Sbjct: 306 KSILEPLGIDTVVDLPVGLNLQDQTTATVRSRITSAGAGQGQAAWFATFNETFGD--YSE 363
Query: 442 KVSDAFEYKESRCGPLASTGPLQCGVFAKTKLADSLDVPDIQFHHDPMSVRDWITNPVNA 501
K A E ++ A + G T L IQ+ + RDWI N A
Sbjct: 364 K---AHELLNTKLEQWAEEAVARGGFHNTTALL-------IQYEN----YRDWIVNHNVA 409
Query: 502 SS------TNMSPFAYYDGITVRPILLKPKSRGYIQLNATDPLWGPPLIFPKFFTKKPDL 555
S ++ F +D L P +RGY+ + DP P++F + DL
Sbjct: 410 YSELFLDTAGVASFDVWD--------LLPFTRGYVHILDKDPYLHHFAYDPQYFLNELDL 461
>pdb|1GPE|A Chain A, Glucose Oxidase From Penicillium Amagasakiense
pdb|1GPE|B Chain B, Glucose Oxidase From Penicillium Amagasakiense
Length = 587
Score = 103 bits (258), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 100/333 (30%), Positives = 147/333 (44%), Gaps = 46/333 (13%)
Query: 117 TFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIEEP---FFADVPGLAPLISRSNIDW 173
T+D+II G G G +A +L+E K KVL++E G E + P I + +D
Sbjct: 24 TYDYIIAGGGLTGLTVAAKLTENPKIKVLVIEKGFYESNDGAIIEDPNAYGQIFGTTVDQ 83
Query: 174 NYMTMPEPHACKARPNGRCYWARGKVMGGSSTINYMIYARGNAEDYDEWE-AMGNEGWGY 232
NY+T+P R N GK +GGS+ IN + R + D WE G EGW +
Sbjct: 84 NYLTVP---LINNRTNNI---KAGKGLGGSTLINGDSWTRPDKVQIDSWEKVFGMEGWNW 137
Query: 233 DEVLEYFKKSEDNEDKEI------YHKNPEYHGKGGYQTVE---------WLPYADKNLP 277
D + EY KK+E + N HG G TV+ W P +
Sbjct: 138 DNMFEYMKKAEAARTPTAAQLAAGHSFNATCHGTNG--TVQSGARDNGQPWSPI----MK 191
Query: 278 VLIKAWKEKGYP-ERDLNAENQIGV-MHLQTTTRHGERLSTNGAFIRPIRKKRKNLTILT 335
L+ G P ++D + GV M + + R+ A++ P +R NL ILT
Sbjct: 192 ALMNTVSALGVPVQQDFLCGHPRGVSMIMNNLDENQVRVDAARAWLLP-NYQRSNLEILT 250
Query: 336 EAHVTRIICDKTPNKHKKL-----VAKSVEFFYXXXXXXXXXXXEVISSAGAINSPKILM 390
V +++ +T + + + K+V F EV+ +AG+ SP IL
Sbjct: 251 GQMVGKVLFKQTASGPQAVGVNFGTNKAVNF-------DVFAKHEVLLAAGSAISPLILE 303
Query: 391 LSGIGPKDHLTSLNIKTLVDLKVGHNLQDHLTS 423
SGIG K L N+ L+DL VG N+QD T+
Sbjct: 304 YSGIGLKSVLDQANVTQLLDLPVGINMQDQTTT 336
>pdb|3GDN|A Chain A, Almond Hydroxynitrile Lyase In Complex With Benzaldehyde
pdb|3GDN|B Chain B, Almond Hydroxynitrile Lyase In Complex With Benzaldehyde
pdb|3GDP|A Chain A, Hydroxynitrile Lyase From Almond, Monoclinic Crystal Form
pdb|3GDP|B Chain B, Hydroxynitrile Lyase From Almond, Monoclinic Crystal Form
Length = 521
Score = 81.6 bits (200), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 87/314 (27%), Positives = 136/314 (43%), Gaps = 51/314 (16%)
Query: 117 TFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIEEPFFADVPGLAPLISRSNIDWNYM 176
++D++I+G G++GC LA LSE K+KVL+LE G + +V + + +
Sbjct: 26 SYDYVIVGGGTSGCPLAATLSE--KYKVLVLERGSLPTAYPNVLTADGFVYNLQQEDDGK 83
Query: 177 TMPEPHACKARPNGRCYWARGKVMGGSSTINYMIYARGNAEDYDEWEAMGNEGWGYDEVL 236
T E + + RG+V+GG+S IN +YAR N Y A G + W D V
Sbjct: 84 TPVERFVSEDGIDN----VRGRVLGGTSIINAGVYARANTSIY---SASGVD-WDMDLVN 135
Query: 237 EYFKKSEDNEDKEIYHKNPEYHGKGGYQTVEWLPYADKNLPVLIKAWKEKG-YPERDLNA 295
+ ++ ED T+ + P + V A+ E G +P +
Sbjct: 136 QTYEWVED--------------------TIVYKPNSQSWQSVTKTAFLEAGVHPNHGFSL 175
Query: 296 ENQIGVMHLQTT-----TRHGERLSTNGAFIRPIRKKRKNLTILTEAHVTRIICDKTPNK 350
+++ G +T TRH N + NL + A V +II P
Sbjct: 176 DHEEGTRITGSTFDNKGTRHAADELLN-------KGNSNNLRVGVHASVEKIIFSNAPG- 227
Query: 351 HKKLVAKSVEFFYXXXX---XXXXXXXEVISSAGAINSPKILMLSGIGPKDHLTSLNIKT 407
L A V + EVI SAG I +P++L+LSG+GP+ +L+SLNI
Sbjct: 228 ---LTATGVIYRDSNGTPHQAFVRSKGEVIVSAGTIGTPQLLLLSGVGPESYLSSLNIPV 284
Query: 408 LVDLK-VGHNLQDH 420
++ VG L D+
Sbjct: 285 VLSHPYVGQFLHDN 298
>pdb|1JU2|A Chain A, Crystal Structure Of The Hydroxynitrile Lyase From Almond
pdb|1JU2|B Chain B, Crystal Structure Of The Hydroxynitrile Lyase From Almond
Length = 536
Score = 81.3 bits (199), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 87/314 (27%), Positives = 136/314 (43%), Gaps = 51/314 (16%)
Query: 117 TFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIEEPFFADVPGLAPLISRSNIDWNYM 176
++D++I+G G++GC LA LSE K+KVL+LE G + +V + + +
Sbjct: 26 SYDYVIVGGGTSGCPLAATLSE--KYKVLVLERGSLPTAYPNVLTADGFVYNLQQEDDGK 83
Query: 177 TMPEPHACKARPNGRCYWARGKVMGGSSTINYMIYARGNAEDYDEWEAMGNEGWGYDEVL 236
T E + + RG+V+GG+S IN +YAR N Y A G + W D V
Sbjct: 84 TPVERFVSEDGIDN----VRGRVLGGTSIINAGVYARANTSIY---SASGVD-WDMDLVN 135
Query: 237 EYFKKSEDNEDKEIYHKNPEYHGKGGYQTVEWLPYADKNLPVLIKAWKEKG-YPERDLNA 295
+ ++ ED T+ + P + V A+ E G +P +
Sbjct: 136 QTYEWVED--------------------TIVYKPNSQSWQSVTKTAFLEAGVHPNHGFSL 175
Query: 296 ENQIGVMHLQTT-----TRHGERLSTNGAFIRPIRKKRKNLTILTEAHVTRIICDKTPNK 350
+++ G +T TRH N + NL + A V +II P
Sbjct: 176 DHEEGTRITGSTFDNKGTRHAADELLN-------KGNSNNLRVGVHASVEKIIFSNAPG- 227
Query: 351 HKKLVAKSVEFFYXXXX---XXXXXXXEVISSAGAINSPKILMLSGIGPKDHLTSLNIKT 407
L A V + EVI SAG I +P++L+LSG+GP+ +L+SLNI
Sbjct: 228 ---LTATGVIYRDSNGTPHQAFVRSKGEVIVSAGTIGTPQLLLLSGVGPESYLSSLNIPV 284
Query: 408 LVDLK-VGHNLQDH 420
++ VG L D+
Sbjct: 285 VLSHPYVGQFLHDN 298
>pdb|3RED|A Chain A, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|B Chain B, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|C Chain C, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|D Chain D, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|E Chain E, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|F Chain F, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|G Chain G, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|H Chain H, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|I Chain I, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|J Chain J, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|K Chain K, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|L Chain L, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
Length = 521
Score = 79.3 bits (194), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 87/315 (27%), Positives = 133/315 (42%), Gaps = 52/315 (16%)
Query: 117 TFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIEEPFFADVPGLAP-LISRSNIDWNY 175
++D++I+G G++GC LA LSE K+KVL+LE G +P P L++ +N
Sbjct: 26 SYDYVIVGGGTSGCPLAATLSE--KYKVLVLERGT-------LPTAYPNLLTSDGFIYNL 76
Query: 176 MTMPEPHACKAR--PNGRCYWARGKVMGGSSTINYMIYARGNAEDYDEWEAMGNEGWGYD 233
+ R RG+V+GG+S IN +YAR N + + A G E W D
Sbjct: 77 QQEDDGQTPVERFVSGDGIDDVRGRVLGGTSMINAGVYARANTKIF---SASGIE-WDMD 132
Query: 234 EVLEYFKKSEDNEDKEIYHKNPEYHGKGGYQTVEWLPYADKNLPVLIKAWK---EKGYPE 290
V + + ED T+ + P DK +AW+ + + E
Sbjct: 133 LVNQTYDWVED--------------------TIVYKP--DK------QAWQSLTKTAFLE 164
Query: 291 RDLNAENQIGVMHLQTTTRHGERLSTNGAFIRPIRKKRK----NLTILTEAHVTRIICDK 346
+ +N + H T G NG K NL + A V +II
Sbjct: 165 AGVLPDNGFSLDHEAGTRLTGSTFDNNGTRHASDELLNKGDPNNLRVAVHASVEKIIFSS 224
Query: 347 TPNKHKKLVAKSVEFFYXXXXXXXXXXXEVISSAGAINSPKILMLSGIGPKDHLTSLNIK 406
+ + + EVI SAG I SP++L+LSG+GP+ +L+SLNI
Sbjct: 225 NSSGVTAIGVIYKDSNGTPHQAFVRGEGEVIVSAGPIGSPQLLLLSGVGPESYLSSLNIP 284
Query: 407 TLVDLK-VGHNLQDH 420
++ VG L D+
Sbjct: 285 VVLSHPYVGQFLHDN 299
>pdb|1NAA|A Chain A, Cellobiose Dehydrogenase Flavoprotein Fragment In Complex
With Cellobionolactam
pdb|1NAA|B Chain B, Cellobiose Dehydrogenase Flavoprotein Fragment In Complex
With Cellobionolactam
Length = 541
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 87/387 (22%), Positives = 146/387 (37%), Gaps = 82/387 (21%)
Query: 118 FDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIEEPFFADVPGLAPLISRSNIDWNYMT 177
+D+II+GAG G + A+RLSE K KVLLLE G +AP + S +
Sbjct: 3 YDYIIVGAGPGGIIAADRLSEAGK-KVLLLERGGPSTKQTGGTYVAPWATSSGL--TKFD 59
Query: 178 MPEPHACKARPNGRCYWAR------GKVMGGSSTINYMIYARGNAEDYDE---WEAMGNE 228
+P + +W + G ++GG +++N +Y N D+ W +
Sbjct: 60 IPGLFESLFTDSNPFWWCKDITVFAGCLVGGGTSVNGALYWYPNDGDFSSSVGWPSSWTN 119
Query: 229 GWGYDEVLEYFKKSEDNEDKEIYHKNPEYHGKGGYQTVEWLPYADKNLPVLIKAWKEKGY 288
Y L S D +P G+ Y +++ V+ + K +GY
Sbjct: 120 HAPYTSKLSSRLPSTD---------HPSTDGQR---------YLEQSFNVVSQLLKGQGY 161
Query: 289 PERDLNAENQIGVMHLQTTTR----HGERLSTNGAFIRPIRKKRKNLTILTEAHVTRIIC 344
+ +N +N H+ + +G+R +++ R N T T V+ ++
Sbjct: 162 NQATIN-DNPNYKDHVFGYSAFDFLNGKRAGPVATYLQ-TALARPNFTFKTNVMVSNVVR 219
Query: 345 DKT-------------PNKHKKLVAKSVEFFYXXXXXXXXXXXEVISSAGAINSPKILML 391
+ + PN + K VI SAGA + +IL
Sbjct: 220 NGSQILGVQTNDPTLGPNGFIPVTPKG----------------RVILSAGAFGTSRILFQ 263
Query: 392 SGIGPKDHLTSLNIKTL-----------VDLKVGHNLQDHLTSDGIVIAFP-----KTAT 435
SGIGP D + ++ ++L VG N QD+ S +V P +
Sbjct: 264 SGIGPTDMIQTVQSNPTAAAALPPQNQWINLPVGMNAQDN-PSINLVFTHPSIDAYENWA 322
Query: 436 DRMYKKKVSDAFEYKESRCGPLASTGP 462
D + +DA +Y ++ G A P
Sbjct: 323 DVWSNPRPADAAQYLANQSGVFAGASP 349
>pdb|1KDG|A Chain A, Crystal Structure Of The Flavin Domain Of Cellobiose
Dehydrogenase
pdb|1KDG|B Chain B, Crystal Structure Of The Flavin Domain Of Cellobiose
Dehydrogenase
Length = 546
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 87/387 (22%), Positives = 146/387 (37%), Gaps = 82/387 (21%)
Query: 118 FDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIEEPFFADVPGLAPLISRSNIDWNYMT 177
+D+II+GAG G + A+RLSE K KVLLLE G +AP + S +
Sbjct: 8 YDYIIVGAGPGGIIAADRLSEAGK-KVLLLERGGPSTKQTGGTYVAPWATSSGL--TKFD 64
Query: 178 MPEPHACKARPNGRCYWAR------GKVMGGSSTINYMIYARGNAEDYDE---WEAMGNE 228
+P + +W + G ++GG +++N +Y N D+ W +
Sbjct: 65 IPGLFESLFTDSNPFWWCKDITVFAGCLVGGGTSVNGALYWYPNDGDFSSSVGWPSSWTN 124
Query: 229 GWGYDEVLEYFKKSEDNEDKEIYHKNPEYHGKGGYQTVEWLPYADKNLPVLIKAWKEKGY 288
Y L S D +P G+ Y +++ V+ + K +GY
Sbjct: 125 HAPYTSKLSSRLPSTD---------HPSTDGQR---------YLEQSFNVVSQLLKGQGY 166
Query: 289 PERDLNAENQIGVMHLQTTTR----HGERLSTNGAFIRPIRKKRKNLTILTEAHVTRIIC 344
+ +N +N H+ + +G+R +++ R N T T V+ ++
Sbjct: 167 NQATIN-DNPNYKDHVFGYSAFDFLNGKRAGPVATYLQ-TALARPNFTFKTNVMVSNVVR 224
Query: 345 DKT-------------PNKHKKLVAKSVEFFYXXXXXXXXXXXEVISSAGAINSPKILML 391
+ + PN + K VI SAGA + +IL
Sbjct: 225 NGSQILGVQTNDPTLGPNGFIPVTPKG----------------RVILSAGAFGTSRILFQ 268
Query: 392 SGIGPKDHLTSLNIKTL-----------VDLKVGHNLQDHLTSDGIVIAFP-----KTAT 435
SGIGP D + ++ ++L VG N QD+ S +V P +
Sbjct: 269 SGIGPTDMIQTVQSNPTAAAALPPQNQWINLPVGMNAQDN-PSINLVFTHPSIDAYENWA 327
Query: 436 DRMYKKKVSDAFEYKESRCGPLASTGP 462
D + +DA +Y ++ G A P
Sbjct: 328 DVWSNPRPADAAQYLANQSGVFAGASP 354
>pdb|3HDQ|A Chain A, Crystal Structure Of Udp-Galactopyranose Mutase (Oxidized
Form) In Complex With Substrate
pdb|3HDQ|B Chain B, Crystal Structure Of Udp-Galactopyranose Mutase (Oxidized
Form) In Complex With Substrate
pdb|3HDQ|C Chain C, Crystal Structure Of Udp-Galactopyranose Mutase (Oxidized
Form) In Complex With Substrate
pdb|3HDQ|D Chain D, Crystal Structure Of Udp-Galactopyranose Mutase (Oxidized
Form) In Complex With Substrate
pdb|3HDQ|E Chain E, Crystal Structure Of Udp-Galactopyranose Mutase (Oxidized
Form) In Complex With Substrate
pdb|3HDQ|F Chain F, Crystal Structure Of Udp-Galactopyranose Mutase (Oxidized
Form) In Complex With Substrate
pdb|3HDQ|G Chain G, Crystal Structure Of Udp-Galactopyranose Mutase (Oxidized
Form) In Complex With Substrate
pdb|3HDQ|H Chain H, Crystal Structure Of Udp-Galactopyranose Mutase (Oxidized
Form) In Complex With Substrate
pdb|3HDQ|I Chain I, Crystal Structure Of Udp-Galactopyranose Mutase (Oxidized
Form) In Complex With Substrate
pdb|3HDQ|J Chain J, Crystal Structure Of Udp-Galactopyranose Mutase (Oxidized
Form) In Complex With Substrate
pdb|3HDY|A Chain A, Crystal Structure Of Udp-Galactopyranose Mutase (Reduced
Form) In Complex With Substrate
pdb|3HDY|B Chain B, Crystal Structure Of Udp-Galactopyranose Mutase (Reduced
Form) In Complex With Substrate
pdb|3HDY|C Chain C, Crystal Structure Of Udp-Galactopyranose Mutase (Reduced
Form) In Complex With Substrate
pdb|3HDY|D Chain D, Crystal Structure Of Udp-Galactopyranose Mutase (Reduced
Form) In Complex With Substrate
pdb|3HDY|E Chain E, Crystal Structure Of Udp-Galactopyranose Mutase (Reduced
Form) In Complex With Substrate
pdb|3HDY|F Chain F, Crystal Structure Of Udp-Galactopyranose Mutase (Reduced
Form) In Complex With Substrate
pdb|3HDY|G Chain G, Crystal Structure Of Udp-Galactopyranose Mutase (Reduced
Form) In Complex With Substrate
pdb|3HDY|H Chain H, Crystal Structure Of Udp-Galactopyranose Mutase (Reduced
Form) In Complex With Substrate
pdb|3HDY|I Chain I, Crystal Structure Of Udp-Galactopyranose Mutase (Reduced
Form) In Complex With Substrate
pdb|3HDY|J Chain J, Crystal Structure Of Udp-Galactopyranose Mutase (Reduced
Form) In Complex With Substrate
pdb|3HE3|A Chain A, Crystal Structure Of Udp-Galactopyranose Mutase In Complex
With Udp
pdb|3HE3|B Chain B, Crystal Structure Of Udp-Galactopyranose Mutase In Complex
With Udp
pdb|3HE3|C Chain C, Crystal Structure Of Udp-Galactopyranose Mutase In Complex
With Udp
pdb|3HE3|D Chain D, Crystal Structure Of Udp-Galactopyranose Mutase In Complex
With Udp
pdb|3HE3|E Chain E, Crystal Structure Of Udp-Galactopyranose Mutase In Complex
With Udp
pdb|3HE3|F Chain F, Crystal Structure Of Udp-Galactopyranose Mutase In Complex
With Udp
pdb|3HE3|G Chain G, Crystal Structure Of Udp-Galactopyranose Mutase In Complex
With Udp
pdb|3HE3|H Chain H, Crystal Structure Of Udp-Galactopyranose Mutase In Complex
With Udp
pdb|3HE3|I Chain I, Crystal Structure Of Udp-Galactopyranose Mutase In Complex
With Udp
pdb|3HE3|J Chain J, Crystal Structure Of Udp-Galactopyranose Mutase In Complex
With Udp
pdb|3MJ4|A Chain A, Crystal Structure Of Udp-Galactopyranose Mutase In Complex
With Phosphonate Analog Of Udp-Galactopyranose
pdb|3MJ4|B Chain B, Crystal Structure Of Udp-Galactopyranose Mutase In Complex
With Phosphonate Analog Of Udp-Galactopyranose
pdb|3MJ4|C Chain C, Crystal Structure Of Udp-Galactopyranose Mutase In Complex
With Phosphonate Analog Of Udp-Galactopyranose
pdb|3MJ4|D Chain D, Crystal Structure Of Udp-Galactopyranose Mutase In Complex
With Phosphonate Analog Of Udp-Galactopyranose
pdb|3MJ4|E Chain E, Crystal Structure Of Udp-Galactopyranose Mutase In Complex
With Phosphonate Analog Of Udp-Galactopyranose
pdb|3MJ4|F Chain F, Crystal Structure Of Udp-Galactopyranose Mutase In Complex
With Phosphonate Analog Of Udp-Galactopyranose
pdb|3MJ4|G Chain G, Crystal Structure Of Udp-Galactopyranose Mutase In Complex
With Phosphonate Analog Of Udp-Galactopyranose
pdb|3MJ4|H Chain H, Crystal Structure Of Udp-Galactopyranose Mutase In Complex
With Phosphonate Analog Of Udp-Galactopyranose
pdb|3MJ4|I Chain I, Crystal Structure Of Udp-Galactopyranose Mutase In Complex
With Phosphonate Analog Of Udp-Galactopyranose
pdb|3MJ4|J Chain J, Crystal Structure Of Udp-Galactopyranose Mutase In Complex
With Phosphonate Analog Of Udp-Galactopyranose
Length = 397
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 31/48 (64%), Gaps = 1/48 (2%)
Query: 101 DKDHKNNNREEQDDDMTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLE 148
++ + N EQ + FD++I+GAG AG VLA RL+ + +VL+++
Sbjct: 13 ERTEQTNTTNEQQESKGFDYLIVGAGFAGSVLAERLASSGQ-RVLIVD 59
>pdb|1I8T|A Chain A, Strcuture Of Udp-Galactopyranose Mutase From E.Coli
pdb|1I8T|B Chain B, Strcuture Of Udp-Galactopyranose Mutase From E.Coli
Length = 367
Score = 33.1 bits (74), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 23/31 (74%), Gaps = 1/31 (3%)
Query: 118 FDFIIIGAGSAGCVLANRLSEIKKWKVLLLE 148
+D+II+G+G G V AN L ++ K KVL++E
Sbjct: 2 YDYIIVGSGLFGAVCANELKKLNK-KVLVIE 31
>pdb|2VVL|A Chain A, The Structure Of Mao-N-D3, A Variant Of Monoamine Oxidase
From Aspergillus Niger.
pdb|2VVL|B Chain B, The Structure Of Mao-N-D3, A Variant Of Monoamine Oxidase
From Aspergillus Niger.
pdb|2VVL|C Chain C, The Structure Of Mao-N-D3, A Variant Of Monoamine Oxidase
From Aspergillus Niger.
pdb|2VVL|D Chain D, The Structure Of Mao-N-D3, A Variant Of Monoamine Oxidase
From Aspergillus Niger.
pdb|2VVL|E Chain E, The Structure Of Mao-N-D3, A Variant Of Monoamine Oxidase
From Aspergillus Niger.
pdb|2VVL|F Chain F, The Structure Of Mao-N-D3, A Variant Of Monoamine Oxidase
From Aspergillus Niger.
pdb|2VVL|H Chain H, The Structure Of Mao-N-D3, A Variant Of Monoamine Oxidase
From Aspergillus Niger
Length = 495
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 107 NNREEQDDDMTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEA 149
N E+ D D +D I+IG G G + A R + +K LLLEA
Sbjct: 29 TNIEDTDKDGPWDVIVIGGGYCG-LTATRDLTVAGFKTLLLEA 70
>pdb|2VVM|A Chain A, The Structure Of Mao-N-D5, A Variant Of Monoamine Oxidase
From Aspergillus Niger.
pdb|2VVM|B Chain B, The Structure Of Mao-N-D5, A Variant Of Monoamine Oxidase
From Aspergillus Niger
Length = 495
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 107 NNREEQDDDMTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEA 149
N E+ D D +D I+IG G G + A R + +K LLLEA
Sbjct: 29 TNIEDTDKDGPWDVIVIGGGYCG-LTATRDLTVAGFKTLLLEA 70
>pdb|2VVL|G Chain G, The Structure Of Mao-N-D3, A Variant Of Monoamine Oxidase
From Aspergillus Niger
Length = 495
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 107 NNREEQDDDMTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEA 149
N E+ D D +D I+IG G G + A R + +K LLLEA
Sbjct: 29 TNIEDTDKDGPWDVIVIGGGYCG-LTATRDLTVAGFKTLLLEA 70
>pdb|3J0E|H Chain H, Models For The T. Thermophilus Ribosome Recycling Factor
And The E. Coli Elongation Factor G Bound To The E. Coli
Post-Termination Complex
Length = 702
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 32/72 (44%)
Query: 260 KGGYQTVEWLPYADKNLPVLIKAWKEKGYPERDLNAENQIGVMHLQTTTRHGERLSTNGA 319
KGG E++P DK + +KA GYP D+ G H ++ +L+ + A
Sbjct: 540 KGGVIPGEYIPAVDKGIQEQLKAGPLAGYPVVDMGIRLHFGSYHDVDSSELAFKLAASIA 599
Query: 320 FIRPIRKKRKNL 331
F +K + L
Sbjct: 600 FKEGFKKAKPVL 611
>pdb|2RDO|7 Chain 7, 50s Subunit With Ef-G(Gdpnp) And Rrf Bound
Length = 704
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 32/72 (44%)
Query: 260 KGGYQTVEWLPYADKNLPVLIKAWKEKGYPERDLNAENQIGVMHLQTTTRHGERLSTNGA 319
KGG E++P DK + +KA GYP D+ G H ++ +L+ + A
Sbjct: 541 KGGVIPGEYIPAVDKGIQEQLKAGPLAGYPVVDMGIRLHFGSYHDVDSSELAFKLAASIA 600
Query: 320 FIRPIRKKRKNL 331
F +K + L
Sbjct: 601 FKEGFKKAKPVL 612
>pdb|3V93|A Chain A, Unliganded Structure Of Tcrpdec1 Catalytic Domain
pdb|3V93|B Chain B, Unliganded Structure Of Tcrpdec1 Catalytic Domain
pdb|3V93|C Chain C, Unliganded Structure Of Tcrpdec1 Catalytic Domain
pdb|3V93|D Chain D, Unliganded Structure Of Tcrpdec1 Catalytic Domain
pdb|3V93|E Chain E, Unliganded Structure Of Tcrpdec1 Catalytic Domain
pdb|3V93|F Chain F, Unliganded Structure Of Tcrpdec1 Catalytic Domain
pdb|3V93|G Chain G, Unliganded Structure Of Tcrpdec1 Catalytic Domain
pdb|3V93|H Chain H, Unliganded Structure Of Tcrpdec1 Catalytic Domain
pdb|3V94|A Chain A, Tcrpdec1 Catalytic Domain In Complex With Inhibitor Wyq16
pdb|3V94|B Chain B, Tcrpdec1 Catalytic Domain In Complex With Inhibitor Wyq16
pdb|3V94|C Chain C, Tcrpdec1 Catalytic Domain In Complex With Inhibitor Wyq16
pdb|3V94|D Chain D, Tcrpdec1 Catalytic Domain In Complex With Inhibitor Wyq16
pdb|3V94|E Chain E, Tcrpdec1 Catalytic Domain In Complex With Inhibitor Wyq16
pdb|3V94|F Chain F, Tcrpdec1 Catalytic Domain In Complex With Inhibitor Wyq16
pdb|3V94|G Chain G, Tcrpdec1 Catalytic Domain In Complex With Inhibitor Wyq16
pdb|3V94|H Chain H, Tcrpdec1 Catalytic Domain In Complex With Inhibitor Wyq16
Length = 345
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 34/77 (44%), Gaps = 8/77 (10%)
Query: 72 VSHILGDTFLKAYDNTGHKKRPEQSNEGYDKDHKNNNREEQDDDMTFDFIIIGAGSAGCV 131
VSH++G T + + T K + S G+D K + E + IGA S G
Sbjct: 204 VSHLIGHTDMSLHSETVAKHGAKLSAGGFDCTCKEDRLEAL--SLLLHAADIGASSRGVA 261
Query: 132 LANRLSEIKKWKVLLLE 148
+A +KW V+L E
Sbjct: 262 IA------RKWLVILQE 272
>pdb|4EFJ|A Chain A, Crystal Structure Of I-Gzemii Laglidadg Homing
Endonuclease In Complex With Dna Target Site
pdb|4EFJ|B Chain B, Crystal Structure Of I-Gzemii Laglidadg Homing
Endonuclease In Complex With Dna Target Site
Length = 300
Score = 28.9 bits (63), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 47/224 (20%), Positives = 84/224 (37%), Gaps = 57/224 (25%)
Query: 128 AGCVLANRLSEIKKWKVLLLEAGIEEPFFADVPGLAPLISRSNIDWNYMTMPEPHACKAR 187
G + + I+ L L + ++E F +P PLI NI P P
Sbjct: 121 VGATVLQEIISIRASMNLGLSSSVKEDFPHIIPSNRPLIENMNI-------PHPE----- 168
Query: 188 PNGRCYWARGKVMGGSSTINYMIYARGNAEDYDEWEAMGNEGWGYDEVLEYFKKSEDNED 247
W G V G S + +Y + D++ ++ F+ S+ N+D
Sbjct: 169 ------WMAGFVSGEGS---FSVYTTSD----DKYVSLS------------FRVSQHNKD 203
Query: 248 KEIYHKNPEYHGKGGYQ------------TVEWLPYADKNLPVLIKAWKEKGYPERDLNA 295
K++ ++ G GG+ T ++ DK +P L +K KG +D
Sbjct: 204 KQLLKSFVDFFGCGGFNYHNKGNKAVIFVTRKFEDINDKIIP-LFNEYKIKGVKYKDFKD 262
Query: 296 ENQIGVMHLQTTTRHGERLSTNGAFIRPIRKKRKNLTILTEAHV 339
+++ M L+TNG + I K ++N+ ++ V
Sbjct: 263 WSKVAKM-----IESKSHLTTNGY--KEICKIKENMNSYRKSSV 299
>pdb|2CKZ|B Chain B, X-Ray Structure Of Rna Polymerase Iii Subcomplex C17-C25.
pdb|2CKZ|D Chain D, X-Ray Structure Of Rna Polymerase Iii Subcomplex C17-C25
Length = 218
Score = 28.9 bits (63), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 32/64 (50%), Gaps = 9/64 (14%)
Query: 467 VFAKTKLADSLDVPDIQFHHDPMSVRDWITNPVNASSTN-MSP-----FAYYDGITVRPI 520
+F +K+AD + +P QFH D +S IT+ +N N + P YD +TV
Sbjct: 1 MFILSKIADLVRIPPDQFHRDTISA---ITHQLNNKFANKIIPNVGLCITIYDLLTVEEG 57
Query: 521 LLKP 524
LKP
Sbjct: 58 QLKP 61
>pdb|3FBS|A Chain A, The Crystal Structure Of The Oxidoreductase From
Agrobacterium Tumefaciens
pdb|3FBS|B Chain B, The Crystal Structure Of The Oxidoreductase From
Agrobacterium Tumefaciens
Length = 297
Score = 28.9 bits (63), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 116 MTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIEEPFFA 157
M FD IIIG AG A +L +K +LL++AG FA
Sbjct: 1 MKFDVIIIGGSYAGLSAALQLGRARK-NILLVDAGERRNRFA 41
>pdb|1FEH|A Chain A, Fe-Only Hydrogenase From Clostridium Pasteurianum
pdb|1C4A|A Chain A, Binding Of Exogenously Added Carbon Monoxide At The Active
Site Of The Fe-Only Hydrogenase (Cpi) From Clostridium
Pasteurianum
pdb|1C4C|A Chain A, Binding Of Exogenously Added Carbon Monoxide At The Active
Site Of The Fe-Only Hydrogenase (Cpi) From Clostridium
Pasteurianum
pdb|3C8Y|A Chain A, 1.39 Angstrom Crystal Structure Of Fe-Only Hydrogenase
Length = 574
Score = 28.9 bits (63), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 12/39 (30%), Positives = 19/39 (48%)
Query: 419 DHLTSDGIVIAFPKTATDRMYKKKVSDAFEYKESRCGPL 457
D L DG++I A + K ++S + E +CGP
Sbjct: 63 DTLIEDGMIINTNSDAVNEKIKSRISQLLDIHEFKCGPC 101
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.135 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,476,985
Number of Sequences: 62578
Number of extensions: 824548
Number of successful extensions: 1743
Number of sequences better than 100.0: 35
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 1676
Number of HSP's gapped (non-prelim): 46
length of query: 567
length of database: 14,973,337
effective HSP length: 104
effective length of query: 463
effective length of database: 8,465,225
effective search space: 3919399175
effective search space used: 3919399175
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.4 bits)