BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1042
(567 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P18173|DHGL_DROME Glucose dehydrogenase [acceptor] OS=Drosophila melanogaster GN=Gld
PE=3 SV=3
Length = 625
Score = 308 bits (788), Expect = 9e-83, Method: Compositional matrix adjust.
Identities = 188/464 (40%), Positives = 256/464 (55%), Gaps = 22/464 (4%)
Query: 101 DKDHKNNNREEQDDDMTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIEEPFFADVP 160
D + ++R + D +DFI+IG GSAG V+A+RLSE+ +WKVLL+EAG +EP A +P
Sbjct: 48 DPCGRASSRFRSEPDYEYDFIVIGGGSAGSVVASRLSEVPQWKVLLIEAGGDEPVGAQIP 107
Query: 161 GLAPLISRSNIDWNYMTMPEPHACKARPNGRCYWARGKVMGGSSTINYMIYARGNAEDYD 220
+ S+ID+ Y T PEP AC + RCYW RGKV+GG+S +N M+Y RGN EDYD
Sbjct: 108 SMFLNFIGSDIDYRYNTEPEPMACLSSMEQRCYWPRGKVLGGTSVLNGMMYVRGNREDYD 167
Query: 221 EWEAMGNEGWGYDEVLEYFKKSEDNEDKEIYHKNPEYHGKGGYQTVEWLPYADKNLPVLI 280
+W A GN GW Y++VL +FKKSEDN D + EYH KGG V PY ++
Sbjct: 168 DWAADGNPGWAYNDVLPFFKKSEDNLDLD--EVGTEYHAKGGLLPVGKFPYNPPLSYAIL 225
Query: 281 KAWKEKGYPERDLNAENQIGVMHLQTTTRHGERLSTNGAFIRPIRKKRKNLTILTEAHVT 340
KA +E G+ DLN +N G M Q T R+G R S+ AF+RP R R NL IL T
Sbjct: 226 KAGEELGFSVHDLNGQNSTGFMIAQMTARNGIRYSSARAFLRPAR-MRNNLHILLNTTAT 284
Query: 341 RIICDKTPNKHKKLVAKSVEFFYKKKLRRARAKKEVISSAGAINSPKILMLSGIGPKDHL 400
+I+ P+ L + + F R+ KKEV+ SAGA+NSP IL+LSG+GPKD L
Sbjct: 285 KILIH--PHTKNVLGVEVSDQF--GSTRKILVKKEVVLSAGAVNSPHILLLSGVGPKDEL 340
Query: 401 TSLNIKTLVDL-KVGHNLQDHLTSDGIVIAFPKTATDRMYKKKV--SDAFEYKESRCGPL 457
+N++T+ +L VG NL +H+T F D + + A EY R G +
Sbjct: 341 QQVNVRTVHNLPGVGKNLHNHVTY------FTNFFIDDADTAPLNWATAMEYLLFRDGLM 394
Query: 458 ASTGPLQCGVFAKTKLADSLDVPDIQFHHDPMSVRDWITNPVNASSTNMSPFAYYDGITV 517
+ TG T+ ADS + PD+Q + T V +N S I +
Sbjct: 395 SGTGISDVTAKLATRYADSPERPDLQLYFGGYLASCARTGQVGELLSNNS-----RSIQI 449
Query: 518 RPILLKPKSRGYIQLNATDPLWGPPLIFPKFFTKKPDLDVFVAG 561
P +L P+SRG+I L + DPL PP I + T + D+ V G
Sbjct: 450 FPAVLNPRSRGFIGLRSADPL-EPPRIVANYLTHEQDVKTLVEG 492
>sp|P18172|DHGL_DROPS Glucose dehydrogenase [acceptor] OS=Drosophila pseudoobscura
pseudoobscura GN=Gld PE=3 SV=4
Length = 625
Score = 304 bits (778), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 189/464 (40%), Positives = 254/464 (54%), Gaps = 22/464 (4%)
Query: 101 DKDHKNNNREEQDDDMTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIEEPFFADVP 160
D + + R + D +DFI+IG GSAG V+A+RLSE+ +WKVLL+EAG +EP A +P
Sbjct: 48 DPCGRASTRFRSEPDYEYDFIVIGGGSAGSVVASRLSEVPQWKVLLIEAGGDEPVGAQIP 107
Query: 161 GLAPLISRSNIDWNYMTMPEPHACKARPNGRCYWARGKVMGGSSTINYMIYARGNAEDYD 220
+ S+ID+ Y T PE AC + RCYW RGKV+GG+S +N M+Y RGN EDYD
Sbjct: 108 SMFLNFIGSDIDYRYNTEPERMACLSSMEQRCYWPRGKVLGGTSVMNGMMYIRGNREDYD 167
Query: 221 EWEAMGNEGWGYDEVLEYFKKSEDNEDKEIYHKNPEYHGKGGYQTVEWLPYADKNLPVLI 280
+W A GN GW Y +VL +FKKSEDN E+ EYH KGG V PY L+
Sbjct: 168 DWAAQGNPGWSYQDVLPFFKKSEDN--LELDAVGTEYHAKGGLLPVGKFPYNPPLSYALL 225
Query: 281 KAWKEKGYPERDLNAENQIGVMHLQTTTRHGERLSTNGAFIRPIRKKRKNLTILTEAHVT 340
KA +E G+ +DLN +N G M Q T R+G R S+ AF+RP R R NL IL VT
Sbjct: 226 KAGEEMGFSVQDLNGQNSTGFMIAQMTARNGIRYSSARAFLRPAR-MRNNLHILLNTTVT 284
Query: 341 RIICDKTPNKHKKLVAKSVEFFYKKKLRRARAKKEVISSAGAINSPKILMLSGIGPKDHL 400
+++ K+ V S +F +R+ KKEVI S GA+NSP+IL+LSG+GPK+ L
Sbjct: 285 KVLIHPG-TKNVVGVEVSDQF---GSMRKILVKKEVIVSGGAVNSPQILLLSGVGPKEDL 340
Query: 401 TSLNIKTLVDL-KVGHNLQDHLTSDGIVIAFPKTATDRMYKKKV--SDAFEYKESRCGPL 457
+N++ + L VG NL +H V F D + + A EY R G +
Sbjct: 341 QKVNVRPVHHLPGVGKNLHNH------VAYFTNFFIDDADTAPLNWATAMEYLLFRDGLM 394
Query: 458 ASTGPLQCGVFAKTKLADSLDVPDIQFHHDPMSVRDWITNPVNASSTNMSPFAYYDGITV 517
+ TG T+ AD ++PD+Q + T V +N S I +
Sbjct: 395 SGTGISDVTAKMATRWADRPNLPDLQLYFGGYLASCARTGQVGELLSNNS-----RAIQI 449
Query: 518 RPILLKPKSRGYIQLNATDPLWGPPLIFPKFFTKKPDLDVFVAG 561
P +L PKSRGYI L + DPL PP IF + T + D+ V G
Sbjct: 450 FPAVLNPKSRGYITLRSADPL-DPPRIFANYLTDERDVKTLVEG 492
>sp|Q47944|SDH_GLUOY L-sorbose 1-dehydrogenase OS=Gluconobacter oxydans PE=3 SV=1
Length = 531
Score = 217 bits (553), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 152/451 (33%), Positives = 226/451 (50%), Gaps = 39/451 (8%)
Query: 118 FDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIEE--PFFADVPGLAPLISRSNIDWNY 175
FD+I++G GSAGCVLA RLSE +V L+EAG + P G A + + + W+
Sbjct: 5 FDYIVVGGGSAGCVLAARLSENPSVRVCLIEAGRRDTHPLIHMPVGFAKMTTGPHT-WDL 63
Query: 176 MTMPEPHACKARPNGRCYWARGKVMGGSSTINYMIYARGNAEDYDEWEAMGNEGWGYDEV 235
+T P+ HA N + + +G+++GG S+IN ++ RG+ D+D W A G +GW + +V
Sbjct: 64 LTEPQKHA----NNRQIPYVQGRILGGGSSINAEVFTRGHPSDFDRWAAEGADGWSFRDV 119
Query: 236 LEYFKKSEDNEDKEIYHKNPEYHGKGGYQTVEWLPYADKNLPVLIKAWKEKGYP-ERDLN 294
+YF +SE N ++ +HG G V L + +++ +E G P D N
Sbjct: 120 QKYFIRSEGN---AVFSGT--WHGTNGPLGVSNLAEPNPTSRAFVQSCQEMGLPYNPDFN 174
Query: 295 AENQIGVMHLQTTTRHGERLSTNGAFIRPIRKKRKNLTILTEAHVTRIICDKTPNKHKKL 354
+Q G Q T R+ R ST ++RP RKNLT++T A V +I+ + T
Sbjct: 175 GASQEGAGIYQMTIRNNRRCSTAVGYLRPA-LGRKNLTVVTRALVLKIVFNGT------- 226
Query: 355 VAKSVEFFYKKKLRRARAKKEVISSAGAINSPKILMLSGIGPKDHLTSLNIKTLVDL-KV 413
A V++ L A A +E++ +AGAI +PK++MLSG+GP HL I + DL V
Sbjct: 227 RATGVQYIANGTLNTAEASQEIVVTAGAIGTPKLMMLSGVGPAAHLRENGIPVVQDLPGV 286
Query: 414 GHNLQDHLTSDGIVIAFPKTATDRMYKK---KVSDAFEYKESRCGPLASTGPLQCGVFAK 470
G NLQDH D IV + Y+K + EY R GP+AS ++ G F
Sbjct: 287 GENLQDHFGVD-IVAELKTDESFDKYRKLHWMLWAGLEYTMFRSGPVASN-VVEGGAFWY 344
Query: 471 TKLADSLDVPDIQFHHDPMSVRDWITNPVNASSTNMSPFAYYDGITVRPILLKPKSRGYI 530
+ S VPD+QFH A + S GIT+ +L+PKSRG +
Sbjct: 345 SD--PSSGVPDLQFH---------FLAEAGAEAGVTSVPKGASGITLNSYVLRPKSRGTV 393
Query: 531 QLNATDPLWGPPLIFPKFFTKKPDLDVFVAG 561
+L + DP P++ P F DL+ G
Sbjct: 394 RLRSADPRVN-PMVDPNFLGDPADLETSAEG 423
>sp|Q9WWW2|ALKJ_PSEPU Alcohol dehydrogenase [acceptor] OS=Pseudomonas putida GN=alkJ PE=3
SV=1
Length = 552
Score = 216 bits (550), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 164/462 (35%), Positives = 229/462 (49%), Gaps = 58/462 (12%)
Query: 118 FDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIEE--PFFADVPGLAPLISRSNIDWNY 175
+D+II+GAGSAGCVLANRLS +V LLEAG + P G+A L + ++W +
Sbjct: 2 YDYIIVGAGSAGCVLANRLSADPSKRVCLLEAGPRDTNPLIHMPLGIALLSNSKKLNWAF 61
Query: 176 MTMPEPHACKARPNGR-CYWARGKVMGGSSTINYMIYARGNAEDYDEWEAMGNEGWGYDE 234
T P+ H N R +W RGK +GGSS+IN M+Y RG+ EDY WE G E WG+
Sbjct: 62 QTAPQQHL-----NERSLFWPRGKTLGGSSSINAMVYIRGHEEDYQAWEQAGGEYWGWKR 116
Query: 235 VLEYFKKSEDNE--DKEIYHKNPEYHGKGGYQTVEWLPYADKNLPVLIKAWKEKGYPER- 291
FKK E N+ DK YHG G V L K+L L K++ + G +
Sbjct: 117 AFALFKKLEHNQRFDKS------NYHGTDGELAVSDL----KDLNPLSKSFVQAGMEAKI 166
Query: 292 ----DLNAENQIGVMHLQTTTRHGERLSTNGAFIRPIRKKRKNLTILTEAHVTRIICDKT 347
D N +Q GV Q T +HG+R S+ AF+ + R NL I+TEAH T+++ +
Sbjct: 167 SFNGDFNGAHQEGVGFYQVTQKHGQRWSSARAFLHDV-IDRPNLDIITEAHATKVLFEDR 225
Query: 348 PNKHKKLVAKSVEFFYKKKLRRARAKK----EVISSAGAINSPKILMLSGIGPKDHLTSL 403
K+V Y +K + K EVI S GA+N+P++LMLSG+G L
Sbjct: 226 ---------KAVGVSYIQKNMHQQVKTTDSGEVILSLGAVNTPQLLMLSGVGAAAELKEH 276
Query: 404 NIKTLVDL-KVGHNLQDHLTSDGIVIAFPKTATDRMYK---KKVSDAFEYKESRCGPLAS 459
I + DL +VG NLQDHL + A +T + + + F Y R G L S
Sbjct: 277 GIALVHDLPEVGKNLQDHLDITLMCAANSRTPIGVAFSFIPRGLVGLFSYIFKRKGFLTS 336
Query: 460 TGPLQCGVFAKTKLADSLDVPDIQFHHDPMSVRDWITNPVNASSTNMSPFAYYDGITVRP 519
+ G F K+ + D P++QFH P ++D + A G T+
Sbjct: 337 N-VAESGGFVKS--SPERDRPNLQFHFLPTYLKD-----------HGRKIAVGYGYTLHI 382
Query: 520 ILLKPKSRGYIQLNATDPLWGPPLIFPKFFTKKPDLDVFVAG 561
L PKSRG I L + +P+ PLI P + + D+ +AG
Sbjct: 383 CDLLPKSRGRIGLKSANPM-DDPLIDPNYLSDPEDIKTMIAG 423
>sp|Q00593|ALKJ_PSEOL Alcohol dehydrogenase [acceptor] OS=Pseudomonas oleovorans GN=alkJ
PE=1 SV=1
Length = 558
Score = 210 bits (534), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 161/458 (35%), Positives = 225/458 (49%), Gaps = 50/458 (10%)
Query: 118 FDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIEE--PFFADVPGLAPLISRSNIDWNY 175
+D+II+GAGSAGCVLANRLS +V LLEAG + P G+A L + ++W +
Sbjct: 2 YDYIIVGAGSAGCVLANRLSADPSKRVCLLEAGPRDTNPLIHMPLGIALLSNSKKLNWAF 61
Query: 176 MTMPEPHACKARPNGR-CYWARGKVMGGSSTINYMIYARGNAEDYDEWEAMGNEGWGYDE 234
T P+ + NGR +W RGK +GGSS+IN M+Y RG+ +DY WE WG+
Sbjct: 62 QTAPQQNL-----NGRSLFWPRGKTLGGSSSINAMVYIRGHEDDYHAWEQAAGRYWGWYR 116
Query: 235 VLEYFKKSEDNE--DKEIYHKNPEYHGKGGYQTVEWLPYADKNLPVLIKAWKEKGYP-ER 291
LE FK+ E N+ DK E+HG G V L Y + ++A E
Sbjct: 117 ALELFKRLECNQRFDKS------EHHGVDGELAVSDLKYINPLSKAFVQAGMEANINFNG 170
Query: 292 DLNAENQIGVMHLQTTTRHGERLSTNGAFIRPIRKKRKNLTILTEAHVTRIICDKTPNKH 351
D N E Q GV Q T ++G+R S+ AF+ + R NL I+T+AH ++I+ +
Sbjct: 171 DFNGEYQDGVGFYQVTQKNGQRWSSARAFLHGVL-SRPNLDIITDAHASKILFEDR---- 225
Query: 352 KKLVAKSVEFFYKKKLRRARAKK----EVISSAGAINSPKILMLSGIGPKDHLTSLNIKT 407
K+V Y KK + K EV+ S GA+ +P +LMLSG+G L +
Sbjct: 226 -----KAVGVSYIKKNMHHQVKTTSGGEVLLSLGAVGTPHLLMLSGVGAAAELKEHGVSL 280
Query: 408 LVDL-KVGHNLQDHLTSDGIVIAF---PKTATDRMYKKKVSDAFEYKESRCGPLASTGPL 463
+ DL +VG NLQDHL + A P + VS F Y R G L S
Sbjct: 281 VHDLPEVGKNLQDHLDITLMCAANSREPIGVALSFIPRGVSGLFSYVFKREGFLTSN-VA 339
Query: 464 QCGVFAKTKLADSLDVPDIQFHHDPMSVRDWITNPVNASSTNMSPFAYYDGITVRPILLK 523
+ G F K+ + D P++QFH P ++D + A G T+ L
Sbjct: 340 ESGGFVKS--SPDRDRPNLQFHFLPTYLKD-----------HGRKIAGGYGYTLHICDLL 386
Query: 524 PKSRGYIQLNATDPLWGPPLIFPKFFTKKPDLDVFVAG 561
PKSRG I L + +PL PPLI P + + D+ +AG
Sbjct: 387 PKSRGRIGLKSANPLQ-PPLIDPNYLSDHEDIKTMIAG 423
>sp|P64264|Y1310_MYCBO Uncharacterized GMC-type oxidoreductase Mb1310 OS=Mycobacterium
bovis (strain ATCC BAA-935 / AF2122/97) GN=Mb1310 PE=3
SV=1
Length = 528
Score = 207 bits (527), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 150/445 (33%), Positives = 217/445 (48%), Gaps = 35/445 (7%)
Query: 115 DMTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIEEP-FFADVPGLAPLISRSNIDW 173
D D++++G GSAG V+A+RLS V+ LEAG + F VP + RS IDW
Sbjct: 2 DTQSDYVVVGTGSAGAVVASRLSTDPATTVVALEAGPRDKNRFIGVPAAFSKLFRSEIDW 61
Query: 174 NYMTMPEPHACKARPNGR-CYWARGKVMGGSSTINYMIYARGNAEDYDEWEAMGNEGWGY 232
+Y+T P+P +GR YW RGKV+GGSS++N M++ RG A DYDEW A W Y
Sbjct: 62 DYLTEPQPEL-----DGREIYWPRGKVLGGSSSMNAMMWVRGFASDYDEWAARAGPRWSY 116
Query: 233 DEVLEYFKKSEDNEDKEIYHKNPEYHGKGGYQTVEWLPYADKNLPVLIKAWKEKGYPERD 292
+VL YF++ E N + + + G G + + A +E G+
Sbjct: 117 ADVLGYFRRIE-NVTAAWHFVSGDDSGVTGPLHISRQRSPRSVTAAWLAAARECGFAAAR 175
Query: 293 LNAENQIGVMHLQTTTRHGERLSTNGAFIRPIRKKRKNLTILTEAHVTRIICDKTPNKHK 352
N+ G T R G R ST A+++P +RKNL +LT A TR++ D
Sbjct: 176 PNSPRPEGFCETVVTQRRGARFSTADAYLKPA-MRRKNLRVLTGATATRVVIDGD----- 229
Query: 353 KLVAKSVEFFYKKKLRRARAKKEVISSAGAINSPKILMLSGIGPKDHLTSLNIKTLVDL- 411
A VE+ + R A++EV+ AGA+NSP++LMLSGIG +DHL +I T+
Sbjct: 230 --RAVGVEYQSDGQTRIVYARREVVLCAGAVNSPQLLMLSGIGDRDHLAEHDIDTVYHAP 287
Query: 412 KVGHNLQDHLTSDGIVIAFPKTATDRMYKKKVSDAFEYKESRCGPLASTGPLQCGVFAKT 471
+VG NL DHL + V+ F +K Y R G L S G F ++
Sbjct: 288 EVGCNLLDHLVT---VLGFDVEKDSLFAAEKPGQLISYLLRRRGMLTSNVGEAYG-FVRS 343
Query: 472 KLADSLDVPDIQFHHDPMSVRDWITNPVNASSTNMSPFAYYDGITVRPILLKPKSRGYIQ 531
+ L +PD++ P D P P + G+ PIL+ P+SRG I
Sbjct: 344 R--PELKLPDLELIFAPAPFYDEALVP---------PAGH--GVVFGPILVAPQSRGQIT 390
Query: 532 LNATDPLWGPPLIFPKFFTKKPDLD 556
L + DP P+I P++ + +D
Sbjct: 391 LRSADP-HAKPVIEPRYLSDLGGVD 414
>sp|P64263|Y1279_MYCTU Uncharacterized GMC-type oxidoreductase Rv1279/MT1316
OS=Mycobacterium tuberculosis GN=Rv1279 PE=3 SV=1
Length = 528
Score = 207 bits (527), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 150/445 (33%), Positives = 217/445 (48%), Gaps = 35/445 (7%)
Query: 115 DMTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIEEP-FFADVPGLAPLISRSNIDW 173
D D++++G GSAG V+A+RLS V+ LEAG + F VP + RS IDW
Sbjct: 2 DTQSDYVVVGTGSAGAVVASRLSTDPATTVVALEAGPRDKNRFIGVPAAFSKLFRSEIDW 61
Query: 174 NYMTMPEPHACKARPNGR-CYWARGKVMGGSSTINYMIYARGNAEDYDEWEAMGNEGWGY 232
+Y+T P+P +GR YW RGKV+GGSS++N M++ RG A DYDEW A W Y
Sbjct: 62 DYLTEPQPEL-----DGREIYWPRGKVLGGSSSMNAMMWVRGFASDYDEWAARAGPRWSY 116
Query: 233 DEVLEYFKKSEDNEDKEIYHKNPEYHGKGGYQTVEWLPYADKNLPVLIKAWKEKGYPERD 292
+VL YF++ E N + + + G G + + A +E G+
Sbjct: 117 ADVLGYFRRIE-NVTAAWHFVSGDDSGVTGPLHISRQRSPRSVTAAWLAAARECGFAAAR 175
Query: 293 LNAENQIGVMHLQTTTRHGERLSTNGAFIRPIRKKRKNLTILTEAHVTRIICDKTPNKHK 352
N+ G T R G R ST A+++P +RKNL +LT A TR++ D
Sbjct: 176 PNSPRPEGFCETVVTQRRGARFSTADAYLKPA-MRRKNLRVLTGATATRVVIDGD----- 229
Query: 353 KLVAKSVEFFYKKKLRRARAKKEVISSAGAINSPKILMLSGIGPKDHLTSLNIKTLVDL- 411
A VE+ + R A++EV+ AGA+NSP++LMLSGIG +DHL +I T+
Sbjct: 230 --RAVGVEYQSDGQTRIVYARREVVLCAGAVNSPQLLMLSGIGDRDHLAEHDIDTVYHAP 287
Query: 412 KVGHNLQDHLTSDGIVIAFPKTATDRMYKKKVSDAFEYKESRCGPLASTGPLQCGVFAKT 471
+VG NL DHL + V+ F +K Y R G L S G F ++
Sbjct: 288 EVGCNLLDHLVT---VLGFDVEKDSLFAAEKPGQLISYLLRRRGMLTSNVGEAYG-FVRS 343
Query: 472 KLADSLDVPDIQFHHDPMSVRDWITNPVNASSTNMSPFAYYDGITVRPILLKPKSRGYIQ 531
+ L +PD++ P D P P + G+ PIL+ P+SRG I
Sbjct: 344 R--PELKLPDLELIFAPAPFYDEALVP---------PAGH--GVVFGPILVAPQSRGQIT 390
Query: 532 LNATDPLWGPPLIFPKFFTKKPDLD 556
L + DP P+I P++ + +D
Sbjct: 391 LRSADP-HAKPVIEPRYLSDLGGVD 414
>sp|Q6UPE0|CHDH_RAT Choline dehydrogenase, mitochondrial OS=Rattus norvegicus GN=Chdh
PE=1 SV=1
Length = 599
Score = 200 bits (509), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 154/461 (33%), Positives = 224/461 (48%), Gaps = 59/461 (12%)
Query: 118 FDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIEEPFFAD--------VPG-LAPLISR 168
+ FI++GAGSAGCVLANRL+E +VLLLEAG ++ +P L +
Sbjct: 46 YTFIVVGAGSAGCVLANRLTEDPNHRVLLLEAGPKDLLMGSKRLQWKIHMPAALVANLCD 105
Query: 169 SNIDWNYMTMPEPHACKARPNGRC-YWARGKVMGGSSTINYMIYARGNAEDYDEWEAMGN 227
+W Y T +P +GR YW RG+V GGSS++N M+Y RG+AEDY+ W G
Sbjct: 106 DKYNWYYHTEAQPGL-----DGRVLYWPRGRVWGGSSSLNAMVYIRGHAEDYNRWHRQGA 160
Query: 228 EGWGYDEVLEYFKKSEDNEDKEIYHKNPEYHGKGGYQTVEWLPYADKNLPV---LIKAWK 284
EGW Y L YF+K++ +E Y G G V N P+ ++A +
Sbjct: 161 EGWDYAHCLPYFRKAQKHELGANM-----YRGGDGPLHVS---RGKTNHPLHQAFLQAAR 212
Query: 285 EKGYP-ERDLNAENQIGVMHLQTTTRHGERLSTNGAFIRPIRKKRKNLTILTEAHVTRII 343
+ GYP D+N Q G + T G+R ST A++RP R NL + V+R++
Sbjct: 213 QAGYPFTEDMNGFQQEGFGWMDMTIHQGKRWSTASAYLRPAL-SRPNLRAEVQTLVSRVL 271
Query: 344 CDKTPNKHKKLVAKSVEFFYKKKLRRARAKKEVISSAGAINSPKILMLSGIGPKDHLTSL 403
+ T A VE+ + +A +EVI S GAINSP++LMLSG+G D L L
Sbjct: 272 FEGT-------RAVGVEYIKDGQSHKAYVSREVILSGGAINSPQLLMLSGVGNADDLKKL 324
Query: 404 NIKTLVDLK-VGHNLQDHLTSDGIVIAFPKTATDRMYK-----KKVSDAFEYKESRCGPL 457
I + L VG NLQDHL I I T ++ +KV E+ G
Sbjct: 325 GIPVVCHLPGVGQNLQDHLE---IYIQHACTQPITLHSAQKPLRKVCIGLEWLWRFTGD- 380
Query: 458 ASTGPLQCGVFAKTKLADSLDVPDIQFHHDPMSVRDWITNPVNASSTNMSPFAYYDGITV 517
+T L+ G F +++ + PDIQFH P V D P T + + G
Sbjct: 381 GATAHLETGGFIRSR--PGVPHPDIQFHFLPSQVIDHGRKP-----TQQEAYQVHVGT-- 431
Query: 518 RPILLKPKSRGYIQLNATDPLWGPPLIFPKFFTKKPDLDVF 558
++ S G+++L +T+P P+I P + + + D++ F
Sbjct: 432 ----MRATSVGWLKLRSTNPQ-DHPMINPNYLSTETDVEDF 467
>sp|Q8BJ64|CHDH_MOUSE Choline dehydrogenase, mitochondrial OS=Mus musculus GN=Chdh PE=1
SV=1
Length = 596
Score = 197 bits (500), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 149/460 (32%), Positives = 225/460 (48%), Gaps = 57/460 (12%)
Query: 118 FDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIEEPFFAD------VPGLAPLISR--- 168
+ F+++GAGSAGCVLA+RL+E +VLLLEAG ++ + A L+S
Sbjct: 43 YTFVVVGAGSAGCVLASRLTEDPNHRVLLLEAGPKDLLMGSKRLQWKIHMPAALVSNLCD 102
Query: 169 SNIDWNYMTMPEPHACKARPNGRCYWARGKVMGGSSTINYMIYARGNAEDYDEWEAMGNE 228
+W Y T P+P + YW RG+V GGSS++N M+Y RG+AEDY+ W G E
Sbjct: 103 DKYNWYYHTEPQP----GMDSRVLYWPRGRVWGGSSSLNAMVYIRGHAEDYNRWHREGAE 158
Query: 229 GWGYDEVLEYFKKSEDNEDKEIYHKNPEYHGKGGYQTVEWLPYADKNLPV---LIKAWKE 285
GW Y L YF+K++ +E Y G G V N P+ ++A ++
Sbjct: 159 GWDYAHCLPYFRKAQRHELGANM-----YRGGDGPLHVS---RGKTNHPLHQAFLQAARQ 210
Query: 286 KGYP-ERDLNAENQIGVMHLQTTTRHGERLSTNGAFIRPIRKKRKNLTILTEAHVTRIIC 344
GYP D+N Q G + T G+R ST A++ P+ R NL + V+R++
Sbjct: 211 AGYPFTEDMNGFQQEGFGWMDMTVHQGKRWSTACAYLHPV-LSRPNLRAEVQTLVSRVLF 269
Query: 345 DKTPNKHKKLVAKSVEFFYKKKLRRARAKKEVISSAGAINSPKILMLSGIGPKDHLTSLN 404
+ T A VE+ + +A +EVI S GAINSP++LMLSG+G D L L+
Sbjct: 270 EGT-------RAVGVEYIKDGQRHKAYVSREVILSGGAINSPQLLMLSGVGNADDLRKLD 322
Query: 405 IKTLVDLK-VGHNLQDHLTSDGIVIAFPKTATDRMYK-----KKVSDAFEYKESRCGPLA 458
I + L VG NLQDHL + + T ++ +KV E+ S G
Sbjct: 323 IPVVCHLPGVGQNLQDHLE---VYVQQACTQPITLHSAQKPLRKVCIGLEWLWSYTGD-G 378
Query: 459 STGPLQCGVFAKTKLADSLDVPDIQFHHDPMSVRDWITNPVNASSTNMSPFAYYDGITVR 518
+T L+ G F +++ + PDIQFH P V D P T + + G
Sbjct: 379 ATAHLETGGFIRSR--PGVPHPDIQFHFLPSQVIDHGRKP-----TQQEAYQVHVGT--- 428
Query: 519 PILLKPKSRGYIQLNATDPLWGPPLIFPKFFTKKPDLDVF 558
++ S G+++L + +P P+I P + + + D++ F
Sbjct: 429 ---MRATSVGWLKLRSANPR-DHPVIHPNYLSTETDVEDF 464
>sp|Q985M5|BETA_RHILO Choline dehydrogenase OS=Rhizobium loti (strain MAFF303099) GN=betA
PE=3 SV=1
Length = 550
Score = 196 bits (497), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 144/439 (32%), Positives = 216/439 (49%), Gaps = 50/439 (11%)
Query: 119 DFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIEE--PFFADVPGLAPLISRSNIDWNYM 176
DF+IIG+GSAG +A RLSE K V+++E G + P L+ ++ S DW +
Sbjct: 5 DFVIIGSGSAGSAMAYRLSEDGKHSVIVIEFGGSDIGPLIQMPSALSIPLNMSLYDWGFA 64
Query: 177 TMPEPHACKARPNGRCYWA-RGKVMGGSSTINYMIYARGNAEDYDEWEAMGNEGWGYDEV 235
+ PEPH GR RGKV+GGSS+IN M+Y RG+A D+D W G GWG+ +V
Sbjct: 65 SEPEPHL-----GGRVLATPRGKVIGGSSSINGMVYVRGHARDFDHWAEEGATGWGFADV 119
Query: 236 LEYFKKSEDNEDKEIYHKNPEYHGKGGYQTVEWLPYADKNLPVLIKAWKEKGYP-ERDLN 294
L YFK+ EDN+ E + G GG V+ + ++A ++ G+ D N
Sbjct: 120 LPYFKRMEDNDGGE-----DGWRGHGGPLHVQRGSRKNPLYGAFVEAGRQAGFELTDDYN 174
Query: 295 AENQIGVMHLQTTTRHGERLSTNGAFIRPIRKKRKNLTILTEAHVTRIICDKTPNKHKKL 354
Q G ++ T G R S A+++P KRKN++ L + R+I +
Sbjct: 175 GSKQEGFGPMEQTISGGRRWSAASAYLKPA-LKRKNVS-LVKGFARRVIIENQ------- 225
Query: 355 VAKSVEFFYKKKLRRARAKKEVISSAGAINSPKILMLSGIGPKDHLTSLNIKTLVDL-KV 413
A VE K+++ +A++EVI +A +INSPKILMLSGIGP +HL I + D V
Sbjct: 226 RAIGVEIEAHKQIQVVKARREVIVAASSINSPKILMLSGIGPAEHLRENGIAVVADRPGV 285
Query: 414 GHNLQDHLTSDGIVIAFPKTATDRMYKKKVSDAF-------EYKESRCGPLASTGPLQCG 466
G NLQDH+ + + +T + V + F ++ + G L +T +
Sbjct: 286 GRNLQDHME-----LYIQQESTKPITLNSVLNPFSKALIGAQWLFFKSG-LGATNHFEAA 339
Query: 467 VFAKTKLADSLDVPDIQFHHDPMSVRDWITNPVNASSTNMSPFAYYDGITVRPILLKPKS 526
F +++ +D PDIQ+H P +VR + A G ++ KS
Sbjct: 340 AFVRSRAG--VDYPDIQYHFIPAAVR-----------YDGKAAAKSHGFQAHVGPMRSKS 386
Query: 527 RGYIQLNATDPLWGPPLIF 545
RG + L + DP P + F
Sbjct: 387 RGSVTLRSPDPKAKPVIRF 405
>sp|C3MIE4|BETA_RHISN Choline dehydrogenase OS=Rhizobium sp. (strain NGR234) GN=betA PE=3
SV=1
Length = 549
Score = 195 bits (496), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 149/442 (33%), Positives = 221/442 (50%), Gaps = 50/442 (11%)
Query: 116 MTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIEE--PFFADVPGLAPLISRSNIDW 173
M D+IIIG+GSAG LA+RLSE + V++LE G + PF LA +S + +W
Sbjct: 1 MQADYIIIGSGSAGSALAHRLSEDSRNSVIVLEFGGTDIGPFIQMPAALAWPMSMNRYNW 60
Query: 174 NYMTMPEPHACKARPNGRCYWARGKVMGGSSTINYMIYARGNAEDYDEWEAMGNEGWGYD 233
Y++ PEPH N R RGKV+GGSS+IN M+Y RG+AED+D WE +G +GW Y
Sbjct: 61 GYLSEPEPHLN----NRRITAPRGKVIGGSSSINGMVYVRGHAEDFDRWEQLGAKGWAYA 116
Query: 234 EVLEYFKKSEDNEDKEIYHKNPEYHGKGGYQTVEWLPYADKNLPVLIKAWKEKGYPER-D 292
+VL YFK+ E + E + G G V+ P + ++A K+ G+ D
Sbjct: 117 DVLPYFKRMEHSHGGE-----DGWRGTDGPLHVQRGPVKNPLFHAFVEAGKQAGFEMTDD 171
Query: 293 LNAENQIGVMHLQTTTRHGERLSTNGAFIRPIRKKRKNLTILTEAHVTRIICDKTPNKHK 352
N Q G ++ TT G R S A+++P KR N+ ++ R K ++
Sbjct: 172 YNGSKQEGFGLMEQTTWRGRRWSAASAYLKPA-LKRPNVQLI------RCFARKIVIENG 224
Query: 353 KLVAKSVEFFYKKKLRRARAKKEVISSAGAINSPKILMLSGIGPKDHLTSLNIKTLVDL- 411
+ A VE ++ +A +EVI SA + NSPK+LMLSGIGP HL L I VD
Sbjct: 225 R--ATGVEIERGGRIEVVKANREVIVSASSFNSPKLLMLSGIGPAAHLKDLGIDVKVDRP 282
Query: 412 KVGHNLQDHLTSDGIVIAFPKTATDRM--------YKKKVSDAFEYKESRCGPLASTGPL 463
VG NLQDH+ F + +T + + + V+ A ++ + G L +
Sbjct: 283 GVGQNLQDHME-----FYFQQISTKPVSLYSWLPWFWQGVAGA-QWLFFKSG-LGISNQF 335
Query: 464 QCGVFAKTKLADSLDVPDIQFHHDPMSVRDWITNPVNASSTNMSPFAYYDGITVRPILLK 523
+ F ++ A + PDIQ+H P+++R ++ N F + G +
Sbjct: 336 EACAFLRS--APGVKQPDIQYHFLPVAIRY-----DGKAAANTHGFQVHVGYNLS----- 383
Query: 524 PKSRGYIQLNATDPLWGPPLIF 545
KSRG + L A+DP P + F
Sbjct: 384 -KSRGSVTLRASDPKADPVIRF 404
>sp|Q7MF12|BETA_VIBVY Choline dehydrogenase OS=Vibrio vulnificus (strain YJ016) GN=betA
PE=3 SV=1
Length = 560
Score = 195 bits (495), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 161/452 (35%), Positives = 230/452 (50%), Gaps = 57/452 (12%)
Query: 118 FDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAG-IEEPFFADVP-GLAPLISRSNIDWNY 175
+D+II+GAGSAGCVLA+RLSE VLLLEAG ++ F +P L+ ++ W +
Sbjct: 5 YDYIIVGAGSAGCVLADRLSESGDHSVLLLEAGGSDKSIFIQMPTALSYPMNSEKYAWQF 64
Query: 176 MTMPEPHACKARPNGR-CYWARGKVMGGSSTINYMIYARGNAEDYDEWEAMGNEGWGYDE 234
T E A +GR + RGKV+GGSS+IN M+Y RG+A D+DEWE G +GW Y
Sbjct: 65 ETDAE-----ADLDGRRLHCPRGKVLGGSSSINGMVYVRGHACDFDEWEEQGAKGWNYQA 119
Query: 235 VLEYFKKSE---DNEDKEIYHKNPEYHGKGGYQTVEWLPYADKNLPVLIKAWKEKGYPE- 290
L YF+++E D ED+ P G T+ L A I A KE GYPE
Sbjct: 120 CLPYFRRAENWIDGEDEYRGGDGPLSTCAGNKMTLNPLYRA------FIDAGKEAGYPET 173
Query: 291 RDLNAENQIGVMHLQTTTRHGERLSTNGAFIRPIRKKRKNLTILTEAHVTRIICDKTPNK 350
D N Q G + T ++G R ST+ A++ KKR N ++ V RI+ ++
Sbjct: 174 SDYNGYQQEGFGPMHMTVKNGVRASTSNAYLSRA-KKRSNFKLIKGVVVQRILLEE---- 228
Query: 351 HKKLVAKSVEFFYKKKLRRARAKKEVISSAGAINSPKILMLSGIGPKDHLTSLNIKTLVD 410
K+ V VEF +LR AK EVISSAG+I S ++L LSGIGPK L + +
Sbjct: 229 -KRAVG--VEFELAGELRTCFAKNEVISSAGSIGSVQLLQLSGIGPKTVLEKAGVTPVYH 285
Query: 411 L-KVGHNLQDHLTSDGIVIAF----PKTATDRM-YKKKVSDAFEYKESRCGPLASTGPLQ 464
L VG NLQDHL + + P T ++ + K E+ +R G L +T +
Sbjct: 286 LPGVGQNLQDHLE---VYFQYHCQKPITLNGKLDWFSKGLIGTEWILTRKG-LGATNHFE 341
Query: 465 CGVFAKTKLADSLDVPDIQFHHDPMSVRDWITNPVNASSTNMSPFAYYDG----ITVRPI 520
F +++ L P+IQ+H P ++R A +DG + V P
Sbjct: 342 SCAFIRSRAG--LKWPNIQYHFLPAAMR-------------YDGQAAFDGHGFQVHVGPN 386
Query: 521 LLKPKSRGYIQLNATDPLWGPPLIFPKFFTKK 552
KP+SRG +++ + +PL P + F T++
Sbjct: 387 --KPESRGRVEIVSANPLDKPKIQFNYLSTER 416
>sp|B5ZUG2|BETA_RHILW Choline dehydrogenase OS=Rhizobium leguminosarum bv. trifolii
(strain WSM2304) GN=betA PE=3 SV=1
Length = 549
Score = 194 bits (493), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 150/442 (33%), Positives = 217/442 (49%), Gaps = 50/442 (11%)
Query: 116 MTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIEE--PFFADVPGLAPLISRSNIDW 173
M DF+IIG+GSAG LA RLSE K VL++EAG + PF LA +S +W
Sbjct: 1 MQADFVIIGSGSAGSALAYRLSEDGKNSVLVIEAGGSDFGPFIQMPAALAWPMSMKRYNW 60
Query: 174 NYMTMPEPHACKARPNGRCYWARGKVMGGSSTINYMIYARGNAEDYDEWEAMGNEGWGYD 233
Y++ PEP+ N R RGKV+GGSS+IN M+Y RG+AED++ WE +G GW Y
Sbjct: 61 GYLSEPEPNLN----NRRITAPRGKVIGGSSSINGMVYVRGHAEDFNRWEELGAGGWAYA 116
Query: 234 EVLEYFKKSEDNEDKEIYHKNPEYHGKGGYQTVEWLPYADKNLPVLIKAWKEKGY-PERD 292
+VL YFK+ E + E + G G V+ + + ++A K+ G+ D
Sbjct: 117 DVLPYFKRMEHSHGGE-----EGWRGTDGPLHVQRGGFTNPLFRAFVEAGKQAGFETTED 171
Query: 293 LNAENQIGVMHLQTTTRHGERLSTNGAFIRPIRKKRKNLTILTEAHVTRIICDKTPNKHK 352
N Q G ++ T G R S A+++P KRKN+ I+ RI+ +
Sbjct: 172 YNGSKQEGFGLMEQTIFSGRRWSAANAYLKPAL-KRKNVEIIY-GFAQRIVIEDG----- 224
Query: 353 KLVAKSVEFFYKKKLRRARAKKEVISSAGAINSPKILMLSGIGPKDHLTSLNIKTLVDL- 411
A VE K+ +A +EVI SA + NSPK+LMLSGIGP +HL + I+ D
Sbjct: 225 --RATGVEIERGGKIEVVKANREVIVSASSFNSPKLLMLSGIGPGEHLKEMGIEVKADRP 282
Query: 412 KVGHNLQDHLTSDGIVIAFPKTATDRM--------YKKKVSDAFEYKESRCGPLASTGPL 463
VG NLQDH+ F + +T + + + V+ A ++ S+ G L ++
Sbjct: 283 GVGANLQDHME-----FYFQQVSTKPVSLYSWLPWFWQGVAGA-QWLLSKGG-LGASNQF 335
Query: 464 QCGVFAKTKLADSLDVPDIQFHHDPMSVRDWITNPVNASSTNMSPFAYYDGITVRPILLK 523
+ F ++ A L PDIQ+H P+++ S + A G V
Sbjct: 336 EACAFLRS--APGLKQPDIQYHFLPVAI-----------SYDGKAAAKSHGFQVHVGYNL 382
Query: 524 PKSRGYIQLNATDPLWGPPLIF 545
KSRG + L + DP P L F
Sbjct: 383 SKSRGSVTLRSPDPKADPVLRF 404
>sp|Q8D3K2|BETA_VIBVU Choline dehydrogenase OS=Vibrio vulnificus (strain CMCP6) GN=betA
PE=3 SV=1
Length = 560
Score = 192 bits (488), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 161/453 (35%), Positives = 231/453 (50%), Gaps = 59/453 (13%)
Query: 118 FDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAG-IEEPFFADVP-GLAPLISRSNIDWNY 175
+D+II+GAGSAGCVLA+RLSE VLLLEAG ++ F +P L+ ++ W +
Sbjct: 5 YDYIIVGAGSAGCVLADRLSESGDHSVLLLEAGGSDKSIFIQMPTALSYPMNSEKYAWQF 64
Query: 176 MTMPEPHACKARPNGR-CYWARGKVMGGSSTINYMIYARGNAEDYDEWEAMGNEGWGYDE 234
T E A +GR + RGKV+GGSS+IN M+Y RG+A D+DEWE G +GW Y
Sbjct: 65 ETDAE-----ADLDGRRLHCPRGKVLGGSSSINGMVYVRGHACDFDEWEEQGAKGWNYQA 119
Query: 235 VLEYFKKSE---DNEDKEIYHKNPEYHGKGGYQTVEWLPYADKNLPVLIKAWKEKGYPE- 290
L YF+++E D ED+ P G T+ L A I A KE GYPE
Sbjct: 120 CLPYFRRAENWIDGEDEYRGGDGPLSTCAGNKMTLNPLYRA------FIDAGKEAGYPET 173
Query: 291 RDLNAENQIGVMHLQTTTRHGERLSTNGAFIRPIRKKRKNLTILTEAHVTRIICDKTPNK 350
D N Q G + T ++G R ST+ A++ KKR N ++ V RI+ ++
Sbjct: 174 SDYNGYQQEGFGPMHMTVKNGVRASTSNAYLSRA-KKRSNFKLIKGVVVQRILLEE---- 228
Query: 351 HKKLVAKSVEFFYKKKLRRARAKKEVISSAGAINSPKILMLSGIGPKDHLTSLNIKTLVD 410
K+ V VEF +LR AK EVISSAG+I S ++L LSGIGPK L + +
Sbjct: 229 -KRAVG--VEFELAGELRTCFAKNEVISSAGSIGSVQLLQLSGIGPKTVLEKAGVTPVHH 285
Query: 411 L-KVGHNLQDHLTSDGIVIAF----PKTATDRM--YKKKVSDAFEYKESRCGPLASTGPL 463
L VG NLQDHL + + P T ++ + K + A E+ +R G L +T
Sbjct: 286 LPGVGQNLQDHLE---VYFQYHCQKPITLNGKLDWFSKGLIGA-EWILTRKG-LGATNHF 340
Query: 464 QCGVFAKTKLADSLDVPDIQFHHDPMSVRDWITNPVNASSTNMSPFAYYDG----ITVRP 519
+ F +++ L P+IQ+H P ++R A +DG + V P
Sbjct: 341 ESCAFIRSRAG--LKWPNIQYHFLPAAMR-------------YDGQAAFDGHGFQVHVGP 385
Query: 520 ILLKPKSRGYIQLNATDPLWGPPLIFPKFFTKK 552
KP+SRG +++ + +P P + F T++
Sbjct: 386 N--KPESRGRVEIVSANPSDKPKIQFNYLSTER 416
>sp|B3PTE0|BETA_RHIE6 Choline dehydrogenase OS=Rhizobium etli (strain CIAT 652) GN=betA
PE=3 SV=1
Length = 549
Score = 191 bits (486), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 150/442 (33%), Positives = 214/442 (48%), Gaps = 50/442 (11%)
Query: 116 MTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIEE--PFFADVPGLAPLISRSNIDW 173
M DF+IIG+GSAG LA RLSE K VL++EAG + PF LA +S +W
Sbjct: 1 MQADFVIIGSGSAGSALAYRLSEDGKNSVLVIEAGGSDFGPFIQMPAALAWPMSMKRYNW 60
Query: 174 NYMTMPEPHACKARPNGRCYWARGKVMGGSSTINYMIYARGNAEDYDEWEAMGNEGWGYD 233
Y++ PEP+ N R RGKV+GGSS+IN M+Y RG+AED++ WE +G GW Y
Sbjct: 61 GYLSEPEPNLN----NRRITAPRGKVIGGSSSINGMVYVRGHAEDFNRWEELGASGWAYA 116
Query: 234 EVLEYFKKSEDNEDKEIYHKNPEYHGKGGYQTVEWLPYADKNLPVLIKAWKEKGYPER-D 292
+VL YFK+ E + E + G G V+ + + I+A K+ G+ D
Sbjct: 117 DVLPYFKRMEHSHGGE-----EGWRGTDGPLHVQRGGFTNPLFRAFIEAGKQAGFETTDD 171
Query: 293 LNAENQIGVMHLQTTTRHGERLSTNGAFIRPIRKKRKNLTILTEAHVTRIICDKTPNKHK 352
N Q G ++ T G R S A+++P KRKN+ ++ +I D
Sbjct: 172 YNGSKQEGFGLMEQTIFSGRRWSAANAYLKPAL-KRKNVGMVYGLARKIVIEDGR----- 225
Query: 353 KLVAKSVEFFYKKKLRRARAKKEVISSAGAINSPKILMLSGIGPKDHLTSLNIKTLVDL- 411
A VE K+ +A +EVI SA + NSPK+LMLSGIGP HL + I D
Sbjct: 226 ---ATGVEIERGGKVEVVKATREVIVSASSFNSPKLLMLSGIGPGQHLNDMGIAVKADRP 282
Query: 412 KVGHNLQDHLTSDGIVIAFPKTATDRM--------YKKKVSDAFEYKESRCGPLASTGPL 463
VG NLQDH+ F + +T + + + V+ A ++ S+ G L ++
Sbjct: 283 GVGANLQDHME-----FYFQQVSTKPVSLYSWLPWFWQGVAGA-QWLLSKGG-LGASNQF 335
Query: 464 QCGVFAKTKLADSLDVPDIQFHHDPMSVRDWITNPVNASSTNMSPFAYYDGITVRPILLK 523
+ F ++ A L PDIQ+H P+++ S + A G V
Sbjct: 336 EACAFLRS--APGLKQPDIQYHFLPVAI-----------SYDGKAAAKSHGFQVHVGYNL 382
Query: 524 PKSRGYIQLNATDPLWGPPLIF 545
KSRG + L + DP P L F
Sbjct: 383 SKSRGSVTLRSPDPKAEPVLRF 404
>sp|Q6D6D9|BETA_ERWCT Choline dehydrogenase OS=Erwinia carotovora subsp. atroseptica
(strain SCRI 1043 / ATCC BAA-672) GN=betA PE=3 SV=1
Length = 559
Score = 191 bits (484), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 156/452 (34%), Positives = 222/452 (49%), Gaps = 50/452 (11%)
Query: 116 MTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIEE---PFFADVPG-LAPLISRSNI 171
M +D+IIIGAGSAG VLA RL+E VLLLEAG + F +P LA +
Sbjct: 1 MEYDYIIIGAGSAGNVLAARLTEESDVSVLLLEAGGPDYRLDFRTQMPAALAFPLQGKRY 60
Query: 172 DWNYMTMPEPHACKARPNGRCYWARGKVMGGSSTINYMIYARGNAEDYDEWEAM-GNEGW 230
+W Y T PEPH + R RGK +GGSS IN M Y RGNA D+D W M G E W
Sbjct: 61 NWAYETDPEPHM----NDRRMECGRGKGLGGSSLINGMCYIRGNAMDFDHWATMSGLEDW 116
Query: 231 GYDEVLEYFKKSEDNEDKEIYHKNPEYHGKGGYQTVEWLPYADKNL-PVLIKAWKEKGYP 289
Y + L YF+K+E + +YHG G +V + L +++A + GYP
Sbjct: 117 SYLDCLPYFRKAETRDVGA-----NDYHGASGPVSVTTPKMGNNELFHAMVEAGVQAGYP 171
Query: 290 ERD-LNAENQIGVMHL-QTTTRHGERLSTNGAFIRPIRKKRKNLTILTEAHVTRIICDKT 347
D LN Q G + +T T G R ST ++ K RKNLTI+T A RI+ D
Sbjct: 172 RTDDLNGYQQEGFGPMDRTVTPKGRRASTARGYLDQA-KSRKNLTIVTHALTDRILFDG- 229
Query: 348 PNKHKKLVAKSVEFFYKKKLRRARAKKEVISSAGAINSPKILMLSGIGPKDHLTSLNIKT 407
K+ V V +F + + A+A++EV+ AGAI SP+IL SG+GPKD L L+I
Sbjct: 230 ----KRAVG--VAYFKGESAQTAKARREVLLCAGAIASPQILQRSGVGPKDLLQRLDISV 283
Query: 408 LVDL-KVGHNLQDHL------TSDGIVIAFPKTATDRMYKKKVSDAFEYKESRCGPLAST 460
+ DL VG NLQDHL V +P A + K+ + + + G ++
Sbjct: 284 VHDLPGVGENLQDHLEMYLQYACKEPVSLYP--ALQWFNQPKIGAEWLFNGTGIG---AS 338
Query: 461 GPLQCGVFAKTKLADSLDVPDIQFHHDPMSVRDWITNPVNASSTNMSPFAYYDGITVRPI 520
+ G F +++ D P+IQ+H P+++ +N V G
Sbjct: 339 NQFEAGGFIRSR--DEFTWPNIQYHFLPVAINYNGSNAVKEH-----------GFQAHVG 385
Query: 521 LLKPKSRGYIQLNATDPLWGPPLIFPKFFTKK 552
++ SRG +Q+ + D P ++F T++
Sbjct: 386 SMRSLSRGRVQVRSKDAREHPSILFNYMSTEQ 417
>sp|Q1MJU4|BETA_RHIL3 Choline dehydrogenase OS=Rhizobium leguminosarum bv. viciae (strain
3841) GN=betA PE=3 SV=1
Length = 549
Score = 189 bits (481), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 149/455 (32%), Positives = 217/455 (47%), Gaps = 51/455 (11%)
Query: 116 MTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIEE--PFFADVPGLAPLISRSNIDW 173
M DF+IIG+GSAG LA RLSE K V+++EAG + PF LA +S +W
Sbjct: 1 MQADFVIIGSGSAGSALAYRLSEGGKNSVIVIEAGGSDFGPFIQMPAALAWPMSMKRYNW 60
Query: 174 NYMTMPEPHACKARPNGRCYWARGKVMGGSSTINYMIYARGNAEDYDEWEAMGNEGWGYD 233
Y++ PE + N R RGKV+GGSS+IN M+Y RG+AED++ WE +G GW Y
Sbjct: 61 GYLSEPEANLN----NRRITAPRGKVIGGSSSINGMVYVRGHAEDFNRWEELGASGWAYA 116
Query: 234 EVLEYFKKSEDNEDKEIYHKNPEYHGKGGYQTVEWLPYADKNLPVLIKAWKEKGY-PERD 292
+VL YFK+ E + E + G G V+ + + ++A K+ G+ D
Sbjct: 117 DVLPYFKRMEHSHGGE-----EGWRGTDGPLHVQRGGFTNPLFQAFVEAGKQAGFETTED 171
Query: 293 LNAENQIGVMHLQTTTRHGERLSTNGAFIRPIRKKRKNLTILTEAHVTRIICDKTPNKHK 352
N Q G ++ T G R S A+++P KR N+ I+ +I D
Sbjct: 172 YNGSKQEGFGLMEQTIFGGRRWSAANAYLKPAL-KRDNVKIVYGLAQRIVIEDGR----- 225
Query: 353 KLVAKSVEFFYKKKLRRARAKKEVISSAGAINSPKILMLSGIGPKDHLTSLNIKTLVDL- 411
A VE ++ +A +EVI SA + NSPK+LMLSGIGP HL + I D
Sbjct: 226 ---ATGVEIERNGRIEVVKANREVIVSASSFNSPKLLMLSGIGPGQHLQDMGIAVKADRP 282
Query: 412 KVGHNLQDHLTSDGIVIAFPKTATDRM--------YKKKVSDAFEYKESRCGPLASTGPL 463
VG NLQDH+ F + +T + + + V+ A ++ SR G L ++
Sbjct: 283 GVGANLQDHME-----FYFQQVSTKPVSLYSWLPWFWQGVAGA-QWLLSRGG-LGASNQF 335
Query: 464 QCGVFAKTKLADSLDVPDIQFHHDPMSVRDWITNPVNASSTNMSPFAYYDGITVRPILLK 523
+ F ++ A L PDIQ+H P+++ S + A G V
Sbjct: 336 EACAFLRS--APGLKQPDIQYHFLPVAI-----------SYDGKAAAKSHGFQVHVGYNL 382
Query: 524 PKSRGYIQLNATDPLWGPPLIFPKFFTKKPDLDVF 558
KSRG + L + DP P L F + + D + F
Sbjct: 383 SKSRGSVSLRSADPKADPVLRF-NYMSHAEDWEKF 416
>sp|Q2KB43|BETA_RHIEC Choline dehydrogenase OS=Rhizobium etli (strain CFN 42 / ATCC
51251) GN=betA PE=3 SV=1
Length = 549
Score = 189 bits (480), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 149/442 (33%), Positives = 214/442 (48%), Gaps = 50/442 (11%)
Query: 116 MTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIEE--PFFADVPGLAPLISRSNIDW 173
M DF+IIG+GSAG LA RLSE K VL++EAG + PF LA +S +W
Sbjct: 1 MQADFVIIGSGSAGSALAYRLSEDGKNSVLVIEAGGSDFGPFIQMPAALAWPMSMKRYNW 60
Query: 174 NYMTMPEPHACKARPNGRCYWARGKVMGGSSTINYMIYARGNAEDYDEWEAMGNEGWGYD 233
Y++ PEP+ N R RGKV+GGSS+IN M+Y RG+AED++ WE +G GW Y
Sbjct: 61 GYLSEPEPNLN----NRRITAPRGKVIGGSSSINGMVYVRGHAEDFNRWEELGASGWAYA 116
Query: 234 EVLEYFKKSEDNEDKEIYHKNPEYHGKGGYQTVEWLPYADKNLPVLIKAWKEKGY-PERD 292
+VL YFK+ E + E + G G V+ + + I+A K+ G+ D
Sbjct: 117 DVLPYFKRMEHSHGGE-----EGWRGTDGPLHVQRGGFTNPLFRAFIEAGKQAGFETTED 171
Query: 293 LNAENQIGVMHLQTTTRHGERLSTNGAFIRPIRKKRKNLTILTEAHVTRIICDKTPNKHK 352
N Q G ++ T G R S A+++P KR N+ I+ RI+ +
Sbjct: 172 YNGSKQEGFGLMEQTIFAGRRWSAANAYLKPAL-KRDNVGIVY-GLARRIVIENG----- 224
Query: 353 KLVAKSVEFFYKKKLRRARAKKEVISSAGAINSPKILMLSGIGPKDHLTSLNIKTLVDL- 411
A VE + +A +EVI SA + NSPK+LMLSGIGP HL + I+ D
Sbjct: 225 --RATGVEIERGGRTEVVKANREVIVSASSFNSPKLLMLSGIGPAKHLKEMGIEVKADRP 282
Query: 412 KVGHNLQDHLTSDGIVIAFPKTATDRM--------YKKKVSDAFEYKESRCGPLASTGPL 463
VG NLQDH+ F + +T + + + V+ A ++ S+ G L ++
Sbjct: 283 GVGANLQDHME-----FYFQQVSTKPVSLYSWLPWFWQGVAGA-QWLLSKGG-LGASNQF 335
Query: 464 QCGVFAKTKLADSLDVPDIQFHHDPMSVRDWITNPVNASSTNMSPFAYYDGITVRPILLK 523
+ F ++ A L PDIQ+H P+++ S + A G V
Sbjct: 336 EACAFLRS--APGLKQPDIQYHFLPVAI-----------SYDGKAAAKSHGFQVHVGYNL 382
Query: 524 PKSRGYIQLNATDPLWGPPLIF 545
KSRG + L + DP P L F
Sbjct: 383 SKSRGSVTLRSPDPKADPVLRF 404
>sp|A7N2P9|BETA_VIBHB Choline dehydrogenase OS=Vibrio harveyi (strain ATCC BAA-1116 /
BB120) GN=betA PE=3 SV=1
Length = 569
Score = 189 bits (479), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 158/456 (34%), Positives = 232/456 (50%), Gaps = 57/456 (12%)
Query: 118 FDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAG-IEEPFFADVP-GLAPLISRSNIDWNY 175
+D+II+GAGSAGCVLA+RLSE + +VLLLEAG ++ F +P L+ ++ W +
Sbjct: 5 YDYIIVGAGSAGCVLADRLSESGQHQVLLLEAGGSDKSIFIQMPTALSYPMNTEKYAWQF 64
Query: 176 MTMPEPHACKARPNGRCYWARGKVMGGSSTINYMIYARGNAEDYDEWEAMGNEGWGYDEV 235
T+ E + + + RGKV+GGSS+IN M+Y RG+A D+DEWEA G +GW Y
Sbjct: 65 ETVAE----EGLDGRQLHCPRGKVLGGSSSINGMVYVRGHACDFDEWEAEGAKGWNYQAC 120
Query: 236 LEYFKKSEDNEDKEIYHKNPEYHGKGGYQTVEWLPYADKNLPVL----IKAWKEKGYPE- 290
L YF+K+E EY +GG V D L L I+A K+ GYPE
Sbjct: 121 LPYFRKAETWTGGA-----DEY--RGGSGPVGTCNGNDMKLNPLYQAFIEAGKDAGYPET 173
Query: 291 RDLNAENQIGVMHLQTTTRHGERLSTNGAFIRPIRKKRKNLTILTEAHVTRIICDKTPNK 350
+D N Q G + T G R ST+ A++ KKR N T++ RI+ +
Sbjct: 174 QDYNGYQQEGFGPMHMTVDKGVRASTSNAYLSRA-KKRSNFTLMKGVTAHRILLEG---- 228
Query: 351 HKKLVAKSVEFFYKKKLRRARAKKEVISSAGAINSPKILMLSGIGPKDHLTSLNIKTLVD 410
KK V +EF ++++ A KEV+SSAG+I S ++L LSGIGPK L I+
Sbjct: 229 -KKAVG--IEFEQSGEIKQCFANKEVVSSAGSIGSVQLLQLSGIGPKTVLDKAGIEVKHT 285
Query: 411 LK-VGHNLQDHLTSDGIVIAF----PKTATDRM-YKKKVSDAFEYKESRCGPLASTGPLQ 464
L+ VG NLQDHL + + P T ++ K E+ +R G L +T +
Sbjct: 286 LEGVGKNLQDHLE---VYFQYHCKQPITLNSKLGLISKGLIGTEWILTRKG-LGATNHFE 341
Query: 465 CGVFAKTKLADSLDVPDIQFHHDPMSVRDWITNPVNASSTNMSPFAYYDG----ITVRPI 520
F +++ + L P+IQFH P ++R A +DG + V P
Sbjct: 342 SCAFIRSR--EGLKSPNIQFHFLPAAMR-------------YDGRAAFDGHGFQVHVGPN 386
Query: 521 LLKPKSRGYIQLNATDPLWGPPLIFPKFFTKKPDLD 556
KP+SRG +++ + +P P + F T++ D
Sbjct: 387 --KPESRGSVEVVSANPNDKPKIEFNYISTEQDKQD 420
>sp|Q8NE62|CHDH_HUMAN Choline dehydrogenase, mitochondrial OS=Homo sapiens GN=CHDH PE=2
SV=2
Length = 594
Score = 189 bits (479), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 151/461 (32%), Positives = 220/461 (47%), Gaps = 59/461 (12%)
Query: 118 FDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIEEPFFAD--------VPG-LAPLISR 168
+ ++++GAGSAGCVLA RL+E +VLLLEAG ++ +P L +
Sbjct: 41 YSYVVVGAGSAGCVLAGRLTEDPAERVLLLEAGPKDVLAGSKRLSWKIHMPAALVANLCD 100
Query: 169 SNIDWNYMTMPEPHACKARPNGRC-YWARGKVMGGSSTINYMIYARGNAEDYDEWEAMGN 227
+W Y T + +GR YW RG+V GGSS++N M+Y RG+AEDY+ W+ G
Sbjct: 101 DRYNWCYHT-----EVQRGLDGRVLYWPRGRVWGGSSSLNAMVYVRGHAEDYERWQRQGA 155
Query: 228 EGWGYDEVLEYFKKSEDNEDKEIYHKNPEYHGKGGYQTVEWLPYADKNLPV---LIKAWK 284
GW Y L YF+K++ +E Y G G V N P+ ++A +
Sbjct: 156 RGWDYAHCLPYFRKAQGHELGA-----SRYRGADGPLRVS---RGKTNHPLHCAFLEATQ 207
Query: 285 EKGYP-ERDLNAENQIGVMHLQTTTRHGERLSTNGAFIRPIRKKRKNLTILTEAHVTRII 343
+ GYP D+N Q G + T G+R S A++ P R NL E V+R++
Sbjct: 208 QAGYPLTEDMNGFQQEGFGWMDMTIHEGKRWSAACAYLHPA-LSRTNLKAEAETLVSRVL 266
Query: 344 CDKTPNKHKKLVAKSVEFFYKKKLRRARAKKEVISSAGAINSPKILMLSGIGPKDHLTSL 403
+ T A VE+ + RA A KEVI S GAINSP++LMLSGIG D L L
Sbjct: 267 FEGT-------RAVGVEYVKNGQSHRAYASKEVILSGGAINSPQLLMLSGIGNADDLKKL 319
Query: 404 NIKTLVDL-KVGHNLQDHLTSDGIVIAFPKTATDRMYK-----KKVSDAFEYKESRCGPL 457
I + L VG NLQDHL I I T ++ +KV E+ G
Sbjct: 320 GIPVVCHLPGVGQNLQDHLE---IYIQQACTRPITLHSAQKPLRKVCIGLEWLWKFTGE- 375
Query: 458 ASTGPLQCGVFAKTKLADSLDVPDIQFHHDPMSVRDWITNPVNASSTNMSPFAYYDGITV 517
+T L+ G F +++ + PDIQFH P V D P + + V
Sbjct: 376 GATAHLETGGFIRSQ--PGVPHPDIQFHFLPSQVIDHGRVPTQQEAYQ---------VHV 424
Query: 518 RPILLKPKSRGYIQLNATDPLWGPPLIFPKFFTKKPDLDVF 558
P ++ S G+++L + +P P+I P + + + D++ F
Sbjct: 425 GP--MRGTSVGWLKLRSANPQ-DHPVIQPNYLSTETDIEDF 462
>sp|Q8UH55|BETA_AGRT5 Choline dehydrogenase OS=Agrobacterium tumefaciens (strain C58 /
ATCC 33970) GN=betA PE=3 SV=2
Length = 549
Score = 188 bits (478), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 139/434 (32%), Positives = 215/434 (49%), Gaps = 50/434 (11%)
Query: 116 MTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIEE--PFFADVPGLAPLISRSNIDW 173
M D++I+G+GSAG +A RLSE ++ V+++EAG + PF LA +S +W
Sbjct: 1 MQADYVIVGSGSAGSAIAYRLSEDGRYSVIVIEAGGSDFGPFIQMPAALAWPMSMKRYNW 60
Query: 174 NYMTMPEPHACKARPNGRCYWARGKVMGGSSTINYMIYARGNAEDYDEWEAMGNEGWGYD 233
Y++ PEP+ N R RGKV+GGSS+IN ++Y RG+AED++ WE +G +GW Y
Sbjct: 61 GYLSEPEPNL----DNRRITAPRGKVIGGSSSINGLVYVRGHAEDFNRWEELGAQGWAYA 116
Query: 234 EVLEYFKKSEDNEDKEIYHKNPEYHGKGGYQTVEWLPYADKNLPVLIKAWKEKGYP-ERD 292
+VL YFK+ E + E + G G V+ P ++ I+A + G+ D
Sbjct: 117 DVLPYFKRMEHSHGGE-----EGWRGTDGPLHVQRGPVSNPLFHAFIQAGAQAGFELTDD 171
Query: 293 LNAENQIGVMHLQTTTRHGERLSTNGAFIRPIRKKRKNLTILTEAHVTRIICDKTPNKHK 352
N Q G ++ T +G R S A+++P KR N+T L ++I +
Sbjct: 172 YNGSKQEGFGLMEQTIHNGRRWSAANAYLKPA-LKRGNVT-LVNGFARKVIIENG----- 224
Query: 353 KLVAKSVEFFYKKKLRRARAKKEVISSAGAINSPKILMLSGIGPKDHLTSLNIKTLVDL- 411
A VE + ++ +A +EVI SA + NSPK+LMLSGIGP HL + I+ D
Sbjct: 225 --RAVGVEIERRGRVETVKANREVIVSASSFNSPKLLMLSGIGPAAHLKDMGIEVKADRP 282
Query: 412 KVGHNLQDHLTSDGIVIAFPKTATDRM--------YKKKVSDAFEYKESRCGPLASTGPL 463
VG NLQDH+ F + +T + + + V+ A ++ S+ G L ++
Sbjct: 283 GVGANLQDHME-----FYFQQVSTKPVSLYSWLPWFWQGVAGA-QWLLSKGG-LGASNQF 335
Query: 464 QCGVFAKTKLADSLDVPDIQFHHDPMSVRDWITNPVNASSTNMSPFAYYDGITVRPILLK 523
+ F ++ A L PDIQ+H P+++ S + A G
Sbjct: 336 EACAFLRS--APGLKQPDIQYHFLPVAI-----------SYDGKAAAKSHGFQAHVGYNL 382
Query: 524 PKSRGYIQLNATDP 537
KSRG + L + DP
Sbjct: 383 SKSRGNVTLRSADP 396
>sp|A4XPI5|BETA_PSEMY Choline dehydrogenase OS=Pseudomonas mendocina (strain ymp) GN=betA
PE=3 SV=1
Length = 565
Score = 187 bits (476), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 156/445 (35%), Positives = 215/445 (48%), Gaps = 52/445 (11%)
Query: 118 FDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIEE---PFFADVP-GLAPLISRSNIDW 173
FD+IIIGAGSAG VLA RL+E VLLLEAG + F +P LA + +W
Sbjct: 5 FDYIIIGAGSAGNVLATRLTEDADVSVLLLEAGGPDYRLDFRTQMPAALAFPLQGRRYNW 64
Query: 174 NYMTMPEPHACKARPNGRCYWARGKVMGGSSTINYMIYARGNAEDYDEW-EAMGNEGWGY 232
Y T PEPH N R RGK +GGSS IN M Y RGNA D+D W +A G E W Y
Sbjct: 65 AYETDPEPHMN----NRRMECGRGKGLGGSSLINGMCYIRGNALDFDNWAKAKGLEDWTY 120
Query: 233 DEVLEYFKKSEDNEDKEIYHKNPEYHGKGGYQTVEWLPYADKN--LPVLIKAWKEKGYPE 290
+ L YF+K+E + +YHG G +V P A N +++A + GYP
Sbjct: 121 HDCLPYFRKAESRDIGP-----NDYHGGDGPVSVT-TPKAGNNPLFHAMVEAGVQAGYPR 174
Query: 291 R-DLNAENQIGVMHL-QTTTRHGERLSTNGAFIRPIRKKRKNLTILTEAHVTRIICDKTP 348
DLN Q G + +T T G R ST ++ R +R NLTI+T A RI+ D
Sbjct: 175 TDDLNGYQQEGFGPMDRTVTPQGRRASTARGYLDQAR-ERPNLTIVTHATTDRILFDG-- 231
Query: 349 NKHKKLVAKSVEFFYKKKLRRARAKKEVISSAGAINSPKILMLSGIGPKDHLTSLNIKTL 408
K+ S ARA++EV+ AGAI SP+IL SG+GP L L+I +
Sbjct: 232 ---KRASGVSYLIGNANDATEARARREVLLCAGAIASPQILQRSGVGPAALLRELDIALV 288
Query: 409 VDL-KVGHNLQDHLTSDGIVIAFPKTATDRMY-------KKKVSDAFEYKESRCGPLAST 460
+L VG NLQDHL + + + T +Y + + + + + G ++
Sbjct: 289 HELPGVGQNLQDHLE---MYLQYACTQPVSLYPALKLLNQPGIGAQWLFTGNGIG---AS 342
Query: 461 GPLQCGVFAKTKLADSLDVPDIQFHHDPMSVRDWITNPVNASSTNMSPFAYYDGITVRPI 520
+ G F +T+ P+IQFH P+++ +N VN G
Sbjct: 343 NQFEAGGFIRTR--PEFAWPNIQFHFLPVAINYNGSNAVNEH-----------GFQAHVG 389
Query: 521 LLKPKSRGYIQLNATDPLWGPPLIF 545
++ SRG IQL + DP P ++F
Sbjct: 390 SMRSPSRGRIQLKSKDPRQHPSILF 414
>sp|C6DKY4|BETA_PECCP Choline dehydrogenase OS=Pectobacterium carotovorum subsp.
carotovorum (strain PC1) GN=betA PE=3 SV=1
Length = 559
Score = 187 bits (474), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 155/452 (34%), Positives = 222/452 (49%), Gaps = 50/452 (11%)
Query: 116 MTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIEE---PFFADVPG-LAPLISRSNI 171
M +D+IIIGAGSAG VLA RL+E VLLLEAG + F +P LA +
Sbjct: 1 MEYDYIIIGAGSAGNVLATRLTEESDVSVLLLEAGGPDYRLDFRTQMPAALAFPLQGKRY 60
Query: 172 DWNYMTMPEPHACKARPNGRCYWARGKVMGGSSTINYMIYARGNAEDYDEWEAM-GNEGW 230
+W Y T PEPH N R RGK +GGSS IN M Y RGNA D+D W M G E W
Sbjct: 61 NWAYETDPEPHMN----NRRMECGRGKGLGGSSLINGMCYIRGNAMDFDNWATMPGLEDW 116
Query: 231 GYDEVLEYFKKSEDNEDKEIYHKNPEYHGKGGYQTVEWLPYADKNL-PVLIKAWKEKGYP 289
Y + L YF+K+E + + +YHG G +V + L +++A + GYP
Sbjct: 117 SYLDCLPYFRKAETRD-----VGSNDYHGATGPVSVATPKMGNNELFHAMVEAGVQAGYP 171
Query: 290 ERD-LNAENQIGVMHL-QTTTRHGERLSTNGAFIRPIRKKRKNLTILTEAHVTRIICDKT 347
D LN Q G + +T T G R ST ++ K RKNLTI+T A + DK
Sbjct: 172 RTDDLNGYQQEGFGPMDRTVTPKGRRASTARGYLDQA-KGRKNLTIVTHA-----LTDKI 225
Query: 348 PNKHKKLVAKSVEFFYKKKLRRARAKKEVISSAGAINSPKILMLSGIGPKDHLTSLNIKT 407
+ K+ V V +F + + +A++EV+ AGAI SP+IL SG+GPKD L L+I
Sbjct: 226 LFEGKRAVG--VAYFKGESPQTVQARREVLLCAGAIASPQILQRSGVGPKDLLQGLDIPV 283
Query: 408 LVDL-KVGHNLQDHL------TSDGIVIAFPKTATDRMYKKKVSDAFEYKESRCGPLAST 460
+ DL VG NLQDHL V +P A + K+ + + + G ++
Sbjct: 284 VHDLPGVGENLQDHLEMYLQYACKEPVSLYP--ALQWFNQPKIGAEWLFSGTGIG---AS 338
Query: 461 GPLQCGVFAKTKLADSLDVPDIQFHHDPMSVRDWITNPVNASSTNMSPFAYYDGITVRPI 520
+ G F +++ D P+IQ+H P+++ +N V G
Sbjct: 339 NQFEAGGFIRSR--DEFAWPNIQYHFLPVAINYNGSNAVKEH-----------GFQAHVG 385
Query: 521 LLKPKSRGYIQLNATDPLWGPPLIFPKFFTKK 552
++ SRG +Q+ + D P ++F T++
Sbjct: 386 SMRSLSRGRVQVRSKDAREHPSILFNYMSTEQ 417
>sp|P54223|BETA_RHIME Choline dehydrogenase OS=Rhizobium meliloti (strain 1021) GN=betA
PE=3 SV=2
Length = 549
Score = 187 bits (474), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 146/442 (33%), Positives = 214/442 (48%), Gaps = 50/442 (11%)
Query: 116 MTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIEE--PFFADVPGLAPLISRSNIDW 173
M DF+IIG+GSAG LA RLSE + V++LE G + PF LA +S + +W
Sbjct: 1 MQADFVIIGSGSAGSALAYRLSEDGRNSVIVLEFGGSDVGPFIQMPAALAWPMSMNRYNW 60
Query: 174 NYMTMPEPHACKARPNGRCYWARGKVMGGSSTINYMIYARGNAEDYDEWEAMGNEGWGYD 233
Y++ PEP+ N R RGKV+GGSS+IN M+Y RG++ED++ WE +G +GW Y
Sbjct: 61 GYLSEPEPNLN----NRRITAPRGKVIGGSSSINGMVYVRGHSEDFNRWEELGAQGWAYA 116
Query: 234 EVLEYFKKSEDNEDKEIYHKNPEYHGKGGYQTVEWLPYADKNLPVLIKAWKEKGYP-ERD 292
+VL Y+K+ E + E + G G V+ P + I+A KE G+ D
Sbjct: 117 DVLPYYKRMEHSHGGE-----EGWRGTDGPLHVQRGPVKNPLFHAFIEAGKEAGFEVTED 171
Query: 293 LNAENQIGVMHLQTTTRHGERLSTNGAFIRPIRKKRKNLTILTEAHVTRIICDKTPNKHK 352
N Q G ++ TT G R S A++RP KR N+ ++ R K ++
Sbjct: 172 YNGSKQEGFGLMEQTTWRGRRWSAASAYLRPA-LKRPNVELI------RCFARKIVIENG 224
Query: 353 KLVAKSVEFFYKKKLRRARAKKEVISSAGAINSPKILMLSGIGPKDHLTSLNIKTLVDL- 411
+ A VE ++ +A +EVI SA + NSPK+LMLSGIGP HL + I VD
Sbjct: 225 R--ATGVEIERGGRIEVVKANREVIVSASSFNSPKLLMLSGIGPAAHLKEMGIDVKVDRP 282
Query: 412 KVGHNLQDHLTSDGIVIAFPKTATDRM--------YKKKVSDAFEYKESRCGPLASTGPL 463
VG NLQDH+ F + +T + + + V+ A R L +
Sbjct: 283 GVGQNLQDHME-----FYFQQVSTKPVSLYSWLPWFWQGVAGAQWLFFKRG--LGISNQF 335
Query: 464 QCGVFAKTKLADSLDVPDIQFHHDPMSVRDWITNPVNASSTNMSPFAYYDGITVRPILLK 523
+ F ++ A + PDIQ+H P+++ S + A G V
Sbjct: 336 ESCAFLRS--APGVKQPDIQYHFLPVAI-----------SYDGKAAAKSHGFQVHVGYNL 382
Query: 524 PKSRGYIQLNATDPLWGPPLIF 545
KSRG + L ++DP P + F
Sbjct: 383 SKSRGNVSLRSSDPKADPVIRF 404
>sp|Q6FDF9|BETA_ACIAD Choline dehydrogenase OS=Acinetobacter sp. (strain ADP1) GN=betA
PE=3 SV=1
Length = 553
Score = 185 bits (470), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 153/463 (33%), Positives = 230/463 (49%), Gaps = 56/463 (12%)
Query: 117 TFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIEE---PFFADVP-GLAPLISRSNID 172
TFD+IIIGAGSAG VLA RL+E VLLLEAG + F +P LA + +
Sbjct: 5 TFDYIIIGAGSAGNVLAARLTEDADVSVLLLEAGGPDYRLDFRTQMPAALAYPLQGRRYN 64
Query: 173 WNYMTMPEPHACKARPNGRCYWARGKVMGGSSTINYMIYARGNAEDYDEWEAM-GNEGWG 231
W Y+T PEPH N R RGK +GGSS IN M Y RGNA D + W + G E W
Sbjct: 65 WAYLTEPEPHMN----NRRMECGRGKGLGGSSLINGMCYIRGNAMDLEGWSKLKGLENWT 120
Query: 232 YDEVLEYFKKSEDNEDKEIYHKNPEYHGKGGYQTVEWLPYADKNL--PVLIKAWKEKGYP 289
Y + L Y+KK+E + +YHG G +V P + N+ +++A + GYP
Sbjct: 121 YADCLPYYKKAETRDI-----GGNDYHGDHGPVSVA-TPKDNNNVLFHAMVEAGVQAGYP 174
Query: 290 ER-DLNAENQIGVMHL-QTTTRHGERLSTNGAFIRPIRKKRKNLTILTEAHVTRIICDKT 347
DLN Q G + +T T++G R ST ++ + K+R NLTI+T A +I+
Sbjct: 175 RTDDLNGYQQEGFGPMDRTVTKNGRRSSTARGYLD-MAKERPNLTIITHAMTNKILF--- 230
Query: 348 PNKHKKLVAKSVEFFYKKKLRRARAKKEVISSAGAINSPKILMLSGIGPKDHLTSLNIKT 407
N + + + ++ K+ L++ A KEV+ AGAI SP+IL SG+G L S++I
Sbjct: 231 -NGKQAIGVEYIQGADKRDLKKVMANKEVLLCAGAIASPQILQRSGVGESTFLKSMDIDV 289
Query: 408 LVDL-KVGHNLQDHLTSDGIVIAFPKTATDRMYKKKVSDAFE-YKESRCGP--------L 457
+ DL VG NLQDHL + + + +Y A + Y + G +
Sbjct: 290 VHDLPGVGENLQDHLE---MYLQYKCKQPVSLYP-----ALKWYNQPAIGAEWLFLGKGI 341
Query: 458 ASTGPLQCGVFAKTKLADSLDVPDIQFHHDPMSVRDWITNPVNASSTNMSPFAYYDGITV 517
++ + G F ++ +D + P+IQ+H P+++ +N V G
Sbjct: 342 GASNQFEAGGFIRS--SDEFEWPNIQYHFLPVAINYNGSNAVKEH-----------GFQA 388
Query: 518 RPILLKPKSRGYIQLNATDPLWGPPLIFPKFFTKKPDLDVFVA 560
++ SRG+I+L + DP P ++F + + + D F A
Sbjct: 389 HVGSMRSPSRGHIKLKSKDPFEHPSILF-NYMSTEQDWQEFRA 430
>sp|Q4K4K7|BETA_PSEF5 Choline dehydrogenase OS=Pseudomonas fluorescens (strain Pf-5 /
ATCC BAA-477) GN=betA PE=3 SV=1
Length = 567
Score = 185 bits (469), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 159/452 (35%), Positives = 227/452 (50%), Gaps = 52/452 (11%)
Query: 118 FDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIEE---PFFADVPG-LAPLISRSNIDW 173
+D+II+GAGSAG LA RL+E + VLLLEAG + F +P LA + +W
Sbjct: 5 YDYIIVGAGSAGNTLATRLTEDEGVTVLLLEAGGPDYRFDFRTQMPAALAFPLQGRRYNW 64
Query: 174 NYMTMPEPHACKARPNGR-CYWARGKVMGGSSTINYMIYARGNAEDYDEWEAM-GNEGWG 231
Y T PEPH NGR RGK +GGSS IN M Y RGNA DYD W + G E W
Sbjct: 65 AYETDPEPHM-----NGRRMECGRGKGLGGSSLINGMCYIRGNAMDYDGWAKLPGLEDWT 119
Query: 232 YDEVLEYFKKSEDNEDKEIYHKNP-EYHGKGGYQTVEWLPYADKN--LPVLIKAWKEKGY 288
Y + L YF+K+E + P +YHG G +V P A N +++A + GY
Sbjct: 120 YLDCLPYFRKAETRD------IGPNDYHGGEGPVSVT-TPKAGNNPLFHAMVEAGVQAGY 172
Query: 289 PE-RDLNAENQIGVMHL-QTTTRHGERLSTNGAFIRPIRKKRKNLTILTEAHVTRIICDK 346
P DLN Q G + +T T G R ST ++ KKR LTI+T A + DK
Sbjct: 173 PRTEDLNGYQQEGFGPMDRTVTPKGRRASTARGYLD-TAKKRSTLTIVTHA-----LTDK 226
Query: 347 TPNKHKKLVAKSVEFFYKKKLRRARAKKEVISSAGAINSPKILMLSGIGPKDHLTSLNIK 406
+ K+ V S ++ ARA+KEVI S+GAI SP++L SG+GP+ L SL+I
Sbjct: 227 ILFEGKRAVGVSYLQGSTEERVEARARKEVIVSSGAIASPQLLQRSGVGPRALLESLDIP 286
Query: 407 TLVDLK-VGHNLQDHLTSDGIVIAFPKTATDRMYKKKV-----SDAFEYKESRCGPLAST 460
+ DL VG NLQDHL + + + T +Y + + E+ + G + ++
Sbjct: 287 VVHDLPGVGENLQDHLE---LYLQYACTQPVSLYPSLLWWNQPAIGAEWLFNGTG-IGAS 342
Query: 461 GPLQCGVFAKTKLADSLDVPDIQFHHDPMSVRDWITNPVNASSTNMSPFAYYDGITVRPI 520
+ G F +T+ + + P+IQ+H P+++ +N V F + G P
Sbjct: 343 NQFEAGGFIRTR--EEFEWPNIQYHFLPVAINYNGSNGVKEHG-----FQAHMGSMRSP- 394
Query: 521 LLKPKSRGYIQLNATDPLWGPPLIFPKFFTKK 552
SRG +QL + DP P ++F T++
Sbjct: 395 -----SRGRVQLKSKDPRQHPSILFNYMATEQ 421
>sp|A6X2G7|BETA_OCHA4 Choline dehydrogenase OS=Ochrobactrum anthropi (strain ATCC 49188 /
DSM 6882 / NCTC 12168) GN=betA PE=3 SV=1
Length = 549
Score = 184 bits (468), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 140/440 (31%), Positives = 211/440 (47%), Gaps = 46/440 (10%)
Query: 116 MTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIEE--PFFADVPGLAPLISRSNIDW 173
M DF+IIG+GSAG +A RLSE ++ V+++E G+ + P L+ ++ DW
Sbjct: 1 MEADFVIIGSGSAGSAMAYRLSEDGRYSVIVIEYGVPDVGPLIQMPAALSFPMNMETYDW 60
Query: 174 NYMTMPEPHACKARPNGRCYWA-RGKVMGGSSTINYMIYARGNAEDYDEWEAMGNEGWGY 232
+ T PEPH GR RGKV+GGSS+IN M+Y RG+A DYD W G GW Y
Sbjct: 61 GFSTEPEPHI-----GGRSLVTPRGKVLGGSSSINGMVYVRGHARDYDHWSESGARGWAY 115
Query: 233 DEVLEYFKKSEDNEDKEIYHKNPEYHGKGGYQTVEWLPYADKNLPVLIKAWKEKGYP-ER 291
+VL YFK+ E++ + + G G ++ + ++A E G+
Sbjct: 116 ADVLPYFKRMENSSGGQ-----EGWRGTNGPLYIQRGKRDNPLFHAFVEAGHEAGFEVTE 170
Query: 292 DLNAENQIGVMHLQTTTRHGERLSTNGAFIRPIRKKRKNLTILTEAHVTRIICDKTPNKH 351
D N E Q G ++ T +G R S A+++P KR N+ L + +I+ +
Sbjct: 171 DYNGEKQEGFGPMEQTIHNGRRWSAANAYLKPA-LKRPNVK-LVKGLARKIVLEG----- 223
Query: 352 KKLVAKSVEFFYKKKLRRARAKKEVISSAGAINSPKILMLSGIGPKDHLTSLNIKTLVDL 411
K+ V VE + RA++EVI +A +INSPK+LMLSGIGP L I+ + D
Sbjct: 224 KRAVG--VEIEAGRSFSTIRARREVIIAASSINSPKLLMLSGIGPAAQLKEHGIEVVADR 281
Query: 412 -KVGHNLQDHLTSDGIVIAFPKTATDRMYKK-----KVSDAFEYKESRCGPLASTGPLQC 465
VG NLQDHL + I T +Y K K E+ + G +T +
Sbjct: 282 PGVGQNLQDHLE---VYIQQECTQPITLYSKLNLFSKAKIGAEWLFFKTGD-GATNHFES 337
Query: 466 GVFAKTKLADSLDVPDIQFHHDPMSVRDWITNPVNASSTNMSPFAYYDGITVRPILLKPK 525
F ++K ++ PDIQ+H P+++R + A G ++ K
Sbjct: 338 AAFLRSKAG--VEYPDIQYHFLPVAIR-----------YDGKAAAQSHGFQAHVGPMRSK 384
Query: 526 SRGYIQLNATDPLWGPPLIF 545
SRG + L + +P P + F
Sbjct: 385 SRGSVTLRSANPREKPVIKF 404
>sp|Q5HL11|BETA_STAEQ Choline dehydrogenase OS=Staphylococcus epidermidis (strain ATCC
35984 / RP62A) GN=betA PE=3 SV=1
Length = 572
Score = 184 bits (467), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 152/464 (32%), Positives = 218/464 (46%), Gaps = 45/464 (9%)
Query: 117 TFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIEEPF---FADVPGLAPLISRSNI-D 172
++D++IIG GSAG VL RLSE K VL+LEAG + F F +P S + D
Sbjct: 7 SYDYVIIGGGSAGSVLGARLSEDKDKNVLVLEAGRSDYFWDLFIQMPAALMFPSGNRFYD 66
Query: 173 WNYMTMPEPHACKARPNGRCYWARGKVMGGSSTINYMIYARGNAEDYDEW-EAMGNEGWG 231
W Y T EPH + R ARGKV+GGSS+IN MIY RGN DY+ W E G + W
Sbjct: 67 WEYQTDEEPHMGR-----RVDHARGKVLGGSSSINGMIYQRGNPMDYEGWAEPEGMDTWD 121
Query: 232 YDEVLEYFKKSEDNEDKEIYHKNPEYHGKGGYQTVEWLPYADKNLPVLIKAWKEKGYPER 291
+ L YFKK E Y K G G ++ P + A E GY +
Sbjct: 122 FAHCLPYFKKLETTYGAAPYDK---VRGHDGPIKLKRGPATNPLFKSFFNAGVEAGYHKT 178
Query: 292 -DLNAENQIGVMHLQTTTRHGERLSTNGAFIRPIRKKRKNLTILTEAHVTRIICDKTPNK 350
D+N Q G + HG R+S + A++RP +R+NL + T A VT++I D+ N
Sbjct: 179 ADVNGYRQEGFGPFDSQVHHGRRMSASRAYLRPAL-RRRNLDVETRAFVTKLIFDE--NN 235
Query: 351 HKKLVAKSVEFFYKKKLRRARAKKEVISSAGAINSPKILMLSGIGPKDHLTSLNIKTLVD 410
KK+ + F K EVI S GA N+P++L LSGIG + L S I+ +
Sbjct: 236 SKKVTGVT---FKKNGKEHTVHANEVILSGGAFNTPQLLQLSGIGDSEFLKSKGIEPRMH 292
Query: 411 LK-VGHNLQDHL------TSDGIVIAFPKTATDRMYKKKVSDAFEYKESRCGPLASTGPL 463
L VG N +DHL V P RM + F K + A++
Sbjct: 293 LPGVGENFEDHLEVYIQHKCKQPVSLQPSLDVKRMPFIGLQWIFARKGA-----AASNHF 347
Query: 464 QCGVFAKTKLADSLDVPDIQFHHDPMSVRDWITNPVNASSTNMSPFAYYDGITVRPILLK 523
+ G F ++ D +D P++ FH P++VR +P A+ + V P+
Sbjct: 348 EGGGFVRSN--DDVDYPNLMFHFLPIAVR---------YDGQKAPVAHGYQVHVGPMY-- 394
Query: 524 PKSRGYIQLNATDPLWGPPLIFPKFFTKKPDLDVFVAGEFATDV 567
SRG +++ + DP P ++F TK+ + + A A ++
Sbjct: 395 SNSRGSLKIKSKDPFEKPSIVFNYLSTKEDEREWIEAIRVARNI 438
>sp|Q8CMY2|BETA_STAES Choline dehydrogenase OS=Staphylococcus epidermidis (strain ATCC
12228) GN=betA PE=3 SV=1
Length = 572
Score = 184 bits (467), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 150/449 (33%), Positives = 212/449 (47%), Gaps = 45/449 (10%)
Query: 117 TFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIEEPF---FADVPGLAPLISRSNI-D 172
++D++IIG GSAG VL RLSE K VL+LEAG + F F +P S + D
Sbjct: 7 SYDYVIIGGGSAGSVLGARLSEDKDKNVLVLEAGRSDYFWDLFIQMPAALMFPSGNRFYD 66
Query: 173 WNYMTMPEPHACKARPNGRCYWARGKVMGGSSTINYMIYARGNAEDYDEW-EAMGNEGWG 231
W Y T EPH + R ARGKV+GGSS+IN MIY RGN DY+ W E G + W
Sbjct: 67 WEYQTDEEPHMGR-----RVDHARGKVLGGSSSINGMIYQRGNPMDYEGWAEPEGMDTWD 121
Query: 232 YDEVLEYFKKSEDNEDKEIYHKNPEYHGKGGYQTVEWLPYADKNLPVLIKAWKEKGYPER 291
+ L YFKK E Y K G G ++ P + A E GY +
Sbjct: 122 FAHCLPYFKKLETTYGAAPYDK---VRGHDGPIKLKRGPATNPLFKSFFNAGVEAGYHKT 178
Query: 292 -DLNAENQIGVMHLQTTTRHGERLSTNGAFIRPIRKKRKNLTILTEAHVTRIICDKTPNK 350
D+N Q G + HG R+S + A++RP +R+NL + T A VT++I D+ N
Sbjct: 179 ADVNGYRQEGFGPFDSQVHHGRRMSASRAYLRPAL-RRRNLDVETRAFVTKLIFDE--NN 235
Query: 351 HKKLVAKSVEFFYKKKLRRARAKKEVISSAGAINSPKILMLSGIGPKDHLTSLNIKTLVD 410
KK+ + F K EVI S GA N+P++L LSGIG + L S I+ +
Sbjct: 236 SKKVTGVT---FKKNGKEHTVHANEVILSGGAFNTPQLLQLSGIGDSEFLKSKGIEPRMH 292
Query: 411 LK-VGHNLQDHL------TSDGIVIAFPKTATDRMYKKKVSDAFEYKESRCGPLASTGPL 463
L VG N +DHL V P RM + F K + A++
Sbjct: 293 LPGVGENFEDHLEVYIQHKCKQPVSLQPSLDVKRMPFIGLQWIFARKGA-----AASNHF 347
Query: 464 QCGVFAKTKLADSLDVPDIQFHHDPMSVRDWITNPVNASSTNMSPFAYYDGITVRPILLK 523
+ G F ++ D +D P++ FH P++VR +P A+ + V P+
Sbjct: 348 EGGGFVRSN--DDVDYPNLMFHFLPIAVR---------YDGQKAPVAHGYQVHVGPMY-- 394
Query: 524 PKSRGYIQLNATDPLWGPPLIFPKFFTKK 552
SRG +++ + DP P ++F TK+
Sbjct: 395 SNSRGSLKIKSKDPFEKPSIVFNYLSTKE 423
>sp|A6U6Y8|BETA_SINMW Choline dehydrogenase OS=Sinorhizobium medicae (strain WSM419)
GN=betA PE=3 SV=1
Length = 549
Score = 184 bits (466), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 146/442 (33%), Positives = 209/442 (47%), Gaps = 50/442 (11%)
Query: 116 MTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIEE--PFFADVPGLAPLISRSNIDW 173
M DF+IIG+GSAG LA RLSE V++LE G + PF LA +S + +W
Sbjct: 1 MQADFVIIGSGSAGSALAYRLSEDGANSVVVLEFGGSDVGPFIQMPAALAWPMSMNRYNW 60
Query: 174 NYMTMPEPHACKARPNGRCYWARGKVMGGSSTINYMIYARGNAEDYDEWEAMGNEGWGYD 233
Y++ PEP+ N R RGKV+GGSS+IN M+Y RG++ED+D WE +G +GW Y
Sbjct: 61 GYLSEPEPNLN----NRRITAPRGKVIGGSSSINGMVYVRGHSEDFDRWEELGAKGWAYA 116
Query: 234 EVLEYFKKSEDNEDKEIYHKNPEYHGKGGYQTVEWLPYADKNLPVLIKAWKEKGYP-ERD 292
+VL Y+K+ E + E + G G V+ P + I+A K+ G+ D
Sbjct: 117 DVLPYYKRMEHSHGGE-----EGWRGTDGPLHVQRGPVKNPLFHAFIEAGKQAGFEVTED 171
Query: 293 LNAENQIGVMHLQTTTRHGERLSTNGAFIRPIRKKRKNLTILTEAHVTRIICDKTPNKHK 352
N Q G ++ TT G R S A++RP KR N+ L +I+ +
Sbjct: 172 YNGSKQEGFGLMEQTTWRGRRWSAASAYLRPA-LKRPNVE-LVRCFARKIVIENG----- 224
Query: 353 KLVAKSVEFFYKKKLRRARAKKEVISSAGAINSPKILMLSGIGPKDHLTSLNIKTLVDL- 411
A VE + RA +EVI SA + NSPK+LMLSGIGP HL + I D
Sbjct: 225 --RATGVEIERGGRTEVVRANREVIVSASSFNSPKLLMLSGIGPAAHLQEMGIDVKADRP 282
Query: 412 KVGHNLQDHLTSDGIVIAFPKTATDRM--------YKKKVSDAFEYKESRCGPLASTGPL 463
VG NLQDH+ F + +T + + + V+ A R L +
Sbjct: 283 GVGQNLQDHME-----FYFQQVSTKPVSLYSWLPWFWQGVAGAQWLFFKRG--LGISNQF 335
Query: 464 QCGVFAKTKLADSLDVPDIQFHHDPMSVRDWITNPVNASSTNMSPFAYYDGITVRPILLK 523
+ F ++ A + PDIQ+H P+++ S + A G V
Sbjct: 336 ESCAFLRS--APGVKQPDIQYHFLPVAI-----------SYDGKAAAKSHGFQVHVGYNL 382
Query: 524 PKSRGYIQLNATDPLWGPPLIF 545
KSRG + L ++DP P + F
Sbjct: 383 SKSRGDVTLRSSDPKADPVIRF 404
>sp|B0CKN4|BETA_BRUSI Choline dehydrogenase OS=Brucella suis (strain ATCC 23445 / NCTC
10510) GN=betA PE=3 SV=1
Length = 549
Score = 183 bits (465), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 139/440 (31%), Positives = 212/440 (48%), Gaps = 46/440 (10%)
Query: 116 MTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIEE--PFFADVPGLAPLISRSNIDW 173
M DF+IIG+GSAG +A RLSE ++ V+++E G+ + P L+ ++ DW
Sbjct: 1 MEADFVIIGSGSAGSAMAYRLSEDGRYSVIVIEYGVPDVGPLIQMPAALSFPMNMETYDW 60
Query: 174 NYMTMPEPHACKARPNGRCYWA-RGKVMGGSSTINYMIYARGNAEDYDEWEAMGNEGWGY 232
+ + PEPH GR RGKV+GGSS+IN M+Y RG+A D+D W G GW Y
Sbjct: 61 GFSSEPEPHI-----GGRSLVTPRGKVLGGSSSINGMVYVRGHACDFDHWSQSGARGWAY 115
Query: 233 DEVLEYFKKSEDNEDKEIYHKNPEYHGKGGYQTVEWLPYADKNLPVLIKAWKEKGYP-ER 291
+VL YFK+ E+++ + + G G V+ + ++A + G+
Sbjct: 116 ADVLPYFKRMENSQGGQ-----EGWRGTNGPLYVQRGKRDNPLFHAFVEAGHQAGFEVTD 170
Query: 292 DLNAENQIGVMHLQTTTRHGERLSTNGAFIRPIRKKRKNLTILTEAHVTRIICDKTPNKH 351
D N E Q G ++ T +G R S A+++P KR N+ L + +I+ +
Sbjct: 171 DYNGEKQEGFGPMEQTIHNGRRWSAANAYLKPA-LKRPNVK-LVKGFARKIVLEG----- 223
Query: 352 KKLVAKSVEFFYKKKLRRARAKKEVISSAGAINSPKILMLSGIGPKDHLTSLNIKTLVDL 411
K+ V VE + RA++EVI +A +INSPK+LMLSGIGP HL I + D
Sbjct: 224 KRAVG--VEIEAGRTFSTIRARREVIIAASSINSPKLLMLSGIGPAAHLKEHGIDLVADR 281
Query: 412 -KVGHNLQDHLTSDGIVIAFPKTATDRMYKK-----KVSDAFEYKESRCGPLASTGPLQC 465
VG NLQDHL + I T +Y K K E+ + G +T +
Sbjct: 282 PGVGQNLQDHLE---VYIQQECTQPITLYSKLNLFSKARIGVEWLLFKTGD-GATNHFES 337
Query: 466 GVFAKTKLADSLDVPDIQFHHDPMSVRDWITNPVNASSTNMSPFAYYDGITVRPILLKPK 525
F ++K ++ PDIQ+H P+++R + A G ++ K
Sbjct: 338 AAFVRSKAG--VEYPDIQYHFLPVAIR-----------YDGKAAAQSHGFQAHVGPMRSK 384
Query: 526 SRGYIQLNATDPLWGPPLIF 545
SRG + L + +P P + F
Sbjct: 385 SRGSVTLRSANPREKPVIKF 404
>sp|A5VPA6|BETA_BRUO2 Choline dehydrogenase OS=Brucella ovis (strain ATCC 25840 / 63/290
/ NCTC 10512) GN=betA PE=3 SV=1
Length = 549
Score = 183 bits (465), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 139/440 (31%), Positives = 212/440 (48%), Gaps = 46/440 (10%)
Query: 116 MTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIEE--PFFADVPGLAPLISRSNIDW 173
M DF+IIG+GSAG +A RLSE ++ V+++E G+ + P L+ ++ DW
Sbjct: 1 MEADFVIIGSGSAGSAMAYRLSEDGRYSVIVIEYGVPDVGPLIQMPAALSFPMNMETYDW 60
Query: 174 NYMTMPEPHACKARPNGRCYWA-RGKVMGGSSTINYMIYARGNAEDYDEWEAMGNEGWGY 232
+ + PEPH GR RGKV+GGSS+IN M+Y RG+A D+D W G GW Y
Sbjct: 61 GFSSEPEPHI-----GGRSLVTPRGKVLGGSSSINGMVYVRGHACDFDHWSQSGARGWAY 115
Query: 233 DEVLEYFKKSEDNEDKEIYHKNPEYHGKGGYQTVEWLPYADKNLPVLIKAWKEKGYP-ER 291
+VL YFK+ E+++ + + G G V+ + ++A + G+
Sbjct: 116 ADVLPYFKRMENSQGGQ-----EGWRGTNGPLYVQRGKRDNPLFHAFVEAGHQAGFEVTD 170
Query: 292 DLNAENQIGVMHLQTTTRHGERLSTNGAFIRPIRKKRKNLTILTEAHVTRIICDKTPNKH 351
D N E Q G ++ T +G R S A+++P KR N+ L + +I+ +
Sbjct: 171 DYNGEKQEGFGPMEQTIHNGRRWSAANAYLKPA-LKRPNVK-LVKGFARKIVLEG----- 223
Query: 352 KKLVAKSVEFFYKKKLRRARAKKEVISSAGAINSPKILMLSGIGPKDHLTSLNIKTLVDL 411
K+ V VE + RA++EVI +A +INSPK+LMLSGIGP HL I + D
Sbjct: 224 KRAVG--VEIEAGRTFSTIRARREVIIAASSINSPKLLMLSGIGPAAHLKEHGIDLVADR 281
Query: 412 -KVGHNLQDHLTSDGIVIAFPKTATDRMYKK-----KVSDAFEYKESRCGPLASTGPLQC 465
VG NLQDHL + I T +Y K K E+ + G +T +
Sbjct: 282 PGVGQNLQDHLE---VYIQQECTQPITLYSKLNLFSKARIGVEWLLFKTGD-GATNHFES 337
Query: 466 GVFAKTKLADSLDVPDIQFHHDPMSVRDWITNPVNASSTNMSPFAYYDGITVRPILLKPK 525
F ++K ++ PDIQ+H P+++R + A G ++ K
Sbjct: 338 AAFVRSKAG--VEYPDIQYHFLPVAIR-----------YDGKAAAQSHGFQAHVGPMRSK 384
Query: 526 SRGYIQLNATDPLWGPPLIF 545
SRG + L + +P P + F
Sbjct: 385 SRGSVTLRSANPREKPVIKF 404
>sp|B4SHV9|BETA_STRM5 Choline dehydrogenase OS=Stenotrophomonas maltophilia (strain
R551-3) GN=betA PE=3 SV=1
Length = 560
Score = 183 bits (465), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 159/454 (35%), Positives = 219/454 (48%), Gaps = 72/454 (15%)
Query: 118 FDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIEE---PFFADVPG-LAPLISRSNIDW 173
+D+IIIGAGSAG VLA RL+E VLLLEAG + F +P LA + +W
Sbjct: 7 YDYIIIGAGSAGNVLATRLTEDADVSVLLLEAGGPDYRLDFRTQMPAALAFPLQGKRYNW 66
Query: 174 NYMTMPEPHACKARPNGRCYWARGKVMGGSSTINYMIYARGNAEDYDEWEAM-GNEGWGY 232
Y T PEP N R RGK +GGSS IN M Y RGNA DYD W +M G E W Y
Sbjct: 67 AYKTDPEPFMN----NRRMDCGRGKGLGGSSLINGMCYIRGNAMDYDNWASMPGLEDWTY 122
Query: 233 DEVLEYFKKSEDNEDKEIYHKNPEYHGKGGYQTVEWLPYADKN--LPVLIKAWKEKGYPE 290
+ L YF+K+E + +YHG G V P A N +++A + GYP
Sbjct: 123 LDCLPYFRKAETRDIGP-----NDYHGGEGPLRVT-TPKAGNNELFAAMVEAGVQAGYPR 176
Query: 291 R-DLNAENQIGVMHL-QTTTRHGERLSTNGAFIRPIRKKRKNLTILTEAHVTRIICDKTP 348
DLN Q G + +T T G R ST ++ + K R NLTI+T A RI+
Sbjct: 177 TDDLNGYQQEGFGPMDRTVTPKGRRSSTARGYLD-LAKPRPNLTIVTHALTDRILFSG-- 233
Query: 349 NKHKKLVAKSVEFFYKKKLRRARAKKEVISSAGAINSPKILMLSGIGPKDHLTSLNIKTL 408
K+ V V++ + + +RA A++EV+ GAI SP+IL SG+GP D L SL+I +
Sbjct: 234 ---KRAVG--VQWLHNDQPQRATARREVLLCGGAIASPQILQRSGVGPADLLRSLDIDLV 288
Query: 409 VDLK-VGHNLQDHLTSDGIVIAFPKTATDRMY-----KKKVSDAFE---YKESRCGP--- 456
L VG NLQDHL MY KK VS A Y + G
Sbjct: 289 HHLPGVGANLQDHL---------------EMYLQYECKKPVSLAPALKLYNQPAIGAEWL 333
Query: 457 -----LASTGPLQCGVFAKTKLADSLDVPDIQFHHDPMSVRDWITNPVNASSTNMSPFAY 511
+ ++ + G F ++ D P++Q+H P+++ +NP+ A S M +
Sbjct: 334 FLGTGIGASNQFEAGGFIRSD--TEFDWPNLQYHFLPVAINYNGSNPIKAHSFQMHVGS- 390
Query: 512 YDGITVRPILLKPKSRGYIQLNATDPLWGPPLIF 545
++ SRG I + + DP P ++F
Sbjct: 391 ----------MRSPSRGRIHVRSKDPREHPSILF 414
>sp|Q8YFY2|BETA_BRUME Choline dehydrogenase OS=Brucella melitensis biotype 1 (strain 16M
/ ATCC 23456 / NCTC 10094) GN=betA PE=3 SV=2
Length = 549
Score = 183 bits (465), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 139/440 (31%), Positives = 212/440 (48%), Gaps = 46/440 (10%)
Query: 116 MTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIEE--PFFADVPGLAPLISRSNIDW 173
M DF+IIG+GSAG +A RLSE ++ V+++E G+ + P L+ ++ DW
Sbjct: 1 MEADFVIIGSGSAGSAMAYRLSEDGRYSVIVIEYGVPDVGPLIQMPAALSFPMNMETYDW 60
Query: 174 NYMTMPEPHACKARPNGRCYWA-RGKVMGGSSTINYMIYARGNAEDYDEWEAMGNEGWGY 232
+ + PEPH GR RGKV+GGSS+IN M+Y RG+A D+D W G GW Y
Sbjct: 61 GFSSEPEPHI-----RGRSLVTPRGKVLGGSSSINGMVYVRGHACDFDHWSQSGARGWAY 115
Query: 233 DEVLEYFKKSEDNEDKEIYHKNPEYHGKGGYQTVEWLPYADKNLPVLIKAWKEKGYP-ER 291
+VL YFK+ E+++ + + G G V+ + ++A + G+
Sbjct: 116 ADVLPYFKRMENSQGGQ-----EGWRGTNGPLYVQRGKRDNPLFHAFVEAGHQAGFEVTD 170
Query: 292 DLNAENQIGVMHLQTTTRHGERLSTNGAFIRPIRKKRKNLTILTEAHVTRIICDKTPNKH 351
D N E Q G ++ T +G R S A+++P KR N+ L + +I+ +
Sbjct: 171 DYNGEKQEGFGPMEQTIHNGRRWSAANAYLKPA-LKRPNVK-LVKGFARKIVLEG----- 223
Query: 352 KKLVAKSVEFFYKKKLRRARAKKEVISSAGAINSPKILMLSGIGPKDHLTSLNIKTLVDL 411
K+ V VE + RA++EVI +A +INSPK+LMLSGIGP HL I + D
Sbjct: 224 KRAVG--VEIEAGRTFSTIRARREVIIAASSINSPKLLMLSGIGPAAHLKEHGIDLVADR 281
Query: 412 -KVGHNLQDHLTSDGIVIAFPKTATDRMYKK-----KVSDAFEYKESRCGPLASTGPLQC 465
VG NLQDHL + I T +Y K K E+ + G +T +
Sbjct: 282 PGVGQNLQDHLE---VYIQQECTQPITLYSKLNLFSKARIGVEWLLFKTGD-GATNHFES 337
Query: 466 GVFAKTKLADSLDVPDIQFHHDPMSVRDWITNPVNASSTNMSPFAYYDGITVRPILLKPK 525
F ++K ++ PDIQ+H P+++R + A G ++ K
Sbjct: 338 AAFVRSKAG--VEYPDIQYHFLPVAIR-----------YDGKAAAQSHGFQAHVGPMRSK 384
Query: 526 SRGYIQLNATDPLWGPPLIF 545
SRG + L + +P P + F
Sbjct: 385 SRGSVTLRSANPREKPVIKF 404
>sp|B9JBA2|BETA_AGRRK Choline dehydrogenase OS=Agrobacterium radiobacter (strain K84 /
ATCC BAA-868) GN=betA PE=3 SV=1
Length = 549
Score = 183 bits (464), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 144/442 (32%), Positives = 213/442 (48%), Gaps = 50/442 (11%)
Query: 116 MTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIEE--PFFADVPGLAPLISRSNIDW 173
M DF+IIG+GSAG +A+RLSE K V++LE G + PF LA +S +W
Sbjct: 1 MQADFVIIGSGSAGSAMASRLSEDGKHTVIVLEFGGSDVGPFIQMPAALAWPMSMDRYNW 60
Query: 174 NYMTMPEPHACKARPNGRCYWARGKVMGGSSTINYMIYARGNAEDYDEWEAMGNEGWGYD 233
Y++ PEP N R RGKV+GGSS+IN M+Y RG+AED++ WE +G +GW Y
Sbjct: 61 GYLSEPEPQLN----NRRITAPRGKVIGGSSSINGMVYVRGHAEDFNRWEELGAQGWAYA 116
Query: 234 EVLEYFKKSEDNEDKEIYHKNPEYHGKGGYQTVEWLPYADKNLPVLIKAWKEKGY-PERD 292
+VL YFK+ E + E + G G V + I+A K+ G+ D
Sbjct: 117 DVLPYFKRMEHSHGGE-----EGWRGTDGPLHVRRGDARNPLFHAFIEAGKQAGFEATED 171
Query: 293 LNAENQIGVMHLQTTTRHGERLSTNGAFIRPIRKKRKNLTILTEAHVTRIICDKTPNKHK 352
N Q G ++ TT G R S A+++P KR N+ ++ R K ++
Sbjct: 172 YNGGKQEGFGLMEQTTWMGRRWSAATAYLKPAL-KRPNVELI------RCFARKVVIENG 224
Query: 353 KLVAKSVEFFYKKKLRRARAKKEVISSAGAINSPKILMLSGIGPKDHLTSLNIKTLVDL- 411
+ A VE K+ +A EVI SA + NSPK+LMLSGIGP HL + I+ +D
Sbjct: 225 R--ATGVEIERGGKIEIVKANSEVIVSASSFNSPKLLMLSGIGPGQHLQEMGIEVKIDRP 282
Query: 412 KVGHNLQDHLTSDGIVIAFPKTATDRM--------YKKKVSDAFEYKESRCGPLASTGPL 463
VG NLQDH+ F +T+ + Y + + A ++ + G L ++
Sbjct: 283 GVGANLQDHME-----FYFQQTSLKPVSLYSWLPWYMQGIVGA-QWMFFKSG-LGTSNQF 335
Query: 464 QCGVFAKTKLADSLDVPDIQFHHDPMSVRDWITNPVNASSTNMSPFAYYDGITVRPILLK 523
+ F ++ A + PDIQ+H P+++ A S Y+
Sbjct: 336 EACAFLRS--APGVKQPDIQYHFLPVAIS--YDGKAAAKSHGFQAHVGYN---------L 382
Query: 524 PKSRGYIQLNATDPLWGPPLIF 545
KSRG + L ++DP P + F
Sbjct: 383 SKSRGAVTLRSSDPKADPVIRF 404
>sp|B2FQ89|BETA_STRMK Choline dehydrogenase OS=Stenotrophomonas maltophilia (strain
K279a) GN=betA PE=3 SV=1
Length = 560
Score = 182 bits (463), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 159/454 (35%), Positives = 218/454 (48%), Gaps = 72/454 (15%)
Query: 118 FDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIEE---PFFADVPG-LAPLISRSNIDW 173
+D+IIIGAGSAG VLA RL+E VLLLEAG + F +P LA + +W
Sbjct: 7 YDYIIIGAGSAGNVLATRLTEDADVSVLLLEAGGPDYRLDFRTQMPAALAFPLQGKRYNW 66
Query: 174 NYMTMPEPHACKARPNGRCYWARGKVMGGSSTINYMIYARGNAEDYDEWEAM-GNEGWGY 232
Y T PEP N R RGK +GGSS IN M Y RGNA DYD W +M G E W Y
Sbjct: 67 AYKTDPEPFMN----NRRMDCGRGKGLGGSSLINGMCYIRGNAMDYDNWASMPGLEDWTY 122
Query: 233 DEVLEYFKKSEDNEDKEIYHKNPEYHGKGGYQTVEWLPYADKN--LPVLIKAWKEKGYPE 290
+ L YF+K+E + +YHG G V P A N +++A + GYP
Sbjct: 123 LDCLPYFRKAETRDIGP-----NDYHGGDGPLRVT-TPKAGNNELFAAMVEAGVQAGYPR 176
Query: 291 R-DLNAENQIGVMHL-QTTTRHGERLSTNGAFIRPIRKKRKNLTILTEAHVTRIICDKTP 348
DLN Q G + +T T G R ST ++ + K R NLTI+T A RI+
Sbjct: 177 TDDLNGYQQEGFGPMDRTVTPKGRRSSTARGYLD-LAKPRPNLTIVTHALTDRILFSG-- 233
Query: 349 NKHKKLVAKSVEFFYKKKLRRARAKKEVISSAGAINSPKILMLSGIGPKDHLTSLNIKTL 408
K+ V V++ + +RA A++EV+ GAI SP+IL SG+GP D L SL+I +
Sbjct: 234 ---KRAVG--VQWLRNDQPQRATARREVLLCGGAIASPQILQRSGVGPADLLRSLDIDLV 288
Query: 409 VDLK-VGHNLQDHLTSDGIVIAFPKTATDRMY-----KKKVSDAFE---YKESRCGP--- 456
L VG NLQDHL MY KK VS A Y + G
Sbjct: 289 HHLPGVGANLQDHL---------------EMYLQYECKKPVSLAPALKLYNQPAIGAEWL 333
Query: 457 -----LASTGPLQCGVFAKTKLADSLDVPDIQFHHDPMSVRDWITNPVNASSTNMSPFAY 511
+ ++ + G F ++ D P++Q+H P+++ +NP+ A S M +
Sbjct: 334 FLGTGIGASNQFEAGGFIRSDA--EFDWPNLQYHFLPVAINYNGSNPIKAHSFQMHVGS- 390
Query: 512 YDGITVRPILLKPKSRGYIQLNATDPLWGPPLIF 545
++ SRG I + + DP P ++F
Sbjct: 391 ----------MRSPSRGRIHVRSKDPREHPSILF 414
>sp|A9M9H8|BETA_BRUC2 Choline dehydrogenase OS=Brucella canis (strain ATCC 23365 / NCTC
10854) GN=betA PE=3 SV=1
Length = 549
Score = 182 bits (462), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 138/440 (31%), Positives = 212/440 (48%), Gaps = 46/440 (10%)
Query: 116 MTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIEE--PFFADVPGLAPLISRSNIDW 173
M DF+IIG+GSAG +A RLSE ++ V+++E G+ + P L+ ++ DW
Sbjct: 1 MEADFVIIGSGSAGSAMAYRLSEDGRYSVIVIEYGVPDVGPLIQMPAALSFPMNMETYDW 60
Query: 174 NYMTMPEPHACKARPNGRCYWA-RGKVMGGSSTINYMIYARGNAEDYDEWEAMGNEGWGY 232
+ + PEPH GR RGKV+GGSS+IN M+Y RG+A D+D W G GW Y
Sbjct: 61 GFSSEPEPHI-----GGRSLVTPRGKVLGGSSSINGMVYVRGHACDFDHWSQSGARGWAY 115
Query: 233 DEVLEYFKKSEDNEDKEIYHKNPEYHGKGGYQTVEWLPYADKNLPVLIKAWKEKGYP-ER 291
+VL YFK+ E+++ + + G G V+ + ++A + G+
Sbjct: 116 ADVLPYFKRMENSQGGQ-----EGWRGTNGPLYVQRGKRDNPLFHAFVEAGHQAGFEVAD 170
Query: 292 DLNAENQIGVMHLQTTTRHGERLSTNGAFIRPIRKKRKNLTILTEAHVTRIICDKTPNKH 351
D N E Q G ++ T +G R S A+++P KR N+ L + +I+ +
Sbjct: 171 DYNGEKQEGFGPMEQTIHNGRRWSAANAYLKPA-LKRPNVK-LVKGFARKIVLEG----- 223
Query: 352 KKLVAKSVEFFYKKKLRRARAKKEVISSAGAINSPKILMLSGIGPKDHLTSLNIKTLVDL 411
K+ V VE + RA++EVI +A +INSPK+LMLSGIGP HL I + D
Sbjct: 224 KRAVG--VEIEAGRTFSTIRARREVIIAASSINSPKLLMLSGIGPAAHLKEHGIDLVADR 281
Query: 412 -KVGHNLQDHLTSDGIVIAFPKTATDRMYKK-----KVSDAFEYKESRCGPLASTGPLQC 465
VG NLQDHL + I T +Y + K E+ + G +T +
Sbjct: 282 PGVGQNLQDHLE---VYIQQECTQPITLYSELNLFSKARIGVEWLLFKTGD-GATNHFES 337
Query: 466 GVFAKTKLADSLDVPDIQFHHDPMSVRDWITNPVNASSTNMSPFAYYDGITVRPILLKPK 525
F ++K ++ PDIQ+H P+++R + A G ++ K
Sbjct: 338 AAFVRSKAG--VEYPDIQYHFLPVAIR-----------YDGKAAAQSHGFQAHVGPMRSK 384
Query: 526 SRGYIQLNATDPLWGPPLIF 545
SRG + L + +P P + F
Sbjct: 385 SRGSVTLRSANPREKPVIKF 404
>sp|Q8G1Z8|BETA_BRUSU Choline dehydrogenase OS=Brucella suis biovar 1 (strain 1330)
GN=betA PE=3 SV=1
Length = 549
Score = 182 bits (462), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 138/440 (31%), Positives = 212/440 (48%), Gaps = 46/440 (10%)
Query: 116 MTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIEE--PFFADVPGLAPLISRSNIDW 173
M DF+IIG+GSAG +A RLSE ++ V+++E G+ + P L+ ++ DW
Sbjct: 1 MEADFVIIGSGSAGSAMAYRLSENGRYSVIVIEYGVPDVGPLIQMPAALSFPMNMETYDW 60
Query: 174 NYMTMPEPHACKARPNGRCYWA-RGKVMGGSSTINYMIYARGNAEDYDEWEAMGNEGWGY 232
+ + PEPH GR RGKV+GGSS+IN M+Y RG+A D+D W G GW Y
Sbjct: 61 GFSSEPEPHI-----GGRSLVTPRGKVLGGSSSINGMVYVRGHACDFDHWSQSGARGWAY 115
Query: 233 DEVLEYFKKSEDNEDKEIYHKNPEYHGKGGYQTVEWLPYADKNLPVLIKAWKEKGYP-ER 291
+VL YFK+ E+++ + + G G V+ + ++A + G+
Sbjct: 116 ADVLPYFKRMENSQGGQ-----EGWRGTNGPLYVQRGKRDNPLFHAFVEAGHQAGFEVTD 170
Query: 292 DLNAENQIGVMHLQTTTRHGERLSTNGAFIRPIRKKRKNLTILTEAHVTRIICDKTPNKH 351
D N E Q G ++ T +G R S A+++P KR N+ L + +I+ +
Sbjct: 171 DYNGEKQEGFGPMEQTIHNGRRWSAANAYLKPA-LKRPNVK-LVKGFARKIVLEG----- 223
Query: 352 KKLVAKSVEFFYKKKLRRARAKKEVISSAGAINSPKILMLSGIGPKDHLTSLNIKTLVDL 411
K+ V VE + RA++EVI +A +INSPK+LMLSGIGP HL I + D
Sbjct: 224 KRAVG--VEIEAGRTFSTIRARREVIIAASSINSPKLLMLSGIGPAAHLKEHGIDLVADR 281
Query: 412 -KVGHNLQDHLTSDGIVIAFPKTATDRMYKK-----KVSDAFEYKESRCGPLASTGPLQC 465
VG NLQDHL + I T +Y + K E+ + G +T +
Sbjct: 282 PGVGQNLQDHLE---VYIQQECTQPITLYSELNLFSKARIGVEWLLFKTGD-GATNHFES 337
Query: 466 GVFAKTKLADSLDVPDIQFHHDPMSVRDWITNPVNASSTNMSPFAYYDGITVRPILLKPK 525
F ++K ++ PDIQ+H P+++R + A G ++ K
Sbjct: 338 AAFVRSKAG--VEYPDIQYHFLPVAIR-----------YDGKAAAQSHGFQAHVGPMRSK 384
Query: 526 SRGYIQLNATDPLWGPPLIF 545
SRG + L + +P P + F
Sbjct: 385 SRGSVTLRSANPREKPVIKF 404
>sp|Q3K5H3|BETA_PSEPF Choline dehydrogenase OS=Pseudomonas fluorescens (strain Pf0-1)
GN=betA PE=3 SV=1
Length = 567
Score = 182 bits (461), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 155/451 (34%), Positives = 223/451 (49%), Gaps = 50/451 (11%)
Query: 118 FDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIEE---PFFADVPG-LAPLISRSNIDW 173
FD+II+GAGSAG LA RL+E + VLLLEAG + F +P LA + +W
Sbjct: 5 FDYIIVGAGSAGNTLATRLTEDEGVTVLLLEAGGPDYRFDFRTQMPAALAFPLQGRRYNW 64
Query: 174 NYMTMPEPHACKARPNGRCYWARGKVMGGSSTINYMIYARGNAEDYDEWEAM-GNEGWGY 232
Y T PEPH R RGK +GGSS IN M Y RGNA DYD W + G E W Y
Sbjct: 65 AYETDPEPHM----DGRRMECGRGKGLGGSSLINGMCYIRGNAMDYDGWAKLPGLEDWSY 120
Query: 233 DEVLEYFKKSEDNEDKEIYHKNP-EYHGKGGYQTVEWLPYADKN--LPVLIKAWKEKGYP 289
+ L YF+K+E + P +YHG G +V P A N +++A + GYP
Sbjct: 121 LDCLPYFRKAETRD------IGPNDYHGGDGPVSVT-TPKAGNNPLFHAMVEAGVQAGYP 173
Query: 290 E-RDLNAENQIGVMHL-QTTTRHGERLSTNGAFIRPIRKKRKNLTILTEAHVTRIICDKT 347
DLN Q G + +T T +G R ST ++ + KKR LTI+T A + DK
Sbjct: 174 RTEDLNGYQQEGFGPMDRTVTPNGRRASTARGYLD-VAKKRSTLTIVTHA-----LTDKV 227
Query: 348 PNKHKKLVAKSVEFFYKKKLRRARAKKEVISSAGAINSPKILMLSGIGPKDHLTSLNIKT 407
+ K+ V ++ ARA+KEVI +GAI SP++L SG+GP L SL+I
Sbjct: 228 LFEGKRAVGVRYLVGAAEERVEARARKEVIVCSGAIASPQLLQRSGVGPAKLLESLDIPV 287
Query: 408 LVDL-KVGHNLQDHLTSDGIVIAFPKTATDRMYKKKV-----SDAFEYKESRCGPLASTG 461
+ DL VG NLQDHL + + + T +Y + + E+ + G + ++
Sbjct: 288 VHDLPGVGENLQDHLE---LYLQYACTQPVSLYPSLLWYNQPAIGAEWLFNGTG-IGASN 343
Query: 462 PLQCGVFAKTKLADSLDVPDIQFHHDPMSVRDWITNPVNASSTNMSPFAYYDGITVRPIL 521
+ G F +T+ + P+IQ+H P+++ +N V F + G P
Sbjct: 344 QFEAGGFIRTR--PEFEWPNIQYHFLPVAINYNGSNGVKEHG-----FQAHMGSMRSP-- 394
Query: 522 LKPKSRGYIQLNATDPLWGPPLIFPKFFTKK 552
SRG +Q+ + DP P ++F T++
Sbjct: 395 ----SRGRVQVKSKDPRQHPSILFNYMATEQ 421
>sp|B4EX94|BETA_PROMH Choline dehydrogenase OS=Proteus mirabilis (strain HI4320) GN=betA
PE=3 SV=1
Length = 555
Score = 181 bits (460), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 157/464 (33%), Positives = 226/464 (48%), Gaps = 57/464 (12%)
Query: 116 MTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIEE---PFFADVP-GLAPLISRSNI 171
M +D+IIIGAGSAG VLA RL+E VLLLEAG + F +P LA +
Sbjct: 1 MVYDYIIIGAGSAGNVLATRLTEDPDVTVLLLEAGGPDYRFDFRTQMPAALAYPLQGRRY 60
Query: 172 DWNYMTMPEPHACKARPNGRCYWARGKVMGGSSTINYMIYARGNAEDYDEWEAM-GNEGW 230
+W Y T PEPH N R RGK +GGSS IN M Y RGNA D+DEW + G E W
Sbjct: 61 NWAYETEPEPHMN----NRRMECGRGKGLGGSSLINGMCYIRGNAMDFDEWAKLPGLEDW 116
Query: 231 GYDEVLEYFKKSEDNEDKEIYHKNPEYHGKGGYQTVEWLPYADKNL--PVLIKAWKEKGY 288
Y L YF+K+E + +YHG G +V P N+ +++A + GY
Sbjct: 117 NYLNCLPYFRKAETRDIGA-----NDYHGDSGPVSVT-TPKKGNNVLFHAMVEAGVQAGY 170
Query: 289 PER-DLNAENQIGVMHL-QTTTRHGERLSTNGAFIRPIRKKRKNLTILTEAHVTRIICDK 346
P DLN Q G + +T T HG R ST ++ K RKNLTI E H T I +
Sbjct: 171 PRTDDLNGYQQEGFGPMDRTVTPHGRRASTARGYLDQA-KSRKNLTI--ETHATTDIIEF 227
Query: 347 TPNKHKKLVAKSVEFFYKKKL--RRARAKKEVISSAGAINSPKILMLSGIGPKDHLTSLN 404
K A V +F + +A+KE++ AGAI SP+IL SG+GP+D L +
Sbjct: 228 EGKK-----ASGVRYFKGTNTTPQHVKARKEILLCAGAIASPQILQRSGVGPEDVLNEFD 282
Query: 405 IKTLVDLK-VGHNLQDHLTSDGIVIAFPKTATDRMY-------KKKVSDAFEYKESRCGP 456
I + L VG NLQDHL + + + +Y + K+ + +K + G
Sbjct: 283 ISPVHVLPGVGQNLQDHLE---MYLQYECKQPVSLYPALKWYNQPKIGAEWLFKGTGIG- 338
Query: 457 LASTGPLQCGVFAKTKLADSLDVPDIQFHHDPMSVRDWITNPVNASSTNMSPFAYYDGIT 516
++ + G F ++ ++ P+IQFH P+++ N +++ + F + G
Sbjct: 339 --ASNQFEAGGFIRS--SEKFAWPNIQFHFLPVAI-----NYNGSNAVEVHGFQAHVGSM 389
Query: 517 VRPILLKPKSRGYIQLNATDPLWGPPLIFPKFFTKKPDLDVFVA 560
P SRG I++ + DP P ++F + + + D F A
Sbjct: 390 RSP------SRGRIKITSRDPHQHPSILF-NYMSTEQDWQEFRA 426
>sp|Q88CW6|BETA_PSEPK Choline dehydrogenase OS=Pseudomonas putida (strain KT2440) GN=betA
PE=3 SV=1
Length = 565
Score = 181 bits (459), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 156/451 (34%), Positives = 226/451 (50%), Gaps = 50/451 (11%)
Query: 118 FDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIEE---PFFADVPG-LAPLISRSNIDW 173
FD+II+GAGSAG LA RL+E VLLLEAG + F +P LA + +W
Sbjct: 5 FDYIIVGAGSAGNTLATRLTEDAGVTVLLLEAGGPDYRFDFRTQMPAALAFPLQGRRYNW 64
Query: 174 NYMTMPEPHACKARPNGRCYWARGKVMGGSSTINYMIYARGNAEDYDEW-EAMGNEGWGY 232
Y T PEP+ R C RGK +GGSS IN M Y RGNA D+D W E G E W Y
Sbjct: 65 AYETDPEPYMDGRRME--C--GRGKGLGGSSLINGMCYIRGNAMDFDGWAELPGLEDWTY 120
Query: 233 DEVLEYFKKSEDNEDKEIYHKNP-EYHGKGGYQTVEWLPYADKN--LPVLIKAWKEKGYP 289
+ L YF+K+E + P +YHG G +V P A N +++A + GYP
Sbjct: 121 LDCLPYFRKAETRD------IGPNDYHGGEGPVSVT-TPKAGNNPLFHAMVEAGVQAGYP 173
Query: 290 E-RDLNAENQIGVMHL-QTTTRHGERLSTNGAFIRPIRKKRKNLTILTEAHVTRIICDKT 347
DLN Q G + +T T++G R ST ++ KKR NLTI+T A R++ D
Sbjct: 174 RTEDLNGYQQEGFGPMDRTVTKNGRRSSTARGYLDQA-KKRPNLTIVTHALTDRVLFDG- 231
Query: 348 PNKHKKLVAKSVEFFYKKKLRRARAKKEVISSAGAINSPKILMLSGIGPKDHLTSLNIKT 407
K+ + + ++ ARA+KEVI S+GAI SP++L SG+GP+ L SL+I
Sbjct: 232 ----KRAIGVTYLVGDSEERVEARARKEVIVSSGAIASPQLLQRSGVGPRALLESLDIPV 287
Query: 408 LVDL-KVGHNLQDHLTSDGIVIAFPKTATDRMYKKKV-----SDAFEYKESRCGPLASTG 461
+ DL VG NLQDHL + + + T +Y + + E+ + G + ++
Sbjct: 288 VHDLPGVGENLQDHLE---LYLQYACTQPVSLYPSLLWWNQPAIGAEWMFNGTG-IGASN 343
Query: 462 PLQCGVFAKTKLADSLDVPDIQFHHDPMSVRDWITNPVNASSTNMSPFAYYDGITVRPIL 521
+ G F +T+ P+IQ+H P+++ +N V F + G P
Sbjct: 344 QFEAGGFIRTR--PEFKWPNIQYHFLPVAINYNGSNGVKEHG-----FQAHMGSMRSP-- 394
Query: 522 LKPKSRGYIQLNATDPLWGPPLIFPKFFTKK 552
+RG IQ+ + DP P ++F T++
Sbjct: 395 ----ARGRIQVKSKDPRQHPSILFNYMSTEQ 421
>sp|B0KN19|BETA_PSEPG Choline dehydrogenase OS=Pseudomonas putida (strain GB-1) GN=betA
PE=3 SV=1
Length = 565
Score = 181 bits (459), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 156/453 (34%), Positives = 225/453 (49%), Gaps = 54/453 (11%)
Query: 118 FDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIEE---PFFADVPG-LAPLISRSNIDW 173
FD+II+GAGSAG LA RL+E VLLLEAG + F +P LA + +W
Sbjct: 5 FDYIIVGAGSAGNTLATRLTEDAGVTVLLLEAGGPDYRFDFRTQMPAALAFPLQGRRYNW 64
Query: 174 NYMTMPEPHACKARPNGRCYWARGKVMGGSSTINYMIYARGNAEDYDEW-EAMGNEGWGY 232
Y T PEPH R C RGK +GGSS IN M Y RGNA D+D W E G + W Y
Sbjct: 65 AYETDPEPHMDGRRME--C--GRGKGLGGSSLINGMCYIRGNAMDFDGWAELPGLQDWTY 120
Query: 233 DEVLEYFKKSEDNEDKEIYHKNP-EYHGKGGYQTVEWLPYADKN--LPVLIKAWKEKGYP 289
+ L YF+K+E + P +YHG G +V P A N +++A + GYP
Sbjct: 121 LDCLPYFRKAETRD------IGPNDYHGGEGPVSVA-TPKAGNNPLFHAMVEAGVQAGYP 173
Query: 290 E-RDLNAENQIGVMHL-QTTTRHGERLSTNGAFIRPIRKKRKNLTILTEAHVTRIICDKT 347
DLN Q G + ++ T++G R ST ++ KKR NLTI+T A R++ D
Sbjct: 174 RTEDLNGYQQEGFGPMDRSVTKNGRRSSTARGYLDQA-KKRPNLTIVTHALSDRVLFDG- 231
Query: 348 PNKHKKLVAKSVEFFYKKKLRRARAKKEVISSAGAINSPKILMLSGIGPKDHLTSLNIKT 407
K+ V + ++ ARA+KEVI S+GAI SP++L SG+GP+ L SL+I
Sbjct: 232 ----KRAVGVTYLVGDSEERVEARARKEVIVSSGAIASPQLLQRSGVGPRALLESLDIPV 287
Query: 408 LVDL-KVGHNLQDHLTSDGIVIAFPKTATDRMY-------KKKVSDAFEYKESRCGPLAS 459
+ DL VG NLQDHL + + + T +Y + + + +K + G +
Sbjct: 288 VHDLPGVGENLQDHLE---LYLQYACTQPVSLYPSLLWWNQPAIGAEWMFKGTGIG---A 341
Query: 460 TGPLQCGVFAKTKLADSLDVPDIQFHHDPMSVRDWITNPVNASSTNMSPFAYYDGITVRP 519
+ + G F +T+ P+IQ+H P+++ +N V F + G P
Sbjct: 342 SNQFEAGGFIRTR--PEFKWPNIQYHFLPVAINYNGSNGVKEHG-----FQAHMGSMRSP 394
Query: 520 ILLKPKSRGYIQLNATDPLWGPPLIFPKFFTKK 552
+RG IQ + DP P ++F T++
Sbjct: 395 ------ARGRIQAKSKDPRQHPSILFNYMSTEQ 421
>sp|Q9L4K0|BETA2_CHRSD Choline dehydrogenase OS=Chromohalobacter salexigens (strain DSM
3043 / ATCC BAA-138 / NCIMB 13768) GN=betA PE=1 SV=1
Length = 558
Score = 180 bits (457), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 161/459 (35%), Positives = 223/459 (48%), Gaps = 57/459 (12%)
Query: 118 FDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIEE---PFFADVP-GLAPLISRSNIDW 173
FD+IIIGAGSAG VLA RL+E VLLLEAG + F +P LA + +W
Sbjct: 7 FDYIIIGAGSAGNVLATRLTEDSDVSVLLLEAGGPDYRFDFRTQMPAALAYPLQGKRYNW 66
Query: 174 NYMTMPEPHACKARPNGRCYWARGKVMGGSSTINYMIYARGNAEDYDEWEAM-GNEGWGY 232
+ T PEPH N R RGK +GGSS IN M Y RGNA DYD W G E W Y
Sbjct: 67 AFETDPEPHM----DNRRMECGRGKGLGGSSLINGMCYIRGNALDYDHWAKQPGLEEWDY 122
Query: 233 DEVLEYFKKSEDNEDKEIYHKNP-EYHGKGGYQTVEWLPYADKN--LPVLIKAWKEKGYP 289
L YFKKSE + P +YHG G +V P A N I+A K+ GYP
Sbjct: 123 LSCLPYFKKSETRD------IGPNDYHGGDGPVSVT-TPKAGNNPLYRTFIEAGKQAGYP 175
Query: 290 E-RDLNAENQIGVMHL-QTTTRHGERLSTNGAFIRPIRKKRKNLTILTEAHVTRIICDKT 347
E D+N Q G + + T G R ST ++ K+R NLTI TR + D
Sbjct: 176 ETEDVNGYQQEGFGPMDRFVTPKGRRASTARGYLD-TAKQRSNLTI-----ETRAVTDVI 229
Query: 348 PNKHKKLVAKSVEFFYKKKLRRARAKKEVISSAGAINSPKILMLSGIGPKDHLTSLNIKT 407
+ K+ V V + K + ++ARA++EV+ GAI SP+IL SG+G + L L I
Sbjct: 230 EFEGKRAVG--VRYEQKGQPKQARARREVLLCGGAIASPQILQRSGVGNPEWLKELGIPV 287
Query: 408 LVDLK-VGHNLQDHLTSDGIVIAFPKTATDRMY-------KKKVSDAFEYKESRCGPLAS 459
+ +L VG NLQDHL + I + +Y + K+ + +K + G AS
Sbjct: 288 VHELPGVGENLQDHLE---MYIQYECKEPISLYPALKWYNQPKIGAEWLFKGTGVG--AS 342
Query: 460 TGPLQCGVFAKTKLADSLDVPDIQFHHDPMSVRDWITNPVNASSTNMSPFAYYDGITVRP 519
CG F +++ D + P++Q+H P+++ S N G
Sbjct: 343 NQFESCG-FIRSR--DDEEWPNLQYHFLPIAI-----------SYNGKSAVQAHGFQAHV 388
Query: 520 ILLKPKSRGYIQLNATDPLWGPPLIFPKFFTKKPDLDVF 558
++ +SRG I+L + DP P ++F + K+ D + F
Sbjct: 389 GSMRSESRGRIRLTSKDPHAAPSILF-NYMAKEKDWEEF 426
>sp|Q9X2M2|BETA_STAXY Choline dehydrogenase OS=Staphylococcus xylosus GN=betA PE=3 SV=1
Length = 560
Score = 180 bits (456), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 151/438 (34%), Positives = 212/438 (48%), Gaps = 39/438 (8%)
Query: 117 TFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIEE-PFFADVPGLAPLISRSN---ID 172
++D+IIIG GSAG VL RLSE VL+LEAG + P+ + A L+ + D
Sbjct: 4 SYDYIIIGGGSAGSVLGGRLSEDVSNNVLVLEAGRSDYPWDLLIQMPAALMYPAGNKLYD 63
Query: 173 WNYMTMPEPHACKARPNGRCYWARGKVMGGSSTINYMIYARGNAEDYDEW-EAMGNEGWG 231
W Y T PEPH R G ARGKV+GGSS+IN MIY RGN DY++W + G E W
Sbjct: 64 WIYETTPEPH-MDGRKVGH---ARGKVLGGSSSINGMIYQRGNPMDYEKWAKPEGMESWD 119
Query: 232 YDEVLEYFKKSEDNEDKEIYHKNPEYHGKGGYQTVEWLPYADKNLPVLIKAWKEKGYPER 291
Y L YFK+ E + K Y G G + P + A E GY +
Sbjct: 120 YAHCLPYFKRLETTFGSK---KGDPYRGHHGPIKLRRGPADNPLFQAFFDAGVEAGYNKT 176
Query: 292 -DLNAENQIGVMHLQTTTRHGERLSTNGAFIRPIRKKRKNLTILTEAHVTRIICDKTPNK 350
D+N Q G + +G R+S + A++ P K RKNL + T A VT++ + NK
Sbjct: 177 PDVNGFRQEGFGPFDSQVHNGRRVSASRAYLHPAMK-RKNLEVQTRAFVTKLNFEG--NK 233
Query: 351 HKKLVAKSVEFFYKKKLRRARAKKEVISSAGAINSPKILMLSGIGPKDHLTSLNIKTLVD 410
+ F K + KEVI S GAINSP++L LSGIG +HL SL I+ +
Sbjct: 234 VTGVT------FKKNGKEHTESAKEVILSGGAINSPQLLQLSGIGDSEHLRSLGIEPRIH 287
Query: 411 LK-VGHNLQDHL-TSDGIVIAFPKTATDRMYKKKVS-DAFEYKESRCGPLASTGPLQCGV 467
L VG N +DHL P + + K K+ ++ R G AS + G
Sbjct: 288 LPGVGENFEDHLEVYVQHACKQPVSMQPSLNKLKMPFIGLQWILGRKGAAASNH-FEGGG 346
Query: 468 FAKTKLADSLDVPDIQFHHDPMSVRDWITNPVNASSTNMSPFAYYDGITVRPILLKPKSR 527
F ++ D +D P++ FH P++VR +P A+ + V P+ SR
Sbjct: 347 FVRSN--DDVDYPNLMFHFLPIAVR---------YDGTKAPAAHGYQVHVGPMY--SNSR 393
Query: 528 GYIQLNATDPLWGPPLIF 545
G++++ + DP P +F
Sbjct: 394 GHLKIKSKDPFEKPEFVF 411
>sp|B0V945|BETA_ACIBY Choline dehydrogenase OS=Acinetobacter baumannii (strain AYE)
GN=betA PE=3 SV=1
Length = 552
Score = 180 bits (456), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 153/451 (33%), Positives = 222/451 (49%), Gaps = 49/451 (10%)
Query: 118 FDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIEE---PFFADVP-GLAPLISRSNIDW 173
+D+IIIGAGSAG VLA RL+E K VLLLEAG + F +P LA + +W
Sbjct: 6 YDYIIIGAGSAGNVLAARLTEDKDTTVLLLEAGGPDYRLDFRTQMPAALAYPLQGRRYNW 65
Query: 174 NYMTMPEPHACKARPNGRCYWARGKVMGGSSTINYMIYARGNAEDYDEWEAM-GNEGWGY 232
Y+T PEPH N R RGK +GGSS IN M Y RGNA D ++W G E W Y
Sbjct: 66 AYLTDPEPHMN----NRRMECGRGKGLGGSSLINGMCYIRGNAMDLEQWATHKGLENWTY 121
Query: 233 DEVLEYFKKSEDNEDKEIYHKNPEYHGKGGYQTVEWLPYADKNL--PVLIKAWKEKGYPE 290
+ L Y+KK+E + +YHG G +V P N+ +++A + GYP
Sbjct: 122 ADCLPYYKKAETRDI-----GGNDYHGDSGPVSVA-TPKNGNNVLFHAMVEAGVQAGYPR 175
Query: 291 R-DLNAENQIGVMHL-QTTTRHGERLSTNGAFIRPIRKKRKNLTILTEAHVTRIICDKTP 348
DLN Q G + +T T G R ST ++ + K R NLTILT A +I+
Sbjct: 176 TDDLNGYQQEGFGPMDRTVTPKGRRSSTARGYL-DMAKGRPNLTILTHATTNKILF---- 230
Query: 349 NKHKKLVAKSVEFFYKKKLRRARAKKEVISSAGAINSPKILMLSGIGPKDHLTSLNIKTL 408
N+ + + + + + L+RA K+EV+ AGAI SP+IL SG+G L S++I +
Sbjct: 231 NQKQAIGVEYIIGADQNNLQRALVKREVLLCAGAIASPQILQRSGVGQSTFLKSMDIDVV 290
Query: 409 VDL-KVGHNLQDHL------TSDGIVIAFPKTATDRMYKKKVSDAFEYKESRCGPLASTG 461
DL VG NLQDHL V +P + Y + A E+ + G + ++
Sbjct: 291 HDLPGVGENLQDHLEMYLQYKCKQPVSLYPAL---KWYNQPAIGA-EWLFNGTG-IGASN 345
Query: 462 PLQCGVFAKTKLADSLDVPDIQFHHDPMSVRDWITNPVNASSTNMSPFAYYDGITVRPIL 521
+ G F ++ +D P+IQ+H P+++ +N V G
Sbjct: 346 QFEAGGFIRS--SDEFKWPNIQYHFLPVAINYNGSNAVKEH-----------GFQAHVGS 392
Query: 522 LKPKSRGYIQLNATDPLWGPPLIFPKFFTKK 552
++ SRG I+L + DP P ++F T++
Sbjct: 393 MRSPSRGRIKLKSKDPFAHPSILFNYMSTEQ 423
>sp|B0VST3|BETA_ACIBS Choline dehydrogenase OS=Acinetobacter baumannii (strain SDF)
GN=betA PE=3 SV=1
Length = 552
Score = 180 bits (456), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 153/451 (33%), Positives = 222/451 (49%), Gaps = 49/451 (10%)
Query: 118 FDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIEE---PFFADVP-GLAPLISRSNIDW 173
+D+IIIGAGSAG VLA RL+E K VLLLEAG + F +P LA + +W
Sbjct: 6 YDYIIIGAGSAGNVLAARLTEDKDTTVLLLEAGGPDYRLDFRTQMPAALAYPLQGRRYNW 65
Query: 174 NYMTMPEPHACKARPNGRCYWARGKVMGGSSTINYMIYARGNAEDYDEWEAM-GNEGWGY 232
Y+T PEPH N R RGK +GGSS IN M Y RGNA D ++W G E W Y
Sbjct: 66 AYLTDPEPHMN----NRRMECGRGKGLGGSSLINGMCYIRGNAMDLEQWATHKGLENWTY 121
Query: 233 DEVLEYFKKSEDNEDKEIYHKNPEYHGKGGYQTVEWLPYADKNL--PVLIKAWKEKGYPE 290
+ L Y+KK+E + +YHG G +V P N+ +++A + GYP
Sbjct: 122 ADCLPYYKKAETRDI-----GGNDYHGDSGPVSVA-TPKNGNNVLFHAMVEAGVQAGYPR 175
Query: 291 R-DLNAENQIGVMHL-QTTTRHGERLSTNGAFIRPIRKKRKNLTILTEAHVTRIICDKTP 348
DLN Q G + +T T G R ST ++ + K R NLTILT A +I+
Sbjct: 176 TDDLNGYQQEGFGPMDRTVTPKGRRSSTARGYL-DMAKGRPNLTILTHATTNKILF---- 230
Query: 349 NKHKKLVAKSVEFFYKKKLRRARAKKEVISSAGAINSPKILMLSGIGPKDHLTSLNIKTL 408
N+ + + + + + L+RA K+EV+ AGAI SP+IL SG+G L S++I +
Sbjct: 231 NQKQAIGVEYIIGADQNNLQRALVKREVLLCAGAIASPQILQRSGVGQSTFLKSMDIDVV 290
Query: 409 VDL-KVGHNLQDHL------TSDGIVIAFPKTATDRMYKKKVSDAFEYKESRCGPLASTG 461
DL VG NLQDHL V +P + Y + A E+ + G + ++
Sbjct: 291 HDLPGVGENLQDHLEMYLQYKCKQPVSLYPAL---KWYNQPAIGA-EWLFNGTG-IGASN 345
Query: 462 PLQCGVFAKTKLADSLDVPDIQFHHDPMSVRDWITNPVNASSTNMSPFAYYDGITVRPIL 521
+ G F ++ +D P+IQ+H P+++ +N V G
Sbjct: 346 QFEAGGFIRS--SDEFKWPNIQYHFLPVAINYNGSNAVKEH-----------GFQAHVGS 392
Query: 522 LKPKSRGYIQLNATDPLWGPPLIFPKFFTKK 552
++ SRG I+L + DP P ++F T++
Sbjct: 393 MRSPSRGRIKLKSKDPFAHPSILFNYMSTEQ 423
>sp|B2HV79|BETA_ACIBC Choline dehydrogenase OS=Acinetobacter baumannii (strain ACICU)
GN=betA PE=3 SV=1
Length = 552
Score = 180 bits (456), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 153/451 (33%), Positives = 222/451 (49%), Gaps = 49/451 (10%)
Query: 118 FDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIEE---PFFADVP-GLAPLISRSNIDW 173
+D+IIIGAGSAG VLA RL+E K VLLLEAG + F +P LA + +W
Sbjct: 6 YDYIIIGAGSAGNVLAARLTEDKDTTVLLLEAGGPDYRLDFRTQMPAALAYPLQGRRYNW 65
Query: 174 NYMTMPEPHACKARPNGRCYWARGKVMGGSSTINYMIYARGNAEDYDEWEAM-GNEGWGY 232
Y+T PEPH N R RGK +GGSS IN M Y RGNA D ++W G E W Y
Sbjct: 66 AYLTDPEPHMN----NRRMECGRGKGLGGSSLINGMCYIRGNAMDLEQWATHKGLENWTY 121
Query: 233 DEVLEYFKKSEDNEDKEIYHKNPEYHGKGGYQTVEWLPYADKNL--PVLIKAWKEKGYPE 290
+ L Y+KK+E + +YHG G +V P N+ +++A + GYP
Sbjct: 122 ADCLPYYKKAETRDI-----GGNDYHGDSGPVSVA-TPKNGNNVLFHAMVEAGVQAGYPR 175
Query: 291 R-DLNAENQIGVMHL-QTTTRHGERLSTNGAFIRPIRKKRKNLTILTEAHVTRIICDKTP 348
DLN Q G + +T T G R ST ++ + K R NLTILT A +I+
Sbjct: 176 TDDLNGYQQEGFGPMDRTVTPKGRRSSTARGYL-DMAKGRPNLTILTHATTNKILF---- 230
Query: 349 NKHKKLVAKSVEFFYKKKLRRARAKKEVISSAGAINSPKILMLSGIGPKDHLTSLNIKTL 408
N+ + + + + + L+RA K+EV+ AGAI SP+IL SG+G L S++I +
Sbjct: 231 NQKQAIGVEYIIGADQNNLQRALVKREVLLCAGAIASPQILQRSGVGQSTFLKSMDIDVV 290
Query: 409 VDL-KVGHNLQDHL------TSDGIVIAFPKTATDRMYKKKVSDAFEYKESRCGPLASTG 461
DL VG NLQDHL V +P + Y + A E+ + G + ++
Sbjct: 291 HDLPGVGENLQDHLEMYLQYKCKQPVSLYPAL---KWYNQPAIGA-EWLFNGTG-IGASN 345
Query: 462 PLQCGVFAKTKLADSLDVPDIQFHHDPMSVRDWITNPVNASSTNMSPFAYYDGITVRPIL 521
+ G F ++ +D P+IQ+H P+++ +N V G
Sbjct: 346 QFEAGGFIRS--SDEFKWPNIQYHFLPVAINYNGSNAVKEH-----------GFQAHVGS 392
Query: 522 LKPKSRGYIQLNATDPLWGPPLIFPKFFTKK 552
++ SRG I+L + DP P ++F T++
Sbjct: 393 MRSPSRGRIKLKSKDPFAHPSILFNYMSTEQ 423
>sp|B7I895|BETA_ACIB5 Choline dehydrogenase OS=Acinetobacter baumannii (strain AB0057)
GN=betA PE=3 SV=1
Length = 552
Score = 180 bits (456), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 153/451 (33%), Positives = 222/451 (49%), Gaps = 49/451 (10%)
Query: 118 FDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIEE---PFFADVP-GLAPLISRSNIDW 173
+D+IIIGAGSAG VLA RL+E K VLLLEAG + F +P LA + +W
Sbjct: 6 YDYIIIGAGSAGNVLAARLTEDKDTTVLLLEAGGPDYRLDFRTQMPAALAYPLQGRRYNW 65
Query: 174 NYMTMPEPHACKARPNGRCYWARGKVMGGSSTINYMIYARGNAEDYDEWEAM-GNEGWGY 232
Y+T PEPH N R RGK +GGSS IN M Y RGNA D ++W G E W Y
Sbjct: 66 AYLTDPEPHMN----NRRMECGRGKGLGGSSLINGMCYIRGNAMDLEQWATHKGLENWTY 121
Query: 233 DEVLEYFKKSEDNEDKEIYHKNPEYHGKGGYQTVEWLPYADKNL--PVLIKAWKEKGYPE 290
+ L Y+KK+E + +YHG G +V P N+ +++A + GYP
Sbjct: 122 ADCLPYYKKAETRDI-----GGNDYHGDSGPVSVA-TPKNGNNVLFHAMVEAGVQAGYPR 175
Query: 291 R-DLNAENQIGVMHL-QTTTRHGERLSTNGAFIRPIRKKRKNLTILTEAHVTRIICDKTP 348
DLN Q G + +T T G R ST ++ + K R NLTILT A +I+
Sbjct: 176 TDDLNGYQQEGFGPMDRTVTPKGRRSSTARGYL-DMAKGRPNLTILTHATTNKILF---- 230
Query: 349 NKHKKLVAKSVEFFYKKKLRRARAKKEVISSAGAINSPKILMLSGIGPKDHLTSLNIKTL 408
N+ + + + + + L+RA K+EV+ AGAI SP+IL SG+G L S++I +
Sbjct: 231 NQKQAIGVEYIIGADQNNLQRALVKREVLLCAGAIASPQILQRSGVGQSTFLKSMDIDVV 290
Query: 409 VDL-KVGHNLQDHL------TSDGIVIAFPKTATDRMYKKKVSDAFEYKESRCGPLASTG 461
DL VG NLQDHL V +P + Y + A E+ + G + ++
Sbjct: 291 HDLPGVGENLQDHLEMYLQYKCKQPVSLYPAL---KWYNQPAIGA-EWLFNGTG-IGASN 345
Query: 462 PLQCGVFAKTKLADSLDVPDIQFHHDPMSVRDWITNPVNASSTNMSPFAYYDGITVRPIL 521
+ G F ++ +D P+IQ+H P+++ +N V G
Sbjct: 346 QFEAGGFIRS--SDEFKWPNIQYHFLPVAINYNGSNAVKEH-----------GFQAHVGS 392
Query: 522 LKPKSRGYIQLNATDPLWGPPLIFPKFFTKK 552
++ SRG I+L + DP P ++F T++
Sbjct: 393 MRSPSRGRIKLKSKDPFAHPSILFNYMSTEQ 423
>sp|B7GYG5|BETA_ACIB3 Choline dehydrogenase OS=Acinetobacter baumannii (strain
AB307-0294) GN=betA PE=3 SV=1
Length = 552
Score = 180 bits (456), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 153/451 (33%), Positives = 222/451 (49%), Gaps = 49/451 (10%)
Query: 118 FDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIEE---PFFADVP-GLAPLISRSNIDW 173
+D+IIIGAGSAG VLA RL+E K VLLLEAG + F +P LA + +W
Sbjct: 6 YDYIIIGAGSAGNVLAARLTEDKDTTVLLLEAGGPDYRLDFRTQMPAALAYPLQGRRYNW 65
Query: 174 NYMTMPEPHACKARPNGRCYWARGKVMGGSSTINYMIYARGNAEDYDEWEAM-GNEGWGY 232
Y+T PEPH N R RGK +GGSS IN M Y RGNA D ++W G E W Y
Sbjct: 66 AYLTDPEPHMN----NRRMECGRGKGLGGSSLINGMCYIRGNAMDLEQWATHKGLENWTY 121
Query: 233 DEVLEYFKKSEDNEDKEIYHKNPEYHGKGGYQTVEWLPYADKNL--PVLIKAWKEKGYPE 290
+ L Y+KK+E + +YHG G +V P N+ +++A + GYP
Sbjct: 122 ADCLPYYKKAETRDI-----GGNDYHGDSGPVSVA-TPKNGNNVLFHAMVEAGVQAGYPR 175
Query: 291 R-DLNAENQIGVMHL-QTTTRHGERLSTNGAFIRPIRKKRKNLTILTEAHVTRIICDKTP 348
DLN Q G + +T T G R ST ++ + K R NLTILT A +I+
Sbjct: 176 TDDLNGYQQEGFGPMDRTVTPKGRRSSTARGYL-DMAKGRPNLTILTHATTNKILF---- 230
Query: 349 NKHKKLVAKSVEFFYKKKLRRARAKKEVISSAGAINSPKILMLSGIGPKDHLTSLNIKTL 408
N+ + + + + + L+RA K+EV+ AGAI SP+IL SG+G L S++I +
Sbjct: 231 NQKQAIGVEYIIGADQNNLQRALVKREVLLCAGAIASPQILQRSGVGQSTFLKSMDIDVV 290
Query: 409 VDL-KVGHNLQDHL------TSDGIVIAFPKTATDRMYKKKVSDAFEYKESRCGPLASTG 461
DL VG NLQDHL V +P + Y + A E+ + G + ++
Sbjct: 291 HDLPGVGENLQDHLEMYLQYKCKQPVSLYPAL---KWYNQPAIGA-EWLFNGTG-IGASN 345
Query: 462 PLQCGVFAKTKLADSLDVPDIQFHHDPMSVRDWITNPVNASSTNMSPFAYYDGITVRPIL 521
+ G F ++ +D P+IQ+H P+++ +N V G
Sbjct: 346 QFEAGGFIRS--SDEFKWPNIQYHFLPVAINYNGSNAVKEH-----------GFQAHVGS 392
Query: 522 LKPKSRGYIQLNATDPLWGPPLIFPKFFTKK 552
++ SRG I+L + DP P ++F T++
Sbjct: 393 MRSPSRGRIKLKSKDPFAHPSILFNYMSTEQ 423
>sp|A5WA97|BETA_PSEP1 Choline dehydrogenase OS=Pseudomonas putida (strain F1 / ATCC
700007) GN=betA PE=3 SV=1
Length = 565
Score = 179 bits (455), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 156/451 (34%), Positives = 225/451 (49%), Gaps = 50/451 (11%)
Query: 118 FDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIEE---PFFADVPG-LAPLISRSNIDW 173
FD+II+GAGSAG LA RL+E VLLLEAG + F +P LA + +W
Sbjct: 5 FDYIIVGAGSAGNTLATRLTEDAGVTVLLLEAGGPDYRFDFRTQMPAALAFPLQGRRYNW 64
Query: 174 NYMTMPEPHACKARPNGRCYWARGKVMGGSSTINYMIYARGNAEDYDEW-EAMGNEGWGY 232
Y T PEP+ R C RGK +GGSS IN M Y RGNA D+D W E G E W Y
Sbjct: 65 AYETDPEPYMDGRRME--C--GRGKGLGGSSLINGMCYIRGNAMDFDGWAELPGLEDWTY 120
Query: 233 DEVLEYFKKSEDNEDKEIYHKNP-EYHGKGGYQTVEWLPYADKN--LPVLIKAWKEKGYP 289
+ L YF+K+E + P +YHG G +V P A N +++A + GYP
Sbjct: 121 LDCLPYFRKAETRD------IGPNDYHGGDGPVSVA-TPKAGNNPLFHAMVEAGVQAGYP 173
Query: 290 E-RDLNAENQIGVMHL-QTTTRHGERLSTNGAFIRPIRKKRKNLTILTEAHVTRIICDKT 347
DLN Q G + ++ T++G R ST ++ KKR NLTI+T A R++ D
Sbjct: 174 RTEDLNGYQQEGFGPMDRSVTKNGRRSSTARGYLDQA-KKRPNLTIVTHALTDRVLFDG- 231
Query: 348 PNKHKKLVAKSVEFFYKKKLRRARAKKEVISSAGAINSPKILMLSGIGPKDHLTSLNIKT 407
K+ V + ++ ARA+KEVI S+GAI SP++L SG+GP+ L SL+I
Sbjct: 232 ----KRAVGVTYLVGDSEERVEARARKEVIVSSGAIASPQLLQRSGVGPRALLESLDIPV 287
Query: 408 LVDL-KVGHNLQDHLTSDGIVIAFPKTATDRMYKKKV-----SDAFEYKESRCGPLASTG 461
+ DL VG NLQDHL + + + T +Y + + E+ + G + ++
Sbjct: 288 VHDLPGVGENLQDHLE---LYLQYACTQPVSLYPSLLWWNQPAIGAEWLFNGTG-IGASN 343
Query: 462 PLQCGVFAKTKLADSLDVPDIQFHHDPMSVRDWITNPVNASSTNMSPFAYYDGITVRPIL 521
+ G F +T+ P+IQ+H P+++ +N V F + G P
Sbjct: 344 QFEAGGFIRTR--PEFKWPNIQYHFLPVAINYNGSNGVKEHG-----FQAHMGSMRSP-- 394
Query: 522 LKPKSRGYIQLNATDPLWGPPLIFPKFFTKK 552
+RG IQ + DP P ++F T++
Sbjct: 395 ----ARGRIQAKSKDPRQHPSILFNYMSTEQ 421
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.135 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 231,539,250
Number of Sequences: 539616
Number of extensions: 10516824
Number of successful extensions: 30884
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 34
Number of HSP's that attempted gapping in prelim test: 29767
Number of HSP's gapped (non-prelim): 334
length of query: 567
length of database: 191,569,459
effective HSP length: 123
effective length of query: 444
effective length of database: 125,196,691
effective search space: 55587330804
effective search space used: 55587330804
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 64 (29.3 bits)