Query psy1042
Match_columns 567
No_of_seqs 372 out of 2520
Neff 8.3
Searched_HMMs 46136
Date Fri Aug 16 17:26:03 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1042.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/1042hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1238|consensus 100.0 2.9E-77 6.3E-82 631.0 35.0 445 113-567 53-507 (623)
2 PRK02106 choline dehydrogenase 100.0 2.5E-61 5.5E-66 532.6 41.2 420 115-567 3-434 (560)
3 TIGR01810 betA choline dehydro 100.0 4E-61 8.6E-66 528.3 40.9 416 119-567 1-427 (532)
4 COG2303 BetA Choline dehydroge 100.0 8.4E-54 1.8E-58 467.1 31.2 421 114-567 4-435 (542)
5 PLN02785 Protein HOTHEAD 100.0 4.4E-51 9.6E-56 448.2 34.7 400 114-567 52-467 (587)
6 PF00732 GMC_oxred_N: GMC oxid 100.0 6.8E-51 1.5E-55 415.4 17.1 288 118-421 1-295 (296)
7 TIGR02462 pyranose_ox pyranose 100.0 6.3E-28 1.4E-32 260.5 29.0 273 118-433 1-326 (544)
8 PRK07121 hypothetical protein; 99.6 1.2E-13 2.7E-18 150.8 21.3 64 320-390 182-245 (492)
9 PRK12835 3-ketosteroid-delta-1 99.6 4.3E-14 9.3E-19 156.7 17.2 64 319-389 217-280 (584)
10 PRK12845 3-ketosteroid-delta-1 99.6 6.3E-14 1.4E-18 154.5 17.8 61 321-389 223-283 (564)
11 PRK12837 3-ketosteroid-delta-1 99.5 1.3E-13 2.8E-18 151.1 17.5 61 320-388 179-239 (513)
12 PRK12844 3-ketosteroid-delta-1 99.5 1.2E-13 2.5E-18 152.7 16.6 63 320-390 213-275 (557)
13 PF00890 FAD_binding_2: FAD bi 99.5 3.8E-13 8.3E-18 144.0 18.4 59 321-389 147-207 (417)
14 PRK08274 tricarballylate dehyd 99.5 9.9E-13 2.2E-17 142.8 19.9 66 321-395 137-203 (466)
15 PRK06481 fumarate reductase fl 99.5 1.8E-12 3.8E-17 141.9 21.3 58 321-387 196-254 (506)
16 PTZ00306 NADH-dependent fumara 99.4 1.5E-12 3.2E-17 154.8 16.7 58 329-387 560-623 (1167)
17 PRK12834 putative FAD-binding 99.4 5.2E-12 1.1E-16 139.7 19.3 35 116-151 3-37 (549)
18 PRK06175 L-aspartate oxidase; 99.4 5.3E-12 1.1E-16 135.5 18.1 57 320-385 134-190 (433)
19 PLN00128 Succinate dehydrogena 99.4 7.1E-12 1.5E-16 140.0 19.8 52 328-386 199-252 (635)
20 PRK07843 3-ketosteroid-delta-1 99.4 5.7E-12 1.2E-16 139.4 18.8 64 320-391 213-276 (557)
21 PLN02815 L-aspartate oxidase 99.4 4.8E-12 1E-16 140.1 17.4 54 328-385 168-223 (594)
22 PRK07395 L-aspartate oxidase; 99.4 5.1E-12 1.1E-16 139.2 17.4 52 328-385 147-198 (553)
23 PRK06452 sdhA succinate dehydr 99.4 7E-12 1.5E-16 138.9 18.5 55 321-384 142-198 (566)
24 PRK08958 sdhA succinate dehydr 99.4 8.1E-12 1.8E-16 138.8 18.2 57 321-385 149-207 (588)
25 PRK07573 sdhA succinate dehydr 99.4 1.1E-11 2.3E-16 139.0 19.0 53 324-385 179-233 (640)
26 PF01266 DAO: FAD dependent ox 99.4 3.3E-12 7.1E-17 132.9 13.8 61 321-395 153-213 (358)
27 PTZ00139 Succinate dehydrogena 99.4 6.2E-12 1.3E-16 140.3 15.9 58 320-385 171-230 (617)
28 TIGR01813 flavo_cyto_c flavocy 99.4 2.2E-11 4.7E-16 131.3 19.4 61 320-388 135-196 (439)
29 PRK12843 putative FAD-binding 99.4 3.4E-11 7.4E-16 133.8 21.3 62 321-390 227-288 (578)
30 PRK07804 L-aspartate oxidase; 99.4 2.7E-11 5.8E-16 133.6 20.0 38 114-152 13-50 (541)
31 PRK12842 putative succinate de 99.4 1.6E-11 3.5E-16 136.4 18.5 62 321-390 220-281 (574)
32 PRK06263 sdhA succinate dehydr 99.4 2.7E-11 5.9E-16 133.8 19.4 57 321-385 140-198 (543)
33 PLN02661 Putative thiazole syn 99.4 2.1E-11 4.5E-16 124.6 16.7 71 80-151 56-126 (357)
34 PRK06134 putative FAD-binding 99.4 2E-11 4.2E-16 135.8 18.1 61 321-389 223-283 (581)
35 PRK11101 glpA sn-glycerol-3-ph 99.4 3.7E-11 8E-16 132.6 19.9 58 328-394 161-220 (546)
36 PRK12839 hypothetical protein; 99.3 1.7E-11 3.7E-16 135.7 16.8 55 328-388 226-280 (572)
37 PRK09078 sdhA succinate dehydr 99.3 3.7E-11 7.9E-16 133.9 19.3 57 321-385 155-213 (598)
38 PRK08641 sdhA succinate dehydr 99.3 5.6E-11 1.2E-15 132.2 19.7 49 330-385 151-201 (589)
39 PRK05945 sdhA succinate dehydr 99.3 2.9E-11 6.3E-16 134.4 17.2 56 321-385 141-198 (575)
40 PTZ00383 malate:quinone oxidor 99.3 1.3E-10 2.8E-15 126.0 20.8 53 331-396 232-284 (497)
41 PRK07057 sdhA succinate dehydr 99.3 9.3E-11 2E-15 130.5 19.4 51 328-385 160-212 (591)
42 PRK06854 adenylylsulfate reduc 99.3 8.2E-11 1.8E-15 131.3 18.8 48 329-384 146-195 (608)
43 PRK08626 fumarate reductase fl 99.3 8.6E-11 1.9E-15 131.9 18.4 56 321-385 164-221 (657)
44 PRK08275 putative oxidoreducta 99.3 1.1E-10 2.4E-15 129.3 18.9 58 319-384 141-200 (554)
45 PRK09231 fumarate reductase fl 99.3 8E-11 1.7E-15 130.8 17.6 50 328-385 146-197 (582)
46 PRK07803 sdhA succinate dehydr 99.3 1E-10 2.2E-15 131.0 18.3 47 331-385 166-214 (626)
47 TIGR01812 sdhA_frdA_Gneg succi 99.3 1E-10 2.2E-15 130.1 17.5 56 321-385 135-192 (566)
48 PRK09077 L-aspartate oxidase; 99.3 1.6E-10 3.4E-15 127.5 18.8 52 328-385 151-208 (536)
49 TIGR00551 nadB L-aspartate oxi 99.2 2.1E-10 4.7E-15 125.1 18.5 58 320-385 133-190 (488)
50 TIGR01176 fum_red_Fp fumarate 99.2 2E-10 4.3E-15 127.5 18.4 50 328-385 145-196 (580)
51 PRK06069 sdhA succinate dehydr 99.2 2E-10 4.4E-15 127.8 18.3 49 328-384 150-200 (577)
52 TIGR01811 sdhA_Bsu succinate d 99.2 1.7E-10 3.6E-15 128.6 17.1 50 329-385 146-197 (603)
53 PRK08205 sdhA succinate dehydr 99.2 2.9E-10 6.3E-15 126.6 18.8 59 320-385 145-207 (583)
54 COG2081 Predicted flavoprotein 99.2 5.5E-11 1.2E-15 121.0 11.3 111 277-412 82-193 (408)
55 TIGR01373 soxB sarcosine oxida 99.2 1.6E-10 3.4E-15 123.4 14.9 55 328-394 195-249 (407)
56 PRK12409 D-amino acid dehydrog 99.2 6.8E-10 1.5E-14 118.6 19.5 34 118-152 2-35 (410)
57 PRK08071 L-aspartate oxidase; 99.2 2.8E-10 6.1E-15 124.6 16.8 49 329-385 142-191 (510)
58 PRK07512 L-aspartate oxidase; 99.2 3.1E-10 6.6E-15 124.4 16.6 50 328-385 149-198 (513)
59 PRK13800 putative oxidoreducta 99.2 5.5E-10 1.2E-14 130.1 19.6 49 329-385 156-206 (897)
60 PF03486 HI0933_like: HI0933-l 99.2 4.2E-11 9.2E-16 126.6 9.3 118 277-418 80-200 (409)
61 TIGR03329 Phn_aa_oxid putative 99.2 1.7E-10 3.7E-15 125.1 13.9 38 115-152 22-60 (460)
62 TIGR02061 aprA adenosine phosp 99.2 6.9E-10 1.5E-14 123.2 18.5 58 321-385 132-192 (614)
63 TIGR01377 soxA_mon sarcosine o 99.2 1.1E-09 2.4E-14 115.7 18.3 34 118-152 1-34 (380)
64 PRK00711 D-amino acid dehydrog 99.2 8.2E-10 1.8E-14 118.1 17.0 33 119-152 2-34 (416)
65 TIGR00292 thiazole biosynthesi 99.2 4.6E-10 1E-14 111.5 13.8 36 116-152 20-55 (254)
66 PRK04176 ribulose-1,5-biphosph 99.1 6.1E-10 1.3E-14 111.0 13.8 35 116-151 24-58 (257)
67 PRK11728 hydroxyglutarate oxid 99.1 1.2E-09 2.7E-14 116.0 16.7 36 117-152 2-38 (393)
68 COG0579 Predicted dehydrogenas 99.1 1.1E-09 2.3E-14 115.1 15.4 206 116-397 2-223 (429)
69 PF01946 Thi4: Thi4 family; PD 99.1 1.3E-09 2.9E-14 102.6 14.1 35 116-151 16-50 (230)
70 TIGR01320 mal_quin_oxido malat 99.1 1.8E-09 3.9E-14 117.2 16.5 35 118-152 1-36 (483)
71 COG1053 SdhA Succinate dehydro 99.1 1.1E-09 2.4E-14 120.0 14.7 101 277-384 95-202 (562)
72 TIGR02485 CobZ_N-term precorri 99.1 1.2E-09 2.7E-14 117.4 13.5 62 320-390 128-189 (432)
73 PRK08401 L-aspartate oxidase; 99.1 3.2E-09 7E-14 115.2 16.9 33 118-151 2-34 (466)
74 COG1635 THI4 Ribulose 1,5-bisp 99.1 1.6E-09 3.5E-14 101.4 11.9 34 116-150 29-62 (262)
75 TIGR03364 HpnW_proposed FAD de 99.0 3.5E-09 7.6E-14 111.3 15.8 34 118-152 1-34 (365)
76 PRK05257 malate:quinone oxidor 99.0 1.4E-08 2.9E-13 110.6 20.4 37 116-152 4-41 (494)
77 PLN02464 glycerol-3-phosphate 99.0 8.8E-09 1.9E-13 115.3 18.2 59 328-393 244-304 (627)
78 PRK13339 malate:quinone oxidor 99.0 2.4E-08 5.1E-13 108.1 20.7 35 116-150 5-40 (497)
79 COG0578 GlpA Glycerol-3-phosph 99.0 1.4E-08 3.1E-13 108.9 18.4 74 328-411 176-254 (532)
80 PRK11259 solA N-methyltryptoph 99.0 1.7E-08 3.7E-13 106.4 17.9 35 117-152 3-37 (376)
81 COG0029 NadB Aspartate oxidase 99.0 3.8E-09 8.2E-14 110.2 11.3 100 277-384 90-196 (518)
82 PRK10157 putative oxidoreducta 99.0 1.1E-08 2.3E-13 109.9 15.4 36 116-152 4-39 (428)
83 PF12831 FAD_oxidored: FAD dep 98.9 7E-10 1.5E-14 119.0 5.1 63 320-394 95-157 (428)
84 PRK13369 glycerol-3-phosphate 98.9 3.4E-08 7.4E-13 108.3 17.6 38 114-152 3-40 (502)
85 PRK12266 glpD glycerol-3-phosp 98.9 7.1E-08 1.5E-12 105.8 20.0 38 115-153 4-41 (508)
86 PRK05192 tRNA uridine 5-carbox 98.9 2.3E-08 4.9E-13 109.5 14.8 35 116-151 3-37 (618)
87 PRK13977 myosin-cross-reactive 98.9 4.9E-08 1.1E-12 105.8 16.1 72 317-399 228-303 (576)
88 PRK10015 oxidoreductase; Provi 98.9 2.8E-08 6E-13 106.7 14.0 36 116-152 4-39 (429)
89 KOG2820|consensus 98.8 3.9E-08 8.5E-13 97.6 12.9 65 320-395 158-223 (399)
90 COG3573 Predicted oxidoreducta 98.8 3.9E-08 8.5E-13 97.2 11.8 36 116-152 4-39 (552)
91 PTZ00363 rab-GDP dissociation 98.8 8.7E-08 1.9E-12 102.6 15.3 41 114-155 1-41 (443)
92 COG0644 FixC Dehydrogenases (f 98.8 3.8E-08 8.2E-13 104.7 12.5 37 116-153 2-38 (396)
93 PRK01747 mnmC bifunctional tRN 98.8 3.1E-08 6.7E-13 112.3 11.9 34 117-151 260-293 (662)
94 KOG0042|consensus 98.8 5.5E-09 1.2E-13 109.1 4.4 82 297-390 209-292 (680)
95 KOG2415|consensus 98.7 6.5E-08 1.4E-12 98.2 10.5 84 314-405 182-279 (621)
96 PF01134 GIDA: Glucose inhibit 98.7 7.2E-08 1.6E-12 100.3 10.6 54 320-385 100-153 (392)
97 PRK06185 hypothetical protein; 98.7 4.2E-07 9E-12 97.0 16.8 36 115-151 4-39 (407)
98 COG0665 DadA Glycine/D-amino a 98.7 2.9E-07 6.3E-12 97.3 15.2 37 116-153 3-39 (387)
99 PRK07364 2-octaprenyl-6-methox 98.7 8.4E-07 1.8E-11 94.9 18.8 38 114-152 15-52 (415)
100 PF06039 Mqo: Malate:quinone o 98.7 4E-07 8.7E-12 95.0 14.8 67 320-396 187-255 (488)
101 COG3380 Predicted NAD/FAD-depe 98.7 2.6E-07 5.7E-12 89.3 12.3 34 119-153 3-36 (331)
102 COG1233 Phytoene dehydrogenase 98.6 2.2E-07 4.7E-12 101.4 10.8 39 116-155 2-40 (487)
103 TIGR00275 flavoprotein, HI0933 98.6 5E-07 1.1E-11 96.2 13.2 31 121-152 1-31 (400)
104 KOG2404|consensus 98.6 2.4E-07 5.2E-12 91.3 9.6 48 330-385 159-207 (477)
105 KOG2844|consensus 98.6 8.4E-07 1.8E-11 95.1 13.5 60 321-394 193-252 (856)
106 PRK07208 hypothetical protein; 98.5 3.4E-06 7.3E-11 92.1 18.2 39 116-155 3-41 (479)
107 PLN02172 flavin-containing mon 98.5 1.3E-06 2.8E-11 94.4 14.5 38 116-154 9-46 (461)
108 PLN02985 squalene monooxygenas 98.5 3.1E-06 6.8E-11 92.8 17.2 37 114-151 40-76 (514)
109 PF13738 Pyr_redox_3: Pyridine 98.5 5.2E-07 1.1E-11 86.4 9.9 63 318-393 85-147 (203)
110 KOG1298|consensus 98.5 5.9E-07 1.3E-11 90.7 10.0 37 113-150 41-77 (509)
111 PF01494 FAD_binding_3: FAD bi 98.5 4.6E-07 1E-11 94.0 9.7 35 117-152 1-35 (356)
112 PRK06126 hypothetical protein; 98.5 6E-06 1.3E-10 91.7 18.2 36 115-151 5-40 (545)
113 PRK08244 hypothetical protein; 98.5 4.3E-06 9.4E-11 91.6 16.8 35 117-152 2-36 (493)
114 PRK05329 anaerobic glycerol-3- 98.4 4E-06 8.7E-11 89.2 15.6 59 320-388 264-322 (422)
115 KOG2960|consensus 98.4 2E-07 4.3E-12 86.7 4.3 79 70-150 31-110 (328)
116 TIGR00136 gidA glucose-inhibit 98.4 2.2E-06 4.7E-11 94.0 13.1 33 118-151 1-33 (617)
117 PRK08243 4-hydroxybenzoate 3-m 98.4 3.5E-06 7.7E-11 89.5 14.6 34 117-151 2-35 (392)
118 TIGR02028 ChlP geranylgeranyl 98.4 3.4E-06 7.3E-11 89.8 14.4 32 118-150 1-32 (398)
119 PRK07045 putative monooxygenas 98.4 2.2E-06 4.8E-11 90.9 12.8 36 116-152 4-39 (388)
120 COG0654 UbiH 2-polyprenyl-6-me 98.4 4.5E-06 9.8E-11 88.5 14.5 33 117-150 2-34 (387)
121 PRK05675 sdhA succinate dehydr 98.4 2.1E-06 4.7E-11 95.4 12.2 58 320-385 131-190 (570)
122 PRK06184 hypothetical protein; 98.4 8.6E-06 1.9E-10 89.5 16.5 35 117-152 3-37 (502)
123 PRK11445 putative oxidoreducta 98.4 1.1E-05 2.3E-10 84.5 16.1 33 118-152 2-34 (351)
124 TIGR03378 glycerol3P_GlpB glyc 98.4 6.4E-06 1.4E-10 86.8 14.3 62 321-392 269-330 (419)
125 PRK06847 hypothetical protein; 98.3 3.8E-06 8.3E-11 88.5 12.5 35 116-151 3-37 (375)
126 PRK06183 mhpA 3-(3-hydroxyphen 98.3 1.1E-05 2.3E-10 89.6 16.3 36 116-152 9-44 (538)
127 PRK07333 2-octaprenyl-6-methox 98.3 1.4E-05 3E-10 85.1 16.5 36 117-152 1-37 (403)
128 TIGR02360 pbenz_hydroxyl 4-hyd 98.3 1.1E-05 2.4E-10 85.7 14.2 34 117-151 2-35 (390)
129 KOG2853|consensus 98.3 5.6E-05 1.2E-09 75.5 17.4 41 112-152 81-124 (509)
130 PRK06617 2-octaprenyl-6-methox 98.2 2.4E-05 5.3E-10 82.5 15.8 33 118-151 2-34 (374)
131 COG2509 Uncharacterized FAD-de 98.2 3.3E-05 7.1E-10 80.3 15.9 80 321-412 179-259 (486)
132 KOG2665|consensus 98.2 1.4E-05 2.9E-10 79.0 12.4 214 114-396 45-268 (453)
133 COG0445 GidA Flavin-dependent 98.2 3.1E-06 6.6E-11 89.6 8.2 34 116-150 3-36 (621)
134 PRK06834 hypothetical protein; 98.2 2.2E-05 4.8E-10 85.7 15.3 34 117-151 3-36 (488)
135 PRK07588 hypothetical protein; 98.2 2.6E-05 5.6E-10 82.8 15.5 32 119-151 2-33 (391)
136 PRK08132 FAD-dependent oxidore 98.2 4.1E-05 8.9E-10 85.1 17.2 36 115-151 21-56 (547)
137 PF13450 NAD_binding_8: NAD(P) 98.2 2.1E-06 4.6E-11 67.0 4.7 32 122-154 1-32 (68)
138 PRK07538 hypothetical protein; 98.2 2.4E-05 5.1E-10 83.8 14.3 32 119-151 2-33 (413)
139 PF00743 FMO-like: Flavin-bind 98.2 8.1E-06 1.8E-10 89.6 10.4 36 119-155 3-38 (531)
140 KOG4254|consensus 98.2 7.2E-06 1.6E-10 84.6 9.0 59 320-390 269-327 (561)
141 COG2072 TrkA Predicted flavopr 98.2 3.1E-05 6.8E-10 83.4 14.5 38 115-153 6-44 (443)
142 PLN00093 geranylgeranyl diphos 98.1 5E-06 1.1E-10 89.7 6.8 35 115-150 37-71 (450)
143 TIGR03377 glycerol3P_GlpA glyc 98.1 6.6E-05 1.4E-09 82.8 15.4 58 328-394 140-199 (516)
144 TIGR01816 sdhA_forward succina 98.1 5.3E-05 1.1E-09 84.3 14.3 58 319-385 123-182 (565)
145 TIGR01372 soxA sarcosine oxida 98.0 0.00011 2.4E-09 86.9 17.4 62 324-395 360-422 (985)
146 TIGR02023 BchP-ChlP geranylger 98.0 4.2E-06 9.1E-11 88.8 4.6 32 118-150 1-32 (388)
147 TIGR02032 GG-red-SF geranylger 98.0 5.4E-06 1.2E-10 83.9 5.0 34 118-152 1-34 (295)
148 PLN02463 lycopene beta cyclase 98.0 8.8E-06 1.9E-10 87.6 6.5 36 115-151 26-61 (447)
149 PRK06116 glutathione reductase 98.0 7.2E-06 1.6E-10 88.8 5.1 34 116-150 3-36 (450)
150 PRK06475 salicylate hydroxylas 97.9 0.00013 2.9E-09 77.7 13.9 32 119-151 4-35 (400)
151 TIGR02730 carot_isom carotene 97.9 9.9E-06 2.2E-10 88.8 5.1 58 321-390 235-292 (493)
152 PRK08773 2-octaprenyl-3-methyl 97.9 1.1E-05 2.4E-10 85.7 5.2 37 115-152 4-40 (392)
153 PRK08020 ubiF 2-octaprenyl-3-m 97.9 1E-05 2.2E-10 85.9 4.9 35 116-151 4-38 (391)
154 PRK07608 ubiquinone biosynthes 97.9 1.1E-05 2.4E-10 85.4 5.0 36 116-152 4-39 (388)
155 PRK05976 dihydrolipoamide dehy 97.9 1.1E-05 2.4E-10 87.9 5.1 36 115-151 2-37 (472)
156 TIGR01421 gluta_reduc_1 glutat 97.9 1E-05 2.2E-10 87.6 4.6 34 117-151 2-35 (450)
157 KOG1399|consensus 97.9 9E-05 2E-09 79.2 11.5 37 117-154 6-42 (448)
158 PRK08010 pyridine nucleotide-d 97.9 1.2E-05 2.7E-10 86.7 4.8 35 117-152 3-37 (441)
159 PRK06370 mercuric reductase; V 97.9 1.4E-05 3E-10 86.9 5.2 35 116-151 4-38 (463)
160 PRK09126 hypothetical protein; 97.9 1.3E-05 2.8E-10 85.1 4.7 35 117-152 3-37 (392)
161 PRK07494 2-octaprenyl-6-methox 97.9 1.6E-05 3.4E-10 84.3 5.2 35 116-151 6-40 (388)
162 PRK12779 putative bifunctional 97.9 8.2E-05 1.8E-09 87.0 11.5 38 117-155 306-343 (944)
163 TIGR02352 thiamin_ThiO glycine 97.9 0.00015 3.2E-09 75.1 12.4 49 328-389 149-197 (337)
164 COG0562 Glf UDP-galactopyranos 97.8 1.9E-05 4.1E-10 78.5 5.2 39 117-156 1-39 (374)
165 KOG2852|consensus 97.8 2.4E-05 5.1E-10 76.5 5.7 64 320-394 153-217 (380)
166 PRK05714 2-octaprenyl-3-methyl 97.8 1.4E-05 3E-10 85.3 4.6 34 117-151 2-35 (405)
167 TIGR01424 gluta_reduc_2 glutat 97.8 1.4E-05 3.1E-10 86.3 4.6 33 117-150 2-34 (446)
168 PRK08013 oxidoreductase; Provi 97.8 1.6E-05 3.6E-10 84.7 4.9 35 117-152 3-37 (400)
169 PLN02697 lycopene epsilon cycl 97.8 2.5E-05 5.3E-10 85.6 6.3 35 115-150 106-140 (529)
170 TIGR00031 UDP-GALP_mutase UDP- 97.8 1.9E-05 4.2E-10 82.8 5.3 37 118-155 2-38 (377)
171 TIGR01316 gltA glutamate synth 97.8 0.00074 1.6E-08 73.1 17.6 37 116-153 132-168 (449)
172 PRK06416 dihydrolipoamide dehy 97.8 1.8E-05 3.9E-10 86.0 5.0 35 116-151 3-37 (462)
173 PRK07251 pyridine nucleotide-d 97.8 1.9E-05 4.1E-10 85.3 5.0 35 117-152 3-37 (438)
174 PF04820 Trp_halogenase: Trypt 97.8 0.00011 2.4E-09 79.5 10.9 34 119-153 1-37 (454)
175 PRK05249 soluble pyridine nucl 97.8 2.2E-05 4.7E-10 85.3 5.5 37 116-153 4-40 (461)
176 PRK06467 dihydrolipoamide dehy 97.8 2.2E-05 4.7E-10 85.6 5.4 37 116-153 3-39 (471)
177 TIGR03143 AhpF_homolog putativ 97.8 2.1E-05 4.6E-10 87.4 5.0 36 116-152 3-38 (555)
178 PTZ00058 glutathione reductase 97.8 2.2E-05 4.8E-10 86.8 4.8 35 116-151 47-81 (561)
179 PRK06115 dihydrolipoamide dehy 97.8 2.3E-05 5E-10 85.2 4.9 33 117-150 3-35 (466)
180 PRK09897 hypothetical protein; 97.8 0.00045 9.8E-09 75.8 14.8 36 118-153 2-38 (534)
181 PRK08849 2-octaprenyl-3-methyl 97.8 2.4E-05 5.2E-10 82.9 4.8 34 117-151 3-36 (384)
182 PRK07818 dihydrolipoamide dehy 97.8 2.5E-05 5.5E-10 85.0 5.1 34 117-151 4-37 (466)
183 COG0492 TrxB Thioredoxin reduc 97.8 2.5E-05 5.5E-10 79.5 4.6 64 320-394 184-248 (305)
184 KOG2311|consensus 97.8 6.3E-05 1.4E-09 78.2 7.4 35 115-150 26-60 (679)
185 TIGR01350 lipoamide_DH dihydro 97.7 2.8E-05 6.1E-10 84.5 5.2 32 117-149 1-32 (461)
186 TIGR01988 Ubi-OHases Ubiquinon 97.7 2.5E-05 5.5E-10 82.4 4.7 33 119-152 1-33 (385)
187 KOG0029|consensus 97.7 3.1E-05 6.6E-10 84.2 5.1 39 116-155 14-52 (501)
188 TIGR01292 TRX_reduct thioredox 97.7 2.9E-05 6.2E-10 78.9 4.6 55 329-392 190-246 (300)
189 TIGR02733 desat_CrtD C-3',4' d 97.7 3.1E-05 6.8E-10 84.8 5.2 36 118-154 2-37 (492)
190 PRK06327 dihydrolipoamide dehy 97.7 2.9E-05 6.3E-10 84.7 4.9 33 116-149 3-35 (475)
191 COG1249 Lpd Pyruvate/2-oxoglut 97.7 3.2E-05 6.9E-10 82.9 5.0 36 116-152 3-38 (454)
192 PRK14694 putative mercuric red 97.7 3.3E-05 7.2E-10 84.1 5.2 36 115-151 4-39 (468)
193 TIGR02053 MerA mercuric reduct 97.7 3.1E-05 6.7E-10 84.2 4.8 33 118-151 1-33 (463)
194 TIGR01790 carotene-cycl lycope 97.7 3.1E-05 6.7E-10 82.1 4.7 33 119-152 1-33 (388)
195 PTZ00052 thioredoxin reductase 97.7 3.5E-05 7.5E-10 84.5 4.9 34 116-150 4-37 (499)
196 TIGR01989 COQ6 Ubiquinone bios 97.7 3E-05 6.5E-10 83.7 4.3 33 118-151 1-37 (437)
197 PRK08850 2-octaprenyl-6-methox 97.7 3.7E-05 8.1E-10 82.0 4.8 33 117-150 4-36 (405)
198 PRK06292 dihydrolipoamide dehy 97.7 3.9E-05 8.4E-10 83.4 4.9 33 117-150 3-35 (460)
199 TIGR01984 UbiH 2-polyprenyl-6- 97.7 3.7E-05 7.9E-10 81.3 4.6 33 119-152 1-34 (382)
200 PF05834 Lycopene_cycl: Lycope 97.7 3.6E-05 7.7E-10 81.3 4.4 33 119-152 1-35 (374)
201 PRK07190 hypothetical protein; 97.7 4.4E-05 9.5E-10 83.4 5.1 36 116-152 4-39 (487)
202 TIGR02734 crtI_fam phytoene de 97.7 3.9E-05 8.5E-10 84.3 4.5 59 320-390 224-282 (502)
203 PTZ00367 squalene epoxidase; P 97.6 4.5E-05 9.8E-10 84.4 4.9 35 116-151 32-66 (567)
204 PRK13748 putative mercuric red 97.6 4.7E-05 1E-09 84.9 5.0 34 116-150 97-130 (561)
205 PLN02268 probable polyamine ox 97.6 5.3E-05 1.1E-09 81.7 5.2 37 119-156 2-38 (435)
206 PRK11883 protoporphyrinogen ox 97.6 5.2E-05 1.1E-09 81.9 5.0 36 119-155 2-39 (451)
207 PRK07233 hypothetical protein; 97.6 6E-05 1.3E-09 80.9 5.0 36 119-155 1-36 (434)
208 PF13434 K_oxygenase: L-lysine 97.6 0.00017 3.7E-09 74.9 8.1 36 117-152 2-37 (341)
209 PRK08163 salicylate hydroxylas 97.6 6.4E-05 1.4E-09 79.8 5.0 36 116-152 3-38 (396)
210 PLN02546 glutathione reductase 97.6 5.9E-05 1.3E-09 83.4 4.6 33 116-149 78-110 (558)
211 PLN02507 glutathione reductase 97.6 6.2E-05 1.3E-09 82.5 4.8 33 116-149 24-56 (499)
212 PLN02576 protoporphyrinogen ox 97.6 8E-05 1.7E-09 81.7 5.4 40 116-155 11-50 (496)
213 PRK07236 hypothetical protein; 97.6 7.5E-05 1.6E-09 79.2 4.8 34 117-151 6-39 (386)
214 TIGR01789 lycopene_cycl lycope 97.5 7.7E-05 1.7E-09 78.6 4.7 33 119-151 1-34 (370)
215 PRK06753 hypothetical protein; 97.5 7.9E-05 1.7E-09 78.5 4.7 33 119-152 2-34 (373)
216 PTZ00153 lipoamide dehydrogena 97.5 8.1E-05 1.8E-09 83.6 4.7 34 116-150 115-148 (659)
217 PRK05732 2-octaprenyl-6-methox 97.5 8.7E-05 1.9E-09 78.8 4.7 34 117-150 3-38 (395)
218 PRK08294 phenol 2-monooxygenas 97.5 0.00015 3.2E-09 81.8 6.7 38 114-152 29-67 (634)
219 PRK10262 thioredoxin reductase 97.5 0.00011 2.4E-09 75.8 5.1 64 321-394 191-257 (321)
220 PRK06996 hypothetical protein; 97.5 0.0001 2.2E-09 78.5 4.6 36 115-151 9-48 (398)
221 PF07992 Pyr_redox_2: Pyridine 97.5 0.00013 2.8E-09 69.5 4.8 32 119-151 1-32 (201)
222 TIGR01423 trypano_reduc trypan 97.5 0.00012 2.5E-09 80.0 4.9 35 116-150 2-36 (486)
223 COG3349 Uncharacterized conser 97.4 0.00012 2.7E-09 77.8 4.6 35 119-154 2-36 (485)
224 COG1231 Monoamine oxidase [Ami 97.4 0.00016 3.4E-09 75.7 5.2 39 115-154 5-43 (450)
225 TIGR00562 proto_IX_ox protopor 97.4 0.00014 3E-09 79.0 5.1 38 118-155 3-43 (462)
226 PRK14727 putative mercuric red 97.4 0.00015 3.2E-09 79.2 5.1 37 116-153 15-51 (479)
227 PLN02568 polyamine oxidase 97.4 0.0002 4.3E-09 79.0 5.7 39 116-155 4-47 (539)
228 PRK05335 tRNA (uracil-5-)-meth 97.4 0.00016 3.5E-09 76.3 4.6 35 118-153 3-37 (436)
229 PLN02676 polyamine oxidase 97.4 0.00019 4.1E-09 78.4 5.3 39 116-155 25-64 (487)
230 TIGR01438 TGR thioredoxin and 97.4 0.00016 3.4E-09 79.0 4.6 33 117-150 2-34 (484)
231 PRK05868 hypothetical protein; 97.3 0.00019 4.1E-09 75.7 4.7 33 119-152 3-35 (372)
232 PRK09564 coenzyme A disulfide 97.3 0.0038 8.2E-08 67.5 14.8 62 320-395 196-257 (444)
233 PLN02927 antheraxanthin epoxid 97.3 0.00025 5.4E-09 79.4 5.7 37 114-151 78-114 (668)
234 PF06100 Strep_67kDa_ant: Stre 97.3 0.0089 1.9E-07 63.8 16.8 67 324-399 216-284 (500)
235 PRK12416 protoporphyrinogen ox 97.3 0.00024 5.1E-09 77.3 4.8 37 119-155 3-44 (463)
236 PRK15317 alkyl hydroperoxide r 97.3 0.00023 5.1E-09 78.4 4.7 57 328-392 399-457 (517)
237 TIGR02731 phytoene_desat phyto 97.3 0.00028 6.1E-09 76.5 5.0 36 119-155 1-36 (453)
238 COG3075 GlpB Anaerobic glycero 97.3 0.00027 5.9E-09 70.5 4.4 58 321-388 264-321 (421)
239 COG3634 AhpF Alkyl hydroperoxi 97.3 0.0046 1E-07 62.3 12.9 66 319-392 393-460 (520)
240 TIGR03140 AhpF alkyl hydropero 97.2 0.00027 5.8E-09 77.9 4.7 56 328-391 400-457 (515)
241 COG1252 Ndh NADH dehydrogenase 97.2 0.009 2E-07 62.9 15.7 35 119-153 5-40 (405)
242 TIGR03315 Se_ygfK putative sel 97.2 0.00037 8.1E-09 81.2 5.4 38 116-154 536-573 (1012)
243 PRK13512 coenzyme A disulfide 97.2 0.003 6.5E-08 68.2 11.8 34 119-152 3-37 (438)
244 TIGR00137 gid_trmFO tRNA:m(5)U 97.1 0.00042 9.1E-09 73.6 4.6 33 119-152 2-34 (433)
245 PRK12831 putative oxidoreducta 97.1 0.00058 1.3E-08 74.2 5.4 37 116-153 139-175 (464)
246 KOG4716|consensus 97.1 0.00045 9.7E-09 69.1 4.0 34 115-149 17-50 (503)
247 COG1148 HdrA Heterodisulfide r 97.1 0.00057 1.2E-08 71.5 4.9 39 116-155 123-161 (622)
248 KOG2614|consensus 97.1 0.00053 1.2E-08 70.8 4.6 32 118-150 3-34 (420)
249 COG1232 HemY Protoporphyrinoge 97.1 0.00057 1.2E-08 72.8 4.8 35 120-155 3-39 (444)
250 PRK06912 acoL dihydrolipoamide 97.0 0.00064 1.4E-08 73.9 4.7 33 119-152 2-34 (458)
251 TIGR03197 MnmC_Cterm tRNA U-34 97.0 0.012 2.5E-07 62.3 14.2 55 321-390 141-195 (381)
252 PF00070 Pyr_redox: Pyridine n 97.0 0.0013 2.9E-08 52.9 5.2 32 120-152 2-33 (80)
253 TIGR02732 zeta_caro_desat caro 97.0 0.00078 1.7E-08 73.4 5.0 65 321-390 225-290 (474)
254 PLN02529 lysine-specific histo 97.0 0.0011 2.3E-08 75.4 6.1 38 116-154 159-196 (738)
255 TIGR03219 salicylate_mono sali 97.0 0.00075 1.6E-08 72.2 4.7 33 119-152 2-35 (414)
256 PLN02612 phytoene desaturase 97.0 0.00093 2E-08 74.4 5.5 37 117-154 93-129 (567)
257 KOG0405|consensus 96.9 0.0035 7.7E-08 63.2 8.6 35 115-150 18-52 (478)
258 PRK12810 gltD glutamate syntha 96.9 0.001 2.2E-08 72.6 5.1 37 116-153 142-178 (471)
259 PRK07846 mycothione reductase; 96.9 0.00089 1.9E-08 72.5 4.6 33 117-152 1-33 (451)
260 PLN02328 lysine-specific histo 96.9 0.0011 2.4E-08 75.6 5.2 38 116-154 237-274 (808)
261 TIGR03452 mycothione_red mycot 96.8 0.0011 2.4E-08 71.9 4.7 33 117-152 2-34 (452)
262 PF00996 GDI: GDP dissociation 96.8 0.0014 3E-08 69.9 5.1 41 114-155 1-41 (438)
263 PRK12775 putative trifunctiona 96.8 0.0013 2.8E-08 77.8 5.2 38 116-154 429-466 (1006)
264 PRK12769 putative oxidoreducta 96.8 0.0015 3.2E-08 74.3 5.4 37 117-154 327-363 (654)
265 PRK09853 putative selenate red 96.8 0.0013 2.9E-08 76.4 5.1 37 116-153 538-574 (1019)
266 KOG0685|consensus 96.8 0.0016 3.5E-08 68.4 5.0 41 116-156 20-60 (498)
267 PRK11749 dihydropyrimidine deh 96.8 0.0016 3.4E-08 70.8 5.1 37 116-153 139-175 (457)
268 PRK12778 putative bifunctional 96.8 0.0016 3.5E-08 75.1 5.5 37 116-153 430-466 (752)
269 KOG1335|consensus 96.7 0.0015 3.3E-08 66.6 4.0 37 116-153 38-74 (506)
270 PRK07845 flavoprotein disulfid 96.7 0.0017 3.7E-08 70.7 4.7 32 119-151 3-34 (466)
271 PLN02487 zeta-carotene desatur 96.7 0.0025 5.4E-08 70.6 5.9 62 324-389 304-365 (569)
272 PRK08255 salicylyl-CoA 5-hydro 96.6 0.002 4.3E-08 74.4 4.8 35 119-153 2-37 (765)
273 PLN02852 ferredoxin-NADP+ redu 96.6 0.0038 8.2E-08 67.9 6.4 38 117-154 26-64 (491)
274 PRK04965 NADH:flavorubredoxin 96.6 0.03 6.4E-07 59.2 13.2 56 328-395 195-250 (377)
275 TIGR01350 lipoamide_DH dihydro 96.6 0.023 4.9E-07 61.8 12.6 32 118-150 171-202 (461)
276 PRK09754 phenylpropionate diox 96.6 0.022 4.9E-07 60.5 12.2 31 119-150 146-176 (396)
277 TIGR02053 MerA mercuric reduct 96.5 0.02 4.3E-07 62.3 11.8 32 118-150 167-198 (463)
278 PRK06416 dihydrolipoamide dehy 96.5 0.032 6.9E-07 60.7 13.2 32 119-151 174-205 (462)
279 PRK12814 putative NADPH-depend 96.5 0.0033 7.1E-08 71.3 5.4 36 117-153 193-228 (652)
280 PLN03000 amine oxidase 96.5 0.0034 7.4E-08 71.9 5.3 39 116-155 183-221 (881)
281 PRK07818 dihydrolipoamide dehy 96.4 0.035 7.6E-07 60.4 13.0 31 119-150 174-204 (466)
282 KOG1276|consensus 96.4 0.0039 8.5E-08 64.6 5.0 40 117-156 11-51 (491)
283 TIGR01318 gltD_gamma_fam gluta 96.4 0.0043 9.2E-08 67.6 5.4 37 116-153 140-176 (467)
284 PLN02976 amine oxidase 96.4 0.0039 8.5E-08 74.1 5.3 38 116-154 692-729 (1713)
285 PRK06567 putative bifunctional 96.4 0.0042 9.1E-08 71.7 5.3 35 116-151 382-416 (1028)
286 PRK06370 mercuric reductase; V 96.3 0.04 8.7E-07 59.9 12.8 32 119-151 173-204 (463)
287 PRK12770 putative glutamate sy 96.3 0.0046 1E-07 64.7 5.0 36 118-154 19-54 (352)
288 PRK15317 alkyl hydroperoxide r 96.2 0.063 1.4E-06 59.3 13.7 32 119-151 353-384 (517)
289 PRK12809 putative oxidoreducta 96.2 0.005 1.1E-07 69.7 5.1 37 117-154 310-346 (639)
290 TIGR01317 GOGAT_sm_gam glutama 96.2 0.0052 1.1E-07 67.2 5.0 36 117-153 143-178 (485)
291 PRK05976 dihydrolipoamide dehy 96.2 0.042 9E-07 60.0 11.9 32 119-151 182-213 (472)
292 PRK06912 acoL dihydrolipoamide 96.1 0.058 1.3E-06 58.6 12.7 31 119-150 172-202 (458)
293 PTZ00188 adrenodoxin reductase 96.1 0.0065 1.4E-07 65.4 5.1 37 118-154 40-76 (506)
294 TIGR03140 AhpF alkyl hydropero 96.1 0.081 1.8E-06 58.4 13.7 31 119-150 354-384 (515)
295 PRK14989 nitrite reductase sub 96.1 0.055 1.2E-06 63.1 12.6 60 324-394 196-255 (847)
296 COG2907 Predicted NAD/FAD-bind 96.1 0.007 1.5E-07 61.2 4.5 38 117-156 8-45 (447)
297 TIGR02374 nitri_red_nirB nitri 96.0 0.049 1.1E-06 63.2 12.0 56 328-395 194-249 (785)
298 PRK12771 putative glutamate sy 96.0 0.0078 1.7E-07 67.2 5.1 37 117-154 137-173 (564)
299 KOG3855|consensus 96.0 0.0062 1.3E-07 62.9 3.7 37 116-152 35-74 (481)
300 PRK06115 dihydrolipoamide dehy 95.8 0.087 1.9E-06 57.4 12.3 31 119-150 176-206 (466)
301 PRK06327 dihydrolipoamide dehy 95.8 0.11 2.5E-06 56.6 13.1 31 119-150 185-215 (475)
302 PRK13984 putative oxidoreducta 95.8 0.012 2.6E-07 66.2 5.4 37 116-153 282-318 (604)
303 PRK10262 thioredoxin reductase 95.7 0.19 4.2E-06 51.7 13.9 31 119-150 148-178 (321)
304 TIGR03385 CoA_CoA_reduc CoA-di 95.7 0.12 2.5E-06 55.6 12.4 31 119-150 139-169 (427)
305 PRK12831 putative oxidoreducta 95.6 0.17 3.8E-06 55.0 13.7 31 119-150 283-313 (464)
306 TIGR01292 TRX_reduct thioredox 95.6 0.22 4.9E-06 50.2 13.7 32 118-150 142-173 (300)
307 PRK09754 phenylpropionate diox 95.4 0.016 3.5E-07 61.6 4.8 63 319-395 190-252 (396)
308 PRK07845 flavoprotein disulfid 95.3 0.15 3.4E-06 55.4 11.7 31 119-150 179-209 (466)
309 PTZ00058 glutathione reductase 95.1 0.15 3.3E-06 56.7 10.9 32 118-150 238-269 (561)
310 KOG2403|consensus 95.0 0.034 7.3E-07 59.5 5.3 34 115-149 53-86 (642)
311 PTZ00318 NADH dehydrogenase-li 94.8 0.029 6.3E-07 60.3 4.4 36 117-153 10-45 (424)
312 COG0493 GltD NADPH-dependent g 94.8 0.03 6.6E-07 60.3 4.4 37 118-155 124-160 (457)
313 TIGR03862 flavo_PP4765 unchara 94.6 0.12 2.7E-06 54.2 8.3 111 277-412 57-167 (376)
314 COG1206 Gid NAD(FAD)-utilizing 94.6 0.029 6.3E-07 56.4 3.3 33 119-152 5-37 (439)
315 TIGR01438 TGR thioredoxin and 94.6 0.29 6.2E-06 53.6 11.5 30 119-149 182-211 (484)
316 KOG4405|consensus 94.5 0.043 9.3E-07 56.6 4.5 41 113-154 4-44 (547)
317 PRK04965 NADH:flavorubredoxin 94.4 0.047 1E-06 57.7 4.6 35 118-152 3-38 (377)
318 KOG1439|consensus 94.3 0.026 5.7E-07 58.2 2.4 40 114-154 1-40 (440)
319 KOG2755|consensus 94.0 0.04 8.7E-07 53.7 2.9 33 120-152 2-35 (334)
320 COG5044 MRS6 RAB proteins gera 94.0 0.078 1.7E-06 54.2 5.0 38 116-154 5-42 (434)
321 KOG1800|consensus 94.0 0.069 1.5E-06 54.8 4.6 36 118-153 21-57 (468)
322 TIGR03169 Nterm_to_SelD pyridi 94.0 0.056 1.2E-06 56.7 4.2 35 119-153 1-37 (364)
323 PF13434 K_oxygenase: L-lysine 93.9 1.5 3.2E-05 45.7 14.5 37 116-152 189-226 (341)
324 PF13454 NAD_binding_9: FAD-NA 93.6 0.073 1.6E-06 48.7 3.9 32 121-152 1-36 (156)
325 PF02558 ApbA: Ketopantoate re 93.5 0.1 2.2E-06 47.3 4.4 31 120-151 1-31 (151)
326 KOG3851|consensus 93.5 0.073 1.6E-06 53.4 3.7 38 115-152 37-75 (446)
327 COG0446 HcaD Uncharacterized N 93.4 0.09 2E-06 55.6 4.7 35 118-153 137-171 (415)
328 TIGR01318 gltD_gamma_fam gluta 93.3 0.98 2.1E-05 49.2 12.6 31 119-150 284-315 (467)
329 KOG0399|consensus 93.1 0.1 2.2E-06 60.1 4.5 39 117-156 1785-1823(2142)
330 PRK12769 putative oxidoreducta 93.1 0.97 2.1E-05 51.5 12.5 31 119-150 470-501 (654)
331 KOG1336|consensus 92.7 0.83 1.8E-05 48.6 10.3 54 328-391 267-320 (478)
332 PF01210 NAD_Gly3P_dh_N: NAD-d 92.7 0.13 2.8E-06 47.1 4.0 31 120-151 2-32 (157)
333 COG0569 TrkA K+ transport syst 92.6 0.14 3E-06 50.0 4.3 33 119-152 2-34 (225)
334 KOG0404|consensus 92.4 0.13 2.7E-06 49.2 3.4 32 118-150 9-40 (322)
335 PF02737 3HCDH_N: 3-hydroxyacy 91.9 0.21 4.6E-06 46.9 4.4 31 120-151 2-32 (180)
336 PF03721 UDPG_MGDP_dh_N: UDP-g 91.5 0.22 4.8E-06 47.0 4.1 32 120-152 3-34 (185)
337 PRK12814 putative NADPH-depend 91.5 1.7 3.7E-05 49.4 12.0 31 119-150 325-356 (652)
338 PRK07251 pyridine nucleotide-d 91.4 0.24 5.2E-06 53.4 4.9 33 119-152 159-191 (438)
339 TIGR02730 carot_isom carotene 91.3 0.41 8.8E-06 52.5 6.6 36 118-154 1-36 (493)
340 PRK05708 2-dehydropantoate 2-r 90.8 0.28 6E-06 50.3 4.3 32 119-151 4-35 (305)
341 PRK07846 mycothione reductase; 90.6 0.33 7.2E-06 52.6 4.9 34 118-152 167-200 (451)
342 PRK06467 dihydrolipoamide dehy 90.5 0.32 6.9E-06 53.0 4.8 33 119-152 176-208 (471)
343 PF01593 Amino_oxidase: Flavin 90.5 0.25 5.5E-06 52.1 3.9 28 127-155 1-28 (450)
344 TIGR01421 gluta_reduc_1 glutat 90.4 0.33 7.2E-06 52.6 4.8 33 119-152 168-200 (450)
345 PF13738 Pyr_redox_3: Pyridine 90.3 0.34 7.3E-06 45.9 4.3 34 118-152 168-201 (203)
346 TIGR02374 nitri_red_nirB nitri 90.3 0.29 6.3E-06 56.9 4.5 34 120-153 1-36 (785)
347 PRK06249 2-dehydropantoate 2-r 90.2 0.37 7.9E-06 49.5 4.6 32 119-151 7-38 (313)
348 PRK14989 nitrite reductase sub 90.1 0.37 8.1E-06 56.3 5.0 35 119-153 5-42 (847)
349 COG1249 Lpd Pyruvate/2-oxoglut 90.0 0.44 9.6E-06 51.4 5.2 34 119-153 175-208 (454)
350 PRK01438 murD UDP-N-acetylmura 90.0 0.37 8E-06 52.7 4.8 32 119-151 18-49 (480)
351 COG4529 Uncharacterized protei 89.8 0.41 8.8E-06 51.1 4.7 36 118-153 2-39 (474)
352 TIGR02732 zeta_caro_desat caro 89.8 0.69 1.5E-05 50.5 6.7 35 119-154 1-35 (474)
353 PRK06129 3-hydroxyacyl-CoA deh 89.5 0.4 8.7E-06 49.1 4.3 32 119-151 4-35 (308)
354 TIGR02733 desat_CrtD C-3',4' d 89.5 0.83 1.8E-05 50.0 7.1 60 321-389 238-299 (492)
355 PRK02705 murD UDP-N-acetylmura 89.3 0.41 8.9E-06 52.0 4.5 32 120-152 3-34 (459)
356 PRK05249 soluble pyridine nucl 89.2 0.48 1E-05 51.4 4.9 34 118-152 176-209 (461)
357 PRK13512 coenzyme A disulfide 89.2 0.44 9.5E-06 51.4 4.5 33 119-152 150-182 (438)
358 PRK12921 2-dehydropantoate 2-r 89.2 0.44 9.5E-06 48.6 4.3 29 120-149 3-31 (305)
359 PRK06522 2-dehydropantoate 2-r 88.9 0.5 1.1E-05 48.0 4.5 30 120-150 3-32 (304)
360 PRK06292 dihydrolipoamide dehy 88.7 0.54 1.2E-05 51.0 4.9 34 118-152 170-203 (460)
361 TIGR03452 mycothione_red mycot 88.6 0.55 1.2E-05 50.9 4.7 34 118-152 170-203 (452)
362 COG1252 Ndh NADH dehydrogenase 88.6 0.37 8E-06 51.0 3.3 51 324-391 218-268 (405)
363 TIGR02734 crtI_fam phytoene de 88.4 0.95 2.1E-05 49.7 6.6 35 120-155 1-35 (502)
364 TIGR01424 gluta_reduc_2 glutat 88.4 0.59 1.3E-05 50.6 4.9 33 119-152 168-200 (446)
365 PRK12775 putative trifunctiona 88.4 6.1 0.00013 47.3 13.6 30 119-149 573-603 (1006)
366 PRK08293 3-hydroxybutyryl-CoA 88.4 0.58 1.3E-05 47.4 4.5 32 119-151 5-36 (287)
367 PF02254 TrkA_N: TrkA-N domain 88.1 0.78 1.7E-05 39.2 4.6 31 120-151 1-31 (116)
368 PRK14106 murD UDP-N-acetylmura 88.0 0.61 1.3E-05 50.4 4.7 33 118-151 6-38 (450)
369 PRK09260 3-hydroxybutyryl-CoA 87.7 0.63 1.4E-05 47.1 4.3 31 120-151 4-34 (288)
370 PRK06718 precorrin-2 dehydroge 87.7 0.72 1.6E-05 44.2 4.4 31 118-149 11-41 (202)
371 PF01488 Shikimate_DH: Shikima 87.7 0.8 1.7E-05 40.8 4.4 32 118-150 13-45 (135)
372 PRK06719 precorrin-2 dehydroge 87.5 0.78 1.7E-05 42.1 4.4 30 118-148 14-43 (157)
373 PRK07066 3-hydroxybutyryl-CoA 87.4 0.72 1.6E-05 47.5 4.5 31 120-151 10-40 (321)
374 PRK06116 glutathione reductase 87.4 0.75 1.6E-05 49.8 4.9 34 118-152 168-201 (450)
375 PRK09564 coenzyme A disulfide 87.4 0.7 1.5E-05 49.8 4.7 34 118-152 150-183 (444)
376 PF13241 NAD_binding_7: Putati 87.3 0.46 1E-05 40.1 2.6 32 118-150 8-39 (103)
377 PTZ00153 lipoamide dehydrogena 87.3 0.73 1.6E-05 52.3 4.8 33 119-152 314-346 (659)
378 TIGR02731 phytoene_desat phyto 87.1 1.1 2.4E-05 48.4 6.1 54 321-382 219-274 (453)
379 PLN02507 glutathione reductase 87.0 0.78 1.7E-05 50.4 4.8 33 119-152 205-237 (499)
380 TIGR03143 AhpF_homolog putativ 86.9 0.7 1.5E-05 51.5 4.5 34 119-153 145-178 (555)
381 PRK07819 3-hydroxybutyryl-CoA 86.9 0.73 1.6E-05 46.7 4.2 33 119-152 7-39 (286)
382 TIGR02354 thiF_fam2 thiamine b 86.7 0.88 1.9E-05 43.5 4.4 33 117-150 21-54 (200)
383 PRK08229 2-dehydropantoate 2-r 86.6 0.77 1.7E-05 47.6 4.3 31 119-150 4-34 (341)
384 PRK08010 pyridine nucleotide-d 86.5 0.91 2E-05 49.0 5.0 33 119-152 160-192 (441)
385 TIGR01470 cysG_Nterm siroheme 86.5 0.9 2E-05 43.6 4.4 30 119-149 11-40 (205)
386 PRK04148 hypothetical protein; 86.4 0.74 1.6E-05 40.9 3.4 32 119-152 19-50 (134)
387 PLN02487 zeta-carotene desatur 86.4 1.2 2.6E-05 49.6 5.9 37 117-154 75-111 (569)
388 PRK07530 3-hydroxybutyryl-CoA 86.1 0.94 2E-05 46.0 4.5 32 119-151 6-37 (292)
389 TIGR01316 gltA glutamate synth 86.0 0.92 2E-05 49.1 4.7 32 119-151 274-305 (449)
390 PLN02546 glutathione reductase 86.0 0.91 2E-05 50.5 4.7 33 119-152 254-286 (558)
391 PF00899 ThiF: ThiF family; I 86.0 1.2 2.7E-05 39.4 4.7 34 118-152 3-37 (135)
392 PRK15116 sulfur acceptor prote 85.9 0.98 2.1E-05 45.2 4.4 34 117-151 30-64 (268)
393 KOG3923|consensus 85.8 0.85 1.8E-05 45.6 3.8 32 117-148 3-40 (342)
394 PRK13748 putative mercuric red 85.8 0.95 2E-05 50.5 4.8 31 119-150 272-302 (561)
395 PRK07688 thiamine/molybdopteri 85.7 1 2.2E-05 46.8 4.6 34 117-151 24-58 (339)
396 PRK06035 3-hydroxyacyl-CoA deh 85.6 1 2.2E-05 45.7 4.5 31 120-151 6-36 (291)
397 PRK12475 thiamine/molybdopteri 85.5 1 2.2E-05 46.8 4.5 34 118-152 25-59 (338)
398 COG1004 Ugd Predicted UDP-gluc 85.3 1 2.2E-05 47.0 4.2 32 119-151 2-33 (414)
399 PRK14694 putative mercuric red 85.2 1.1 2.4E-05 48.8 4.8 31 119-150 180-210 (468)
400 PRK14727 putative mercuric red 85.1 1.1 2.3E-05 49.1 4.7 31 119-150 190-220 (479)
401 PRK14620 NAD(P)H-dependent gly 85.1 1.1 2.3E-05 46.3 4.5 31 120-151 3-33 (326)
402 PRK12770 putative glutamate sy 85.0 1.1 2.3E-05 46.9 4.4 31 119-150 174-205 (352)
403 COG1748 LYS9 Saccharopine dehy 84.9 1.1 2.4E-05 47.1 4.4 33 119-152 3-36 (389)
404 PTZ00318 NADH dehydrogenase-li 84.7 1.2 2.6E-05 47.8 4.8 34 119-152 175-221 (424)
405 cd01483 E1_enzyme_family Super 84.4 1.4 3.1E-05 39.4 4.4 32 120-152 2-34 (143)
406 TIGR00518 alaDH alanine dehydr 84.2 1.3 2.7E-05 46.8 4.5 33 117-150 167-199 (370)
407 PRK05808 3-hydroxybutyryl-CoA 84.2 1.2 2.6E-05 44.9 4.3 31 119-150 5-35 (282)
408 COG3486 IucD Lysine/ornithine 84.0 1.8 3.9E-05 45.3 5.4 39 115-153 3-41 (436)
409 KOG1346|consensus 84.0 5.6 0.00012 41.7 8.8 77 328-418 405-481 (659)
410 PRK14618 NAD(P)H-dependent gly 83.9 1.3 2.8E-05 45.7 4.5 32 119-151 6-37 (328)
411 PTZ00052 thioredoxin reductase 83.7 1.2 2.7E-05 48.9 4.4 31 119-150 184-214 (499)
412 cd01075 NAD_bind_Leu_Phe_Val_D 83.7 1.5 3.2E-05 41.9 4.5 31 119-150 30-60 (200)
413 cd01080 NAD_bind_m-THF_DH_Cycl 83.6 1.6 3.5E-05 40.5 4.5 33 117-150 44-77 (168)
414 PF01262 AlaDh_PNT_C: Alanine 83.6 1.7 3.6E-05 40.2 4.6 32 118-150 21-52 (168)
415 TIGR01763 MalateDH_bact malate 83.4 1.4 3.1E-05 45.0 4.5 30 120-150 4-34 (305)
416 cd01487 E1_ThiF_like E1_ThiF_l 83.3 1.6 3.6E-05 40.6 4.5 31 120-151 2-33 (174)
417 PRK00094 gpsA NAD(P)H-dependen 82.7 1.5 3.2E-05 45.1 4.3 32 119-151 3-34 (325)
418 PRK12549 shikimate 5-dehydroge 82.5 1.6 3.6E-05 44.1 4.4 33 118-151 128-161 (284)
419 PRK12548 shikimate 5-dehydroge 82.4 1.6 3.5E-05 44.3 4.3 32 119-151 128-160 (289)
420 TIGR01423 trypano_reduc trypan 82.3 1.5 3.3E-05 48.0 4.4 33 119-152 189-224 (486)
421 TIGR02356 adenyl_thiF thiazole 82.3 1.8 4E-05 41.4 4.5 34 117-151 21-55 (202)
422 cd05311 NAD_bind_2_malic_enz N 82.3 1.6 3.5E-05 42.6 4.1 32 119-151 27-61 (226)
423 COG1893 ApbA Ketopantoate redu 82.1 1.5 3.3E-05 44.9 4.0 32 120-152 3-34 (307)
424 cd05292 LDH_2 A subgroup of L- 82.0 1.9 4E-05 44.3 4.7 33 119-152 2-36 (308)
425 PLN02545 3-hydroxybutyryl-CoA 82.0 1.8 3.8E-05 44.0 4.5 31 120-151 7-37 (295)
426 TIGR03026 NDP-sugDHase nucleot 81.9 1.6 3.5E-05 46.6 4.4 32 120-152 3-34 (411)
427 cd00401 AdoHcyase S-adenosyl-L 81.8 1.8 4E-05 46.0 4.6 32 119-151 204-235 (413)
428 PRK02472 murD UDP-N-acetylmura 81.6 1.7 3.6E-05 47.0 4.4 32 119-151 7-38 (447)
429 PRK11064 wecC UDP-N-acetyl-D-m 81.5 1.7 3.8E-05 46.5 4.4 33 119-152 5-37 (415)
430 PRK06130 3-hydroxybutyryl-CoA 81.1 2.3 4.9E-05 43.6 5.0 31 119-150 6-36 (311)
431 COG0686 Ald Alanine dehydrogen 80.0 1.7 3.7E-05 43.8 3.4 33 117-150 168-200 (371)
432 PRK11749 dihydropyrimidine deh 79.9 2.2 4.8E-05 46.2 4.6 31 119-150 275-306 (457)
433 cd05291 HicDH_like L-2-hydroxy 79.7 2.6 5.5E-05 43.2 4.8 32 120-152 3-36 (306)
434 TIGR02279 PaaC-3OHAcCoADH 3-hy 79.6 2.2 4.7E-05 46.9 4.5 33 119-152 7-39 (503)
435 TIGR02355 moeB molybdopterin s 79.6 2.6 5.7E-05 41.5 4.6 34 117-151 24-58 (240)
436 PRK08328 hypothetical protein; 79.5 2.5 5.4E-05 41.4 4.4 33 117-150 27-60 (231)
437 TIGR01915 npdG NADPH-dependent 79.2 2.7 5.8E-05 40.7 4.5 31 120-151 3-34 (219)
438 PRK14619 NAD(P)H-dependent gly 78.9 2.5 5.4E-05 43.3 4.4 32 119-151 6-37 (308)
439 TIGR02853 spore_dpaA dipicolin 78.3 2.7 5.9E-05 42.6 4.4 33 118-151 152-184 (287)
440 PLN02353 probable UDP-glucose 78.3 2.5 5.4E-05 46.0 4.4 34 119-152 3-37 (473)
441 PRK08644 thiamine biosynthesis 78.3 3 6.4E-05 40.3 4.4 33 117-150 28-61 (212)
442 PLN02520 bifunctional 3-dehydr 78.2 2.5 5.5E-05 46.8 4.4 31 119-150 381-411 (529)
443 TIGR03736 PRTRC_ThiF PRTRC sys 78.2 2.9 6.2E-05 41.2 4.3 35 116-150 10-54 (244)
444 PRK11730 fadB multifunctional 78.1 2.4 5.2E-05 48.8 4.4 33 119-152 315-347 (715)
445 PLN02172 flavin-containing mon 78.1 2.4 5.2E-05 46.1 4.1 32 119-151 206-237 (461)
446 COG2072 TrkA Predicted flavopr 77.6 2.6 5.7E-05 45.5 4.3 35 118-153 176-210 (443)
447 PF13478 XdhC_C: XdhC Rossmann 77.6 2.8 6E-05 37.4 3.7 30 120-150 1-30 (136)
448 TIGR02437 FadB fatty oxidation 77.5 2.6 5.5E-05 48.5 4.4 33 119-152 315-347 (714)
449 PRK07417 arogenate dehydrogena 77.3 2.8 6E-05 42.3 4.1 30 120-150 3-32 (279)
450 PRK08017 oxidoreductase; Provi 77.3 3.2 7E-05 40.6 4.6 30 120-150 5-35 (256)
451 PRK08223 hypothetical protein; 77.2 3.1 6.8E-05 42.0 4.4 34 117-151 27-61 (287)
452 PRK08268 3-hydroxy-acyl-CoA de 77.1 2.9 6.3E-05 46.0 4.5 32 120-152 10-41 (507)
453 cd01339 LDH-like_MDH L-lactate 77.0 3 6.5E-05 42.5 4.3 32 120-152 1-33 (300)
454 PLN02612 phytoene desaturase 76.9 4.3 9.3E-05 45.4 5.9 45 328-382 320-364 (567)
455 cd00757 ThiF_MoeB_HesA_family 76.9 3.3 7.1E-05 40.4 4.4 33 117-150 21-54 (228)
456 PRK07531 bifunctional 3-hydrox 76.8 2.9 6.4E-05 45.9 4.4 32 119-151 6-37 (495)
457 KOG2495|consensus 76.7 1.4 3E-05 46.3 1.7 35 118-152 219-266 (491)
458 TIGR00507 aroE shikimate 5-deh 76.6 3.3 7.2E-05 41.5 4.5 32 119-151 119-150 (270)
459 cd05191 NAD_bind_amino_acid_DH 76.4 4.8 0.0001 32.5 4.6 31 119-149 25-55 (86)
460 PRK05690 molybdopterin biosynt 76.4 3.6 7.7E-05 40.7 4.5 33 117-150 32-65 (245)
461 TIGR00936 ahcY adenosylhomocys 76.3 3.4 7.4E-05 43.9 4.6 32 119-151 197-228 (406)
462 PRK12778 putative bifunctional 75.9 3 6.5E-05 48.4 4.4 32 119-151 572-604 (752)
463 PRK06223 malate dehydrogenase; 75.9 3.6 7.8E-05 42.0 4.6 32 119-151 4-36 (307)
464 PTZ00082 L-lactate dehydrogena 75.8 4 8.7E-05 42.1 4.9 33 119-152 8-41 (321)
465 PRK05562 precorrin-2 dehydroge 75.7 3.8 8.3E-05 39.8 4.4 30 118-148 26-55 (223)
466 cd01486 Apg7 Apg7 is an E1-lik 75.7 3.8 8.2E-05 41.6 4.5 32 120-152 2-34 (307)
467 PF00670 AdoHcyase_NAD: S-aden 75.5 3.6 7.9E-05 37.7 3.9 32 119-151 25-56 (162)
468 TIGR01381 E1_like_apg7 E1-like 75.3 3.5 7.6E-05 46.0 4.4 35 117-152 338-373 (664)
469 cd01485 E1-1_like Ubiquitin ac 75.0 4.2 9.2E-05 38.7 4.5 33 117-150 19-52 (198)
470 cd01078 NAD_bind_H4MPT_DH NADP 74.9 4.4 9.5E-05 38.3 4.6 32 118-150 29-61 (194)
471 PRK14027 quinate/shikimate deh 74.8 4 8.6E-05 41.3 4.4 31 119-150 129-160 (283)
472 cd01484 E1-2_like Ubiquitin ac 74.8 4.1 9E-05 39.9 4.4 30 120-150 2-32 (234)
473 PRK07233 hypothetical protein; 74.8 4.7 0.0001 43.0 5.4 56 321-389 204-259 (434)
474 COG1250 FadB 3-hydroxyacyl-CoA 74.7 3.4 7.4E-05 42.1 3.9 31 120-151 6-36 (307)
475 PRK09424 pntA NAD(P) transhydr 74.5 3.9 8.4E-05 44.8 4.5 34 117-151 165-198 (509)
476 PRK09496 trkA potassium transp 74.5 3.6 7.9E-05 44.4 4.4 33 119-152 2-34 (453)
477 cd01490 Ube1_repeat2 Ubiquitin 74.5 3.7 8E-05 44.0 4.3 32 120-152 2-39 (435)
478 PF03807 F420_oxidored: NADP o 74.4 4.6 0.0001 33.1 4.1 32 120-152 2-37 (96)
479 PRK04308 murD UDP-N-acetylmura 74.3 4.2 9.2E-05 43.9 4.9 33 119-152 7-39 (445)
480 PRK00258 aroE shikimate 5-dehy 74.3 4.1 9E-05 41.0 4.5 32 119-151 125-157 (278)
481 PRK12550 shikimate 5-dehydroge 74.3 4 8.8E-05 41.0 4.3 32 119-151 124-156 (272)
482 PRK05476 S-adenosyl-L-homocyst 74.2 4.1 8.9E-05 43.6 4.6 32 119-151 214-245 (425)
483 TIGR02441 fa_ox_alpha_mit fatt 74.1 3.4 7.3E-05 47.7 4.2 33 119-152 337-369 (737)
484 KOG2304|consensus 74.1 3.2 6.9E-05 39.9 3.3 34 118-152 12-45 (298)
485 PRK08306 dipicolinate synthase 74.1 4.3 9.4E-05 41.3 4.6 32 118-150 153-184 (296)
486 TIGR01809 Shik-DH-AROM shikima 74.0 4.2 9.2E-05 41.1 4.4 32 118-150 126-158 (282)
487 PRK08762 molybdopterin biosynt 74.0 4.2 9.1E-05 42.9 4.6 34 117-151 135-169 (376)
488 PF03446 NAD_binding_2: NAD bi 73.9 4.9 0.00011 36.8 4.5 32 119-151 3-34 (163)
489 cd01492 Aos1_SUMO Ubiquitin ac 73.7 4.7 0.0001 38.4 4.5 33 117-150 21-54 (197)
490 COG3634 AhpF Alkyl hydroperoxi 73.6 2.9 6.3E-05 42.8 3.0 34 118-152 355-388 (520)
491 PRK06057 short chain dehydroge 73.4 4.7 0.0001 39.6 4.5 31 119-150 9-40 (255)
492 PRK06505 enoyl-(acyl carrier p 73.1 4.5 9.8E-05 40.4 4.4 31 119-150 9-42 (271)
493 KOG2018|consensus 73.1 4.1 8.8E-05 41.0 3.9 28 120-148 77-105 (430)
494 cd00755 YgdL_like Family of ac 73.1 4.7 0.0001 39.5 4.3 32 118-150 12-44 (231)
495 PRK07774 short chain dehydroge 72.8 5 0.00011 39.1 4.6 31 119-150 8-39 (250)
496 PRK07326 short chain dehydroge 72.7 4.7 0.0001 38.9 4.3 30 120-150 9-39 (237)
497 PRK07831 short chain dehydroge 72.7 5 0.00011 39.6 4.6 32 119-151 19-52 (262)
498 PLN02494 adenosylhomocysteinas 72.6 5 0.00011 43.3 4.7 33 118-151 255-287 (477)
499 PRK01710 murD UDP-N-acetylmura 72.6 4.4 9.6E-05 44.0 4.5 32 119-151 16-47 (458)
500 PRK10669 putative cation:proto 72.1 4 8.7E-05 45.5 4.1 35 117-152 417-451 (558)
No 1
>KOG1238|consensus
Probab=100.00 E-value=2.9e-77 Score=630.96 Aligned_cols=445 Identities=43% Similarity=0.684 Sum_probs=390.3
Q ss_pred CCCCcccEEEECCChhHHHHHHHHHhcCCCeEEEEecCCCCCCccccCCccccccCCCCcCCcccCCCcccccCCCCCce
Q psy1042 113 DDDMTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIEEPFFADVPGLAPLISRSNIDWNYMTMPEPHACKARPNGRC 192 (567)
Q Consensus 113 ~~~~~yDvIVVGsG~aG~~aA~~Lae~~G~~VlVLE~G~~~~~~~~~p~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 192 (567)
....+|||||||||.|||++|.+|+|.|.++|||||||+......++|.....++.+.++|.|.++|++..|..+.++.|
T Consensus 53 ~~~~~yDyIVVGgGtAGcvlAarLSEn~~~~VLLLEaGg~~~~~~~~p~~~~~~q~s~~dw~y~t~Ps~~ac~~m~~~~c 132 (623)
T KOG1238|consen 53 ELDSSYDYIVVGGGTAGCVLAARLSENPNWSVLLLEAGGDPPLYSDPPLLAANLQLSLYDWSYHTEPSQHACLAMSEDRC 132 (623)
T ss_pred ccccCCCEEEECCCchhHHHHHhhccCCCceEEEEecCCCCcccccchHHHHHhccccccccCcCccChhhhhhhcCCce
Confidence 35578999999999999999999999989999999999998766778866777888999999999999999999999999
Q ss_pred eeeceeEeccccccceeEEecCChhhHHHHHHcCCCCCChhhHHHHHHhhccCCCCcccCCCCCCCCCCCceeeecCCCC
Q psy1042 193 YWARGKVMGGSSTINYMIYARGNAEDYDEWEAMGNEGWGYDEVLEYFKKSEDNEDKEIYHKNPEYHGKGGYQTVEWLPYA 272 (567)
Q Consensus 193 ~~~~g~~lGGsS~~n~~~~~r~~~~d~~~w~~~g~~~w~~~~l~~y~~~~e~~~~~~~~~~~~~~~g~~G~l~~~~~~~~ 272 (567)
.|+|||+|||+|.+|+|+|.|+++.|||.|++.|+++|+|+++++||+++|....+.. ..++ +|+..|++.+....+.
T Consensus 133 ~wpRGrVLGGsS~iN~m~Y~RG~r~Dyd~W~~~gnpgW~y~~vl~yf~k~E~~~~~~~-~~~~-y~~~~g~~~ve~~~~~ 210 (623)
T KOG1238|consen 133 YWPRGRVLGGSSVLNAMFYVRGNRRDYDRWAAEGNPGWSYDEVLPYFKKSEDKVVPDP-ELTP-YHGAGGPLLVEAGVYP 210 (623)
T ss_pred ecCccceecccccccceEEecCCccchHHHHHhcCCCCCHHHHHHHHHHHhhccCCCc-ccCc-ccccCCcceecccccc
Confidence 9999999999999999999999999999999999999999999999999999877654 3445 9999999999999999
Q ss_pred CchHHHHHHHHHhcCCCCCCCCCCCceeeeeeccccCCCcccchhHHhhHHHHhcCCCeEEecceEEEEEEeCCCCCCCC
Q psy1042 273 DKNLPVLIKAWKEKGYPERDLNAENQIGVMHLQTTTRHGERLSTNGAFIRPIRKKRKNLTILTEAHVTRIICDKTPNKHK 352 (567)
Q Consensus 273 ~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~~~~~~~~~g~r~s~~~~~L~~a~~~~~gv~I~~~t~V~~I~~d~~~~~~~ 352 (567)
.+....+.++..++|.+..|+||....|+...+.+.++|.|+++..+|+.++...|+|+.|..++.|++|++|..+.
T Consensus 211 ~~~~~~~~~ag~e~G~~~~D~nG~~~tg~~~l~~t~~~g~R~s~~~a~l~~~~~~R~NL~~~~~~~vtrvl~D~~~~--- 287 (623)
T KOG1238|consen 211 NNLFTAFHRAGTEIGGSIFDRNGERHTGASLLQYTIRNGIRVSLAKAYLKPIRLTRPNLHISRNAAVTRVLIDPAGK--- 287 (623)
T ss_pred CchhhHhHHhHHhcCCCccCCCCccccchhhhhccccCCEEEEehhhhhhhhhccCccccccccceEEEEEEcCCCc---
Confidence 99999999999999988889999999999999999999999999999999887647899999999999999998777
Q ss_pred ccEEEEEEEEeC-CEEEEEEcCcEEEEcCCCCccHHHHHhCCCCCcchhhhcCCcccccCC-cchhhhhccCCcceEEEc
Q psy1042 353 KLVAKSVEFFYK-KKLRRARAKKEVISSAGAINSPKILMLSGIGPKDHLTSLNIKTLVDLK-VGHNLQDHLTSDGIVIAF 430 (567)
Q Consensus 353 ~~rv~GV~~~~~-g~~~~v~A~k~VVLAAGa~~Tp~LLl~SGIG~~~~L~~~gI~v~~~lp-VG~nl~dH~~~~~~~~~~ 430 (567)
++.||++.++ ++.++++|+|+||||||||+||+|||+|||||+++|+++|||++.||| ||+||+||+..+...+..
T Consensus 288 --~a~gv~~~~~~~~~~~v~a~kEVILSAGAi~SPQLLMLSGIGP~~~L~~~gIpvv~dLP~VG~nLqDH~~~~~~~~~~ 365 (623)
T KOG1238|consen 288 --RAKGVEFVRDGGKEHTVKARKEVILSAGAINSPQLLMLSGIGPADHLKKLGIPVVLDLPGVGQNLQDHPMNPGFVFST 365 (623)
T ss_pred --eEEEEEEEecCceeeeecccceEEEeccccCCHHHHHHcCCCcHHHHHhcCCCeeccCcccccccccccccceeeecC
Confidence 9999999988 899999999999999999999999999999999999999999999999 999999999986555544
Q ss_pred cCCcccccch-hhhhhhhHhhhhCCCCCCCCCccceeEEEeecccCCC-CCCCeeeeecCccccCCCC--CCCCCC---C
Q psy1042 431 PKTATDRMYK-KKVSDAFEYKESRCGPLASTGPLQCGVFAKTKLADSL-DVPDIQFHHDPMSVRDWIT--NPVNAS---S 503 (567)
Q Consensus 431 ~~~~~~~~~~-~~~~~~~~~~~~~~Gp~~~~~~~~~~~~~~~~~~~~~-~~p~~~~~~~~~~~~~d~~--~~~~~~---~ 503 (567)
. +.+..... .....+.+|+..++||+++.+ ++.++|+++.++... .+||+|+++.+..+..+.. +.+... +
T Consensus 366 ~-~~~~~~~~~~~~~~~~~yl~~~~G~~~~~~-~e~~~f~~t~~~~~~~~~PD~~~~~~~~~~~~~~~~~~~~~~~~~y~ 443 (623)
T KOG1238|consen 366 N-PVELSLIRLVGITTVGQYLEGGSGPLASPG-VETLGFINTVSSNLSLDWPDIELHFVAGSLSSDGLTALRKALGEIYQ 443 (623)
T ss_pred C-CccccccccccchHHHHHHHcCCCCcccCc-ceeeEEeccccccCcCCCCCeeEEeccccccccchhhhhhhcchHHH
Confidence 4 43332222 455778899999999998766 899999999886644 7899999987766655542 111111 1
Q ss_pred CCCCCCCCCCcEEEEEeccccCCceEEEeeCCCCCCCCCeeeCCCCCChHHHHHHHHH-HHhhcC
Q psy1042 504 TNMSPFAYYDGITVRPILLKPKSRGYIQLNATDPLWGPPLIFPKFFTKKPDLDVFVAG-EFATDV 567 (567)
Q Consensus 504 ~~~~~~~~~~~~~~~~~~~~P~SrG~V~L~s~dp~~~~P~I~~~y~~~~~D~~~~~~~-r~~~~~ 567 (567)
+.+.+......+.++..+++|.|||+|+|+|+||. +.|.|++|||+||.|++.++++ |.+.+|
T Consensus 444 ~~~~~~~~~~~~~i~~~~l~P~SrG~l~L~s~nP~-~~P~I~~NY~~~p~Dv~~~vegi~~~~~l 507 (623)
T KOG1238|consen 444 ALFGELTNSDSFVIFPKLLRPKSRGRLKLRSTNPR-DNPLITPNYFTHPEDVATLVEGIRTIIRL 507 (623)
T ss_pred HhhhhhhcCceeEEeehhcCCCccceEEecCCCCC-cCceeccCcCCCHHHHHHHHHHHHHHHHH
Confidence 12223333456888899999999999999999999 9999999999999999999999 998764
No 2
>PRK02106 choline dehydrogenase; Validated
Probab=100.00 E-value=2.5e-61 Score=532.64 Aligned_cols=420 Identities=39% Similarity=0.605 Sum_probs=326.7
Q ss_pred CCcccEEEECCChhHHHHHHHHHhcCCCeEEEEecCCCC---CCccccCCcccc-ccCCCCcCCcccCCCcccccCCCCC
Q psy1042 115 DMTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIEE---PFFADVPGLAPL-ISRSNIDWNYMTMPEPHACKARPNG 190 (567)
Q Consensus 115 ~~~yDvIVVGsG~aG~~aA~~Lae~~G~~VlVLE~G~~~---~~~~~~p~~~~~-~~~~~~~~~~~~~p~~~~~~~~~~~ 190 (567)
..+|||||||||++|+++|.+||+++|.+|||||+|+.. ......|..... .....++|.|.+.|++. ..++
T Consensus 3 ~~~~D~iIVG~G~aG~vvA~rLae~~g~~VlvlEaG~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~p~~~----~~~~ 78 (560)
T PRK02106 3 TMEYDYIIIGAGSAGCVLANRLSEDPDVSVLLLEAGGPDYRWDFFIQMPAALAFPLQGKRYNWAYETEPEPH----MNNR 78 (560)
T ss_pred CCcCcEEEECCcHHHHHHHHHHHhCCCCeEEEecCCCcccCCCcceeCcHHHHHhcCCCceeeceecccCCC----CCCC
Confidence 456999999999999999999999449999999999753 222233432211 12345688888888765 4567
Q ss_pred ceeeeceeEeccccccceeEEecCChhhHHHHHHc-CCCCCChhhHHHHHHhhccCCCCcccCCCCCCCCCCCceeeecC
Q psy1042 191 RCYWARGKVMGGSSTINYMIYARGNAEDYDEWEAM-GNEGWGYDEVLEYFKKSEDNEDKEIYHKNPEYHGKGGYQTVEWL 269 (567)
Q Consensus 191 ~~~~~~g~~lGGsS~~n~~~~~r~~~~d~~~w~~~-g~~~w~~~~l~~y~~~~e~~~~~~~~~~~~~~~g~~G~l~~~~~ 269 (567)
.+.|.+|++|||+|.+|+|+|.|+.+.||+.|+.. |..+|+|++|+|||+++|.+... .+ .+|+..|++.+...
T Consensus 79 ~~~~~~g~~lGGsS~iN~~~~~R~~~~Dfd~w~~~~g~~~Ws~~~l~py~~k~E~~~~~----~~-~~~g~~gp~~~~~~ 153 (560)
T PRK02106 79 RMECPRGKVLGGSSSINGMVYIRGNAMDYDNWAELPGLEGWSYADCLPYFKKAETRDGG----ED-DYRGGDGPLSVTRG 153 (560)
T ss_pred eeecccccccCCCCCccceEEecCCHHHHHHHHhhcCCCCCCHHHHHHHHHHhhccCCC----Cc-cccCCCCCEEEeCC
Confidence 78899999999999999999999999999999987 88899999999999999988632 12 26788899988755
Q ss_pred -CCCCchHHHHHHHHHhcCCCCC-CCCCCCceeeeeeccccCCCcccchhHHhhHHHHhcCCCeEEecceEEEEEEeCCC
Q psy1042 270 -PYADKNLPVLIKAWKEKGYPER-DLNAENQIGVMHLQTTTRHGERLSTNGAFIRPIRKKRKNLTILTEAHVTRIICDKT 347 (567)
Q Consensus 270 -~~~~~~~~~~~~~~~~~G~~~~-~~~~~~~~g~~~~~~~~~~g~r~s~~~~~L~~a~~~~~gv~I~~~t~V~~I~~d~~ 347 (567)
....+....+.++++++|++.. +.+++...|++.+...|..|.|.++..+||.++.+ +.|++|+++|.|++|+++
T Consensus 154 ~~~~~~~~~~~~~a~~~lG~~~~~~~~~~~~~g~~~~~~~~~~g~R~s~~~~~l~~a~~-~~nl~i~~~a~V~rI~~~-- 230 (560)
T PRK02106 154 KPGTNPLFQAFVEAGVQAGYPRTDDLNGYQQEGFGPMDRTVTNGRRWSAARAYLDPALK-RPNLTIVTHALTDRILFE-- 230 (560)
T ss_pred CCCCCHHHHHHHHHHHHcCCCcCCCCCCCCCceeEEEeeecCCCEEEChHHHhhccccC-CCCcEEEcCCEEEEEEEe--
Confidence 4456777889999999999874 77777778888887788899999999999999887 899999999999999998
Q ss_pred CCCCCccEEEEEEEEeCCEEEEEEcCcEEEEcCCCCccHHHHHhCCCCCcchhhhcCCcccccCC-cchhhhhccCCcce
Q psy1042 348 PNKHKKLVAKSVEFFYKKKLRRARAKKEVISSAGAINSPKILMLSGIGPKDHLTSLNIKTLVDLK-VGHNLQDHLTSDGI 426 (567)
Q Consensus 348 ~~~~~~~rv~GV~~~~~g~~~~v~A~k~VVLAAGa~~Tp~LLl~SGIG~~~~L~~~gI~v~~~lp-VG~nl~dH~~~~~~ 426 (567)
++ +|+||++.+.+...++.+.|+||||||+++||+|||+|||||+++|+++||++++|+| ||+|||||+.+ .+
T Consensus 231 ~~-----~a~GV~~~~~~~~~~~~~ak~VILaaGai~TP~LLl~SGIG~~~~L~~~gI~~~~dlP~VG~NL~dH~~~-~~ 304 (560)
T PRK02106 231 GK-----RAVGVEYERGGGRETARARREVILSAGAINSPQLLQLSGIGPAEHLKELGIPVVHDLPGVGENLQDHLEV-YI 304 (560)
T ss_pred CC-----eEEEEEEEeCCcEEEEEeeeeEEEccCCCCCHHHHhhcCCCChHHHHhcCCceEeeCCCCCcChhhCccc-eE
Confidence 45 8999999876544445444799999999999999999999999999999999999999 99999999998 57
Q ss_pred EEEccCCcccccc--h-hhhhhhhHhhhhCCCCCCCCCccceeEEEeecccCCCCCCCeeeeecCccccCCCCCCCCCCC
Q psy1042 427 VIAFPKTATDRMY--K-KKVSDAFEYKESRCGPLASTGPLQCGVFAKTKLADSLDVPDIQFHHDPMSVRDWITNPVNASS 503 (567)
Q Consensus 427 ~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~Gp~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~d~~~~~~~~~ 503 (567)
.|.++++...... . .......+|+..++|+++.. ..+..+|.+..... ..|++++.+.+....... .
T Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~--~~p~~~~~~~~~~~~~~~-----~-- 374 (560)
T PRK02106 305 QYECKQPVSLYPALKWWNKPKIGAEWLFTGTGLGASN-HFEAGGFIRSRAGV--DWPNIQYHFLPVAIRYDG-----S-- 374 (560)
T ss_pred EEEeCCCcccccccchhhhhHHHHHHHhcCCCCcccc-ccceeeEEecCCCC--CCCCeEEEEeeccccccC-----C--
Confidence 8887765332111 1 11122346777788887643 24444565543211 346666554332111000 0
Q ss_pred CCCCCCCCCCcEEEEEeccccCCceEEEeeCCCCCCCCCeeeCCCCCChHHHHHHHHH-HHhhcC
Q psy1042 504 TNMSPFAYYDGITVRPILLKPKSRGYIQLNATDPLWGPPLIFPKFFTKKPDLDVFVAG-EFATDV 567 (567)
Q Consensus 504 ~~~~~~~~~~~~~~~~~~~~P~SrG~V~L~s~dp~~~~P~I~~~y~~~~~D~~~~~~~-r~~~~~ 567 (567)
.......+++.+.+++|+|||+|+|+++||+ +.|.|+++|+.+|.|++.|+++ |++++|
T Consensus 375 ----~~~~~~~~~~~~~~~~P~srG~V~L~s~d~~-~~P~i~~~y~~~~~D~~~~~~~~~~~~~i 434 (560)
T PRK02106 375 ----NAVKGHGFQAHVGPMRSPSRGSVKLKSADPR-AHPSILFNYMSTEQDWREFRDAIRLTREI 434 (560)
T ss_pred ----CCCCCCeEEEEEEecCCcceEEEEEeCCCCc-cCceEccccCCCHHHHHHHHHHHHHHHHH
Confidence 0001234666667788999999999999998 9999999999999999999999 998864
No 3
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=100.00 E-value=4e-61 Score=528.28 Aligned_cols=416 Identities=37% Similarity=0.542 Sum_probs=325.9
Q ss_pred cEEEECCChhHHHHHHHHHhcCCCeEEEEecCCCCC---CccccCCcccc-ccCCCCcCCcccCCCcccccCCCCCceee
Q psy1042 119 DFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIEEP---FFADVPGLAPL-ISRSNIDWNYMTMPEPHACKARPNGRCYW 194 (567)
Q Consensus 119 DvIVVGsG~aG~~aA~~Lae~~G~~VlVLE~G~~~~---~~~~~p~~~~~-~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 194 (567)
||||||||++|+++|.+||++++.+|||||+|+... .....|..... ...+.++|.|.+.|++. +.++.+.|
T Consensus 1 D~iIVG~G~aG~vvA~rLs~~~~~~VlvlEaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~----~~~~~~~~ 76 (532)
T TIGR01810 1 DYIIIGGGSAGSVLAGRLSEDVSNSVLVLEAGGSDYPWDLLIQMPAALAYPAGNKRYNWIYETEPEPH----MNNRRVGH 76 (532)
T ss_pred CEEEECCCchHHHHHHHhccCCCCeEEEEecCCCCCCCCcceeCcHHHHHhcCCCCcceeeEcccCCC----CCCceEee
Confidence 899999999999999999998337999999997532 22233332211 22345689988888775 45778899
Q ss_pred eceeEeccccccceeEEecCChhhHHHHHH-cCCCCCChhhHHHHHHhhccCCCCcccCCCCCCCCCCCceeeecCCCCC
Q psy1042 195 ARGKVMGGSSTINYMIYARGNAEDYDEWEA-MGNEGWGYDEVLEYFKKSEDNEDKEIYHKNPEYHGKGGYQTVEWLPYAD 273 (567)
Q Consensus 195 ~~g~~lGGsS~~n~~~~~r~~~~d~~~w~~-~g~~~w~~~~l~~y~~~~e~~~~~~~~~~~~~~~g~~G~l~~~~~~~~~ 273 (567)
.+|++|||+|.+|+|+|.|+.+.||+.|+. .|..+|+|++|+|||+++|..... .++ +|+..|++.+..+....
T Consensus 77 ~~g~~lGGss~in~~~~~R~~~~d~~~w~~~~g~~~W~~~~l~py~~~~E~~~~~----~~~-~~g~~G~~~v~~~~~~~ 151 (532)
T TIGR01810 77 ARGKVLGGSSSINGMIYQRGNPMDYEKWAKPEGMESWDYADCLPYYKRLETTFGG----EKP-YRGHDGPIKVRRGPADN 151 (532)
T ss_pred ecccccCCCCCEeeeEEecCCHHHHHHHHHhcCCCCCCHHHHHHHHHHHhccCCC----Ccc-cCCCCCCEEEecCCCCC
Confidence 999999999999999999999999999988 588899999999999999988653 123 78899999988777667
Q ss_pred chHHHHHHHHHhcCCCCC-CCCCCCceeeeeeccccCCCcccchhHHhhHHHHhcCCCeEEecceEEEEEEeCCCCCCCC
Q psy1042 274 KNLPVLIKAWKEKGYPER-DLNAENQIGVMHLQTTTRHGERLSTNGAFIRPIRKKRKNLTILTEAHVTRIICDKTPNKHK 352 (567)
Q Consensus 274 ~~~~~~~~~~~~~G~~~~-~~~~~~~~g~~~~~~~~~~g~r~s~~~~~L~~a~~~~~gv~I~~~t~V~~I~~d~~~~~~~ 352 (567)
+..+.+.++++++|++.. +.++....+++.+...|..|.|.++..+||.++.+ +.|++|+++|+|++|+++ ++
T Consensus 152 ~~~~~~~~a~~~~G~~~~~~~~~~~~~g~~~~~~~~~~g~r~s~~~~~l~~a~~-r~nl~i~~~~~V~rI~~~--~~--- 225 (532)
T TIGR01810 152 PLFQAFIEAGVEAGYNKTPDVNGFRQEGFGPMDSTVHNGRRVSAARAYLHPAMK-RPNLEVQTRAFVTKINFE--GN--- 225 (532)
T ss_pred HHHHHHHHHHHHcCCCccCCCCCCCccceEEEEEEcCCCEEEcHHHHHhhhhcc-CCCeEEEeCCEEEEEEec--CC---
Confidence 778899999999999864 67776677888777778899999999999999887 799999999999999997 45
Q ss_pred ccEEEEEEEEeCCEEEEEEcCcEEEEcCCCCccHHHHHhCCCCCcchhhhcCCcccccCC-cchhhhhccCCcceEEEcc
Q psy1042 353 KLVAKSVEFFYKKKLRRARAKKEVISSAGAINSPKILMLSGIGPKDHLTSLNIKTLVDLK-VGHNLQDHLTSDGIVIAFP 431 (567)
Q Consensus 353 ~~rv~GV~~~~~g~~~~v~A~k~VVLAAGa~~Tp~LLl~SGIG~~~~L~~~gI~v~~~lp-VG~nl~dH~~~~~~~~~~~ 431 (567)
+|+||++.+++...++.+.|+||||||+++||+||++|||||+++|+++||++++|+| ||+|||||+.+ .+.+.++
T Consensus 226 --ra~GV~~~~~~~~~~~~~ak~VIlaAGai~SP~LLl~SGIG~~~~L~~~gI~~~~~lp~VG~nL~DH~~~-~~~~~~~ 302 (532)
T TIGR01810 226 --RATGVEFKKGGRKEHTEANKEVILSAGAINSPQLLQLSGIGDAEHLRELGIEPRIHLPGVGENLQDHLEV-YVQHACK 302 (532)
T ss_pred --eEEEEEEEeCCcEEEEEEeeeEEEccCCCCCHHHHHhcCCCCHHHHHhcCCCeEeeCCccccchhhcccc-eeEEEec
Confidence 8999999876554455455799999999999999999999999999999999999999 99999999997 6788877
Q ss_pred CCcccccch---hhhhhhhHhhhhCCCCCCCCCccceeEEEeecccCCCCCCCeeeeecCccccCCCCCCCCCCCCCCCC
Q psy1042 432 KTATDRMYK---KKVSDAFEYKESRCGPLASTGPLQCGVFAKTKLADSLDVPDIQFHHDPMSVRDWITNPVNASSTNMSP 508 (567)
Q Consensus 432 ~~~~~~~~~---~~~~~~~~~~~~~~Gp~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 508 (567)
.+....... .......+|+..+.|++... ..+..+|.+..... ..|++++.+.+.....+. . +
T Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~--~~p~~~~~~~~~~~~~~~-----~------~ 368 (532)
T TIGR01810 303 QPVSLYPSLNWLKQPFIGAQWLFGRKGAGASN-HFEGGGFVRSNDDV--DYPNIQYHFLPVAIRYDG-----T------K 368 (532)
T ss_pred CCcccccccchhhhhHHHHHHHhcCCCCcccc-ccceeEEEecCCCC--CCCCeEEEEEeeeeccCC-----C------C
Confidence 653321110 11123346777778886642 34455666543211 357776655332110000 0 0
Q ss_pred CCCCCcEEEEEeccccCCceEEEeeCCCCCCCCCeeeCCCCCChHHHHHHHHH-HHhhcC
Q psy1042 509 FAYYDGITVRPILLKPKSRGYIQLNATDPLWGPPLIFPKFFTKKPDLDVFVAG-EFATDV 567 (567)
Q Consensus 509 ~~~~~~~~~~~~~~~P~SrG~V~L~s~dp~~~~P~I~~~y~~~~~D~~~~~~~-r~~~~~ 567 (567)
......+++.+..++|+|||+|+|+++||. +.|.|+++|++||.|++.|+++ |++++|
T Consensus 369 ~~~~~~~~~~~~~~~P~srG~V~L~s~dp~-~~P~i~~~y~~~~~D~~~~~~~~~~~~~i 427 (532)
T TIGR01810 369 APKAHGFQVHVGPMYSNSRGHVKIKSKDPF-EKPEIVFNYMSHEEDWREFREAIRVTREI 427 (532)
T ss_pred CCCCCcEEEEEeecCCCCceEEEecCCCCc-cCceeccccCCCHHHHHHHHHHHHHHHHH
Confidence 001124566667788999999999999999 9999999999999999999999 998874
No 4
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=100.00 E-value=8.4e-54 Score=467.13 Aligned_cols=421 Identities=37% Similarity=0.586 Sum_probs=338.7
Q ss_pred CCCcccEEEECCChhHHHHHHHHHhcCCCeEEEEecCCCCCC-ccccCCccccccCC-CCcCCcccCCCcccccCCCCCc
Q psy1042 114 DDMTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIEEPF-FADVPGLAPLISRS-NIDWNYMTMPEPHACKARPNGR 191 (567)
Q Consensus 114 ~~~~yDvIVVGsG~aG~~aA~~Lae~~G~~VlVLE~G~~~~~-~~~~p~~~~~~~~~-~~~~~~~~~p~~~~~~~~~~~~ 191 (567)
+..+|||||||||.+|+++|.+|++. |++|||||+|+.... ...+|..+...... ...|.|.+.++.. +.++.
T Consensus 4 ~~~~~D~vIVGsG~aG~~lA~rLs~~-g~~VllLEaG~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~----~~~r~ 78 (542)
T COG2303 4 MKMEYDYVIVGSGSAGSVLAARLSDA-GLSVLVLEAGGPDRRPLIQMPAAYAFLMNGPRYDWGFRTEPEPH----LRGRE 78 (542)
T ss_pred ccCCCCEEEECCCchhHHHHHHhcCC-CCeEEEEeCCCCCCccceecchhHhhhccCcccCCccccCcccC----CCCcc
Confidence 34679999999999999999999954 999999999986543 44566665555544 7889999988884 67889
Q ss_pred eeeeceeEeccccccceeEEecCChhhHHHHHHc-CCCCCChhhHHHHHHhhccCCCCcccCCCCCCCCCCCceeeecCC
Q psy1042 192 CYWARGKVMGGSSTINYMIYARGNAEDYDEWEAM-GNEGWGYDEVLEYFKKSEDNEDKEIYHKNPEYHGKGGYQTVEWLP 270 (567)
Q Consensus 192 ~~~~~g~~lGGsS~~n~~~~~r~~~~d~~~w~~~-g~~~w~~~~l~~y~~~~e~~~~~~~~~~~~~~~g~~G~l~~~~~~ 270 (567)
+.|++|++|||+|.+|+|+|.|+.+.||+.|++. |..+|.|++++|||+++|........ ..+..|+..||+.+....
T Consensus 79 ~~~~rgk~lGGsS~ing~~~~R~~~~Df~~w~~~~G~~~W~y~d~lPyf~~aE~~~~~~g~-~~~~~~g~~gp~~~~~~~ 157 (542)
T COG2303 79 LAWPRGKVLGGSSSINGMVYVRGHPEDFDAWAQESGAPGWPYDDVLPYFKRAEDLLGVGGQ-DLRTWHGGGGPLPVSPPR 157 (542)
T ss_pred ccccccCcccchhhhccceeecCCHHHHHHHHhhcCCCCCCccccHHHHHHHHhhcCCCCC-CCCCCcCCCCCccccCCC
Confidence 9999999999999999999999999999999886 67999999999999999997776331 102378899999887775
Q ss_pred CCCchHHHHHHHHHhcCCCCC-CCCCCCceeeeeeccccCCCcccchhHHhhHHHHhcCCCeEEecceEEEEEEeCCCCC
Q psy1042 271 YADKNLPVLIKAWKEKGYPER-DLNAENQIGVMHLQTTTRHGERLSTNGAFIRPIRKKRKNLTILTEAHVTRIICDKTPN 349 (567)
Q Consensus 271 ~~~~~~~~~~~~~~~~G~~~~-~~~~~~~~g~~~~~~~~~~g~r~s~~~~~L~~a~~~~~gv~I~~~t~V~~I~~d~~~~ 349 (567)
...+....+.++.+++|++.. ++++....|++.+..++..|.|+++..+||.++.+ ++|++|++++.|++|+++ ++
T Consensus 158 ~~~~~~~a~~~a~~~~G~~~~~~~~~~~~~g~g~~~~~~~~g~r~sa~~a~l~~a~~-~~nl~v~t~a~v~ri~~~--~~ 234 (542)
T COG2303 158 SPNPIARAFIEAGEQLGFPTTPDPNGADQEGFGPYCVTICNGRRWSAARAYLKPALK-RPNLTLLTGARVRRILLE--GD 234 (542)
T ss_pred CchHHHHHHHHHHHHcCCCcCcccccCCCCCcccceeeccCCeEeechhhcchhHhc-CCceEEecCCEEEEEEEE--CC
Confidence 567888999999999999875 78888888888887777799999999999999988 999999999999999999 56
Q ss_pred CCCccEEEEEEEEeCCE--EEEEEcCcEEEEcCCCCccHHHHHhCCCCCcchhhhcCCcccccCC-cchhhhhccCCcce
Q psy1042 350 KHKKLVAKSVEFFYKKK--LRRARAKKEVISSAGAINSPKILMLSGIGPKDHLTSLNIKTLVDLK-VGHNLQDHLTSDGI 426 (567)
Q Consensus 350 ~~~~~rv~GV~~~~~g~--~~~v~A~k~VVLAAGa~~Tp~LLl~SGIG~~~~L~~~gI~v~~~lp-VG~nl~dH~~~~~~ 426 (567)
+++||++..++. .....+.++||||||+|+||+|||+||||+.+.|..+||.++.++| ||+|||||..+ .+
T Consensus 235 -----r~~gv~~~~~~~~~~~~~~a~~~viL~AGai~Sp~LL~~Sgig~~~~~~~~g~~~v~~~~~vg~nl~dH~~~-~~ 308 (542)
T COG2303 235 -----RAVGVEVEIGDGGTIETAVAAREVVLAAGAINSPKLLLLSGIGPADHLLEHGIDVVGRLPGVGQNLQDHLEI-YV 308 (542)
T ss_pred -----eeEEEEEEeCCCCceEEEecCceEEEeccccCCHHHHHhcCCCchhhhhhcCCeeeecCcchhHHHHhhhhh-hh
Confidence 899999986432 2444455699999999999999999999999999999999999999 99999999998 57
Q ss_pred EEEccCCcccccc-h--hhhhhhhHhhhhCCCCCCCCCccceeEEEeecccCCCCCCCeeeeecCccccCCCCCCCCCCC
Q psy1042 427 VIAFPKTATDRMY-K--KKVSDAFEYKESRCGPLASTGPLQCGVFAKTKLADSLDVPDIQFHHDPMSVRDWITNPVNASS 503 (567)
Q Consensus 427 ~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~Gp~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~d~~~~~~~~~ 503 (567)
.+..+........ . ........|+..++|+.++.. ... +|..+.... ..||+++++.+......
T Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~-~~~-gf~~~~~~~--~~p~~~~~~~~~~~~~~--------- 375 (542)
T COG2303 309 AFEATEPTNDSVLSLFSKLGIGADRYLLTRDGPGATNH-FEG-GFVRSGPAG--EYPDGQYHFAPLPLAIR--------- 375 (542)
T ss_pred heeccCccccccccccccccccceeEEeecCCCccccc-ccc-cccccCccc--cCCCccccccccccccc---------
Confidence 7777665311111 0 111222456667888876422 232 255544332 46788777754322110
Q ss_pred CCCCCCCCCCcEEEEEeccccCCceEEEeeCCCCCCCCCeeeCCCCCChHHHHHHHHH-HHhhcC
Q psy1042 504 TNMSPFAYYDGITVRPILLKPKSRGYIQLNATDPLWGPPLIFPKFFTKKPDLDVFVAG-EFATDV 567 (567)
Q Consensus 504 ~~~~~~~~~~~~~~~~~~~~P~SrG~V~L~s~dp~~~~P~I~~~y~~~~~D~~~~~~~-r~~~~~ 567 (567)
.......+++....++|.|||+|++++.||. ..|.|+++|++++.|++.++++ +..+++
T Consensus 376 ----~~~~~~~~~~~~~~~rp~srg~v~~~~~d~~-~~p~i~~~~~~~~~d~~~~~~~~~~~r~i 435 (542)
T COG2303 376 ----AAGAEHGFTLHVGPMRPKSRGSVTLRSPDPD-NRPVIDPNYLSAEGDRAIFRAGIRLTREI 435 (542)
T ss_pred ----ccccCCccEEeeccCCCccccceecCCCCCc-CCcccCccccCchhHHHHHHHHHHHHHHH
Confidence 1122356778888999999999999999999 9999999999999999999999 988764
No 5
>PLN02785 Protein HOTHEAD
Probab=100.00 E-value=4.4e-51 Score=448.21 Aligned_cols=400 Identities=24% Similarity=0.290 Sum_probs=263.3
Q ss_pred CCCcccEEEECCChhHHHHHHHHHhcCCCeEEEEecCCCCCCccccCCccccccCCCCcCCcccCCCcccccCCCCCcee
Q psy1042 114 DDMTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIEEPFFADVPGLAPLISRSNIDWNYMTMPEPHACKARPNGRCY 193 (567)
Q Consensus 114 ~~~~yDvIVVGsG~aG~~aA~~Lae~~G~~VlVLE~G~~~~~~~~~p~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 193 (567)
...+|||||||||.+||++|.+|++ +.+|||||+|+.......+... ........+|.|.+.+|.. ..++.+.
T Consensus 52 ~~~~yD~IIVG~G~aG~~lA~~Ls~--~~~VLllE~G~~~~~~~~~~~~-~~~~~~~~d~~~~~~~q~~----~~~~~~~ 124 (587)
T PLN02785 52 GDSAYDYIVVGGGTAGCPLAATLSQ--NFSVLLLERGGVPFGNANVSFL-ENFHIGLADTSPTSASQAF----ISTDGVI 124 (587)
T ss_pred ccccCCEEEECcCHHHHHHHHHHhc--CCcEEEEecCCCCCCCchhhhH-HhhCCcccccCCccccccc----cCCCcee
Confidence 3456999999999999999999999 5899999999753111111111 1122345689888888764 4577889
Q ss_pred eeceeEeccccccceeEEecCChhhHHHHHHcCCCCCChhhHHHHHHhhccCCCCcccCCCCCCCCCCCceeeecCCCCC
Q psy1042 194 WARGKVMGGSSTINYMIYARGNAEDYDEWEAMGNEGWGYDEVLEYFKKSEDNEDKEIYHKNPEYHGKGGYQTVEWLPYAD 273 (567)
Q Consensus 194 ~~~g~~lGGsS~~n~~~~~r~~~~d~~~w~~~g~~~w~~~~l~~y~~~~e~~~~~~~~~~~~~~~g~~G~l~~~~~~~~~ 273 (567)
+.+|++|||+|.+|+|+|.|+++.+|+. .+|+|+.+.+||++.|+.... .+...
T Consensus 125 ~~rGr~LGGsS~iN~~~y~Rg~~~d~~~------~GW~~~~~~~~~~~~e~~~~~--------------------~~~~~ 178 (587)
T PLN02785 125 NARARVLGGGTCINAGFYSRASTRFIQK------AGWDAKLVNESYPWVERQIVH--------------------WPKVA 178 (587)
T ss_pred ccccceecchhhhcCeEEEeCCHHHhcc------CCCCcccccchHHHHhccccc--------------------CCCcC
Confidence 9999999999999999999999999963 589999999999999875311 01124
Q ss_pred chHHHHHHHHHhcCCCCCCCCCCC---ceeeeeecccc-CCCcccchhHHhhHHHHhcCCCeEEecceEEEEEEeCCCCC
Q psy1042 274 KNLPVLIKAWKEKGYPERDLNAEN---QIGVMHLQTTT-RHGERLSTNGAFIRPIRKKRKNLTILTEAHVTRIICDKTPN 349 (567)
Q Consensus 274 ~~~~~~~~~~~~~G~~~~~~~~~~---~~g~~~~~~~~-~~g~r~s~~~~~L~~a~~~~~gv~I~~~t~V~~I~~d~~~~ 349 (567)
+....+.+++.++|++. +++.. ..|........ ..|.|.+++. ++ +..+ +.|++|++++.|++|++++.+
T Consensus 179 ~~~~~~~~a~~e~G~~~--~n~~~~d~~~G~~~g~~i~~~~g~R~saa~-l~-~~~~-~~nl~Vl~~a~V~rIl~~~~~- 252 (587)
T PLN02785 179 PWQAALRDSLLEVGVSP--FNGFTYDHVYGTKVGGTIFDEFGRRHTAAE-LL-AAGN-PNKLRVLLHATVQKIVFDTSG- 252 (587)
T ss_pred hHHHHHHHHHHHcCCCc--cCCCCCCCccceeeeEEEeCCCCEEcCHHH-HH-hhcC-CCCeEEEeCCEEEEEEEcCCC-
Confidence 56688999999999974 22211 11111111111 4577887776 44 4555 789999999999999998522
Q ss_pred CCCccEEEEEEEEe-CCEEEEE----EcCcEEEEcCCCCccHHHHHhCCCCCcchhhhcCCcccccCC-cchhhhhccCC
Q psy1042 350 KHKKLVAKSVEFFY-KKKLRRA----RAKKEVISSAGAINSPKILMLSGIGPKDHLTSLNIKTLVDLK-VGHNLQDHLTS 423 (567)
Q Consensus 350 ~~~~~rv~GV~~~~-~g~~~~v----~A~k~VVLAAGa~~Tp~LLl~SGIG~~~~L~~~gI~v~~~lp-VG~nl~dH~~~ 423 (567)
...+|+||++.+ +|..+++ +++|+||||||+|+||+|||+|||||+++|+++||+|++|+| ||+||+||+..
T Consensus 253 --~~~ra~GV~~~~~~g~~~~~~~~~~~~~eVILsAGai~sP~lL~~SGIGp~~~L~~~gIpvv~dlP~VG~NL~DHp~~ 330 (587)
T PLN02785 253 --KRPRATGVIFKDENGNQHQAFLSNNKGSEIILSAGAIGSPQMLLLSGIGPKKELKKHKIPVVLHNEHVGKGMADNPMN 330 (587)
T ss_pred --CCceEEEEEEEECCCceEEEEeecccCceEEecccccCCHHHHHHcCCCCHHHHHHcCCCeeecCCCcccchhhCccc
Confidence 112899999976 4554443 256799999999999999999999999999999999999999 99999999988
Q ss_pred cceEEEccCCcccccchhhhhhhhHhhhhCCCCCCCCCccceeEEEeecccCCCCCCCeeeeecCcc-ccCCC---CCCC
Q psy1042 424 DGIVIAFPKTATDRMYKKKVSDAFEYKESRCGPLASTGPLQCGVFAKTKLADSLDVPDIQFHHDPMS-VRDWI---TNPV 499 (567)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gp~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~-~~~d~---~~~~ 499 (567)
.+.+..+.+... . ....+.....|++.... . ++......-....+.+........ ..... .+..
T Consensus 331 -~i~~~~~~~~~~---~----~~~~~~~~~~g~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (587)
T PLN02785 331 -SIFVPSKAPVEQ---S----LIQTVGITKMGVYIEAS-S---GFGQSPDSIHCHHGIMSAEIGQLSTIPPKQRTPEAIQ 398 (587)
T ss_pred -ceEEEeCCCchh---h----hHhhhhhhccccceecc-c---ccccCchhhhhhccccccccccccccCcccccchhhh
Confidence 577776654211 0 01112222334432110 0 010000000000000000000000 00000 0000
Q ss_pred CCCCCCC-CCCCCCCcEEEEEeccccCCceEEEeeCCCCCCCCCeeeCCCCCChHHHHHHHHH-HHhhcC
Q psy1042 500 NASSTNM-SPFAYYDGITVRPILLKPKSRGYIQLNATDPLWGPPLIFPKFFTKKPDLDVFVAG-EFATDV 567 (567)
Q Consensus 500 ~~~~~~~-~~~~~~~~~~~~~~~~~P~SrG~V~L~s~dp~~~~P~I~~~y~~~~~D~~~~~~~-r~~~~~ 567 (567)
.+-.... .+........+...+++|+|||+|+|+|+||. +.|.|++|||+||.|++.++++ |.+++|
T Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~l~~P~SrG~V~L~ssdp~-~~P~i~~ny~~~p~Dl~~~~~g~r~~~~i 467 (587)
T PLN02785 399 AYIHRKKNLPHEAFNGGFILEKIAGPISTGHLSLINTNVD-DNPSVTFNYFKHPQDLQRCVYGIRTIEKI 467 (587)
T ss_pred hhccCcccccccccccceEEEEecCCCcceEEEecCCCCC-cCCccccccCCCHHHHHHHHHHHHHHHHH
Confidence 0000000 00000011134456789999999999999999 9999999999999999999999 999874
No 6
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=100.00 E-value=6.8e-51 Score=415.39 Aligned_cols=288 Identities=41% Similarity=0.638 Sum_probs=230.1
Q ss_pred ccEEEECCChhHHHHHHHHHhcCCCeEEEEecCCCCCCccccC-CccccccCCCCcCCcccCCCcccccCCCCCceeeec
Q psy1042 118 FDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIEEPFFADVP-GLAPLISRSNIDWNYMTMPEPHACKARPNGRCYWAR 196 (567)
Q Consensus 118 yDvIVVGsG~aG~~aA~~Lae~~G~~VlVLE~G~~~~~~~~~p-~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 196 (567)
|||||||||++|+++|.+||++++.+|||||||+........+ ..........+.|.+.+.++.. +.++.+.|++
T Consensus 1 yD~iIVGsG~~G~v~A~rLs~~~~~~VlvlEaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~ 76 (296)
T PF00732_consen 1 YDYIIVGSGAGGSVVASRLSEAGNKKVLVLEAGPRYPPEDSTPPSSFYQDFDSEYDWGYYSGPQPF----LNGRTINWPR 76 (296)
T ss_dssp EEEEEES-SHHHHHHHHHHTTSTTS-EEEEESSBSCTTSGHHGGGGGGGCTTTTTBBGEEECEEEC----TTTTSEEEEE
T ss_pred CCEEEECcCHHHHHHHHHHhhCCCCcEEEEEccccCccccchhhhccccccCcccccccccccccc----cccceeeeec
Confidence 8999999999999999999999447999999999875433111 1122223455677777766654 5677888999
Q ss_pred eeEeccccccceeEEecCChhhHHHHHHc-CCCCCChhhHHHHHHhhccCCCCcccCCCCCCCCCCCceee-ecCCCCCc
Q psy1042 197 GKVMGGSSTINYMIYARGNAEDYDEWEAM-GNEGWGYDEVLEYFKKSEDNEDKEIYHKNPEYHGKGGYQTV-EWLPYADK 274 (567)
Q Consensus 197 g~~lGGsS~~n~~~~~r~~~~d~~~w~~~-g~~~w~~~~l~~y~~~~e~~~~~~~~~~~~~~~g~~G~l~~-~~~~~~~~ 274 (567)
|++|||+|.+|++++.|+.+.||+.|... |...|+|+++.+||+++|....+. ...++..+++.+ .......+
T Consensus 77 G~~lGGsS~in~~~~~R~~~~df~~w~~~~g~~~w~~~~l~~~~~~~e~~~~~~-----~~~~g~~~~~~v~~~~~~~~~ 151 (296)
T PF00732_consen 77 GKGLGGSSAINGGVYFRPSPSDFDEWAREFGADGWSWDDLEPYYDKAETFLGPS-----SDLHGVDGPLPVSSSPPYPSP 151 (296)
T ss_dssp B-STTGGGGTS--BE-B--HHHHHHHHHTTTCTTGSHHHHHHHHHHHEEEHTTB-----GGGSCBSSSEEEHHHCSCHCT
T ss_pred ceecCCcccccccccccCCcccchhhhhcccccccchhhHHHHHHHHHhhcccc-----ccccccccccccccccCCCCH
Confidence 99999999999999999999999999987 777899999999999999887763 236777888888 44555577
Q ss_pred hHHHHHHHHHhcCCCC-CCCCCCCceeeeeeccccCCCcccchhHHhhHHHHhcCCCeEEecceEEEEEEeCCCCCCCCc
Q psy1042 275 NLPVLIKAWKEKGYPE-RDLNAENQIGVMHLQTTTRHGERLSTNGAFIRPIRKKRKNLTILTEAHVTRIICDKTPNKHKK 353 (567)
Q Consensus 275 ~~~~~~~~~~~~G~~~-~~~~~~~~~g~~~~~~~~~~g~r~s~~~~~L~~a~~~~~gv~I~~~t~V~~I~~d~~~~~~~~ 353 (567)
....+.++++++|++. .+.+.+..+|++.....|..|.|+++..+||.++.+ ++|++|+++|+|++|+++.+++
T Consensus 152 ~~~~~~~a~~~~G~~~~~~~~~~~~~g~~~~~~~~~~g~r~s~~~~~L~~a~~-~~n~~l~~~~~V~~i~~~~~~~---- 226 (296)
T PF00732_consen 152 MNQALMDAAEELGIPVPQDFNGCDPCGFCMTGFNCPNGARSSAATTYLPPALK-RPNLTLLTNARVTRIIFDGDGG---- 226 (296)
T ss_dssp HHHHHHHHHHHTTHHBCSCTTSSTCSEEEECEECECTTCBBHHHHHHHHHHTT-TTTEEEEESEEEEEEEEETTST----
T ss_pred HHHHHHHHHHHcCCccccccccccccccccccccccchhceehhhcccchhhc-cCCccEEcCcEEEEEeeecccc----
Confidence 7789999999999984 577777888888776678999999999999999998 8899999999999999975556
Q ss_pred cEEEEEEEEeC-CE--EEEEEcCcEEEEcCCCCccHHHHHhCCCCCcchhhhcCCcccccCCcchhhhhcc
Q psy1042 354 LVAKSVEFFYK-KK--LRRARAKKEVISSAGAINSPKILMLSGIGPKDHLTSLNIKTLVDLKVGHNLQDHL 421 (567)
Q Consensus 354 ~rv~GV~~~~~-g~--~~~v~A~k~VVLAAGa~~Tp~LLl~SGIG~~~~L~~~gI~v~~~lpVG~nl~dH~ 421 (567)
+|+||++.+. +. .+.+.+ |+||||||+++||+||++||||+..+|+++||+++.++|||+|||||+
T Consensus 227 -~a~gV~~~~~~~~~~~~~~~a-k~VIlaAGai~Tp~LLl~SGiG~~~~L~~~gi~~~~~lpVG~nl~dH~ 295 (296)
T PF00732_consen 227 -RATGVEYVDNDGGVQRRIVAA-KEVILAAGAIGTPRLLLRSGIGPKDHLDALGIPVVVDLPVGRNLQDHP 295 (296)
T ss_dssp -EEEEEEEEETTTSEEEEEEEE-EEEEE-SHHHHHHHHHHHTTEE-HHHHHHTTHHHSEE-TTTECEB--E
T ss_pred -ceeeeeeeecCCcceeeeccc-eeEEeccCCCCChhhhcccccccHHHHHHcCCCceeeCcchhchhccc
Confidence 9999999874 33 345555 689999999999999999999999999999999999999999999997
No 7
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=99.96 E-value=6.3e-28 Score=260.49 Aligned_cols=273 Identities=19% Similarity=0.177 Sum_probs=169.8
Q ss_pred ccEEEECCChhHHHHHHHHHhcCCCeEEEEecCCCCCCcc----ccCCc-----c----ccccC----------------
Q psy1042 118 FDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIEEPFFA----DVPGL-----A----PLISR---------------- 168 (567)
Q Consensus 118 yDvIVVGsG~aG~~aA~~Lae~~G~~VlVLE~G~~~~~~~----~~p~~-----~----~~~~~---------------- 168 (567)
|||||||+|++|+++|+.|+++ |++|+|||+|....... ..... . ..+.+
T Consensus 1 ~dv~ivg~Gp~G~~~a~~l~~~-g~~v~~~e~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (544)
T TIGR02462 1 YDVFIAGSGPIGCTYARLCVDA-GLKVAMVEIGAADSFLKIGAHKKNEIEYQKDIDKFVNVIKGALQSVSVPVSNLVIPT 79 (544)
T ss_pred CcEEEECCchHHHHHHHHHHHC-CCeEEEEeccCccCCCcccccccccccccccHHHHHHHHhhhccccccccccCCcCC
Confidence 7999999999999999999999 99999999997653110 00000 0 00000
Q ss_pred -CCCcCCcc---------cCCCcccccCCCCCcee-eeceeEeccccccceeEEecCChhhHHHHHHcCCCCC--ChhhH
Q psy1042 169 -SNIDWNYM---------TMPEPHACKARPNGRCY-WARGKVMGGSSTINYMIYARGNAEDYDEWEAMGNEGW--GYDEV 235 (567)
Q Consensus 169 -~~~~~~~~---------~~p~~~~~~~~~~~~~~-~~~g~~lGGsS~~n~~~~~r~~~~d~~~w~~~g~~~w--~~~~l 235 (567)
....|... ..|++.. ...+. ..+.+.|||+|.+|++.++|+++.+. .| -..+| +|++|
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~ar~R~vGGsS~hW~g~~~R~~p~~r-~g---~~~dWPI~y~eL 150 (544)
T TIGR02462 80 LDPTAWSASIESFFVSNGKNPEQDP-----FRNLSGEAVTRGVGGMSTHWTCATPRFHREER-PK---LSDDAAEDDAEW 150 (544)
T ss_pred CCccccccCCCcceecCCCCcccCc-----hhccChhheeeccCchhhhcCcccCCCCHHhc-cC---CCCCCCCCHHHH
Confidence 00111110 0111110 01111 23568999999999999999999642 12 13588 99999
Q ss_pred HHHHHhhccCCCCcccCCCCCCCCCCCceeeecCCC-CCchHHHHHHHHHhcCC-CCC-CCCCCCceeeeeeccccCCCc
Q psy1042 236 LEYFKKSEDNEDKEIYHKNPEYHGKGGYQTVEWLPY-ADKNLPVLIKAWKEKGY-PER-DLNAENQIGVMHLQTTTRHGE 312 (567)
Q Consensus 236 ~~y~~~~e~~~~~~~~~~~~~~~g~~G~l~~~~~~~-~~~~~~~~~~~~~~~G~-~~~-~~~~~~~~g~~~~~~~~~~g~ 312 (567)
.|||.++|+++++.. ... .++. .....+.+.+.+. |. .+. ...+ +. ...|..+.
T Consensus 151 ~PyY~~Ae~~~gv~g------------~~~--~~~~~~~~~~~~~~~~~~--g~~~~~~~PlA---~~----~~~c~~~a 207 (544)
T TIGR02462 151 DRLYTKAESLIGTST------------DQF--DESIRHNLVLRKLQDEYK--GQRDFQPLPLA---CH----RRTDPTYV 207 (544)
T ss_pred HHHHHHHHHHhCCCC------------CcC--CCcccchhHHHHHHHHhc--cccccccCchh---hh----ccCCCccc
Confidence 999999999987632 000 0001 0111122333222 32 110 1111 11 11344556
Q ss_pred ccchhHHhhHHHH----hcCCCeEEecceEEEEEEeCCCC-CCCCccEEEEEEEEe--CCEEEEEEcCcEEEEcCCCCcc
Q psy1042 313 RLSTNGAFIRPIR----KKRKNLTILTEAHVTRIICDKTP-NKHKKLVAKSVEFFY--KKKLRRARAKKEVISSAGAINS 385 (567)
Q Consensus 313 r~s~~~~~L~~a~----~~~~gv~I~~~t~V~~I~~d~~~-~~~~~~rv~GV~~~~--~g~~~~v~A~k~VVLAAGa~~T 385 (567)
++++..+.+..+. + ..|++|++++.|++|++++++ + +|+||++.+ +++.++++|+ .||||||+++|
T Consensus 208 k~s~~~t~~~~~~~~~~~-~~n~~l~~~a~v~~i~~d~~~~~-----~v~~v~~~d~~~g~~~~v~A~-~vVLAagaIet 280 (544)
T TIGR02462 208 EWHSADTVFDLQPNDDAP-SERFTLLTNHRCTRLVRNETNES-----EIEAALVRDLLSGDRFEIKAD-VYVLACGAVHN 280 (544)
T ss_pred eecCCccchhhhhhhhcc-CCCEEEEcCCEEEEEEeCCCCCc-----eeEEEEEEECCCCcEEEEECC-EEEEccCchhh
Confidence 6665444454333 3 578999999999999998644 4 799999986 5888899996 79999999999
Q ss_pred HHHHHhCCCCCcchhhhcCCcccccCC-cchhhhhccCCcceEEEccCC
Q psy1042 386 PKILMLSGIGPKDHLTSLNIKTLVDLK-VGHNLQDHLTSDGIVIAFPKT 433 (567)
Q Consensus 386 p~LLl~SGIG~~~~L~~~gI~v~~~lp-VG~nl~dH~~~~~~~~~~~~~ 433 (567)
|+||++|+++.... ..|+..-...+ ||||||||+.. .+.+.++++
T Consensus 281 pRLLL~S~~~~~~~--p~gl~Nss~~g~VGRnlmdh~~~-~~~~~~~~~ 326 (544)
T TIGR02462 281 PQILVNSGFGQLGR--PDPTNPPPLLPSLGRYITEQSMT-FCQIVLSTE 326 (544)
T ss_pred HHHHHhCCCCCCcC--CCCcCCCCCCCCCCcchhcCCCc-cEEEEecch
Confidence 99999999985321 11221111125 99999999987 456665544
No 8
>PRK07121 hypothetical protein; Validated
Probab=99.58 E-value=1.2e-13 Score=150.80 Aligned_cols=64 Identities=20% Similarity=0.196 Sum_probs=50.4
Q ss_pred hhHHHHhcCCCeEEecceEEEEEEeCCCCCCCCccEEEEEEEEeCCEEEEEEcCcEEEEcCCCCccHHHHH
Q psy1042 320 FIRPIRKKRKNLTILTEAHVTRIICDKTPNKHKKLVAKSVEFFYKKKLRRARAKKEVISSAGAINSPKILM 390 (567)
Q Consensus 320 ~L~~a~~~~~gv~I~~~t~V~~I~~d~~~~~~~~~rv~GV~~~~~g~~~~v~A~k~VVLAAGa~~Tp~LLl 390 (567)
.|...++ +.|++|+++++|++|+.+++ + +|+||++..+++..+|+|+|.||||+|++...+-|+
T Consensus 182 ~L~~~~~-~~gv~i~~~~~v~~l~~~~~-g-----~v~Gv~~~~~~~~~~i~a~k~VVlAtGg~~~N~em~ 245 (492)
T PRK07121 182 PLAKRAA-ALGVQIRYDTRATRLIVDDD-G-----RVVGVEARRYGETVAIRARKGVVLAAGGFAMNREMV 245 (492)
T ss_pred HHHHHHH-hCCCEEEeCCEEEEEEECCC-C-----CEEEEEEEeCCcEEEEEeCCEEEECCCCcCcCHHHH
Confidence 3444455 58999999999999998743 4 799999987777778999568999999998644443
No 9
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.57 E-value=4.3e-14 Score=156.72 Aligned_cols=64 Identities=17% Similarity=0.190 Sum_probs=52.2
Q ss_pred HhhHHHHhcCCCeEEecceEEEEEEeCCCCCCCCccEEEEEEEEeCCEEEEEEcCcEEEEcCCCCccHHHH
Q psy1042 319 AFIRPIRKKRKNLTILTEAHVTRIICDKTPNKHKKLVAKSVEFFYKKKLRRARAKKEVISSAGAINSPKIL 389 (567)
Q Consensus 319 ~~L~~a~~~~~gv~I~~~t~V~~I~~d~~~~~~~~~rv~GV~~~~~g~~~~v~A~k~VVLAAGa~~Tp~LL 389 (567)
..|..+++ ..|++|+++|+|++|+.|++ + +|+||.+..+++.++|+|+|.||||||+|....-|
T Consensus 217 ~~l~~~~~-~~gv~i~~~~~~~~Li~d~~-g-----~V~Gv~~~~~~~~~~i~a~~aVilAtGGf~~N~em 280 (584)
T PRK12835 217 ARLRLALK-DAGVPLWLDSPMTELITDPD-G-----AVVGAVVEREGRTLRIGARRGVILATGGFDHDMDW 280 (584)
T ss_pred HHHHHHHH-hCCceEEeCCEEEEEEECCC-C-----cEEEEEEEeCCcEEEEEeceeEEEecCcccCCHHH
Confidence 34555556 68999999999999999753 4 89999998878888899977899999999974433
No 10
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.56 E-value=6.3e-14 Score=154.52 Aligned_cols=61 Identities=16% Similarity=0.166 Sum_probs=49.5
Q ss_pred hHHHHhcCCCeEEecceEEEEEEeCCCCCCCCccEEEEEEEEeCCEEEEEEcCcEEEEcCCCCccHHHH
Q psy1042 321 IRPIRKKRKNLTILTEAHVTRIICDKTPNKHKKLVAKSVEFFYKKKLRRARAKKEVISSAGAINSPKIL 389 (567)
Q Consensus 321 L~~a~~~~~gv~I~~~t~V~~I~~d~~~~~~~~~rv~GV~~~~~g~~~~v~A~k~VVLAAGa~~Tp~LL 389 (567)
|...++ +.|++|+++++|++|+.+ ++ +|+||.+..++....|.|+|.||||+|+|....=|
T Consensus 223 L~~~~~-~~Gv~i~~~t~v~~Li~~--~g-----~V~GV~~~~~g~~~~i~a~kaVILAtGGf~~n~em 283 (564)
T PRK12845 223 LFAGVL-RAGIPIWTETSLVRLTDD--GG-----RVTGAVVDHRGREVTVTARRGVVLAAGGFDHDMEM 283 (564)
T ss_pred HHHHHH-HCCCEEEecCEeeEEEec--CC-----EEEEEEEEECCcEEEEEcCCEEEEecCCccccHHH
Confidence 444444 589999999999999975 35 89999888777777899988999999999976533
No 11
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=99.54 E-value=1.3e-13 Score=151.13 Aligned_cols=61 Identities=15% Similarity=0.238 Sum_probs=49.6
Q ss_pred hhHHHHhcCCCeEEecceEEEEEEeCCCCCCCCccEEEEEEEEeCCEEEEEEcCcEEEEcCCCCccHHH
Q psy1042 320 FIRPIRKKRKNLTILTEAHVTRIICDKTPNKHKKLVAKSVEFFYKKKLRRARAKKEVISSAGAINSPKI 388 (567)
Q Consensus 320 ~L~~a~~~~~gv~I~~~t~V~~I~~d~~~~~~~~~rv~GV~~~~~g~~~~v~A~k~VVLAAGa~~Tp~L 388 (567)
++..+.+ +.|++|+++++|++|+.+ ++ +|+||++..++...+|+|+|.||||||+|+..+-
T Consensus 179 l~~~~~~-~~gv~i~~~t~~~~Li~~--~g-----~v~Gv~~~~~g~~~~i~A~k~VIlAtGG~~~n~~ 239 (513)
T PRK12837 179 FLAALAR-FPNARLRLNTPLVELVVE--DG-----RVVGAVVERGGERRRVRARRGVLLAAGGFEQNDD 239 (513)
T ss_pred HHHHHHh-CCCCEEEeCCEEEEEEec--CC-----EEEEEEEEECCcEEEEEeCceEEEeCCCccCCHH
Confidence 4444444 569999999999999986 45 8999998877888899998789999999975433
No 12
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.53 E-value=1.2e-13 Score=152.71 Aligned_cols=63 Identities=13% Similarity=0.149 Sum_probs=51.2
Q ss_pred hhHHHHhcCCCeEEecceEEEEEEeCCCCCCCCccEEEEEEEEeCCEEEEEEcCcEEEEcCCCCccHHHHH
Q psy1042 320 FIRPIRKKRKNLTILTEAHVTRIICDKTPNKHKKLVAKSVEFFYKKKLRRARAKKEVISSAGAINSPKILM 390 (567)
Q Consensus 320 ~L~~a~~~~~gv~I~~~t~V~~I~~d~~~~~~~~~rv~GV~~~~~g~~~~v~A~k~VVLAAGa~~Tp~LLl 390 (567)
.|...++ +.|++|+++++|++|+.+ ++ +|+||++..+++.+.|+|+|.||||||+|....=|+
T Consensus 213 ~l~~~~~-~~gv~i~~~~~v~~Li~~--~g-----~v~Gv~~~~~g~~~~i~A~~aVIlAtGG~~~N~em~ 275 (557)
T PRK12844 213 RMLEAAL-AAGVPLWTNTPLTELIVE--DG-----RVVGVVVVRDGREVLIRARRGVLLASGGFGHNAEMR 275 (557)
T ss_pred HHHHHHH-hCCCEEEeCCEEEEEEEe--CC-----EEEEEEEEECCeEEEEEecceEEEecCCccCCHHHH
Confidence 3444445 689999999999999987 45 899999987788888999778999999999854443
No 13
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=99.52 E-value=3.8e-13 Score=143.96 Aligned_cols=59 Identities=20% Similarity=0.273 Sum_probs=45.5
Q ss_pred hHHHHhcCCCeEEecceEEEEEEeCCCCCCCCccEEEEEEEE--eCCEEEEEEcCcEEEEcCCCCccHHHH
Q psy1042 321 IRPIRKKRKNLTILTEAHVTRIICDKTPNKHKKLVAKSVEFF--YKKKLRRARAKKEVISSAGAINSPKIL 389 (567)
Q Consensus 321 L~~a~~~~~gv~I~~~t~V~~I~~d~~~~~~~~~rv~GV~~~--~~g~~~~v~A~k~VVLAAGa~~Tp~LL 389 (567)
|...++ +.+++|+++++|++|+.+ ++ +|+||++. .+++..+|+|+ .||||+|++.. .++
T Consensus 147 l~~~~~-~~gv~i~~~~~~~~Li~e--~g-----~V~Gv~~~~~~~g~~~~i~A~-aVIlAtGG~~~-~~~ 207 (417)
T PF00890_consen 147 LAKAAE-EAGVDIRFNTRVTDLITE--DG-----RVTGVVAENPADGEFVRIKAK-AVILATGGFGG-ELL 207 (417)
T ss_dssp HHHHHH-HTTEEEEESEEEEEEEEE--TT-----EEEEEEEEETTTCEEEEEEES-EEEE----BGG-HHH
T ss_pred HHHHHh-hcCeeeeccceeeeEEEe--CC-----ceeEEEEEECCCCeEEEEeee-EEEeccCcccc-ccc
Confidence 333344 478999999999999997 45 99999999 67888999996 89999999998 444
No 14
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=99.50 E-value=9.9e-13 Score=142.83 Aligned_cols=66 Identities=23% Similarity=0.181 Sum_probs=51.5
Q ss_pred hHHHHhcCCCeEEecceEEEEEEeCCCCCCCCccEEEEEEEE-eCCEEEEEEcCcEEEEcCCCCccHHHHHhCCCC
Q psy1042 321 IRPIRKKRKNLTILTEAHVTRIICDKTPNKHKKLVAKSVEFF-YKKKLRRARAKKEVISSAGAINSPKILMLSGIG 395 (567)
Q Consensus 321 L~~a~~~~~gv~I~~~t~V~~I~~d~~~~~~~~~rv~GV~~~-~~g~~~~v~A~k~VVLAAGa~~Tp~LLl~SGIG 395 (567)
|...++ +.|++|+++++|++|+.+ ++ +|+||.+. .+++...++|+ .||||+|++..++.|+..-.+
T Consensus 137 l~~~~~-~~gv~i~~~t~v~~l~~~--~g-----~v~gv~~~~~~g~~~~i~a~-~VIlAtGg~~~n~~~~~~~~~ 203 (466)
T PRK08274 137 LYRSAE-RLGVEIRYDAPVTALELD--DG-----RFVGARAGSAAGGAERIRAK-AVVLAAGGFESNREWLREAWG 203 (466)
T ss_pred HHHHHH-HCCCEEEcCCEEEEEEec--CC-----eEEEEEEEccCCceEEEECC-EEEECCCCCCCCHHHHHhhcC
Confidence 433444 589999999999999986 35 89999885 45556678994 899999999988877766444
No 15
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=99.49 E-value=1.8e-12 Score=141.93 Aligned_cols=58 Identities=17% Similarity=0.289 Sum_probs=45.0
Q ss_pred hHHHHhcCCCeEEecceEEEEEEeCCCCCCCCccEEEEEEEEeC-CEEEEEEcCcEEEEcCCCCccHH
Q psy1042 321 IRPIRKKRKNLTILTEAHVTRIICDKTPNKHKKLVAKSVEFFYK-KKLRRARAKKEVISSAGAINSPK 387 (567)
Q Consensus 321 L~~a~~~~~gv~I~~~t~V~~I~~d~~~~~~~~~rv~GV~~~~~-g~~~~v~A~k~VVLAAGa~~Tp~ 387 (567)
|...+. +.+++|++++.|++|+.+ ++ +|+||.+... ++..++.|+ .||||+|++....
T Consensus 196 L~~~~~-~~gv~i~~~t~v~~l~~~--~g-----~V~Gv~~~~~~g~~~~i~a~-~VVlAtGG~~~n~ 254 (506)
T PRK06481 196 LLKNVQ-ERKIPLFVNADVTKITEK--DG-----KVTGVKVKINGKETKTISSK-AVVVTTGGFGANK 254 (506)
T ss_pred HHHHHH-HcCCeEEeCCeeEEEEec--CC-----EEEEEEEEeCCCeEEEEecC-eEEEeCCCcccCH
Confidence 333444 579999999999999865 35 8999988753 456689995 8999999988653
No 16
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=99.43 E-value=1.5e-12 Score=154.84 Aligned_cols=58 Identities=19% Similarity=0.332 Sum_probs=44.8
Q ss_pred CCeEEecceEEEEEEeCCCC--CCCCccEEEEEEEEe----CCEEEEEEcCcEEEEcCCCCccHH
Q psy1042 329 KNLTILTEAHVTRIICDKTP--NKHKKLVAKSVEFFY----KKKLRRARAKKEVISSAGAINSPK 387 (567)
Q Consensus 329 ~gv~I~~~t~V~~I~~d~~~--~~~~~~rv~GV~~~~----~g~~~~v~A~k~VVLAAGa~~Tp~ 387 (567)
.|++|+++++|++|+.++++ .+....+|+||++.+ +|+.+.|.| |.||||||+|....
T Consensus 560 ~gv~i~~~t~~~~LI~d~~~~~~G~~~~~V~Gv~~~~~~~~~g~~~~i~A-kaVILATGGf~~N~ 623 (1167)
T PTZ00306 560 GRVTIMTETTVTSLLSESSARPDGVREIRVTGVRYKQASDASGQVMDLLA-DAVILATGGFSNDH 623 (1167)
T ss_pred CCcEEEECCEEEEEEecCCcccCCCccceEEEEEEEecccCCCcEEEEEe-ceEEEecCCcccCc
Confidence 58999999999999987421 000012799999975 577788999 58999999999754
No 17
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=99.43 E-value=5.2e-12 Score=139.68 Aligned_cols=35 Identities=43% Similarity=0.592 Sum_probs=33.3
Q ss_pred CcccEEEECCChhHHHHHHHHHhcCCCeEEEEecCC
Q psy1042 116 MTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGI 151 (567)
Q Consensus 116 ~~yDvIVVGsG~aG~~aA~~Lae~~G~~VlVLE~G~ 151 (567)
.++||||||+|.+|++||..++++ |.+|+||||++
T Consensus 3 ~~~DVvVVG~G~AGl~AAl~Aa~~-G~~VivlEK~~ 37 (549)
T PRK12834 3 MDADVIVVGAGLAGLVAAAELADA-GKRVLLLDQEN 37 (549)
T ss_pred ccCCEEEECcCHHHHHHHHHHHHC-CCeEEEEeCCC
Confidence 579999999999999999999999 99999999986
No 18
>PRK06175 L-aspartate oxidase; Provisional
Probab=99.42 E-value=5.3e-12 Score=135.46 Aligned_cols=57 Identities=25% Similarity=0.364 Sum_probs=44.3
Q ss_pred hhHHHHhcCCCeEEecceEEEEEEeCCCCCCCCccEEEEEEEEeCCEEEEEEcCcEEEEcCCCCcc
Q psy1042 320 FIRPIRKKRKNLTILTEAHVTRIICDKTPNKHKKLVAKSVEFFYKKKLRRARAKKEVISSAGAINS 385 (567)
Q Consensus 320 ~L~~a~~~~~gv~I~~~t~V~~I~~d~~~~~~~~~rv~GV~~~~~g~~~~v~A~k~VVLAAGa~~T 385 (567)
++..+.+ +.|++|+++|.|++|+.+ ++ +|+||.+..++..+++.|+ .||||+|++..
T Consensus 134 L~~~~~~-~~gV~i~~~t~v~~Li~~--~~-----~v~Gv~~~~~g~~~~i~Ak-~VILAtGG~~~ 190 (433)
T PRK06175 134 LLKKVKK-RKNITIIENCYLVDIIEN--DN-----TCIGAICLKDNKQINIYSK-VTILATGGIGG 190 (433)
T ss_pred HHHHHHh-cCCCEEEECcEeeeeEec--CC-----EEEEEEEEECCcEEEEEcC-eEEEccCcccc
Confidence 3333444 569999999999999876 34 8999887666666689994 79999999864
No 19
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=99.42 E-value=7.1e-12 Score=139.98 Aligned_cols=52 Identities=21% Similarity=0.293 Sum_probs=43.6
Q ss_pred CCCeEEecceEEEEEEeCCCCCCCCccEEEEEEEEe--CCEEEEEEcCcEEEEcCCCCccH
Q psy1042 328 RKNLTILTEAHVTRIICDKTPNKHKKLVAKSVEFFY--KKKLRRARAKKEVISSAGAINSP 386 (567)
Q Consensus 328 ~~gv~I~~~t~V~~I~~d~~~~~~~~~rv~GV~~~~--~g~~~~v~A~k~VVLAAGa~~Tp 386 (567)
+.|++|+.++.|++|+.++ ++ +|+||.+.+ +|+...|.| |.||||+|++...
T Consensus 199 ~~gv~i~~~~~~~~Li~~~-~g-----~v~Gv~~~~~~~g~~~~i~A-kaVILATGG~g~~ 252 (635)
T PLN00128 199 KHNTQFFVEYFALDLIMDS-DG-----ACQGVIALNMEDGTLHRFRA-HSTILATGGYGRA 252 (635)
T ss_pred hCCCEEEEeeEEEEEEEcC-CC-----EEEEEEEEEcCCCeEEEEEc-CeEEECCCCCccc
Confidence 4799999999999999864 34 899998864 677888999 4899999999854
No 20
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.42 E-value=5.7e-12 Score=139.42 Aligned_cols=64 Identities=16% Similarity=0.177 Sum_probs=51.9
Q ss_pred hhHHHHhcCCCeEEecceEEEEEEeCCCCCCCCccEEEEEEEEeCCEEEEEEcCcEEEEcCCCCccHHHHHh
Q psy1042 320 FIRPIRKKRKNLTILTEAHVTRIICDKTPNKHKKLVAKSVEFFYKKKLRRARAKKEVISSAGAINSPKILML 391 (567)
Q Consensus 320 ~L~~a~~~~~gv~I~~~t~V~~I~~d~~~~~~~~~rv~GV~~~~~g~~~~v~A~k~VVLAAGa~~Tp~LLl~ 391 (567)
.|...++ +.|++|+++++|++|+.+ ++ +|+||++..+++..+|.|++.||||||+|...+-|+.
T Consensus 213 ~L~~~~~-~~gv~v~~~t~v~~l~~~--~g-----~v~Gv~~~~~g~~~~i~A~~~VIlAtGG~~~n~~m~~ 276 (557)
T PRK07843 213 GLRIGLQ-RAGVPVLLNTPLTDLYVE--DG-----RVTGVHAAESGEPQLIRARRGVILASGGFEHNEQMRA 276 (557)
T ss_pred HHHHHHH-cCCCEEEeCCEEEEEEEe--CC-----EEEEEEEEeCCcEEEEEeceeEEEccCCcCcCHHHHH
Confidence 3444555 689999999999999986 45 8999998777777889997689999999998665544
No 21
>PLN02815 L-aspartate oxidase
Probab=99.41 E-value=4.8e-12 Score=140.13 Aligned_cols=54 Identities=11% Similarity=0.233 Sum_probs=42.7
Q ss_pred CCCeEEecceEEEEEEeCCCCCCCCccEEEEEEEEe--CCEEEEEEcCcEEEEcCCCCcc
Q psy1042 328 RKNLTILTEAHVTRIICDKTPNKHKKLVAKSVEFFY--KKKLRRARAKKEVISSAGAINS 385 (567)
Q Consensus 328 ~~gv~I~~~t~V~~I~~d~~~~~~~~~rv~GV~~~~--~g~~~~v~A~k~VVLAAGa~~T 385 (567)
..|++|++++.|++|+.+++++ ..+|+||.+.+ +|....+.| |.||||||++..
T Consensus 168 ~~~i~i~~~~~~~~Li~~~~g~---~~~v~Gv~~~~~~~g~~~~i~A-kaVILATGG~g~ 223 (594)
T PLN02815 168 DPNITFFEHHFAIDLLTSQDGG---SIVCHGADVLDTRTGEVVRFIS-KVTLLASGGAGH 223 (594)
T ss_pred cCCCEEEeceEhheeeeecCCC---ccEEEEEEEEEcCCCeEEEEEe-ceEEEcCCccee
Confidence 4699999999999999864332 11489998853 577788999 589999999974
No 22
>PRK07395 L-aspartate oxidase; Provisional
Probab=99.41 E-value=5.1e-12 Score=139.25 Aligned_cols=52 Identities=19% Similarity=0.355 Sum_probs=43.6
Q ss_pred CCCeEEecceEEEEEEeCCCCCCCCccEEEEEEEEeCCEEEEEEcCcEEEEcCCCCcc
Q psy1042 328 RKNLTILTEAHVTRIICDKTPNKHKKLVAKSVEFFYKKKLRRARAKKEVISSAGAINS 385 (567)
Q Consensus 328 ~~gv~I~~~t~V~~I~~d~~~~~~~~~rv~GV~~~~~g~~~~v~A~k~VVLAAGa~~T 385 (567)
+.|++|++++.|++|+.+++++ +|+||.+..++....+.| |.||||||++..
T Consensus 147 ~~gi~i~~~~~v~~Li~~~~~g-----~v~Gv~~~~~g~~~~i~A-kaVILATGG~~~ 198 (553)
T PRK07395 147 RPNIEIISQALALSLWLEPETG-----RCQGISLLYQGQITWLRA-GAVILATGGGGQ 198 (553)
T ss_pred cCCcEEEECcChhhheecCCCC-----EEEEEEEEECCeEEEEEc-CEEEEcCCCCcc
Confidence 4699999999999999874335 899999887777778899 589999999753
No 23
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.40 E-value=7e-12 Score=138.87 Aligned_cols=55 Identities=11% Similarity=0.084 Sum_probs=44.6
Q ss_pred hHHHHhcCCCeEEecceEEEEEEeCCCCCCCCccEEEEEEEEe--CCEEEEEEcCcEEEEcCCCCc
Q psy1042 321 IRPIRKKRKNLTILTEAHVTRIICDKTPNKHKKLVAKSVEFFY--KKKLRRARAKKEVISSAGAIN 384 (567)
Q Consensus 321 L~~a~~~~~gv~I~~~t~V~~I~~d~~~~~~~~~rv~GV~~~~--~g~~~~v~A~k~VVLAAGa~~ 384 (567)
|...+. +.|++|++++.|++|+.+ ++ +|+||.+.+ +++.+.+.| |.||||||++.
T Consensus 142 L~~~~~-~~gv~i~~~~~~~~Li~~--~g-----~v~Gv~~~~~~~g~~~~i~A-kaVVLATGG~~ 198 (566)
T PRK06452 142 LFERTS-GLNVDFYNEWFSLDLVTD--NK-----KVVGIVAMQMKTLTPFFFKT-KAVVLATGGMG 198 (566)
T ss_pred HHHHHH-hCCCEEEeCcEEEEEEEE--CC-----EEEEEEEEECCCCeEEEEEe-CeEEECCCccc
Confidence 333344 469999999999999986 45 899999875 566778999 58999999997
No 24
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.39 E-value=8.1e-12 Score=138.77 Aligned_cols=57 Identities=9% Similarity=0.138 Sum_probs=45.6
Q ss_pred hHHHHhcCCCeEEecceEEEEEEeCCCCCCCCccEEEEEEEEe--CCEEEEEEcCcEEEEcCCCCcc
Q psy1042 321 IRPIRKKRKNLTILTEAHVTRIICDKTPNKHKKLVAKSVEFFY--KKKLRRARAKKEVISSAGAINS 385 (567)
Q Consensus 321 L~~a~~~~~gv~I~~~t~V~~I~~d~~~~~~~~~rv~GV~~~~--~g~~~~v~A~k~VVLAAGa~~T 385 (567)
|..... +.+++|++++.|++|+.++ ++ +|+||.+.+ +|+...++| |.||||||++..
T Consensus 149 L~~~~~-~~gi~i~~~~~~~~Li~~~-~g-----~v~Gv~~~~~~~g~~~~i~A-kaVILATGG~~~ 207 (588)
T PRK08958 149 LYQQNL-KNHTTIFSEWYALDLVKNQ-DG-----AVVGCTAICIETGEVVYFKA-RATVLATGGAGR 207 (588)
T ss_pred HHHHhh-hcCCEEEeCcEEEEEEECC-CC-----EEEEEEEEEcCCCcEEEEEc-CeEEECCCCccc
Confidence 443344 5799999999999999864 34 899999853 677788999 589999999975
No 25
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.39 E-value=1.1e-11 Score=138.98 Aligned_cols=53 Identities=11% Similarity=0.170 Sum_probs=44.4
Q ss_pred HHhcCCCeEEecceEEEEEEeCCCCCCCCccEEEEEEEEe--CCEEEEEEcCcEEEEcCCCCcc
Q psy1042 324 IRKKRKNLTILTEAHVTRIICDKTPNKHKKLVAKSVEFFY--KKKLRRARAKKEVISSAGAINS 385 (567)
Q Consensus 324 a~~~~~gv~I~~~t~V~~I~~d~~~~~~~~~rv~GV~~~~--~g~~~~v~A~k~VVLAAGa~~T 385 (567)
.++ +.|++|++++.|++|+.+ ++ +|+||.+.+ +|....+.|+ .||||||++..
T Consensus 179 ~~~-~~gV~i~~~t~v~~Li~d--~g-----~V~GV~~~~~~~g~~~~i~Ak-aVVLATGG~g~ 233 (640)
T PRK07573 179 QIA-AGTVKMYTRTEMLDLVVV--DG-----RARGIVARNLVTGEIERHTAD-AVVLATGGYGN 233 (640)
T ss_pred HHH-hcCCEEEeceEEEEEEEe--CC-----EEEEEEEEECCCCcEEEEECC-EEEECCCCccc
Confidence 444 589999999999999986 35 899999875 5666789995 89999999886
No 26
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=99.39 E-value=3.3e-12 Score=132.92 Aligned_cols=61 Identities=31% Similarity=0.343 Sum_probs=45.3
Q ss_pred hHHHHhcCCCeEEecceEEEEEEeCCCCCCCCccEEEEEEEEeCCEEEEEEcCcEEEEcCCCCccHHHHHhCCCC
Q psy1042 321 IRPIRKKRKNLTILTEAHVTRIICDKTPNKHKKLVAKSVEFFYKKKLRRARAKKEVISSAGAINSPKILMLSGIG 395 (567)
Q Consensus 321 L~~a~~~~~gv~I~~~t~V~~I~~d~~~~~~~~~rv~GV~~~~~g~~~~v~A~k~VVLAAGa~~Tp~LLl~SGIG 395 (567)
|...+. +.|++|+++++|++|..+ ++ +++||++.++ .++|+ .||+|+|+ ++++|+..+|+.
T Consensus 153 l~~~~~-~~Gv~i~~~~~V~~i~~~--~~-----~v~gv~~~~g----~i~ad-~vV~a~G~-~s~~l~~~~~~~ 213 (358)
T PF01266_consen 153 LAAEAQ-RAGVEIRTGTEVTSIDVD--GG-----RVTGVRTSDG----EIRAD-RVVLAAGA-WSPQLLPLLGLD 213 (358)
T ss_dssp HHHHHH-HTT-EEEESEEEEEEEEE--TT-----EEEEEEETTE----EEEEC-EEEE--GG-GHHHHHHTTTTS
T ss_pred hHHHHH-Hhhhhccccccccchhhc--cc-----cccccccccc----ccccc-eeEecccc-cceeeeeccccc
Confidence 333344 479999999999999988 45 7899987655 48996 79999995 688888888753
No 27
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=99.38 E-value=6.2e-12 Score=140.34 Aligned_cols=58 Identities=14% Similarity=0.164 Sum_probs=46.0
Q ss_pred hhHHHHhcCCCeEEecceEEEEEEeCCCCCCCCccEEEEEEEEe--CCEEEEEEcCcEEEEcCCCCcc
Q psy1042 320 FIRPIRKKRKNLTILTEAHVTRIICDKTPNKHKKLVAKSVEFFY--KKKLRRARAKKEVISSAGAINS 385 (567)
Q Consensus 320 ~L~~a~~~~~gv~I~~~t~V~~I~~d~~~~~~~~~rv~GV~~~~--~g~~~~v~A~k~VVLAAGa~~T 385 (567)
.|...+. +.|++|++++.|++|+.++ ++ +|+||.+.. +|+.+.+.|+ .||||+|++..
T Consensus 171 ~L~~~a~-~~gv~i~~~~~~~~Li~~~-~g-----~v~Gv~~~~~~~g~~~~i~Ak-aVVLATGG~~~ 230 (617)
T PTZ00139 171 TLYGQSL-KYDCNFFIEYFALDLIMDE-DG-----ECRGVIAMSMEDGSIHRFRAH-YTVIATGGYGR 230 (617)
T ss_pred HHHHHHH-hCCCEEEeceEEEEEEECC-CC-----EEEEEEEEECCCCeEEEEECC-cEEEeCCCCcc
Confidence 3444444 5899999999999999843 35 899998753 6777889995 89999999975
No 28
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=99.37 E-value=2.2e-11 Score=131.33 Aligned_cols=61 Identities=20% Similarity=0.165 Sum_probs=46.1
Q ss_pred hhHHHHhcCCCeEEecceEEEEEEeCCCCCCCCccEEEEEEEEe-CCEEEEEEcCcEEEEcCCCCccHHH
Q psy1042 320 FIRPIRKKRKNLTILTEAHVTRIICDKTPNKHKKLVAKSVEFFY-KKKLRRARAKKEVISSAGAINSPKI 388 (567)
Q Consensus 320 ~L~~a~~~~~gv~I~~~t~V~~I~~d~~~~~~~~~rv~GV~~~~-~g~~~~v~A~k~VVLAAGa~~Tp~L 388 (567)
.|...+. +.+++|+++++|++|+.+++ + +|+||++.. +++...+.+ |.||||+|++....-
T Consensus 135 ~l~~~~~-~~gv~i~~~~~v~~l~~~~~-g-----~v~Gv~~~~~~g~~~~~~a-~~VVlAtGg~~~n~~ 196 (439)
T TIGR01813 135 KLYKKAK-KEGIDTRLNSKVEDLIQDDQ-G-----TVVGVVVKGKGKGIYIKAA-KAVVLATGGFGSNKE 196 (439)
T ss_pred HHHHHHH-HcCCEEEeCCEeeEeEECCC-C-----cEEEEEEEeCCCeEEEEec-ceEEEecCCCCCCHH
Confidence 3444445 58999999999999998643 4 799999875 455556777 589999999887433
No 29
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=99.37 E-value=3.4e-11 Score=133.80 Aligned_cols=62 Identities=21% Similarity=0.228 Sum_probs=49.8
Q ss_pred hHHHHhcCCCeEEecceEEEEEEeCCCCCCCCccEEEEEEEEeCCEEEEEEcCcEEEEcCCCCccHHHHH
Q psy1042 321 IRPIRKKRKNLTILTEAHVTRIICDKTPNKHKKLVAKSVEFFYKKKLRRARAKKEVISSAGAINSPKILM 390 (567)
Q Consensus 321 L~~a~~~~~gv~I~~~t~V~~I~~d~~~~~~~~~rv~GV~~~~~g~~~~v~A~k~VVLAAGa~~Tp~LLl 390 (567)
|...++ +.|++|++++.|++|+.+ ++ +|+||.+..+++.+++.|++.||||+|++...+=|+
T Consensus 227 L~~~~~-~~Gv~i~~~t~v~~Li~~--~g-----~V~GV~~~~~g~~~~i~A~~~VVlAtGg~~~n~em~ 288 (578)
T PRK12843 227 LLYSLR-ARGVRILTQTDVESLETD--HG-----RVIGATVVQGGVRRRIRARGGVVLATGGFNRHPQLR 288 (578)
T ss_pred HHHHHH-hCCCEEEeCCEEEEEEee--CC-----EEEEEEEecCCeEEEEEccceEEECCCCcccCHHHH
Confidence 444445 689999999999999876 35 899999887777778998678999999999854433
No 30
>PRK07804 L-aspartate oxidase; Provisional
Probab=99.37 E-value=2.7e-11 Score=133.59 Aligned_cols=38 Identities=21% Similarity=0.247 Sum_probs=34.9
Q ss_pred CCCcccEEEECCChhHHHHHHHHHhcCCCeEEEEecCCC
Q psy1042 114 DDMTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIE 152 (567)
Q Consensus 114 ~~~~yDvIVVGsG~aG~~aA~~Lae~~G~~VlVLE~G~~ 152 (567)
.+.++||||||||.||++||.++++. |.+|+||||+..
T Consensus 13 ~~~~~DVlVIG~G~AGl~AAi~aae~-G~~VilleK~~~ 50 (541)
T PRK07804 13 WRDAADVVVVGSGVAGLTAALAARRA-GRRVLVVTKAAL 50 (541)
T ss_pred cccccCEEEECccHHHHHHHHHHHHc-CCeEEEEEccCC
Confidence 45679999999999999999999998 999999999864
No 31
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=99.37 E-value=1.6e-11 Score=136.41 Aligned_cols=62 Identities=13% Similarity=0.170 Sum_probs=47.9
Q ss_pred hHHHHhcCCCeEEecceEEEEEEeCCCCCCCCccEEEEEEEEeCCEEEEEEcCcEEEEcCCCCccHHHHH
Q psy1042 321 IRPIRKKRKNLTILTEAHVTRIICDKTPNKHKKLVAKSVEFFYKKKLRRARAKKEVISSAGAINSPKILM 390 (567)
Q Consensus 321 L~~a~~~~~gv~I~~~t~V~~I~~d~~~~~~~~~rv~GV~~~~~g~~~~v~A~k~VVLAAGa~~Tp~LLl 390 (567)
|...+. +.|++|++++.|++|+.+ ++ +|+||.+...+....+.|+|.||||+|++....-++
T Consensus 220 L~~~~~-~~Gv~i~~~~~v~~l~~~--~g-----~V~GV~~~~~~~~~~i~a~k~VVlAtGg~~~n~~~~ 281 (574)
T PRK12842 220 LAKSAL-DLGIPILTGTPARELLTE--GG-----RVVGARVIDAGGERRITARRGVVLACGGFSHDLARI 281 (574)
T ss_pred HHHHHH-hCCCEEEeCCEEEEEEee--CC-----EEEEEEEEcCCceEEEEeCCEEEEcCCCccchHHHH
Confidence 333444 689999999999999987 45 899999876544557888778999999998554443
No 32
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.36 E-value=2.7e-11 Score=133.83 Aligned_cols=57 Identities=18% Similarity=0.239 Sum_probs=45.4
Q ss_pred hHHHHhcCCCeEEecceEEEEEEeCCCCCCCCccEEEEEEEEe--CCEEEEEEcCcEEEEcCCCCcc
Q psy1042 321 IRPIRKKRKNLTILTEAHVTRIICDKTPNKHKKLVAKSVEFFY--KKKLRRARAKKEVISSAGAINS 385 (567)
Q Consensus 321 L~~a~~~~~gv~I~~~t~V~~I~~d~~~~~~~~~rv~GV~~~~--~g~~~~v~A~k~VVLAAGa~~T 385 (567)
|...+. +.|++|+++|.|++|+.++ ++ +|+||.+.+ ++..+.|+| |.||||+|++..
T Consensus 140 L~~~~~-~~gv~i~~~t~v~~Li~~~-~~-----~v~Gv~~~~~~~g~~~~i~A-kaVIlATGG~~~ 198 (543)
T PRK06263 140 LMEYLI-KERIKILEEVMAIKLIVDE-NR-----EVIGAIFLDLRNGEIFPIYA-KATILATGGAGQ 198 (543)
T ss_pred HHHHHh-cCCCEEEeCeEeeeeEEeC-Cc-----EEEEEEEEECCCCcEEEEEc-CcEEECCCCCCC
Confidence 444445 5899999999999999874 33 699998764 576778999 589999999874
No 33
>PLN02661 Putative thiazole synthesis
Probab=99.35 E-value=2.1e-11 Score=124.55 Aligned_cols=71 Identities=25% Similarity=0.285 Sum_probs=50.8
Q ss_pred ccccccCCCCccCCCccCCCCCcccCCCCccccCCCCcccEEEECCChhHHHHHHHHHhcCCCeEEEEecCC
Q psy1042 80 FLKAYDNTGHKKRPEQSNEGYDKDHKNNNREEQDDDMTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGI 151 (567)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIVVGsG~aG~~aA~~Lae~~G~~VlVLE~G~ 151 (567)
--.+|+...+.+.+ +++...++...+..........++||||||+|++|+++|+.|++++|++|+|||++.
T Consensus 56 ~~~~~~~~~~~f~~-~~e~~is~~i~~~~~~~l~~~~~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~ 126 (357)
T PLN02661 56 STAPYDLNNFKFAP-IKESIVSREMTRRYMTDMITYADTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSV 126 (357)
T ss_pred CCCCCcccccccee-chhhHhhccchHhHhhhhhhcccCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCc
Confidence 33456666666655 444444554444444444455679999999999999999999986689999999863
No 34
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=99.35 E-value=2e-11 Score=135.82 Aligned_cols=61 Identities=15% Similarity=0.138 Sum_probs=48.4
Q ss_pred hHHHHhcCCCeEEecceEEEEEEeCCCCCCCCccEEEEEEEEeCCEEEEEEcCcEEEEcCCCCccHHHH
Q psy1042 321 IRPIRKKRKNLTILTEAHVTRIICDKTPNKHKKLVAKSVEFFYKKKLRRARAKKEVISSAGAINSPKIL 389 (567)
Q Consensus 321 L~~a~~~~~gv~I~~~t~V~~I~~d~~~~~~~~~rv~GV~~~~~g~~~~v~A~k~VVLAAGa~~Tp~LL 389 (567)
|...+. +.|++|+++++|++|+.+ ++ +|+||.+..++....|+|+|.||||||++....-+
T Consensus 223 L~~~a~-~~Gv~i~~~t~v~~l~~~--~g-----~v~GV~~~~~~~~~~i~a~k~VVlAtGg~~~n~~~ 283 (581)
T PRK06134 223 LLKSAE-DLGVRIWESAPARELLRE--DG-----RVAGAVVETPGGLQEIRARKGVVLAAGGFPHDPAR 283 (581)
T ss_pred HHHHHH-hCCCEEEcCCEEEEEEEe--CC-----EEEEEEEEECCcEEEEEeCCEEEEcCCCcccCHHH
Confidence 334444 589999999999999886 45 89999987766666799955899999999875554
No 35
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=99.35 E-value=3.7e-11 Score=132.64 Aligned_cols=58 Identities=21% Similarity=0.204 Sum_probs=46.8
Q ss_pred CCCeEEecceEEEEEEeCCCCCCCCccEEEEEEEEe--CCEEEEEEcCcEEEEcCCCCccHHHHHhCCC
Q psy1042 328 RKNLTILTEAHVTRIICDKTPNKHKKLVAKSVEFFY--KKKLRRARAKKEVISSAGAINSPKILMLSGI 394 (567)
Q Consensus 328 ~~gv~I~~~t~V~~I~~d~~~~~~~~~rv~GV~~~~--~g~~~~v~A~k~VVLAAGa~~Tp~LLl~SGI 394 (567)
+.|++|+++++|+.|..+ ++ +++||++.+ +++..+|+|+ .||+|||+ ++.+|+...|+
T Consensus 161 ~~Ga~i~~~t~V~~i~~~--~~-----~v~gv~v~d~~~g~~~~i~A~-~VVnAaG~-wa~~l~~~~g~ 220 (546)
T PRK11101 161 EHGAQILTYHEVTGLIRE--GD-----TVCGVRVRDHLTGETQEIHAP-VVVNAAGI-WGQHIAEYADL 220 (546)
T ss_pred hCCCEEEeccEEEEEEEc--CC-----eEEEEEEEEcCCCcEEEEECC-EEEECCCh-hHHHHHHhcCC
Confidence 489999999999999876 45 899999865 3555689996 69999996 57888776664
No 36
>PRK12839 hypothetical protein; Provisional
Probab=99.35 E-value=1.7e-11 Score=135.70 Aligned_cols=55 Identities=13% Similarity=0.103 Sum_probs=43.3
Q ss_pred CCCeEEecceEEEEEEeCCCCCCCCccEEEEEEEEeCCEEEEEEcCcEEEEcCCCCccHHH
Q psy1042 328 RKNLTILTEAHVTRIICDKTPNKHKKLVAKSVEFFYKKKLRRARAKKEVISSAGAINSPKI 388 (567)
Q Consensus 328 ~~gv~I~~~t~V~~I~~d~~~~~~~~~rv~GV~~~~~g~~~~v~A~k~VVLAAGa~~Tp~L 388 (567)
+.|++|+++|.|++|+.++ ++ +|+||.+...+...++.+.|.||||||+|....-
T Consensus 226 ~~Gv~i~~~t~v~~Li~~~-~g-----~V~GV~~~~~~g~~~i~aak~VVLAtGGf~~n~~ 280 (572)
T PRK12839 226 DLGVDLRVSTSATSLTTDK-NG-----RVTGVRVQGPDGAVTVEATRGVVLATGGFPNDVD 280 (572)
T ss_pred HCCCEEEcCCEEEEEEECC-CC-----cEEEEEEEeCCCcEEEEeCCEEEEcCCCcccCHH
Confidence 5799999999999998864 34 8999998764334556665789999999997443
No 37
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.34 E-value=3.7e-11 Score=133.92 Aligned_cols=57 Identities=21% Similarity=0.281 Sum_probs=45.9
Q ss_pred hHHHHhcCCCeEEecceEEEEEEeCCCCCCCCccEEEEEEEEe--CCEEEEEEcCcEEEEcCCCCcc
Q psy1042 321 IRPIRKKRKNLTILTEAHVTRIICDKTPNKHKKLVAKSVEFFY--KKKLRRARAKKEVISSAGAINS 385 (567)
Q Consensus 321 L~~a~~~~~gv~I~~~t~V~~I~~d~~~~~~~~~rv~GV~~~~--~g~~~~v~A~k~VVLAAGa~~T 385 (567)
|...+. +.|++|++++.|++|+.++ ++ +|+||.+.+ +|..+.|.| |.||||+|++..
T Consensus 155 L~~~~~-~~gi~i~~~~~v~~Li~~~-~g-----~v~Gv~~~~~~~g~~~~i~A-kaVVLATGG~~~ 213 (598)
T PRK09078 155 LYQQSL-KHNAEFFIEYFALDLIMDD-GG-----VCRGVVAWNLDDGTLHRFRA-HMVVLATGGYGR 213 (598)
T ss_pred HHHHHh-hcCCEEEEeEEEEEEEEcC-CC-----EEEEEEEEECCCCcEEEEEc-CEEEECCCCCcc
Confidence 444444 5799999999999999874 34 899998853 677788999 589999999986
No 38
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.33 E-value=5.6e-11 Score=132.23 Aligned_cols=49 Identities=14% Similarity=0.089 Sum_probs=40.8
Q ss_pred CeEEecceEEEEEEeCCCCCCCCccEEEEEEEEe--CCEEEEEEcCcEEEEcCCCCcc
Q psy1042 330 NLTILTEAHVTRIICDKTPNKHKKLVAKSVEFFY--KKKLRRARAKKEVISSAGAINS 385 (567)
Q Consensus 330 gv~I~~~t~V~~I~~d~~~~~~~~~rv~GV~~~~--~g~~~~v~A~k~VVLAAGa~~T 385 (567)
+++|+.++.|++|+.++ ++ +|+||.+.+ +++.+.+.| |.||||||++..
T Consensus 151 ~i~i~~~~~~~~Li~~~-~g-----~v~Gv~~~~~~~g~~~~i~A-kaVILATGG~~~ 201 (589)
T PRK08641 151 LVTKYEGWEFLGAVLDD-EG-----VCRGIVAQDLFTMEIESFPA-DAVIMATGGPGI 201 (589)
T ss_pred CcEEEeeEEEEEEEECC-CC-----EEEEEEEEECCCCcEEEEEC-CEEEECCCCCcC
Confidence 48999999999999864 34 899999875 466677889 589999999985
No 39
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.32 E-value=2.9e-11 Score=134.35 Aligned_cols=56 Identities=30% Similarity=0.371 Sum_probs=44.1
Q ss_pred hHHHHhcCCCeEEecceEEEEEEeCCCCCCCCccEEEEEEEEe--CCEEEEEEcCcEEEEcCCCCcc
Q psy1042 321 IRPIRKKRKNLTILTEAHVTRIICDKTPNKHKKLVAKSVEFFY--KKKLRRARAKKEVISSAGAINS 385 (567)
Q Consensus 321 L~~a~~~~~gv~I~~~t~V~~I~~d~~~~~~~~~rv~GV~~~~--~g~~~~v~A~k~VVLAAGa~~T 385 (567)
|...+. +.|++|++++.|++|+.+ ++ +|.||.+.. +++...+.| |.||||+|++..
T Consensus 141 L~~~~~-~~gi~i~~~t~v~~L~~~--~g-----~v~Gv~~~~~~~g~~~~i~A-kaVVlATGG~~~ 198 (575)
T PRK05945 141 LVNNLR-RYGVTIYDEWYVMRLILE--DN-----QAKGVVMYHIADGRLEVVRA-KAVMFATGGYGR 198 (575)
T ss_pred HHHHHh-hCCCEEEeCcEEEEEEEE--CC-----EEEEEEEEEcCCCeEEEEEC-CEEEECCCCCcC
Confidence 444444 579999999999999876 35 899998643 566677999 489999999864
No 40
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=99.31 E-value=1.3e-10 Score=125.97 Aligned_cols=53 Identities=21% Similarity=0.115 Sum_probs=41.1
Q ss_pred eEEecceEEEEEEeCCCCCCCCccEEEEEEEEeCCEEEEEEcCcEEEEcCCCCccHHHHHhCCCCC
Q psy1042 331 LTILTEAHVTRIICDKTPNKHKKLVAKSVEFFYKKKLRRARAKKEVISSAGAINSPKILMLSGIGP 396 (567)
Q Consensus 331 v~I~~~t~V~~I~~d~~~~~~~~~rv~GV~~~~~g~~~~v~A~k~VVLAAGa~~Tp~LLl~SGIG~ 396 (567)
++|+++|+|+.|..++ + .+..|.+..+ +++|+ .||+|||+ ++.+|+..+|++.
T Consensus 232 v~i~~~t~V~~I~~~~--~-----~~~~V~T~~G----~i~A~-~VVvaAG~-~S~~La~~~Gi~~ 284 (497)
T PTZ00383 232 ISINLNTEVLNIERSN--D-----SLYKIHTNRG----EIRAR-FVVVSACG-YSLLFAQKMGYGL 284 (497)
T ss_pred EEEEeCCEEEEEEecC--C-----CeEEEEECCC----EEEeC-EEEECcCh-hHHHHHHHhCCCC
Confidence 8999999999998762 3 3455655433 68996 69999997 5888999999863
No 41
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.30 E-value=9.3e-11 Score=130.51 Aligned_cols=51 Identities=14% Similarity=0.088 Sum_probs=42.4
Q ss_pred CCCeEEecceEEEEEEeCCCCCCCCccEEEEEEEEe--CCEEEEEEcCcEEEEcCCCCcc
Q psy1042 328 RKNLTILTEAHVTRIICDKTPNKHKKLVAKSVEFFY--KKKLRRARAKKEVISSAGAINS 385 (567)
Q Consensus 328 ~~gv~I~~~t~V~~I~~d~~~~~~~~~rv~GV~~~~--~g~~~~v~A~k~VVLAAGa~~T 385 (567)
+.|++|+.++.|++|+.++ ++ +|+||.+.+ ++....+.| |.||||+|++..
T Consensus 160 ~~gi~i~~~~~~~~Li~~~-~g-----~v~Gv~~~~~~~g~~~~i~A-kaVILATGG~~~ 212 (591)
T PRK07057 160 AAKTQFFVEWMALDLIRDA-DG-----DVLGVTALEMETGDVYILEA-KTTLFATGGAGR 212 (591)
T ss_pred hcCCEEEeCcEEEEEEEcC-CC-----eEEEEEEEEcCCCeEEEEEC-CeEEECCCCccc
Confidence 5799999999999999864 34 899998853 566678889 489999999874
No 42
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=99.30 E-value=8.2e-11 Score=131.28 Aligned_cols=48 Identities=23% Similarity=0.281 Sum_probs=39.3
Q ss_pred CCeEEecceEEEEEEeCCCCCCCCccEEEEEEEEe--CCEEEEEEcCcEEEEcCCCCc
Q psy1042 329 KNLTILTEAHVTRIICDKTPNKHKKLVAKSVEFFY--KKKLRRARAKKEVISSAGAIN 384 (567)
Q Consensus 329 ~gv~I~~~t~V~~I~~d~~~~~~~~~rv~GV~~~~--~g~~~~v~A~k~VVLAAGa~~ 384 (567)
.|++|+.++.|++|+.+ ++ +|+||.+.. +++...+.|+ .||||+|++.
T Consensus 146 ggV~i~~~~~v~~Li~~--~g-----~v~Gv~~~~~~~g~~~~i~Ak-aVILATGG~~ 195 (608)
T PRK06854 146 LGDNVLNRVFITDLLVD--DN-----RIAGAVGFSVRENKFYVFKAK-AVIVATGGAA 195 (608)
T ss_pred CCCEEEeCCEEEEEEEe--CC-----EEEEEEEEEccCCcEEEEECC-EEEECCCchh
Confidence 45999999999999876 34 899997643 5666689995 8999999986
No 43
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=99.29 E-value=8.6e-11 Score=131.95 Aligned_cols=56 Identities=13% Similarity=0.119 Sum_probs=45.6
Q ss_pred hHHHHhcCCCeEEecceEEEEEEeCCCCCCCCccEEEEEEEEe--CCEEEEEEcCcEEEEcCCCCcc
Q psy1042 321 IRPIRKKRKNLTILTEAHVTRIICDKTPNKHKKLVAKSVEFFY--KKKLRRARAKKEVISSAGAINS 385 (567)
Q Consensus 321 L~~a~~~~~gv~I~~~t~V~~I~~d~~~~~~~~~rv~GV~~~~--~g~~~~v~A~k~VVLAAGa~~T 385 (567)
|...+. +.|++|+.++.|++|+.+ ++ +|+||.+.+ +|+.+.+.| |.||||||++..
T Consensus 164 L~~~~~-~~gv~i~~~~~~~~Li~~--~g-----~v~Gv~~~~~~~G~~~~i~A-kaVVLATGG~g~ 221 (657)
T PRK08626 164 VDNEAI-KLGVPVHDRKEAIALIHD--GK-----RCYGAVVRCLITGELRAYVA-KATLIATGGYGR 221 (657)
T ss_pred HHHHHH-hCCCEEEeeEEEEEEEEE--CC-----EEEEEEEEEcCCCcEEEEEc-CeEEECCCcccC
Confidence 333344 589999999999999986 45 899999875 677788999 589999999874
No 44
>PRK08275 putative oxidoreductase; Provisional
Probab=99.28 E-value=1.1e-10 Score=129.26 Aligned_cols=58 Identities=24% Similarity=0.222 Sum_probs=45.3
Q ss_pred HhhHHHHhcCCCeEEecceEEEEEEeCCCCCCCCccEEEEEEEEe--CCEEEEEEcCcEEEEcCCCCc
Q psy1042 319 AFIRPIRKKRKNLTILTEAHVTRIICDKTPNKHKKLVAKSVEFFY--KKKLRRARAKKEVISSAGAIN 384 (567)
Q Consensus 319 ~~L~~a~~~~~gv~I~~~t~V~~I~~d~~~~~~~~~rv~GV~~~~--~g~~~~v~A~k~VVLAAGa~~ 384 (567)
..|...+. +.|++|++++.|++|+.++ ++ +|+||.+.+ +|....+.|+ .||||+|++.
T Consensus 141 ~~L~~~~~-~~gv~i~~~~~v~~Li~~~-~g-----~v~Gv~~~~~~~g~~~~i~Ak-~VIlATGG~~ 200 (554)
T PRK08275 141 KVLYRQLK-RARVLITNRIMATRLLTDA-DG-----RVAGALGFDCRTGEFLVIRAK-AVILCCGAAG 200 (554)
T ss_pred HHHHHHHH-HCCCEEEcceEEEEEEEcC-CC-----eEEEEEEEecCCCcEEEEECC-EEEECCCCcc
Confidence 34555455 5899999999999999863 24 799998754 5666788994 8999999985
No 45
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=99.28 E-value=8e-11 Score=130.82 Aligned_cols=50 Identities=18% Similarity=0.265 Sum_probs=41.6
Q ss_pred CCCeEEecceEEEEEEeCCCCCCCCccEEEEEEEEe--CCEEEEEEcCcEEEEcCCCCcc
Q psy1042 328 RKNLTILTEAHVTRIICDKTPNKHKKLVAKSVEFFY--KKKLRRARAKKEVISSAGAINS 385 (567)
Q Consensus 328 ~~gv~I~~~t~V~~I~~d~~~~~~~~~rv~GV~~~~--~g~~~~v~A~k~VVLAAGa~~T 385 (567)
..++++++++.|++|+.+ ++ +|+||.+.. ++....+.| |.||||+|++..
T Consensus 146 ~~~i~i~~~~~v~~Li~~--~g-----~v~Gv~~~~~~~g~~~~i~A-kaVIlATGG~~~ 197 (582)
T PRK09231 146 YPQIQRFDEHFVLDILVD--DG-----HVRGLVAMNMMEGTLVQIRA-NAVVMATGGAGR 197 (582)
T ss_pred CCCcEEEeCeEEEEEEEe--CC-----EEEEEEEEEcCCCcEEEEEC-CEEEECCCCCcC
Confidence 368999999999999986 35 899998753 566778999 589999999874
No 46
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.28 E-value=1e-10 Score=130.98 Aligned_cols=47 Identities=15% Similarity=0.280 Sum_probs=39.5
Q ss_pred eEEecceEEEEEEeCCCCCCCCccEEEEEEEEe--CCEEEEEEcCcEEEEcCCCCcc
Q psy1042 331 LTILTEAHVTRIICDKTPNKHKKLVAKSVEFFY--KKKLRRARAKKEVISSAGAINS 385 (567)
Q Consensus 331 v~I~~~t~V~~I~~d~~~~~~~~~rv~GV~~~~--~g~~~~v~A~k~VVLAAGa~~T 385 (567)
++|++++.|++|+.+ ++ +|+||.+.. ++....+.|+ .||||+|++..
T Consensus 166 v~i~~~~~v~~L~~~--~g-----~v~Gv~~~~~~~g~~~~i~Ak-~VVlATGG~~~ 214 (626)
T PRK07803 166 IKVFAECTITELLKD--GG-----RIAGAFGYWRESGRFVLFEAP-AVVLATGGIGK 214 (626)
T ss_pred eEEEeCCEEEEEEEE--CC-----EEEEEEEEECCCCeEEEEEcC-eEEECCCcccC
Confidence 999999999999976 35 899998753 5777789995 89999999764
No 47
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=99.27 E-value=1e-10 Score=130.07 Aligned_cols=56 Identities=16% Similarity=0.198 Sum_probs=44.3
Q ss_pred hHHHHhcCCCeEEecceEEEEEEeCCCCCCCCccEEEEEEEEe--CCEEEEEEcCcEEEEcCCCCcc
Q psy1042 321 IRPIRKKRKNLTILTEAHVTRIICDKTPNKHKKLVAKSVEFFY--KKKLRRARAKKEVISSAGAINS 385 (567)
Q Consensus 321 L~~a~~~~~gv~I~~~t~V~~I~~d~~~~~~~~~rv~GV~~~~--~g~~~~v~A~k~VVLAAGa~~T 385 (567)
|...+. +.|++|++++.|++|+.+ ++ +|+||.+.. +++...+.| |.||||+|++..
T Consensus 135 L~~~~~-~~gv~i~~~~~v~~L~~~--~g-----~v~Gv~~~~~~~g~~~~i~A-k~VVlAtGG~~~ 192 (566)
T TIGR01812 135 LYEQCL-KLGVSFFNEYFALDLIHD--DG-----RVRGVVAYDLKTGEIVFFRA-KAVVLATGGYGR 192 (566)
T ss_pred HHHHHH-HcCCEEEeccEEEEEEEe--CC-----EEEEEEEEECCCCcEEEEEC-CeEEECCCcccC
Confidence 444344 469999999999999986 35 899998754 566678999 589999999864
No 48
>PRK09077 L-aspartate oxidase; Provisional
Probab=99.27 E-value=1.6e-10 Score=127.45 Aligned_cols=52 Identities=19% Similarity=0.291 Sum_probs=42.6
Q ss_pred CCCeEEecceEEEEEEeCC----CCCCCCccEEEEEEEEe--CCEEEEEEcCcEEEEcCCCCcc
Q psy1042 328 RKNLTILTEAHVTRIICDK----TPNKHKKLVAKSVEFFY--KKKLRRARAKKEVISSAGAINS 385 (567)
Q Consensus 328 ~~gv~I~~~t~V~~I~~d~----~~~~~~~~rv~GV~~~~--~g~~~~v~A~k~VVLAAGa~~T 385 (567)
.+|++|++++.|++|+.++ +++ +|+||.+.+ +++...|.| |.||||+|++..
T Consensus 151 ~~~I~v~~~~~v~~Li~~~~~~~~~g-----~v~Gv~~~~~~~g~~~~i~A-k~VVlATGG~~~ 208 (536)
T PRK09077 151 HPNITVLERHNAIDLITSDKLGLPGR-----RVVGAYVLNRNKERVETIRA-KFVVLATGGASK 208 (536)
T ss_pred CCCcEEEeeEEeeeeeecccccCCCC-----EEEEEEEEECCCCcEEEEec-CeEEECCCCCCC
Confidence 5699999999999999763 124 899999864 577778999 589999999874
No 49
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=99.25 E-value=2.1e-10 Score=125.12 Aligned_cols=58 Identities=10% Similarity=0.202 Sum_probs=44.6
Q ss_pred hhHHHHhcCCCeEEecceEEEEEEeCCCCCCCCccEEEEEEEEeCCEEEEEEcCcEEEEcCCCCcc
Q psy1042 320 FIRPIRKKRKNLTILTEAHVTRIICDKTPNKHKKLVAKSVEFFYKKKLRRARAKKEVISSAGAINS 385 (567)
Q Consensus 320 ~L~~a~~~~~gv~I~~~t~V~~I~~d~~~~~~~~~rv~GV~~~~~g~~~~v~A~k~VVLAAGa~~T 385 (567)
.|...+.+.+|++|++++.|++|+.+ ++ +++||.+...+....+.|+ .||||+|++..
T Consensus 133 ~L~~~~~~~~gi~i~~~~~v~~l~~~--~g-----~v~Gv~~~~~~~~~~i~A~-~VVlAtGG~~~ 190 (488)
T TIGR00551 133 TLVKKALNHPNIRIIEGENALDLLIE--TG-----RVVGVWVWNRETVETCHAD-AVVLATGGAGK 190 (488)
T ss_pred HHHHHHHhcCCcEEEECeEeeeeecc--CC-----EEEEEEEEECCcEEEEEcC-EEEECCCcccC
Confidence 34444441379999999999999876 34 7999988765555678995 89999999875
No 50
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=99.25 E-value=2e-10 Score=127.47 Aligned_cols=50 Identities=16% Similarity=0.151 Sum_probs=42.2
Q ss_pred CCCeEEecceEEEEEEeCCCCCCCCccEEEEEEEEe--CCEEEEEEcCcEEEEcCCCCcc
Q psy1042 328 RKNLTILTEAHVTRIICDKTPNKHKKLVAKSVEFFY--KKKLRRARAKKEVISSAGAINS 385 (567)
Q Consensus 328 ~~gv~I~~~t~V~~I~~d~~~~~~~~~rv~GV~~~~--~g~~~~v~A~k~VVLAAGa~~T 385 (567)
.++++++.++.|++|+.+ ++ +|+||.+.+ +|....+.| |.||||+|++..
T Consensus 145 ~~~i~i~~~~~v~~Li~~--~g-----~v~Gv~~~~~~~g~~~~i~A-kaVILATGG~~~ 196 (580)
T TIGR01176 145 YPQIMRYDEWFVTDLLVD--DG-----RVCGLVAIEMAEGRLVTILA-DAVVLATGGAGR 196 (580)
T ss_pred cCCCEEEeCeEEEEEEee--CC-----EEEEEEEEEcCCCcEEEEec-CEEEEcCCCCcc
Confidence 468999999999999986 35 899998754 677778999 589999999874
No 51
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.24 E-value=2e-10 Score=127.77 Aligned_cols=49 Identities=24% Similarity=0.297 Sum_probs=40.9
Q ss_pred CCCeEEecceEEEEEEeCCCCCCCCccEEEEEEEEe--CCEEEEEEcCcEEEEcCCCCc
Q psy1042 328 RKNLTILTEAHVTRIICDKTPNKHKKLVAKSVEFFY--KKKLRRARAKKEVISSAGAIN 384 (567)
Q Consensus 328 ~~gv~I~~~t~V~~I~~d~~~~~~~~~rv~GV~~~~--~g~~~~v~A~k~VVLAAGa~~ 384 (567)
..+++|+.++.|++|+.+ ++ +|+||.+.. ++....+.|+ .||||+|++.
T Consensus 150 ~~gv~i~~~~~v~~Li~~--~g-----~v~Gv~~~~~~~g~~~~i~Ak-~VIlATGG~~ 200 (577)
T PRK06069 150 FDNIHFYDEHFVTSLIVE--NG-----VFKGVTAIDLKRGEFKVFQAK-AGIIATGGAG 200 (577)
T ss_pred cCCCEEEECCEEEEEEEE--CC-----EEEEEEEEEcCCCeEEEEECC-cEEEcCchhc
Confidence 479999999999999976 35 899998754 5666789995 7999999985
No 52
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=99.24 E-value=1.7e-10 Score=128.60 Aligned_cols=50 Identities=16% Similarity=0.109 Sum_probs=42.0
Q ss_pred CCeEEecceEEEEEEeCCCCCCCCccEEEEEEEEe--CCEEEEEEcCcEEEEcCCCCcc
Q psy1042 329 KNLTILTEAHVTRIICDKTPNKHKKLVAKSVEFFY--KKKLRRARAKKEVISSAGAINS 385 (567)
Q Consensus 329 ~gv~I~~~t~V~~I~~d~~~~~~~~~rv~GV~~~~--~g~~~~v~A~k~VVLAAGa~~T 385 (567)
.|++|++++.|++|+.++ ++ +|+||.+.+ ++....+.|+ .||||||++..
T Consensus 146 ~gV~i~~~t~v~~Li~dd-~g-----rV~GV~~~~~~~g~~~~i~Ak-aVVLATGG~g~ 197 (603)
T TIGR01811 146 GLVEKYEGWEMLDIIVVD-GN-----RARGIIARNLVTGEIETHSAD-AVILATGGYGN 197 (603)
T ss_pred CCcEEEeCcEEEEEEEcC-CC-----EEEEEEEEECCCCcEEEEEcC-EEEECCCCCcC
Confidence 589999999999999864 35 899999875 5666789995 89999999864
No 53
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.23 E-value=2.9e-10 Score=126.57 Aligned_cols=59 Identities=17% Similarity=0.176 Sum_probs=45.7
Q ss_pred hhHHHHhcCCCeEEecceEEEEEEeCCC--CCCCCccEEEEEEEEe--CCEEEEEEcCcEEEEcCCCCcc
Q psy1042 320 FIRPIRKKRKNLTILTEAHVTRIICDKT--PNKHKKLVAKSVEFFY--KKKLRRARAKKEVISSAGAINS 385 (567)
Q Consensus 320 ~L~~a~~~~~gv~I~~~t~V~~I~~d~~--~~~~~~~rv~GV~~~~--~g~~~~v~A~k~VVLAAGa~~T 385 (567)
.|...+. +.|++|++++.|++|+.+++ ++ +|+||.+.. +++.+.+.| |.||||+|++..
T Consensus 145 ~L~~~~~-~~gv~i~~~~~v~~Li~~~~~~~g-----~v~Gv~~~~~~~g~~~~i~A-kaVVLATGG~~~ 207 (583)
T PRK08205 145 TLYQNCV-KHGVEFFNEFYVLDLLLTETPSGP-----VAAGVVAYELATGEIHVFHA-KAVVFATGGSGR 207 (583)
T ss_pred HHHHHHH-hcCCEEEeCCEEEEEEecCCccCC-----cEEEEEEEEcCCCeEEEEEe-CeEEECCCCCcc
Confidence 3444454 57999999999999998642 14 899998753 566678999 589999999873
No 54
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=99.22 E-value=5.5e-11 Score=121.04 Aligned_cols=111 Identities=14% Similarity=0.153 Sum_probs=66.0
Q ss_pred HHHHHHHHhcCCCCCCCCCCCceeeeeeccccCCCcccch-hHHhhHHHHhcCCCeEEecceEEEEEEeCCCCCCCCccE
Q psy1042 277 PVLIKAWKEKGYPERDLNAENQIGVMHLQTTTRHGERLST-NGAFIRPIRKKRKNLTILTEAHVTRIICDKTPNKHKKLV 355 (567)
Q Consensus 277 ~~~~~~~~~~G~~~~~~~~~~~~g~~~~~~~~~~g~r~s~-~~~~L~~a~~~~~gv~I~~~t~V~~I~~d~~~~~~~~~r 355 (567)
+.++.+++.+|++...-.. |. .+ |.. .+.+. ...++. .++ +.|++|+++++|.+|..++ .
T Consensus 82 ~d~i~~~e~~Gi~~~e~~~----Gr-~F---p~s-dkA~~Iv~~ll~-~~~-~~gV~i~~~~~v~~v~~~~--~------ 142 (408)
T COG2081 82 EDFIDWVEGLGIALKEEDL----GR-MF---PDS-DKASPIVDALLK-ELE-ALGVTIRTRSRVSSVEKDD--S------ 142 (408)
T ss_pred HHHHHHHHhcCCeeEEccC----ce-ec---CCc-cchHHHHHHHHH-HHH-HcCcEEEecceEEeEEecC--c------
Confidence 6788888999998642221 11 11 111 12223 333444 444 5899999999999998773 1
Q ss_pred EEEEEEEeCCEEEEEEcCcEEEEcCCCCccHHHHHhCCCCCcchhhhcCCcccccCC
Q psy1042 356 AKSVEFFYKKKLRRARAKKEVISSAGAINSPKILMLSGIGPKDHLTSLNIKTLVDLK 412 (567)
Q Consensus 356 v~GV~~~~~g~~~~v~A~k~VVLAAGa~~Tp~LLl~SGIG~~~~L~~~gI~v~~~lp 412 (567)
.-.|.+ .+|. +|+++ .+|||+|+..-|++= ..|.| -..++++|++|+--.|
T Consensus 143 ~f~l~t-~~g~--~i~~d-~lilAtGG~S~P~lG-stg~g-y~iA~~~G~~I~~~rp 193 (408)
T COG2081 143 GFRLDT-SSGE--TVKCD-SLILATGGKSWPKLG-STGFG-YPIARQFGHTITPLRP 193 (408)
T ss_pred eEEEEc-CCCC--EEEcc-EEEEecCCcCCCCCC-CCchh-hHHHHHcCCccccCcc
Confidence 223332 2333 78997 699999998888641 11222 2345667776655444
No 55
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=99.21 E-value=1.6e-10 Score=123.38 Aligned_cols=55 Identities=22% Similarity=0.210 Sum_probs=41.1
Q ss_pred CCCeEEecceEEEEEEeCCCCCCCCccEEEEEEEEeCCEEEEEEcCcEEEEcCCCCccHHHHHhCCC
Q psy1042 328 RKNLTILTEAHVTRIICDKTPNKHKKLVAKSVEFFYKKKLRRARAKKEVISSAGAINSPKILMLSGI 394 (567)
Q Consensus 328 ~~gv~I~~~t~V~~I~~d~~~~~~~~~rv~GV~~~~~g~~~~v~A~k~VVLAAGa~~Tp~LLl~SGI 394 (567)
+.|++++.+|+|++|..++ ++ ++.+|++.++ ++.|+ .||+|||++ ++.++...|+
T Consensus 195 ~~Gv~~~~~~~V~~i~~~~-~~-----~~~~v~t~~g----~i~a~-~vVvaagg~-~~~l~~~~g~ 249 (407)
T TIGR01373 195 RRGVDIIQNCEVTGFIRRD-GG-----RVIGVETTRG----FIGAK-KVGVAVAGH-SSVVAAMAGF 249 (407)
T ss_pred HCCCEEEeCCEEEEEEEcC-CC-----cEEEEEeCCc----eEECC-EEEECCChh-hHHHHHHcCC
Confidence 5899999999999997643 23 5777776543 58896 699999986 4566665565
No 56
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=99.21 E-value=6.8e-10 Score=118.62 Aligned_cols=34 Identities=24% Similarity=0.348 Sum_probs=32.4
Q ss_pred ccEEEECCChhHHHHHHHHHhcCCCeEEEEecCCC
Q psy1042 118 FDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIE 152 (567)
Q Consensus 118 yDvIVVGsG~aG~~aA~~Lae~~G~~VlVLE~G~~ 152 (567)
+||||||||++|+++|++|+++ |.+|+||||+..
T Consensus 2 ~~vvIIGaG~~G~~~A~~La~~-g~~V~vle~~~~ 35 (410)
T PRK12409 2 SHIAVIGAGITGVTTAYALAQR-GYQVTVFDRHRY 35 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHC-CCeEEEEeCCCC
Confidence 6999999999999999999998 999999999874
No 57
>PRK08071 L-aspartate oxidase; Provisional
Probab=99.21 E-value=2.8e-10 Score=124.63 Aligned_cols=49 Identities=20% Similarity=0.232 Sum_probs=41.3
Q ss_pred CCeEEecceEEEEEEeCCCCCCCCccEEEEEEEEe-CCEEEEEEcCcEEEEcCCCCcc
Q psy1042 329 KNLTILTEAHVTRIICDKTPNKHKKLVAKSVEFFY-KKKLRRARAKKEVISSAGAINS 385 (567)
Q Consensus 329 ~gv~I~~~t~V~~I~~d~~~~~~~~~rv~GV~~~~-~g~~~~v~A~k~VVLAAGa~~T 385 (567)
.|++|++++.|++|+.+ ++ +|.||.+.+ +++.+.++|+ .||||+|++..
T Consensus 142 ~gV~i~~~~~v~~Li~~--~g-----~v~Gv~~~~~~g~~~~i~Ak-~VVlATGG~~~ 191 (510)
T PRK08071 142 PHVTVVEQEMVIDLIIE--NG-----RCIGVLTKDSEGKLKRYYAD-YVVLASGGCGG 191 (510)
T ss_pred cCCEEEECeEhhheeec--CC-----EEEEEEEEECCCcEEEEEcC-eEEEecCCCcc
Confidence 68999999999999876 35 899998876 4666788995 89999999874
No 58
>PRK07512 L-aspartate oxidase; Provisional
Probab=99.20 E-value=3.1e-10 Score=124.44 Aligned_cols=50 Identities=20% Similarity=0.238 Sum_probs=41.6
Q ss_pred CCCeEEecceEEEEEEeCCCCCCCCccEEEEEEEEeCCEEEEEEcCcEEEEcCCCCcc
Q psy1042 328 RKNLTILTEAHVTRIICDKTPNKHKKLVAKSVEFFYKKKLRRARAKKEVISSAGAINS 385 (567)
Q Consensus 328 ~~gv~I~~~t~V~~I~~d~~~~~~~~~rv~GV~~~~~g~~~~v~A~k~VVLAAGa~~T 385 (567)
+.|++|+.++.|++|+.+ ++ +|+||.+...+....+.|+ .||||+|++..
T Consensus 149 ~~gV~i~~~~~v~~Li~~--~g-----~v~Gv~~~~~~~~~~i~Ak-~VVLATGG~~~ 198 (513)
T PRK07512 149 TPSITVLEGAEARRLLVD--DG-----AVAGVLAATAGGPVVLPAR-AVVLATGGIGG 198 (513)
T ss_pred CCCCEEEECcChhheeec--CC-----EEEEEEEEeCCeEEEEECC-EEEEcCCCCcC
Confidence 458999999999999876 35 8999998776656678995 79999999863
No 59
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.20 E-value=5.5e-10 Score=130.12 Aligned_cols=49 Identities=16% Similarity=0.197 Sum_probs=40.8
Q ss_pred CCeEEecceEEEEEEeCCCCCCCCccEEEEEEEEe--CCEEEEEEcCcEEEEcCCCCcc
Q psy1042 329 KNLTILTEAHVTRIICDKTPNKHKKLVAKSVEFFY--KKKLRRARAKKEVISSAGAINS 385 (567)
Q Consensus 329 ~gv~I~~~t~V~~I~~d~~~~~~~~~rv~GV~~~~--~g~~~~v~A~k~VVLAAGa~~T 385 (567)
.++.+.+++.+++|+.+ ++ +|+||.+.+ +|+.+.+.| |.||||||+++.
T Consensus 156 ~~i~~~~~~~~~~Li~~--~g-----~v~Gv~~~~~~~g~~~~i~A-kaVILATGG~g~ 206 (897)
T PRK13800 156 ERIRIENRLMPVRVLTE--GG-----RAVGAAALNTRTGEFVTVGA-KAVILATGPCGR 206 (897)
T ss_pred CCcEEEeceeeEEEEee--CC-----EEEEEEEEecCCCcEEEEEC-CEEEECCCcccc
Confidence 47899999999999876 45 899998754 577788999 589999999863
No 60
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=99.20 E-value=4.2e-11 Score=126.57 Aligned_cols=118 Identities=19% Similarity=0.141 Sum_probs=58.8
Q ss_pred HHHHHHHHhcCCCCC-CCCCCCceeeeeeccccCCCcccchhHHhhHHHHhcCCCeEEecceEEEEEEeCCCCCCCCccE
Q psy1042 277 PVLIKAWKEKGYPER-DLNAENQIGVMHLQTTTRHGERLSTNGAFIRPIRKKRKNLTILTEAHVTRIICDKTPNKHKKLV 355 (567)
Q Consensus 277 ~~~~~~~~~~G~~~~-~~~~~~~~g~~~~~~~~~~g~r~s~~~~~L~~a~~~~~gv~I~~~t~V~~I~~d~~~~~~~~~r 355 (567)
..+++.++++|++.. ..++ ..+|.+ .+.......|...++ +.|++|+++++|+.|..++ + .
T Consensus 80 ~d~~~ff~~~Gv~~~~~~~g------r~fP~s----~~a~~Vv~~L~~~l~-~~gv~i~~~~~V~~i~~~~--~-----~ 141 (409)
T PF03486_consen 80 EDLIAFFEELGVPTKIEEDG------RVFPKS----DKASSVVDALLEELK-RLGVEIHFNTRVKSIEKKE--D-----G 141 (409)
T ss_dssp HHHHHHHHHTT--EEE-STT------EEEETT------HHHHHHHHHHHHH-HHT-EEE-S--EEEEEEET--T-----E
T ss_pred HHHHHHHHhcCCeEEEcCCC------EECCCC----CcHHHHHHHHHHHHH-HcCCEEEeCCEeeeeeecC--C-----c
Confidence 567777888888763 2222 122221 122233334444445 5899999999999998873 4 6
Q ss_pred EEEEEEEeCCEEEEEEcCcEEEEcCCCCccHHHHHhCCCCCcchhhhcCCcccccCC--cchhhh
Q psy1042 356 AKSVEFFYKKKLRRARAKKEVISSAGAINSPKILMLSGIGPKDHLTSLNIKTLVDLK--VGHNLQ 418 (567)
Q Consensus 356 v~GV~~~~~g~~~~v~A~k~VVLAAGa~~Tp~LLl~SGIG~~~~L~~~gI~v~~~lp--VG~nl~ 418 (567)
+..|++. ++ ..+.|+ .||||+|+...|++ =-+|-| -..++++|+.++.-.| |+-...
T Consensus 142 ~f~v~~~-~~--~~~~a~-~vILAtGG~S~p~~-GS~G~g-y~~a~~lGh~i~~~~PaL~~l~~~ 200 (409)
T PF03486_consen 142 VFGVKTK-NG--GEYEAD-AVILATGGKSYPKT-GSDGSG-YRIAKKLGHTITPPYPALVPLKCD 200 (409)
T ss_dssp EEEEEET-TT--EEEEES-EEEE----SSSGGG-T-SSHH-HHHHHHTT--EEEEEEES--EE--
T ss_pred eeEeecc-Cc--ccccCC-EEEEecCCCCcccc-CCCcHH-HHHHHHCCCcEecCCCccCCeeec
Confidence 7778772 32 378996 69999999888874 111211 2346678887766555 543333
No 61
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=99.19 E-value=1.7e-10 Score=125.06 Aligned_cols=38 Identities=32% Similarity=0.385 Sum_probs=33.9
Q ss_pred CCcccEEEECCChhHHHHHHHHHhc-CCCeEEEEecCCC
Q psy1042 115 DMTFDFIIIGAGSAGCVLANRLSEI-KKWKVLLLEAGIE 152 (567)
Q Consensus 115 ~~~yDvIVVGsG~aG~~aA~~Lae~-~G~~VlVLE~G~~ 152 (567)
+.++||||||||++|+++|++|+++ +|.+|+|||++..
T Consensus 22 ~~~~DVvIIGgGi~Gls~A~~La~~~~G~~V~vlE~~~~ 60 (460)
T TIGR03329 22 DTQADVCIVGGGFTGLWTAIMIKQQRPALDVLVLEADLC 60 (460)
T ss_pred CceeCEEEECCCHHHHHHHHHHHHhCCCCeEEEEeCCcc
Confidence 4568999999999999999999996 6899999998743
No 62
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=99.18 E-value=6.9e-10 Score=123.17 Aligned_cols=58 Identities=21% Similarity=0.246 Sum_probs=44.5
Q ss_pred hHHHHhcCCCeEEecceEEEEEEeCCCC-CCCCccEEEEEEEEe--CCEEEEEEcCcEEEEcCCCCcc
Q psy1042 321 IRPIRKKRKNLTILTEAHVTRIICDKTP-NKHKKLVAKSVEFFY--KKKLRRARAKKEVISSAGAINS 385 (567)
Q Consensus 321 L~~a~~~~~gv~I~~~t~V~~I~~d~~~-~~~~~~rv~GV~~~~--~g~~~~v~A~k~VVLAAGa~~T 385 (567)
+...+. ..+++|+.++.|++|+.++++ + +|+||.+.+ +++.+.+.|+ .||||||++..
T Consensus 132 l~~~l~-~~~~~i~~~~~v~~Ll~d~~~~G-----rV~Gv~~~~~~~g~~~~i~Ak-aVVLATGG~~~ 192 (614)
T TIGR02061 132 VAEAAK-NALGDIFERIFIVKLLLDKNTPN-----RIAGAVGFNVRANEVHVFKAK-TVIVAAGGAVN 192 (614)
T ss_pred HHHHHH-hCCCeEEcccEEEEEEecCCCCC-----eEEEEEEEEeCCCcEEEEECC-EEEECCCcccc
Confidence 333444 456899999999999986431 5 899998753 5777789994 89999999863
No 63
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=99.17 E-value=1.1e-09 Score=115.68 Aligned_cols=34 Identities=44% Similarity=0.589 Sum_probs=31.9
Q ss_pred ccEEEECCChhHHHHHHHHHhcCCCeEEEEecCCC
Q psy1042 118 FDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIE 152 (567)
Q Consensus 118 yDvIVVGsG~aG~~aA~~Lae~~G~~VlVLE~G~~ 152 (567)
|||||||||++|+++|++|++. |.+|+|||++..
T Consensus 1 ~dvvIIGaGi~G~s~A~~La~~-g~~V~l~e~~~~ 34 (380)
T TIGR01377 1 FDVIVVGAGIMGCFAAYHLAKH-GKKTLLLEQFDL 34 (380)
T ss_pred CcEEEECCCHHHHHHHHHHHHC-CCeEEEEeccCC
Confidence 7999999999999999999998 999999999754
No 64
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=99.15 E-value=8.2e-10 Score=118.15 Aligned_cols=33 Identities=18% Similarity=0.330 Sum_probs=31.2
Q ss_pred cEEEECCChhHHHHHHHHHhcCCCeEEEEecCCC
Q psy1042 119 DFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIE 152 (567)
Q Consensus 119 DvIVVGsG~aG~~aA~~Lae~~G~~VlVLE~G~~ 152 (567)
||||||||++|+++|++|++. |.+|+|||++..
T Consensus 2 ~v~IVG~Gi~Gls~A~~l~~~-g~~V~vle~~~~ 34 (416)
T PRK00711 2 RVVVLGSGVIGVTSAWYLAQA-GHEVTVIDRQPG 34 (416)
T ss_pred EEEEECCcHHHHHHHHHHHHC-CCEEEEEeCCCc
Confidence 799999999999999999998 999999999753
No 65
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=99.15 E-value=4.6e-10 Score=111.47 Aligned_cols=36 Identities=36% Similarity=0.476 Sum_probs=33.4
Q ss_pred CcccEEEECCChhHHHHHHHHHhcCCCeEEEEecCCC
Q psy1042 116 MTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIE 152 (567)
Q Consensus 116 ~~yDvIVVGsG~aG~~aA~~Lae~~G~~VlVLE~G~~ 152 (567)
.+|||||||+|++|+++|++|+++ |.+|+||||+..
T Consensus 20 ~~~DVvIVGgGpAGL~aA~~la~~-G~~V~vlEk~~~ 55 (254)
T TIGR00292 20 AESDVIIVGAGPSGLTAAYYLAKN-GLKVCVLERSLA 55 (254)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHC-CCcEEEEecCCC
Confidence 579999999999999999999999 999999998743
No 66
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=99.14 E-value=6.1e-10 Score=110.96 Aligned_cols=35 Identities=31% Similarity=0.493 Sum_probs=32.7
Q ss_pred CcccEEEECCChhHHHHHHHHHhcCCCeEEEEecCC
Q psy1042 116 MTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGI 151 (567)
Q Consensus 116 ~~yDvIVVGsG~aG~~aA~~Lae~~G~~VlVLE~G~ 151 (567)
.+|||||||+|++|+++|++|++. |++|+|||+..
T Consensus 24 ~~~DVvIVGgGpAGl~AA~~la~~-G~~V~liEk~~ 58 (257)
T PRK04176 24 LEVDVAIVGAGPSGLTAAYYLAKA-GLKVAVFERKL 58 (257)
T ss_pred ccCCEEEECccHHHHHHHHHHHhC-CCeEEEEecCC
Confidence 569999999999999999999998 99999999864
No 67
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=99.13 E-value=1.2e-09 Score=115.97 Aligned_cols=36 Identities=33% Similarity=0.502 Sum_probs=32.7
Q ss_pred cccEEEECCChhHHHHHHHHHhc-CCCeEEEEecCCC
Q psy1042 117 TFDFIIIGAGSAGCVLANRLSEI-KKWKVLLLEAGIE 152 (567)
Q Consensus 117 ~yDvIVVGsG~aG~~aA~~Lae~-~G~~VlVLE~G~~ 152 (567)
.|||||||||++|+++|++|++. +|++|+||||+..
T Consensus 2 ~~dVvIIGgGi~G~s~A~~La~~~~g~~V~llE~~~~ 38 (393)
T PRK11728 2 MYDFVIIGGGIVGLSTAMQLQERYPGARIAVLEKESG 38 (393)
T ss_pred CccEEEECCcHHHHHHHHHHHHhCCCCeEEEEeCCCc
Confidence 38999999999999999999985 6999999999753
No 68
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=99.12 E-value=1.1e-09 Score=115.11 Aligned_cols=206 Identities=20% Similarity=0.136 Sum_probs=112.0
Q ss_pred CcccEEEECCChhHHHHHHHHHhc-CCCeEEEEecCCCCCCccccCCccccccCCCCcCCcccCCCcccccCCCCCceee
Q psy1042 116 MTFDFIIIGAGSAGCVLANRLSEI-KKWKVLLLEAGIEEPFFADVPGLAPLISRSNIDWNYMTMPEPHACKARPNGRCYW 194 (567)
Q Consensus 116 ~~yDvIVVGsG~aG~~aA~~Lae~-~G~~VlVLE~G~~~~~~~~~p~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 194 (567)
.+|||||||||+.|+++|++|++. |.++|+||||-......++- . +
T Consensus 2 ~~~DvvIIGgGI~G~a~a~~Ls~~~p~~~V~llEk~~~~a~~sS~--~-----N-------------------------- 48 (429)
T COG0579 2 MDYDVVIIGGGIMGAATAYELSEYEPDLSVALLEKEDGVAQESSS--N-----N-------------------------- 48 (429)
T ss_pred CceeEEEECCcHHHHHHHHHHHHhCCCceEEEEEccCcccccccc--C-----c--------------------------
Confidence 469999999999999999999997 44999999997665322110 0 0
Q ss_pred eceeEeccccccceeEEecCC--hhhHHHHHHcCCCCCChhhHHHHHHhhccCCCCcccCCCCCCCCCCCceeeecCCCC
Q psy1042 195 ARGKVMGGSSTINYMIYARGN--AEDYDEWEAMGNEGWGYDEVLEYFKKSEDNEDKEIYHKNPEYHGKGGYQTVEWLPYA 272 (567)
Q Consensus 195 ~~g~~lGGsS~~n~~~~~r~~--~~d~~~w~~~g~~~w~~~~l~~y~~~~e~~~~~~~~~~~~~~~g~~G~l~~~~~~~~ 272 (567)
+..+.++.+..+. ..++.. .|+. .+..+.++.. . -+-..|.+.+......
T Consensus 49 --------SgviHag~~y~p~slka~l~~---~g~~-----~~~~~~kq~~----~--------~f~~~g~l~vA~~e~e 100 (429)
T COG0579 49 --------SGVIHAGLYYTPGSLKAKLCV---AGNI-----NEFAICKQLG----I--------PFINCGKLSVATGEEE 100 (429)
T ss_pred --------ccceeccccCCCcchhhHHHH---HHHH-----HHHHHHHHhC----C--------cccccCeEEEEEChHH
Confidence 0000111111111 111111 0110 1112222221 0 1112266666665555
Q ss_pred CchHHHHHHHHHhcCCC-CCCCCCC-----------Cceeeeeecc-ccCCCcccchhHHhhHHHHhcCCCeEEecceEE
Q psy1042 273 DKNLPVLIKAWKEKGYP-ERDLNAE-----------NQIGVMHLQT-TTRHGERLSTNGAFIRPIRKKRKNLTILTEAHV 339 (567)
Q Consensus 273 ~~~~~~~~~~~~~~G~~-~~~~~~~-----------~~~g~~~~~~-~~~~g~r~s~~~~~L~~a~~~~~gv~I~~~t~V 339 (567)
.+..+.+.+.+.+.|++ ....+.. ...+....+. ++-+. .....+++..+.+ .|++|.+|++|
T Consensus 101 ~~~L~~l~~~~~~ngv~~~~~ld~~~i~~~eP~l~~~~~aal~~p~~giV~~--~~~t~~l~e~a~~--~g~~i~ln~eV 176 (429)
T COG0579 101 VERLEKLYERGKANGVFDLEILDKEEIKELEPLLNEGAVAALLVPSGGIVDP--GELTRALAEEAQA--NGVELRLNTEV 176 (429)
T ss_pred HHHHHHHHHHHhhCCCcceeecCHHHHHhhCccccccceeeEEcCCCceEcH--HHHHHHHHHHHHH--cCCEEEecCee
Confidence 55566777777788877 2111110 0111111111 11111 1122334444544 69999999999
Q ss_pred EEEEeCCCCCCCCccEEEEEEEEeCCEEEEEEcCcEEEEcCCCCccHHHHHhCCCCCc
Q psy1042 340 TRIICDKTPNKHKKLVAKSVEFFYKKKLRRARAKKEVISSAGAINSPKILMLSGIGPK 397 (567)
Q Consensus 340 ~~I~~d~~~~~~~~~rv~GV~~~~~g~~~~v~A~k~VVLAAGa~~Tp~LLl~SGIG~~ 397 (567)
+.|...++ .++-+.+.. |+.. ++|+ -||.|||. .+.+|+.++|+.+.
T Consensus 177 ~~i~~~~d-------g~~~~~~~~-g~~~-~~ak-~Vin~AGl-~Ad~la~~~g~~~~ 223 (429)
T COG0579 177 TGIEKQSD-------GVFVLNTSN-GEET-LEAK-FVINAAGL-YADPLAQMAGIPED 223 (429)
T ss_pred eEEEEeCC-------ceEEEEecC-CcEE-EEee-EEEECCch-hHHHHHHHhCCCcc
Confidence 99998742 133343333 4433 9995 79999994 78999999999773
No 69
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=99.11 E-value=1.3e-09 Score=102.62 Aligned_cols=35 Identities=34% Similarity=0.561 Sum_probs=30.0
Q ss_pred CcccEEEECCChhHHHHHHHHHhcCCCeEEEEecCC
Q psy1042 116 MTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGI 151 (567)
Q Consensus 116 ~~yDvIVVGsG~aG~~aA~~Lae~~G~~VlVLE~G~ 151 (567)
.+|||+|||+|++|++||++||++ |+||+|+|+..
T Consensus 16 ~~~DV~IVGaGpaGl~aA~~La~~-g~kV~v~E~~~ 50 (230)
T PF01946_consen 16 LEYDVAIVGAGPAGLTAAYYLAKA-GLKVAVIERKL 50 (230)
T ss_dssp TEESEEEE--SHHHHHHHHHHHHH-TS-EEEEESSS
T ss_pred ccCCEEEECCChhHHHHHHHHHHC-CCeEEEEecCC
Confidence 579999999999999999999999 99999999863
No 70
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=99.10 E-value=1.8e-09 Score=117.24 Aligned_cols=35 Identities=31% Similarity=0.522 Sum_probs=32.4
Q ss_pred ccEEEECCChhHHHHHHHHHhc-CCCeEEEEecCCC
Q psy1042 118 FDFIIIGAGSAGCVLANRLSEI-KKWKVLLLEAGIE 152 (567)
Q Consensus 118 yDvIVVGsG~aG~~aA~~Lae~-~G~~VlVLE~G~~ 152 (567)
+||||||||++|+++|++|++. ||.+|+||||+..
T Consensus 1 ~DVvIIGgGI~G~a~A~~L~~~~~g~~V~VlEk~~~ 36 (483)
T TIGR01320 1 TDVVLIGAGIMSATLGVLLRELEPNWSITLIERLDA 36 (483)
T ss_pred CcEEEECchHHHHHHHHHHHHhCCCCeEEEEEcCCc
Confidence 6999999999999999999996 7999999999754
No 71
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=99.09 E-value=1.1e-09 Score=119.99 Aligned_cols=101 Identities=18% Similarity=0.124 Sum_probs=61.0
Q ss_pred HHHHHHHHhcCCCCC-CCCCC---CceeeeeeccccCCCcccch-hHHhhHHHHhcCCCeEEecceEEEEEEeCCCCCCC
Q psy1042 277 PVLIKAWKEKGYPER-DLNAE---NQIGVMHLQTTTRHGERLST-NGAFIRPIRKKRKNLTILTEAHVTRIICDKTPNKH 351 (567)
Q Consensus 277 ~~~~~~~~~~G~~~~-~~~~~---~~~g~~~~~~~~~~g~r~s~-~~~~L~~a~~~~~gv~I~~~t~V~~I~~d~~~~~~ 351 (567)
...+..+++.|+++. ...|. ...|......++..+.+... ....|.....+..+++|+.+..|++|+.++++
T Consensus 95 p~~v~~Le~~G~~f~r~~~G~~~~r~fgg~~~~rt~~~~~~tG~~ll~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~--- 171 (562)
T COG1053 95 PEAVDELEKWGVPFSRTEDGRIYQRRFGGHSKPRTCFAADKTGHELLHTLYEQLLKFSGIEIFDEYFVLDLLVDDGG--- 171 (562)
T ss_pred HHHHHHHHHhCCCcccCCCccccccccCCcCCCcceecCCCCcHHHHHHHHHHHHHhhcchhhhhhhhhhheecCCC---
Confidence 345566778888874 22221 11111111123333333221 22223333331467899999999999988532
Q ss_pred CccEEEEEEEEe--CCEEEEEEcCcEEEEcCCCCc
Q psy1042 352 KKLVAKSVEFFY--KKKLRRARAKKEVISSAGAIN 384 (567)
Q Consensus 352 ~~~rv~GV~~~~--~g~~~~v~A~k~VVLAAGa~~ 384 (567)
.|.||.... +++.+.++| |.||||+|+.+
T Consensus 172 ---~v~Gvv~~~~~~g~~~~~~a-kavilaTGG~g 202 (562)
T COG1053 172 ---GVAGVVARDLRTGELYVFRA-KAVILATGGAG 202 (562)
T ss_pred ---cEEEEEEEEecCCcEEEEec-CcEEEccCCce
Confidence 488888764 678888999 58999999998
No 72
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=99.07 E-value=1.2e-09 Score=117.44 Aligned_cols=62 Identities=13% Similarity=0.108 Sum_probs=45.8
Q ss_pred hhHHHHhcCCCeEEecceEEEEEEeCCCCCCCCccEEEEEEEEeCCEEEEEEcCcEEEEcCCCCccHHHHH
Q psy1042 320 FIRPIRKKRKNLTILTEAHVTRIICDKTPNKHKKLVAKSVEFFYKKKLRRARAKKEVISSAGAINSPKILM 390 (567)
Q Consensus 320 ~L~~a~~~~~gv~I~~~t~V~~I~~d~~~~~~~~~rv~GV~~~~~g~~~~v~A~k~VVLAAGa~~Tp~LLl 390 (567)
.|...++ +.|++|+++++|++|+.+++++ +++||....++ .++.| |.||||+|++...+-|+
T Consensus 128 ~L~~~a~-~~Gv~i~~~~~v~~l~~~~~~g-----~v~gv~~~~~~--~~i~a-k~VIlAtGG~~~n~~~~ 189 (432)
T TIGR02485 128 ALYSSAE-RLGVEIRYGIAVDRIPPEAFDG-----AHDGPLTTVGT--HRITT-QALVLAAGGLGANRDWL 189 (432)
T ss_pred HHHHHHH-HcCCEEEeCCEEEEEEecCCCC-----eEEEEEEcCCc--EEEEc-CEEEEcCCCcccCHHHH
Confidence 3444445 5899999999999998763234 79998874433 47889 48999999998766444
No 73
>PRK08401 L-aspartate oxidase; Provisional
Probab=99.07 E-value=3.2e-09 Score=115.16 Aligned_cols=33 Identities=30% Similarity=0.477 Sum_probs=31.4
Q ss_pred ccEEEECCChhHHHHHHHHHhcCCCeEEEEecCC
Q psy1042 118 FDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGI 151 (567)
Q Consensus 118 yDvIVVGsG~aG~~aA~~Lae~~G~~VlVLE~G~ 151 (567)
+||||||||.+|++||.+|++. |.+|+||||+.
T Consensus 2 ~DVvVVGaG~AGl~AAi~aae~-G~~V~liek~~ 34 (466)
T PRK08401 2 MKVGIVGGGLAGLTAAISLAKK-GFDVTIIGPGI 34 (466)
T ss_pred CeEEEECccHHHHHHHHHHHHC-CCeEEEEeCCC
Confidence 7999999999999999999998 99999999974
No 74
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=99.06 E-value=1.6e-09 Score=101.38 Aligned_cols=34 Identities=35% Similarity=0.509 Sum_probs=31.9
Q ss_pred CcccEEEECCChhHHHHHHHHHhcCCCeEEEEecC
Q psy1042 116 MTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAG 150 (567)
Q Consensus 116 ~~yDvIVVGsG~aG~~aA~~Lae~~G~~VlVLE~G 150 (567)
.+-||||||+|++|++||++||++ |++|+|+||.
T Consensus 29 ~esDViIVGaGPsGLtAAyyLAk~-g~kV~i~E~~ 62 (262)
T COG1635 29 LESDVIIVGAGPSGLTAAYYLAKA-GLKVAIFERK 62 (262)
T ss_pred hhccEEEECcCcchHHHHHHHHhC-CceEEEEEee
Confidence 467999999999999999999999 9999999974
No 75
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=99.05 E-value=3.5e-09 Score=111.28 Aligned_cols=34 Identities=29% Similarity=0.433 Sum_probs=31.8
Q ss_pred ccEEEECCChhHHHHHHHHHhcCCCeEEEEecCCC
Q psy1042 118 FDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIE 152 (567)
Q Consensus 118 yDvIVVGsG~aG~~aA~~Lae~~G~~VlVLE~G~~ 152 (567)
|||||||||++|+++|++|++. |.+|+|||++..
T Consensus 1 ~dv~IIG~Gi~G~s~A~~L~~~-G~~V~vle~~~~ 34 (365)
T TIGR03364 1 YDLIIVGAGILGLAHAYAAARR-GLSVTVIERSSR 34 (365)
T ss_pred CCEEEECCCHHHHHHHHHHHHC-CCeEEEEeCCCC
Confidence 6999999999999999999998 999999999743
No 76
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=99.04 E-value=1.4e-08 Score=110.57 Aligned_cols=37 Identities=24% Similarity=0.470 Sum_probs=33.5
Q ss_pred CcccEEEECCChhHHHHHHHHHhc-CCCeEEEEecCCC
Q psy1042 116 MTFDFIIIGAGSAGCVLANRLSEI-KKWKVLLLEAGIE 152 (567)
Q Consensus 116 ~~yDvIVVGsG~aG~~aA~~Lae~-~G~~VlVLE~G~~ 152 (567)
..|||||||||+.|+++|++|++. +|.+|+||||...
T Consensus 4 ~~~DVvIIGgGIiG~slA~~L~~~~~g~~V~VlEk~~~ 41 (494)
T PRK05257 4 SKTDVVLIGGGIMSATLGTLLKELEPEWSITMFERLDG 41 (494)
T ss_pred ccceEEEECcHHHHHHHHHHHHHhCCCCeEEEEEcCCc
Confidence 468999999999999999999985 6899999999754
No 77
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=99.02 E-value=8.8e-09 Score=115.32 Aligned_cols=59 Identities=19% Similarity=0.179 Sum_probs=46.3
Q ss_pred CCCeEEecceEEEEEEeCCCCCCCCccEEEEEEEEe--CCEEEEEEcCcEEEEcCCCCccHHHHHhCC
Q psy1042 328 RKNLTILTEAHVTRIICDKTPNKHKKLVAKSVEFFY--KKKLRRARAKKEVISSAGAINSPKILMLSG 393 (567)
Q Consensus 328 ~~gv~I~~~t~V~~I~~d~~~~~~~~~rv~GV~~~~--~g~~~~v~A~k~VVLAAGa~~Tp~LLl~SG 393 (567)
+.|++|+.+++|++|..++.++ +++||.+.+ +++.++|+|+ .||+|||++ +.+|+...|
T Consensus 244 ~~Ga~i~~~~~V~~l~~~~~~g-----~v~gV~v~d~~tg~~~~i~a~-~VVnAaGaw-s~~l~~~~g 304 (627)
T PLN02464 244 LAGAAVLNYAEVVSLIKDESTG-----RIVGARVRDNLTGKEFDVYAK-VVVNAAGPF-CDEVRKMAD 304 (627)
T ss_pred hCCcEEEeccEEEEEEEecCCC-----cEEEEEEEECCCCcEEEEEeC-EEEECCCHh-HHHHHHhcc
Confidence 5799999999999998763124 788998864 4555679995 799999974 788887765
No 78
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=99.01 E-value=2.4e-08 Score=108.12 Aligned_cols=35 Identities=23% Similarity=0.463 Sum_probs=32.5
Q ss_pred CcccEEEECCChhHHHHHHHHHhc-CCCeEEEEecC
Q psy1042 116 MTFDFIIIGAGSAGCVLANRLSEI-KKWKVLLLEAG 150 (567)
Q Consensus 116 ~~yDvIVVGsG~aG~~aA~~Lae~-~G~~VlVLE~G 150 (567)
..+||||||||++|+++|+.|++. ||.+|+||||-
T Consensus 5 ~~~DvvIIGgGI~G~sla~~L~~~~~~~~V~vlEr~ 40 (497)
T PRK13339 5 ESKDVVLVGAGILSTTFGVLLKELDPDWNIEVVERL 40 (497)
T ss_pred ccCCEEEECchHHHHHHHHHHHhCCCCCeEEEEEcC
Confidence 568999999999999999999996 79999999993
No 79
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=99.01 E-value=1.4e-08 Score=108.87 Aligned_cols=74 Identities=23% Similarity=0.209 Sum_probs=58.1
Q ss_pred CCCeEEecceEEEEEEeCCCCCCCCccEEEEEEEEe--CCEEEEEEcCcEEEEcCCCCccHHHHHhCCCCCc---chhhh
Q psy1042 328 RKNLTILTEAHVTRIICDKTPNKHKKLVAKSVEFFY--KKKLRRARAKKEVISSAGAINSPKILMLSGIGPK---DHLTS 402 (567)
Q Consensus 328 ~~gv~I~~~t~V~~I~~d~~~~~~~~~rv~GV~~~~--~g~~~~v~A~k~VVLAAGa~~Tp~LLl~SGIG~~---~~L~~ 402 (567)
..|.+|++.++|+.++.+ + .+.||++.+ +|+++.|+|+ .||.|||. ++-+|+...+..+. .....
T Consensus 176 ~~Ga~il~~~~v~~~~re--~------~v~gV~~~D~~tg~~~~ira~-~VVNAaGp-W~d~i~~~~~~~~~~~~~vr~s 245 (532)
T COG0578 176 EHGAEILTYTRVESLRRE--G------GVWGVEVEDRETGETYEIRAR-AVVNAAGP-WVDEILEMAGLEQSPHIGVRPS 245 (532)
T ss_pred hcccchhhcceeeeeeec--C------CEEEEEEEecCCCcEEEEEcC-EEEECCCc-cHHHHHHhhcccCCCCccceec
Confidence 489999999999999987 3 389999986 5889999995 79999996 57888888876553 23344
Q ss_pred cCCcccccC
Q psy1042 403 LNIKTLVDL 411 (567)
Q Consensus 403 ~gI~v~~~l 411 (567)
.|+-++++-
T Consensus 246 kGsHlVv~~ 254 (532)
T COG0578 246 KGSHLVVDK 254 (532)
T ss_pred cceEEEecc
Confidence 676666654
No 80
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=98.98 E-value=1.7e-08 Score=106.44 Aligned_cols=35 Identities=31% Similarity=0.450 Sum_probs=32.9
Q ss_pred cccEEEECCChhHHHHHHHHHhcCCCeEEEEecCCC
Q psy1042 117 TFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIE 152 (567)
Q Consensus 117 ~yDvIVVGsG~aG~~aA~~Lae~~G~~VlVLE~G~~ 152 (567)
+|||||||||++|+++|++|++. |.+|+||||+..
T Consensus 3 ~~dv~IIGgGi~G~s~A~~L~~~-g~~V~lie~~~~ 37 (376)
T PRK11259 3 RYDVIVIGLGSMGSAAGYYLARR-GLRVLGLDRFMP 37 (376)
T ss_pred cccEEEECCCHHHHHHHHHHHHC-CCeEEEEecccC
Confidence 58999999999999999999999 999999999853
No 81
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=98.96 E-value=3.8e-09 Score=110.18 Aligned_cols=100 Identities=20% Similarity=0.230 Sum_probs=62.0
Q ss_pred HHHHHHHHhcCCCCC-CCCCCC---ceeeeeeccccC-CCcccchhHHhh-HHHHhcCCCeEEecceEEEEEEeCCCCCC
Q psy1042 277 PVLIKAWKEKGYPER-DLNAEN---QIGVMHLQTTTR-HGERLSTNGAFI-RPIRKKRKNLTILTEAHVTRIICDKTPNK 350 (567)
Q Consensus 277 ~~~~~~~~~~G~~~~-~~~~~~---~~g~~~~~~~~~-~g~r~s~~~~~L-~~a~~~~~gv~I~~~t~V~~I~~d~~~~~ 350 (567)
...++++.++|++++ +..+.- ..|.+..+.... .+.........| ..+.+ ++|++|+.++.+.+|+.++ +.
T Consensus 90 ~~ai~~Li~~Gv~FDr~~~g~~~lt~EggHS~rRIlH~~~~TG~~I~~~L~~~v~~-~p~I~v~e~~~a~~li~~~-~~- 166 (518)
T COG0029 90 PEAIEWLIDLGVPFDRDEDGRLHLTREGGHSRRRILHAADATGKEIMTALLKKVRN-RPNITVLEGAEALDLIIED-GI- 166 (518)
T ss_pred HHHHHHHHHcCCCCcCCCCCceeeeeecccCCceEEEecCCccHHHHHHHHHHHhc-CCCcEEEecchhhhhhhcC-Cc-
Confidence 456777888999985 332311 112111111111 121122233333 33444 6999999999999999985 22
Q ss_pred CCccEEEEEEEEeCC-EEEEEEcCcEEEEcCCCCc
Q psy1042 351 HKKLVAKSVEFFYKK-KLRRARAKKEVISSAGAIN 384 (567)
Q Consensus 351 ~~~~rv~GV~~~~~g-~~~~v~A~k~VVLAAGa~~ 384 (567)
.+.||.+...+ +..+++|+ .||||+|+++
T Consensus 167 ----~~~Gv~~~~~~~~~~~~~a~-~vVLATGG~g 196 (518)
T COG0029 167 ----GVAGVLVLNRNGELGTFRAK-AVVLATGGLG 196 (518)
T ss_pred ----eEeEEEEecCCCeEEEEecC-eEEEecCCCc
Confidence 45699987654 57889995 7999999875
No 82
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=98.96 E-value=1.1e-08 Score=109.91 Aligned_cols=36 Identities=44% Similarity=0.535 Sum_probs=33.5
Q ss_pred CcccEEEECCChhHHHHHHHHHhcCCCeEEEEecCCC
Q psy1042 116 MTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIE 152 (567)
Q Consensus 116 ~~yDvIVVGsG~aG~~aA~~Lae~~G~~VlVLE~G~~ 152 (567)
..|||||||||++|+++|+.||++ |++|+||||+..
T Consensus 4 ~~~DViIVGaGpAG~~aA~~La~~-G~~V~llEr~~~ 39 (428)
T PRK10157 4 DIFDAIIVGAGLAGSVAALVLARE-GAQVLVIERGNS 39 (428)
T ss_pred ccCcEEEECcCHHHHHHHHHHHhC-CCeEEEEEcCCC
Confidence 459999999999999999999999 999999999854
No 83
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=98.93 E-value=7e-10 Score=119.01 Aligned_cols=63 Identities=21% Similarity=0.263 Sum_probs=0.0
Q ss_pred hhHHHHhcCCCeEEecceEEEEEEeCCCCCCCCccEEEEEEEEeCCEEEEEEcCcEEEEcCCCCccHHHHHhCCC
Q psy1042 320 FIRPIRKKRKNLTILTEAHVTRIICDKTPNKHKKLVAKSVEFFYKKKLRRARAKKEVISSAGAINSPKILMLSGI 394 (567)
Q Consensus 320 ~L~~a~~~~~gv~I~~~t~V~~I~~d~~~~~~~~~rv~GV~~~~~g~~~~v~A~k~VVLAAGa~~Tp~LLl~SGI 394 (567)
.|...+. +.|++|+++|.|..++.+ ++ +|+||.+...+...+|+|+ .||-|+| .-.|+.++|+
T Consensus 95 ~l~~~l~-e~gv~v~~~t~v~~v~~~--~~-----~i~~V~~~~~~g~~~i~A~-~~IDaTG---~g~l~~~aG~ 157 (428)
T PF12831_consen 95 VLDEMLA-EAGVEVLLGTRVVDVIRD--GG-----RITGVIVETKSGRKEIRAK-VFIDATG---DGDLAALAGA 157 (428)
T ss_dssp ---------------------------------------------------------------------------
T ss_pred ccccccc-cccccccccccccccccc--cc-----ccccccccccccccccccc-ccccccc---cccccccccc
Confidence 3444445 689999999999999987 55 8999999764347789995 7999999 3577888875
No 84
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=98.91 E-value=3.4e-08 Score=108.29 Aligned_cols=38 Identities=32% Similarity=0.420 Sum_probs=34.8
Q ss_pred CCCcccEEEECCChhHHHHHHHHHhcCCCeEEEEecCCC
Q psy1042 114 DDMTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIE 152 (567)
Q Consensus 114 ~~~~yDvIVVGsG~aG~~aA~~Lae~~G~~VlVLE~G~~ 152 (567)
+..+|||||||||++|+++|+.||+. |++|+||||+..
T Consensus 3 ~~~~~DVvIIGGGi~G~~~A~~la~r-G~~V~LlEk~d~ 40 (502)
T PRK13369 3 EPETYDLFVIGGGINGAGIARDAAGR-GLKVLLCEKDDL 40 (502)
T ss_pred CCcccCEEEECCCHHHHHHHHHHHhC-CCcEEEEECCCC
Confidence 34669999999999999999999999 999999999854
No 85
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=98.91 E-value=7.1e-08 Score=105.80 Aligned_cols=38 Identities=29% Similarity=0.366 Sum_probs=34.7
Q ss_pred CCcccEEEECCChhHHHHHHHHHhcCCCeEEEEecCCCC
Q psy1042 115 DMTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIEE 153 (567)
Q Consensus 115 ~~~yDvIVVGsG~aG~~aA~~Lae~~G~~VlVLE~G~~~ 153 (567)
..+|||||||||++|+++|+.||+. |++|+||||++..
T Consensus 4 ~~~~DVvIIGGGi~G~~~A~~la~r-Gl~V~LvEk~d~~ 41 (508)
T PRK12266 4 METYDLLVIGGGINGAGIARDAAGR-GLSVLLCEQDDLA 41 (508)
T ss_pred CCcCCEEEECcCHHHHHHHHHHHHC-CCeEEEEecCCCC
Confidence 4579999999999999999999999 9999999997543
No 86
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=98.89 E-value=2.3e-08 Score=109.47 Aligned_cols=35 Identities=34% Similarity=0.603 Sum_probs=32.5
Q ss_pred CcccEEEECCChhHHHHHHHHHhcCCCeEEEEecCC
Q psy1042 116 MTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGI 151 (567)
Q Consensus 116 ~~yDvIVVGsG~aG~~aA~~Lae~~G~~VlVLE~G~ 151 (567)
..|||||||||+||+.||..||+. |.+|+|||+..
T Consensus 3 ~~yDVIVVGGGpAG~eAA~~aAR~-G~kV~LiE~~~ 37 (618)
T PRK05192 3 EEYDVIVVGGGHAGCEAALAAARM-GAKTLLLTHNL 37 (618)
T ss_pred ccceEEEECchHHHHHHHHHHHHc-CCcEEEEeccc
Confidence 469999999999999999999998 99999999763
No 87
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=98.86 E-value=4.9e-08 Score=105.84 Aligned_cols=72 Identities=17% Similarity=0.103 Sum_probs=51.9
Q ss_pred hHHhhHHHHhcCCCeEEecceEEEEEEeCCCC--CCCCccEEEEEEEEeC--CEEEEEEcCcEEEEcCCCCccHHHHHhC
Q psy1042 317 NGAFIRPIRKKRKNLTILTEAHVTRIICDKTP--NKHKKLVAKSVEFFYK--KKLRRARAKKEVISSAGAINSPKILMLS 392 (567)
Q Consensus 317 ~~~~L~~a~~~~~gv~I~~~t~V~~I~~d~~~--~~~~~~rv~GV~~~~~--g~~~~v~A~k~VVLAAGa~~Tp~LLl~S 392 (567)
...-|...++ +.|++|+++|+|++|+.+.++ + +|+||++..+ ++...+.+++.||+++|++.. .+
T Consensus 228 LV~PL~~~Le-~~GV~f~~~t~VtdL~~~~d~~~~-----~VtgI~~~~~~~~~~I~l~~~DlVivTnGs~t~-----ns 296 (576)
T PRK13977 228 LVLPLIKYLE-DHGVDFQYGTKVTDIDFDITGGKK-----TATAIHLTRNGKEETIDLTEDDLVFVTNGSITE-----SS 296 (576)
T ss_pred HHHHHHHHHH-hCCCEEEeCCEEEEEEEcCCCCce-----EEEEEEEEeCCceeEEEecCCCEEEEeCCcCcc-----cc
Confidence 3334445556 689999999999999986222 4 8999999863 344556777899999999863 34
Q ss_pred CCCCcch
Q psy1042 393 GIGPKDH 399 (567)
Q Consensus 393 GIG~~~~ 399 (567)
..|+.+.
T Consensus 297 ~~G~~~~ 303 (576)
T PRK13977 297 TYGDMDT 303 (576)
T ss_pred ccCCCCC
Confidence 5565443
No 88
>PRK10015 oxidoreductase; Provisional
Probab=98.86 E-value=2.8e-08 Score=106.71 Aligned_cols=36 Identities=39% Similarity=0.558 Sum_probs=33.6
Q ss_pred CcccEEEECCChhHHHHHHHHHhcCCCeEEEEecCCC
Q psy1042 116 MTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIE 152 (567)
Q Consensus 116 ~~yDvIVVGsG~aG~~aA~~Lae~~G~~VlVLE~G~~ 152 (567)
.+|||||||||++|++||+.||++ |++|+||||+..
T Consensus 4 ~~~DViIVGgGpAG~~aA~~LA~~-G~~VlliEr~~~ 39 (429)
T PRK10015 4 DKFDAIVVGAGVAGSVAALVMARA-GLDVLVIERGDS 39 (429)
T ss_pred cccCEEEECcCHHHHHHHHHHHhC-CCeEEEEecCCC
Confidence 469999999999999999999998 999999999854
No 89
>KOG2820|consensus
Probab=98.83 E-value=3.9e-08 Score=97.63 Aligned_cols=65 Identities=22% Similarity=0.133 Sum_probs=46.3
Q ss_pred hhHHHHhcCCCeEEecceEEEEEEeCCCCCCCCccEEEEEEEEeCCEEEEEEcCcEEEEcCCCCccHHHHHhC-CCC
Q psy1042 320 FIRPIRKKRKNLTILTEAHVTRIICDKTPNKHKKLVAKSVEFFYKKKLRRARAKKEVISSAGAINSPKILMLS-GIG 395 (567)
Q Consensus 320 ~L~~a~~~~~gv~I~~~t~V~~I~~d~~~~~~~~~rv~GV~~~~~g~~~~v~A~k~VVLAAGa~~Tp~LLl~S-GIG 395 (567)
.+...++ ..|+.++.+..|..+.+.+..+ ..++|.+.++ ..+.|+ .+|+++|++ +.+||-.| +||
T Consensus 158 ~~~~~~~-~~G~i~~dg~~v~~~~~~~e~~-----~~v~V~Tt~g---s~Y~ak-kiI~t~GaW-i~klL~~~~~~~ 223 (399)
T KOG2820|consen 158 ALQDKAR-ELGVIFRDGEKVKFIKFVDEEG-----NHVSVQTTDG---SIYHAK-KIIFTVGAW-INKLLPTSLAIG 223 (399)
T ss_pred HHHHHHH-HcCeEEecCcceeeEeeccCCC-----ceeEEEeccC---Ceeecc-eEEEEecHH-HHhhcCcccccC
Confidence 3444444 6899999999999998765444 5667776655 147885 599999985 67777664 444
No 90
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=98.80 E-value=3.9e-08 Score=97.16 Aligned_cols=36 Identities=42% Similarity=0.591 Sum_probs=33.4
Q ss_pred CcccEEEECCChhHHHHHHHHHhcCCCeEEEEecCCC
Q psy1042 116 MTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIE 152 (567)
Q Consensus 116 ~~yDvIVVGsG~aG~~aA~~Lae~~G~~VlVLE~G~~ 152 (567)
.++||||||+|.+|+++|.+||++ |.+|+|||+.+.
T Consensus 4 ~~~dvivvgaglaglvaa~elA~a-G~~V~ildQEge 39 (552)
T COG3573 4 LTADVIVVGAGLAGLVAAAELADA-GKRVLILDQEGE 39 (552)
T ss_pred ccccEEEECccHHHHHHHHHHHhc-CceEEEEccccc
Confidence 579999999999999999999999 999999998654
No 91
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=98.80 E-value=8.7e-08 Score=102.56 Aligned_cols=41 Identities=32% Similarity=0.348 Sum_probs=37.3
Q ss_pred CCCcccEEEECCChhHHHHHHHHHhcCCCeEEEEecCCCCCC
Q psy1042 114 DDMTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIEEPF 155 (567)
Q Consensus 114 ~~~~yDvIVVGsG~aG~~aA~~Lae~~G~~VlVLE~G~~~~~ 155 (567)
|+++|||||||+|.+||++|..|+++ |++||+||+....++
T Consensus 1 m~~~~DViViGtGL~e~ilAa~Ls~~-GkkVLhlD~n~~yGG 41 (443)
T PTZ00363 1 MDETYDVIVCGTGLKECILSGLLSVN-GKKVLHMDRNPYYGG 41 (443)
T ss_pred CCCcceEEEECCChHHHHHHhhhhhC-CCEEEEecCCCCcCc
Confidence 35679999999999999999999999 999999999987753
No 92
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=98.79 E-value=3.8e-08 Score=104.69 Aligned_cols=37 Identities=46% Similarity=0.749 Sum_probs=34.4
Q ss_pred CcccEEEECCChhHHHHHHHHHhcCCCeEEEEecCCCC
Q psy1042 116 MTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIEE 153 (567)
Q Consensus 116 ~~yDvIVVGsG~aG~~aA~~Lae~~G~~VlVLE~G~~~ 153 (567)
.+|||||||+|+||++||++||++ |++|+||||+...
T Consensus 2 ~~~DVvIVGaGPAGs~aA~~la~~-G~~VlvlEk~~~~ 38 (396)
T COG0644 2 MEYDVVIVGAGPAGSSAARRLAKA-GLDVLVLEKGSEP 38 (396)
T ss_pred ceeeEEEECCchHHHHHHHHHHHc-CCeEEEEecCCCC
Confidence 469999999999999999999999 9999999998664
No 93
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=98.78 E-value=3.1e-08 Score=112.27 Aligned_cols=34 Identities=44% Similarity=0.574 Sum_probs=32.3
Q ss_pred cccEEEECCChhHHHHHHHHHhcCCCeEEEEecCC
Q psy1042 117 TFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGI 151 (567)
Q Consensus 117 ~yDvIVVGsG~aG~~aA~~Lae~~G~~VlVLE~G~ 151 (567)
.+||||||||++|+++|++|++. |++|+|||++.
T Consensus 260 ~~dVvIIGaGIaG~s~A~~La~~-G~~V~VlE~~~ 293 (662)
T PRK01747 260 ARDAAIIGGGIAGAALALALARR-GWQVTLYEADE 293 (662)
T ss_pred CCCEEEECccHHHHHHHHHHHHC-CCeEEEEecCC
Confidence 48999999999999999999999 99999999974
No 94
>KOG0042|consensus
Probab=98.76 E-value=5.5e-09 Score=109.12 Aligned_cols=82 Identities=22% Similarity=0.227 Sum_probs=57.5
Q ss_pred CceeeeeeccccCCCcccchhHHhhHHHHhcCCCeEEecceEEEEEEeCCCCCCCCccEEEEEEEEe--CCEEEEEEcCc
Q psy1042 297 NQIGVMHLQTTTRHGERLSTNGAFIRPIRKKRKNLTILTEAHVTRIICDKTPNKHKKLVAKSVEFFY--KKKLRRARAKK 374 (567)
Q Consensus 297 ~~~g~~~~~~~~~~g~r~s~~~~~L~~a~~~~~gv~I~~~t~V~~I~~d~~~~~~~~~rv~GV~~~~--~g~~~~v~A~k 374 (567)
+.+|...+.-+..+.+|.....+ |. |. +.|++++...+|.+|+.++++ ++.|+++.+ .|+++.|+| |
T Consensus 209 ~L~Ga~VYyDGQ~nDaRmnl~vA-lT-A~--r~GA~v~Nh~ev~~Llkd~~~------kv~Ga~~rD~iTG~e~~I~A-k 277 (680)
T KOG0042|consen 209 NLKGAMVYYDGQHNDARMNLAVA-LT-AA--RNGATVLNHVEVVSLLKDKDG------KVIGARARDHITGKEYEIRA-K 277 (680)
T ss_pred CceeEEEEecCCCchHHHHHHHH-HH-HH--hcchhhhhHHHHHHHhhCCCC------ceeeeEEEEeecCcEEEEEE-E
Confidence 34454444333344455544432 22 23 589999999999999998644 799999987 599999999 5
Q ss_pred EEEEcCCCCccHHHHH
Q psy1042 375 EVISSAGAINSPKILM 390 (567)
Q Consensus 375 ~VVLAAGa~~Tp~LLl 390 (567)
.||-|||.|. ..|++
T Consensus 278 ~VVNATGpfs-DsIr~ 292 (680)
T KOG0042|consen 278 VVVNATGPFS-DSIRK 292 (680)
T ss_pred EEEeCCCCcc-HHHHh
Confidence 8999999874 44543
No 95
>KOG2415|consensus
Probab=98.72 E-value=6.5e-08 Score=98.21 Aligned_cols=84 Identities=12% Similarity=0.082 Sum_probs=58.7
Q ss_pred cchhHHhhHHHHhcCCCeEEecceEEEEEEeCCCCCCCCccEEEEEEEEeC-----C-------EEEEEEcCcEEEEcCC
Q psy1042 314 LSTNGAFIRPIRKKRKNLTILTEAHVTRIICDKTPNKHKKLVAKSVEFFYK-----K-------KLRRARAKKEVISSAG 381 (567)
Q Consensus 314 ~s~~~~~L~~a~~~~~gv~I~~~t~V~~I~~d~~~~~~~~~rv~GV~~~~~-----g-------~~~~v~A~k~VVLAAG 381 (567)
......||...++ ..|++|..+..+.+|++++++ .|.||.+.+- | +-..++| |..|+|-|
T Consensus 182 L~~~v~wLg~kAE-e~GvEiyPg~aaSevly~edg------sVkGiaT~D~GI~k~G~pKd~FerGme~ha-k~TifAEG 253 (621)
T KOG2415|consen 182 LGQLVRWLGEKAE-ELGVEIYPGFAASEVLYDEDG------SVKGIATNDVGISKDGAPKDTFERGMEFHA-KVTIFAEG 253 (621)
T ss_pred HHHHHHHHHHHHH-hhCceeccccchhheeEcCCC------cEeeEeeccccccCCCCccccccccceecc-eeEEEecc
Confidence 3445667877666 789999999999999999765 6999987642 2 1246889 47888887
Q ss_pred CCc--cHHHHHhCCCCCcchhhhcCC
Q psy1042 382 AIN--SPKILMLSGIGPKDHLTSLNI 405 (567)
Q Consensus 382 a~~--Tp~LLl~SGIG~~~~L~~~gI 405 (567)
.-+ |-+|+..=++-...+.+..||
T Consensus 254 c~G~Lskqi~kkf~Lr~n~e~qtYgl 279 (621)
T KOG2415|consen 254 CHGSLSKQIIKKFDLRENCEPQTYGL 279 (621)
T ss_pred ccchhHHHHHHHhCcccCCCcceecc
Confidence 654 467776665544444445444
No 96
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=98.70 E-value=7.2e-08 Score=100.29 Aligned_cols=54 Identities=24% Similarity=0.286 Sum_probs=38.6
Q ss_pred hhHHHHhcCCCeEEecceEEEEEEeCCCCCCCCccEEEEEEEEeCCEEEEEEcCcEEEEcCCCCcc
Q psy1042 320 FIRPIRKKRKNLTILTEAHVTRIICDKTPNKHKKLVAKSVEFFYKKKLRRARAKKEVISSAGAINS 385 (567)
Q Consensus 320 ~L~~a~~~~~gv~I~~~t~V~~I~~d~~~~~~~~~rv~GV~~~~~g~~~~v~A~k~VVLAAGa~~T 385 (567)
++...+...+|++|+ +.+|+.|+.+ ++ +|.||.+..+ . .+.|+ .||||+|.|..
T Consensus 100 ~~~~~l~~~~nl~i~-~~~V~~l~~e--~~-----~v~GV~~~~g-~--~~~a~-~vVlaTGtfl~ 153 (392)
T PF01134_consen 100 AMREKLESHPNLTII-QGEVTDLIVE--NG-----KVKGVVTKDG-E--EIEAD-AVVLATGTFLN 153 (392)
T ss_dssp HHHHHHHTSTTEEEE-ES-EEEEEEC--TT-----EEEEEEETTS-E--EEEEC-EEEE-TTTGBT
T ss_pred HHHHHHhcCCCeEEE-EcccceEEec--CC-----eEEEEEeCCC-C--EEecC-EEEEecccccC
Confidence 444444425899997 6799999988 45 8999988654 3 68895 79999999443
No 97
>PRK06185 hypothetical protein; Provisional
Probab=98.70 E-value=4.2e-07 Score=97.03 Aligned_cols=36 Identities=33% Similarity=0.361 Sum_probs=33.4
Q ss_pred CCcccEEEECCChhHHHHHHHHHhcCCCeEEEEecCC
Q psy1042 115 DMTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGI 151 (567)
Q Consensus 115 ~~~yDvIVVGsG~aG~~aA~~Lae~~G~~VlVLE~G~ 151 (567)
..+|||||||||++|+++|..|++. |++|+|||+.+
T Consensus 4 ~~~~dV~IvGgG~~Gl~~A~~La~~-G~~v~liE~~~ 39 (407)
T PRK06185 4 VETTDCCIVGGGPAGMMLGLLLARA-GVDVTVLEKHA 39 (407)
T ss_pred cccccEEEECCCHHHHHHHHHHHhC-CCcEEEEecCC
Confidence 4679999999999999999999998 99999999864
No 98
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=98.69 E-value=2.9e-07 Score=97.33 Aligned_cols=37 Identities=41% Similarity=0.497 Sum_probs=34.0
Q ss_pred CcccEEEECCChhHHHHHHHHHhcCCCeEEEEecCCCC
Q psy1042 116 MTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIEE 153 (567)
Q Consensus 116 ~~yDvIVVGsG~aG~~aA~~Lae~~G~~VlVLE~G~~~ 153 (567)
..+||||||||++|+++|++|++. |.+|+|+|++...
T Consensus 3 ~~~~vvVIGgGi~Gls~A~~La~~-G~~V~vie~~~~~ 39 (387)
T COG0665 3 MKMDVVIIGGGIVGLSAAYYLAER-GADVTVLEAGEAG 39 (387)
T ss_pred CcceEEEECCcHHHHHHHHHHHHc-CCEEEEEecCccC
Confidence 568999999999999999999999 9999999987653
No 99
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.69 E-value=8.4e-07 Score=94.92 Aligned_cols=38 Identities=32% Similarity=0.538 Sum_probs=34.5
Q ss_pred CCCcccEEEECCChhHHHHHHHHHhcCCCeEEEEecCCC
Q psy1042 114 DDMTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIE 152 (567)
Q Consensus 114 ~~~~yDvIVVGsG~aG~~aA~~Lae~~G~~VlVLE~G~~ 152 (567)
++.+|||||||||++|+++|..|++. |++|+||||.+.
T Consensus 15 ~~~~~dV~IvGaG~aGl~~A~~L~~~-G~~v~v~E~~~~ 52 (415)
T PRK07364 15 RSLTYDVAIVGGGIVGLTLAAALKDS-GLRIALIEAQPA 52 (415)
T ss_pred CccccCEEEECcCHHHHHHHHHHhcC-CCEEEEEecCCc
Confidence 34579999999999999999999999 999999999754
No 100
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=98.67 E-value=4e-07 Score=95.04 Aligned_cols=67 Identities=25% Similarity=0.271 Sum_probs=50.0
Q ss_pred hhHHHHhcCCCeEEecceEEEEEEeCCCCCCCCccEEEEEEEE--eCCEEEEEEcCcEEEEcCCCCccHHHHHhCCCCC
Q psy1042 320 FIRPIRKKRKNLTILTEAHVTRIICDKTPNKHKKLVAKSVEFF--YKKKLRRARAKKEVISSAGAINSPKILMLSGIGP 396 (567)
Q Consensus 320 ~L~~a~~~~~gv~I~~~t~V~~I~~d~~~~~~~~~rv~GV~~~--~~g~~~~v~A~k~VVLAAGa~~Tp~LLl~SGIG~ 396 (567)
++..+.+ ++|++|.++++|+.|....++. .-|.+. ..+...+|+|+ -|+++||+ ++=.||+.|||..
T Consensus 187 l~~~l~~-~~~~~~~~~~eV~~i~r~~dg~-------W~v~~~~~~~~~~~~v~a~-FVfvGAGG-~aL~LLqksgi~e 255 (488)
T PF06039_consen 187 LVEYLQK-QKGFELHLNHEVTDIKRNGDGR-------WEVKVKDLKTGEKREVRAK-FVFVGAGG-GALPLLQKSGIPE 255 (488)
T ss_pred HHHHHHh-CCCcEEEecCEeCeeEECCCCC-------EEEEEEecCCCCeEEEECC-EEEECCch-HhHHHHHHcCChh
Confidence 4444444 6799999999999999875443 233333 35667799995 89999998 5788899999853
No 101
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=98.66 E-value=2.6e-07 Score=89.32 Aligned_cols=34 Identities=35% Similarity=0.433 Sum_probs=31.6
Q ss_pred cEEEECCChhHHHHHHHHHhcCCCeEEEEecCCCC
Q psy1042 119 DFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIEE 153 (567)
Q Consensus 119 DvIVVGsG~aG~~aA~~Lae~~G~~VlVLE~G~~~ 153 (567)
+++|||+|++|++||+.|.++ |.+|+|+|||.-.
T Consensus 3 siaIVGaGiAGl~aA~~L~~a-G~~vtV~eKg~Gv 36 (331)
T COG3380 3 SIAIVGAGIAGLAAAYALREA-GREVTVFEKGRGV 36 (331)
T ss_pred cEEEEccchHHHHHHHHHHhc-CcEEEEEEcCCCc
Confidence 699999999999999999999 9999999998543
No 102
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.59 E-value=2.2e-07 Score=101.42 Aligned_cols=39 Identities=31% Similarity=0.341 Sum_probs=35.4
Q ss_pred CcccEEEECCChhHHHHHHHHHhcCCCeEEEEecCCCCCC
Q psy1042 116 MTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIEEPF 155 (567)
Q Consensus 116 ~~yDvIVVGsG~aG~~aA~~Lae~~G~~VlVLE~G~~~~~ 155 (567)
..|||||||||.+|++||..||++ |++|+||||....+.
T Consensus 2 ~~~dvvVIGaG~~GL~aAa~LA~~-G~~V~VlE~~~~~GG 40 (487)
T COG1233 2 PMYDVVVIGAGLNGLAAAALLARA-GLKVTVLEKNDRVGG 40 (487)
T ss_pred CCccEEEECCChhHHHHHHHHHhC-CCEEEEEEecCCCCc
Confidence 358999999999999999999999 999999999877643
No 103
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=98.58 E-value=5e-07 Score=96.17 Aligned_cols=31 Identities=42% Similarity=0.518 Sum_probs=29.2
Q ss_pred EEECCChhHHHHHHHHHhcCCCeEEEEecCCC
Q psy1042 121 IIIGAGSAGCVLANRLSEIKKWKVLLLEAGIE 152 (567)
Q Consensus 121 IVVGsG~aG~~aA~~Lae~~G~~VlVLE~G~~ 152 (567)
||||||++|+++|.+|++. |++|+||||++.
T Consensus 1 vIIGgG~aGl~aAi~aa~~-G~~V~llEk~~~ 31 (400)
T TIGR00275 1 IIIGGGAAGLMAAITAARE-GLSVLLLEKNKK 31 (400)
T ss_pred CEEEEeHHHHHHHHHHHhc-CCcEEEEecCcc
Confidence 6999999999999999998 999999999765
No 104
>KOG2404|consensus
Probab=98.58 E-value=2.4e-07 Score=91.31 Aligned_cols=48 Identities=17% Similarity=0.269 Sum_probs=40.0
Q ss_pred CeEEecceEEEEEEeCCCCCCCCccEEEEEEEEe-CCEEEEEEcCcEEEEcCCCCcc
Q psy1042 330 NLTILTEAHVTRIICDKTPNKHKKLVAKSVEFFY-KKKLRRARAKKEVISSAGAINS 385 (567)
Q Consensus 330 gv~I~~~t~V~~I~~d~~~~~~~~~rv~GV~~~~-~g~~~~v~A~k~VVLAAGa~~T 385 (567)
-++|.++++|++|+.+ ++ +|.||++.+ +|+...+.++ .||+|+|+|.-
T Consensus 159 ~~ki~~nskvv~il~n--~g-----kVsgVeymd~sgek~~~~~~-~VVlatGGf~y 207 (477)
T KOG2404|consen 159 LVKILLNSKVVDILRN--NG-----KVSGVEYMDASGEKSKIIGD-AVVLATGGFGY 207 (477)
T ss_pred HHhhhhcceeeeeecC--CC-----eEEEEEEEcCCCCccceecC-ceEEecCCcCc
Confidence 5789999999999954 45 899999986 4666677775 79999999986
No 105
>KOG2844|consensus
Probab=98.55 E-value=8.4e-07 Score=95.12 Aligned_cols=60 Identities=13% Similarity=0.159 Sum_probs=43.9
Q ss_pred hHHHHhcCCCeEEecceEEEEEEeCCCCCCCCccEEEEEEEEeCCEEEEEEcCcEEEEcCCCCccHHHHHhCCC
Q psy1042 321 IRPIRKKRKNLTILTEAHVTRIICDKTPNKHKKLVAKSVEFFYKKKLRRARAKKEVISSAGAINSPKILMLSGI 394 (567)
Q Consensus 321 L~~a~~~~~gv~I~~~t~V~~I~~d~~~~~~~~~rv~GV~~~~~g~~~~v~A~k~VVLAAGa~~Tp~LLl~SGI 394 (567)
|..+++ +.|+.|+.+|.|++|....+ +..||++..+ .|++. .||-|||-+. -.+-.++|+
T Consensus 193 la~~A~-~~GA~viE~cpV~~i~~~~~-------~~~gVeT~~G----~iet~-~~VNaaGvWA-r~Vg~m~gv 252 (856)
T KOG2844|consen 193 LARAAS-ALGALVIENCPVTGLHVETD-------KFGGVETPHG----SIETE-CVVNAAGVWA-REVGAMAGV 252 (856)
T ss_pred HHHHHH-hcCcEEEecCCcceEEeecC-------CccceeccCc----ceecc-eEEechhHHH-HHhhhhcCC
Confidence 334445 68999999999999998753 3459998776 68996 5999999554 444455553
No 106
>PRK07208 hypothetical protein; Provisional
Probab=98.53 E-value=3.4e-06 Score=92.13 Aligned_cols=39 Identities=33% Similarity=0.291 Sum_probs=35.4
Q ss_pred CcccEEEECCChhHHHHHHHHHhcCCCeEEEEecCCCCCC
Q psy1042 116 MTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIEEPF 155 (567)
Q Consensus 116 ~~yDvIVVGsG~aG~~aA~~Lae~~G~~VlVLE~G~~~~~ 155 (567)
...||||||||++|+++|++|+++ |++|+|||+.+..++
T Consensus 3 ~~~~vvIiGaGisGL~aA~~L~~~-g~~v~v~E~~~~~GG 41 (479)
T PRK07208 3 NKKSVVIIGAGPAGLTAAYELLKR-GYPVTVLEADPVVGG 41 (479)
T ss_pred CCCcEEEECcCHHHHHHHHHHHHC-CCcEEEEecCCCCCc
Confidence 457999999999999999999999 999999999877644
No 107
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=98.52 E-value=1.3e-06 Score=94.41 Aligned_cols=38 Identities=29% Similarity=0.352 Sum_probs=34.2
Q ss_pred CcccEEEECCChhHHHHHHHHHhcCCCeEEEEecCCCCC
Q psy1042 116 MTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIEEP 154 (567)
Q Consensus 116 ~~yDvIVVGsG~aG~~aA~~Lae~~G~~VlVLE~G~~~~ 154 (567)
...+|+|||||++|++||.+|.+. |.+|+|+|++...+
T Consensus 9 ~~~~VaIIGAG~aGL~aA~~l~~~-G~~v~vfE~~~~vG 46 (461)
T PLN02172 9 NSQHVAVIGAGAAGLVAARELRRE-GHTVVVFEREKQVG 46 (461)
T ss_pred CCCCEEEECCcHHHHHHHHHHHhc-CCeEEEEecCCCCc
Confidence 347899999999999999999999 99999999986643
No 108
>PLN02985 squalene monooxygenase
Probab=98.51 E-value=3.1e-06 Score=92.80 Aligned_cols=37 Identities=35% Similarity=0.513 Sum_probs=33.6
Q ss_pred CCCcccEEEECCChhHHHHHHHHHhcCCCeEEEEecCC
Q psy1042 114 DDMTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGI 151 (567)
Q Consensus 114 ~~~~yDvIVVGsG~aG~~aA~~Lae~~G~~VlVLE~G~ 151 (567)
.+..|||||||||++|+++|..|+++ |.+|+||||..
T Consensus 40 ~~~~~DViIVGAG~aGlalA~aLa~~-G~~V~vlEr~~ 76 (514)
T PLN02985 40 KDGATDVIIVGAGVGGSALAYALAKD-GRRVHVIERDL 76 (514)
T ss_pred cCCCceEEEECCCHHHHHHHHHHHHc-CCeEEEEECcC
Confidence 34678999999999999999999998 99999999853
No 109
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=98.51 E-value=5.2e-07 Score=86.39 Aligned_cols=63 Identities=22% Similarity=0.266 Sum_probs=38.2
Q ss_pred HHhhHHHHhcCCCeEEecceEEEEEEeCCCCCCCCccEEEEEEEEeCCEEEEEEcCcEEEEcCCCCccHHHHHhCC
Q psy1042 318 GAFIRPIRKKRKNLTILTEAHVTRIICDKTPNKHKKLVAKSVEFFYKKKLRRARAKKEVISSAGAINSPKILMLSG 393 (567)
Q Consensus 318 ~~~L~~a~~~~~gv~I~~~t~V~~I~~d~~~~~~~~~rv~GV~~~~~g~~~~v~A~k~VVLAAGa~~Tp~LLl~SG 393 (567)
..||...++ +.+++|.++++|++|..++ + + .-|.+.+ + .+++|+ .||||+|.+..|+++..-|
T Consensus 85 ~~yl~~~~~-~~~l~i~~~~~V~~v~~~~--~-----~-w~v~~~~-~--~~~~a~-~VVlAtG~~~~p~~p~~~g 147 (203)
T PF13738_consen 85 LDYLQEYAE-RFGLEIRFNTRVESVRRDG--D-----G-WTVTTRD-G--RTIRAD-RVVLATGHYSHPRIPDIPG 147 (203)
T ss_dssp HHHHHHHHH-HTTGGEETS--EEEEEEET--T-----T-EEEEETT-S---EEEEE-EEEE---SSCSB---S-TT
T ss_pred HHHHHHHHh-hcCcccccCCEEEEEEEec--c-----E-EEEEEEe-c--ceeeee-eEEEeeeccCCCCcccccc
Confidence 347777777 7889999999999999883 2 2 2244333 3 467895 7999999999999876444
No 110
>KOG1298|consensus
Probab=98.49 E-value=5.9e-07 Score=90.66 Aligned_cols=37 Identities=38% Similarity=0.516 Sum_probs=34.0
Q ss_pred CCCCcccEEEECCChhHHHHHHHHHhcCCCeEEEEecC
Q psy1042 113 DDDMTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAG 150 (567)
Q Consensus 113 ~~~~~yDvIVVGsG~aG~~aA~~Lae~~G~~VlVLE~G 150 (567)
..+..+||||||+|.+|+++|+.|+++ |.+|+||||.
T Consensus 41 ~~~~~~DvIIVGAGV~GsaLa~~L~kd-GRrVhVIERD 77 (509)
T KOG1298|consen 41 RNDGAADVIIVGAGVAGSALAYALAKD-GRRVHVIERD 77 (509)
T ss_pred ccCCcccEEEECCcchHHHHHHHHhhC-CcEEEEEecc
Confidence 345679999999999999999999999 9999999985
No 111
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=98.49 E-value=4.6e-07 Score=94.05 Aligned_cols=35 Identities=31% Similarity=0.471 Sum_probs=30.8
Q ss_pred cccEEEECCChhHHHHHHHHHhcCCCeEEEEecCCC
Q psy1042 117 TFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIE 152 (567)
Q Consensus 117 ~yDvIVVGsG~aG~~aA~~Lae~~G~~VlVLE~G~~ 152 (567)
+|||||||||++|+++|..|+++ |++|+||||.+.
T Consensus 1 ~~dV~IvGaG~aGl~~A~~L~~~-G~~v~i~E~~~~ 35 (356)
T PF01494_consen 1 EYDVAIVGAGPAGLAAALALARA-GIDVTIIERRPD 35 (356)
T ss_dssp EEEEEEE--SHHHHHHHHHHHHT-TCEEEEEESSSS
T ss_pred CceEEEECCCHHHHHHHHHHHhc-ccccccchhccc
Confidence 58999999999999999999999 999999998654
No 112
>PRK06126 hypothetical protein; Provisional
Probab=98.46 E-value=6e-06 Score=91.68 Aligned_cols=36 Identities=25% Similarity=0.307 Sum_probs=33.1
Q ss_pred CCcccEEEECCChhHHHHHHHHHhcCCCeEEEEecCC
Q psy1042 115 DMTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGI 151 (567)
Q Consensus 115 ~~~yDvIVVGsG~aG~~aA~~Lae~~G~~VlVLE~G~ 151 (567)
..++||+|||||++|+++|..|++. |++|+||||.+
T Consensus 5 ~~~~~VlIVGaGpaGL~~Al~La~~-G~~v~viEr~~ 40 (545)
T PRK06126 5 TSETPVLIVGGGPVGLALALDLGRR-GVDSILVERKD 40 (545)
T ss_pred CccCCEEEECCCHHHHHHHHHHHHC-CCcEEEEeCCC
Confidence 3568999999999999999999999 99999999864
No 113
>PRK08244 hypothetical protein; Provisional
Probab=98.46 E-value=4.3e-06 Score=91.62 Aligned_cols=35 Identities=34% Similarity=0.504 Sum_probs=32.5
Q ss_pred cccEEEECCChhHHHHHHHHHhcCCCeEEEEecCCC
Q psy1042 117 TFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIE 152 (567)
Q Consensus 117 ~yDvIVVGsG~aG~~aA~~Lae~~G~~VlVLE~G~~ 152 (567)
+|||||||||++|+++|..|++. |.+|+||||.+.
T Consensus 2 ~~dVlIVGaGpaGl~lA~~L~~~-G~~v~viEr~~~ 36 (493)
T PRK08244 2 KYEVIIIGGGPVGLMLASELALA-GVKTCVIERLKE 36 (493)
T ss_pred CCCEEEECCCHHHHHHHHHHHHC-CCcEEEEecCCC
Confidence 48999999999999999999998 999999998744
No 114
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=98.45 E-value=4e-06 Score=89.24 Aligned_cols=59 Identities=15% Similarity=0.067 Sum_probs=44.5
Q ss_pred hhHHHHhcCCCeEEecceEEEEEEeCCCCCCCCccEEEEEEEEeCCEEEEEEcCcEEEEcCCCCccHHH
Q psy1042 320 FIRPIRKKRKNLTILTEAHVTRIICDKTPNKHKKLVAKSVEFFYKKKLRRARAKKEVISSAGAINSPKI 388 (567)
Q Consensus 320 ~L~~a~~~~~gv~I~~~t~V~~I~~d~~~~~~~~~rv~GV~~~~~g~~~~v~A~k~VVLAAGa~~Tp~L 388 (567)
.|...++ +.|++|+++++|+++..+ ++ ++++|. ..+++...+.|+ .||||+|.+.+.-|
T Consensus 264 aL~~~l~-~~Gv~I~~g~~V~~v~~~--~~-----~V~~v~-~~~g~~~~i~AD-~VVLAtGrf~s~GL 322 (422)
T PRK05329 264 ALRRAFE-RLGGRIMPGDEVLGAEFE--GG-----RVTAVW-TRNHGDIPLRAR-HFVLATGSFFSGGL 322 (422)
T ss_pred HHHHHHH-hCCCEEEeCCEEEEEEEe--CC-----EEEEEE-eeCCceEEEECC-EEEEeCCCcccCce
Confidence 4555555 689999999999999876 34 677765 345556689996 79999999876655
No 115
>KOG2960|consensus
Probab=98.42 E-value=2e-07 Score=86.70 Aligned_cols=79 Identities=25% Similarity=0.310 Sum_probs=57.8
Q ss_pred cccccccCccccccccCCCCccCCCccCCCCCcccCCCCccccCCCCcccEEEECCChhHHHHHHHHHh-cCCCeEEEEe
Q psy1042 70 EDVSHILGDTFLKAYDNTGHKKRPEQSNEGYDKDHKNNNREEQDDDMTFDFIIIGAGSAGCVLANRLSE-IKKWKVLLLE 148 (567)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIVVGsG~aG~~aA~~Lae-~~G~~VlVLE 148 (567)
++++..+.+..+. .+.+.+++.| ++++..++.+.+.+....+.-.+-||||||+|.+|+++|+..++ +|.++|.+||
T Consensus 31 ~p~~~~l~~~~~s-~d~s~F~FaP-IrEStVSRaMTrRYf~DldkyAesDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE 108 (328)
T KOG2960|consen 31 TPVTHCLSDIVKS-EDWSDFKFAP-IRESTVSRAMTRRYFKDLDKYAESDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIE 108 (328)
T ss_pred Ccccccccccccc-cccccccccc-hhHHHHHHHHHHHHHHHHHhhhccceEEECCCccccceeeeeeccCCCceEEEEE
Confidence 3444455444443 4555677777 67777777777766555544456799999999999999999996 4899999999
Q ss_pred cC
Q psy1042 149 AG 150 (567)
Q Consensus 149 ~G 150 (567)
..
T Consensus 109 ~S 110 (328)
T KOG2960|consen 109 SS 110 (328)
T ss_pred ee
Confidence 64
No 116
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=98.42 E-value=2.2e-06 Score=93.96 Aligned_cols=33 Identities=42% Similarity=0.685 Sum_probs=31.2
Q ss_pred ccEEEECCChhHHHHHHHHHhcCCCeEEEEecCC
Q psy1042 118 FDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGI 151 (567)
Q Consensus 118 yDvIVVGsG~aG~~aA~~Lae~~G~~VlVLE~G~ 151 (567)
|||||||+|.+|+.+|..+|+. |.+|+|||++.
T Consensus 1 yDViVIGaG~AGl~aA~ala~~-G~~v~Lie~~~ 33 (617)
T TIGR00136 1 FDVIVIGGGHAGCEAALAAARM-GAKTLLLTLNL 33 (617)
T ss_pred CeEEEECccHHHHHHHHHHHHC-CCCEEEEeccc
Confidence 7999999999999999999998 99999999863
No 117
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=98.42 E-value=3.5e-06 Score=89.50 Aligned_cols=34 Identities=32% Similarity=0.381 Sum_probs=32.1
Q ss_pred cccEEEECCChhHHHHHHHHHhcCCCeEEEEecCC
Q psy1042 117 TFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGI 151 (567)
Q Consensus 117 ~yDvIVVGsG~aG~~aA~~Lae~~G~~VlVLE~G~ 151 (567)
.+||||||+|++|+++|..|++. |++|+|||+.+
T Consensus 2 ~~dV~IvGaGpaGl~~A~~L~~~-G~~v~v~E~~~ 35 (392)
T PRK08243 2 RTQVAIIGAGPAGLLLGQLLHLA-GIDSVVLERRS 35 (392)
T ss_pred cceEEEECCCHHHHHHHHHHHhc-CCCEEEEEcCC
Confidence 47999999999999999999998 99999999875
No 118
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=98.42 E-value=3.4e-06 Score=89.84 Aligned_cols=32 Identities=28% Similarity=0.487 Sum_probs=30.7
Q ss_pred ccEEEECCChhHHHHHHHHHhcCCCeEEEEecC
Q psy1042 118 FDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAG 150 (567)
Q Consensus 118 yDvIVVGsG~aG~~aA~~Lae~~G~~VlVLE~G 150 (567)
+||||||||++|+++|+.||++ |++|+|||+.
T Consensus 1 ~~VvIVGaGPAG~~aA~~la~~-G~~V~llE~~ 32 (398)
T TIGR02028 1 LRVAVVGGGPAGASAAETLASA-GIQTFLLERK 32 (398)
T ss_pred CeEEEECCcHHHHHHHHHHHhC-CCcEEEEecC
Confidence 6999999999999999999999 9999999985
No 119
>PRK07045 putative monooxygenase; Reviewed
Probab=98.41 E-value=2.2e-06 Score=90.88 Aligned_cols=36 Identities=31% Similarity=0.398 Sum_probs=33.5
Q ss_pred CcccEEEECCChhHHHHHHHHHhcCCCeEEEEecCCC
Q psy1042 116 MTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIE 152 (567)
Q Consensus 116 ~~yDvIVVGsG~aG~~aA~~Lae~~G~~VlVLE~G~~ 152 (567)
..+||+|||||++|+++|..|+++ |++|+|+||.+.
T Consensus 4 ~~~~V~IiGgGpaGl~~A~~L~~~-G~~v~v~E~~~~ 39 (388)
T PRK07045 4 NPVDVLINGSGIAGVALAHLLGAR-GHSVTVVERAAR 39 (388)
T ss_pred ceeEEEEECCcHHHHHHHHHHHhc-CCcEEEEeCCCc
Confidence 568999999999999999999998 999999998754
No 120
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=98.39 E-value=4.5e-06 Score=88.55 Aligned_cols=33 Identities=42% Similarity=0.565 Sum_probs=31.5
Q ss_pred cccEEEECCChhHHHHHHHHHhcCCCeEEEEecC
Q psy1042 117 TFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAG 150 (567)
Q Consensus 117 ~yDvIVVGsG~aG~~aA~~Lae~~G~~VlVLE~G 150 (567)
.+||||||||++|+++|..|+++ |++|+|||+.
T Consensus 2 ~~dV~IvGaG~aGl~lA~~L~~~-G~~V~l~E~~ 34 (387)
T COG0654 2 MLDVAIVGAGPAGLALALALARA-GLDVTLLERA 34 (387)
T ss_pred CCCEEEECCCHHHHHHHHHHHhC-CCcEEEEccC
Confidence 47999999999999999999999 9999999986
No 121
>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.38 E-value=2.1e-06 Score=95.38 Aligned_cols=58 Identities=10% Similarity=0.090 Sum_probs=46.6
Q ss_pred hhHHHHhcCCCeEEecceEEEEEEeCCCCCCCCccEEEEEEEEe--CCEEEEEEcCcEEEEcCCCCcc
Q psy1042 320 FIRPIRKKRKNLTILTEAHVTRIICDKTPNKHKKLVAKSVEFFY--KKKLRRARAKKEVISSAGAINS 385 (567)
Q Consensus 320 ~L~~a~~~~~gv~I~~~t~V~~I~~d~~~~~~~~~rv~GV~~~~--~g~~~~v~A~k~VVLAAGa~~T 385 (567)
.|...+. +.|++|+.++.|++|+.++ ++ +|+||.+.+ +|+.+.|.| |.||||||++..
T Consensus 131 ~L~~~~~-~~gi~i~~~~~~~~Li~~~-~g-----~v~Gv~~~~~~~g~~~~i~A-kaVVLATGG~~~ 190 (570)
T PRK05675 131 TLYQGNL-KNGTTFLNEWYAVDLVKNQ-DG-----AVVGVIAICIETGETVYIKS-KATVLATGGAGR 190 (570)
T ss_pred HHHHHHh-ccCCEEEECcEEEEEEEcC-CC-----eEEEEEEEEcCCCcEEEEec-CeEEECCCCccc
Confidence 3444444 5799999999999999864 35 899999853 677888999 589999999985
No 122
>PRK06184 hypothetical protein; Provisional
Probab=98.37 E-value=8.6e-06 Score=89.48 Aligned_cols=35 Identities=37% Similarity=0.473 Sum_probs=32.6
Q ss_pred cccEEEECCChhHHHHHHHHHhcCCCeEEEEecCCC
Q psy1042 117 TFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIE 152 (567)
Q Consensus 117 ~yDvIVVGsG~aG~~aA~~Lae~~G~~VlVLE~G~~ 152 (567)
++||||||||++|+++|..|++. |.+|+||||.+.
T Consensus 3 ~~dVlIVGaGpaGl~~A~~La~~-Gi~v~viE~~~~ 37 (502)
T PRK06184 3 TTDVLIVGAGPTGLTLAIELARR-GVSFRLIEKAPE 37 (502)
T ss_pred CCcEEEECCCHHHHHHHHHHHHC-CCcEEEEeCCCC
Confidence 58999999999999999999999 999999998643
No 123
>PRK11445 putative oxidoreductase; Provisional
Probab=98.36 E-value=1.1e-05 Score=84.53 Aligned_cols=33 Identities=36% Similarity=0.567 Sum_probs=30.2
Q ss_pred ccEEEECCChhHHHHHHHHHhcCCCeEEEEecCCC
Q psy1042 118 FDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIE 152 (567)
Q Consensus 118 yDvIVVGsG~aG~~aA~~Lae~~G~~VlVLE~G~~ 152 (567)
|||+|||+|++|+++|..|++. .+|+|||+.+.
T Consensus 2 ~dV~IvGaGpaGl~~A~~La~~--~~V~liE~~~~ 34 (351)
T PRK11445 2 YDVAIIGLGPAGSALARLLAGK--MKVIAIDKKHQ 34 (351)
T ss_pred ceEEEECCCHHHHHHHHHHhcc--CCEEEEECCCc
Confidence 8999999999999999999985 89999998753
No 124
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=98.36 E-value=6.4e-06 Score=86.82 Aligned_cols=62 Identities=13% Similarity=0.076 Sum_probs=47.2
Q ss_pred hHHHHhcCCCeEEecceEEEEEEeCCCCCCCCccEEEEEEEEeCCEEEEEEcCcEEEEcCCCCccHHHHHhC
Q psy1042 321 IRPIRKKRKNLTILTEAHVTRIICDKTPNKHKKLVAKSVEFFYKKKLRRARAKKEVISSAGAINSPKILMLS 392 (567)
Q Consensus 321 L~~a~~~~~gv~I~~~t~V~~I~~d~~~~~~~~~rv~GV~~~~~g~~~~v~A~k~VVLAAGa~~Tp~LLl~S 392 (567)
|..+.+ +.|++++.+++|+++..+ ++ ++++|.+..++ ...++|+ .||||+|+|-|..|+...
T Consensus 269 L~~~~~-~~Gg~il~g~~V~~i~~~--~~-----~v~~V~t~~g~-~~~l~AD-~vVLAaGaw~S~gL~a~l 330 (419)
T TIGR03378 269 LKHRFE-QLGGVMLPGDRVLRAEFE--GN-----RVTRIHTRNHR-DIPLRAD-HFVLASGSFFSNGLVAEF 330 (419)
T ss_pred HHHHHH-HCCCEEEECcEEEEEEee--CC-----eEEEEEecCCc-cceEECC-EEEEccCCCcCHHHHhhc
Confidence 444444 579999999999999887 45 78887764432 3478997 699999999888887654
No 125
>PRK06847 hypothetical protein; Provisional
Probab=98.34 E-value=3.8e-06 Score=88.51 Aligned_cols=35 Identities=26% Similarity=0.253 Sum_probs=32.4
Q ss_pred CcccEEEECCChhHHHHHHHHHhcCCCeEEEEecCC
Q psy1042 116 MTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGI 151 (567)
Q Consensus 116 ~~yDvIVVGsG~aG~~aA~~Lae~~G~~VlVLE~G~ 151 (567)
+..||||||||++|+++|..|++. |.+|+|+|+..
T Consensus 3 ~~~~V~IVGaG~aGl~~A~~L~~~-g~~v~v~E~~~ 37 (375)
T PRK06847 3 AVKKVLIVGGGIGGLSAAIALRRA-GIAVDLVEIDP 37 (375)
T ss_pred CcceEEEECCCHHHHHHHHHHHhC-CCCEEEEecCC
Confidence 457999999999999999999998 99999999864
No 126
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=98.34 E-value=1.1e-05 Score=89.56 Aligned_cols=36 Identities=39% Similarity=0.506 Sum_probs=33.3
Q ss_pred CcccEEEECCChhHHHHHHHHHhcCCCeEEEEecCCC
Q psy1042 116 MTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIE 152 (567)
Q Consensus 116 ~~yDvIVVGsG~aG~~aA~~Lae~~G~~VlVLE~G~~ 152 (567)
..+||||||+|++|+++|..|++. |++|+||||...
T Consensus 9 ~~~dV~IVGaGp~Gl~lA~~L~~~-G~~v~v~Er~~~ 44 (538)
T PRK06183 9 HDTDVVIVGAGPVGLTLANLLGQY-GVRVLVLERWPT 44 (538)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHC-CCcEEEEecCCC
Confidence 568999999999999999999998 999999998753
No 127
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=98.33 E-value=1.4e-05 Score=85.10 Aligned_cols=36 Identities=28% Similarity=0.403 Sum_probs=32.0
Q ss_pred cccEEEECCChhHHHHHHHHHhc-CCCeEEEEecCCC
Q psy1042 117 TFDFIIIGAGSAGCVLANRLSEI-KKWKVLLLEAGIE 152 (567)
Q Consensus 117 ~yDvIVVGsG~aG~~aA~~Lae~-~G~~VlVLE~G~~ 152 (567)
.|||||||||++|+++|..|++. +|++|+|||+.+.
T Consensus 1 ~~dv~IvGaG~aGl~~A~~L~~~g~g~~v~liE~~~~ 37 (403)
T PRK07333 1 QCDVVIAGGGYVGLALAVALKQAAPHLPVTVVDAAPA 37 (403)
T ss_pred CCCEEEECccHHHHHHHHHHhcCCCCCEEEEEeCCCc
Confidence 38999999999999999999998 2499999998753
No 128
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=98.28 E-value=1.1e-05 Score=85.65 Aligned_cols=34 Identities=29% Similarity=0.408 Sum_probs=32.0
Q ss_pred cccEEEECCChhHHHHHHHHHhcCCCeEEEEecCC
Q psy1042 117 TFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGI 151 (567)
Q Consensus 117 ~yDvIVVGsG~aG~~aA~~Lae~~G~~VlVLE~G~ 151 (567)
.+||||||||++|+++|..|++. |++|+|||+.+
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~-G~~v~viE~~~ 35 (390)
T TIGR02360 2 KTQVAIIGAGPSGLLLGQLLHKA-GIDNVILERQS 35 (390)
T ss_pred CceEEEECccHHHHHHHHHHHHC-CCCEEEEECCC
Confidence 47999999999999999999998 99999999864
No 129
>KOG2853|consensus
Probab=98.26 E-value=5.6e-05 Score=75.48 Aligned_cols=41 Identities=27% Similarity=0.307 Sum_probs=34.3
Q ss_pred cCCCCcccEEEECCChhHHHHHHHHHh---cCCCeEEEEecCCC
Q psy1042 112 QDDDMTFDFIIIGAGSAGCVLANRLSE---IKKWKVLLLEAGIE 152 (567)
Q Consensus 112 ~~~~~~yDvIVVGsG~aG~~aA~~Lae---~~G~~VlVLE~G~~ 152 (567)
+.....+||||||||..|+++|+.|-+ +.|++|+|+|+..-
T Consensus 81 ~~f~~~~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErddt 124 (509)
T KOG2853|consen 81 EVFPYHCDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERDDT 124 (509)
T ss_pred cccccccCEEEECCCccchhhHHHHHHHhhcCCceEEEEeccCc
Confidence 345567899999999999999999976 34799999998654
No 130
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.25 E-value=2.4e-05 Score=82.54 Aligned_cols=33 Identities=21% Similarity=0.340 Sum_probs=31.4
Q ss_pred ccEEEECCChhHHHHHHHHHhcCCCeEEEEecCC
Q psy1042 118 FDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGI 151 (567)
Q Consensus 118 yDvIVVGsG~aG~~aA~~Lae~~G~~VlVLE~G~ 151 (567)
+||||||||++|+++|..|++. |++|+|+|+.+
T Consensus 2 ~dV~IvGgG~~Gl~~A~~L~~~-G~~v~l~E~~~ 34 (374)
T PRK06617 2 SNTVILGCGLSGMLTALSFAQK-GIKTTIFESKS 34 (374)
T ss_pred ccEEEECCCHHHHHHHHHHHcC-CCeEEEecCCC
Confidence 7999999999999999999998 99999999864
No 131
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=98.24 E-value=3.3e-05 Score=80.32 Aligned_cols=80 Identities=20% Similarity=0.158 Sum_probs=52.0
Q ss_pred hHHHHhcCCCeEEecceEEEEEEeCCCCCCCCccEEEEEEEEeCCEEEEEEcCcEEEEcCCCCccHHHHHhC-CCCCcch
Q psy1042 321 IRPIRKKRKNLTILTEAHVTRIICDKTPNKHKKLVAKSVEFFYKKKLRRARAKKEVISSAGAINSPKILMLS-GIGPKDH 399 (567)
Q Consensus 321 L~~a~~~~~gv~I~~~t~V~~I~~d~~~~~~~~~rv~GV~~~~~g~~~~v~A~k~VVLAAGa~~Tp~LLl~S-GIG~~~~ 399 (567)
+...++ ..|++|+.+|+|+.|++++ + .+.+|...++ .++.++ .||||-|--+.-.+-++. .+|-.-.
T Consensus 179 i~~~l~-~~G~ei~f~t~VeDi~~~~--~-----~~~~v~~~~g---~~i~~~-~vvlA~Grsg~dw~~~l~~K~Gv~~~ 246 (486)
T COG2509 179 IREYLE-SLGGEIRFNTEVEDIEIED--N-----EVLGVKLTKG---EEIEAD-YVVLAPGRSGRDWFEMLHKKLGVKMR 246 (486)
T ss_pred HHHHHH-hcCcEEEeeeEEEEEEecC--C-----ceEEEEccCC---cEEecC-EEEEccCcchHHHHHHHHHhcCcccc
Confidence 334444 5889999999999999984 3 5778887765 378996 799999965555443222 2222222
Q ss_pred hhhcCCcccccCC
Q psy1042 400 LTSLNIKTLVDLK 412 (567)
Q Consensus 400 L~~~gI~v~~~lp 412 (567)
-...-|.|.++.|
T Consensus 247 ~~p~dIGVRvE~p 259 (486)
T COG2509 247 AKPFDIGVRVEHP 259 (486)
T ss_pred cCCeeEEEEEecc
Confidence 2345555666643
No 132
>KOG2665|consensus
Probab=98.23 E-value=1.4e-05 Score=79.02 Aligned_cols=214 Identities=20% Similarity=0.177 Sum_probs=112.6
Q ss_pred CCCcccEEEECCChhHHHHHHHHHhc-CCCeEEEEecCCCCCCccccCCccccccCCCCcCCcccCCCcccccCCCCCce
Q psy1042 114 DDMTFDFIIIGAGSAGCVLANRLSEI-KKWKVLLLEAGIEEPFFADVPGLAPLISRSNIDWNYMTMPEPHACKARPNGRC 192 (567)
Q Consensus 114 ~~~~yDvIVVGsG~aG~~aA~~Lae~-~G~~VlVLE~G~~~~~~~~~p~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 192 (567)
....||.||||+|+.|++.|.+|.-. |+.+|+|||+.......++ ++
T Consensus 45 s~~~~D~VvvGgGiVGlAsARel~lrhp~l~V~vleke~~la~hqS------------------------------gh-- 92 (453)
T KOG2665|consen 45 SKERYDLVVVGGGIVGLASARELSLRHPSLKVAVLEKEKSLAVHQS------------------------------GH-- 92 (453)
T ss_pred ccccccEEEECCceeehhhhHHHhhcCCCceEEeeehhhhhceeec------------------------------cc--
Confidence 34679999999999999999999864 8999999999765421100 00
Q ss_pred eeeceeEeccccccceeEEecCChhhHHHHHHcCCCCCChhhHHHHHHhhccCCCCcccCCCCCCCCCCCceeeecCCCC
Q psy1042 193 YWARGKVMGGSSTINYMIYARGNAEDYDEWEAMGNEGWGYDEVLEYFKKSEDNEDKEIYHKNPEYHGKGGYQTVEWLPYA 272 (567)
Q Consensus 193 ~~~~g~~lGGsS~~n~~~~~r~~~~d~~~w~~~g~~~w~~~~l~~y~~~~e~~~~~~~~~~~~~~~g~~G~l~~~~~~~~ 272 (567)
-+..+.+++|..+..- + +.+.-. ..+-+..|+++-+- -+...|.+-+...+..
T Consensus 93 ---------NSgViHaGIYY~P~SL--K--AklCV~--G~~LlY~yc~e~~I------------pyKk~GKLIVAt~~~E 145 (453)
T KOG2665|consen 93 ---------NSGVIHAGIYYKPGSL--K--AKLCVE--GRELLYEYCDEKKI------------PYKKTGKLIVATESEE 145 (453)
T ss_pred ---------ccceeeeeeeeCCccc--c--hhhhhc--cHHHHHHHhhhcCC------------ChhhcceEEEEeChhh
Confidence 0122334444333211 0 000000 11122334433221 2334566766665555
Q ss_pred CchHHHHHHHHHhcCCCCC-CCCCCC---ceeeeee--ccccC-CCcc-c-chhHHhhHHHHhcCCCeEEecceEEEEEE
Q psy1042 273 DKNLPVLIKAWKEKGYPER-DLNAEN---QIGVMHL--QTTTR-HGER-L-STNGAFIRPIRKKRKNLTILTEAHVTRII 343 (567)
Q Consensus 273 ~~~~~~~~~~~~~~G~~~~-~~~~~~---~~g~~~~--~~~~~-~g~r-~-s~~~~~L~~a~~~~~gv~I~~~t~V~~I~ 343 (567)
-+..+.+++.....|++-. -..+.+ ..-+|.+ ...++ .|.- + +....|-.+ .+ ..+.+|.+|-+|.++.
T Consensus 146 iprLd~L~~~g~qN~v~glrmieg~ei~~~EP~crgvkAl~sPhtGIvD~~~v~ls~~ed-F~-~~gg~i~~n~~l~g~~ 223 (453)
T KOG2665|consen 146 IPRLDALMHRGTQNGVPGLRMIEGSEIMEMEPYCRGVKALLSPHTGIVDWGSVTLSFGED-FD-FMGGRIYTNFRLQGIA 223 (453)
T ss_pred cchHHHHHHhhhhcCCCCeeeeccchhhhcChhhhhhhhhcCCCcceeehHHHHHHHHHH-HH-Hhcccccccceeccch
Confidence 6667777777777777642 112211 1111111 01111 1211 1 111223333 33 4688999999999997
Q ss_pred eCCCCCCCCccEEEEEEEEeCCEEEEEEcCcEEEEcCCCCccHHHHHhCCCCC
Q psy1042 344 CDKTPNKHKKLVAKSVEFFYKKKLRRARAKKEVISSAGAINSPKILMLSGIGP 396 (567)
Q Consensus 344 ~d~~~~~~~~~rv~GV~~~~~g~~~~v~A~k~VVLAAGa~~Tp~LLl~SGIG~ 396 (567)
.+++...+ .-+.+ .+++..+++. |.||-||| +.+.++-..||.-.
T Consensus 224 ~n~~~~~~-----Ypivv-~ngk~ee~r~-~~~vtc~g-l~sdr~aa~sgc~~ 268 (453)
T KOG2665|consen 224 QNKEATFS-----YPIVV-LNGKGEEKRT-KNVVTCAG-LQSDRCAALSGCEL 268 (453)
T ss_pred hccCCCCC-----CceEE-ecCccceeEE-eEEEEecc-ccHhHHHHHhCCCC
Confidence 65432111 11222 2334456777 44555555 99999999998643
No 133
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=98.23 E-value=3.1e-06 Score=89.59 Aligned_cols=34 Identities=35% Similarity=0.492 Sum_probs=31.0
Q ss_pred CcccEEEECCChhHHHHHHHHHhcCCCeEEEEecC
Q psy1042 116 MTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAG 150 (567)
Q Consensus 116 ~~yDvIVVGsG~aG~~aA~~Lae~~G~~VlVLE~G 150 (567)
..|||||||||-||+-||...|+- |.+++||--.
T Consensus 3 ~~~DVIVIGgGHAG~EAA~AaARm-G~ktlLlT~~ 36 (621)
T COG0445 3 KEYDVIVIGGGHAGVEAALAAARM-GAKTLLLTLN 36 (621)
T ss_pred CCCceEEECCCccchHHHHhhhcc-CCeEEEEEcC
Confidence 459999999999999999999998 9999999743
No 134
>PRK06834 hypothetical protein; Provisional
Probab=98.22 E-value=2.2e-05 Score=85.74 Aligned_cols=34 Identities=26% Similarity=0.384 Sum_probs=32.1
Q ss_pred cccEEEECCChhHHHHHHHHHhcCCCeEEEEecCC
Q psy1042 117 TFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGI 151 (567)
Q Consensus 117 ~yDvIVVGsG~aG~~aA~~Lae~~G~~VlVLE~G~ 151 (567)
++||||||+|++|+++|..|++. |.+|+|||+.+
T Consensus 3 ~~dVlIVGaGp~Gl~lA~~La~~-G~~v~vlEr~~ 36 (488)
T PRK06834 3 EHAVVIAGGGPTGLMLAGELALA-GVDVAIVERRP 36 (488)
T ss_pred cceEEEECCCHHHHHHHHHHHHC-CCcEEEEecCC
Confidence 48999999999999999999999 99999999864
No 135
>PRK07588 hypothetical protein; Provisional
Probab=98.22 E-value=2.6e-05 Score=82.81 Aligned_cols=32 Identities=34% Similarity=0.340 Sum_probs=30.5
Q ss_pred cEEEECCChhHHHHHHHHHhcCCCeEEEEecCC
Q psy1042 119 DFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGI 151 (567)
Q Consensus 119 DvIVVGsG~aG~~aA~~Lae~~G~~VlVLE~G~ 151 (567)
||||||||++|+++|..|++. |++|+|+|+.+
T Consensus 2 ~V~IVGgG~aGl~~A~~L~~~-G~~v~v~E~~~ 33 (391)
T PRK07588 2 KVAISGAGIAGPTLAYWLRRY-GHEPTLIERAP 33 (391)
T ss_pred eEEEECccHHHHHHHHHHHHC-CCceEEEeCCC
Confidence 799999999999999999998 99999999874
No 136
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=98.20 E-value=4.1e-05 Score=85.07 Aligned_cols=36 Identities=28% Similarity=0.410 Sum_probs=33.3
Q ss_pred CCcccEEEECCChhHHHHHHHHHhcCCCeEEEEecCC
Q psy1042 115 DMTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGI 151 (567)
Q Consensus 115 ~~~yDvIVVGsG~aG~~aA~~Lae~~G~~VlVLE~G~ 151 (567)
+.++||+|||+|++|+++|..|++. |.+|+||||.+
T Consensus 21 ~~~~dVlIVGaGpaGl~lA~~L~~~-G~~v~viE~~~ 56 (547)
T PRK08132 21 PARHPVVVVGAGPVGLALAIDLAQQ-GVPVVLLDDDD 56 (547)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHhC-CCcEEEEeCCC
Confidence 3568999999999999999999998 99999999864
No 137
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=98.19 E-value=2.1e-06 Score=67.05 Aligned_cols=32 Identities=31% Similarity=0.407 Sum_probs=28.9
Q ss_pred EECCChhHHHHHHHHHhcCCCeEEEEecCCCCC
Q psy1042 122 IIGAGSAGCVLANRLSEIKKWKVLLLEAGIEEP 154 (567)
Q Consensus 122 VVGsG~aG~~aA~~Lae~~G~~VlVLE~G~~~~ 154 (567)
|||||++|+++|++|+++ |++|+|+|+.+...
T Consensus 1 IiGaG~sGl~aA~~L~~~-g~~v~v~E~~~~~G 32 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKA-GYRVTVFEKNDRLG 32 (68)
T ss_dssp EES-SHHHHHHHHHHHHT-TSEEEEEESSSSSS
T ss_pred CEeeCHHHHHHHHHHHHC-CCcEEEEecCcccC
Confidence 899999999999999999 99999999987754
No 138
>PRK07538 hypothetical protein; Provisional
Probab=98.18 E-value=2.4e-05 Score=83.79 Aligned_cols=32 Identities=31% Similarity=0.434 Sum_probs=30.5
Q ss_pred cEEEECCChhHHHHHHHHHhcCCCeEEEEecCC
Q psy1042 119 DFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGI 151 (567)
Q Consensus 119 DvIVVGsG~aG~~aA~~Lae~~G~~VlVLE~G~ 151 (567)
||||||||++|+++|..|+++ |++|+|+|+.+
T Consensus 2 dV~IVGaG~aGl~~A~~L~~~-G~~v~v~E~~~ 33 (413)
T PRK07538 2 KVLIAGGGIGGLTLALTLHQR-GIEVVVFEAAP 33 (413)
T ss_pred eEEEECCCHHHHHHHHHHHhC-CCcEEEEEcCC
Confidence 899999999999999999998 99999999864
No 139
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=98.16 E-value=8.1e-06 Score=89.60 Aligned_cols=36 Identities=28% Similarity=0.266 Sum_probs=29.7
Q ss_pred cEEEECCChhHHHHHHHHHhcCCCeEEEEecCCCCCC
Q psy1042 119 DFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIEEPF 155 (567)
Q Consensus 119 DvIVVGsG~aG~~aA~~Lae~~G~~VlVLE~G~~~~~ 155 (567)
.|+|||||++|+++|..|.+. |+.|+++||.+..++
T Consensus 3 rVaVIGaG~sGL~a~k~l~e~-g~~~~~fE~~~~iGG 38 (531)
T PF00743_consen 3 RVAVIGAGPSGLAAAKNLLEE-GLEVTCFEKSDDIGG 38 (531)
T ss_dssp EEEEE--SHHHHHHHHHHHHT-T-EEEEEESSSSSSG
T ss_pred EEEEECccHHHHHHHHHHHHC-CCCCeEEecCCCCCc
Confidence 489999999999999999999 999999999876543
No 140
>KOG4254|consensus
Probab=98.16 E-value=7.2e-06 Score=84.63 Aligned_cols=59 Identities=29% Similarity=0.275 Sum_probs=47.9
Q ss_pred hhHHHHhcCCCeEEecceEEEEEEeCCCCCCCCccEEEEEEEEeCCEEEEEEcCcEEEEcCCCCccHHHHH
Q psy1042 320 FIRPIRKKRKNLTILTEAHVTRIICDKTPNKHKKLVAKSVEFFYKKKLRRARAKKEVISSAGAINSPKILM 390 (567)
Q Consensus 320 ~L~~a~~~~~gv~I~~~t~V~~I~~d~~~~~~~~~rv~GV~~~~~g~~~~v~A~k~VVLAAGa~~Tp~LLl 390 (567)
.+.+.++ +.|..|++++.|.+|+.|+ + +|+||.+.++ +++++ |.||-.|+-+.|=.-|+
T Consensus 269 aia~~~~-~~GaeI~tka~Vq~Illd~--g-----ka~GV~L~dG---~ev~s-k~VvSNAt~~~Tf~kLl 327 (561)
T KOG4254|consen 269 AIAEGAK-RAGAEIFTKATVQSILLDS--G-----KAVGVRLADG---TEVRS-KIVVSNATPWDTFEKLL 327 (561)
T ss_pred HHHHHHH-hccceeeehhhhhheeccC--C-----eEEEEEecCC---cEEEe-eeeecCCchHHHHHHhC
Confidence 4555666 7999999999999999994 5 8999999887 36778 68999999888874444
No 141
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=98.15 E-value=3.1e-05 Score=83.38 Aligned_cols=38 Identities=26% Similarity=0.322 Sum_probs=34.3
Q ss_pred CCcccEEEECCChhHHHHHHHHHhcCCCe-EEEEecCCCC
Q psy1042 115 DMTFDFIIIGAGSAGCVLANRLSEIKKWK-VLLLEAGIEE 153 (567)
Q Consensus 115 ~~~yDvIVVGsG~aG~~aA~~Lae~~G~~-VlVLE~G~~~ 153 (567)
...+||+|||||.+|+++|++|.+. |.. ++||||....
T Consensus 6 ~~~~~v~IIGaG~sGlaaa~~L~~~-g~~~~~i~Ek~~~~ 44 (443)
T COG2072 6 ATHTDVAIIGAGQSGLAAAYALKQA-GVPDFVIFEKRDDV 44 (443)
T ss_pred CCcccEEEECCCHHHHHHHHHHHHc-CCCcEEEEEccCCc
Confidence 4568999999999999999999999 888 9999998654
No 142
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=98.09 E-value=5e-06 Score=89.74 Aligned_cols=35 Identities=26% Similarity=0.410 Sum_probs=32.7
Q ss_pred CCcccEEEECCChhHHHHHHHHHhcCCCeEEEEecC
Q psy1042 115 DMTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAG 150 (567)
Q Consensus 115 ~~~yDvIVVGsG~aG~~aA~~Lae~~G~~VlVLE~G 150 (567)
...|||||||||++|+++|..||++ |++|+|||+.
T Consensus 37 ~~~~DViIVGaGPAG~~aA~~LA~~-G~~VlllEr~ 71 (450)
T PLN00093 37 GRKLRVAVIGGGPAGACAAETLAKG-GIETFLIERK 71 (450)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHhC-CCcEEEEecC
Confidence 3569999999999999999999999 9999999985
No 143
>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit. Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=98.07 E-value=6.6e-05 Score=82.78 Aligned_cols=58 Identities=24% Similarity=0.267 Sum_probs=47.5
Q ss_pred CCCeEEecceEEEEEEeCCCCCCCCccEEEEEEEEe--CCEEEEEEcCcEEEEcCCCCccHHHHHhCCC
Q psy1042 328 RKNLTILTEAHVTRIICDKTPNKHKKLVAKSVEFFY--KKKLRRARAKKEVISSAGAINSPKILMLSGI 394 (567)
Q Consensus 328 ~~gv~I~~~t~V~~I~~d~~~~~~~~~rv~GV~~~~--~g~~~~v~A~k~VVLAAGa~~Tp~LLl~SGI 394 (567)
+.|++|+++++|++|..+ ++ +++||++.+ +|+..+|+|+ .||+|||+ ++..|+...|+
T Consensus 140 ~~Ga~i~~~t~V~~i~~~--~~-----~v~gv~v~~~~~g~~~~i~a~-~VVnAaG~-wa~~l~~~~g~ 199 (516)
T TIGR03377 140 EHGARIFTYTKVTGLIRE--GG-----RVTGVKVEDHKTGEEERIEAQ-VVINAAGI-WAGRIAEYAGL 199 (516)
T ss_pred HcCCEEEcCcEEEEEEEE--CC-----EEEEEEEEEcCCCcEEEEEcC-EEEECCCc-chHHHHHhcCC
Confidence 489999999999999876 45 789999864 4656689995 79999996 57888877776
No 144
>TIGR01816 sdhA_forward succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup. Succinate dehydrogenase and fumarate reductase are homologous enzymes reversible in principle but favored under different circumstances. This model represents a narrowly defined clade of the succinate dehydrogenase flavoprotein subunit as found in mitochondria, in Rickettsia, in E. coli and other Proteobacteria, and in a few other lineages. However, this model excludes all known fumarate reductases. It also excludes putative succinate dehydrogenases that appear to diverged before the split between E. coli succinate dehydrogenase and fumarate reductase.
Probab=98.06 E-value=5.3e-05 Score=84.29 Aligned_cols=58 Identities=14% Similarity=0.248 Sum_probs=46.8
Q ss_pred HhhHHHHhcCCCeEEecceEEEEEEeCCCCCCCCccEEEEEEEEe--CCEEEEEEcCcEEEEcCCCCcc
Q psy1042 319 AFIRPIRKKRKNLTILTEAHVTRIICDKTPNKHKKLVAKSVEFFY--KKKLRRARAKKEVISSAGAINS 385 (567)
Q Consensus 319 ~~L~~a~~~~~gv~I~~~t~V~~I~~d~~~~~~~~~rv~GV~~~~--~g~~~~v~A~k~VVLAAGa~~T 385 (567)
..|...+. +.|++|++++.|++|+.+ ++ +|+||.+.+ +|+...|.| |.||||||++..
T Consensus 123 ~~L~~~~~-~~gi~i~~~~~~~~Li~~--~g-----~v~Ga~~~~~~~g~~~~i~A-kaVILATGG~~~ 182 (565)
T TIGR01816 123 HTLYQQNL-KADTSFFNEYFALDLLME--DG-----ECRGVIAYCLETGEIHRFRA-KAVVLATGGYGR 182 (565)
T ss_pred HHHHHHHH-hCCCEEEeccEEEEEEee--CC-----EEEEEEEEEcCCCcEEEEEe-CeEEECCCCccc
Confidence 34444444 589999999999999986 45 899998853 677788999 589999999975
No 145
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=98.04 E-value=0.00011 Score=86.92 Aligned_cols=62 Identities=15% Similarity=0.055 Sum_probs=48.0
Q ss_pred HHhcCCCeEEecceEEEEEEeCCCCCCCCccEEEEEEEEe-CCEEEEEEcCcEEEEcCCCCccHHHHHhCCCC
Q psy1042 324 IRKKRKNLTILTEAHVTRIICDKTPNKHKKLVAKSVEFFY-KKKLRRARAKKEVISSAGAINSPKILMLSGIG 395 (567)
Q Consensus 324 a~~~~~gv~I~~~t~V~~I~~d~~~~~~~~~rv~GV~~~~-~g~~~~v~A~k~VVLAAGa~~Tp~LLl~SGIG 395 (567)
.++ +.|++|++++.|++|.-+ + ++.+|++.. ++...++.++ .|+++.|-.....|+...|..
T Consensus 360 ~L~-~~GV~i~~~~~v~~i~g~---~-----~v~~V~l~~~~g~~~~i~~D-~V~va~G~~Pnt~L~~~lg~~ 422 (985)
T TIGR01372 360 EAR-ELGIEVLTGHVVAATEGG---K-----RVSGVAVARNGGAGQRLEAD-ALAVSGGWTPVVHLFSQRGGK 422 (985)
T ss_pred HHH-HcCCEEEcCCeEEEEecC---C-----cEEEEEEEecCCceEEEECC-EEEEcCCcCchhHHHHhcCCC
Confidence 344 589999999999999643 3 678888774 3445679997 799999988888888877643
No 146
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=98.03 E-value=4.2e-06 Score=88.81 Aligned_cols=32 Identities=31% Similarity=0.602 Sum_probs=31.0
Q ss_pred ccEEEECCChhHHHHHHHHHhcCCCeEEEEecC
Q psy1042 118 FDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAG 150 (567)
Q Consensus 118 yDvIVVGsG~aG~~aA~~Lae~~G~~VlVLE~G 150 (567)
|||||||||++|+++|+.|++. |++|+|||+.
T Consensus 1 yDVvIVGaGpAG~~aA~~La~~-G~~V~l~E~~ 32 (388)
T TIGR02023 1 YDVAVIGGGPSGATAAETLARA-GIETILLERA 32 (388)
T ss_pred CeEEEECCCHHHHHHHHHHHhC-CCcEEEEECC
Confidence 7999999999999999999998 9999999985
No 147
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=98.01 E-value=5.4e-06 Score=83.85 Aligned_cols=34 Identities=41% Similarity=0.653 Sum_probs=32.2
Q ss_pred ccEEEECCChhHHHHHHHHHhcCCCeEEEEecCCC
Q psy1042 118 FDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIE 152 (567)
Q Consensus 118 yDvIVVGsG~aG~~aA~~Lae~~G~~VlVLE~G~~ 152 (567)
|||||||||++|+++|..|++. |.+|+|||+...
T Consensus 1 ~dv~IiGaG~aGl~~A~~l~~~-g~~v~vie~~~~ 34 (295)
T TIGR02032 1 YDVVVVGAGPAGASAAYRLADK-GLRVLLLEKKSF 34 (295)
T ss_pred CCEEEECCCHHHHHHHHHHHHC-CCeEEEEeccCC
Confidence 7999999999999999999998 999999999754
No 148
>PLN02463 lycopene beta cyclase
Probab=98.00 E-value=8.8e-06 Score=87.56 Aligned_cols=36 Identities=25% Similarity=0.483 Sum_probs=32.9
Q ss_pred CCcccEEEECCChhHHHHHHHHHhcCCCeEEEEecCC
Q psy1042 115 DMTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGI 151 (567)
Q Consensus 115 ~~~yDvIVVGsG~aG~~aA~~Lae~~G~~VlVLE~G~ 151 (567)
...|||||||||++|+++|..|+++ |++|+|||+.+
T Consensus 26 ~~~~DVvIVGaGpAGLalA~~La~~-Gl~V~liE~~~ 61 (447)
T PLN02463 26 SRVVDLVVVGGGPAGLAVAQQVSEA-GLSVCCIDPSP 61 (447)
T ss_pred ccCceEEEECCCHHHHHHHHHHHHC-CCeEEEeccCc
Confidence 3569999999999999999999998 99999999753
No 149
>PRK06116 glutathione reductase; Validated
Probab=97.96 E-value=7.2e-06 Score=88.79 Aligned_cols=34 Identities=44% Similarity=0.607 Sum_probs=32.5
Q ss_pred CcccEEEECCChhHHHHHHHHHhcCCCeEEEEecC
Q psy1042 116 MTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAG 150 (567)
Q Consensus 116 ~~yDvIVVGsG~aG~~aA~~Lae~~G~~VlVLE~G 150 (567)
..||+||||||++|+++|.+|++. |++|+|+|++
T Consensus 3 ~~~DvvVIG~GpaG~~aA~~~a~~-G~~V~liE~~ 36 (450)
T PRK06116 3 KDYDLIVIGGGSGGIASANRAAMY-GAKVALIEAK 36 (450)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHC-CCeEEEEecc
Confidence 469999999999999999999999 9999999986
No 150
>PRK06475 salicylate hydroxylase; Provisional
Probab=97.93 E-value=0.00013 Score=77.68 Aligned_cols=32 Identities=34% Similarity=0.494 Sum_probs=30.2
Q ss_pred cEEEECCChhHHHHHHHHHhcCCCeEEEEecCC
Q psy1042 119 DFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGI 151 (567)
Q Consensus 119 DvIVVGsG~aG~~aA~~Lae~~G~~VlVLE~G~ 151 (567)
+|+|||||++|+++|..|++. |++|+|+|+.+
T Consensus 4 ~V~IvGgGiaGl~~A~~L~~~-G~~V~i~E~~~ 35 (400)
T PRK06475 4 SPLIAGAGVAGLSAALELAAR-GWAVTIIEKAQ 35 (400)
T ss_pred cEEEECCCHHHHHHHHHHHhC-CCcEEEEecCC
Confidence 699999999999999999998 99999999864
No 151
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=97.91 E-value=9.9e-06 Score=88.77 Aligned_cols=58 Identities=22% Similarity=0.194 Sum_probs=44.1
Q ss_pred hHHHHhcCCCeEEecceEEEEEEeCCCCCCCCccEEEEEEEEeCCEEEEEEcCcEEEEcCCCCccHHHHH
Q psy1042 321 IRPIRKKRKNLTILTEAHVTRIICDKTPNKHKKLVAKSVEFFYKKKLRRARAKKEVISSAGAINSPKILM 390 (567)
Q Consensus 321 L~~a~~~~~gv~I~~~t~V~~I~~d~~~~~~~~~rv~GV~~~~~g~~~~v~A~k~VVLAAGa~~Tp~LLl 390 (567)
|...++ +.|++|+++++|++|..+ ++ ++.||++.++. ++.|+ .||+|+|...+-..|+
T Consensus 235 L~~~~~-~~G~~i~~~~~V~~I~~~--~~-----~~~gv~~~~g~---~~~ad-~vV~a~~~~~~~~~Ll 292 (493)
T TIGR02730 235 LVKGLE-KHGGQIRYRARVTKIILE--NG-----KAVGVKLADGE---KIYAK-RIVSNATRWDTFGKLL 292 (493)
T ss_pred HHHHHH-HCCCEEEeCCeeeEEEec--CC-----cEEEEEeCCCC---EEEcC-EEEECCChHHHHHHhC
Confidence 444555 689999999999999887 34 78999876542 57896 6999999876665443
No 152
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=97.91 E-value=1.1e-05 Score=85.68 Aligned_cols=37 Identities=27% Similarity=0.344 Sum_probs=33.7
Q ss_pred CCcccEEEECCChhHHHHHHHHHhcCCCeEEEEecCCC
Q psy1042 115 DMTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIE 152 (567)
Q Consensus 115 ~~~yDvIVVGsG~aG~~aA~~Lae~~G~~VlVLE~G~~ 152 (567)
...+||||||||++|+++|+.|+++ |.+|+|||+.+.
T Consensus 4 ~~~~dV~IvGaG~aGl~~A~~La~~-G~~v~liE~~~~ 40 (392)
T PRK08773 4 RSRRDAVIVGGGVVGAACALALADA-GLSVALVEGREP 40 (392)
T ss_pred CCCCCEEEECcCHHHHHHHHHHhcC-CCEEEEEeCCCC
Confidence 3568999999999999999999999 999999998753
No 153
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=97.91 E-value=1e-05 Score=85.90 Aligned_cols=35 Identities=31% Similarity=0.464 Sum_probs=32.8
Q ss_pred CcccEEEECCChhHHHHHHHHHhcCCCeEEEEecCC
Q psy1042 116 MTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGI 151 (567)
Q Consensus 116 ~~yDvIVVGsG~aG~~aA~~Lae~~G~~VlVLE~G~ 151 (567)
..|||||||||++|+++|..|++. |++|+|||+.+
T Consensus 4 ~~~dViIvGgG~aGl~~A~~La~~-G~~V~liE~~~ 38 (391)
T PRK08020 4 QPTDIAIVGGGMVGAALALGLAQH-GFSVAVLEHAA 38 (391)
T ss_pred ccccEEEECcCHHHHHHHHHHhcC-CCEEEEEcCCC
Confidence 569999999999999999999998 99999999864
No 154
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=97.90 E-value=1.1e-05 Score=85.39 Aligned_cols=36 Identities=33% Similarity=0.558 Sum_probs=33.4
Q ss_pred CcccEEEECCChhHHHHHHHHHhcCCCeEEEEecCCC
Q psy1042 116 MTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIE 152 (567)
Q Consensus 116 ~~yDvIVVGsG~aG~~aA~~Lae~~G~~VlVLE~G~~ 152 (567)
..+||||||||++|+++|..|++. |.+|+|||++..
T Consensus 4 ~~~dv~IvGgG~aGl~~A~~L~~~-G~~v~v~E~~~~ 39 (388)
T PRK07608 4 MKFDVVVVGGGLVGASLALALAQS-GLRVALLAPRAP 39 (388)
T ss_pred ccCCEEEECcCHHHHHHHHHHHhC-CCeEEEEecCCC
Confidence 468999999999999999999998 999999999755
No 155
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=97.89 E-value=1.1e-05 Score=87.86 Aligned_cols=36 Identities=36% Similarity=0.609 Sum_probs=33.4
Q ss_pred CCcccEEEECCChhHHHHHHHHHhcCCCeEEEEecCC
Q psy1042 115 DMTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGI 151 (567)
Q Consensus 115 ~~~yDvIVVGsG~aG~~aA~~Lae~~G~~VlVLE~G~ 151 (567)
...||+||||||++|+++|.+|++. |++|+|+|++.
T Consensus 2 ~~~ydvvVIG~GpaG~~aA~~aa~~-G~~v~lie~~~ 37 (472)
T PRK05976 2 AKEYDLVIIGGGPGGYVAAIRAGQL-GLKTALVEKGK 37 (472)
T ss_pred CccccEEEECCCHHHHHHHHHHHhC-CCeEEEEEccC
Confidence 4579999999999999999999998 99999999863
No 156
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=97.89 E-value=1e-05 Score=87.60 Aligned_cols=34 Identities=41% Similarity=0.631 Sum_probs=32.2
Q ss_pred cccEEEECCChhHHHHHHHHHhcCCCeEEEEecCC
Q psy1042 117 TFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGI 151 (567)
Q Consensus 117 ~yDvIVVGsG~aG~~aA~~Lae~~G~~VlVLE~G~ 151 (567)
+||+||||||++|++||.+|++. |++|+|+|++.
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~-G~~V~liE~~~ 35 (450)
T TIGR01421 2 HYDYLVIGGGSGGIASARRAAEH-GAKALLVEAKK 35 (450)
T ss_pred CCCEEEECcCHHHHHHHHHHHHC-CCcEEEecccc
Confidence 59999999999999999999999 99999999863
No 157
>KOG1399|consensus
Probab=97.88 E-value=9e-05 Score=79.19 Aligned_cols=37 Identities=30% Similarity=0.355 Sum_probs=33.5
Q ss_pred cccEEEECCChhHHHHHHHHHhcCCCeEEEEecCCCCC
Q psy1042 117 TFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIEEP 154 (567)
Q Consensus 117 ~yDvIVVGsG~aG~~aA~~Lae~~G~~VlVLE~G~~~~ 154 (567)
.-+|+|||+|++||++|..|.+. |+.|.|+||.+..+
T Consensus 6 ~~~vaIIGAG~sGL~~ar~l~~~-g~~v~vfEr~~~iG 42 (448)
T KOG1399|consen 6 SKDVAVIGAGPAGLAAARELLRE-GHEVVVFERTDDIG 42 (448)
T ss_pred CCceEEECcchHHHHHHHHHHHC-CCCceEEEecCCcc
Confidence 35899999999999999999998 99999999987654
No 158
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=97.87 E-value=1.2e-05 Score=86.75 Aligned_cols=35 Identities=37% Similarity=0.642 Sum_probs=32.9
Q ss_pred cccEEEECCChhHHHHHHHHHhcCCCeEEEEecCCC
Q psy1042 117 TFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIE 152 (567)
Q Consensus 117 ~yDvIVVGsG~aG~~aA~~Lae~~G~~VlVLE~G~~ 152 (567)
.|||||||||++|+.+|.+|++. |++|+|+|+++.
T Consensus 3 ~yDvvVIGgGpaGl~aA~~la~~-g~~V~lie~~~~ 37 (441)
T PRK08010 3 KYQAVIIGFGKAGKTLAVTLAKA-GWRVALIEQSNA 37 (441)
T ss_pred cCCEEEECCCHhHHHHHHHHHHC-CCeEEEEcCCCC
Confidence 59999999999999999999998 999999999753
No 159
>PRK06370 mercuric reductase; Validated
Probab=97.86 E-value=1.4e-05 Score=86.89 Aligned_cols=35 Identities=46% Similarity=0.691 Sum_probs=32.9
Q ss_pred CcccEEEECCChhHHHHHHHHHhcCCCeEEEEecCC
Q psy1042 116 MTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGI 151 (567)
Q Consensus 116 ~~yDvIVVGsG~aG~~aA~~Lae~~G~~VlVLE~G~ 151 (567)
.+||+||||||++|+++|.+|++. |++|+|+|++.
T Consensus 4 ~~~DvvVIG~GpaG~~aA~~aa~~-G~~v~lie~~~ 38 (463)
T PRK06370 4 QRYDAIVIGAGQAGPPLAARAAGL-GMKVALIERGL 38 (463)
T ss_pred ccccEEEECCCHHHHHHHHHHHhC-CCeEEEEecCc
Confidence 569999999999999999999999 99999999864
No 160
>PRK09126 hypothetical protein; Provisional
Probab=97.86 E-value=1.3e-05 Score=85.10 Aligned_cols=35 Identities=34% Similarity=0.461 Sum_probs=33.0
Q ss_pred cccEEEECCChhHHHHHHHHHhcCCCeEEEEecCCC
Q psy1042 117 TFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIE 152 (567)
Q Consensus 117 ~yDvIVVGsG~aG~~aA~~Lae~~G~~VlVLE~G~~ 152 (567)
+|||||||||++|+++|..|+++ |++|+|+||...
T Consensus 3 ~~dviIvGgG~aGl~~A~~L~~~-G~~v~v~E~~~~ 37 (392)
T PRK09126 3 HSDIVVVGAGPAGLSFARSLAGS-GLKVTLIERQPL 37 (392)
T ss_pred cccEEEECcCHHHHHHHHHHHhC-CCcEEEEeCCCc
Confidence 58999999999999999999999 999999999864
No 161
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=97.85 E-value=1.6e-05 Score=84.33 Aligned_cols=35 Identities=29% Similarity=0.306 Sum_probs=32.7
Q ss_pred CcccEEEECCChhHHHHHHHHHhcCCCeEEEEecCC
Q psy1042 116 MTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGI 151 (567)
Q Consensus 116 ~~yDvIVVGsG~aG~~aA~~Lae~~G~~VlVLE~G~ 151 (567)
..|||||||+|++|+++|..|+++ |.+|+|||+.+
T Consensus 6 ~~~dViIVGaG~~Gl~~A~~L~~~-G~~v~liE~~~ 40 (388)
T PRK07494 6 EHTDIAVIGGGPAGLAAAIALARA-GASVALVAPEP 40 (388)
T ss_pred CCCCEEEECcCHHHHHHHHHHhcC-CCeEEEEeCCC
Confidence 468999999999999999999998 99999999864
No 162
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=97.85 E-value=8.2e-05 Score=87.02 Aligned_cols=38 Identities=21% Similarity=0.193 Sum_probs=34.1
Q ss_pred cccEEEECCChhHHHHHHHHHhcCCCeEEEEecCCCCCC
Q psy1042 117 TFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIEEPF 155 (567)
Q Consensus 117 ~yDvIVVGsG~aG~~aA~~Lae~~G~~VlVLE~G~~~~~ 155 (567)
..+|+|||||+||++||..|++. |++|+|+|+.+..++
T Consensus 306 gkkVaVIGsGPAGLsaA~~Lar~-G~~VtVfE~~~~~GG 343 (944)
T PRK12779 306 KPPIAVVGSGPSGLINAYLLAVE-GFPVTVFEAFHDLGG 343 (944)
T ss_pred CCeEEEECCCHHHHHHHHHHHHC-CCeEEEEeeCCCCCc
Confidence 46899999999999999999998 999999999866543
No 163
>TIGR02352 thiamin_ThiO glycine oxidase ThiO. This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.
Probab=97.85 E-value=0.00015 Score=75.06 Aligned_cols=49 Identities=18% Similarity=0.223 Sum_probs=38.0
Q ss_pred CCCeEEecceEEEEEEeCCCCCCCCccEEEEEEEEeCCEEEEEEcCcEEEEcCCCCccHHHH
Q psy1042 328 RKNLTILTEAHVTRIICDKTPNKHKKLVAKSVEFFYKKKLRRARAKKEVISSAGAINSPKIL 389 (567)
Q Consensus 328 ~~gv~I~~~t~V~~I~~d~~~~~~~~~rv~GV~~~~~g~~~~v~A~k~VVLAAGa~~Tp~LL 389 (567)
+.|++|+.+++|+.|..+ ++ ++++|.+..+ +++|+ .||+|+|+ .++.|+
T Consensus 149 ~~g~~~~~~~~v~~i~~~--~~-----~~~~v~~~~g----~~~a~-~vV~a~G~-~~~~l~ 197 (337)
T TIGR02352 149 KLGVEIIEHTEVQHIEIR--GE-----KVTAIVTPSG----DVQAD-QVVLAAGA-WAGELL 197 (337)
T ss_pred HcCCEEEccceEEEEEee--CC-----EEEEEEcCCC----EEECC-EEEEcCCh-hhhhcc
Confidence 579999999999999875 44 6888875433 68896 69999997 455553
No 164
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=97.85 E-value=1.9e-05 Score=78.49 Aligned_cols=39 Identities=31% Similarity=0.488 Sum_probs=35.0
Q ss_pred cccEEEECCChhHHHHHHHHHhcCCCeEEEEecCCCCCCc
Q psy1042 117 TFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIEEPFF 156 (567)
Q Consensus 117 ~yDvIVVGsG~aG~~aA~~Lae~~G~~VlVLE~G~~~~~~ 156 (567)
.||+||||||.+|+++|..|++. |.+||||||-+..+++
T Consensus 1 ~fd~lIVGaGlsG~V~A~~a~~~-gk~VLIvekR~HIGGN 39 (374)
T COG0562 1 MFDYLIVGAGLSGAVIAEVAAQL-GKRVLIVEKRNHIGGN 39 (374)
T ss_pred CCcEEEECCchhHHHHHHHHHHc-CCEEEEEeccccCCCc
Confidence 38999999999999999988888 9999999998777544
No 165
>KOG2852|consensus
Probab=97.84 E-value=2.4e-05 Score=76.50 Aligned_cols=64 Identities=19% Similarity=0.268 Sum_probs=44.1
Q ss_pred hhHHHHhcCCCeEEecceEEEEEEeCCCCCCCCccEEEEEEEEe-CCEEEEEEcCcEEEEcCCCCccHHHHHhCCC
Q psy1042 320 FIRPIRKKRKNLTILTEAHVTRIICDKTPNKHKKLVAKSVEFFY-KKKLRRARAKKEVISSAGAINSPKILMLSGI 394 (567)
Q Consensus 320 ~L~~a~~~~~gv~I~~~t~V~~I~~d~~~~~~~~~rv~GV~~~~-~g~~~~v~A~k~VVLAAGa~~Tp~LLl~SGI 394 (567)
.+..+.+ +.|++++.+. |..|.-+ .. |+.+|.... .+..+...+. .||||||. +|++||..-+|
T Consensus 153 i~sea~k-~~~V~lv~Gk-v~ev~dE--k~-----r~n~v~~ae~~~ti~~~d~~-~ivvsaGP-WTskllp~~rI 217 (380)
T KOG2852|consen 153 ILSEAEK-RGGVKLVFGK-VKEVSDE--KH-----RINSVPKAEAEDTIIKADVH-KIVVSAGP-WTSKLLPFTRI 217 (380)
T ss_pred HHHHHHh-hcCeEEEEee-eEEeecc--cc-----cccccchhhhcCceEEeeee-EEEEecCC-Cchhhcccccc
Confidence 4556666 7889999884 6677522 33 777776652 2334456675 69999996 68999887765
No 166
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=97.84 E-value=1.4e-05 Score=85.27 Aligned_cols=34 Identities=41% Similarity=0.604 Sum_probs=32.2
Q ss_pred cccEEEECCChhHHHHHHHHHhcCCCeEEEEecCC
Q psy1042 117 TFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGI 151 (567)
Q Consensus 117 ~yDvIVVGsG~aG~~aA~~Lae~~G~~VlVLE~G~ 151 (567)
+|||+|||||++|+++|..|+++ |++|+|||+.+
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~-G~~v~viE~~~ 35 (405)
T PRK05714 2 RADLLIVGAGMVGSALALALQGS-GLEVLLLDGGP 35 (405)
T ss_pred CccEEEECccHHHHHHHHHHhcC-CCEEEEEcCCC
Confidence 48999999999999999999998 99999999875
No 167
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=97.84 E-value=1.4e-05 Score=86.35 Aligned_cols=33 Identities=33% Similarity=0.456 Sum_probs=31.7
Q ss_pred cccEEEECCChhHHHHHHHHHhcCCCeEEEEecC
Q psy1042 117 TFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAG 150 (567)
Q Consensus 117 ~yDvIVVGsG~aG~~aA~~Lae~~G~~VlVLE~G 150 (567)
+||+||||||+||++||.+|++. |++|+|+|++
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~-G~~V~lie~~ 34 (446)
T TIGR01424 2 DYDLFVIGAGSGGVRAARLAANH-GAKVAIAEEP 34 (446)
T ss_pred cccEEEECCCHHHHHHHHHHHhC-CCcEEEEecC
Confidence 59999999999999999999999 9999999985
No 168
>PRK08013 oxidoreductase; Provisional
Probab=97.83 E-value=1.6e-05 Score=84.65 Aligned_cols=35 Identities=29% Similarity=0.451 Sum_probs=32.7
Q ss_pred cccEEEECCChhHHHHHHHHHhcCCCeEEEEecCCC
Q psy1042 117 TFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIE 152 (567)
Q Consensus 117 ~yDvIVVGsG~aG~~aA~~Lae~~G~~VlVLE~G~~ 152 (567)
.|||||||||++|+++|..|++. |++|+|||+.+.
T Consensus 3 ~~dV~IvGaGpaGl~~A~~La~~-G~~v~viE~~~~ 37 (400)
T PRK08013 3 SVDVVIAGGGMVGLAVACGLQGS-GLRVAVLEQRVP 37 (400)
T ss_pred cCCEEEECcCHHHHHHHHHHhhC-CCEEEEEeCCCC
Confidence 48999999999999999999998 999999998754
No 169
>PLN02697 lycopene epsilon cyclase
Probab=97.83 E-value=2.5e-05 Score=85.60 Aligned_cols=35 Identities=34% Similarity=0.555 Sum_probs=32.3
Q ss_pred CCcccEEEECCChhHHHHHHHHHhcCCCeEEEEecC
Q psy1042 115 DMTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAG 150 (567)
Q Consensus 115 ~~~yDvIVVGsG~aG~~aA~~Lae~~G~~VlVLE~G 150 (567)
+..|||||||+|++|+++|..|++. |++|+|||++
T Consensus 106 ~~~~DVvIVGaGPAGLalA~~Lak~-Gl~V~LIe~~ 140 (529)
T PLN02697 106 DGTLDLVVIGCGPAGLALAAESAKL-GLNVGLIGPD 140 (529)
T ss_pred cCcccEEEECcCHHHHHHHHHHHhC-CCcEEEecCc
Confidence 3469999999999999999999998 9999999974
No 170
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=97.83 E-value=1.9e-05 Score=82.76 Aligned_cols=37 Identities=43% Similarity=0.632 Sum_probs=33.6
Q ss_pred ccEEEECCChhHHHHHHHHHhcCCCeEEEEecCCCCCC
Q psy1042 118 FDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIEEPF 155 (567)
Q Consensus 118 yDvIVVGsG~aG~~aA~~Lae~~G~~VlVLE~G~~~~~ 155 (567)
||+||||||++|+++|.+|++. |.+|+|||+....++
T Consensus 2 ~DvvIIGaG~aGlsaA~~La~~-G~~V~viEk~~~iGG 38 (377)
T TIGR00031 2 FDYIIVGAGLSGIVLANILAQL-NKRVLVVEKRNHIGG 38 (377)
T ss_pred CcEEEECCCHHHHHHHHHHHhC-CCeEEEEecCCCCCC
Confidence 7999999999999999999998 999999999765543
No 171
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=97.82 E-value=0.00074 Score=73.09 Aligned_cols=37 Identities=30% Similarity=0.346 Sum_probs=33.4
Q ss_pred CcccEEEECCChhHHHHHHHHHhcCCCeEEEEecCCCC
Q psy1042 116 MTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIEE 153 (567)
Q Consensus 116 ~~yDvIVVGsG~aG~~aA~~Lae~~G~~VlVLE~G~~~ 153 (567)
..+||+|||||++|+++|..|++. |++|+|+|+.+..
T Consensus 132 ~~~~V~IIG~G~aGl~aA~~l~~~-G~~V~vie~~~~~ 168 (449)
T TIGR01316 132 THKKVAVIGAGPAGLACASELAKA-GHSVTVFEALHKP 168 (449)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHC-CCcEEEEecCCCC
Confidence 457999999999999999999998 9999999987543
No 172
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.81 E-value=1.8e-05 Score=85.97 Aligned_cols=35 Identities=37% Similarity=0.615 Sum_probs=33.1
Q ss_pred CcccEEEECCChhHHHHHHHHHhcCCCeEEEEecCC
Q psy1042 116 MTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGI 151 (567)
Q Consensus 116 ~~yDvIVVGsG~aG~~aA~~Lae~~G~~VlVLE~G~ 151 (567)
.+||+||||||++|+++|.+|++. |++|+|+|++.
T Consensus 3 ~~yDvvVIGaGpaG~~aA~~aa~~-G~~V~liE~~~ 37 (462)
T PRK06416 3 FEYDVIVIGAGPGGYVAAIRAAQL-GLKVAIVEKEK 37 (462)
T ss_pred ccccEEEECCCHHHHHHHHHHHHC-CCcEEEEeccc
Confidence 569999999999999999999999 99999999875
No 173
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=97.81 E-value=1.9e-05 Score=85.27 Aligned_cols=35 Identities=43% Similarity=0.614 Sum_probs=32.9
Q ss_pred cccEEEECCChhHHHHHHHHHhcCCCeEEEEecCCC
Q psy1042 117 TFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIE 152 (567)
Q Consensus 117 ~yDvIVVGsG~aG~~aA~~Lae~~G~~VlVLE~G~~ 152 (567)
.||+||||||+||+++|.+|++. |++|+|+|+++.
T Consensus 3 ~~dvvVIG~GpaG~~aA~~l~~~-g~~V~liE~~~~ 37 (438)
T PRK07251 3 TYDLIVIGFGKAGKTLAAKLASA-GKKVALVEESKA 37 (438)
T ss_pred ccCEEEECCCHHHHHHHHHHHhC-CCEEEEEecCCc
Confidence 59999999999999999999998 999999999753
No 174
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=97.81 E-value=0.00011 Score=79.49 Aligned_cols=34 Identities=32% Similarity=0.473 Sum_probs=27.7
Q ss_pred cEEEECCChhHHHHHHHHHhcCC---CeEEEEecCCCC
Q psy1042 119 DFIIIGAGSAGCVLANRLSEIKK---WKVLLLEAGIEE 153 (567)
Q Consensus 119 DvIVVGsG~aG~~aA~~Lae~~G---~~VlVLE~G~~~ 153 (567)
||||||||+||..+|..|++. + .+|+|||+....
T Consensus 1 ~v~IvGgG~aG~~~A~~L~~~-~~~~~~v~lie~~~~~ 37 (454)
T PF04820_consen 1 DVVIVGGGTAGWMAAAALARA-GPDALSVTLIESPDIP 37 (454)
T ss_dssp EEEEE--SHHHHHHHHHHHHH-CTCSSEEEEEE-SSS-
T ss_pred CEEEECCCHHHHHHHHHHHHh-CCCCcEEEEEecCCCC
Confidence 799999999999999999998 6 899999987554
No 175
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=97.81 E-value=2.2e-05 Score=85.33 Aligned_cols=37 Identities=24% Similarity=0.399 Sum_probs=33.9
Q ss_pred CcccEEEECCChhHHHHHHHHHhcCCCeEEEEecCCCC
Q psy1042 116 MTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIEE 153 (567)
Q Consensus 116 ~~yDvIVVGsG~aG~~aA~~Lae~~G~~VlVLE~G~~~ 153 (567)
..||+||||||++|+.+|.+|++. |++|+|+|++...
T Consensus 4 ~~yDvvVIGaGpaG~~aA~~la~~-G~~v~liE~~~~~ 40 (461)
T PRK05249 4 YDYDLVVIGSGPAGEGAAMQAAKL-GKRVAVIERYRNV 40 (461)
T ss_pred ccccEEEECCCHHHHHHHHHHHhC-CCEEEEEeccccc
Confidence 459999999999999999999999 9999999997554
No 176
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.80 E-value=2.2e-05 Score=85.57 Aligned_cols=37 Identities=22% Similarity=0.343 Sum_probs=33.7
Q ss_pred CcccEEEECCChhHHHHHHHHHhcCCCeEEEEecCCCC
Q psy1042 116 MTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIEE 153 (567)
Q Consensus 116 ~~yDvIVVGsG~aG~~aA~~Lae~~G~~VlVLE~G~~~ 153 (567)
..||+||||+|++|..+|.+|++. |++|+|||+.+..
T Consensus 3 ~~~DvvVIG~GpaG~~aA~~aa~~-G~~V~lie~~~~~ 39 (471)
T PRK06467 3 IKTQVVVLGAGPAGYSAAFRAADL-GLETVCVERYSTL 39 (471)
T ss_pred ccceEEEECCCHHHHHHHHHHHHC-CCcEEEEecCCcc
Confidence 469999999999999999999998 9999999986543
No 177
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=97.79 E-value=2.1e-05 Score=87.35 Aligned_cols=36 Identities=31% Similarity=0.404 Sum_probs=33.2
Q ss_pred CcccEEEECCChhHHHHHHHHHhcCCCeEEEEecCCC
Q psy1042 116 MTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIE 152 (567)
Q Consensus 116 ~~yDvIVVGsG~aG~~aA~~Lae~~G~~VlVLE~G~~ 152 (567)
..|||||||||+||++||.+|++. |++|+|||++..
T Consensus 3 ~~yDVvIIGgGpAGL~AA~~lar~-g~~V~liE~~~~ 38 (555)
T TIGR03143 3 EIYDLIIIGGGPAGLSAGIYAGRA-KLDTLIIEKDDF 38 (555)
T ss_pred CcCcEEEECCCHHHHHHHHHHHHC-CCCEEEEecCCC
Confidence 459999999999999999999998 999999999743
No 178
>PTZ00058 glutathione reductase; Provisional
Probab=97.77 E-value=2.2e-05 Score=86.80 Aligned_cols=35 Identities=43% Similarity=0.634 Sum_probs=32.9
Q ss_pred CcccEEEECCChhHHHHHHHHHhcCCCeEEEEecCC
Q psy1042 116 MTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGI 151 (567)
Q Consensus 116 ~~yDvIVVGsG~aG~~aA~~Lae~~G~~VlVLE~G~ 151 (567)
.+||+||||||++|.++|.+|++. |.+|+|||++.
T Consensus 47 ~~yDvvVIG~G~aG~~aA~~aa~~-G~~ValIEk~~ 81 (561)
T PTZ00058 47 MVYDLIVIGGGSGGMAAARRAARN-KAKVALVEKDY 81 (561)
T ss_pred ccccEEEECcCHHHHHHHHHHHHc-CCeEEEEeccc
Confidence 569999999999999999999999 99999999863
No 179
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.77 E-value=2.3e-05 Score=85.22 Aligned_cols=33 Identities=33% Similarity=0.554 Sum_probs=31.3
Q ss_pred cccEEEECCChhHHHHHHHHHhcCCCeEEEEecC
Q psy1042 117 TFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAG 150 (567)
Q Consensus 117 ~yDvIVVGsG~aG~~aA~~Lae~~G~~VlVLE~G 150 (567)
.||+||||+|+||++||.+|++. |++|+|||+.
T Consensus 3 ~~DvvVIG~GpaG~~AA~~aa~~-G~~V~liE~~ 35 (466)
T PRK06115 3 SYDVVIIGGGPGGYNAAIRAGQL-GLKVACVEGR 35 (466)
T ss_pred cccEEEECCCHHHHHHHHHHHhC-CCeEEEEecC
Confidence 49999999999999999999999 9999999974
No 180
>PRK09897 hypothetical protein; Provisional
Probab=97.76 E-value=0.00045 Score=75.80 Aligned_cols=36 Identities=22% Similarity=0.267 Sum_probs=30.5
Q ss_pred ccEEEECCChhHHHHHHHHHhc-CCCeEEEEecCCCC
Q psy1042 118 FDFIIIGAGSAGCVLANRLSEI-KKWKVLLLEAGIEE 153 (567)
Q Consensus 118 yDvIVVGsG~aG~~aA~~Lae~-~G~~VlVLE~G~~~ 153 (567)
.+|+|||+|++|+++|.+|++. ...+|+|+|++...
T Consensus 2 ~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~~ 38 (534)
T PRK09897 2 KKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADEA 38 (534)
T ss_pred CeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCCC
Confidence 4799999999999999999985 24699999986543
No 181
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=97.76 E-value=2.4e-05 Score=82.92 Aligned_cols=34 Identities=24% Similarity=0.468 Sum_probs=31.9
Q ss_pred cccEEEECCChhHHHHHHHHHhcCCCeEEEEecCC
Q psy1042 117 TFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGI 151 (567)
Q Consensus 117 ~yDvIVVGsG~aG~~aA~~Lae~~G~~VlVLE~G~ 151 (567)
+|||||||||++|+++|..|++. |++|+|+|+.+
T Consensus 3 ~~dv~IvGgG~aGl~~A~~L~~~-G~~v~l~E~~~ 36 (384)
T PRK08849 3 KYDIAVVGGGMVGAATALGFAKQ-GRSVAVIEGGE 36 (384)
T ss_pred cccEEEECcCHHHHHHHHHHHhC-CCcEEEEcCCC
Confidence 48999999999999999999998 99999999764
No 182
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.76 E-value=2.5e-05 Score=84.96 Aligned_cols=34 Identities=29% Similarity=0.562 Sum_probs=32.2
Q ss_pred cccEEEECCChhHHHHHHHHHhcCCCeEEEEecCC
Q psy1042 117 TFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGI 151 (567)
Q Consensus 117 ~yDvIVVGsG~aG~~aA~~Lae~~G~~VlVLE~G~ 151 (567)
.||+||||||++|++||.+|++. |++|+|||++.
T Consensus 4 ~~DvvIIG~GpaG~~AA~~aa~~-G~~V~lie~~~ 37 (466)
T PRK07818 4 HYDVVVLGAGPGGYVAAIRAAQL-GLKTAVVEKKY 37 (466)
T ss_pred cCCEEEECCCHHHHHHHHHHHhC-CCeEEEEecCC
Confidence 59999999999999999999999 99999999863
No 183
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=97.76 E-value=2.5e-05 Score=79.54 Aligned_cols=64 Identities=17% Similarity=0.279 Sum_probs=47.0
Q ss_pred hhHHHHhcCCCeEEecceEEEEEEeCCCCCCCCccEEEEEEEEeC-CEEEEEEcCcEEEEcCCCCccHHHHHhCCC
Q psy1042 320 FIRPIRKKRKNLTILTEAHVTRIICDKTPNKHKKLVAKSVEFFYK-KKLRRARAKKEVISSAGAINSPKILMLSGI 394 (567)
Q Consensus 320 ~L~~a~~~~~gv~I~~~t~V~~I~~d~~~~~~~~~rv~GV~~~~~-g~~~~v~A~k~VVLAAGa~~Tp~LLl~SGI 394 (567)
....+.+ +.++.+++++.+.+|.-+ .+.+|++.+. ++...+..+ .|+++.|..-...++...++
T Consensus 184 ~~~~l~~-~~~i~~~~~~~i~ei~G~---------~v~~v~l~~~~~~~~~~~~~-gvf~~iG~~p~~~~~~~~~~ 248 (305)
T COG0492 184 LVERLKK-NVKIEVLTNTVVKEILGD---------DVEGVVLKNVKGEEKELPVD-GVFIAIGHLPNTELLKGLGV 248 (305)
T ss_pred HHHHHHh-cCCeEEEeCCceeEEecC---------ccceEEEEecCCceEEEEec-eEEEecCCCCchHHHhhccc
Confidence 3444444 458999999999999744 2567777764 667788886 79999998777777776554
No 184
>KOG2311|consensus
Probab=97.75 E-value=6.3e-05 Score=78.18 Aligned_cols=35 Identities=34% Similarity=0.631 Sum_probs=31.8
Q ss_pred CCcccEEEECCChhHHHHHHHHHhcCCCeEEEEecC
Q psy1042 115 DMTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAG 150 (567)
Q Consensus 115 ~~~yDvIVVGsG~aG~~aA~~Lae~~G~~VlVLE~G 150 (567)
+..|||||||||-|||-||...|+. |.+.+||-..
T Consensus 26 ~~~~dVvVIGgGHAG~EAAaAaaR~-Ga~TlLlT~~ 60 (679)
T KOG2311|consen 26 TSTYDVVVIGGGHAGCEAAAAAARL-GARTLLLTHN 60 (679)
T ss_pred CCcccEEEECCCccchHHHHHHHhc-CCceEEeecc
Confidence 5679999999999999999999998 9999999753
No 185
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=97.75 E-value=2.8e-05 Score=84.45 Aligned_cols=32 Identities=38% Similarity=0.676 Sum_probs=31.0
Q ss_pred cccEEEECCChhHHHHHHHHHhcCCCeEEEEec
Q psy1042 117 TFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEA 149 (567)
Q Consensus 117 ~yDvIVVGsG~aG~~aA~~Lae~~G~~VlVLE~ 149 (567)
+||+||||||++|+.+|.+|++. |++|+|||+
T Consensus 1 ~yDvvVIG~G~aGl~aA~~la~~-G~~v~lie~ 32 (461)
T TIGR01350 1 AYDVVVIGGGPGGYVAAIRAAQL-GLKVALVEK 32 (461)
T ss_pred CccEEEECCCHHHHHHHHHHHhC-CCeEEEEec
Confidence 49999999999999999999998 999999999
No 186
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=97.75 E-value=2.5e-05 Score=82.39 Aligned_cols=33 Identities=36% Similarity=0.530 Sum_probs=31.4
Q ss_pred cEEEECCChhHHHHHHHHHhcCCCeEEEEecCCC
Q psy1042 119 DFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIE 152 (567)
Q Consensus 119 DvIVVGsG~aG~~aA~~Lae~~G~~VlVLE~G~~ 152 (567)
||||||||++|+++|..|+++ |.+|+|+||.+.
T Consensus 1 dViIvGaG~aGl~~A~~L~~~-G~~v~v~Er~~~ 33 (385)
T TIGR01988 1 DIVIVGGGMVGLALALALARS-GLKIALIEATPA 33 (385)
T ss_pred CEEEECCCHHHHHHHHHHhcC-CCEEEEEeCCCc
Confidence 899999999999999999999 999999999865
No 187
>KOG0029|consensus
Probab=97.73 E-value=3.1e-05 Score=84.15 Aligned_cols=39 Identities=36% Similarity=0.404 Sum_probs=35.5
Q ss_pred CcccEEEECCChhHHHHHHHHHhcCCCeEEEEecCCCCCC
Q psy1042 116 MTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIEEPF 155 (567)
Q Consensus 116 ~~yDvIVVGsG~aG~~aA~~Lae~~G~~VlVLE~G~~~~~ 155 (567)
...+|||||||++|++||..|.+. |.+|+|||+-++.++
T Consensus 14 ~~~~VIVIGAGiaGLsAArqL~~~-G~~V~VLEARdRvGG 52 (501)
T KOG0029|consen 14 KKKKVIVIGAGLAGLSAARQLQDF-GFDVLVLEARDRVGG 52 (501)
T ss_pred CCCcEEEECCcHHHHHHHHHHHHc-CCceEEEeccCCcCc
Confidence 457999999999999999999999 999999999877654
No 188
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=97.73 E-value=2.9e-05 Score=78.88 Aligned_cols=55 Identities=18% Similarity=0.203 Sum_probs=41.4
Q ss_pred CCeEEecceEEEEEEeCCCCCCCCccEEEEEEEEe--CCEEEEEEcCcEEEEcCCCCccHHHHHhC
Q psy1042 329 KNLTILTEAHVTRIICDKTPNKHKKLVAKSVEFFY--KKKLRRARAKKEVISSAGAINSPKILMLS 392 (567)
Q Consensus 329 ~gv~I~~~t~V~~I~~d~~~~~~~~~rv~GV~~~~--~g~~~~v~A~k~VVLAAGa~~Tp~LLl~S 392 (567)
.|+++++++.|++|..+ + ++.+|++.+ .++..++.++ .||+|+|.-..+.+|..+
T Consensus 190 ~gv~~~~~~~v~~i~~~---~-----~~~~v~~~~~~~g~~~~i~~D-~vi~a~G~~~~~~~l~~~ 246 (300)
T TIGR01292 190 PNIEFLWNSTVKEIVGD---N-----KVEGVKIKNTVTGEEEELKVD-GVFIAIGHEPNTELLKGL 246 (300)
T ss_pred CCeEEEeccEEEEEEcc---C-----cEEEEEEEecCCCceEEEEcc-EEEEeeCCCCChHHHHHh
Confidence 49999999999999743 2 567777653 3556789996 799999966666666654
No 189
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=97.73 E-value=3.1e-05 Score=84.82 Aligned_cols=36 Identities=33% Similarity=0.456 Sum_probs=33.5
Q ss_pred ccEEEECCChhHHHHHHHHHhcCCCeEEEEecCCCCC
Q psy1042 118 FDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIEEP 154 (567)
Q Consensus 118 yDvIVVGsG~aG~~aA~~Lae~~G~~VlVLE~G~~~~ 154 (567)
-||||||||.+|++||..|+++ |++|+||||....+
T Consensus 2 ~dvvIIGaG~~GL~aa~~La~~-G~~v~vlE~~~~~G 37 (492)
T TIGR02733 2 TSVVVIGAGIAGLTAAALLAKR-GYRVTLLEQHAQPG 37 (492)
T ss_pred CeEEEECcCHHHHHHHHHHHHC-CCeEEEEecCCCCC
Confidence 4899999999999999999999 99999999987764
No 190
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=97.73 E-value=2.9e-05 Score=84.70 Aligned_cols=33 Identities=42% Similarity=0.657 Sum_probs=31.7
Q ss_pred CcccEEEECCChhHHHHHHHHHhcCCCeEEEEec
Q psy1042 116 MTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEA 149 (567)
Q Consensus 116 ~~yDvIVVGsG~aG~~aA~~Lae~~G~~VlVLE~ 149 (567)
.+||+||||||++|+++|.+|++. |.+|+|||+
T Consensus 3 ~~~DviIIG~G~aG~~aA~~~~~~-g~~v~lie~ 35 (475)
T PRK06327 3 KQFDVVVIGAGPGGYVAAIRAAQL-GLKVACIEA 35 (475)
T ss_pred cceeEEEECCCHHHHHHHHHHHhC-CCeEEEEec
Confidence 469999999999999999999998 999999998
No 191
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=97.72 E-value=3.2e-05 Score=82.92 Aligned_cols=36 Identities=42% Similarity=0.657 Sum_probs=33.5
Q ss_pred CcccEEEECCChhHHHHHHHHHhcCCCeEEEEecCCC
Q psy1042 116 MTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIE 152 (567)
Q Consensus 116 ~~yDvIVVGsG~aG~~aA~~Lae~~G~~VlVLE~G~~ 152 (567)
.+||+||||+|++|.++|.++|+. |.+|+|+|+++.
T Consensus 3 ~~yDvvVIG~GpaG~~aA~raa~~-G~kvalvE~~~~ 38 (454)
T COG1249 3 KEYDVVVIGAGPAGYVAAIRAAQL-GLKVALVEKGER 38 (454)
T ss_pred ccccEEEECCCHHHHHHHHHHHhC-CCCEEEEeecCC
Confidence 579999999999999999999999 999999999753
No 192
>PRK14694 putative mercuric reductase; Provisional
Probab=97.72 E-value=3.3e-05 Score=84.08 Aligned_cols=36 Identities=28% Similarity=0.432 Sum_probs=33.6
Q ss_pred CCcccEEEECCChhHHHHHHHHHhcCCCeEEEEecCC
Q psy1042 115 DMTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGI 151 (567)
Q Consensus 115 ~~~yDvIVVGsG~aG~~aA~~Lae~~G~~VlVLE~G~ 151 (567)
+..||+||||||++|+++|.+|++. |++|+|+|++.
T Consensus 4 ~~~~dviVIGaG~aG~~aA~~l~~~-g~~v~lie~~~ 39 (468)
T PRK14694 4 DNNLHIAVIGSGGSAMAAALKATER-GARVTLIERGT 39 (468)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHhC-CCcEEEEEccc
Confidence 4679999999999999999999999 99999999974
No 193
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=97.71 E-value=3.1e-05 Score=84.21 Aligned_cols=33 Identities=33% Similarity=0.577 Sum_probs=31.6
Q ss_pred ccEEEECCChhHHHHHHHHHhcCCCeEEEEecCC
Q psy1042 118 FDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGI 151 (567)
Q Consensus 118 yDvIVVGsG~aG~~aA~~Lae~~G~~VlVLE~G~ 151 (567)
||+||||||++|+++|.+|++. |++|+|+|++.
T Consensus 1 yDvvVIGaGpaG~~aA~~aa~~-g~~v~lie~~~ 33 (463)
T TIGR02053 1 YDLVIIGSGAAAFAAAIKAAEL-GASVAMVERGP 33 (463)
T ss_pred CCEEEECCCHHHHHHHHHHHHC-CCeEEEEeCCc
Confidence 7999999999999999999998 99999999865
No 194
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=97.71 E-value=3.1e-05 Score=82.08 Aligned_cols=33 Identities=33% Similarity=0.497 Sum_probs=30.9
Q ss_pred cEEEECCChhHHHHHHHHHhcCCCeEEEEecCCC
Q psy1042 119 DFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIE 152 (567)
Q Consensus 119 DvIVVGsG~aG~~aA~~Lae~~G~~VlVLE~G~~ 152 (567)
||||||||++|+++|..|++. |++|+|||+.+.
T Consensus 1 DviIiGaG~AGl~~A~~la~~-g~~v~liE~~~~ 33 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELARP-GLRVQLIEPHPP 33 (388)
T ss_pred CEEEECCCHHHHHHHHHHHhC-CCeEEEEccCCC
Confidence 899999999999999999998 999999998753
No 195
>PTZ00052 thioredoxin reductase; Provisional
Probab=97.69 E-value=3.5e-05 Score=84.51 Aligned_cols=34 Identities=29% Similarity=0.484 Sum_probs=31.9
Q ss_pred CcccEEEECCChhHHHHHHHHHhcCCCeEEEEecC
Q psy1042 116 MTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAG 150 (567)
Q Consensus 116 ~~yDvIVVGsG~aG~~aA~~Lae~~G~~VlVLE~G 150 (567)
..||+||||+|++|++||.+|++. |++|+|||++
T Consensus 4 ~~yDviVIG~GpaG~~AA~~aa~~-G~~V~lie~~ 37 (499)
T PTZ00052 4 FMYDLVVIGGGSGGMAAAKEAAAH-GKKVALFDYV 37 (499)
T ss_pred cccCEEEECCCHHHHHHHHHHHhC-CCeEEEEecc
Confidence 359999999999999999999999 9999999974
No 196
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=97.69 E-value=3e-05 Score=83.66 Aligned_cols=33 Identities=45% Similarity=0.672 Sum_probs=31.0
Q ss_pred ccEEEECCChhHHHHHHHHHh----cCCCeEEEEecCC
Q psy1042 118 FDFIIIGAGSAGCVLANRLSE----IKKWKVLLLEAGI 151 (567)
Q Consensus 118 yDvIVVGsG~aG~~aA~~Lae----~~G~~VlVLE~G~ 151 (567)
|||||||||++|+++|+.|++ . |++|+|||+.+
T Consensus 1 ~DV~IVGaGp~Gl~~A~~La~~~~~~-G~~v~viE~~~ 37 (437)
T TIGR01989 1 FDVVIVGGGPVGLALAAALGNNPLTK-DLKVLLLDAVD 37 (437)
T ss_pred CcEEEECCcHHHHHHHHHHhcCcccC-CCeEEEEeCCC
Confidence 799999999999999999998 6 99999999853
No 197
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=97.68 E-value=3.7e-05 Score=82.04 Aligned_cols=33 Identities=33% Similarity=0.553 Sum_probs=31.5
Q ss_pred cccEEEECCChhHHHHHHHHHhcCCCeEEEEecC
Q psy1042 117 TFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAG 150 (567)
Q Consensus 117 ~yDvIVVGsG~aG~~aA~~Lae~~G~~VlVLE~G 150 (567)
.|||+|||+|++|+++|..|++. |++|+|||+.
T Consensus 4 ~~dV~IvGaG~~Gl~~A~~L~~~-G~~v~viE~~ 36 (405)
T PRK08850 4 SVDVAIIGGGMVGLALAAALKES-DLRIAVIEGQ 36 (405)
T ss_pred cCCEEEECccHHHHHHHHHHHhC-CCEEEEEcCC
Confidence 58999999999999999999998 9999999985
No 198
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=97.68 E-value=3.9e-05 Score=83.36 Aligned_cols=33 Identities=48% Similarity=0.773 Sum_probs=31.5
Q ss_pred cccEEEECCChhHHHHHHHHHhcCCCeEEEEecC
Q psy1042 117 TFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAG 150 (567)
Q Consensus 117 ~yDvIVVGsG~aG~~aA~~Lae~~G~~VlVLE~G 150 (567)
.||+||||||++|+++|.+|++. |++|+|||++
T Consensus 3 ~yDvvIIG~G~aGl~aA~~l~~~-g~~v~lie~~ 35 (460)
T PRK06292 3 KYDVIVIGAGPAGYVAARRAAKL-GKKVALIEKG 35 (460)
T ss_pred cccEEEECCCHHHHHHHHHHHHC-CCeEEEEeCC
Confidence 59999999999999999999998 9999999994
No 199
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=97.68 E-value=3.7e-05 Score=81.27 Aligned_cols=33 Identities=42% Similarity=0.576 Sum_probs=31.2
Q ss_pred cEEEECCChhHHHHHHHHHhcCC-CeEEEEecCCC
Q psy1042 119 DFIIIGAGSAGCVLANRLSEIKK-WKVLLLEAGIE 152 (567)
Q Consensus 119 DvIVVGsG~aG~~aA~~Lae~~G-~~VlVLE~G~~ 152 (567)
||||||||++|+++|..|++. | ++|+|+||.+.
T Consensus 1 dv~IvGaG~aGl~~A~~L~~~-G~~~v~v~E~~~~ 34 (382)
T TIGR01984 1 DVIIVGGGLVGLSLALALSRL-GKIKIALIEANSP 34 (382)
T ss_pred CEEEECccHHHHHHHHHHhcC-CCceEEEEeCCCc
Confidence 899999999999999999999 9 99999998754
No 200
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=97.67 E-value=3.6e-05 Score=81.29 Aligned_cols=33 Identities=45% Similarity=0.664 Sum_probs=30.1
Q ss_pred cEEEECCChhHHHHHHHH--HhcCCCeEEEEecCCC
Q psy1042 119 DFIIIGAGSAGCVLANRL--SEIKKWKVLLLEAGIE 152 (567)
Q Consensus 119 DvIVVGsG~aG~~aA~~L--ae~~G~~VlVLE~G~~ 152 (567)
||||||+|+||+++|.+| ++. |.+|+|||+...
T Consensus 1 DviIvGaGpAGlslA~~l~~~~~-g~~Vllid~~~~ 35 (374)
T PF05834_consen 1 DVIIVGAGPAGLSLARRLADARP-GLSVLLIDPKPK 35 (374)
T ss_pred CEEEECCcHHHHHHHHHHHhcCC-CCEEEEEcCCcc
Confidence 899999999999999999 665 999999998654
No 201
>PRK07190 hypothetical protein; Provisional
Probab=97.66 E-value=4.4e-05 Score=83.38 Aligned_cols=36 Identities=22% Similarity=0.263 Sum_probs=33.1
Q ss_pred CcccEEEECCChhHHHHHHHHHhcCCCeEEEEecCCC
Q psy1042 116 MTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIE 152 (567)
Q Consensus 116 ~~yDvIVVGsG~aG~~aA~~Lae~~G~~VlVLE~G~~ 152 (567)
..+||||||||++|+++|..|++. |.+|+||||.+.
T Consensus 4 ~~~dVlIVGAGPaGL~lA~~Lar~-Gi~V~llEr~~~ 39 (487)
T PRK07190 4 QVTDVVIIGAGPVGLMCAYLGQLC-GLNTVIVDKSDG 39 (487)
T ss_pred ccceEEEECCCHHHHHHHHHHHHc-CCCEEEEeCCCc
Confidence 458999999999999999999998 999999998753
No 202
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=97.65 E-value=3.9e-05 Score=84.27 Aligned_cols=59 Identities=20% Similarity=0.186 Sum_probs=43.7
Q ss_pred hhHHHHhcCCCeEEecceEEEEEEeCCCCCCCCccEEEEEEEEeCCEEEEEEcCcEEEEcCCCCccHHHHH
Q psy1042 320 FIRPIRKKRKNLTILTEAHVTRIICDKTPNKHKKLVAKSVEFFYKKKLRRARAKKEVISSAGAINSPKILM 390 (567)
Q Consensus 320 ~L~~a~~~~~gv~I~~~t~V~~I~~d~~~~~~~~~rv~GV~~~~~g~~~~v~A~k~VVLAAGa~~Tp~LLl 390 (567)
.|...++ +.|++|++++.|++|..+ ++ ++++|++.++ + ++.|+ .||+|++...+-..|+
T Consensus 224 al~~~~~-~~G~~i~~~~~V~~i~~~--~~-----~~~~V~~~~g-~--~~~ad-~VI~a~~~~~~~~~l~ 282 (502)
T TIGR02734 224 AMAKLAE-DLGGELRLNAEVIRIETE--GG-----RATAVHLADG-E--RLDAD-AVVSNADLHHTYRRLL 282 (502)
T ss_pred HHHHHHH-HCCCEEEECCeEEEEEee--CC-----EEEEEEECCC-C--EEECC-EEEECCcHHHHHHHhc
Confidence 3444444 579999999999999887 34 7889887554 2 57896 6999999766665554
No 203
>PTZ00367 squalene epoxidase; Provisional
Probab=97.65 E-value=4.5e-05 Score=84.39 Aligned_cols=35 Identities=46% Similarity=0.653 Sum_probs=32.7
Q ss_pred CcccEEEECCChhHHHHHHHHHhcCCCeEEEEecCC
Q psy1042 116 MTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGI 151 (567)
Q Consensus 116 ~~yDvIVVGsG~aG~~aA~~Lae~~G~~VlVLE~G~ 151 (567)
.+|||||||||++|+++|..|+++ |++|+||||..
T Consensus 32 ~~~dViIVGaGiaGlalA~aLar~-G~~V~VlEr~~ 66 (567)
T PTZ00367 32 YDYDVIIVGGSIAGPVLAKALSKQ-GRKVLMLERDL 66 (567)
T ss_pred cCccEEEECCCHHHHHHHHHHHhc-CCEEEEEcccc
Confidence 469999999999999999999998 99999999864
No 204
>PRK13748 putative mercuric reductase; Provisional
Probab=97.64 E-value=4.7e-05 Score=84.85 Aligned_cols=34 Identities=29% Similarity=0.402 Sum_probs=32.4
Q ss_pred CcccEEEECCChhHHHHHHHHHhcCCCeEEEEecC
Q psy1042 116 MTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAG 150 (567)
Q Consensus 116 ~~yDvIVVGsG~aG~~aA~~Lae~~G~~VlVLE~G 150 (567)
..||+||||+|++|+++|.+|++. |++|+|||++
T Consensus 97 ~~~DvvVIG~GpaG~~aA~~~~~~-G~~v~lie~~ 130 (561)
T PRK13748 97 RPLHVAVIGSGGAAMAAALKAVEQ-GARVTLIERG 130 (561)
T ss_pred CCCCEEEECcCHHHHHHHHHHHhC-CCeEEEEecC
Confidence 469999999999999999999999 9999999987
No 205
>PLN02268 probable polyamine oxidase
Probab=97.64 E-value=5.3e-05 Score=81.65 Aligned_cols=37 Identities=35% Similarity=0.387 Sum_probs=34.0
Q ss_pred cEEEECCChhHHHHHHHHHhcCCCeEEEEecCCCCCCc
Q psy1042 119 DFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIEEPFF 156 (567)
Q Consensus 119 DvIVVGsG~aG~~aA~~Lae~~G~~VlVLE~G~~~~~~ 156 (567)
+|||||||++|++||++|.++ |++|+|||+.+..++.
T Consensus 2 ~VvVIGaGisGL~aA~~L~~~-g~~v~vlEa~~r~GGr 38 (435)
T PLN02268 2 SVIVIGGGIAGIAAARALHDA-SFKVTLLESRDRIGGR 38 (435)
T ss_pred CEEEECCCHHHHHHHHHHHhC-CCeEEEEeCCCCCCce
Confidence 799999999999999999998 9999999998887543
No 206
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=97.63 E-value=5.2e-05 Score=81.95 Aligned_cols=36 Identities=33% Similarity=0.287 Sum_probs=32.6
Q ss_pred cEEEECCChhHHHHHHHHHhcCC--CeEEEEecCCCCCC
Q psy1042 119 DFIIIGAGSAGCVLANRLSEIKK--WKVLLLEAGIEEPF 155 (567)
Q Consensus 119 DvIVVGsG~aG~~aA~~Lae~~G--~~VlVLE~G~~~~~ 155 (567)
+|||||||++|++||++|+++ | ++|+|||+.+..++
T Consensus 2 ~v~IVGaGiaGL~aA~~L~~~-G~~~~V~vlEa~~~~GG 39 (451)
T PRK11883 2 KVAIIGGGITGLSAAYRLHKK-GPDADITLLEASDRLGG 39 (451)
T ss_pred eEEEECCCHHHHHHHHHHHHh-CCCCCEEEEEcCCCCcc
Confidence 599999999999999999998 7 89999999877653
No 207
>PRK07233 hypothetical protein; Provisional
Probab=97.61 E-value=6e-05 Score=80.92 Aligned_cols=36 Identities=31% Similarity=0.328 Sum_probs=33.3
Q ss_pred cEEEECCChhHHHHHHHHHhcCCCeEEEEecCCCCCC
Q psy1042 119 DFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIEEPF 155 (567)
Q Consensus 119 DvIVVGsG~aG~~aA~~Lae~~G~~VlVLE~G~~~~~ 155 (567)
+|||||||++|++||+.|+++ |++|+|||+....++
T Consensus 1 ~vvVIGaGiaGL~aA~~L~~~-G~~v~vlE~~~~~GG 36 (434)
T PRK07233 1 KIAIVGGGIAGLAAAYRLAKR-GHEVTVFEADDQLGG 36 (434)
T ss_pred CEEEECCCHHHHHHHHHHHHC-CCcEEEEEeCCCCCC
Confidence 589999999999999999999 999999999987754
No 208
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=97.60 E-value=0.00017 Score=74.93 Aligned_cols=36 Identities=36% Similarity=0.397 Sum_probs=27.2
Q ss_pred cccEEEECCChhHHHHHHHHHhcCCCeEEEEecCCC
Q psy1042 117 TFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIE 152 (567)
Q Consensus 117 ~yDvIVVGsG~aG~~aA~~Lae~~G~~VlVLE~G~~ 152 (567)
.||+|+||.|++++++|..|.+.+..+++.||+-+.
T Consensus 2 ~~D~igIG~GP~nLslA~~l~~~~~~~~~f~e~~~~ 37 (341)
T PF13434_consen 2 IYDLIGIGFGPFNLSLAALLEEHGDLKALFLERRPS 37 (341)
T ss_dssp EESEEEE--SHHHHHHHHHHHHHH---EEEEES-SS
T ss_pred ceeEEEEeeCHHHHHHHHHhhhcCCCCEEEEecCCC
Confidence 589999999999999999999984699999998654
No 209
>PRK08163 salicylate hydroxylase; Provisional
Probab=97.59 E-value=6.4e-05 Score=79.84 Aligned_cols=36 Identities=33% Similarity=0.379 Sum_probs=32.8
Q ss_pred CcccEEEECCChhHHHHHHHHHhcCCCeEEEEecCCC
Q psy1042 116 MTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIE 152 (567)
Q Consensus 116 ~~yDvIVVGsG~aG~~aA~~Lae~~G~~VlVLE~G~~ 152 (567)
...||||||||++|+++|..|++. |++|+|+||.+.
T Consensus 3 ~~~~V~IvGaGiaGl~~A~~L~~~-g~~v~v~Er~~~ 38 (396)
T PRK08163 3 KVTPVLIVGGGIGGLAAALALARQ-GIKVKLLEQAAE 38 (396)
T ss_pred CCCeEEEECCcHHHHHHHHHHHhC-CCcEEEEeeCcc
Confidence 357999999999999999999998 999999998643
No 210
>PLN02546 glutathione reductase
Probab=97.58 E-value=5.9e-05 Score=83.43 Aligned_cols=33 Identities=30% Similarity=0.382 Sum_probs=31.5
Q ss_pred CcccEEEECCChhHHHHHHHHHhcCCCeEEEEec
Q psy1042 116 MTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEA 149 (567)
Q Consensus 116 ~~yDvIVVGsG~aG~~aA~~Lae~~G~~VlVLE~ 149 (567)
.+|||||||+|++|..+|.+||+. |++|+|+|+
T Consensus 78 ~~yDvvVIG~GpaG~~aA~~aa~~-G~~V~liE~ 110 (558)
T PLN02546 78 YDFDLFTIGAGSGGVRASRFASNF-GASAAVCEL 110 (558)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHC-CCeEEEEec
Confidence 469999999999999999999999 999999996
No 211
>PLN02507 glutathione reductase
Probab=97.58 E-value=6.2e-05 Score=82.50 Aligned_cols=33 Identities=36% Similarity=0.454 Sum_probs=31.6
Q ss_pred CcccEEEECCChhHHHHHHHHHhcCCCeEEEEec
Q psy1042 116 MTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEA 149 (567)
Q Consensus 116 ~~yDvIVVGsG~aG~~aA~~Lae~~G~~VlVLE~ 149 (567)
..||+||||||++|..+|.+|++. |++|+|||+
T Consensus 24 ~~yDvvVIG~GpaG~~aA~~a~~~-G~~V~liE~ 56 (499)
T PLN02507 24 YDFDLFVIGAGSGGVRAARFSANF-GAKVGICEL 56 (499)
T ss_pred cccCEEEECCCHHHHHHHHHHHHC-CCeEEEEec
Confidence 469999999999999999999999 999999996
No 212
>PLN02576 protoporphyrinogen oxidase
Probab=97.56 E-value=8e-05 Score=81.69 Aligned_cols=40 Identities=28% Similarity=0.242 Sum_probs=35.0
Q ss_pred CcccEEEECCChhHHHHHHHHHhcCCCeEEEEecCCCCCC
Q psy1042 116 MTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIEEPF 155 (567)
Q Consensus 116 ~~yDvIVVGsG~aG~~aA~~Lae~~G~~VlVLE~G~~~~~ 155 (567)
..+||||||||++|+++|++|+++.|.+|+|||+....++
T Consensus 11 ~~~~v~IIGaGisGL~aA~~L~~~~g~~v~vlEa~~rvGG 50 (496)
T PLN02576 11 SSKDVAVVGAGVSGLAAAYALASKHGVNVLVTEARDRVGG 50 (496)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHhcCCCEEEEecCCCCCC
Confidence 4579999999999999999999853799999999887654
No 213
>PRK07236 hypothetical protein; Provisional
Probab=97.55 E-value=7.5e-05 Score=79.18 Aligned_cols=34 Identities=24% Similarity=0.303 Sum_probs=32.0
Q ss_pred cccEEEECCChhHHHHHHHHHhcCCCeEEEEecCC
Q psy1042 117 TFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGI 151 (567)
Q Consensus 117 ~yDvIVVGsG~aG~~aA~~Lae~~G~~VlVLE~G~ 151 (567)
..||||||||++|+++|..|++. |++|+|+||.+
T Consensus 6 ~~~ViIVGaG~aGl~~A~~L~~~-G~~v~v~E~~~ 39 (386)
T PRK07236 6 GPRAVVIGGSLGGLFAALLLRRA-GWDVDVFERSP 39 (386)
T ss_pred CCeEEEECCCHHHHHHHHHHHhC-CCCEEEEecCC
Confidence 47999999999999999999998 99999999864
No 214
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=97.54 E-value=7.7e-05 Score=78.56 Aligned_cols=33 Identities=39% Similarity=0.687 Sum_probs=30.7
Q ss_pred cEEEECCChhHHHHHHHHHhc-CCCeEEEEecCC
Q psy1042 119 DFIIIGAGSAGCVLANRLSEI-KKWKVLLLEAGI 151 (567)
Q Consensus 119 DvIVVGsG~aG~~aA~~Lae~-~G~~VlVLE~G~ 151 (567)
||||||||+||+++|.+|+++ +|++|+|||+++
T Consensus 1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~ 34 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGR 34 (370)
T ss_pred CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCC
Confidence 899999999999999999984 699999999875
No 215
>PRK06753 hypothetical protein; Provisional
Probab=97.53 E-value=7.9e-05 Score=78.46 Aligned_cols=33 Identities=33% Similarity=0.387 Sum_probs=31.2
Q ss_pred cEEEECCChhHHHHHHHHHhcCCCeEEEEecCCC
Q psy1042 119 DFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIE 152 (567)
Q Consensus 119 DvIVVGsG~aG~~aA~~Lae~~G~~VlVLE~G~~ 152 (567)
||||||||++|+++|..|++. |++|+|+||.+.
T Consensus 2 ~V~IvGgG~aGl~~A~~L~~~-g~~v~v~E~~~~ 34 (373)
T PRK06753 2 KIAIIGAGIGGLTAAALLQEQ-GHEVKVFEKNES 34 (373)
T ss_pred EEEEECCCHHHHHHHHHHHhC-CCcEEEEecCCc
Confidence 799999999999999999998 999999998754
No 216
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=97.52 E-value=8.1e-05 Score=83.63 Aligned_cols=34 Identities=29% Similarity=0.394 Sum_probs=32.2
Q ss_pred CcccEEEECCChhHHHHHHHHHhcCCCeEEEEecC
Q psy1042 116 MTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAG 150 (567)
Q Consensus 116 ~~yDvIVVGsG~aG~~aA~~Lae~~G~~VlVLE~G 150 (567)
.+||+||||+|++|..+|.++++. |++|+|||++
T Consensus 115 ~~yDviVIG~G~gG~~aA~~aa~~-G~kV~lie~~ 148 (659)
T PTZ00153 115 EEYDVGIIGCGVGGHAAAINAMER-GLKVIIFTGD 148 (659)
T ss_pred ccCCEEEECCCHHHHHHHHHHHHC-CCcEEEEeCC
Confidence 479999999999999999999999 9999999975
No 217
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=97.51 E-value=8.7e-05 Score=78.75 Aligned_cols=34 Identities=44% Similarity=0.565 Sum_probs=30.9
Q ss_pred cccEEEECCChhHHHHHHHHHhc--CCCeEEEEecC
Q psy1042 117 TFDFIIIGAGSAGCVLANRLSEI--KKWKVLLLEAG 150 (567)
Q Consensus 117 ~yDvIVVGsG~aG~~aA~~Lae~--~G~~VlVLE~G 150 (567)
.+||||||||++|+++|+.|++. .|.+|+||||.
T Consensus 3 ~~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~ 38 (395)
T PRK05732 3 RMDVIIVGGGMAGATLALALSRLSHGGLPVALIEAF 38 (395)
T ss_pred cCCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCC
Confidence 58999999999999999999874 39999999985
No 218
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=97.51 E-value=0.00015 Score=81.81 Aligned_cols=38 Identities=29% Similarity=0.348 Sum_probs=34.0
Q ss_pred CCCcccEEEECCChhHHHHHHHHHh-cCCCeEEEEecCCC
Q psy1042 114 DDMTFDFIIIGAGSAGCVLANRLSE-IKKWKVLLLEAGIE 152 (567)
Q Consensus 114 ~~~~yDvIVVGsG~aG~~aA~~Lae-~~G~~VlVLE~G~~ 152 (567)
+..++||||||||++|+++|..|++ . |.+|+|||+.+.
T Consensus 29 ~~~~~dVlIVGAGPaGL~lA~~Lar~~-Gi~v~IiE~~~~ 67 (634)
T PRK08294 29 LPDEVDVLIVGCGPAGLTLAAQLSAFP-DITTRIVERKPG 67 (634)
T ss_pred CCCCCCEEEECCCHHHHHHHHHHhcCC-CCcEEEEEcCCC
Confidence 3467999999999999999999999 6 999999998643
No 219
>PRK10262 thioredoxin reductase; Provisional
Probab=97.50 E-value=0.00011 Score=75.80 Aligned_cols=64 Identities=9% Similarity=0.112 Sum_probs=44.7
Q ss_pred hHHHHhcCCCeEEecceEEEEEEeCCCCCCCCccEEEEEEEEeC---CEEEEEEcCcEEEEcCCCCccHHHHHhCCC
Q psy1042 321 IRPIRKKRKNLTILTEAHVTRIICDKTPNKHKKLVAKSVEFFYK---KKLRRARAKKEVISSAGAINSPKILMLSGI 394 (567)
Q Consensus 321 L~~a~~~~~gv~I~~~t~V~~I~~d~~~~~~~~~rv~GV~~~~~---g~~~~v~A~k~VVLAAGa~~Tp~LLl~SGI 394 (567)
+...++ ..++++++++.|++|.-+ +. ++.+|++.+. +...++.++ .||+|+|.-....|+ .+++
T Consensus 191 ~~~~l~-~~gV~i~~~~~v~~v~~~--~~-----~~~~v~~~~~~~~~~~~~i~~D-~vv~a~G~~p~~~l~-~~~l 257 (321)
T PRK10262 191 LMDKVE-NGNIILHTNRTLEEVTGD--QM-----GVTGVRLRDTQNSDNIESLDVA-GLFVAIGHSPNTAIF-EGQL 257 (321)
T ss_pred HHhhcc-CCCeEEEeCCEEEEEEcC--Cc-----cEEEEEEEEcCCCCeEEEEECC-EEEEEeCCccChhHh-hccc
Confidence 333444 579999999999999754 33 5778887642 445679997 799999966555544 3444
No 220
>PRK06996 hypothetical protein; Provisional
Probab=97.48 E-value=0.0001 Score=78.54 Aligned_cols=36 Identities=33% Similarity=0.515 Sum_probs=32.0
Q ss_pred CCcccEEEECCChhHHHHHHHHHhcCC----CeEEEEecCC
Q psy1042 115 DMTFDFIIIGAGSAGCVLANRLSEIKK----WKVLLLEAGI 151 (567)
Q Consensus 115 ~~~yDvIVVGsG~aG~~aA~~Lae~~G----~~VlVLE~G~ 151 (567)
+.+|||+|||||++|+++|..|++. | ++|+|||+.+
T Consensus 9 ~~~~dv~IvGgGpaG~~~A~~L~~~-g~~~g~~v~l~e~~~ 48 (398)
T PRK06996 9 APDFDIAIVGAGPVGLALAGWLARR-SATRALSIALIDARE 48 (398)
T ss_pred CCCCCEEEECcCHHHHHHHHHHhcC-CCcCCceEEEecCCC
Confidence 3568999999999999999999997 6 5799999864
No 221
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=97.47 E-value=0.00013 Score=69.48 Aligned_cols=32 Identities=41% Similarity=0.527 Sum_probs=29.6
Q ss_pred cEEEECCChhHHHHHHHHHhcCCCeEEEEecCC
Q psy1042 119 DFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGI 151 (567)
Q Consensus 119 DvIVVGsG~aG~~aA~~Lae~~G~~VlVLE~G~ 151 (567)
||||||||+||+.+|.+|++. |.+|+|+|+.+
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~-~~~v~ii~~~~ 32 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARP-GAKVLIIEKSP 32 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHT-TSEEEEESSSS
T ss_pred CEEEEecHHHHHHHHHHHhcC-CCeEEEEeccc
Confidence 799999999999999999987 99999998653
No 222
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=97.46 E-value=0.00012 Score=79.95 Aligned_cols=35 Identities=29% Similarity=0.497 Sum_probs=31.6
Q ss_pred CcccEEEECCChhHHHHHHHHHhcCCCeEEEEecC
Q psy1042 116 MTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAG 150 (567)
Q Consensus 116 ~~yDvIVVGsG~aG~~aA~~Lae~~G~~VlVLE~G 150 (567)
.+||+||||||++|.++|.++|+..|.+|+|||++
T Consensus 2 ~~~DviVIG~G~~G~~aA~~aa~~~g~~V~lie~~ 36 (486)
T TIGR01423 2 KAFDLVVIGAGSGGLEAGWNAATLYKKRVAVIDVQ 36 (486)
T ss_pred CccCEEEECCChHHHHHHHHHHHhcCCEEEEEecc
Confidence 46999999999999999999999328999999974
No 223
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=97.44 E-value=0.00012 Score=77.78 Aligned_cols=35 Identities=34% Similarity=0.357 Sum_probs=32.9
Q ss_pred cEEEECCChhHHHHHHHHHhcCCCeEEEEecCCCCC
Q psy1042 119 DFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIEEP 154 (567)
Q Consensus 119 DvIVVGsG~aG~~aA~~Lae~~G~~VlVLE~G~~~~ 154 (567)
-|+|+|+|.||++||++||++ |++|.|+|+++..+
T Consensus 2 rVai~GaG~AgL~~a~~La~~-g~~vt~~ea~~~~G 36 (485)
T COG3349 2 RVAIAGAGLAGLAAAYELADA-GYDVTLYEARDRLG 36 (485)
T ss_pred eEEEEcccHHHHHHHHHHHhC-CCceEEEeccCccC
Confidence 389999999999999999999 99999999998874
No 224
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=97.44 E-value=0.00016 Score=75.71 Aligned_cols=39 Identities=38% Similarity=0.428 Sum_probs=35.5
Q ss_pred CCcccEEEECCChhHHHHHHHHHhcCCCeEEEEecCCCCC
Q psy1042 115 DMTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIEEP 154 (567)
Q Consensus 115 ~~~yDvIVVGsG~aG~~aA~~Lae~~G~~VlVLE~G~~~~ 154 (567)
....||||||+|.+||++|++|.++ |++|+|||+-+...
T Consensus 5 ~~~~~viivGaGlaGL~AA~eL~ka-G~~v~ilEar~r~G 43 (450)
T COG1231 5 PKTADVIIVGAGLAGLSAAYELKKA-GYQVQILEARDRVG 43 (450)
T ss_pred CCCCcEEEECCchHHHHHHHHHhhc-CcEEEEEeccCCcC
Confidence 3568999999999999999999999 99999999877664
No 225
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=97.44 E-value=0.00014 Score=79.03 Aligned_cols=38 Identities=26% Similarity=0.222 Sum_probs=33.9
Q ss_pred ccEEEECCChhHHHHHHHHHhc-C--CCeEEEEecCCCCCC
Q psy1042 118 FDFIIIGAGSAGCVLANRLSEI-K--KWKVLLLEAGIEEPF 155 (567)
Q Consensus 118 yDvIVVGsG~aG~~aA~~Lae~-~--G~~VlVLE~G~~~~~ 155 (567)
.||||||||++|+++|++|+++ + |++|+|+|+.+..++
T Consensus 3 ~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~r~GG 43 (462)
T TIGR00562 3 KHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASDRVGG 43 (462)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCCcCcc
Confidence 5899999999999999999986 3 899999999887643
No 226
>PRK14727 putative mercuric reductase; Provisional
Probab=97.42 E-value=0.00015 Score=79.19 Aligned_cols=37 Identities=27% Similarity=0.321 Sum_probs=33.8
Q ss_pred CcccEEEECCChhHHHHHHHHHhcCCCeEEEEecCCCC
Q psy1042 116 MTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIEE 153 (567)
Q Consensus 116 ~~yDvIVVGsG~aG~~aA~~Lae~~G~~VlVLE~G~~~ 153 (567)
..||+||||+|++|+++|.+|++. |.+|+|+|++...
T Consensus 15 ~~~dvvvIG~G~aG~~~a~~~~~~-g~~v~~ie~~~~~ 51 (479)
T PRK14727 15 LQLHVAIIGSGSAAFAAAIKAAEH-GARVTIIEGADVI 51 (479)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhC-CCeEEEEEccCcc
Confidence 459999999999999999999998 9999999997544
No 227
>PLN02568 polyamine oxidase
Probab=97.39 E-value=0.0002 Score=79.04 Aligned_cols=39 Identities=31% Similarity=0.370 Sum_probs=34.5
Q ss_pred CcccEEEECCChhHHHHHHHHHhcCC-----CeEEEEecCCCCCC
Q psy1042 116 MTFDFIIIGAGSAGCVLANRLSEIKK-----WKVLLLEAGIEEPF 155 (567)
Q Consensus 116 ~~yDvIVVGsG~aG~~aA~~Lae~~G-----~~VlVLE~G~~~~~ 155 (567)
...||||||+|++|+++|.+|++. | ++|+|||+....++
T Consensus 4 ~~~~v~iiGaG~aGl~aa~~L~~~-g~~~~~~~v~v~E~~~~~GG 47 (539)
T PLN02568 4 KKPRIVIIGAGMAGLTAANKLYTS-SAANDMFELTVVEGGDRIGG 47 (539)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhc-ccccCCceEEEEeCCCCcCC
Confidence 347999999999999999999987 6 89999999887654
No 228
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=97.39 E-value=0.00016 Score=76.32 Aligned_cols=35 Identities=31% Similarity=0.221 Sum_probs=32.1
Q ss_pred ccEEEECCChhHHHHHHHHHhcCCCeEEEEecCCCC
Q psy1042 118 FDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIEE 153 (567)
Q Consensus 118 yDvIVVGsG~aG~~aA~~Lae~~G~~VlVLE~G~~~ 153 (567)
-||+|||||.+||.+|+.||+. |++|+|+|+.+..
T Consensus 3 ~dVvVIGGGlAGleAAlaLAr~-Gl~V~LiE~rp~~ 37 (436)
T PRK05335 3 KPVNVIGAGLAGSEAAWQLAKR-GVPVELYEMRPVK 37 (436)
T ss_pred CcEEEECCCHHHHHHHHHHHhC-CCcEEEEEccCcc
Confidence 4899999999999999999998 9999999987653
No 229
>PLN02676 polyamine oxidase
Probab=97.38 E-value=0.00019 Score=78.40 Aligned_cols=39 Identities=36% Similarity=0.353 Sum_probs=35.0
Q ss_pred CcccEEEECCChhHHHHHHHHHhcCCC-eEEEEecCCCCCC
Q psy1042 116 MTFDFIIIGAGSAGCVLANRLSEIKKW-KVLLLEAGIEEPF 155 (567)
Q Consensus 116 ~~yDvIVVGsG~aG~~aA~~Lae~~G~-~VlVLE~G~~~~~ 155 (567)
..+||||||+|++|+++|++|++. |. +|+|||+....++
T Consensus 25 ~~~~v~IIGaG~sGL~aa~~L~~~-g~~~v~vlE~~~~~GG 64 (487)
T PLN02676 25 PSPSVIIVGAGMSGISAAKTLSEA-GIEDILILEATDRIGG 64 (487)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHc-CCCcEEEecCCCCCCC
Confidence 468999999999999999999998 98 6999999887644
No 230
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=97.37 E-value=0.00016 Score=79.01 Aligned_cols=33 Identities=36% Similarity=0.592 Sum_probs=31.4
Q ss_pred cccEEEECCChhHHHHHHHHHhcCCCeEEEEecC
Q psy1042 117 TFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAG 150 (567)
Q Consensus 117 ~yDvIVVGsG~aG~~aA~~Lae~~G~~VlVLE~G 150 (567)
.||+||||+|++|..+|.+|++. |.+|+|||+.
T Consensus 2 ~yDvvVIG~G~aG~~aA~~aa~~-G~~v~lie~~ 34 (484)
T TIGR01438 2 DYDLIVIGGGSGGLAAAKEAADY-GAKVMLLDFV 34 (484)
T ss_pred ccCEEEECCCHHHHHHHHHHHHC-CCeEEEEecc
Confidence 59999999999999999999998 9999999974
No 231
>PRK05868 hypothetical protein; Validated
Probab=97.35 E-value=0.00019 Score=75.75 Aligned_cols=33 Identities=24% Similarity=0.308 Sum_probs=31.0
Q ss_pred cEEEECCChhHHHHHHHHHhcCCCeEEEEecCCC
Q psy1042 119 DFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIE 152 (567)
Q Consensus 119 DvIVVGsG~aG~~aA~~Lae~~G~~VlVLE~G~~ 152 (567)
||+|||||++|+++|..|++. |++|+|+|+.+.
T Consensus 3 ~V~IvGgG~aGl~~A~~L~~~-G~~v~viE~~~~ 35 (372)
T PRK05868 3 TVVVSGASVAGTAAAYWLGRH-GYSVTMVERHPG 35 (372)
T ss_pred eEEEECCCHHHHHHHHHHHhC-CCCEEEEcCCCC
Confidence 899999999999999999998 999999998644
No 232
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=97.34 E-value=0.0038 Score=67.46 Aligned_cols=62 Identities=16% Similarity=0.197 Sum_probs=44.6
Q ss_pred hhHHHHhcCCCeEEecceEEEEEEeCCCCCCCCccEEEEEEEEeCCEEEEEEcCcEEEEcCCCCccHHHHHhCCCC
Q psy1042 320 FIRPIRKKRKNLTILTEAHVTRIICDKTPNKHKKLVAKSVEFFYKKKLRRARAKKEVISSAGAINSPKILMLSGIG 395 (567)
Q Consensus 320 ~L~~a~~~~~gv~I~~~t~V~~I~~d~~~~~~~~~rv~GV~~~~~g~~~~v~A~k~VVLAAGa~~Tp~LLl~SGIG 395 (567)
++...++ +.|++|+++++|++|..+ + ++.+|... ++ ++.++ .||+|+|......+|..+|+.
T Consensus 196 ~l~~~l~-~~gI~v~~~~~v~~i~~~---~-----~~~~v~~~-~~---~i~~d-~vi~a~G~~p~~~~l~~~gl~ 257 (444)
T PRK09564 196 VMEEELR-ENGVELHLNEFVKSLIGE---D-----KVEGVVTD-KG---EYEAD-VVIVATGVKPNTEFLEDTGLK 257 (444)
T ss_pred HHHHHHH-HCCCEEEcCCEEEEEecC---C-----cEEEEEeC-CC---EEEcC-EEEECcCCCcCHHHHHhcCcc
Confidence 4555555 689999999999999532 2 45555432 22 58896 799999987777888888874
No 233
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=97.33 E-value=0.00025 Score=79.36 Aligned_cols=37 Identities=22% Similarity=0.378 Sum_probs=33.8
Q ss_pred CCCcccEEEECCChhHHHHHHHHHhcCCCeEEEEecCC
Q psy1042 114 DDMTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGI 151 (567)
Q Consensus 114 ~~~~yDvIVVGsG~aG~~aA~~Lae~~G~~VlVLE~G~ 151 (567)
.....+|+|||||++|+++|..|++. |++|+|+||.+
T Consensus 78 ~~~~~~VlIVGgGIaGLalAlaL~r~-Gi~V~V~Er~~ 114 (668)
T PLN02927 78 KKKKSRVLVAGGGIGGLVFALAAKKK-GFDVLVFEKDL 114 (668)
T ss_pred ccCCCCEEEECCCHHHHHHHHHHHhc-CCeEEEEeccc
Confidence 35668999999999999999999999 99999999864
No 234
>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [].
Probab=97.33 E-value=0.0089 Score=63.76 Aligned_cols=67 Identities=21% Similarity=0.162 Sum_probs=46.8
Q ss_pred HHhcCCCeEEecceEEEEEEeCCCCCCCCccEEEEEEEEeCCEEEE--EEcCcEEEEcCCCCccHHHHHhCCCCCcch
Q psy1042 324 IRKKRKNLTILTEAHVTRIICDKTPNKHKKLVAKSVEFFYKKKLRR--ARAKKEVISSAGAINSPKILMLSGIGPKDH 399 (567)
Q Consensus 324 a~~~~~gv~I~~~t~V~~I~~d~~~~~~~~~rv~GV~~~~~g~~~~--v~A~k~VVLAAGa~~Tp~LLl~SGIG~~~~ 399 (567)
.++ ..||++..+|+|+.|.++.+++ ..+|+++.+..+|...+ +..+.-|++.-|++- ..|..|..+.
T Consensus 216 ~L~-~~GV~F~~~t~V~di~~~~~~~---~~~~~~i~~~~~g~~~~i~l~~~DlV~vT~GS~t-----~~s~~G~~~~ 284 (500)
T PF06100_consen 216 YLK-SQGVDFRFNTKVTDIDFDITGD---KKTATRIHIEQDGKEETIDLGPDDLVFVTNGSMT-----EGSTYGDNDT 284 (500)
T ss_pred HHH-HCCCEEECCCEEEEEEEEccCC---CeeEEEEEEEcCCCeeEEEeCCCCEEEEECCccc-----cccccCCCCC
Confidence 344 6899999999999999975332 23688888887765554 445557778778653 4566666554
No 235
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=97.29 E-value=0.00024 Score=77.30 Aligned_cols=37 Identities=19% Similarity=0.223 Sum_probs=32.2
Q ss_pred cEEEECCChhHHHHHHHHHhc-----CCCeEEEEecCCCCCC
Q psy1042 119 DFIIIGAGSAGCVLANRLSEI-----KKWKVLLLEAGIEEPF 155 (567)
Q Consensus 119 DvIVVGsG~aG~~aA~~Lae~-----~G~~VlVLE~G~~~~~ 155 (567)
+|||||||++|++||++|+++ .|.+|+|||+.+..++
T Consensus 3 ~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~r~GG 44 (463)
T PRK12416 3 TVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYLGG 44 (463)
T ss_pred eEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecCCCccc
Confidence 699999999999999999985 1479999999887754
No 236
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=97.28 E-value=0.00023 Score=78.42 Aligned_cols=57 Identities=18% Similarity=0.206 Sum_probs=45.2
Q ss_pred CCCeEEecceEEEEEEeCCCCCCCCccEEEEEEEEe--CCEEEEEEcCcEEEEcCCCCccHHHHHhC
Q psy1042 328 RKNLTILTEAHVTRIICDKTPNKHKKLVAKSVEFFY--KKKLRRARAKKEVISSAGAINSPKILMLS 392 (567)
Q Consensus 328 ~~gv~I~~~t~V~~I~~d~~~~~~~~~rv~GV~~~~--~g~~~~v~A~k~VVLAAGa~~Tp~LLl~S 392 (567)
..|++|++++.|++|.-+ ++ ++++|++.+ +++..++.++ .|++|.|....+.+|..+
T Consensus 399 ~~gI~i~~~~~v~~i~~~--~g-----~v~~v~~~~~~~g~~~~i~~D-~v~~~~G~~p~~~~l~~~ 457 (517)
T PRK15317 399 LPNVTIITNAQTTEVTGD--GD-----KVTGLTYKDRTTGEEHHLELE-GVFVQIGLVPNTEWLKGT 457 (517)
T ss_pred CCCcEEEECcEEEEEEcC--CC-----cEEEEEEEECCCCcEEEEEcC-EEEEeECCccCchHHhhh
Confidence 469999999999999754 34 788888874 4666689997 799999987777776544
No 237
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=97.27 E-value=0.00028 Score=76.46 Aligned_cols=36 Identities=31% Similarity=0.222 Sum_probs=32.8
Q ss_pred cEEEECCChhHHHHHHHHHhcCCCeEEEEecCCCCCC
Q psy1042 119 DFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIEEPF 155 (567)
Q Consensus 119 DvIVVGsG~aG~~aA~~Lae~~G~~VlVLE~G~~~~~ 155 (567)
+|||||+|++|+++|++|+++ |++|+|||+.+..++
T Consensus 1 ~v~IiGaG~aGl~aA~~L~~~-G~~v~vlE~~~~~GG 36 (453)
T TIGR02731 1 RVAIAGAGLAGLSCAKYLADA-GHTPIVLEARDVLGG 36 (453)
T ss_pred CEEEECCCHHHHHHHHHHHHC-CCcEEEEecCCCCCC
Confidence 489999999999999999999 999999999877643
No 238
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=97.26 E-value=0.00027 Score=70.52 Aligned_cols=58 Identities=10% Similarity=0.061 Sum_probs=45.1
Q ss_pred hHHHHhcCCCeEEecceEEEEEEeCCCCCCCCccEEEEEEEEeCCEEEEEEcCcEEEEcCCCCccHHH
Q psy1042 321 IRPIRKKRKNLTILTEAHVTRIICDKTPNKHKKLVAKSVEFFYKKKLRRARAKKEVISSAGAINSPKI 388 (567)
Q Consensus 321 L~~a~~~~~gv~I~~~t~V~~I~~d~~~~~~~~~rv~GV~~~~~g~~~~v~A~k~VVLAAGa~~Tp~L 388 (567)
|..... +.|..++++-+|.+..+. ++ +|+.|.++ +.....++|+ .+|||+|+|-|--|
T Consensus 264 L~~~f~-~~Gg~~m~Gd~V~~a~~~--~~-----~v~~i~tr-n~~diP~~a~-~~VLAsGsffskGL 321 (421)
T COG3075 264 LQRQFE-QLGGLWMPGDEVKKATCK--GG-----RVTEIYTR-NHADIPLRAD-FYVLASGSFFSKGL 321 (421)
T ss_pred HHHHHH-HcCceEecCCceeeeeee--CC-----eEEEEEec-ccccCCCChh-Heeeeccccccccc
Confidence 444445 688999999999999887 55 89998876 4455678996 79999999876544
No 239
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.26 E-value=0.0046 Score=62.29 Aligned_cols=66 Identities=18% Similarity=0.209 Sum_probs=51.0
Q ss_pred HhhHHHHhcCCCeEEecceEEEEEEeCCCCCCCCccEEEEEEEEe--CCEEEEEEcCcEEEEcCCCCccHHHHHhC
Q psy1042 319 AFIRPIRKKRKNLTILTEAHVTRIICDKTPNKHKKLVAKSVEFFY--KKKLRRARAKKEVISSAGAINSPKILMLS 392 (567)
Q Consensus 319 ~~L~~a~~~~~gv~I~~~t~V~~I~~d~~~~~~~~~rv~GV~~~~--~g~~~~v~A~k~VVLAAGa~~Tp~LLl~S 392 (567)
..|.+.+.+-+|++|++|+.-++|.-| +. +|+|++|.+ .|..+.+.-. .|.+--|-+-++.+|.-+
T Consensus 393 ~VLq~kl~sl~Nv~ii~na~Ttei~Gd--g~-----kV~Gl~Y~dr~sge~~~l~Le-GvFVqIGL~PNT~WLkg~ 460 (520)
T COG3634 393 AVLQDKLRSLPNVTIITNAQTTEVKGD--GD-----KVTGLEYRDRVSGEEHHLELE-GVFVQIGLLPNTEWLKGA 460 (520)
T ss_pred HHHHHHHhcCCCcEEEecceeeEEecC--Cc-----eecceEEEeccCCceeEEEee-eeEEEEecccChhHhhch
Confidence 345443332689999999999999866 55 899999985 4777777774 799999988888888744
No 240
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=97.25 E-value=0.00027 Score=77.92 Aligned_cols=56 Identities=20% Similarity=0.243 Sum_probs=43.4
Q ss_pred CCCeEEecceEEEEEEeCCCCCCCCccEEEEEEEEe--CCEEEEEEcCcEEEEcCCCCccHHHHHh
Q psy1042 328 RKNLTILTEAHVTRIICDKTPNKHKKLVAKSVEFFY--KKKLRRARAKKEVISSAGAINSPKILML 391 (567)
Q Consensus 328 ~~gv~I~~~t~V~~I~~d~~~~~~~~~rv~GV~~~~--~g~~~~v~A~k~VVLAAGa~~Tp~LLl~ 391 (567)
+.|++|++++.|++|.-+ ++ ++++|++.+ +++..++.++ .||+|.|....+.+|..
T Consensus 400 ~~gV~i~~~~~v~~i~~~--~~-----~v~~v~~~~~~~~~~~~i~~D-~vi~a~G~~Pn~~~l~~ 457 (515)
T TIGR03140 400 LPNVDILTSAQTTEIVGD--GD-----KVTGIRYQDRNSGEEKQLDLD-GVFVQIGLVPNTEWLKD 457 (515)
T ss_pred CCCCEEEECCeeEEEEcC--CC-----EEEEEEEEECCCCcEEEEEcC-EEEEEeCCcCCchHHhh
Confidence 369999999999999754 34 788888865 3555679997 79999998777777643
No 241
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=97.24 E-value=0.009 Score=62.91 Aligned_cols=35 Identities=23% Similarity=0.342 Sum_probs=31.1
Q ss_pred cEEEECCChhHHHHHHHHHhcC-CCeEEEEecCCCC
Q psy1042 119 DFIIIGAGSAGCVLANRLSEIK-KWKVLLLEAGIEE 153 (567)
Q Consensus 119 DvIVVGsG~aG~~aA~~Lae~~-G~~VlVLE~G~~~ 153 (567)
-+||||||.+|+.+|.+|+.++ +.+|+|||+-...
T Consensus 5 ~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~h 40 (405)
T COG1252 5 RIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDYH 40 (405)
T ss_pred eEEEECCcHHHHHHHHHhhhcCCCCcEEEEeCCCcc
Confidence 4999999999999999999973 5899999998764
No 242
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=97.21 E-value=0.00037 Score=81.20 Aligned_cols=38 Identities=24% Similarity=0.263 Sum_probs=34.2
Q ss_pred CcccEEEECCChhHHHHHHHHHhcCCCeEEEEecCCCCC
Q psy1042 116 MTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIEEP 154 (567)
Q Consensus 116 ~~yDvIVVGsG~aG~~aA~~Lae~~G~~VlVLE~G~~~~ 154 (567)
..++|+|||||+||++||+.|++. |++|+|+|+.+..+
T Consensus 536 ~~kkVaIIGGGPAGLSAA~~LAr~-G~~VTV~Ek~~~lG 573 (1012)
T TIGR03315 536 SAHKVAVIGAGPAGLSAGYFLARA-GHPVTVFEKKEKPG 573 (1012)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHC-CCeEEEEecccccC
Confidence 357999999999999999999998 99999999986543
No 243
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=97.17 E-value=0.003 Score=68.19 Aligned_cols=34 Identities=21% Similarity=0.502 Sum_probs=29.9
Q ss_pred cEEEECCChhHHHHHHHHHhc-CCCeEEEEecCCC
Q psy1042 119 DFIIIGAGSAGCVLANRLSEI-KKWKVLLLEAGIE 152 (567)
Q Consensus 119 DvIVVGsG~aG~~aA~~Lae~-~G~~VlVLE~G~~ 152 (567)
.|||||||+||+.+|.+|.+. ++.+|+|+|+.+.
T Consensus 3 ~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~~~ 37 (438)
T PRK13512 3 KIIVVGAVAGGATCASQIRRLDKESDIIIFEKDRD 37 (438)
T ss_pred eEEEECCcHHHHHHHHHHHhhCCCCCEEEEECCCC
Confidence 599999999999999999874 5789999998743
No 244
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=97.14 E-value=0.00042 Score=73.57 Aligned_cols=33 Identities=33% Similarity=0.375 Sum_probs=31.1
Q ss_pred cEEEECCChhHHHHHHHHHhcCCCeEEEEecCCC
Q psy1042 119 DFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIE 152 (567)
Q Consensus 119 DvIVVGsG~aG~~aA~~Lae~~G~~VlVLE~G~~ 152 (567)
||+|||||.+||.+|..||+. |.+|+|+|+.+.
T Consensus 2 ~VvVIGgGlAGleaA~~LAr~-G~~V~LiE~rp~ 34 (433)
T TIGR00137 2 PVHVIGGGLAGSEAAWQLAQA-GVPVILYEMRPE 34 (433)
T ss_pred CEEEECCCHHHHHHHHHHHhC-CCcEEEEecccc
Confidence 799999999999999999999 999999998654
No 245
>PRK12831 putative oxidoreductase; Provisional
Probab=97.11 E-value=0.00058 Score=74.21 Aligned_cols=37 Identities=30% Similarity=0.416 Sum_probs=33.6
Q ss_pred CcccEEEECCChhHHHHHHHHHhcCCCeEEEEecCCCC
Q psy1042 116 MTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIEE 153 (567)
Q Consensus 116 ~~yDvIVVGsG~aG~~aA~~Lae~~G~~VlVLE~G~~~ 153 (567)
...||+|||||++|+++|.+|++. |++|+|+|+....
T Consensus 139 ~~~~V~IIG~GpAGl~aA~~l~~~-G~~V~v~e~~~~~ 175 (464)
T PRK12831 139 KGKKVAVIGSGPAGLTCAGDLAKM-GYDVTIFEALHEP 175 (464)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhC-CCeEEEEecCCCC
Confidence 457999999999999999999998 9999999987654
No 246
>KOG4716|consensus
Probab=97.10 E-value=0.00045 Score=69.11 Aligned_cols=34 Identities=32% Similarity=0.549 Sum_probs=31.9
Q ss_pred CCcccEEEECCChhHHHHHHHHHhcCCCeEEEEec
Q psy1042 115 DMTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEA 149 (567)
Q Consensus 115 ~~~yDvIVVGsG~aG~~aA~~Lae~~G~~VlVLE~ 149 (567)
+.+||.||||+|.+|++||.++|.. |.+|++|+.
T Consensus 17 sydyDLIviGgGSgGLacaKeAa~~-G~kV~~lDf 50 (503)
T KOG4716|consen 17 SYDYDLIVIGGGSGGLACAKEAADL-GAKVACLDF 50 (503)
T ss_pred cCCccEEEEcCCcchhhHHHHHHhc-CCcEEEEee
Confidence 4679999999999999999999999 999999994
No 247
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=97.09 E-value=0.00057 Score=71.55 Aligned_cols=39 Identities=28% Similarity=0.388 Sum_probs=35.0
Q ss_pred CcccEEEECCChhHHHHHHHHHhcCCCeEEEEecCCCCCC
Q psy1042 116 MTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIEEPF 155 (567)
Q Consensus 116 ~~yDvIVVGsG~aG~~aA~~Lae~~G~~VlVLE~G~~~~~ 155 (567)
..-+++|||||.+|++||..||+. |++|.|+|+.+..++
T Consensus 123 v~~svLVIGGGvAGitAAl~La~~-G~~v~LVEKepsiGG 161 (622)
T COG1148 123 VSKSVLVIGGGVAGITAALELADM-GFKVYLVEKEPSIGG 161 (622)
T ss_pred hccceEEEcCcHHHHHHHHHHHHc-CCeEEEEecCCcccc
Confidence 345799999999999999999999 999999999887753
No 248
>KOG2614|consensus
Probab=97.09 E-value=0.00053 Score=70.82 Aligned_cols=32 Identities=28% Similarity=0.377 Sum_probs=30.2
Q ss_pred ccEEEECCChhHHHHHHHHHhcCCCeEEEEecC
Q psy1042 118 FDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAG 150 (567)
Q Consensus 118 yDvIVVGsG~aG~~aA~~Lae~~G~~VlVLE~G 150 (567)
-+|||||||++|+++|..|.++ |++|+|+|+-
T Consensus 3 ~~VvIvGgGI~Gla~A~~l~r~-G~~v~VlE~~ 34 (420)
T KOG2614|consen 3 PKVVIVGGGIVGLATALALHRK-GIDVVVLESR 34 (420)
T ss_pred CcEEEECCcHHHHHHHHHHHHc-CCeEEEEeec
Confidence 4799999999999999999999 9999999983
No 249
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=97.07 E-value=0.00057 Score=72.82 Aligned_cols=35 Identities=37% Similarity=0.338 Sum_probs=32.2
Q ss_pred EEEECCChhHHHHHHHHHhcCC--CeEEEEecCCCCCC
Q psy1042 120 FIIIGAGSAGCVLANRLSEIKK--WKVLLLEAGIEEPF 155 (567)
Q Consensus 120 vIVVGsG~aG~~aA~~Lae~~G--~~VlVLE~G~~~~~ 155 (567)
++|||||++|+++|++|.+. + ..|.|+|+++..++
T Consensus 3 i~IiG~GiaGLsaAy~L~k~-~p~~~i~lfE~~~r~GG 39 (444)
T COG1232 3 IAIIGGGIAGLSAAYRLQKA-GPDVEVTLFEADDRVGG 39 (444)
T ss_pred EEEECCcHHHHHHHHHHHHh-CCCCcEEEEecCCCCCc
Confidence 89999999999999999998 6 99999999977653
No 250
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=97.01 E-value=0.00064 Score=73.85 Aligned_cols=33 Identities=27% Similarity=0.379 Sum_probs=30.9
Q ss_pred cEEEECCChhHHHHHHHHHhcCCCeEEEEecCCC
Q psy1042 119 DFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIE 152 (567)
Q Consensus 119 DvIVVGsG~aG~~aA~~Lae~~G~~VlVLE~G~~ 152 (567)
++||||||++|+++|.+|++. |++|+|||++..
T Consensus 2 ~vvVIG~G~aG~~aA~~~~~~-g~~V~lie~~~~ 34 (458)
T PRK06912 2 KLVVIGGGPAGYVAAITAAQN-GKNVTLIDEADL 34 (458)
T ss_pred eEEEECCCHHHHHHHHHHHhC-CCcEEEEECCcc
Confidence 699999999999999999998 999999999754
No 251
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain. In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.
Probab=97.01 E-value=0.012 Score=62.29 Aligned_cols=55 Identities=15% Similarity=0.031 Sum_probs=37.4
Q ss_pred hHHHHhcCCCeEEecceEEEEEEeCCCCCCCCccEEEEEEEEeCCEEEEEEcCcEEEEcCCCCccHHHHH
Q psy1042 321 IRPIRKKRKNLTILTEAHVTRIICDKTPNKHKKLVAKSVEFFYKKKLRRARAKKEVISSAGAINSPKILM 390 (567)
Q Consensus 321 L~~a~~~~~gv~I~~~t~V~~I~~d~~~~~~~~~rv~GV~~~~~g~~~~v~A~k~VVLAAGa~~Tp~LLl 390 (567)
|..++. + |++|++++.|+.|..+ ++ + .+|++.++ . .++|+ .||+|+|++ ++.|+.
T Consensus 141 l~~~~~-~-G~~i~~~~~V~~i~~~--~~-----~-~~v~t~~g-~--~~~a~-~vV~a~G~~-~~~l~~ 195 (381)
T TIGR03197 141 LLAHAG-I-RLTLHFNTEITSLERD--GE-----G-WQLLDANG-E--VIAAS-VVVLANGAQ-AGQLAQ 195 (381)
T ss_pred HHhccC-C-CcEEEeCCEEEEEEEc--CC-----e-EEEEeCCC-C--EEEcC-EEEEcCCcc-cccccc
Confidence 444455 6 9999999999999875 33 3 34544333 2 47896 699999975 555543
No 252
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=96.99 E-value=0.0013 Score=52.88 Aligned_cols=32 Identities=34% Similarity=0.498 Sum_probs=30.3
Q ss_pred EEEECCChhHHHHHHHHHhcCCCeEEEEecCCC
Q psy1042 120 FIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIE 152 (567)
Q Consensus 120 vIVVGsG~aG~~aA~~Lae~~G~~VlVLE~G~~ 152 (567)
++|||||..|+-+|..|++. |.+|.|||+.+.
T Consensus 2 vvViGgG~ig~E~A~~l~~~-g~~vtli~~~~~ 33 (80)
T PF00070_consen 2 VVVIGGGFIGIELAEALAEL-GKEVTLIERSDR 33 (80)
T ss_dssp EEEESSSHHHHHHHHHHHHT-TSEEEEEESSSS
T ss_pred EEEECcCHHHHHHHHHHHHh-CcEEEEEeccch
Confidence 79999999999999999998 999999998865
No 253
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=96.98 E-value=0.00078 Score=73.43 Aligned_cols=65 Identities=9% Similarity=0.060 Sum_probs=45.1
Q ss_pred hHHHHhcCCCeEEecceEEEEEEeCCC-CCCCCccEEEEEEEEeCCEEEEEEcCcEEEEcCCCCccHHHHH
Q psy1042 321 IRPIRKKRKNLTILTEAHVTRIICDKT-PNKHKKLVAKSVEFFYKKKLRRARAKKEVISSAGAINSPKILM 390 (567)
Q Consensus 321 L~~a~~~~~gv~I~~~t~V~~I~~d~~-~~~~~~~rv~GV~~~~~g~~~~v~A~k~VVLAAGa~~Tp~LLl 390 (567)
|...++ +.|.+|+++++|++|..+.. ++ ..+|++|++.+++....+.|+ .||+|+....+.+||-
T Consensus 225 l~~~L~-~~Gg~i~~~~~V~~I~~~~~~~~---~~~v~~v~~~~g~~~~~~~aD-~VVlA~p~~~~~~Ll~ 290 (474)
T TIGR02732 225 ILEYIE-ARGGKFHLRHKVREIKYEKSSDG---STRVTGLIMSKPEGKKVIKAD-AYVAACDVPGIKRLLP 290 (474)
T ss_pred HHHHHH-HCCCEEECCCEEEEEEEecCCCC---ceeEEEEEEecCCcceEEECC-EEEECCChHHHHhhCC
Confidence 334455 58999999999999998631 11 003888888543222358896 6999999888777763
No 254
>PLN02529 lysine-specific histone demethylase 1
Probab=96.97 E-value=0.0011 Score=75.36 Aligned_cols=38 Identities=34% Similarity=0.425 Sum_probs=34.7
Q ss_pred CcccEEEECCChhHHHHHHHHHhcCCCeEEEEecCCCCC
Q psy1042 116 MTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIEEP 154 (567)
Q Consensus 116 ~~yDvIVVGsG~aG~~aA~~Lae~~G~~VlVLE~G~~~~ 154 (567)
...||||||+|++|++||..|++. |++|+|||+....+
T Consensus 159 ~~~~v~viGaG~aGl~aA~~l~~~-g~~v~v~E~~~~~G 196 (738)
T PLN02529 159 TEGSVIIVGAGLAGLAAARQLLSF-GFKVVVLEGRNRPG 196 (738)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHc-CCcEEEEecCccCc
Confidence 457999999999999999999999 99999999977654
No 255
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=96.97 E-value=0.00075 Score=72.23 Aligned_cols=33 Identities=39% Similarity=0.473 Sum_probs=29.9
Q ss_pred cEEEECCChhHHHHHHHHHhcCC-CeEEEEecCCC
Q psy1042 119 DFIIIGAGSAGCVLANRLSEIKK-WKVLLLEAGIE 152 (567)
Q Consensus 119 DvIVVGsG~aG~~aA~~Lae~~G-~~VlVLE~G~~ 152 (567)
.|+|||||++|+++|..|+++ | .+|+|+||.+.
T Consensus 2 ~V~IiGgGiaGla~A~~L~~~-g~~~v~v~Er~~~ 35 (414)
T TIGR03219 2 RVAIIGGGIAGVALALNLCKH-SHLNVQLFEAAPA 35 (414)
T ss_pred eEEEECCCHHHHHHHHHHHhc-CCCCEEEEecCCc
Confidence 589999999999999999998 7 69999998643
No 256
>PLN02612 phytoene desaturase
Probab=96.96 E-value=0.00093 Score=74.45 Aligned_cols=37 Identities=35% Similarity=0.373 Sum_probs=33.7
Q ss_pred cccEEEECCChhHHHHHHHHHhcCCCeEEEEecCCCCC
Q psy1042 117 TFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIEEP 154 (567)
Q Consensus 117 ~yDvIVVGsG~aG~~aA~~Lae~~G~~VlVLE~G~~~~ 154 (567)
..+|+|||+|.+|+++|++|+++ |++|+|+|+....+
T Consensus 93 ~~~v~iiG~G~~Gl~~a~~l~~~-g~~~~~~e~~~~~g 129 (567)
T PLN02612 93 PLKVVIAGAGLAGLSTAKYLADA-GHKPILLEARDVLG 129 (567)
T ss_pred CCCEEEECCCHHHHHHHHHHHhc-CCeEEEEecCCCCC
Confidence 47899999999999999999999 99999999976653
No 257
>KOG0405|consensus
Probab=96.93 E-value=0.0035 Score=63.17 Aligned_cols=35 Identities=37% Similarity=0.503 Sum_probs=32.8
Q ss_pred CCcccEEEECCChhHHHHHHHHHhcCCCeEEEEecC
Q psy1042 115 DMTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAG 150 (567)
Q Consensus 115 ~~~yDvIVVGsG~aG~~aA~~Lae~~G~~VlVLE~G 150 (567)
...||++|||+|.+|..+|+++|+. |.+|.|+|..
T Consensus 18 ~k~fDylvIGgGSGGvasARrAa~~-GAkv~l~E~~ 52 (478)
T KOG0405|consen 18 VKDFDYLVIGGGSGGVASARRAASH-GAKVALCELP 52 (478)
T ss_pred ccccceEEEcCCcchhHHhHHHHhc-CceEEEEecC
Confidence 3589999999999999999999999 9999999975
No 258
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=96.91 E-value=0.001 Score=72.57 Aligned_cols=37 Identities=24% Similarity=0.339 Sum_probs=33.9
Q ss_pred CcccEEEECCChhHHHHHHHHHhcCCCeEEEEecCCCC
Q psy1042 116 MTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIEE 153 (567)
Q Consensus 116 ~~yDvIVVGsG~aG~~aA~~Lae~~G~~VlVLE~G~~~ 153 (567)
..++|+|||+|++|+++|..|++. |++|+|+|+.+..
T Consensus 142 ~~~~VvIIGaGpAGl~aA~~l~~~-G~~V~vie~~~~~ 178 (471)
T PRK12810 142 TGKKVAVVGSGPAGLAAADQLARA-GHKVTVFERADRI 178 (471)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhC-CCcEEEEecCCCC
Confidence 457999999999999999999998 9999999998664
No 259
>PRK07846 mycothione reductase; Reviewed
Probab=96.91 E-value=0.00089 Score=72.54 Aligned_cols=33 Identities=33% Similarity=0.663 Sum_probs=28.4
Q ss_pred cccEEEECCChhHHHHHHHHHhcCCCeEEEEecCCC
Q psy1042 117 TFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIE 152 (567)
Q Consensus 117 ~yDvIVVGsG~aG~~aA~~Lae~~G~~VlVLE~G~~ 152 (567)
+||+||||+|++|..+|.++ . |.+|+|+|++..
T Consensus 1 ~yD~vVIG~G~~g~~aa~~~--~-G~~V~lie~~~~ 33 (451)
T PRK07846 1 HYDLIIIGTGSGNSILDERF--A-DKRIAIVEKGTF 33 (451)
T ss_pred CCCEEEECCCHHHHHHHHHH--C-CCeEEEEeCCCC
Confidence 38999999999999988763 5 999999998643
No 260
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=96.88 E-value=0.0011 Score=75.63 Aligned_cols=38 Identities=32% Similarity=0.498 Sum_probs=34.5
Q ss_pred CcccEEEECCChhHHHHHHHHHhcCCCeEEEEecCCCCC
Q psy1042 116 MTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIEEP 154 (567)
Q Consensus 116 ~~yDvIVVGsG~aG~~aA~~Lae~~G~~VlVLE~G~~~~ 154 (567)
...+|||||||++|+++|+.|++. |++|+|+|+....+
T Consensus 237 ~~~~v~IiGaG~aGl~aA~~L~~~-g~~v~v~E~~~r~G 274 (808)
T PLN02328 237 EPANVVVVGAGLAGLVAARQLLSM-GFKVVVLEGRARPG 274 (808)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHC-CCcEEEEeccccCC
Confidence 457999999999999999999998 99999999977654
No 261
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=96.85 E-value=0.0011 Score=71.89 Aligned_cols=33 Identities=30% Similarity=0.522 Sum_probs=27.9
Q ss_pred cccEEEECCChhHHHHHHHHHhcCCCeEEEEecCCC
Q psy1042 117 TFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIE 152 (567)
Q Consensus 117 ~yDvIVVGsG~aG~~aA~~Lae~~G~~VlVLE~G~~ 152 (567)
.||+||||+|++|..+|.+ .. |.+|+|+|++..
T Consensus 2 ~yD~vvIG~G~~g~~aa~~--~~-g~~V~lie~~~~ 34 (452)
T TIGR03452 2 HYDLIIIGTGSGNSIPDPR--FA-DKRIAIVEKGTF 34 (452)
T ss_pred CcCEEEECCCHHHHHHHHH--HC-CCeEEEEeCCCC
Confidence 4999999999999988654 35 999999998643
No 262
>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function. This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....
Probab=96.82 E-value=0.0014 Score=69.91 Aligned_cols=41 Identities=32% Similarity=0.316 Sum_probs=31.8
Q ss_pred CCCcccEEEECCChhHHHHHHHHHhcCCCeEEEEecCCCCCC
Q psy1042 114 DDMTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIEEPF 155 (567)
Q Consensus 114 ~~~~yDvIVVGsG~aG~~aA~~Lae~~G~~VlVLE~G~~~~~ 155 (567)
|+.+|||||+|.|..-|.+|..|+.. |.+||.||+.+..+.
T Consensus 1 m~~~yDviI~GTGl~esila~als~~-GkkVLhiD~n~yYGg 41 (438)
T PF00996_consen 1 MDEEYDVIILGTGLTESILAAALSRS-GKKVLHIDRNDYYGG 41 (438)
T ss_dssp --SBESEEEE--SHHHHHHHHHHHHT-T--EEEE-SSSSSCG
T ss_pred CCccceEEEECCCcHHHHHHHHHHhc-CCEEEecCCCCCcCC
Confidence 46789999999999999999999999 999999999988753
No 263
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=96.80 E-value=0.0013 Score=77.80 Aligned_cols=38 Identities=26% Similarity=0.142 Sum_probs=34.3
Q ss_pred CcccEEEECCChhHHHHHHHHHhcCCCeEEEEecCCCCC
Q psy1042 116 MTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIEEP 154 (567)
Q Consensus 116 ~~yDvIVVGsG~aG~~aA~~Lae~~G~~VlVLE~G~~~~ 154 (567)
...+|+|||||+||+++|..|++. |++|+|+|++....
T Consensus 429 ~~~kVaIIG~GPAGLsaA~~La~~-G~~VtV~E~~~~~G 466 (1006)
T PRK12775 429 KLGKVAICGSGPAGLAAAADLVKY-GVDVTVYEALHVVG 466 (1006)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHc-CCcEEEEecCCCCc
Confidence 357999999999999999999999 99999999986653
No 264
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=96.80 E-value=0.0015 Score=74.27 Aligned_cols=37 Identities=30% Similarity=0.257 Sum_probs=33.6
Q ss_pred cccEEEECCChhHHHHHHHHHhcCCCeEEEEecCCCCC
Q psy1042 117 TFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIEEP 154 (567)
Q Consensus 117 ~yDvIVVGsG~aG~~aA~~Lae~~G~~VlVLE~G~~~~ 154 (567)
..+|+|||||++|+++|..|++. |++|+|+|+.+..+
T Consensus 327 ~~~VaIIGaGpAGLsaA~~L~~~-G~~V~V~E~~~~~G 363 (654)
T PRK12769 327 DKRVAIIGAGPAGLACADVLARN-GVAVTVYDRHPEIG 363 (654)
T ss_pred CCEEEEECCCHHHHHHHHHHHHC-CCeEEEEecCCCCC
Confidence 46999999999999999999998 99999999976543
No 265
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=96.80 E-value=0.0013 Score=76.42 Aligned_cols=37 Identities=27% Similarity=0.278 Sum_probs=33.6
Q ss_pred CcccEEEECCChhHHHHHHHHHhcCCCeEEEEecCCCC
Q psy1042 116 MTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIEE 153 (567)
Q Consensus 116 ~~yDvIVVGsG~aG~~aA~~Lae~~G~~VlVLE~G~~~ 153 (567)
...+|+|||||+||+++|+.|++. |++|+|+|+.+..
T Consensus 538 tgKkVaIIGgGPAGLsAA~~Lar~-G~~VtV~Ek~~~~ 574 (1019)
T PRK09853 538 SRKKVAVIGAGPAGLAAAYFLARA-GHPVTVFEREENA 574 (1019)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHc-CCeEEEEeccccc
Confidence 346899999999999999999999 9999999987654
No 266
>KOG0685|consensus
Probab=96.77 E-value=0.0016 Score=68.41 Aligned_cols=41 Identities=39% Similarity=0.299 Sum_probs=35.2
Q ss_pred CcccEEEECCChhHHHHHHHHHhcCCCeEEEEecCCCCCCc
Q psy1042 116 MTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIEEPFF 156 (567)
Q Consensus 116 ~~yDvIVVGsG~aG~~aA~~Lae~~G~~VlVLE~G~~~~~~ 156 (567)
...-+||||||+||++||.+|-+..+..|+|+|+.++.++.
T Consensus 20 ~~~kIvIIGAG~AGLaAA~rLle~gf~~~~IlEa~dRIGGR 60 (498)
T KOG0685|consen 20 GNAKIVIIGAGIAGLAAATRLLENGFIDVLILEASDRIGGR 60 (498)
T ss_pred CCceEEEECCchHHHHHHHHHHHhCCceEEEEEeccccCce
Confidence 34579999999999999999998756789999999887543
No 267
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=96.76 E-value=0.0016 Score=70.80 Aligned_cols=37 Identities=32% Similarity=0.440 Sum_probs=33.7
Q ss_pred CcccEEEECCChhHHHHHHHHHhcCCCeEEEEecCCCC
Q psy1042 116 MTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIEE 153 (567)
Q Consensus 116 ~~yDvIVVGsG~aG~~aA~~Lae~~G~~VlVLE~G~~~ 153 (567)
...+|+|||||++|+++|..|++. |++|+|+|+.+..
T Consensus 139 ~~~~VvIIGgGpaGl~aA~~l~~~-g~~V~lie~~~~~ 175 (457)
T PRK11749 139 TGKKVAVIGAGPAGLTAAHRLARK-GYDVTIFEARDKA 175 (457)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhC-CCeEEEEccCCCC
Confidence 347999999999999999999998 9999999998654
No 268
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=96.76 E-value=0.0016 Score=75.14 Aligned_cols=37 Identities=30% Similarity=0.358 Sum_probs=33.3
Q ss_pred CcccEEEECCChhHHHHHHHHHhcCCCeEEEEecCCCC
Q psy1042 116 MTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIEE 153 (567)
Q Consensus 116 ~~yDvIVVGsG~aG~~aA~~Lae~~G~~VlVLE~G~~~ 153 (567)
...||+|||||+||+++|..|++. |++|+|+|+.+..
T Consensus 430 ~~~~V~IIGaGpAGl~aA~~l~~~-G~~V~v~e~~~~~ 466 (752)
T PRK12778 430 NGKKVAVIGSGPAGLSFAGDLAKR-GYDVTVFEALHEI 466 (752)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHC-CCeEEEEecCCCC
Confidence 457999999999999999999999 9999999986543
No 269
>KOG1335|consensus
Probab=96.70 E-value=0.0015 Score=66.60 Aligned_cols=37 Identities=24% Similarity=0.387 Sum_probs=33.6
Q ss_pred CcccEEEECCChhHHHHHHHHHhcCCCeEEEEecCCCC
Q psy1042 116 MTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIEE 153 (567)
Q Consensus 116 ~~yDvIVVGsG~aG~~aA~~Lae~~G~~VlVLE~G~~~ 153 (567)
.+||+||||+|++|-+||.++|+. |++...+|+....
T Consensus 38 ~d~DvvvIG~GpGGyvAAikAaQl-GlkTacvEkr~~L 74 (506)
T KOG1335|consen 38 NDYDVVVIGGGPGGYVAAIKAAQL-GLKTACVEKRGTL 74 (506)
T ss_pred ccCCEEEECCCCchHHHHHHHHHh-cceeEEEeccCcc
Confidence 579999999999999999999999 9999999985443
No 270
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=96.69 E-value=0.0017 Score=70.68 Aligned_cols=32 Identities=25% Similarity=0.338 Sum_probs=30.6
Q ss_pred cEEEECCChhHHHHHHHHHhcCCCeEEEEecCC
Q psy1042 119 DFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGI 151 (567)
Q Consensus 119 DvIVVGsG~aG~~aA~~Lae~~G~~VlVLE~G~ 151 (567)
|+||||+|++|+.+|..|++. |.+|+|+|++.
T Consensus 3 ~vvviG~G~~G~~~a~~~~~~-g~~v~~~e~~~ 34 (466)
T PRK07845 3 RIVIIGGGPGGYEAALVAAQL-GADVTVIERDG 34 (466)
T ss_pred cEEEECCCHHHHHHHHHHHhC-CCeEEEEEccC
Confidence 799999999999999999999 99999999875
No 271
>PLN02487 zeta-carotene desaturase
Probab=96.67 E-value=0.0025 Score=70.65 Aligned_cols=62 Identities=10% Similarity=0.125 Sum_probs=43.6
Q ss_pred HHhcCCCeEEecceEEEEEEeCCCCCCCCccEEEEEEEEeCCEEEEEEcCcEEEEcCCCCccHHHH
Q psy1042 324 IRKKRKNLTILTEAHVTRIICDKTPNKHKKLVAKSVEFFYKKKLRRARAKKEVISSAGAINSPKIL 389 (567)
Q Consensus 324 a~~~~~gv~I~~~t~V~~I~~d~~~~~~~~~rv~GV~~~~~g~~~~v~A~k~VVLAAGa~~Tp~LL 389 (567)
.++ +.|.+|++++.|++|..+.+++ +..+|+||++..++....+.|+ .||+|++.....+||
T Consensus 304 ~L~-~~Gg~V~l~~~V~~I~~~~~~~--g~~~v~gv~~~~~~~~~~~~aD-~VV~A~p~~~~~~Ll 365 (569)
T PLN02487 304 YIT-DRGGRFHLRWGCREILYDKSPD--GETYVTGLKVSKATEKEIVKAD-AYVAACDVPGIKRLL 365 (569)
T ss_pred HHH-HcCCEEEeCCceEEEEEecCCC--CceeEEEEEEecCCCceEEECC-EEEECCCHHHHHHhC
Confidence 344 6899999999999999974211 1125899998533333457886 799999976665554
No 272
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=96.60 E-value=0.002 Score=74.40 Aligned_cols=35 Identities=23% Similarity=0.308 Sum_probs=31.5
Q ss_pred cEEEECCChhHHHHHHHHHhc-CCCeEEEEecCCCC
Q psy1042 119 DFIIIGAGSAGCVLANRLSEI-KKWKVLLLEAGIEE 153 (567)
Q Consensus 119 DvIVVGsG~aG~~aA~~Lae~-~G~~VlVLE~G~~~ 153 (567)
+|+|||||++|+++|..|++. +|++|+|+|+.+..
T Consensus 2 ~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~~ 37 (765)
T PRK08255 2 RIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRPY 37 (765)
T ss_pred eEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCCC
Confidence 699999999999999999986 48999999998753
No 273
>PLN02852 ferredoxin-NADP+ reductase
Probab=96.58 E-value=0.0038 Score=67.87 Aligned_cols=38 Identities=21% Similarity=0.290 Sum_probs=32.8
Q ss_pred cccEEEECCChhHHHHHHHHHhc-CCCeEEEEecCCCCC
Q psy1042 117 TFDFIIIGAGSAGCVLANRLSEI-KKWKVLLLEAGIEEP 154 (567)
Q Consensus 117 ~yDvIVVGsG~aG~~aA~~Lae~-~G~~VlVLE~G~~~~ 154 (567)
...|+|||||+||+.||..|++. .|++|.|+|+-+...
T Consensus 26 ~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~pg 64 (491)
T PLN02852 26 PLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTPF 64 (491)
T ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCCc
Confidence 35799999999999999999972 399999999987653
No 274
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=96.58 E-value=0.03 Score=59.16 Aligned_cols=56 Identities=11% Similarity=0.152 Sum_probs=40.8
Q ss_pred CCCeEEecceEEEEEEeCCCCCCCCccEEEEEEEEeCCEEEEEEcCcEEEEcCCCCccHHHHHhCCCC
Q psy1042 328 RKNLTILTEAHVTRIICDKTPNKHKKLVAKSVEFFYKKKLRRARAKKEVISSAGAINSPKILMLSGIG 395 (567)
Q Consensus 328 ~~gv~I~~~t~V~~I~~d~~~~~~~~~rv~GV~~~~~g~~~~v~A~k~VVLAAGa~~Tp~LLl~SGIG 395 (567)
+.|+++++++.|++|..+ ++ . ..|.+. +|+ ++.++ .||+|+|....+.++..+|+.
T Consensus 195 ~~gV~i~~~~~v~~i~~~--~~-----~-~~v~~~-~g~--~i~~D-~vI~a~G~~p~~~l~~~~gl~ 250 (377)
T PRK04965 195 EMGVHLLLKSQLQGLEKT--DS-----G-IRATLD-SGR--SIEVD-AVIAAAGLRPNTALARRAGLA 250 (377)
T ss_pred hCCCEEEECCeEEEEEcc--CC-----E-EEEEEc-CCc--EEECC-EEEECcCCCcchHHHHHCCCC
Confidence 578999999999999754 22 2 234443 332 68896 799999987777888888874
No 275
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=96.58 E-value=0.023 Score=61.75 Aligned_cols=32 Identities=28% Similarity=0.399 Sum_probs=29.9
Q ss_pred ccEEEECCChhHHHHHHHHHhcCCCeEEEEecC
Q psy1042 118 FDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAG 150 (567)
Q Consensus 118 yDvIVVGsG~aG~~aA~~Lae~~G~~VlVLE~G 150 (567)
-+++|||+|.+|+-+|..|++. |.+|.|+|++
T Consensus 171 ~~vvViGgG~~g~e~A~~l~~~-g~~Vtli~~~ 202 (461)
T TIGR01350 171 ESLVIIGGGVIGIEFASIFASL-GSKVTVIEML 202 (461)
T ss_pred CeEEEECCCHHHHHHHHHHHHc-CCcEEEEEcC
Confidence 3799999999999999999998 9999999975
No 276
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=96.57 E-value=0.022 Score=60.54 Aligned_cols=31 Identities=32% Similarity=0.541 Sum_probs=29.3
Q ss_pred cEEEECCChhHHHHHHHHHhcCCCeEEEEecC
Q psy1042 119 DFIIIGAGSAGCVLANRLSEIKKWKVLLLEAG 150 (567)
Q Consensus 119 DvIVVGsG~aG~~aA~~Lae~~G~~VlVLE~G 150 (567)
.++|||+|..|+-+|..|++. |.+|.|+|++
T Consensus 146 ~vvViGgG~ig~E~A~~l~~~-g~~Vtlv~~~ 176 (396)
T PRK09754 146 SVVIVGAGTIGLELAASATQR-RCKVTVIELA 176 (396)
T ss_pred eEEEECCCHHHHHHHHHHHHc-CCeEEEEecC
Confidence 699999999999999999998 9999999975
No 277
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=96.54 E-value=0.02 Score=62.28 Aligned_cols=32 Identities=25% Similarity=0.455 Sum_probs=29.9
Q ss_pred ccEEEECCChhHHHHHHHHHhcCCCeEEEEecC
Q psy1042 118 FDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAG 150 (567)
Q Consensus 118 yDvIVVGsG~aG~~aA~~Lae~~G~~VlVLE~G 150 (567)
-.++|||+|..|+-+|..|++. |.+|.|+|++
T Consensus 167 ~~vvIIGgG~~g~E~A~~l~~~-g~~Vtli~~~ 198 (463)
T TIGR02053 167 ESLAVIGGGAIGVELAQAFARL-GSEVTILQRS 198 (463)
T ss_pred CeEEEECCCHHHHHHHHHHHHc-CCcEEEEEcC
Confidence 3799999999999999999998 9999999976
No 278
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=96.51 E-value=0.032 Score=60.65 Aligned_cols=32 Identities=25% Similarity=0.412 Sum_probs=29.7
Q ss_pred cEEEECCChhHHHHHHHHHhcCCCeEEEEecCC
Q psy1042 119 DFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGI 151 (567)
Q Consensus 119 DvIVVGsG~aG~~aA~~Lae~~G~~VlVLE~G~ 151 (567)
.++|||+|..|+-+|..|++. |.+|.|+|+++
T Consensus 174 ~vvVvGgG~~g~E~A~~l~~~-g~~Vtli~~~~ 205 (462)
T PRK06416 174 SLVVIGGGYIGVEFASAYASL-GAEVTIVEALP 205 (462)
T ss_pred eEEEECCCHHHHHHHHHHHHc-CCeEEEEEcCC
Confidence 699999999999999999998 99999999753
No 279
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=96.48 E-value=0.0033 Score=71.33 Aligned_cols=36 Identities=31% Similarity=0.326 Sum_probs=33.2
Q ss_pred cccEEEECCChhHHHHHHHHHhcCCCeEEEEecCCCC
Q psy1042 117 TFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIEE 153 (567)
Q Consensus 117 ~yDvIVVGsG~aG~~aA~~Lae~~G~~VlVLE~G~~~ 153 (567)
..+|+|||+|++|+++|..|++. |++|+|+|+.+..
T Consensus 193 ~k~VaIIGaGpAGl~aA~~La~~-G~~Vtv~e~~~~~ 228 (652)
T PRK12814 193 GKKVAIIGAGPAGLTAAYYLLRK-GHDVTIFDANEQA 228 (652)
T ss_pred CCEEEEECCCHHHHHHHHHHHHC-CCcEEEEecCCCC
Confidence 46899999999999999999998 9999999998664
No 280
>PLN03000 amine oxidase
Probab=96.45 E-value=0.0034 Score=71.91 Aligned_cols=39 Identities=28% Similarity=0.353 Sum_probs=35.2
Q ss_pred CcccEEEECCChhHHHHHHHHHhcCCCeEEEEecCCCCCC
Q psy1042 116 MTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIEEPF 155 (567)
Q Consensus 116 ~~yDvIVVGsG~aG~~aA~~Lae~~G~~VlVLE~G~~~~~ 155 (567)
...||||||+|++|+++|..|++. |++|+|+|+....++
T Consensus 183 ~~~~VvIIGaG~aGL~aA~~L~~~-G~~V~VlE~~~riGG 221 (881)
T PLN03000 183 SKSSVVIVGAGLSGLAAARQLMRF-GFKVTVLEGRKRPGG 221 (881)
T ss_pred CCCCEEEECccHHHHHHHHHHHHC-CCcEEEEEccCcCCC
Confidence 357999999999999999999998 999999999877643
No 281
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=96.43 E-value=0.035 Score=60.41 Aligned_cols=31 Identities=29% Similarity=0.358 Sum_probs=29.3
Q ss_pred cEEEECCChhHHHHHHHHHhcCCCeEEEEecC
Q psy1042 119 DFIIIGAGSAGCVLANRLSEIKKWKVLLLEAG 150 (567)
Q Consensus 119 DvIVVGsG~aG~~aA~~Lae~~G~~VlVLE~G 150 (567)
.++|||+|..|+-+|..|++. |.+|.|+|++
T Consensus 174 ~vvVIGgG~ig~E~A~~l~~~-G~~Vtlv~~~ 204 (466)
T PRK07818 174 SIVIAGAGAIGMEFAYVLKNY-GVDVTIVEFL 204 (466)
T ss_pred eEEEECCcHHHHHHHHHHHHc-CCeEEEEecC
Confidence 699999999999999999998 9999999965
No 282
>KOG1276|consensus
Probab=96.42 E-value=0.0039 Score=64.63 Aligned_cols=40 Identities=20% Similarity=0.291 Sum_probs=34.1
Q ss_pred cccEEEECCChhHHHHHHHHHhc-CCCeEEEEecCCCCCCc
Q psy1042 117 TFDFIIIGAGSAGCVLANRLSEI-KKWKVLLLEAGIEEPFF 156 (567)
Q Consensus 117 ~yDvIVVGsG~aG~~aA~~Lae~-~G~~VlVLE~G~~~~~~ 156 (567)
.-+|+|||||++|+++|+.|++. |...|.|.|++++.+++
T Consensus 11 ~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~RvGGw 51 (491)
T KOG1276|consen 11 GMTVAVVGGGISGLCAAYYLARLGPDVTITLFEASPRVGGW 51 (491)
T ss_pred cceEEEECCchhHHHHHHHHHhcCCCceEEEEecCCcccce
Confidence 46899999999999999999997 44567789999987654
No 283
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=96.39 E-value=0.0043 Score=67.56 Aligned_cols=37 Identities=27% Similarity=0.325 Sum_probs=33.5
Q ss_pred CcccEEEECCChhHHHHHHHHHhcCCCeEEEEecCCCC
Q psy1042 116 MTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIEE 153 (567)
Q Consensus 116 ~~yDvIVVGsG~aG~~aA~~Lae~~G~~VlVLE~G~~~ 153 (567)
...+|+|||+|++|+++|..|++. |++|+|+|+.+..
T Consensus 140 ~~~~V~IIG~GpaGl~aA~~l~~~-G~~V~i~e~~~~~ 176 (467)
T TIGR01318 140 TGKRVAVIGAGPAGLACADILARA-GVQVVVFDRHPEI 176 (467)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHc-CCeEEEEecCCCC
Confidence 346999999999999999999998 9999999998654
No 284
>PLN02976 amine oxidase
Probab=96.38 E-value=0.0039 Score=74.06 Aligned_cols=38 Identities=32% Similarity=0.381 Sum_probs=34.4
Q ss_pred CcccEEEECCChhHHHHHHHHHhcCCCeEEEEecCCCCC
Q psy1042 116 MTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIEEP 154 (567)
Q Consensus 116 ~~yDvIVVGsG~aG~~aA~~Lae~~G~~VlVLE~G~~~~ 154 (567)
..+||+|||+|++|+++|++|++. |++|+|||+....+
T Consensus 692 ~~~dV~IIGAG~AGLaAA~~L~~~-G~~V~VlEa~~~vG 729 (1713)
T PLN02976 692 DRKKIIVVGAGPAGLTAARHLQRQ-GFSVTVLEARSRIG 729 (1713)
T ss_pred CCCcEEEECchHHHHHHHHHHHHC-CCcEEEEeeccCCC
Confidence 458999999999999999999998 99999999976654
No 285
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=96.36 E-value=0.0042 Score=71.70 Aligned_cols=35 Identities=20% Similarity=0.333 Sum_probs=32.0
Q ss_pred CcccEEEECCChhHHHHHHHHHhcCCCeEEEEecCC
Q psy1042 116 MTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGI 151 (567)
Q Consensus 116 ~~yDvIVVGsG~aG~~aA~~Lae~~G~~VlVLE~G~ 151 (567)
....|+|||||+||+++|+.|++. |++|+|+|+.+
T Consensus 382 tgKKVaVVGaGPAGLsAA~~La~~-Gh~Vtv~E~~~ 416 (1028)
T PRK06567 382 TNYNILVTGLGPAGFSLSYYLLRS-GHNVTAIDGLK 416 (1028)
T ss_pred CCCeEEEECcCHHHHHHHHHHHhC-CCeEEEEcccc
Confidence 346899999999999999999998 99999999864
No 286
>PRK06370 mercuric reductase; Validated
Probab=96.34 E-value=0.04 Score=59.92 Aligned_cols=32 Identities=28% Similarity=0.468 Sum_probs=29.8
Q ss_pred cEEEECCChhHHHHHHHHHhcCCCeEEEEecCC
Q psy1042 119 DFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGI 151 (567)
Q Consensus 119 DvIVVGsG~aG~~aA~~Lae~~G~~VlVLE~G~ 151 (567)
.++|||+|..|+-+|..|++. |.+|.|+|+++
T Consensus 173 ~vvVIGgG~~g~E~A~~l~~~-G~~Vtli~~~~ 204 (463)
T PRK06370 173 HLVIIGGGYIGLEFAQMFRRF-GSEVTVIERGP 204 (463)
T ss_pred EEEEECCCHHHHHHHHHHHHc-CCeEEEEEcCC
Confidence 799999999999999999998 99999999753
No 287
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=96.32 E-value=0.0046 Score=64.70 Aligned_cols=36 Identities=31% Similarity=0.345 Sum_probs=33.1
Q ss_pred ccEEEECCChhHHHHHHHHHhcCCCeEEEEecCCCCC
Q psy1042 118 FDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIEEP 154 (567)
Q Consensus 118 yDvIVVGsG~aG~~aA~~Lae~~G~~VlVLE~G~~~~ 154 (567)
.+|+|||+|++|+.+|..|++. |++|+|+|+.+...
T Consensus 19 ~~VvIIG~G~aGl~aA~~l~~~-g~~v~lie~~~~~g 54 (352)
T PRK12770 19 KKVAIIGAGPAGLAAAGYLACL-GYEVHVYDKLPEPG 54 (352)
T ss_pred CEEEEECcCHHHHHHHHHHHHC-CCcEEEEeCCCCCC
Confidence 5899999999999999999998 99999999987653
No 288
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=96.24 E-value=0.063 Score=59.26 Aligned_cols=32 Identities=31% Similarity=0.370 Sum_probs=29.9
Q ss_pred cEEEECCChhHHHHHHHHHhcCCCeEEEEecCC
Q psy1042 119 DFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGI 151 (567)
Q Consensus 119 DvIVVGsG~aG~~aA~~Lae~~G~~VlVLE~G~ 151 (567)
+|+|||+|..|+-+|..|+.. +.+|.|+++++
T Consensus 353 ~VvVVGgG~~g~e~A~~L~~~-~~~Vtlv~~~~ 384 (517)
T PRK15317 353 RVAVIGGGNSGVEAAIDLAGI-VKHVTVLEFAP 384 (517)
T ss_pred EEEEECCCHHHHHHHHHHHhc-CCEEEEEEECc
Confidence 799999999999999999998 99999999763
No 289
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=96.23 E-value=0.005 Score=69.73 Aligned_cols=37 Identities=27% Similarity=0.258 Sum_probs=33.8
Q ss_pred cccEEEECCChhHHHHHHHHHhcCCCeEEEEecCCCCC
Q psy1042 117 TFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIEEP 154 (567)
Q Consensus 117 ~yDvIVVGsG~aG~~aA~~Lae~~G~~VlVLE~G~~~~ 154 (567)
..+|+|||||++|+++|..|++. |++|+|+|+.+...
T Consensus 310 ~kkVaIIG~GpaGl~aA~~L~~~-G~~Vtv~e~~~~~G 346 (639)
T PRK12809 310 SEKVAVIGAGPAGLGCADILARA-GVQVDVFDRHPEIG 346 (639)
T ss_pred CCEEEEECcCHHHHHHHHHHHHc-CCcEEEEeCCCCCC
Confidence 46899999999999999999998 99999999987653
No 290
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=96.22 E-value=0.0052 Score=67.22 Aligned_cols=36 Identities=22% Similarity=0.309 Sum_probs=33.1
Q ss_pred cccEEEECCChhHHHHHHHHHhcCCCeEEEEecCCCC
Q psy1042 117 TFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIEE 153 (567)
Q Consensus 117 ~yDvIVVGsG~aG~~aA~~Lae~~G~~VlVLE~G~~~ 153 (567)
..+|+|||+|++|+++|..|++. |++|+|+|+.+..
T Consensus 143 ~~~V~IIGaG~aGl~aA~~L~~~-g~~V~v~e~~~~~ 178 (485)
T TIGR01317 143 GKKVAVVGSGPAGLAAADQLNRA-GHTVTVFEREDRC 178 (485)
T ss_pred CCEEEEECCcHHHHHHHHHHHHc-CCeEEEEecCCCC
Confidence 36999999999999999999998 9999999998754
No 291
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=96.19 E-value=0.042 Score=59.95 Aligned_cols=32 Identities=28% Similarity=0.453 Sum_probs=29.9
Q ss_pred cEEEECCChhHHHHHHHHHhcCCCeEEEEecCC
Q psy1042 119 DFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGI 151 (567)
Q Consensus 119 DvIVVGsG~aG~~aA~~Lae~~G~~VlVLE~G~ 151 (567)
.++|||+|.+|+-+|..|++. |.+|.|||+++
T Consensus 182 ~vvIIGgG~~G~E~A~~l~~~-g~~Vtli~~~~ 213 (472)
T PRK05976 182 SLVIVGGGVIGLEWASMLADF-GVEVTVVEAAD 213 (472)
T ss_pred EEEEECCCHHHHHHHHHHHHc-CCeEEEEEecC
Confidence 799999999999999999998 99999999763
No 292
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=96.15 E-value=0.058 Score=58.60 Aligned_cols=31 Identities=32% Similarity=0.619 Sum_probs=29.3
Q ss_pred cEEEECCChhHHHHHHHHHhcCCCeEEEEecC
Q psy1042 119 DFIIIGAGSAGCVLANRLSEIKKWKVLLLEAG 150 (567)
Q Consensus 119 DvIVVGsG~aG~~aA~~Lae~~G~~VlVLE~G 150 (567)
.++|||+|.+|+-+|..|++. |.+|.|+|++
T Consensus 172 ~vvIIGgG~iG~E~A~~l~~~-g~~Vtli~~~ 202 (458)
T PRK06912 172 SLLIVGGGVIGCEFASIYSRL-GTKVTIVEMA 202 (458)
T ss_pred cEEEECCCHHHHHHHHHHHHc-CCeEEEEecC
Confidence 699999999999999999998 9999999975
No 293
>PTZ00188 adrenodoxin reductase; Provisional
Probab=96.14 E-value=0.0065 Score=65.39 Aligned_cols=37 Identities=27% Similarity=0.268 Sum_probs=31.9
Q ss_pred ccEEEECCChhHHHHHHHHHhcCCCeEEEEecCCCCC
Q psy1042 118 FDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIEEP 154 (567)
Q Consensus 118 yDvIVVGsG~aG~~aA~~Lae~~G~~VlVLE~G~~~~ 154 (567)
.-|+|||||+||+.+|.+|+...|++|.|+|+-+...
T Consensus 40 krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~pg 76 (506)
T PTZ00188 40 FKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNPY 76 (506)
T ss_pred CEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCCc
Confidence 4699999999999999987643399999999988764
No 294
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=96.10 E-value=0.081 Score=58.38 Aligned_cols=31 Identities=35% Similarity=0.472 Sum_probs=29.2
Q ss_pred cEEEECCChhHHHHHHHHHhcCCCeEEEEecC
Q psy1042 119 DFIIIGAGSAGCVLANRLSEIKKWKVLLLEAG 150 (567)
Q Consensus 119 DvIVVGsG~aG~~aA~~Lae~~G~~VlVLE~G 150 (567)
.++|||+|..|+-+|..|++. |.+|.|+|++
T Consensus 354 ~VvViGgG~~g~E~A~~L~~~-g~~Vtli~~~ 384 (515)
T TIGR03140 354 DVAVIGGGNSGIEAAIDLAGI-VRHVTVLEFA 384 (515)
T ss_pred EEEEECCcHHHHHHHHHHHhc-CcEEEEEEeC
Confidence 799999999999999999998 9999999965
No 295
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=96.06 E-value=0.055 Score=63.05 Aligned_cols=60 Identities=13% Similarity=0.179 Sum_probs=43.6
Q ss_pred HHhcCCCeEEecceEEEEEEeCCCCCCCCccEEEEEEEEeCCEEEEEEcCcEEEEcCCCCccHHHHHhCCC
Q psy1042 324 IRKKRKNLTILTEAHVTRIICDKTPNKHKKLVAKSVEFFYKKKLRRARAKKEVISSAGAINSPKILMLSGI 394 (567)
Q Consensus 324 a~~~~~gv~I~~~t~V~~I~~d~~~~~~~~~rv~GV~~~~~g~~~~v~A~k~VVLAAGa~~Tp~LLl~SGI 394 (567)
.++ +.|++|++++.|++|..+.. + .+..|.+.++ + .+.++ .||+|+|.-....|+..+|+
T Consensus 196 ~L~-~~GV~v~~~~~v~~I~~~~~-~-----~~~~v~~~dG-~--~i~~D-~Vv~A~G~rPn~~L~~~~Gl 255 (847)
T PRK14989 196 KIE-SMGVRVHTSKNTLEIVQEGV-E-----ARKTMRFADG-S--ELEVD-FIVFSTGIRPQDKLATQCGL 255 (847)
T ss_pred HHH-HCCCEEEcCCeEEEEEecCC-C-----ceEEEEECCC-C--EEEcC-EEEECCCcccCchHHhhcCc
Confidence 344 57899999999999975421 2 3455665443 3 58897 79999998877777777876
No 296
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=96.06 E-value=0.007 Score=61.20 Aligned_cols=38 Identities=29% Similarity=0.211 Sum_probs=33.3
Q ss_pred cccEEEECCChhHHHHHHHHHhcCCCeEEEEecCCCCCCc
Q psy1042 117 TFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIEEPFF 156 (567)
Q Consensus 117 ~yDvIVVGsG~aG~~aA~~Lae~~G~~VlVLE~G~~~~~~ 156 (567)
.-++.|||+|++|++||+.|+.. .+|.|+|++...++.
T Consensus 8 r~~IAVIGsGisGLSAA~~Ls~r--hdVTLfEA~~rlGGh 45 (447)
T COG2907 8 RRKIAVIGSGISGLSAAWLLSRR--HDVTLFEADRRLGGH 45 (447)
T ss_pred CcceEEEcccchhhhhHHhhhcc--cceEEEeccccccCc
Confidence 35799999999999999999985 899999999887543
No 297
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=96.04 E-value=0.049 Score=63.22 Aligned_cols=56 Identities=23% Similarity=0.311 Sum_probs=42.5
Q ss_pred CCCeEEecceEEEEEEeCCCCCCCCccEEEEEEEEeCCEEEEEEcCcEEEEcCCCCccHHHHHhCCCC
Q psy1042 328 RKNLTILTEAHVTRIICDKTPNKHKKLVAKSVEFFYKKKLRRARAKKEVISSAGAINSPKILMLSGIG 395 (567)
Q Consensus 328 ~~gv~I~~~t~V~~I~~d~~~~~~~~~rv~GV~~~~~g~~~~v~A~k~VVLAAGa~~Tp~LLl~SGIG 395 (567)
+.|++|++++.|++|.-+ + ++.+|.+.++ + .+.++ .||+|+|.-..+.|+..+|+.
T Consensus 194 ~~GV~v~~~~~v~~i~~~---~-----~~~~v~~~dG-~--~i~~D-~Vi~a~G~~Pn~~la~~~gl~ 249 (785)
T TIGR02374 194 QKGLTFLLEKDTVEIVGA---T-----KADRIRFKDG-S--SLEAD-LIVMAAGIRPNDELAVSAGIK 249 (785)
T ss_pred HcCCEEEeCCceEEEEcC---C-----ceEEEEECCC-C--EEEcC-EEEECCCCCcCcHHHHhcCCc
Confidence 578999999999998643 2 5677776544 2 68897 799999977777777777763
No 298
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=96.00 E-value=0.0078 Score=67.19 Aligned_cols=37 Identities=30% Similarity=0.369 Sum_probs=33.1
Q ss_pred cccEEEECCChhHHHHHHHHHhcCCCeEEEEecCCCCC
Q psy1042 117 TFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIEEP 154 (567)
Q Consensus 117 ~yDvIVVGsG~aG~~aA~~Lae~~G~~VlVLE~G~~~~ 154 (567)
.-+|+|||+|++|+++|..|++. |++|+|+|+.+..+
T Consensus 137 g~~V~VIGaGpaGL~aA~~l~~~-G~~V~v~e~~~~~G 173 (564)
T PRK12771 137 GKRVAVIGGGPAGLSAAYHLRRM-GHAVTIFEAGPKLG 173 (564)
T ss_pred CCEEEEECCCHHHHHHHHHHHHC-CCeEEEEecCCCCC
Confidence 45899999999999999999998 99999999876543
No 299
>KOG3855|consensus
Probab=95.96 E-value=0.0062 Score=62.88 Aligned_cols=37 Identities=41% Similarity=0.625 Sum_probs=31.9
Q ss_pred CcccEEEECCChhHHHHHHHHHhcC---CCeEEEEecCCC
Q psy1042 116 MTFDFIIIGAGSAGCVLANRLSEIK---KWKVLLLEAGIE 152 (567)
Q Consensus 116 ~~yDvIVVGsG~aG~~aA~~Lae~~---G~~VlVLE~G~~ 152 (567)
..|||||||||+.|.+.|..|..+| -+||+|+|.+..
T Consensus 35 ~~~dVvIvGgGpvg~aLAa~l~snp~~~~~kv~Lld~~~s 74 (481)
T KOG3855|consen 35 AKYDVVIVGGGPVGLALAAALGSNPPFQDKKVLLLDAGDS 74 (481)
T ss_pred ccCCEEEECCchHHHHHHHHhccCCccchheeeEEecccC
Confidence 4799999999999999999998753 469999999844
No 300
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=95.84 E-value=0.087 Score=57.37 Aligned_cols=31 Identities=26% Similarity=0.375 Sum_probs=29.2
Q ss_pred cEEEECCChhHHHHHHHHHhcCCCeEEEEecC
Q psy1042 119 DFIIIGAGSAGCVLANRLSEIKKWKVLLLEAG 150 (567)
Q Consensus 119 DvIVVGsG~aG~~aA~~Lae~~G~~VlVLE~G 150 (567)
.++|||+|..|+-+|..|++. |.+|.|+|++
T Consensus 176 ~vvIIGgG~ig~E~A~~l~~~-G~~Vtlie~~ 206 (466)
T PRK06115 176 HLVVIGAGVIGLELGSVWRRL-GAQVTVVEYL 206 (466)
T ss_pred eEEEECCCHHHHHHHHHHHHc-CCeEEEEeCC
Confidence 699999999999999999998 9999999975
No 301
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=95.79 E-value=0.11 Score=56.58 Aligned_cols=31 Identities=32% Similarity=0.415 Sum_probs=29.3
Q ss_pred cEEEECCChhHHHHHHHHHhcCCCeEEEEecC
Q psy1042 119 DFIIIGAGSAGCVLANRLSEIKKWKVLLLEAG 150 (567)
Q Consensus 119 DvIVVGsG~aG~~aA~~Lae~~G~~VlVLE~G 150 (567)
.++|||+|..|+-+|..|++. |.+|.|+|++
T Consensus 185 ~vvVvGgG~~g~E~A~~l~~~-g~~Vtli~~~ 215 (475)
T PRK06327 185 KLAVIGAGVIGLELGSVWRRL-GAEVTILEAL 215 (475)
T ss_pred eEEEECCCHHHHHHHHHHHHc-CCeEEEEeCC
Confidence 699999999999999999998 9999999975
No 302
>PRK13984 putative oxidoreductase; Provisional
Probab=95.75 E-value=0.012 Score=66.22 Aligned_cols=37 Identities=24% Similarity=0.319 Sum_probs=33.8
Q ss_pred CcccEEEECCChhHHHHHHHHHhcCCCeEEEEecCCCC
Q psy1042 116 MTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIEE 153 (567)
Q Consensus 116 ~~yDvIVVGsG~aG~~aA~~Lae~~G~~VlVLE~G~~~ 153 (567)
...+|+|||+|++|+++|..|++. |++|+|+|+.+..
T Consensus 282 ~~~~v~IIGaG~aGl~aA~~L~~~-G~~v~vie~~~~~ 318 (604)
T PRK13984 282 KNKKVAIVGSGPAGLSAAYFLATM-GYEVTVYESLSKP 318 (604)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHC-CCeEEEEecCCCC
Confidence 457899999999999999999998 9999999998754
No 303
>PRK10262 thioredoxin reductase; Provisional
Probab=95.74 E-value=0.19 Score=51.66 Aligned_cols=31 Identities=29% Similarity=0.337 Sum_probs=29.4
Q ss_pred cEEEECCChhHHHHHHHHHhcCCCeEEEEecC
Q psy1042 119 DFIIIGAGSAGCVLANRLSEIKKWKVLLLEAG 150 (567)
Q Consensus 119 DvIVVGsG~aG~~aA~~Lae~~G~~VlVLE~G 150 (567)
.++|||+|..|+-+|..|++. |.+|.++++.
T Consensus 148 ~vvVvGgG~~g~e~A~~l~~~-~~~Vtlv~~~ 178 (321)
T PRK10262 148 KVAVIGGGNTAVEEALYLSNI-ASEVHLIHRR 178 (321)
T ss_pred EEEEECCCHHHHHHHHHHHhh-CCEEEEEEEC
Confidence 699999999999999999998 9999999975
No 304
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=95.67 E-value=0.12 Score=55.62 Aligned_cols=31 Identities=32% Similarity=0.472 Sum_probs=29.1
Q ss_pred cEEEECCChhHHHHHHHHHhcCCCeEEEEecC
Q psy1042 119 DFIIIGAGSAGCVLANRLSEIKKWKVLLLEAG 150 (567)
Q Consensus 119 DvIVVGsG~aG~~aA~~Lae~~G~~VlVLE~G 150 (567)
.++|||+|.+|+-+|..|++. |.+|.|++++
T Consensus 139 ~vvViGgG~~g~e~A~~l~~~-g~~Vtli~~~ 169 (427)
T TIGR03385 139 NVVIIGGGYIGIEMAEALRER-GKNVTLIHRS 169 (427)
T ss_pred eEEEECCCHHHHHHHHHHHhC-CCcEEEEECC
Confidence 799999999999999999998 9999999975
No 305
>PRK12831 putative oxidoreductase; Provisional
Probab=95.64 E-value=0.17 Score=54.97 Aligned_cols=31 Identities=13% Similarity=0.184 Sum_probs=28.8
Q ss_pred cEEEECCChhHHHHHHHHHhcCCCeEEEEecC
Q psy1042 119 DFIIIGAGSAGCVLANRLSEIKKWKVLLLEAG 150 (567)
Q Consensus 119 DvIVVGsG~aG~~aA~~Lae~~G~~VlVLE~G 150 (567)
.|+|||+|..|+-+|..|++. |.+|.|+++.
T Consensus 283 ~VvVIGgG~va~d~A~~l~r~-Ga~Vtlv~r~ 313 (464)
T PRK12831 283 KVAVVGGGNVAMDAARTALRL-GAEVHIVYRR 313 (464)
T ss_pred eEEEECCcHHHHHHHHHHHHc-CCEEEEEeec
Confidence 799999999999999999998 9999999853
No 306
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=95.62 E-value=0.22 Score=50.17 Aligned_cols=32 Identities=25% Similarity=0.297 Sum_probs=29.5
Q ss_pred ccEEEECCChhHHHHHHHHHhcCCCeEEEEecC
Q psy1042 118 FDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAG 150 (567)
Q Consensus 118 yDvIVVGsG~aG~~aA~~Lae~~G~~VlVLE~G 150 (567)
-.++|||+|..|+-+|..|++. +.+|.+++++
T Consensus 142 ~~v~ViG~G~~~~e~a~~l~~~-~~~V~~v~~~ 173 (300)
T TIGR01292 142 KEVAVVGGGDSAIEEALYLTRI-AKKVTLVHRR 173 (300)
T ss_pred CEEEEECCChHHHHHHHHHHhh-cCEEEEEEeC
Confidence 3799999999999999999998 9999999975
No 307
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=95.45 E-value=0.016 Score=61.59 Aligned_cols=63 Identities=10% Similarity=0.186 Sum_probs=43.5
Q ss_pred HhhHHHHhcCCCeEEecceEEEEEEeCCCCCCCCccEEEEEEEEeCCEEEEEEcCcEEEEcCCCCccHHHHHhCCCC
Q psy1042 319 AFIRPIRKKRKNLTILTEAHVTRIICDKTPNKHKKLVAKSVEFFYKKKLRRARAKKEVISSAGAINSPKILMLSGIG 395 (567)
Q Consensus 319 ~~L~~a~~~~~gv~I~~~t~V~~I~~d~~~~~~~~~rv~GV~~~~~g~~~~v~A~k~VVLAAGa~~Tp~LLl~SGIG 395 (567)
.++...++ +.|++|++++.|++|..+ + .+ .|.+. +|+ ++.++ .||+|+|......|+..+|+.
T Consensus 190 ~~l~~~l~-~~GV~i~~~~~V~~i~~~---~-----~~-~v~l~-~g~--~i~aD-~Vv~a~G~~pn~~l~~~~gl~ 252 (396)
T PRK09754 190 RYLLQRHQ-QAGVRILLNNAIEHVVDG---E-----KV-ELTLQ-SGE--TLQAD-VVIYGIGISANDQLAREANLD 252 (396)
T ss_pred HHHHHHHH-HCCCEEEeCCeeEEEEcC---C-----EE-EEEEC-CCC--EEECC-EEEECCCCChhhHHHHhcCCC
Confidence 34554555 689999999999998642 2 22 34443 333 58896 799999987777777777763
No 308
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=95.27 E-value=0.15 Score=55.42 Aligned_cols=31 Identities=29% Similarity=0.560 Sum_probs=29.3
Q ss_pred cEEEECCChhHHHHHHHHHhcCCCeEEEEecC
Q psy1042 119 DFIIIGAGSAGCVLANRLSEIKKWKVLLLEAG 150 (567)
Q Consensus 119 DvIVVGsG~aG~~aA~~Lae~~G~~VlVLE~G 150 (567)
.++|||+|..|+-+|..|++. |.+|.|||++
T Consensus 179 ~vvVIGgG~ig~E~A~~l~~~-g~~Vtli~~~ 209 (466)
T PRK07845 179 HLIVVGSGVTGAEFASAYTEL-GVKVTLVSSR 209 (466)
T ss_pred eEEEECCCHHHHHHHHHHHHc-CCeEEEEEcC
Confidence 699999999999999999998 9999999975
No 309
>PTZ00058 glutathione reductase; Provisional
Probab=95.06 E-value=0.15 Score=56.68 Aligned_cols=32 Identities=19% Similarity=0.246 Sum_probs=29.8
Q ss_pred ccEEEECCChhHHHHHHHHHhcCCCeEEEEecC
Q psy1042 118 FDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAG 150 (567)
Q Consensus 118 yDvIVVGsG~aG~~aA~~Lae~~G~~VlVLE~G 150 (567)
-.++|||+|..|+-+|..|++. |.+|.|+|++
T Consensus 238 k~VvIIGgG~iGlE~A~~l~~~-G~~Vtli~~~ 269 (561)
T PTZ00058 238 KRIGIAGSGYIAVELINVVNRL-GAESYIFARG 269 (561)
T ss_pred CEEEEECCcHHHHHHHHHHHHc-CCcEEEEEec
Confidence 3699999999999999999998 9999999975
No 310
>KOG2403|consensus
Probab=95.02 E-value=0.034 Score=59.54 Aligned_cols=34 Identities=35% Similarity=0.559 Sum_probs=31.2
Q ss_pred CCcccEEEECCChhHHHHHHHHHhcCCCeEEEEec
Q psy1042 115 DMTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEA 149 (567)
Q Consensus 115 ~~~yDvIVVGsG~aG~~aA~~Lae~~G~~VlVLE~ 149 (567)
+..||.+|||+|.+|+-+|..|+|. |.+|.++-+
T Consensus 53 ~~~~da~vvgaggAGlr~~~~lae~-g~~~a~itk 86 (642)
T KOG2403|consen 53 DHTYDAVVVGAGGAGLRAARGLAEL-GEKTAVITK 86 (642)
T ss_pred eeeceeEEEeccchhhhhhhhhhhc-CceEEEEec
Confidence 3459999999999999999999999 999999976
No 311
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=94.83 E-value=0.029 Score=60.29 Aligned_cols=36 Identities=17% Similarity=0.378 Sum_probs=31.7
Q ss_pred cccEEEECCChhHHHHHHHHHhcCCCeEEEEecCCCC
Q psy1042 117 TFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIEE 153 (567)
Q Consensus 117 ~yDvIVVGsG~aG~~aA~~Lae~~G~~VlVLE~G~~~ 153 (567)
..+|||||||.||+.+|.+|... +.+|+|||+.+..
T Consensus 10 ~~~vVIvGgG~aGl~~a~~L~~~-~~~ItlI~~~~~~ 45 (424)
T PTZ00318 10 KPNVVVLGTGWAGAYFVRNLDPK-KYNITVISPRNHM 45 (424)
T ss_pred CCeEEEECCCHHHHHHHHHhCcC-CCeEEEEcCCCCc
Confidence 46899999999999999999876 8999999987654
No 312
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=94.79 E-value=0.03 Score=60.32 Aligned_cols=37 Identities=30% Similarity=0.295 Sum_probs=33.6
Q ss_pred ccEEEECCChhHHHHHHHHHhcCCCeEEEEecCCCCCC
Q psy1042 118 FDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIEEPF 155 (567)
Q Consensus 118 yDvIVVGsG~aG~~aA~~Lae~~G~~VlVLE~G~~~~~ 155 (567)
-.|.|||||++|+++|..|+.. |+.|+|.|+-+....
T Consensus 124 ~~VaviGaGPAGl~~a~~L~~~-G~~Vtv~e~~~~~GG 160 (457)
T COG0493 124 KKVAVIGAGPAGLAAADDLSRA-GHDVTVFERVALDGG 160 (457)
T ss_pred CEEEEECCCchHhhhHHHHHhC-CCeEEEeCCcCCCce
Confidence 5799999999999999999999 999999999776543
No 313
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=94.62 E-value=0.12 Score=54.23 Aligned_cols=111 Identities=9% Similarity=-0.067 Sum_probs=67.6
Q ss_pred HHHHHHHHhcCCCCCCCCCCCceeeeeeccccCCCcccchhHHhhHHHHhcCCCeEEecceEEEEEEeCCCCCCCCccEE
Q psy1042 277 PVLIKAWKEKGYPERDLNAENQIGVMHLQTTTRHGERLSTNGAFIRPIRKKRKNLTILTEAHVTRIICDKTPNKHKKLVA 356 (567)
Q Consensus 277 ~~~~~~~~~~G~~~~~~~~~~~~g~~~~~~~~~~g~r~s~~~~~L~~a~~~~~gv~I~~~t~V~~I~~d~~~~~~~~~rv 356 (567)
..+++.++++|++...... | ..+|.. .+.......|...++ +.|++|+++++|+.| + ++ .
T Consensus 57 ~d~~~fF~~~Gi~~~~e~~----g-rvfP~S----~~A~sVv~~L~~~l~-~~gV~i~~~~~V~~i--~--~~-----~- 116 (376)
T TIGR03862 57 VALQDWARGLGIETFVGSS----G-RVFPVE----MKAAPLLRAWLKRLA-EQGVQFHTRHRWIGW--Q--GG-----T- 116 (376)
T ss_pred HHHHHHHHHCCCceEECCC----C-EECCCC----CCHHHHHHHHHHHHH-HCCCEEEeCCEEEEE--e--CC-----c-
Confidence 6788888999997642111 1 222221 233344445555666 799999999999999 3 22 2
Q ss_pred EEEEEEeCCEEEEEEcCcEEEEcCCCCccHHHHHhCCCCCcchhhhcCCcccccCC
Q psy1042 357 KSVEFFYKKKLRRARAKKEVISSAGAINSPKILMLSGIGPKDHLTSLNIKTLVDLK 412 (567)
Q Consensus 357 ~GV~~~~~g~~~~v~A~k~VVLAAGa~~Tp~LLl~SGIG~~~~L~~~gI~v~~~lp 412 (567)
.+|.+..++ ..++|+ .||||+|+...|++ =-+|-| -..++++|+.++.-.|
T Consensus 117 ~~v~~~~~~--~~~~a~-~vIlAtGG~s~p~~-Gs~g~g-y~la~~lGh~i~~~~P 167 (376)
T TIGR03862 117 LRFETPDGQ--STIEAD-AVVLALGGASWSQL-GSDGAW-QQVLDQRGVSVAPFAP 167 (376)
T ss_pred EEEEECCCc--eEEecC-EEEEcCCCcccccc-CCCcHH-HHHHHHCCCcccCCcC
Confidence 345543222 258896 69999999888865 111211 2345567877766655
No 314
>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=94.59 E-value=0.029 Score=56.41 Aligned_cols=33 Identities=30% Similarity=0.309 Sum_probs=30.1
Q ss_pred cEEEECCChhHHHHHHHHHhcCCCeEEEEecCCC
Q psy1042 119 DFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIE 152 (567)
Q Consensus 119 DvIVVGsG~aG~~aA~~Lae~~G~~VlVLE~G~~ 152 (567)
-|.|||+|.||+-||+++|+. |..|.|.|--+.
T Consensus 5 ~i~VIGaGLAGSEAAwqiA~~-Gv~V~L~EMRp~ 37 (439)
T COG1206 5 PINVIGAGLAGSEAAWQIAKR-GVPVILYEMRPV 37 (439)
T ss_pred ceEEEcccccccHHHHHHHHc-CCcEEEEEcccc
Confidence 489999999999999999999 999999996543
No 315
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=94.57 E-value=0.29 Score=53.59 Aligned_cols=30 Identities=20% Similarity=0.238 Sum_probs=28.4
Q ss_pred cEEEECCChhHHHHHHHHHhcCCCeEEEEec
Q psy1042 119 DFIIIGAGSAGCVLANRLSEIKKWKVLLLEA 149 (567)
Q Consensus 119 DvIVVGsG~aG~~aA~~Lae~~G~~VlVLE~ 149 (567)
.++|||+|..|+-+|..|++. |.+|.|+++
T Consensus 182 ~vvIIGgG~iG~E~A~~l~~~-G~~Vtli~~ 211 (484)
T TIGR01438 182 KTLVVGASYVALECAGFLAGI-GLDVTVMVR 211 (484)
T ss_pred CEEEECCCHHHHHHHHHHHHh-CCcEEEEEe
Confidence 599999999999999999998 999999985
No 316
>KOG4405|consensus
Probab=94.55 E-value=0.043 Score=56.64 Aligned_cols=41 Identities=27% Similarity=0.248 Sum_probs=37.1
Q ss_pred CCCCcccEEEECCChhHHHHHHHHHhcCCCeEEEEecCCCCC
Q psy1042 113 DDDMTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIEEP 154 (567)
Q Consensus 113 ~~~~~yDvIVVGsG~aG~~aA~~Lae~~G~~VlVLE~G~~~~ 154 (567)
..+.+||+||||.|..=+++|...++. |.+||=|+.....+
T Consensus 4 ~lP~~fDvVViGTGlpESilAAAcSrs-G~sVLHlDsn~yYG 44 (547)
T KOG4405|consen 4 ILPEEFDVVVIGTGLPESILAAACSRS-GSSVLHLDSNEYYG 44 (547)
T ss_pred CCchhccEEEEcCCCcHHHHHHHhhhc-CCceEeccCccccC
Confidence 356789999999999999999999998 99999999987764
No 317
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=94.37 E-value=0.047 Score=57.67 Aligned_cols=35 Identities=23% Similarity=0.317 Sum_probs=30.3
Q ss_pred ccEEEECCChhHHHHHHHHHhc-CCCeEEEEecCCC
Q psy1042 118 FDFIIIGAGSAGCVLANRLSEI-KKWKVLLLEAGIE 152 (567)
Q Consensus 118 yDvIVVGsG~aG~~aA~~Lae~-~G~~VlVLE~G~~ 152 (567)
.|+||||+|+||+.+|.+|.+. +..+|+||++.+.
T Consensus 3 ~~vvIiG~G~AG~~~a~~lr~~~~~~~Itvi~~~~~ 38 (377)
T PRK04965 3 NGIVIIGSGFAARQLVKNIRKQDAHIPITLITADSG 38 (377)
T ss_pred CCEEEECCcHHHHHHHHHHHhhCcCCCEEEEeCCCC
Confidence 4899999999999999999874 5678999998664
No 318
>KOG1439|consensus
Probab=94.29 E-value=0.026 Score=58.19 Aligned_cols=40 Identities=30% Similarity=0.414 Sum_probs=36.5
Q ss_pred CCCcccEEEECCChhHHHHHHHHHhcCCCeEEEEecCCCCC
Q psy1042 114 DDMTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIEEP 154 (567)
Q Consensus 114 ~~~~yDvIVVGsG~aG~~aA~~Lae~~G~~VlVLE~G~~~~ 154 (567)
|+++|||||+|.|..=|..+..|+.+ |.+||.++|.+..+
T Consensus 1 mdeeyDvivlGTgl~ecilS~~Ls~~-gkkVLhiDrN~yYG 40 (440)
T KOG1439|consen 1 MDEEYDVIVLGTGLTECILSGALSVD-GKKVLHIDRNDYYG 40 (440)
T ss_pred CCCceeEEEEcCCchhheeeeeeeec-CcEEEEEeCCCCCC
Confidence 34669999999999999999999999 99999999998774
No 319
>KOG2755|consensus
Probab=94.04 E-value=0.04 Score=53.74 Aligned_cols=33 Identities=33% Similarity=0.586 Sum_probs=29.7
Q ss_pred EEEECCChhHHHHHHHHHhc-CCCeEEEEecCCC
Q psy1042 120 FIIIGAGSAGCVLANRLSEI-KKWKVLLLEAGIE 152 (567)
Q Consensus 120 vIVVGsG~aG~~aA~~Lae~-~G~~VlVLE~G~~ 152 (567)
+||||||+||.++|..||.. |...||||-+.+.
T Consensus 2 fivvgggiagvscaeqla~~~psa~illitass~ 35 (334)
T KOG2755|consen 2 FIVVGGGIAGVSCAEQLAQLEPSAEILLITASSF 35 (334)
T ss_pred eEEEcCccccccHHHHHHhhCCCCcEEEEeccHH
Confidence 79999999999999999985 7889999987654
No 320
>COG5044 MRS6 RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=93.99 E-value=0.078 Score=54.23 Aligned_cols=38 Identities=26% Similarity=0.274 Sum_probs=35.3
Q ss_pred CcccEEEECCChhHHHHHHHHHhcCCCeEEEEecCCCCC
Q psy1042 116 MTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIEEP 154 (567)
Q Consensus 116 ~~yDvIVVGsG~aG~~aA~~Lae~~G~~VlVLE~G~~~~ 154 (567)
..|||||+|.|..=|+.+..|+-+ |.+||+|++.+..+
T Consensus 5 ~~yDvii~GTgl~esils~~Ls~~-~k~VlhiD~Nd~YG 42 (434)
T COG5044 5 TLYDVIILGTGLRESILSAALSWD-GKNVLHIDKNDYYG 42 (434)
T ss_pred ccccEEEecccHHHHHHHHHhhhc-CceEEEEeCCCccC
Confidence 369999999999999999999999 99999999998764
No 321
>KOG1800|consensus
Probab=93.98 E-value=0.069 Score=54.85 Aligned_cols=36 Identities=25% Similarity=0.206 Sum_probs=32.4
Q ss_pred ccEEEECCChhHHHHHHHHHhc-CCCeEEEEecCCCC
Q psy1042 118 FDFIIIGAGSAGCVLANRLSEI-KKWKVLLLEAGIEE 153 (567)
Q Consensus 118 yDvIVVGsG~aG~~aA~~Lae~-~G~~VlVLE~G~~~ 153 (567)
.-|+|||||+||.-+|..|.++ ++.+|.|+|+-+..
T Consensus 21 p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvP 57 (468)
T KOG1800|consen 21 PRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVP 57 (468)
T ss_pred ceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCcc
Confidence 4799999999999999999984 78999999998765
No 322
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=93.95 E-value=0.056 Score=56.70 Aligned_cols=35 Identities=17% Similarity=0.345 Sum_probs=29.8
Q ss_pred cEEEECCChhHHHHHHHHHhc--CCCeEEEEecCCCC
Q psy1042 119 DFIIIGAGSAGCVLANRLSEI--KKWKVLLLEAGIEE 153 (567)
Q Consensus 119 DvIVVGsG~aG~~aA~~Lae~--~G~~VlVLE~G~~~ 153 (567)
.|||||||+||+.+|.+|.++ ++.+|+|||+....
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~~ 37 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTT 37 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCCC
Confidence 389999999999999999642 47899999988664
No 323
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=93.91 E-value=1.5 Score=45.73 Aligned_cols=37 Identities=14% Similarity=0.113 Sum_probs=28.9
Q ss_pred CcccEEEECCChhHHHHHHHHHhc-CCCeEEEEecCCC
Q psy1042 116 MTFDFIIIGAGSAGCVLANRLSEI-KKWKVLLLEAGIE 152 (567)
Q Consensus 116 ~~yDvIVVGsG~aG~~aA~~Lae~-~G~~VlVLE~G~~ 152 (567)
....|+|||||-.++-++..|.+. +..+|.+|=|+..
T Consensus 189 ~~~~V~VVGgGQSAAEi~~~L~~~~~~~~V~~i~R~~~ 226 (341)
T PF13434_consen 189 AGKRVAVVGGGQSAAEIFLDLLRRGPEAKVTWISRSPG 226 (341)
T ss_dssp --EEEEEE-SSHHHHHHHHHHHHH-TTEEEEEEESSSS
T ss_pred CCCeEEEECCcHhHHHHHHHHHhCCCCcEEEEEECCCc
Confidence 457899999999999999999997 2258999988754
No 324
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=93.65 E-value=0.073 Score=48.72 Aligned_cols=32 Identities=22% Similarity=0.376 Sum_probs=27.5
Q ss_pred EEECCChhHHHHHHHHHhc----CCCeEEEEecCCC
Q psy1042 121 IIIGAGSAGCVLANRLSEI----KKWKVLLLEAGIE 152 (567)
Q Consensus 121 IVVGsG~aG~~aA~~Lae~----~G~~VlVLE~G~~ 152 (567)
+|||+|++|++++.+|.+. ...+|.|+|+.+.
T Consensus 1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~~ 36 (156)
T PF13454_consen 1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSPF 36 (156)
T ss_pred CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCCc
Confidence 4999999999999999987 2679999998543
No 325
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=93.46 E-value=0.1 Score=47.27 Aligned_cols=31 Identities=35% Similarity=0.569 Sum_probs=29.1
Q ss_pred EEEECCChhHHHHHHHHHhcCCCeEEEEecCC
Q psy1042 120 FIIIGAGSAGCVLANRLSEIKKWKVLLLEAGI 151 (567)
Q Consensus 120 vIVVGsG~aG~~aA~~Lae~~G~~VlVLE~G~ 151 (567)
++|||+|..|+..|.+|+++ |.+|.++-+..
T Consensus 1 I~I~G~GaiG~~~a~~L~~~-g~~V~l~~r~~ 31 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQA-GHDVTLVSRSP 31 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHT-TCEEEEEESHH
T ss_pred CEEECcCHHHHHHHHHHHHC-CCceEEEEccc
Confidence 58999999999999999997 99999999875
No 326
>KOG3851|consensus
Probab=93.46 E-value=0.073 Score=53.38 Aligned_cols=38 Identities=21% Similarity=0.372 Sum_probs=31.9
Q ss_pred CCcccEEEECCChhHHHHHHHHHhc-CCCeEEEEecCCC
Q psy1042 115 DMTFDFIIIGAGSAGCVLANRLSEI-KKWKVLLLEAGIE 152 (567)
Q Consensus 115 ~~~yDvIVVGsG~aG~~aA~~Lae~-~G~~VlVLE~G~~ 152 (567)
...|.|+|||||.+|+.+|.++.++ +.-+|.|||-..+
T Consensus 37 ~~h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~e~ 75 (446)
T KOG3851|consen 37 RKHFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPAED 75 (446)
T ss_pred ccceEEEEEcCCcchhHHHHHHHhhcCCCceEEecchhh
Confidence 3678999999999999999999996 4458999995543
No 327
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=93.42 E-value=0.09 Score=55.62 Aligned_cols=35 Identities=31% Similarity=0.356 Sum_probs=32.3
Q ss_pred ccEEEECCChhHHHHHHHHHhcCCCeEEEEecCCCC
Q psy1042 118 FDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIEE 153 (567)
Q Consensus 118 yDvIVVGsG~aG~~aA~~Lae~~G~~VlVLE~G~~~ 153 (567)
-+++|||+|..|+.+|..|++. |++|+|+|+.+..
T Consensus 137 ~~v~vvG~G~~gle~A~~~~~~-G~~v~l~e~~~~~ 171 (415)
T COG0446 137 KDVVVVGAGPIGLEAAEAAAKR-GKKVTLIEAADRL 171 (415)
T ss_pred CeEEEECCcHHHHHHHHHHHHc-CCeEEEEEccccc
Confidence 5899999999999999999999 9999999987653
No 328
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=93.31 E-value=0.98 Score=49.20 Aligned_cols=31 Identities=10% Similarity=0.106 Sum_probs=27.9
Q ss_pred cEEEECCChhHHHHHHHHHhcCCC-eEEEEecC
Q psy1042 119 DFIIIGAGSAGCVLANRLSEIKKW-KVLLLEAG 150 (567)
Q Consensus 119 DvIVVGsG~aG~~aA~~Lae~~G~-~VlVLE~G 150 (567)
.++|||+|..|+-+|..+.+. |. +|.|+++.
T Consensus 284 ~VvVIGgG~~a~d~A~~a~~~-Ga~~Vtvv~r~ 315 (467)
T TIGR01318 284 RVVVLGGGDTAMDCVRTAIRL-GAASVTCAYRR 315 (467)
T ss_pred EEEEECCcHHHHHHHHHHHHc-CCCeEEEEEec
Confidence 699999999999999999988 85 79999964
No 329
>KOG0399|consensus
Probab=93.11 E-value=0.1 Score=60.09 Aligned_cols=39 Identities=26% Similarity=0.262 Sum_probs=35.0
Q ss_pred cccEEEECCChhHHHHHHHHHhcCCCeEEEEecCCCCCCc
Q psy1042 117 TFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIEEPFF 156 (567)
Q Consensus 117 ~yDvIVVGsG~aG~~aA~~Lae~~G~~VlVLE~G~~~~~~ 156 (567)
-.-|.|||||++|++||..|-+. |+.|+|.||..+.+..
T Consensus 1785 g~~vaiigsgpaglaaadqlnk~-gh~v~vyer~dr~ggl 1823 (2142)
T KOG0399|consen 1785 GKRVAIIGSGPAGLAAADQLNKA-GHTVTVYERSDRVGGL 1823 (2142)
T ss_pred CcEEEEEccCchhhhHHHHHhhc-CcEEEEEEecCCcCce
Confidence 35799999999999999999999 9999999998877543
No 330
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=93.06 E-value=0.97 Score=51.48 Aligned_cols=31 Identities=10% Similarity=0.084 Sum_probs=27.3
Q ss_pred cEEEECCChhHHHHHHHHHhcCCC-eEEEEecC
Q psy1042 119 DFIIIGAGSAGCVLANRLSEIKKW-KVLLLEAG 150 (567)
Q Consensus 119 DvIVVGsG~aG~~aA~~Lae~~G~-~VlVLE~G 150 (567)
.|||||+|..|+-+|..+.+. |. +|.++++.
T Consensus 470 ~VvVIGgG~~a~d~A~~a~r~-ga~~Vt~i~~~ 501 (654)
T PRK12769 470 NVVVLGGGDTAMDCVRTALRH-GASNVTCAYRR 501 (654)
T ss_pred eEEEECCcHHHHHHHHHHHHc-CCCeEEEeEec
Confidence 699999999999999998888 76 69998864
No 331
>KOG1336|consensus
Probab=92.70 E-value=0.83 Score=48.59 Aligned_cols=54 Identities=13% Similarity=0.116 Sum_probs=44.1
Q ss_pred CCCeEEecceEEEEEEeCCCCCCCCccEEEEEEEEeCCEEEEEEcCcEEEEcCCCCccHHHHHh
Q psy1042 328 RKNLTILTEAHVTRIICDKTPNKHKKLVAKSVEFFYKKKLRRARAKKEVISSAGAINSPKILML 391 (567)
Q Consensus 328 ~~gv~I~~~t~V~~I~~d~~~~~~~~~rv~GV~~~~~g~~~~v~A~k~VVLAAGa~~Tp~LLl~ 391 (567)
+.++++..++.+..+..+++ + +++-|.+.++ .++.|+ -||++.|+--...++..
T Consensus 267 ~kgVk~~~~t~~s~l~~~~~-G-----ev~~V~l~dg---~~l~ad-lvv~GiG~~p~t~~~~~ 320 (478)
T KOG1336|consen 267 NKGVKFYLGTVVSSLEGNSD-G-----EVSEVKLKDG---KTLEAD-LVVVGIGIKPNTSFLEK 320 (478)
T ss_pred hcCeEEEEecceeecccCCC-C-----cEEEEEeccC---CEeccC-eEEEeeccccccccccc
Confidence 58999999999999988764 4 7888888776 478997 79999998777777665
No 332
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=92.66 E-value=0.13 Score=47.12 Aligned_cols=31 Identities=32% Similarity=0.388 Sum_probs=28.9
Q ss_pred EEEECCChhHHHHHHHHHhcCCCeEEEEecCC
Q psy1042 120 FIIIGAGSAGCVLANRLSEIKKWKVLLLEAGI 151 (567)
Q Consensus 120 vIVVGsG~aG~~aA~~Lae~~G~~VlVLE~G~ 151 (567)
+.|||+|..|.++|..|+++ |.+|.|..+..
T Consensus 2 I~ViGaG~~G~AlA~~la~~-g~~V~l~~~~~ 32 (157)
T PF01210_consen 2 IAVIGAGNWGTALAALLADN-GHEVTLWGRDE 32 (157)
T ss_dssp EEEESSSHHHHHHHHHHHHC-TEEEEEETSCH
T ss_pred EEEECcCHHHHHHHHHHHHc-CCEEEEEeccH
Confidence 68999999999999999999 99999998754
No 333
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=92.60 E-value=0.14 Score=49.96 Aligned_cols=33 Identities=42% Similarity=0.591 Sum_probs=30.4
Q ss_pred cEEEECCChhHHHHHHHHHhcCCCeEEEEecCCC
Q psy1042 119 DFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIE 152 (567)
Q Consensus 119 DvIVVGsG~aG~~aA~~Lae~~G~~VlVLE~G~~ 152 (567)
.+||||+|-.|..+|..|++. |..|+++|+.+.
T Consensus 2 ~iiIiG~G~vG~~va~~L~~~-g~~Vv~Id~d~~ 34 (225)
T COG0569 2 KIIIIGAGRVGRSVARELSEE-GHNVVLIDRDEE 34 (225)
T ss_pred EEEEECCcHHHHHHHHHHHhC-CCceEEEEcCHH
Confidence 589999999999999999999 999999997643
No 334
>KOG0404|consensus
Probab=92.36 E-value=0.13 Score=49.17 Aligned_cols=32 Identities=31% Similarity=0.360 Sum_probs=29.4
Q ss_pred ccEEEECCChhHHHHHHHHHhcCCCeEEEEecC
Q psy1042 118 FDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAG 150 (567)
Q Consensus 118 yDvIVVGsG~aG~~aA~~Lae~~G~~VlVLE~G 150 (567)
-.|+|||||+++-++|++++++ .++-+|+|-.
T Consensus 9 e~v~IiGSGPAa~tAAiYaara-elkPllfEG~ 40 (322)
T KOG0404|consen 9 ENVVIIGSGPAAHTAAIYAARA-ELKPLLFEGM 40 (322)
T ss_pred eeEEEEccCchHHHHHHHHhhc-ccCceEEeee
Confidence 3699999999999999999999 9999999953
No 335
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=91.92 E-value=0.21 Score=46.93 Aligned_cols=31 Identities=26% Similarity=0.426 Sum_probs=26.9
Q ss_pred EEEECCChhHHHHHHHHHhcCCCeEEEEecCC
Q psy1042 120 FIIIGAGSAGCVLANRLSEIKKWKVLLLEAGI 151 (567)
Q Consensus 120 vIVVGsG~aG~~aA~~Lae~~G~~VlVLE~G~ 151 (567)
|.|||+|..|...|..++.+ |++|.|+|..+
T Consensus 2 V~ViGaG~mG~~iA~~~a~~-G~~V~l~d~~~ 32 (180)
T PF02737_consen 2 VAVIGAGTMGRGIAALFARA-GYEVTLYDRSP 32 (180)
T ss_dssp EEEES-SHHHHHHHHHHHHT-TSEEEEE-SSH
T ss_pred EEEEcCCHHHHHHHHHHHhC-CCcEEEEECCh
Confidence 68999999999999999999 99999999754
No 336
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=91.50 E-value=0.22 Score=47.01 Aligned_cols=32 Identities=31% Similarity=0.407 Sum_probs=25.8
Q ss_pred EEEECCChhHHHHHHHHHhcCCCeEEEEecCCC
Q psy1042 120 FIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIE 152 (567)
Q Consensus 120 vIVVGsG~aG~~aA~~Lae~~G~~VlVLE~G~~ 152 (567)
|.|||.|..|+++|..||++ |++|+.+|....
T Consensus 3 I~ViGlGyvGl~~A~~lA~~-G~~V~g~D~~~~ 34 (185)
T PF03721_consen 3 IAVIGLGYVGLPLAAALAEK-GHQVIGVDIDEE 34 (185)
T ss_dssp EEEE--STTHHHHHHHHHHT-TSEEEEE-S-HH
T ss_pred EEEECCCcchHHHHHHHHhC-CCEEEEEeCChH
Confidence 78999999999999999999 999999997543
No 337
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=91.50 E-value=1.7 Score=49.44 Aligned_cols=31 Identities=19% Similarity=0.257 Sum_probs=27.7
Q ss_pred cEEEECCChhHHHHHHHHHhcCCC-eEEEEecC
Q psy1042 119 DFIIIGAGSAGCVLANRLSEIKKW-KVLLLEAG 150 (567)
Q Consensus 119 DvIVVGsG~aG~~aA~~Lae~~G~-~VlVLE~G 150 (567)
.|||||+|..|+-+|..|.+. |. +|.|+++.
T Consensus 325 ~VvVIGgG~~a~e~A~~l~~~-Ga~~Vtlv~r~ 356 (652)
T PRK12814 325 KVVVIGGGNTAIDAARTALRL-GAESVTILYRR 356 (652)
T ss_pred eEEEECCCHHHHHHHHHHHHc-CCCeEEEeeec
Confidence 699999999999999999988 75 69999864
No 338
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=91.44 E-value=0.24 Score=53.42 Aligned_cols=33 Identities=30% Similarity=0.406 Sum_probs=30.6
Q ss_pred cEEEECCChhHHHHHHHHHhcCCCeEEEEecCCC
Q psy1042 119 DFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIE 152 (567)
Q Consensus 119 DvIVVGsG~aG~~aA~~Lae~~G~~VlVLE~G~~ 152 (567)
.++|||+|.+|+-+|..|++. |.+|.|+|+++.
T Consensus 159 ~vvIIGgG~~g~e~A~~l~~~-g~~Vtli~~~~~ 191 (438)
T PRK07251 159 RLGIIGGGNIGLEFAGLYNKL-GSKVTVLDAAST 191 (438)
T ss_pred eEEEECCCHHHHHHHHHHHHc-CCeEEEEecCCc
Confidence 699999999999999999998 999999998754
No 339
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=91.34 E-value=0.41 Score=52.52 Aligned_cols=36 Identities=39% Similarity=0.492 Sum_probs=33.9
Q ss_pred ccEEEECCChhHHHHHHHHHhcCCCeEEEEecCCCCC
Q psy1042 118 FDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIEEP 154 (567)
Q Consensus 118 yDvIVVGsG~aG~~aA~~Lae~~G~~VlVLE~G~~~~ 154 (567)
|||||||||.+|+++|..||++ |++|+||||....+
T Consensus 1 ~dvvViGaG~~Gl~aA~~La~~-G~~V~vlE~~~~~G 36 (493)
T TIGR02730 1 YDAIVIGSGIGGLVTATQLAVK-GAKVLVLERYLIPG 36 (493)
T ss_pred CcEEEECCcHHHHHHHHHHHHC-CCcEEEEECCCCCC
Confidence 7999999999999999999999 99999999987764
No 340
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=90.78 E-value=0.28 Score=50.26 Aligned_cols=32 Identities=34% Similarity=0.444 Sum_probs=30.0
Q ss_pred cEEEECCChhHHHHHHHHHhcCCCeEEEEecCC
Q psy1042 119 DFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGI 151 (567)
Q Consensus 119 DvIVVGsG~aG~~aA~~Lae~~G~~VlVLE~G~ 151 (567)
.+.|||+|+.|+..|.+|+++ |.+|.++.|+.
T Consensus 4 ~I~IiGaGaiG~~~a~~L~~~-G~~V~lv~r~~ 35 (305)
T PRK05708 4 TWHILGAGSLGSLWACRLARA-GLPVRLILRDR 35 (305)
T ss_pred eEEEECCCHHHHHHHHHHHhC-CCCeEEEEech
Confidence 599999999999999999998 99999999874
No 341
>PRK07846 mycothione reductase; Reviewed
Probab=90.57 E-value=0.33 Score=52.61 Aligned_cols=34 Identities=18% Similarity=0.295 Sum_probs=31.1
Q ss_pred ccEEEECCChhHHHHHHHHHhcCCCeEEEEecCCC
Q psy1042 118 FDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIE 152 (567)
Q Consensus 118 yDvIVVGsG~aG~~aA~~Lae~~G~~VlVLE~G~~ 152 (567)
-.++|||+|..|+-+|..|++. |.+|.|||+++.
T Consensus 167 ~~vvIIGgG~iG~E~A~~l~~~-G~~Vtli~~~~~ 200 (451)
T PRK07846 167 ESLVIVGGGFIAAEFAHVFSAL-GVRVTVVNRSGR 200 (451)
T ss_pred CeEEEECCCHHHHHHHHHHHHc-CCeEEEEEcCCc
Confidence 3799999999999999999998 999999998753
No 342
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=90.51 E-value=0.32 Score=53.04 Aligned_cols=33 Identities=15% Similarity=0.250 Sum_probs=30.8
Q ss_pred cEEEECCChhHHHHHHHHHhcCCCeEEEEecCCC
Q psy1042 119 DFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIE 152 (567)
Q Consensus 119 DvIVVGsG~aG~~aA~~Lae~~G~~VlVLE~G~~ 152 (567)
.++|||+|..|+-+|..|++. |.+|.|||+++.
T Consensus 176 ~vvIiGgG~iG~E~A~~l~~~-G~~Vtlv~~~~~ 208 (471)
T PRK06467 176 RLLVMGGGIIGLEMGTVYHRL-GSEVDVVEMFDQ 208 (471)
T ss_pred eEEEECCCHHHHHHHHHHHHc-CCCEEEEecCCC
Confidence 799999999999999999998 999999998754
No 343
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=90.48 E-value=0.25 Score=52.09 Aligned_cols=28 Identities=29% Similarity=0.181 Sum_probs=25.4
Q ss_pred hhHHHHHHHHHhcCCCeEEEEecCCCCCC
Q psy1042 127 SAGCVLANRLSEIKKWKVLLLEAGIEEPF 155 (567)
Q Consensus 127 ~aG~~aA~~Lae~~G~~VlVLE~G~~~~~ 155 (567)
+||++||++|+++ |++|+|||+.+..++
T Consensus 1 iaGL~aA~~L~~~-G~~v~vlEa~~r~GG 28 (450)
T PF01593_consen 1 IAGLAAAYYLAKA-GYDVTVLEASDRVGG 28 (450)
T ss_dssp HHHHHHHHHHHHT-TTEEEEEESSSSSBT
T ss_pred ChHHHHHHHHHhC-CCCEEEEEcCCCCCc
Confidence 5899999999999 999999999988753
No 344
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=90.41 E-value=0.33 Score=52.57 Aligned_cols=33 Identities=24% Similarity=0.262 Sum_probs=30.8
Q ss_pred cEEEECCChhHHHHHHHHHhcCCCeEEEEecCCC
Q psy1042 119 DFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIE 152 (567)
Q Consensus 119 DvIVVGsG~aG~~aA~~Lae~~G~~VlVLE~G~~ 152 (567)
.++|||+|..|+-+|..|++. |.+|.|||+++.
T Consensus 168 ~vvIIGgG~iG~E~A~~l~~~-g~~Vtli~~~~~ 200 (450)
T TIGR01421 168 RVVIVGAGYIAVELAGVLHGL-GSETHLVIRHER 200 (450)
T ss_pred eEEEECCCHHHHHHHHHHHHc-CCcEEEEecCCC
Confidence 699999999999999999998 999999998754
No 345
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=90.33 E-value=0.34 Score=45.90 Aligned_cols=34 Identities=18% Similarity=0.253 Sum_probs=28.1
Q ss_pred ccEEEECCChhHHHHHHHHHhcCCCeEEEEecCCC
Q psy1042 118 FDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIE 152 (567)
Q Consensus 118 yDvIVVGsG~aG~~aA~~Lae~~G~~VlVLE~G~~ 152 (567)
-.|+|||+|.++.-+|..|++. |.+|.++=|.+.
T Consensus 168 k~V~VVG~G~SA~d~a~~l~~~-g~~V~~~~R~~~ 201 (203)
T PF13738_consen 168 KRVVVVGGGNSAVDIAYALAKA-GKSVTLVTRSPI 201 (203)
T ss_dssp SEEEEE--SHHHHHHHHHHTTT-CSEEEEEESS--
T ss_pred CcEEEEcChHHHHHHHHHHHhh-CCEEEEEecCCC
Confidence 4799999999999999999999 999999988653
No 346
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=90.30 E-value=0.29 Score=56.87 Aligned_cols=34 Identities=12% Similarity=0.366 Sum_probs=29.5
Q ss_pred EEEECCChhHHHHHHHHHhc--CCCeEEEEecCCCC
Q psy1042 120 FIIIGAGSAGCVLANRLSEI--KKWKVLLLEAGIEE 153 (567)
Q Consensus 120 vIVVGsG~aG~~aA~~Lae~--~G~~VlVLE~G~~~ 153 (567)
+||||+|+||+.+|.+|.+. .+++|+|||+.+..
T Consensus 1 iVIIG~G~AG~~aa~~l~~~~~~~~~Itvi~~e~~~ 36 (785)
T TIGR02374 1 LVLVGNGMAGHRCIEEVLKLNRHMFEITIFGEEPHP 36 (785)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCCeEEEEeCCCCC
Confidence 68999999999999998774 36799999998765
No 347
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=90.17 E-value=0.37 Score=49.55 Aligned_cols=32 Identities=25% Similarity=0.313 Sum_probs=29.9
Q ss_pred cEEEECCChhHHHHHHHHHhcCCCeEEEEecCC
Q psy1042 119 DFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGI 151 (567)
Q Consensus 119 DvIVVGsG~aG~~aA~~Lae~~G~~VlVLE~G~ 151 (567)
.+.|||+|..|+..|.+|+++ |.+|.++-|+.
T Consensus 7 ~I~IiG~GaiG~~lA~~L~~~-g~~V~~~~r~~ 38 (313)
T PRK06249 7 RIGIIGTGAIGGFYGAMLARA-GFDVHFLLRSD 38 (313)
T ss_pred EEEEECCCHHHHHHHHHHHHC-CCeEEEEEeCC
Confidence 599999999999999999998 99999999864
No 348
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=90.05 E-value=0.37 Score=56.28 Aligned_cols=35 Identities=17% Similarity=0.283 Sum_probs=30.6
Q ss_pred cEEEECCChhHHHHHHHHHhc---CCCeEEEEecCCCC
Q psy1042 119 DFIIIGAGSAGCVLANRLSEI---KKWKVLLLEAGIEE 153 (567)
Q Consensus 119 DvIVVGsG~aG~~aA~~Lae~---~G~~VlVLE~G~~~ 153 (567)
.+||||+|++|+.+|.+|.+. .+++|+||++.+..
T Consensus 5 kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~~~ 42 (847)
T PRK14989 5 RLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEPRI 42 (847)
T ss_pred cEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCCCC
Confidence 699999999999999999763 36899999998765
No 349
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=90.02 E-value=0.44 Score=51.42 Aligned_cols=34 Identities=26% Similarity=0.433 Sum_probs=31.9
Q ss_pred cEEEECCChhHHHHHHHHHhcCCCeEEEEecCCCC
Q psy1042 119 DFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIEE 153 (567)
Q Consensus 119 DvIVVGsG~aG~~aA~~Lae~~G~~VlVLE~G~~~ 153 (567)
-++|||||..|+-.|.-+++- |.+|.|||+++..
T Consensus 175 ~lvIiGgG~IGlE~a~~~~~L-G~~VTiie~~~~i 208 (454)
T COG1249 175 SLVIVGGGYIGLEFASVFAAL-GSKVTVVERGDRI 208 (454)
T ss_pred EEEEECCCHHHHHHHHHHHHc-CCcEEEEecCCCC
Confidence 599999999999999999998 9999999998764
No 350
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=90.01 E-value=0.37 Score=52.67 Aligned_cols=32 Identities=25% Similarity=0.451 Sum_probs=29.7
Q ss_pred cEEEECCChhHHHHHHHHHhcCCCeEEEEecCC
Q psy1042 119 DFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGI 151 (567)
Q Consensus 119 DvIVVGsG~aG~~aA~~Lae~~G~~VlVLE~G~ 151 (567)
.++|||+|.+|+.+|..|++. |.+|.++|+.+
T Consensus 18 ~v~viG~G~~G~~~A~~L~~~-G~~V~~~d~~~ 49 (480)
T PRK01438 18 RVVVAGLGVSGFAAADALLEL-GARVTVVDDGD 49 (480)
T ss_pred EEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCc
Confidence 599999999999999999998 99999999764
No 351
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=89.84 E-value=0.41 Score=51.09 Aligned_cols=36 Identities=25% Similarity=0.321 Sum_probs=29.9
Q ss_pred ccEEEECCChhHHHHHHHHHhc--CCCeEEEEecCCCC
Q psy1042 118 FDFIIIGAGSAGCVLANRLSEI--KKWKVLLLEAGIEE 153 (567)
Q Consensus 118 yDvIVVGsG~aG~~aA~~Lae~--~G~~VlVLE~G~~~ 153 (567)
++|+|||+|++|..+|.+|.+. +-.+|.|+|.-+..
T Consensus 2 ~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~ 39 (474)
T COG4529 2 FKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNF 39 (474)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCCCCceEEecccccc
Confidence 6899999999999999999984 22249999986654
No 352
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=89.83 E-value=0.69 Score=50.47 Aligned_cols=35 Identities=29% Similarity=0.252 Sum_probs=32.2
Q ss_pred cEEEECCChhHHHHHHHHHhcCCCeEEEEecCCCCC
Q psy1042 119 DFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIEEP 154 (567)
Q Consensus 119 DvIVVGsG~aG~~aA~~Lae~~G~~VlVLE~G~~~~ 154 (567)
+++|||+|++|+++|++|+++ |++|+|+|+.+..+
T Consensus 1 ~v~IiG~G~aGl~aA~~L~~~-G~~v~v~E~~~~~G 35 (474)
T TIGR02732 1 KVAIVGAGLAGLSTAVELVDA-GHEVDIYESRSFIG 35 (474)
T ss_pred CEEEECCCHHHHHHHHHHHHC-CCcEEEEEecCCCC
Confidence 489999999999999999998 99999999987654
No 353
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=89.51 E-value=0.4 Score=49.13 Aligned_cols=32 Identities=31% Similarity=0.324 Sum_probs=29.7
Q ss_pred cEEEECCChhHHHHHHHHHhcCCCeEEEEecCC
Q psy1042 119 DFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGI 151 (567)
Q Consensus 119 DvIVVGsG~aG~~aA~~Lae~~G~~VlVLE~G~ 151 (567)
.|.|||+|..|+..|..|+++ |++|.++++.+
T Consensus 4 ~V~VIG~G~mG~~iA~~la~~-G~~V~v~d~~~ 35 (308)
T PRK06129 4 SVAIIGAGLIGRAWAIVFARA-GHEVRLWDADP 35 (308)
T ss_pred EEEEECccHHHHHHHHHHHHC-CCeeEEEeCCH
Confidence 589999999999999999999 99999999764
No 354
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=89.49 E-value=0.83 Score=50.04 Aligned_cols=60 Identities=20% Similarity=0.145 Sum_probs=43.5
Q ss_pred hHHHHhcCCCeEEecceEEEEEEeCCCCCCCCccEEEEEEEEeC--CEEEEEEcCcEEEEcCCCCccHHHH
Q psy1042 321 IRPIRKKRKNLTILTEAHVTRIICDKTPNKHKKLVAKSVEFFYK--KKLRRARAKKEVISSAGAINSPKIL 389 (567)
Q Consensus 321 L~~a~~~~~gv~I~~~t~V~~I~~d~~~~~~~~~rv~GV~~~~~--g~~~~v~A~k~VVLAAGa~~Tp~LL 389 (567)
|...++ +.|.+|+++++|++|+.+ ++ +++||.+.++ +....+.|+ .||+++....+.+||
T Consensus 238 L~~~~~-~~G~~i~~~~~V~~I~~~--~~-----~~~gv~~~~~~~~~~~~~~ad-~VI~~~~~~~~~~ll 299 (492)
T TIGR02733 238 LVEALK-RDGGNLLTGQRVTAIHTK--GG-----RAGWVVVVDSRKQEDLNVKAD-DVVANLPPQSLLELL 299 (492)
T ss_pred HHHHHH-hcCCEEeCCceEEEEEEe--CC-----eEEEEEEecCCCCceEEEECC-EEEECCCHHHHHHhc
Confidence 444455 579999999999999987 34 7888887653 222468896 699998875555543
No 355
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=89.35 E-value=0.41 Score=51.95 Aligned_cols=32 Identities=25% Similarity=0.425 Sum_probs=29.6
Q ss_pred EEEECCChhHHHHHHHHHhcCCCeEEEEecCCC
Q psy1042 120 FIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIE 152 (567)
Q Consensus 120 vIVVGsG~aG~~aA~~Lae~~G~~VlVLE~G~~ 152 (567)
|+|||.|.+|+++|..|++. |++|++.|+...
T Consensus 3 v~viG~G~sG~s~a~~l~~~-G~~V~~~D~~~~ 34 (459)
T PRK02705 3 AHVIGLGRSGIAAARLLKAQ-GWEVVVSDRNDS 34 (459)
T ss_pred EEEEccCHHHHHHHHHHHHC-CCEEEEECCCCc
Confidence 79999999999999999998 999999998654
No 356
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=89.23 E-value=0.48 Score=51.45 Aligned_cols=34 Identities=32% Similarity=0.480 Sum_probs=31.0
Q ss_pred ccEEEECCChhHHHHHHHHHhcCCCeEEEEecCCC
Q psy1042 118 FDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIE 152 (567)
Q Consensus 118 yDvIVVGsG~aG~~aA~~Lae~~G~~VlVLE~G~~ 152 (567)
-.++|||+|..|+-+|..|++. |.+|.|||+++.
T Consensus 176 ~~v~IiGgG~~g~E~A~~l~~~-g~~Vtli~~~~~ 209 (461)
T PRK05249 176 RSLIIYGAGVIGCEYASIFAAL-GVKVTLINTRDR 209 (461)
T ss_pred CeEEEECCCHHHHHHHHHHHHc-CCeEEEEecCCC
Confidence 3699999999999999999998 999999998753
No 357
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=89.21 E-value=0.44 Score=51.45 Aligned_cols=33 Identities=18% Similarity=0.227 Sum_probs=30.5
Q ss_pred cEEEECCChhHHHHHHHHHhcCCCeEEEEecCCC
Q psy1042 119 DFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIE 152 (567)
Q Consensus 119 DvIVVGsG~aG~~aA~~Lae~~G~~VlVLE~G~~ 152 (567)
.++|||||..|+-+|..|++. |.+|.|+|+++.
T Consensus 150 ~vvViGgG~ig~E~A~~l~~~-g~~Vtli~~~~~ 182 (438)
T PRK13512 150 KALVVGAGYISLEVLENLYER-GLHPTLIHRSDK 182 (438)
T ss_pred EEEEECCCHHHHHHHHHHHhC-CCcEEEEecccc
Confidence 699999999999999999998 999999998653
No 358
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=89.17 E-value=0.44 Score=48.56 Aligned_cols=29 Identities=31% Similarity=0.501 Sum_probs=28.0
Q ss_pred EEEECCChhHHHHHHHHHhcCCCeEEEEec
Q psy1042 120 FIIIGAGSAGCVLANRLSEIKKWKVLLLEA 149 (567)
Q Consensus 120 vIVVGsG~aG~~aA~~Lae~~G~~VlVLE~ 149 (567)
+.|||+|..|+..|..|+++ |.+|.++.+
T Consensus 3 I~IiG~G~iG~~~a~~L~~~-g~~V~~~~r 31 (305)
T PRK12921 3 IAVVGAGAVGGTFGGRLLEA-GRDVTFLVR 31 (305)
T ss_pred EEEECCCHHHHHHHHHHHHC-CCceEEEec
Confidence 78999999999999999998 999999998
No 359
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=88.90 E-value=0.5 Score=48.04 Aligned_cols=30 Identities=27% Similarity=0.465 Sum_probs=28.4
Q ss_pred EEEECCChhHHHHHHHHHhcCCCeEEEEecC
Q psy1042 120 FIIIGAGSAGCVLANRLSEIKKWKVLLLEAG 150 (567)
Q Consensus 120 vIVVGsG~aG~~aA~~Lae~~G~~VlVLE~G 150 (567)
+.|||+|..|+..|..|++. |.+|.++.+.
T Consensus 3 I~IiG~G~~G~~~a~~L~~~-g~~V~~~~r~ 32 (304)
T PRK06522 3 IAILGAGAIGGLFGAALAQA-GHDVTLVARR 32 (304)
T ss_pred EEEECCCHHHHHHHHHHHhC-CCeEEEEECC
Confidence 79999999999999999998 9999999973
No 360
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=88.73 E-value=0.54 Score=51.02 Aligned_cols=34 Identities=32% Similarity=0.454 Sum_probs=31.0
Q ss_pred ccEEEECCChhHHHHHHHHHhcCCCeEEEEecCCC
Q psy1042 118 FDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIE 152 (567)
Q Consensus 118 yDvIVVGsG~aG~~aA~~Lae~~G~~VlVLE~G~~ 152 (567)
-.++|||+|..|+-+|..|++. |.+|.|+|+++.
T Consensus 170 k~v~VIGgG~~g~E~A~~l~~~-g~~Vtli~~~~~ 203 (460)
T PRK06292 170 KSLAVIGGGVIGLELGQALSRL-GVKVTVFERGDR 203 (460)
T ss_pred CeEEEECCCHHHHHHHHHHHHc-CCcEEEEecCCC
Confidence 3699999999999999999998 999999998754
No 361
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=88.57 E-value=0.55 Score=50.94 Aligned_cols=34 Identities=18% Similarity=0.350 Sum_probs=30.8
Q ss_pred ccEEEECCChhHHHHHHHHHhcCCCeEEEEecCCC
Q psy1042 118 FDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIE 152 (567)
Q Consensus 118 yDvIVVGsG~aG~~aA~~Lae~~G~~VlVLE~G~~ 152 (567)
-.++|||+|..|+-+|..|++. |.+|.|||+++.
T Consensus 170 k~vvVIGgG~ig~E~A~~l~~~-G~~Vtli~~~~~ 203 (452)
T TIGR03452 170 ESLVIVGGGYIAAEFAHVFSAL-GTRVTIVNRSTK 203 (452)
T ss_pred CcEEEECCCHHHHHHHHHHHhC-CCcEEEEEccCc
Confidence 3699999999999999999998 999999998643
No 362
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=88.57 E-value=0.37 Score=50.96 Aligned_cols=51 Identities=20% Similarity=0.225 Sum_probs=36.6
Q ss_pred HHhcCCCeEEecceEEEEEEeCCCCCCCCccEEEEEEEEeCCEEEEEEcCcEEEEcCCCCccHHHHHh
Q psy1042 324 IRKKRKNLTILTEAHVTRIICDKTPNKHKKLVAKSVEFFYKKKLRRARAKKEVISSAGAINSPKILML 391 (567)
Q Consensus 324 a~~~~~gv~I~~~t~V~~I~~d~~~~~~~~~rv~GV~~~~~g~~~~v~A~k~VVLAAGa~~Tp~LLl~ 391 (567)
.++ +.|++|++++.|++|.-+ +|.+..+++ +|.++ .||-|||. .-+.++..
T Consensus 218 ~L~-~~GV~v~l~~~Vt~v~~~------------~v~~~~g~~--~I~~~-tvvWaaGv-~a~~~~~~ 268 (405)
T COG1252 218 ALE-KLGVEVLLGTPVTEVTPD------------GVTLKDGEE--EIPAD-TVVWAAGV-RASPLLKD 268 (405)
T ss_pred HHH-HCCCEEEcCCceEEECCC------------cEEEccCCe--eEecC-EEEEcCCC-cCChhhhh
Confidence 344 589999999999999533 466655543 69996 79999995 44555554
No 363
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=88.43 E-value=0.95 Score=49.69 Aligned_cols=35 Identities=31% Similarity=0.322 Sum_probs=32.4
Q ss_pred EEEECCChhHHHHHHHHHhcCCCeEEEEecCCCCCC
Q psy1042 120 FIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIEEPF 155 (567)
Q Consensus 120 vIVVGsG~aG~~aA~~Lae~~G~~VlVLE~G~~~~~ 155 (567)
|||||||.+|++||.+|+++ |++|+||||....++
T Consensus 1 vvVIGaG~~GL~aA~~La~~-G~~V~VlE~~~~~GG 35 (502)
T TIGR02734 1 AVVIGAGFGGLALAIRLAAA-GIPVTVVEQRDKPGG 35 (502)
T ss_pred CEEECcCHHHHHHHHHHHhC-CCcEEEEECCCCCcC
Confidence 69999999999999999999 999999999887643
No 364
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=88.41 E-value=0.59 Score=50.57 Aligned_cols=33 Identities=21% Similarity=0.291 Sum_probs=30.5
Q ss_pred cEEEECCChhHHHHHHHHHhcCCCeEEEEecCCC
Q psy1042 119 DFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIE 152 (567)
Q Consensus 119 DvIVVGsG~aG~~aA~~Lae~~G~~VlVLE~G~~ 152 (567)
.++|||+|..|+-+|..|++. |.+|.|+|+++.
T Consensus 168 ~vvVIGgG~~g~E~A~~l~~~-G~~Vtli~~~~~ 200 (446)
T TIGR01424 168 SILILGGGYIAVEFAGIWRGL-GVQVTLIYRGEL 200 (446)
T ss_pred eEEEECCcHHHHHHHHHHHHc-CCeEEEEEeCCC
Confidence 699999999999999999998 999999998754
No 365
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=88.39 E-value=6.1 Score=47.34 Aligned_cols=30 Identities=17% Similarity=0.179 Sum_probs=25.4
Q ss_pred cEEEECCChhHHHHHHHHHhcCCC-eEEEEec
Q psy1042 119 DFIIIGAGSAGCVLANRLSEIKKW-KVLLLEA 149 (567)
Q Consensus 119 DvIVVGsG~aG~~aA~~Lae~~G~-~VlVLE~ 149 (567)
.|||||||..|+-+|..+.+. |. +|.++.+
T Consensus 573 ~VvVIGgG~tA~D~A~~a~rl-Ga~~Vtiv~r 603 (1006)
T PRK12775 573 SVVVIGAGNTAMDCLRVAKRL-GAPTVRCVYR 603 (1006)
T ss_pred EEEEECCcHHHHHHHHHHHHc-CCCEEEEEee
Confidence 699999999999998888887 77 4777764
No 366
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=88.38 E-value=0.58 Score=47.39 Aligned_cols=32 Identities=19% Similarity=0.276 Sum_probs=29.3
Q ss_pred cEEEECCChhHHHHHHHHHhcCCCeEEEEecCC
Q psy1042 119 DFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGI 151 (567)
Q Consensus 119 DvIVVGsG~aG~~aA~~Lae~~G~~VlVLE~G~ 151 (567)
-|.|||+|..|...|..|+++ |.+|.++++..
T Consensus 5 kIaViGaG~mG~~iA~~la~~-G~~V~l~d~~~ 36 (287)
T PRK08293 5 NVTVAGAGVLGSQIAFQTAFH-GFDVTIYDISD 36 (287)
T ss_pred EEEEECCCHHHHHHHHHHHhc-CCeEEEEeCCH
Confidence 489999999999999999998 99999999653
No 367
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=88.14 E-value=0.78 Score=39.24 Aligned_cols=31 Identities=29% Similarity=0.447 Sum_probs=27.7
Q ss_pred EEEECCChhHHHHHHHHHhcCCCeEEEEecCC
Q psy1042 120 FIIIGAGSAGCVLANRLSEIKKWKVLLLEAGI 151 (567)
Q Consensus 120 vIVVGsG~aG~~aA~~Lae~~G~~VlVLE~G~ 151 (567)
|||||.|..|..+|..|.+. +.+|+++|..+
T Consensus 1 vvI~G~g~~~~~i~~~L~~~-~~~vvvid~d~ 31 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEG-GIDVVVIDRDP 31 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHT-TSEEEEEESSH
T ss_pred eEEEcCCHHHHHHHHHHHhC-CCEEEEEECCc
Confidence 79999999999999999997 88999999764
No 368
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=88.02 E-value=0.61 Score=50.44 Aligned_cols=33 Identities=30% Similarity=0.462 Sum_probs=30.3
Q ss_pred ccEEEECCChhHHHHHHHHHhcCCCeEEEEecCC
Q psy1042 118 FDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGI 151 (567)
Q Consensus 118 yDvIVVGsG~aG~~aA~~Lae~~G~~VlVLE~G~ 151 (567)
-.++|||+|..|+.+|..|++. |++|.++|+..
T Consensus 6 k~v~iiG~g~~G~~~A~~l~~~-G~~V~~~d~~~ 38 (450)
T PRK14106 6 KKVLVVGAGVSGLALAKFLKKL-GAKVILTDEKE 38 (450)
T ss_pred CEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCc
Confidence 3589999999999999999999 99999999864
No 369
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=87.74 E-value=0.63 Score=47.15 Aligned_cols=31 Identities=19% Similarity=0.377 Sum_probs=29.0
Q ss_pred EEEECCChhHHHHHHHHHhcCCCeEEEEecCC
Q psy1042 120 FIIIGAGSAGCVLANRLSEIKKWKVLLLEAGI 151 (567)
Q Consensus 120 vIVVGsG~aG~~aA~~Lae~~G~~VlVLE~G~ 151 (567)
|.|||+|..|..+|..|+++ |++|+++++.+
T Consensus 4 V~VIG~G~mG~~iA~~la~~-G~~V~~~d~~~ 34 (288)
T PRK09260 4 LVVVGAGVMGRGIAYVFAVS-GFQTTLVDIKQ 34 (288)
T ss_pred EEEECccHHHHHHHHHHHhC-CCcEEEEeCCH
Confidence 89999999999999999999 99999999753
No 370
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=87.71 E-value=0.72 Score=44.17 Aligned_cols=31 Identities=16% Similarity=0.245 Sum_probs=28.5
Q ss_pred ccEEEECCChhHHHHHHHHHhcCCCeEEEEec
Q psy1042 118 FDFIIIGAGSAGCVLANRLSEIKKWKVLLLEA 149 (567)
Q Consensus 118 yDvIVVGsG~aG~~aA~~Lae~~G~~VlVLE~ 149 (567)
--++|||+|-.|...|..|.+. |.+|+|+++
T Consensus 11 k~vLVIGgG~va~~ka~~Ll~~-ga~V~VIs~ 41 (202)
T PRK06718 11 KRVVIVGGGKVAGRRAITLLKY-GAHIVVISP 41 (202)
T ss_pred CEEEEECCCHHHHHHHHHHHHC-CCeEEEEcC
Confidence 3699999999999999999998 999999974
No 371
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=87.66 E-value=0.8 Score=40.76 Aligned_cols=32 Identities=25% Similarity=0.402 Sum_probs=28.9
Q ss_pred ccEEEECCChhHHHHHHHHHhcCCCe-EEEEecC
Q psy1042 118 FDFIIIGAGSAGCVLANRLSEIKKWK-VLLLEAG 150 (567)
Q Consensus 118 yDvIVVGsG~aG~~aA~~Lae~~G~~-VlVLE~G 150 (567)
--++|||+|.+|-.++..|++. |.+ |.|+-|-
T Consensus 13 ~~vlviGaGg~ar~v~~~L~~~-g~~~i~i~nRt 45 (135)
T PF01488_consen 13 KRVLVIGAGGAARAVAAALAAL-GAKEITIVNRT 45 (135)
T ss_dssp SEEEEESSSHHHHHHHHHHHHT-TSSEEEEEESS
T ss_pred CEEEEECCHHHHHHHHHHHHHc-CCCEEEEEECC
Confidence 4699999999999999999998 876 9999874
No 372
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=87.50 E-value=0.78 Score=42.05 Aligned_cols=30 Identities=23% Similarity=0.227 Sum_probs=27.7
Q ss_pred ccEEEECCChhHHHHHHHHHhcCCCeEEEEe
Q psy1042 118 FDFIIIGAGSAGCVLANRLSEIKKWKVLLLE 148 (567)
Q Consensus 118 yDvIVVGsG~aG~~aA~~Lae~~G~~VlVLE 148 (567)
--++|||||..|.--|..|.+. |.+|.||.
T Consensus 14 ~~vlVvGGG~va~rka~~Ll~~-ga~V~VIs 43 (157)
T PRK06719 14 KVVVIIGGGKIAYRKASGLKDT-GAFVTVVS 43 (157)
T ss_pred CEEEEECCCHHHHHHHHHHHhC-CCEEEEEc
Confidence 3599999999999999999998 99999994
No 373
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=87.43 E-value=0.72 Score=47.48 Aligned_cols=31 Identities=23% Similarity=0.287 Sum_probs=28.9
Q ss_pred EEEECCChhHHHHHHHHHhcCCCeEEEEecCC
Q psy1042 120 FIIIGAGSAGCVLANRLSEIKKWKVLLLEAGI 151 (567)
Q Consensus 120 vIVVGsG~aG~~aA~~Lae~~G~~VlVLE~G~ 151 (567)
|.|||+|..|...|..++.+ |++|.+.|..+
T Consensus 10 VaVIGaG~MG~giA~~~a~a-G~~V~l~D~~~ 40 (321)
T PRK07066 10 FAAIGSGVIGSGWVARALAH-GLDVVAWDPAP 40 (321)
T ss_pred EEEECcCHHHHHHHHHHHhC-CCeEEEEeCCH
Confidence 88999999999999999998 99999999653
No 374
>PRK06116 glutathione reductase; Validated
Probab=87.38 E-value=0.75 Score=49.76 Aligned_cols=34 Identities=21% Similarity=0.240 Sum_probs=31.0
Q ss_pred ccEEEECCChhHHHHHHHHHhcCCCeEEEEecCCC
Q psy1042 118 FDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIE 152 (567)
Q Consensus 118 yDvIVVGsG~aG~~aA~~Lae~~G~~VlVLE~G~~ 152 (567)
-.++|||+|..|+-+|..|++. |.+|.++++++.
T Consensus 168 ~~vvViGgG~~g~E~A~~l~~~-g~~Vtlv~~~~~ 201 (450)
T PRK06116 168 KRVAVVGAGYIAVEFAGVLNGL-GSETHLFVRGDA 201 (450)
T ss_pred CeEEEECCCHHHHHHHHHHHHc-CCeEEEEecCCC
Confidence 3699999999999999999998 999999998753
No 375
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=87.37 E-value=0.7 Score=49.83 Aligned_cols=34 Identities=21% Similarity=0.264 Sum_probs=31.1
Q ss_pred ccEEEECCChhHHHHHHHHHhcCCCeEEEEecCCC
Q psy1042 118 FDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIE 152 (567)
Q Consensus 118 yDvIVVGsG~aG~~aA~~Lae~~G~~VlVLE~G~~ 152 (567)
-.++|||+|..|+-+|..|++. |.+|.|+|+++.
T Consensus 150 ~~vvVvGgG~~g~e~A~~l~~~-g~~Vtli~~~~~ 183 (444)
T PRK09564 150 KNIVIIGAGFIGLEAVEAAKHL-GKNVRIIQLEDR 183 (444)
T ss_pred CEEEEECCCHHHHHHHHHHHhc-CCcEEEEeCCcc
Confidence 3699999999999999999998 999999998764
No 376
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=87.35 E-value=0.46 Score=40.11 Aligned_cols=32 Identities=22% Similarity=0.280 Sum_probs=28.7
Q ss_pred ccEEEECCChhHHHHHHHHHhcCCCeEEEEecC
Q psy1042 118 FDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAG 150 (567)
Q Consensus 118 yDvIVVGsG~aG~~aA~~Lae~~G~~VlVLE~G 150 (567)
-.++|||+|..|..-+..|.+. |.+|+|+-..
T Consensus 8 ~~vlVvGgG~va~~k~~~Ll~~-gA~v~vis~~ 39 (103)
T PF13241_consen 8 KRVLVVGGGPVAARKARLLLEA-GAKVTVISPE 39 (103)
T ss_dssp -EEEEEEESHHHHHHHHHHCCC-TBEEEEEESS
T ss_pred CEEEEECCCHHHHHHHHHHHhC-CCEEEEECCc
Confidence 4699999999999999999998 9999999853
No 377
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=87.27 E-value=0.73 Score=52.26 Aligned_cols=33 Identities=18% Similarity=0.231 Sum_probs=30.6
Q ss_pred cEEEECCChhHHHHHHHHHhcCCCeEEEEecCCC
Q psy1042 119 DFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIE 152 (567)
Q Consensus 119 DvIVVGsG~aG~~aA~~Lae~~G~~VlVLE~G~~ 152 (567)
.++|||+|..|+-+|..|++. |.+|.|||+++.
T Consensus 314 ~VvIVGgG~iGvE~A~~l~~~-G~eVTLIe~~~~ 346 (659)
T PTZ00153 314 YMGIVGMGIIGLEFMDIYTAL-GSEVVSFEYSPQ 346 (659)
T ss_pred ceEEECCCHHHHHHHHHHHhC-CCeEEEEeccCc
Confidence 699999999999999999998 999999998754
No 378
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=87.10 E-value=1.1 Score=48.40 Aligned_cols=54 Identities=9% Similarity=0.055 Sum_probs=39.1
Q ss_pred hHHHHhcCCCeEEecceEEEEEEeCCCCCCCCccEEEEEEEEeC-C-EEEEEEcCcEEEEcCCC
Q psy1042 321 IRPIRKKRKNLTILTEAHVTRIICDKTPNKHKKLVAKSVEFFYK-K-KLRRARAKKEVISSAGA 382 (567)
Q Consensus 321 L~~a~~~~~gv~I~~~t~V~~I~~d~~~~~~~~~rv~GV~~~~~-g-~~~~v~A~k~VVLAAGa 382 (567)
|...++ +.|.+|.+++.|++|..++ ++ +++||++.++ + +.+++.|+ .||+|+..
T Consensus 219 l~~~l~-~~g~~i~l~~~V~~I~~~~-~~-----~v~~v~~~~~~~~~~~~~~a~-~VI~a~p~ 274 (453)
T TIGR02731 219 IVDYIT-SRGGEVRLNSRLKEIVLNE-DG-----SVKHFVLADGEGQRRFEVTAD-AYVSAMPV 274 (453)
T ss_pred HHHHHH-hcCCEEeCCCeeEEEEECC-CC-----CEEEEEEecCCCCceeEEECC-EEEEcCCH
Confidence 333444 4789999999999998754 34 6889998654 2 22368896 79999975
No 379
>PLN02507 glutathione reductase
Probab=87.03 E-value=0.78 Score=50.41 Aligned_cols=33 Identities=15% Similarity=0.097 Sum_probs=30.5
Q ss_pred cEEEECCChhHHHHHHHHHhcCCCeEEEEecCCC
Q psy1042 119 DFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIE 152 (567)
Q Consensus 119 DvIVVGsG~aG~~aA~~Lae~~G~~VlVLE~G~~ 152 (567)
.++|||+|..|+-+|..|++. |.+|.|+|+++.
T Consensus 205 ~vvVIGgG~ig~E~A~~l~~~-G~~Vtli~~~~~ 237 (499)
T PLN02507 205 RAVVLGGGYIAVEFASIWRGM-GATVDLFFRKEL 237 (499)
T ss_pred eEEEECCcHHHHHHHHHHHHc-CCeEEEEEecCC
Confidence 699999999999999999998 999999998753
No 380
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=86.95 E-value=0.7 Score=51.51 Aligned_cols=34 Identities=26% Similarity=0.235 Sum_probs=31.4
Q ss_pred cEEEECCChhHHHHHHHHHhcCCCeEEEEecCCCC
Q psy1042 119 DFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIEE 153 (567)
Q Consensus 119 DvIVVGsG~aG~~aA~~Lae~~G~~VlVLE~G~~~ 153 (567)
.++|||||..|+-+|..|++. |.+|.|+++++..
T Consensus 145 ~VvVIGgG~~g~E~A~~L~~~-g~~Vtli~~~~~~ 178 (555)
T TIGR03143 145 DVFVIGGGFAAAEEAVFLTRY-ASKVTVIVREPDF 178 (555)
T ss_pred EEEEECCCHHHHHHHHHHHcc-CCEEEEEEeCCcc
Confidence 699999999999999999998 9999999998753
No 381
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=86.93 E-value=0.73 Score=46.72 Aligned_cols=33 Identities=27% Similarity=0.362 Sum_probs=30.1
Q ss_pred cEEEECCChhHHHHHHHHHhcCCCeEEEEecCCC
Q psy1042 119 DFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIE 152 (567)
Q Consensus 119 DvIVVGsG~aG~~aA~~Lae~~G~~VlVLE~G~~ 152 (567)
-|.|||+|..|...|..|+.+ |+.|.++|+.+.
T Consensus 7 ~V~ViGaG~mG~~iA~~~a~~-G~~V~l~d~~~~ 39 (286)
T PRK07819 7 RVGVVGAGQMGAGIAEVCARA-GVDVLVFETTEE 39 (286)
T ss_pred EEEEEcccHHHHHHHHHHHhC-CCEEEEEECCHH
Confidence 488999999999999999999 999999997643
No 382
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=86.72 E-value=0.88 Score=43.50 Aligned_cols=33 Identities=24% Similarity=0.337 Sum_probs=29.7
Q ss_pred cccEEEECCChhHHHHHHHHHhcCCC-eEEEEecC
Q psy1042 117 TFDFIIIGAGSAGCVLANRLSEIKKW-KVLLLEAG 150 (567)
Q Consensus 117 ~yDvIVVGsG~aG~~aA~~Lae~~G~-~VlVLE~G 150 (567)
..-|+|||+|..|+.+|..|++. |. +|.|+|..
T Consensus 21 ~~~V~IvG~GglGs~ia~~La~~-Gvg~i~lvD~D 54 (200)
T TIGR02354 21 QATVAICGLGGLGSNVAINLARA-GIGKLILVDFD 54 (200)
T ss_pred CCcEEEECcCHHHHHHHHHHHHc-CCCEEEEECCC
Confidence 35799999999999999999999 98 69999965
No 383
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=86.64 E-value=0.77 Score=47.64 Aligned_cols=31 Identities=35% Similarity=0.616 Sum_probs=29.2
Q ss_pred cEEEECCChhHHHHHHHHHhcCCCeEEEEecC
Q psy1042 119 DFIIIGAGSAGCVLANRLSEIKKWKVLLLEAG 150 (567)
Q Consensus 119 DvIVVGsG~aG~~aA~~Lae~~G~~VlVLE~G 150 (567)
.+.|||+|..|+..|..|+++ |++|.++++.
T Consensus 4 kI~IiG~G~mG~~~A~~L~~~-G~~V~~~~r~ 34 (341)
T PRK08229 4 RICVLGAGSIGCYLGGRLAAA-GADVTLIGRA 34 (341)
T ss_pred eEEEECCCHHHHHHHHHHHhc-CCcEEEEecH
Confidence 489999999999999999999 9999999985
No 384
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=86.54 E-value=0.91 Score=48.97 Aligned_cols=33 Identities=30% Similarity=0.391 Sum_probs=30.5
Q ss_pred cEEEECCChhHHHHHHHHHhcCCCeEEEEecCCC
Q psy1042 119 DFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIE 152 (567)
Q Consensus 119 DvIVVGsG~aG~~aA~~Lae~~G~~VlVLE~G~~ 152 (567)
.++|||+|..|+-+|..|++. |.+|.|+|+++.
T Consensus 160 ~v~ViGgG~~g~E~A~~l~~~-g~~Vtli~~~~~ 192 (441)
T PRK08010 160 HLGILGGGYIGVEFASMFANF-GSKVTILEAASL 192 (441)
T ss_pred eEEEECCCHHHHHHHHHHHHC-CCeEEEEecCCC
Confidence 699999999999999999998 999999998643
No 385
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=86.48 E-value=0.9 Score=43.62 Aligned_cols=30 Identities=13% Similarity=0.244 Sum_probs=28.1
Q ss_pred cEEEECCChhHHHHHHHHHhcCCCeEEEEec
Q psy1042 119 DFIIIGAGSAGCVLANRLSEIKKWKVLLLEA 149 (567)
Q Consensus 119 DvIVVGsG~aG~~aA~~Lae~~G~~VlVLE~ 149 (567)
-++|||||..|...|..|.+. |.+|.|+..
T Consensus 11 ~vlVvGgG~va~rk~~~Ll~~-ga~VtVvsp 40 (205)
T TIGR01470 11 AVLVVGGGDVALRKARLLLKA-GAQLRVIAE 40 (205)
T ss_pred eEEEECcCHHHHHHHHHHHHC-CCEEEEEcC
Confidence 599999999999999999998 999999974
No 386
>PRK04148 hypothetical protein; Provisional
Probab=86.41 E-value=0.74 Score=40.86 Aligned_cols=32 Identities=19% Similarity=0.381 Sum_probs=28.2
Q ss_pred cEEEECCChhHHHHHHHHHhcCCCeEEEEecCCC
Q psy1042 119 DFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIE 152 (567)
Q Consensus 119 DvIVVGsG~aG~~aA~~Lae~~G~~VlVLE~G~~ 152 (567)
-+++||.| .|..+|..|++. |..|+.+|..+.
T Consensus 19 kileIG~G-fG~~vA~~L~~~-G~~ViaIDi~~~ 50 (134)
T PRK04148 19 KIVELGIG-FYFKVAKKLKES-GFDVIVIDINEK 50 (134)
T ss_pred EEEEEEec-CCHHHHHHHHHC-CCEEEEEECCHH
Confidence 49999999 888889999998 999999996543
No 387
>PLN02487 zeta-carotene desaturase
Probab=86.35 E-value=1.2 Score=49.60 Aligned_cols=37 Identities=30% Similarity=0.244 Sum_probs=33.9
Q ss_pred cccEEEECCChhHHHHHHHHHhcCCCeEEEEecCCCCC
Q psy1042 117 TFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIEEP 154 (567)
Q Consensus 117 ~yDvIVVGsG~aG~~aA~~Lae~~G~~VlVLE~G~~~~ 154 (567)
..+|+|||+|++|+++|++|++. |++|+|+|+.+..+
T Consensus 75 ~~~v~iiG~G~~Gl~~a~~L~~~-g~~v~i~E~~~~~g 111 (569)
T PLN02487 75 KLKVAIIGAGLAGMSTAVELLDQ-GHEVDIYESRPFIG 111 (569)
T ss_pred CCeEEEECCCHHHHHHHHHHHhC-CCeeEEEecCCCCC
Confidence 35899999999999999999999 99999999987664
No 388
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=86.08 E-value=0.94 Score=45.98 Aligned_cols=32 Identities=28% Similarity=0.361 Sum_probs=29.3
Q ss_pred cEEEECCChhHHHHHHHHHhcCCCeEEEEecCC
Q psy1042 119 DFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGI 151 (567)
Q Consensus 119 DvIVVGsG~aG~~aA~~Lae~~G~~VlVLE~G~ 151 (567)
-+.|||+|..|...|..|+.+ |++|+++++.+
T Consensus 6 kI~vIGaG~mG~~iA~~la~~-G~~V~l~d~~~ 37 (292)
T PRK07530 6 KVGVIGAGQMGNGIAHVCALA-GYDVLLNDVSA 37 (292)
T ss_pred EEEEECCcHHHHHHHHHHHHC-CCeEEEEeCCH
Confidence 389999999999999999999 99999999753
No 389
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=86.04 E-value=0.92 Score=49.12 Aligned_cols=32 Identities=19% Similarity=0.205 Sum_probs=29.9
Q ss_pred cEEEECCChhHHHHHHHHHhcCCCeEEEEecCC
Q psy1042 119 DFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGI 151 (567)
Q Consensus 119 DvIVVGsG~aG~~aA~~Lae~~G~~VlVLE~G~ 151 (567)
.|||||+|..|+-+|..|++. |.+|.|+++..
T Consensus 274 ~VvVIGgG~~a~d~A~~l~~~-G~~Vtlv~~~~ 305 (449)
T TIGR01316 274 SVVVIGGGNTAVDSARTALRL-GAEVHCLYRRT 305 (449)
T ss_pred eEEEECCCHHHHHHHHHHHHc-CCEEEEEeecC
Confidence 699999999999999999998 99999999763
No 390
>PLN02546 glutathione reductase
Probab=86.03 E-value=0.91 Score=50.53 Aligned_cols=33 Identities=18% Similarity=0.241 Sum_probs=30.7
Q ss_pred cEEEECCChhHHHHHHHHHhcCCCeEEEEecCCC
Q psy1042 119 DFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIE 152 (567)
Q Consensus 119 DvIVVGsG~aG~~aA~~Lae~~G~~VlVLE~G~~ 152 (567)
.++|||+|..|+-+|..|++. |.+|.|+|+++.
T Consensus 254 ~V~VIGgG~iGvE~A~~L~~~-g~~Vtlv~~~~~ 286 (558)
T PLN02546 254 KIAIVGGGYIALEFAGIFNGL-KSDVHVFIRQKK 286 (558)
T ss_pred eEEEECCCHHHHHHHHHHHhc-CCeEEEEEeccc
Confidence 799999999999999999998 999999998754
No 391
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=86.00 E-value=1.2 Score=39.41 Aligned_cols=34 Identities=32% Similarity=0.480 Sum_probs=29.3
Q ss_pred ccEEEECCChhHHHHHHHHHhcCCC-eEEEEecCCC
Q psy1042 118 FDFIIIGAGSAGCVLANRLSEIKKW-KVLLLEAGIE 152 (567)
Q Consensus 118 yDvIVVGsG~aG~~aA~~Lae~~G~-~VlVLE~G~~ 152 (567)
.-|+|||+|..|+.+|..|+.. |. ++.|+|....
T Consensus 3 ~~v~iiG~G~vGs~va~~L~~~-Gv~~i~lvD~d~v 37 (135)
T PF00899_consen 3 KRVLIIGAGGVGSEVAKNLARS-GVGKITLVDDDIV 37 (135)
T ss_dssp -EEEEESTSHHHHHHHHHHHHH-TTSEEEEEESSBB
T ss_pred CEEEEECcCHHHHHHHHHHHHh-CCCceeecCCcce
Confidence 3489999999999999999998 88 7999996543
No 392
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=85.89 E-value=0.98 Score=45.17 Aligned_cols=34 Identities=18% Similarity=0.286 Sum_probs=30.1
Q ss_pred cccEEEECCChhHHHHHHHHHhcCC-CeEEEEecCC
Q psy1042 117 TFDFIIIGAGSAGCVLANRLSEIKK-WKVLLLEAGI 151 (567)
Q Consensus 117 ~yDvIVVGsG~aG~~aA~~Lae~~G-~~VlVLE~G~ 151 (567)
..-|+|||.|..|+.+|..||+. | .++.|+|...
T Consensus 30 ~s~VlVvG~GGVGs~vae~Lar~-GVg~itLiD~D~ 64 (268)
T PRK15116 30 DAHICVVGIGGVGSWAAEALART-GIGAITLIDMDD 64 (268)
T ss_pred CCCEEEECcCHHHHHHHHHHHHc-CCCEEEEEeCCE
Confidence 35799999999999999999998 8 5899999653
No 393
>KOG3923|consensus
Probab=85.82 E-value=0.85 Score=45.63 Aligned_cols=32 Identities=31% Similarity=0.322 Sum_probs=26.0
Q ss_pred cccEEEECCChhHHHHHHHHHhc------CCCeEEEEe
Q psy1042 117 TFDFIIIGAGSAGCVLANRLSEI------KKWKVLLLE 148 (567)
Q Consensus 117 ~yDvIVVGsG~aG~~aA~~Lae~------~G~~VlVLE 148 (567)
..+++|||+|..||++|..+.+. |-.+|.|++
T Consensus 3 ~~~iaViGaGVIGlsTA~~i~~~~~~~~ip~~~vtv~~ 40 (342)
T KOG3923|consen 3 TPRIAVIGAGVIGLSTALCILELYHSVLIPVAKVTVIS 40 (342)
T ss_pred CccEEEEcCCeechhHHHHHHHhhhhccCCcceEEEec
Confidence 45899999999999999777662 456888887
No 394
>PRK13748 putative mercuric reductase; Provisional
Probab=85.76 E-value=0.95 Score=50.50 Aligned_cols=31 Identities=23% Similarity=0.352 Sum_probs=29.4
Q ss_pred cEEEECCChhHHHHHHHHHhcCCCeEEEEecC
Q psy1042 119 DFIIIGAGSAGCVLANRLSEIKKWKVLLLEAG 150 (567)
Q Consensus 119 DvIVVGsG~aG~~aA~~Lae~~G~~VlVLE~G 150 (567)
.++|||+|..|+-+|..|++. |.+|.||++.
T Consensus 272 ~vvViGgG~ig~E~A~~l~~~-g~~Vtli~~~ 302 (561)
T PRK13748 272 RLAVIGSSVVALELAQAFARL-GSKVTILARS 302 (561)
T ss_pred eEEEECCCHHHHHHHHHHHHc-CCEEEEEecC
Confidence 699999999999999999998 9999999974
No 395
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=85.72 E-value=1 Score=46.78 Aligned_cols=34 Identities=29% Similarity=0.379 Sum_probs=30.8
Q ss_pred cccEEEECCChhHHHHHHHHHhcCCC-eEEEEecCC
Q psy1042 117 TFDFIIIGAGSAGCVLANRLSEIKKW-KVLLLEAGI 151 (567)
Q Consensus 117 ~yDvIVVGsG~aG~~aA~~Lae~~G~-~VlVLE~G~ 151 (567)
..-|+|||+|..|+.+|..|++. |. ++.|+|...
T Consensus 24 ~~~VlVvG~GglGs~va~~La~a-Gvg~i~lvD~D~ 58 (339)
T PRK07688 24 EKHVLIIGAGALGTANAEMLVRA-GVGKVTIVDRDY 58 (339)
T ss_pred CCcEEEECCCHHHHHHHHHHHHc-CCCeEEEEeCCc
Confidence 45799999999999999999999 98 899999754
No 396
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=85.57 E-value=1 Score=45.71 Aligned_cols=31 Identities=16% Similarity=0.364 Sum_probs=28.9
Q ss_pred EEEECCChhHHHHHHHHHhcCCCeEEEEecCC
Q psy1042 120 FIIIGAGSAGCVLANRLSEIKKWKVLLLEAGI 151 (567)
Q Consensus 120 vIVVGsG~aG~~aA~~Lae~~G~~VlVLE~G~ 151 (567)
|.|||+|..|...|..|+.+ |++|.++|+.+
T Consensus 6 I~ViGaG~mG~~iA~~la~~-G~~V~l~d~~~ 36 (291)
T PRK06035 6 IGVVGSGVMGQGIAQVFART-GYDVTIVDVSE 36 (291)
T ss_pred EEEECccHHHHHHHHHHHhc-CCeEEEEeCCH
Confidence 89999999999999999998 99999999753
No 397
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=85.48 E-value=1 Score=46.81 Aligned_cols=34 Identities=24% Similarity=0.336 Sum_probs=30.3
Q ss_pred ccEEEECCChhHHHHHHHHHhcCCC-eEEEEecCCC
Q psy1042 118 FDFIIIGAGSAGCVLANRLSEIKKW-KVLLLEAGIE 152 (567)
Q Consensus 118 yDvIVVGsG~aG~~aA~~Lae~~G~-~VlVLE~G~~ 152 (567)
.-|+|||+|..|+.+|..|++. |. ++.|+|....
T Consensus 25 ~~VlIiG~GglGs~va~~La~a-Gvg~i~lvD~D~v 59 (338)
T PRK12475 25 KHVLIVGAGALGAANAEALVRA-GIGKLTIADRDYV 59 (338)
T ss_pred CcEEEECCCHHHHHHHHHHHHc-CCCEEEEEcCCcc
Confidence 5699999999999999999999 97 8999997543
No 398
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=85.34 E-value=1 Score=47.04 Aligned_cols=32 Identities=25% Similarity=0.426 Sum_probs=29.3
Q ss_pred cEEEECCChhHHHHHHHHHhcCCCeEEEEecCC
Q psy1042 119 DFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGI 151 (567)
Q Consensus 119 DvIVVGsG~aG~~aA~~Lae~~G~~VlVLE~G~ 151 (567)
.+.|||+|..|++.|.-||+. |+.|+.+|.-.
T Consensus 2 kI~viGtGYVGLv~g~~lA~~-GHeVv~vDid~ 33 (414)
T COG1004 2 KITVIGTGYVGLVTGACLAEL-GHEVVCVDIDE 33 (414)
T ss_pred ceEEECCchHHHHHHHHHHHc-CCeEEEEeCCH
Confidence 378999999999999999999 99999999754
No 399
>PRK14694 putative mercuric reductase; Provisional
Probab=85.16 E-value=1.1 Score=48.79 Aligned_cols=31 Identities=23% Similarity=0.388 Sum_probs=29.2
Q ss_pred cEEEECCChhHHHHHHHHHhcCCCeEEEEecC
Q psy1042 119 DFIIIGAGSAGCVLANRLSEIKKWKVLLLEAG 150 (567)
Q Consensus 119 DvIVVGsG~aG~~aA~~Lae~~G~~VlVLE~G 150 (567)
.++|||+|..|+-+|..|++. |.+|.|++++
T Consensus 180 ~vvViG~G~~G~E~A~~l~~~-g~~Vtlv~~~ 210 (468)
T PRK14694 180 RLLVIGASVVALELAQAFARL-GSRVTVLARS 210 (468)
T ss_pred eEEEECCCHHHHHHHHHHHHc-CCeEEEEECC
Confidence 699999999999999999998 9999999964
No 400
>PRK14727 putative mercuric reductase; Provisional
Probab=85.14 E-value=1.1 Score=49.06 Aligned_cols=31 Identities=16% Similarity=0.344 Sum_probs=29.1
Q ss_pred cEEEECCChhHHHHHHHHHhcCCCeEEEEecC
Q psy1042 119 DFIIIGAGSAGCVLANRLSEIKKWKVLLLEAG 150 (567)
Q Consensus 119 DvIVVGsG~aG~~aA~~Lae~~G~~VlVLE~G 150 (567)
.++|||+|..|+-+|..|++. |.+|.|+++.
T Consensus 190 ~vvVIGgG~iG~E~A~~l~~~-G~~Vtlv~~~ 220 (479)
T PRK14727 190 SLTVIGSSVVAAEIAQAYARL-GSRVTILARS 220 (479)
T ss_pred eEEEECCCHHHHHHHHHHHHc-CCEEEEEEcC
Confidence 699999999999999999998 9999999964
No 401
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=85.09 E-value=1.1 Score=46.32 Aligned_cols=31 Identities=39% Similarity=0.386 Sum_probs=28.8
Q ss_pred EEEECCChhHHHHHHHHHhcCCCeEEEEecCC
Q psy1042 120 FIIIGAGSAGCVLANRLSEIKKWKVLLLEAGI 151 (567)
Q Consensus 120 vIVVGsG~aG~~aA~~Lae~~G~~VlVLE~G~ 151 (567)
+.|||+|..|+..|..|+++ |.+|.++.+..
T Consensus 3 I~IiGaGa~G~ala~~L~~~-g~~V~l~~r~~ 33 (326)
T PRK14620 3 ISILGAGSFGTAIAIALSSK-KISVNLWGRNH 33 (326)
T ss_pred EEEECcCHHHHHHHHHHHHC-CCeEEEEecCH
Confidence 78999999999999999999 99999999843
No 402
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=84.99 E-value=1.1 Score=46.92 Aligned_cols=31 Identities=19% Similarity=0.178 Sum_probs=28.4
Q ss_pred cEEEECCChhHHHHHHHHHhcCCCe-EEEEecC
Q psy1042 119 DFIIIGAGSAGCVLANRLSEIKKWK-VLLLEAG 150 (567)
Q Consensus 119 DvIVVGsG~aG~~aA~~Lae~~G~~-VlVLE~G 150 (567)
.+||||+|..|+-+|..|++. |.+ |.|+++.
T Consensus 174 ~vvViG~G~~g~e~A~~l~~~-g~~~Vtvi~~~ 205 (352)
T PRK12770 174 KVVVVGAGLTAVDAALEAVLL-GAEKVYLAYRR 205 (352)
T ss_pred EEEEECCCHHHHHHHHHHHHc-CCCeEEEEeec
Confidence 599999999999999999988 886 9999975
No 403
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=84.88 E-value=1.1 Score=47.10 Aligned_cols=33 Identities=30% Similarity=0.541 Sum_probs=30.1
Q ss_pred cEEEECCChhHHHHHHHHHhcCC-CeEEEEecCCC
Q psy1042 119 DFIIIGAGSAGCVLANRLSEIKK-WKVLLLEAGIE 152 (567)
Q Consensus 119 DvIVVGsG~aG~~aA~~Lae~~G-~~VlVLE~G~~ 152 (567)
++||||+|..|.++|..||++ | .+|+|.+|...
T Consensus 3 ~ilviGaG~Vg~~va~~la~~-~d~~V~iAdRs~~ 36 (389)
T COG1748 3 KILVIGAGGVGSVVAHKLAQN-GDGEVTIADRSKE 36 (389)
T ss_pred cEEEECCchhHHHHHHHHHhC-CCceEEEEeCCHH
Confidence 699999999999999999998 7 89999998743
No 404
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=84.70 E-value=1.2 Score=47.81 Aligned_cols=34 Identities=38% Similarity=0.748 Sum_probs=29.2
Q ss_pred cEEEECCChhHHHHHHHHHhc-------------CCCeEEEEecCCC
Q psy1042 119 DFIIIGAGSAGCVLANRLSEI-------------KKWKVLLLEAGIE 152 (567)
Q Consensus 119 DvIVVGsG~aG~~aA~~Lae~-------------~G~~VlVLE~G~~ 152 (567)
.++|||+|..|+-+|..|++. ++.+|.|+|+++.
T Consensus 175 ~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~ 221 (424)
T PTZ00318 175 HFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSE 221 (424)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCCCc
Confidence 699999999999999999861 2789999998754
No 405
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=84.36 E-value=1.4 Score=39.40 Aligned_cols=32 Identities=22% Similarity=0.388 Sum_probs=28.4
Q ss_pred EEEECCChhHHHHHHHHHhcCCC-eEEEEecCCC
Q psy1042 120 FIIIGAGSAGCVLANRLSEIKKW-KVLLLEAGIE 152 (567)
Q Consensus 120 vIVVGsG~aG~~aA~~Lae~~G~-~VlVLE~G~~ 152 (567)
|+|||.|..|+.+|..|+.. |. ++.|++....
T Consensus 2 VliiG~GglGs~ia~~L~~~-Gv~~i~ivD~d~v 34 (143)
T cd01483 2 VLLVGLGGLGSEIALNLARS-GVGKITLIDFDTV 34 (143)
T ss_pred EEEECCCHHHHHHHHHHHHC-CCCEEEEEcCCCc
Confidence 79999999999999999998 87 7999996543
No 406
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=84.23 E-value=1.3 Score=46.76 Aligned_cols=33 Identities=27% Similarity=0.329 Sum_probs=29.9
Q ss_pred cccEEEECCChhHHHHHHHHHhcCCCeEEEEecC
Q psy1042 117 TFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAG 150 (567)
Q Consensus 117 ~yDvIVVGsG~aG~~aA~~Lae~~G~~VlVLE~G 150 (567)
..+++|||+|.+|..+|..|... |.+|.++++.
T Consensus 167 ~~~VlViGaG~vG~~aa~~a~~l-Ga~V~v~d~~ 199 (370)
T TIGR00518 167 PGDVTIIGGGVVGTNAAKMANGL-GATVTILDIN 199 (370)
T ss_pred CceEEEEcCCHHHHHHHHHHHHC-CCeEEEEECC
Confidence 35699999999999999999998 9999999974
No 407
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=84.17 E-value=1.2 Score=44.90 Aligned_cols=31 Identities=23% Similarity=0.414 Sum_probs=28.8
Q ss_pred cEEEECCChhHHHHHHHHHhcCCCeEEEEecC
Q psy1042 119 DFIIIGAGSAGCVLANRLSEIKKWKVLLLEAG 150 (567)
Q Consensus 119 DvIVVGsG~aG~~aA~~Lae~~G~~VlVLE~G 150 (567)
.+.|||+|..|+..|..|+.+ |++|+++|..
T Consensus 5 kI~VIG~G~mG~~ia~~la~~-g~~V~~~d~~ 35 (282)
T PRK05808 5 KIGVIGAGTMGNGIAQVCAVA-GYDVVMVDIS 35 (282)
T ss_pred EEEEEccCHHHHHHHHHHHHC-CCceEEEeCC
Confidence 489999999999999999999 9999999964
No 408
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=83.99 E-value=1.8 Score=45.26 Aligned_cols=39 Identities=33% Similarity=0.313 Sum_probs=34.8
Q ss_pred CCcccEEEECCChhHHHHHHHHHhcCCCeEEEEecCCCC
Q psy1042 115 DMTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIEE 153 (567)
Q Consensus 115 ~~~yDvIVVGsG~aG~~aA~~Lae~~G~~VlVLE~G~~~ 153 (567)
...+|+|.||-|+.-++.|..|.+..+.+++.|||-+..
T Consensus 3 ~~~~DliGIG~GPfNL~LA~ll~e~~~~~~lFLerkp~F 41 (436)
T COG3486 3 AEVLDLIGIGIGPFNLSLAALLEEHSGLKSLFLERKPDF 41 (436)
T ss_pred CcceeeEEEccCchHHHHHHHhccccCcceEEEecCCCC
Confidence 457999999999999999999999756899999997764
No 409
>KOG1346|consensus
Probab=83.97 E-value=5.6 Score=41.71 Aligned_cols=77 Identities=16% Similarity=0.174 Sum_probs=50.0
Q ss_pred CCCeEEecceEEEEEEeCCCCCCCCccEEEEEEEEeCCEEEEEEcCcEEEEcCCCCccHHHHHhCCCCCcchhhhcCCcc
Q psy1042 328 RKNLTILTEAHVTRIICDKTPNKHKKLVAKSVEFFYKKKLRRARAKKEVISSAGAINSPKILMLSGIGPKDHLTSLNIKT 407 (567)
Q Consensus 328 ~~gv~I~~~t~V~~I~~d~~~~~~~~~rv~GV~~~~~g~~~~v~A~k~VVLAAGa~~Tp~LLl~SGIG~~~~L~~~gI~v 407 (567)
+.|+.|+.|+.|+.+..+. ++ .-+++.++ .+++.+ .||+|.|---+..|...||+--.+.| -|..+
T Consensus 405 ~~GV~V~pna~v~sv~~~~-~n-------l~lkL~dG---~~l~tD-~vVvavG~ePN~ela~~sgLeiD~~l--GGfrv 470 (659)
T KOG1346|consen 405 KGGVDVRPNAKVESVRKCC-KN-------LVLKLSDG---SELRTD-LVVVAVGEEPNSELAEASGLEIDEKL--GGFRV 470 (659)
T ss_pred hcCceeccchhhhhhhhhc-cc-------eEEEecCC---Ceeeee-eEEEEecCCCchhhcccccceeeccc--CcEEe
Confidence 6899999999999997653 11 12333343 367786 79999998777788888876433322 23333
Q ss_pred cccCCcchhhh
Q psy1042 408 LVDLKVGHNLQ 418 (567)
Q Consensus 408 ~~~lpVG~nl~ 418 (567)
-..|.+++|++
T Consensus 471 naeL~ar~Nvw 481 (659)
T KOG1346|consen 471 NAELKARENVW 481 (659)
T ss_pred eheeeccccee
Confidence 33444666664
No 410
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=83.92 E-value=1.3 Score=45.73 Aligned_cols=32 Identities=25% Similarity=0.212 Sum_probs=29.6
Q ss_pred cEEEECCChhHHHHHHHHHhcCCCeEEEEecCC
Q psy1042 119 DFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGI 151 (567)
Q Consensus 119 DvIVVGsG~aG~~aA~~Lae~~G~~VlVLE~G~ 151 (567)
-+.|||+|..|...|..|+++ |++|.++.+..
T Consensus 6 ~I~iIG~G~mG~~ia~~L~~~-G~~V~~~~r~~ 37 (328)
T PRK14618 6 RVAVLGAGAWGTALAVLAASK-GVPVRLWARRP 37 (328)
T ss_pred eEEEECcCHHHHHHHHHHHHC-CCeEEEEeCCH
Confidence 489999999999999999998 99999999853
No 411
>PTZ00052 thioredoxin reductase; Provisional
Probab=83.73 E-value=1.2 Score=48.87 Aligned_cols=31 Identities=26% Similarity=0.338 Sum_probs=29.2
Q ss_pred cEEEECCChhHHHHHHHHHhcCCCeEEEEecC
Q psy1042 119 DFIIIGAGSAGCVLANRLSEIKKWKVLLLEAG 150 (567)
Q Consensus 119 DvIVVGsG~aG~~aA~~Lae~~G~~VlVLE~G 150 (567)
.++|||+|..|+-+|..|++. |.+|.|+++.
T Consensus 184 ~vvIIGgG~iG~E~A~~l~~~-G~~Vtli~~~ 214 (499)
T PTZ00052 184 KTLIVGASYIGLETAGFLNEL-GFDVTVAVRS 214 (499)
T ss_pred eEEEECCCHHHHHHHHHHHHc-CCcEEEEEcC
Confidence 699999999999999999998 9999999963
No 412
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=83.73 E-value=1.5 Score=41.91 Aligned_cols=31 Identities=26% Similarity=0.365 Sum_probs=28.9
Q ss_pred cEEEECCChhHHHHHHHHHhcCCCeEEEEecC
Q psy1042 119 DFIIIGAGSAGCVLANRLSEIKKWKVLLLEAG 150 (567)
Q Consensus 119 DvIVVGsG~aG~~aA~~Lae~~G~~VlVLE~G 150 (567)
-++|+|.|-.|..+|.+|.+. |.+|++.++.
T Consensus 30 ~v~I~G~G~vG~~~A~~L~~~-G~~Vvv~D~~ 60 (200)
T cd01075 30 TVAVQGLGKVGYKLAEHLLEE-GAKLIVADIN 60 (200)
T ss_pred EEEEECCCHHHHHHHHHHHHC-CCEEEEEcCC
Confidence 499999999999999999998 9999999864
No 413
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=83.65 E-value=1.6 Score=40.48 Aligned_cols=33 Identities=18% Similarity=0.197 Sum_probs=29.3
Q ss_pred cccEEEECCCh-hHHHHHHHHHhcCCCeEEEEecC
Q psy1042 117 TFDFIIIGAGS-AGCVLANRLSEIKKWKVLLLEAG 150 (567)
Q Consensus 117 ~yDvIVVGsG~-aG~~aA~~Lae~~G~~VlVLE~G 150 (567)
...++|||+|- +|..+|..|.+. |.+|.|+.+-
T Consensus 44 gk~vlViG~G~~~G~~~a~~L~~~-g~~V~v~~r~ 77 (168)
T cd01080 44 GKKVVVVGRSNIVGKPLAALLLNR-NATVTVCHSK 77 (168)
T ss_pred CCEEEEECCcHHHHHHHHHHHhhC-CCEEEEEECC
Confidence 46799999996 699999999998 9999999974
No 414
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=83.57 E-value=1.7 Score=40.24 Aligned_cols=32 Identities=19% Similarity=0.250 Sum_probs=27.7
Q ss_pred ccEEEECCChhHHHHHHHHHhcCCCeEEEEecC
Q psy1042 118 FDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAG 150 (567)
Q Consensus 118 yDvIVVGsG~aG~~aA~~Lae~~G~~VlVLE~G 150 (567)
.-|+|+|+|.+|..||.-|... |.+|.++|..
T Consensus 21 ~~vvv~G~G~vg~gA~~~~~~l-Ga~v~~~d~~ 52 (168)
T PF01262_consen 21 AKVVVTGAGRVGQGAAEIAKGL-GAEVVVPDER 52 (168)
T ss_dssp -EEEEESTSHHHHHHHHHHHHT-T-EEEEEESS
T ss_pred eEEEEECCCHHHHHHHHHHhHC-CCEEEeccCC
Confidence 5699999999999999988888 9999999964
No 415
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=83.43 E-value=1.4 Score=44.99 Aligned_cols=30 Identities=37% Similarity=0.531 Sum_probs=27.5
Q ss_pred EEEECCChhHHHHHHHHHhcCCC-eEEEEecC
Q psy1042 120 FIIIGAGSAGCVLANRLSEIKKW-KVLLLEAG 150 (567)
Q Consensus 120 vIVVGsG~aG~~aA~~Lae~~G~-~VlVLE~G 150 (567)
+.|||+|..|+.+|..|+.. |. +|+++|.-
T Consensus 4 V~VIGaG~vG~~iA~~la~~-g~~~VvlvDi~ 34 (305)
T TIGR01763 4 ISVIGAGFVGATTAFRLAEK-ELADLVLLDVV 34 (305)
T ss_pred EEEECcCHHHHHHHHHHHHc-CCCeEEEEeCC
Confidence 78999999999999999997 76 89999973
No 416
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=83.33 E-value=1.6 Score=40.64 Aligned_cols=31 Identities=26% Similarity=0.311 Sum_probs=28.1
Q ss_pred EEEECCChhHHHHHHHHHhcCCC-eEEEEecCC
Q psy1042 120 FIIIGAGSAGCVLANRLSEIKKW-KVLLLEAGI 151 (567)
Q Consensus 120 vIVVGsG~aG~~aA~~Lae~~G~-~VlVLE~G~ 151 (567)
|+|||+|..|+.+|..|++. |. ++.|+|...
T Consensus 2 VlViG~GglGs~ia~~La~~-Gvg~i~lvD~D~ 33 (174)
T cd01487 2 VGIAGAGGLGSNIAVLLARS-GVGNLKLVDFDV 33 (174)
T ss_pred EEEECcCHHHHHHHHHHHHc-CCCeEEEEeCCE
Confidence 79999999999999999998 88 599999653
No 417
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=82.75 E-value=1.5 Score=45.09 Aligned_cols=32 Identities=31% Similarity=0.337 Sum_probs=29.6
Q ss_pred cEEEECCChhHHHHHHHHHhcCCCeEEEEecCC
Q psy1042 119 DFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGI 151 (567)
Q Consensus 119 DvIVVGsG~aG~~aA~~Lae~~G~~VlVLE~G~ 151 (567)
.+.|||+|..|+..|..|+++ |+.|.++++.+
T Consensus 3 kI~iiG~G~mG~~~a~~L~~~-g~~V~~~~r~~ 34 (325)
T PRK00094 3 KIAVLGAGSWGTALAIVLARN-GHDVTLWARDP 34 (325)
T ss_pred EEEEECCCHHHHHHHHHHHhC-CCEEEEEECCH
Confidence 489999999999999999998 99999999864
No 418
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=82.52 E-value=1.6 Score=44.11 Aligned_cols=33 Identities=21% Similarity=0.400 Sum_probs=29.3
Q ss_pred ccEEEECCChhHHHHHHHHHhcCCC-eEEEEecCC
Q psy1042 118 FDFIIIGAGSAGCVLANRLSEIKKW-KVLLLEAGI 151 (567)
Q Consensus 118 yDvIVVGsG~aG~~aA~~Lae~~G~-~VlVLE~G~ 151 (567)
-.++|||+|.+|.++|..|++. |. +|.|+.|..
T Consensus 128 k~vlIlGaGGaaraia~aL~~~-G~~~I~I~nR~~ 161 (284)
T PRK12549 128 ERVVQLGAGGAGAAVAHALLTL-GVERLTIFDVDP 161 (284)
T ss_pred CEEEEECCcHHHHHHHHHHHHc-CCCEEEEECCCH
Confidence 3699999999999999999998 86 799998753
No 419
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=82.36 E-value=1.6 Score=44.26 Aligned_cols=32 Identities=19% Similarity=0.238 Sum_probs=28.6
Q ss_pred cEEEECCChhHHHHHHHHHhcCCCe-EEEEecCC
Q psy1042 119 DFIIIGAGSAGCVLANRLSEIKKWK-VLLLEAGI 151 (567)
Q Consensus 119 DvIVVGsG~aG~~aA~~Lae~~G~~-VlVLE~G~ 151 (567)
-++|+|+|.+|.++|..|++. |.+ |.|+.|..
T Consensus 128 ~vlI~GAGGagrAia~~La~~-G~~~V~I~~R~~ 160 (289)
T PRK12548 128 KLTVIGAGGAATAIQVQCALD-GAKEITIFNIKD 160 (289)
T ss_pred EEEEECCcHHHHHHHHHHHHC-CCCEEEEEeCCc
Confidence 489999999999999999998 886 99998753
No 420
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=82.32 E-value=1.5 Score=48.00 Aligned_cols=33 Identities=18% Similarity=0.114 Sum_probs=28.0
Q ss_pred cEEEECCChhHHHHHHHHH---hcCCCeEEEEecCCC
Q psy1042 119 DFIIIGAGSAGCVLANRLS---EIKKWKVLLLEAGIE 152 (567)
Q Consensus 119 DvIVVGsG~aG~~aA~~La---e~~G~~VlVLE~G~~ 152 (567)
.++|||+|..|+-+|..++ +. |.+|.|||+++.
T Consensus 189 ~vvIIGgG~iG~E~A~~~~~l~~~-G~~Vtli~~~~~ 224 (486)
T TIGR01423 189 RVLTVGGGFISVEFAGIFNAYKPR-GGKVTLCYRNNM 224 (486)
T ss_pred eEEEECCCHHHHHHHHHHHHhccC-CCeEEEEecCCc
Confidence 6999999999999997554 34 899999998754
No 421
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=82.32 E-value=1.8 Score=41.37 Aligned_cols=34 Identities=24% Similarity=0.343 Sum_probs=30.1
Q ss_pred cccEEEECCChhHHHHHHHHHhcCCC-eEEEEecCC
Q psy1042 117 TFDFIIIGAGSAGCVLANRLSEIKKW-KVLLLEAGI 151 (567)
Q Consensus 117 ~yDvIVVGsG~aG~~aA~~Lae~~G~-~VlVLE~G~ 151 (567)
..-|+|||.|..|+.+|..|+.. |. ++.|++...
T Consensus 21 ~~~VlviG~GglGs~ia~~La~~-Gv~~i~lvD~d~ 55 (202)
T TIGR02356 21 NSHVLIIGAGGLGSPAALYLAGA-GVGTIVIVDDDH 55 (202)
T ss_pred CCCEEEECCCHHHHHHHHHHHHc-CCCeEEEecCCE
Confidence 45699999999999999999999 87 899999653
No 422
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=82.27 E-value=1.6 Score=42.56 Aligned_cols=32 Identities=28% Similarity=0.419 Sum_probs=28.8
Q ss_pred cEEEECCChhHHHHHHHHHhcCCCe---EEEEecCC
Q psy1042 119 DFIIIGAGSAGCVLANRLSEIKKWK---VLLLEAGI 151 (567)
Q Consensus 119 DvIVVGsG~aG~~aA~~Lae~~G~~---VlVLE~G~ 151 (567)
-++|+|+|.+|..+|..|++. |.+ |.|++|-+
T Consensus 27 rvlvlGAGgAg~aiA~~L~~~-G~~~~~i~ivdr~g 61 (226)
T cd05311 27 KIVINGAGAAGIAIARLLLAA-GAKPENIVVVDSKG 61 (226)
T ss_pred EEEEECchHHHHHHHHHHHHc-CcCcceEEEEeCCC
Confidence 599999999999999999998 874 99999864
No 423
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=82.10 E-value=1.5 Score=44.90 Aligned_cols=32 Identities=34% Similarity=0.563 Sum_probs=29.1
Q ss_pred EEEECCChhHHHHHHHHHhcCCCeEEEEecCCC
Q psy1042 120 FIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIE 152 (567)
Q Consensus 120 vIVVGsG~aG~~aA~~Lae~~G~~VlVLE~G~~ 152 (567)
+.|+|+|+.|+..|++|+++ |..|+++=|.+.
T Consensus 3 I~IlGaGAvG~l~g~~L~~~-g~~V~~~~R~~~ 34 (307)
T COG1893 3 ILILGAGAIGSLLGARLAKA-GHDVTLLVRSRR 34 (307)
T ss_pred EEEECCcHHHHHHHHHHHhC-CCeEEEEecHHH
Confidence 78999999999999999999 888999987754
No 424
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=82.04 E-value=1.9 Score=44.25 Aligned_cols=33 Identities=24% Similarity=0.304 Sum_probs=29.1
Q ss_pred cEEEECCChhHHHHHHHHHhcCC--CeEEEEecCCC
Q psy1042 119 DFIIIGAGSAGCVLANRLSEIKK--WKVLLLEAGIE 152 (567)
Q Consensus 119 DvIVVGsG~aG~~aA~~Lae~~G--~~VlVLE~G~~ 152 (567)
.+.|||+|..|+++|..|+.. | ..|.|+++...
T Consensus 2 kI~IIGaG~VG~~~a~~l~~~-g~~~ev~l~D~~~~ 36 (308)
T cd05292 2 KVAIVGAGFVGSTTAYALLLR-GLASEIVLVDINKA 36 (308)
T ss_pred EEEEECCCHHHHHHHHHHHHc-CCCCEEEEEECCch
Confidence 489999999999999999998 8 58999998643
No 425
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=81.98 E-value=1.8 Score=44.02 Aligned_cols=31 Identities=26% Similarity=0.362 Sum_probs=28.9
Q ss_pred EEEECCChhHHHHHHHHHhcCCCeEEEEecCC
Q psy1042 120 FIIIGAGSAGCVLANRLSEIKKWKVLLLEAGI 151 (567)
Q Consensus 120 vIVVGsG~aG~~aA~~Lae~~G~~VlVLE~G~ 151 (567)
|.|||+|..|...|..|+.+ |.+|.++++..
T Consensus 7 V~vIG~G~mG~~iA~~l~~~-G~~V~~~d~~~ 37 (295)
T PLN02545 7 VGVVGAGQMGSGIAQLAAAA-GMDVWLLDSDP 37 (295)
T ss_pred EEEECCCHHHHHHHHHHHhc-CCeEEEEeCCH
Confidence 89999999999999999998 99999999653
No 426
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=81.89 E-value=1.6 Score=46.64 Aligned_cols=32 Identities=28% Similarity=0.395 Sum_probs=29.4
Q ss_pred EEEECCChhHHHHHHHHHhcCCCeEEEEecCCC
Q psy1042 120 FIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIE 152 (567)
Q Consensus 120 vIVVGsG~aG~~aA~~Lae~~G~~VlVLE~G~~ 152 (567)
+.|||.|..|+.+|..|+++ |++|+++++...
T Consensus 3 I~vIGlG~~G~~lA~~La~~-G~~V~~~d~~~~ 34 (411)
T TIGR03026 3 IAVIGLGYVGLPLAALLADL-GHEVTGVDIDQE 34 (411)
T ss_pred EEEECCCchhHHHHHHHHhc-CCeEEEEECCHH
Confidence 78999999999999999998 999999997643
No 427
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=81.80 E-value=1.8 Score=46.04 Aligned_cols=32 Identities=22% Similarity=0.217 Sum_probs=29.0
Q ss_pred cEEEECCChhHHHHHHHHHhcCCCeEEEEecCC
Q psy1042 119 DFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGI 151 (567)
Q Consensus 119 DvIVVGsG~aG~~aA~~Lae~~G~~VlVLE~G~ 151 (567)
.|+|+|.|..|..+|..|... |.+|+++|..+
T Consensus 204 tVvViG~G~IG~~va~~ak~~-Ga~ViV~d~d~ 235 (413)
T cd00401 204 VAVVAGYGDVGKGCAQSLRGQ-GARVIVTEVDP 235 (413)
T ss_pred EEEEECCCHHHHHHHHHHHHC-CCEEEEEECCh
Confidence 699999999999999999888 99999999643
No 428
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=81.63 E-value=1.7 Score=47.02 Aligned_cols=32 Identities=16% Similarity=0.280 Sum_probs=29.3
Q ss_pred cEEEECCChhHHHHHHHHHhcCCCeEEEEecCC
Q psy1042 119 DFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGI 151 (567)
Q Consensus 119 DvIVVGsG~aG~~aA~~Lae~~G~~VlVLE~G~ 151 (567)
-++|+|+|..|.++|..|++. |.+|++.|+..
T Consensus 7 ~v~v~G~g~~G~s~a~~l~~~-G~~V~~~d~~~ 38 (447)
T PRK02472 7 KVLVLGLAKSGYAAAKLLHKL-GANVTVNDGKP 38 (447)
T ss_pred EEEEEeeCHHHHHHHHHHHHC-CCEEEEEcCCC
Confidence 389999999999999999998 99999999754
No 429
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=81.48 E-value=1.7 Score=46.49 Aligned_cols=33 Identities=18% Similarity=0.243 Sum_probs=29.9
Q ss_pred cEEEECCChhHHHHHHHHHhcCCCeEEEEecCCC
Q psy1042 119 DFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIE 152 (567)
Q Consensus 119 DvIVVGsG~aG~~aA~~Lae~~G~~VlVLE~G~~ 152 (567)
-+.|||.|..|+.+|..|+++ |++|.++++.+.
T Consensus 5 kI~VIGlG~~G~~~A~~La~~-G~~V~~~D~~~~ 37 (415)
T PRK11064 5 TISVIGLGYIGLPTAAAFASR-QKQVIGVDINQH 37 (415)
T ss_pred EEEEECcchhhHHHHHHHHhC-CCEEEEEeCCHH
Confidence 389999999999999999999 999999997543
No 430
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=81.11 E-value=2.3 Score=43.57 Aligned_cols=31 Identities=29% Similarity=0.499 Sum_probs=28.7
Q ss_pred cEEEECCChhHHHHHHHHHhcCCCeEEEEecC
Q psy1042 119 DFIIIGAGSAGCVLANRLSEIKKWKVLLLEAG 150 (567)
Q Consensus 119 DvIVVGsG~aG~~aA~~Lae~~G~~VlVLE~G 150 (567)
.|.|||+|..|+..|..|++. |++|.++++.
T Consensus 6 ~I~vIGaG~mG~~iA~~l~~~-g~~V~~~d~~ 36 (311)
T PRK06130 6 NLAIIGAGTMGSGIAALFARK-GLQVVLIDVM 36 (311)
T ss_pred EEEEECCCHHHHHHHHHHHhC-CCeEEEEECC
Confidence 489999999999999999998 9999999964
No 431
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=79.97 E-value=1.7 Score=43.81 Aligned_cols=33 Identities=18% Similarity=0.298 Sum_probs=29.7
Q ss_pred cccEEEECCChhHHHHHHHHHhcCCCeEEEEecC
Q psy1042 117 TFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAG 150 (567)
Q Consensus 117 ~yDvIVVGsG~aG~~aA~~Lae~~G~~VlVLE~G 150 (567)
.-+|+|||+|.+|.-+|.-+.-- |.+|.+||..
T Consensus 168 ~~kv~iiGGGvvgtnaAkiA~gl-gA~Vtild~n 200 (371)
T COG0686 168 PAKVVVLGGGVVGTNAAKIAIGL-GADVTILDLN 200 (371)
T ss_pred CccEEEECCccccchHHHHHhcc-CCeeEEEecC
Confidence 35899999999999999888887 9999999975
No 432
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=79.85 E-value=2.2 Score=46.24 Aligned_cols=31 Identities=16% Similarity=0.250 Sum_probs=28.7
Q ss_pred cEEEECCChhHHHHHHHHHhcCCC-eEEEEecC
Q psy1042 119 DFIIIGAGSAGCVLANRLSEIKKW-KVLLLEAG 150 (567)
Q Consensus 119 DvIVVGsG~aG~~aA~~Lae~~G~-~VlVLE~G 150 (567)
.|+|||+|..|+-+|..|++. |. +|.|+++.
T Consensus 275 ~VvViGgG~~g~e~A~~l~~~-G~~~Vtlv~~~ 306 (457)
T PRK11749 275 RVVVIGGGNTAMDAARTAKRL-GAESVTIVYRR 306 (457)
T ss_pred eEEEECCCHHHHHHHHHHHHc-CCCeEEEeeec
Confidence 699999999999999999998 87 89999974
No 433
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=79.67 E-value=2.6 Score=43.18 Aligned_cols=32 Identities=31% Similarity=0.477 Sum_probs=28.5
Q ss_pred EEEECCChhHHHHHHHHHhcCC--CeEEEEecCCC
Q psy1042 120 FIIIGAGSAGCVLANRLSEIKK--WKVLLLEAGIE 152 (567)
Q Consensus 120 vIVVGsG~aG~~aA~~Lae~~G--~~VlVLE~G~~ 152 (567)
+.|||+|..|.++|..|+.. | ..|.|+++...
T Consensus 3 I~IIGaG~vG~~~a~~l~~~-g~~~ei~l~D~~~~ 36 (306)
T cd05291 3 VVIIGAGHVGSSFAYSLVNQ-GIADELVLIDINEE 36 (306)
T ss_pred EEEECCCHHHHHHHHHHHhc-CCCCEEEEEeCCcc
Confidence 79999999999999999998 7 47999998544
No 434
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=79.64 E-value=2.2 Score=46.88 Aligned_cols=33 Identities=30% Similarity=0.447 Sum_probs=30.1
Q ss_pred cEEEECCChhHHHHHHHHHhcCCCeEEEEecCCC
Q psy1042 119 DFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIE 152 (567)
Q Consensus 119 DvIVVGsG~aG~~aA~~Lae~~G~~VlVLE~G~~ 152 (567)
-|.|||+|..|...|..|+.+ |+.|.|.|+.+.
T Consensus 7 kV~VIGaG~MG~gIA~~la~a-G~~V~l~d~~~e 39 (503)
T TIGR02279 7 TVAVIGAGAMGAGIAQVAASA-GHQVLLYDIRAE 39 (503)
T ss_pred EEEEECcCHHHHHHHHHHHhC-CCeEEEEeCCHH
Confidence 389999999999999999999 999999997643
No 435
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=79.58 E-value=2.6 Score=41.49 Aligned_cols=34 Identities=24% Similarity=0.447 Sum_probs=29.5
Q ss_pred cccEEEECCChhHHHHHHHHHhcCCC-eEEEEecCC
Q psy1042 117 TFDFIIIGAGSAGCVLANRLSEIKKW-KVLLLEAGI 151 (567)
Q Consensus 117 ~yDvIVVGsG~aG~~aA~~Lae~~G~-~VlVLE~G~ 151 (567)
...|+|||.|..|+.+|..|+.. |. ++.|+|...
T Consensus 24 ~~~VlvvG~GglGs~va~~La~~-Gvg~i~lvD~D~ 58 (240)
T TIGR02355 24 ASRVLIVGLGGLGCAASQYLAAA-GVGNLTLLDFDT 58 (240)
T ss_pred CCcEEEECcCHHHHHHHHHHHHc-CCCEEEEEeCCc
Confidence 46799999999999999999998 76 788888653
No 436
>PRK08328 hypothetical protein; Provisional
Probab=79.54 E-value=2.5 Score=41.40 Aligned_cols=33 Identities=21% Similarity=0.416 Sum_probs=28.7
Q ss_pred cccEEEECCChhHHHHHHHHHhcCCC-eEEEEecC
Q psy1042 117 TFDFIIIGAGSAGCVLANRLSEIKKW-KVLLLEAG 150 (567)
Q Consensus 117 ~yDvIVVGsG~aG~~aA~~Lae~~G~-~VlVLE~G 150 (567)
..-|+|||.|..|+.+|..|+.. |. ++.|+|..
T Consensus 27 ~~~VlIiG~GGlGs~ia~~La~~-Gvg~i~lvD~D 60 (231)
T PRK08328 27 KAKVAVVGVGGLGSPVAYYLAAA-GVGRILLIDEQ 60 (231)
T ss_pred CCcEEEECCCHHHHHHHHHHHHc-CCCEEEEEcCC
Confidence 35699999999999999999998 86 68888754
No 437
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=79.18 E-value=2.7 Score=40.72 Aligned_cols=31 Identities=26% Similarity=0.427 Sum_probs=28.0
Q ss_pred EEEEC-CChhHHHHHHHHHhcCCCeEEEEecCC
Q psy1042 120 FIIIG-AGSAGCVLANRLSEIKKWKVLLLEAGI 151 (567)
Q Consensus 120 vIVVG-sG~aG~~aA~~Lae~~G~~VlVLE~G~ 151 (567)
+.||| +|..|.++|..|+++ |++|.+..+.+
T Consensus 3 I~IIGG~G~mG~ala~~L~~~-G~~V~v~~r~~ 34 (219)
T TIGR01915 3 IAVLGGTGDQGKGLALRLAKA-GNKIIIGSRDL 34 (219)
T ss_pred EEEEcCCCHHHHHHHHHHHhC-CCEEEEEEcCH
Confidence 78997 799999999999998 99999998753
No 438
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=78.87 E-value=2.5 Score=43.27 Aligned_cols=32 Identities=28% Similarity=0.309 Sum_probs=29.4
Q ss_pred cEEEECCChhHHHHHHHHHhcCCCeEEEEecCC
Q psy1042 119 DFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGI 151 (567)
Q Consensus 119 DvIVVGsG~aG~~aA~~Lae~~G~~VlVLE~G~ 151 (567)
.+.|||+|..|..+|..|+++ |++|.+..+..
T Consensus 6 ~I~iiG~G~~G~~lA~~l~~~-G~~V~~~~r~~ 37 (308)
T PRK14619 6 TIAILGAGAWGSTLAGLASAN-GHRVRVWSRRS 37 (308)
T ss_pred EEEEECccHHHHHHHHHHHHC-CCEEEEEeCCC
Confidence 489999999999999999999 99999998753
No 439
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=78.33 E-value=2.7 Score=42.58 Aligned_cols=33 Identities=18% Similarity=0.365 Sum_probs=30.0
Q ss_pred ccEEEECCChhHHHHHHHHHhcCCCeEEEEecCC
Q psy1042 118 FDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGI 151 (567)
Q Consensus 118 yDvIVVGsG~aG~~aA~~Lae~~G~~VlVLE~G~ 151 (567)
--++|||.|..|..+|..|... |.+|.+.+|..
T Consensus 152 k~v~IiG~G~iG~avA~~L~~~-G~~V~v~~R~~ 184 (287)
T TIGR02853 152 SNVMVLGFGRTGMTIARTFSAL-GARVFVGARSS 184 (287)
T ss_pred CEEEEEcChHHHHHHHHHHHHC-CCEEEEEeCCH
Confidence 3699999999999999999998 99999999753
No 440
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=78.27 E-value=2.5 Score=45.98 Aligned_cols=34 Identities=18% Similarity=0.272 Sum_probs=29.0
Q ss_pred cEEEECCChhHHHHHHHHHhc-CCCeEEEEecCCC
Q psy1042 119 DFIIIGAGSAGCVLANRLSEI-KKWKVLLLEAGIE 152 (567)
Q Consensus 119 DvIVVGsG~aG~~aA~~Lae~-~G~~VlVLE~G~~ 152 (567)
.+.|||.|..|+++|..||+. .|++|+.+|....
T Consensus 3 ~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~ 37 (473)
T PLN02353 3 KICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVP 37 (473)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHH
Confidence 489999999999999999997 2488999996543
No 441
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=78.26 E-value=3 Score=40.29 Aligned_cols=33 Identities=24% Similarity=0.241 Sum_probs=29.4
Q ss_pred cccEEEECCChhHHHHHHHHHhcCCCe-EEEEecC
Q psy1042 117 TFDFIIIGAGSAGCVLANRLSEIKKWK-VLLLEAG 150 (567)
Q Consensus 117 ~yDvIVVGsG~aG~~aA~~Lae~~G~~-VlVLE~G 150 (567)
..-|+|||+|..|+.+|..|+.. |.. +.|+|..
T Consensus 28 ~~~V~ViG~GglGs~ia~~La~~-Gvg~i~lvD~D 61 (212)
T PRK08644 28 KAKVGIAGAGGLGSNIAVALARS-GVGNLKLVDFD 61 (212)
T ss_pred CCCEEEECcCHHHHHHHHHHHHc-CCCeEEEEeCC
Confidence 35799999999999999999998 874 9999965
No 442
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=78.18 E-value=2.5 Score=46.75 Aligned_cols=31 Identities=35% Similarity=0.473 Sum_probs=28.6
Q ss_pred cEEEECCChhHHHHHHHHHhcCCCeEEEEecC
Q psy1042 119 DFIIIGAGSAGCVLANRLSEIKKWKVLLLEAG 150 (567)
Q Consensus 119 DvIVVGsG~aG~~aA~~Lae~~G~~VlVLE~G 150 (567)
-++|+|+|.+|.++|..|++. |.+|.|+.|.
T Consensus 381 ~vlIlGaGGagrAia~~L~~~-G~~V~i~nR~ 411 (529)
T PLN02520 381 LFVVIGAGGAGKALAYGAKEK-GARVVIANRT 411 (529)
T ss_pred EEEEECCcHHHHHHHHHHHHC-CCEEEEEcCC
Confidence 489999999999999999998 9999999874
No 443
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=78.16 E-value=2.9 Score=41.24 Aligned_cols=35 Identities=17% Similarity=0.408 Sum_probs=28.8
Q ss_pred CcccEEEECCChhHHHHHHHHHhcC----------CCeEEEEecC
Q psy1042 116 MTFDFIIIGAGSAGCVLANRLSEIK----------KWKVLLLEAG 150 (567)
Q Consensus 116 ~~yDvIVVGsG~aG~~aA~~Lae~~----------G~~VlVLE~G 150 (567)
....|+|||+|..|+.+|..||+.. |.++.|+|..
T Consensus 10 ~~~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D 54 (244)
T TIGR03736 10 RPVSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDD 54 (244)
T ss_pred CCCeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEECCC
Confidence 4568999999999999999999861 2388888854
No 444
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=78.11 E-value=2.4 Score=48.75 Aligned_cols=33 Identities=18% Similarity=0.251 Sum_probs=30.0
Q ss_pred cEEEECCChhHHHHHHHHHhcCCCeEEEEecCCC
Q psy1042 119 DFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIE 152 (567)
Q Consensus 119 DvIVVGsG~aG~~aA~~Lae~~G~~VlVLE~G~~ 152 (567)
-|.|||+|..|.-.|..+|.+ |++|.|+|....
T Consensus 315 ~v~ViGaG~mG~gIA~~~a~~-G~~V~l~d~~~~ 347 (715)
T PRK11730 315 QAAVLGAGIMGGGIAYQSASK-GVPVIMKDINQK 347 (715)
T ss_pred eEEEECCchhHHHHHHHHHhC-CCeEEEEeCCHH
Confidence 389999999999999999999 999999997643
No 445
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=78.10 E-value=2.4 Score=46.11 Aligned_cols=32 Identities=13% Similarity=0.269 Sum_probs=30.0
Q ss_pred cEEEECCChhHHHHHHHHHhcCCCeEEEEecCC
Q psy1042 119 DFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGI 151 (567)
Q Consensus 119 DvIVVGsG~aG~~aA~~Lae~~G~~VlVLE~G~ 151 (567)
.|+|||+|..|+-+|..|++. +.+|.|+.++.
T Consensus 206 ~VvVVG~G~Sg~diA~~L~~~-a~~V~l~~r~~ 237 (461)
T PLN02172 206 VVVVIGNFASGADISRDIAKV-AKEVHIASRAS 237 (461)
T ss_pred EEEEECCCcCHHHHHHHHHHh-CCeEEEEEeec
Confidence 699999999999999999998 99999999864
No 446
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=77.62 E-value=2.6 Score=45.52 Aligned_cols=35 Identities=26% Similarity=0.349 Sum_probs=31.8
Q ss_pred ccEEEECCChhHHHHHHHHHhcCCCeEEEEecCCCC
Q psy1042 118 FDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIEE 153 (567)
Q Consensus 118 yDvIVVGsG~aG~~aA~~Lae~~G~~VlVLE~G~~~ 153 (567)
-.|+|||+|.+|.-+|..|++. |.+|.++=|.+..
T Consensus 176 KrV~VIG~GaSA~di~~~l~~~-ga~vt~~qRs~~~ 210 (443)
T COG2072 176 KRVLVIGAGASAVDIAPELAEV-GASVTLSQRSPPH 210 (443)
T ss_pred CeEEEECCCccHHHHHHHHHhc-CCeeEEEecCCCc
Confidence 3799999999999999999999 9999999987653
No 447
>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A.
Probab=77.56 E-value=2.8 Score=37.41 Aligned_cols=30 Identities=23% Similarity=0.460 Sum_probs=25.7
Q ss_pred EEEECCChhHHHHHHHHHhcCCCeEEEEecC
Q psy1042 120 FIIIGAGSAGCVLANRLSEIKKWKVLLLEAG 150 (567)
Q Consensus 120 vIVVGsG~aG~~aA~~Lae~~G~~VlVLE~G 150 (567)
++|+|+|..+..+|.-++.- |++|+|+|--
T Consensus 1 L~I~GaG~va~al~~la~~l-g~~v~v~d~r 30 (136)
T PF13478_consen 1 LVIFGAGHVARALARLAALL-GFRVTVVDPR 30 (136)
T ss_dssp EEEES-STCHHHHHHHHHHC-TEEEEEEES-
T ss_pred CEEEeCcHHHHHHHHHHHhC-CCEEEEEcCC
Confidence 58999999999999888888 9999999954
No 448
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=77.53 E-value=2.6 Score=48.48 Aligned_cols=33 Identities=15% Similarity=0.221 Sum_probs=30.1
Q ss_pred cEEEECCChhHHHHHHHHHhcCCCeEEEEecCCC
Q psy1042 119 DFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIE 152 (567)
Q Consensus 119 DvIVVGsG~aG~~aA~~Lae~~G~~VlVLE~G~~ 152 (567)
-|.|||+|..|.-.|..+|.+ |+.|.|+|....
T Consensus 315 ~v~ViGaG~mG~gIA~~~a~~-G~~V~l~d~~~~ 347 (714)
T TIGR02437 315 QAAVLGAGIMGGGIAYQSASK-GTPIVMKDINQH 347 (714)
T ss_pred eEEEECCchHHHHHHHHHHhC-CCeEEEEeCCHH
Confidence 499999999999999999999 999999997543
No 449
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=77.33 E-value=2.8 Score=42.27 Aligned_cols=30 Identities=23% Similarity=0.245 Sum_probs=28.2
Q ss_pred EEEECCChhHHHHHHHHHhcCCCeEEEEecC
Q psy1042 120 FIIIGAGSAGCVLANRLSEIKKWKVLLLEAG 150 (567)
Q Consensus 120 vIVVGsG~aG~~aA~~Lae~~G~~VlVLE~G 150 (567)
+.|||.|..|.+.|..|+++ |.+|+++++.
T Consensus 3 I~IIG~G~mG~sla~~L~~~-g~~V~~~d~~ 32 (279)
T PRK07417 3 IGIVGLGLIGGSLGLDLRSL-GHTVYGVSRR 32 (279)
T ss_pred EEEEeecHHHHHHHHHHHHC-CCEEEEEECC
Confidence 78999999999999999998 9999999975
No 450
>PRK08017 oxidoreductase; Provisional
Probab=77.31 E-value=3.2 Score=40.63 Aligned_cols=30 Identities=23% Similarity=0.261 Sum_probs=27.9
Q ss_pred EEEECC-ChhHHHHHHHHHhcCCCeEEEEecC
Q psy1042 120 FIIIGA-GSAGCVLANRLSEIKKWKVLLLEAG 150 (567)
Q Consensus 120 vIVVGs-G~aG~~aA~~Lae~~G~~VlVLE~G 150 (567)
++|+|+ |..|..+|.+|+++ |.+|+++.+.
T Consensus 5 vlVtGasg~IG~~la~~l~~~-g~~v~~~~r~ 35 (256)
T PRK08017 5 VLITGCSSGIGLEAALELKRR-GYRVLAACRK 35 (256)
T ss_pred EEEECCCChHHHHHHHHHHHC-CCEEEEEeCC
Confidence 899998 99999999999998 9999999875
No 451
>PRK08223 hypothetical protein; Validated
Probab=77.25 E-value=3.1 Score=41.96 Aligned_cols=34 Identities=18% Similarity=0.261 Sum_probs=29.6
Q ss_pred cccEEEECCChhHHHHHHHHHhcCCC-eEEEEecCC
Q psy1042 117 TFDFIIIGAGSAGCVLANRLSEIKKW-KVLLLEAGI 151 (567)
Q Consensus 117 ~yDvIVVGsG~aG~~aA~~Lae~~G~-~VlVLE~G~ 151 (567)
..-|+|||.|..|+.+|..||.. |. ++.|+|-..
T Consensus 27 ~s~VlIvG~GGLGs~va~~LA~a-GVG~i~lvD~D~ 61 (287)
T PRK08223 27 NSRVAIAGLGGVGGIHLLTLARL-GIGKFTIADFDV 61 (287)
T ss_pred cCCEEEECCCHHHHHHHHHHHHh-CCCeEEEEeCCC
Confidence 46799999999999999999999 87 688888543
No 452
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=77.10 E-value=2.9 Score=46.01 Aligned_cols=32 Identities=31% Similarity=0.449 Sum_probs=29.6
Q ss_pred EEEECCChhHHHHHHHHHhcCCCeEEEEecCCC
Q psy1042 120 FIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIE 152 (567)
Q Consensus 120 vIVVGsG~aG~~aA~~Lae~~G~~VlVLE~G~~ 152 (567)
|-|||+|..|...|..|+.+ |+.|.|.|+...
T Consensus 10 V~VIGaG~MG~gIA~~la~a-G~~V~l~D~~~e 41 (507)
T PRK08268 10 VAVIGAGAMGAGIAQVAAQA-GHTVLLYDARAG 41 (507)
T ss_pred EEEECCCHHHHHHHHHHHhC-CCeEEEEeCCHH
Confidence 89999999999999999999 999999997644
No 453
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=76.98 E-value=3 Score=42.50 Aligned_cols=32 Identities=38% Similarity=0.473 Sum_probs=28.1
Q ss_pred EEEECCChhHHHHHHHHHhcCCC-eEEEEecCCC
Q psy1042 120 FIIIGAGSAGCVLANRLSEIKKW-KVLLLEAGIE 152 (567)
Q Consensus 120 vIVVGsG~aG~~aA~~Lae~~G~-~VlVLE~G~~ 152 (567)
+.|||+|..|..+|..|+.. |. .|.|+|....
T Consensus 1 I~IIGaG~vG~~ia~~la~~-~l~eV~L~Di~e~ 33 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALK-ELGDVVLLDIVEG 33 (300)
T ss_pred CEEECCCHHHHHHHHHHHhC-CCcEEEEEeCCCc
Confidence 47999999999999999987 76 9999998643
No 454
>PLN02612 phytoene desaturase
Probab=76.92 E-value=4.3 Score=45.39 Aligned_cols=45 Identities=7% Similarity=0.035 Sum_probs=34.7
Q ss_pred CCCeEEecceEEEEEEeCCCCCCCCccEEEEEEEEeCCEEEEEEcCcEEEEcCCC
Q psy1042 328 RKNLTILTEAHVTRIICDKTPNKHKKLVAKSVEFFYKKKLRRARAKKEVISSAGA 382 (567)
Q Consensus 328 ~~gv~I~~~t~V~~I~~d~~~~~~~~~rv~GV~~~~~g~~~~v~A~k~VVLAAGa 382 (567)
+.|.+|.++++|++|..+++ + ++++|++.+ |+ .+.|+ .||+|+..
T Consensus 320 ~~G~~I~l~~~V~~I~~~~~-g-----~v~~v~~~~-G~--~~~ad-~VI~a~p~ 364 (567)
T PLN02612 320 SLGGEVRLNSRIKKIELNDD-G-----TVKHFLLTN-GS--VVEGD-VYVSATPV 364 (567)
T ss_pred hcCCEEEeCCeeeEEEECCC-C-----cEEEEEECC-Cc--EEECC-EEEECCCH
Confidence 47899999999999998643 3 677888754 33 57896 69998864
No 455
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=76.86 E-value=3.3 Score=40.41 Aligned_cols=33 Identities=24% Similarity=0.370 Sum_probs=29.0
Q ss_pred cccEEEECCChhHHHHHHHHHhcCCC-eEEEEecC
Q psy1042 117 TFDFIIIGAGSAGCVLANRLSEIKKW-KVLLLEAG 150 (567)
Q Consensus 117 ~yDvIVVGsG~aG~~aA~~Lae~~G~-~VlVLE~G 150 (567)
..-|+|||.|..|+.+|..|+.. |. ++.|+|..
T Consensus 21 ~~~VlivG~GglGs~va~~La~~-Gvg~i~lvD~D 54 (228)
T cd00757 21 NARVLVVGAGGLGSPAAEYLAAA-GVGKLGLVDDD 54 (228)
T ss_pred CCcEEEECCCHHHHHHHHHHHHc-CCCEEEEEcCC
Confidence 35799999999999999999998 87 78888854
No 456
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=76.81 E-value=2.9 Score=45.86 Aligned_cols=32 Identities=22% Similarity=0.195 Sum_probs=29.5
Q ss_pred cEEEECCChhHHHHHHHHHhcCCCeEEEEecCC
Q psy1042 119 DFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGI 151 (567)
Q Consensus 119 DvIVVGsG~aG~~aA~~Lae~~G~~VlVLE~G~ 151 (567)
-|-|||+|..|...|..|+.+ |++|+|.++.+
T Consensus 6 kIavIG~G~MG~~iA~~la~~-G~~V~v~D~~~ 37 (495)
T PRK07531 6 KAACIGGGVIGGGWAARFLLA-GIDVAVFDPHP 37 (495)
T ss_pred EEEEECcCHHHHHHHHHHHhC-CCeEEEEeCCH
Confidence 388999999999999999999 99999999754
No 457
>KOG2495|consensus
Probab=76.66 E-value=1.4 Score=46.30 Aligned_cols=35 Identities=34% Similarity=0.653 Sum_probs=29.0
Q ss_pred ccEEEECCChhHHHHHHHHHhc-------------CCCeEEEEecCCC
Q psy1042 118 FDFIIIGAGSAGCVLANRLSEI-------------KKWKVLLLEAGIE 152 (567)
Q Consensus 118 yDvIVVGsG~aG~~aA~~Lae~-------------~G~~VlVLE~G~~ 152 (567)
--+||||||+.|.-.|.+|+.- .-.+|++||+.+.
T Consensus 219 Lh~VVVGGGPTGVEFAaEL~Dfi~~Dl~k~yp~l~~~i~vtLiEA~d~ 266 (491)
T KOG2495|consen 219 LHFVVVGGGPTGVEFAAELADFIPEDLRKIYPELKKDIKVTLIEAADH 266 (491)
T ss_pred EEEEEECCCCcceeehHHHHHHHHHHHHHhhhcchhheEEEeeccchh
Confidence 5799999999999999999841 1358999999864
No 458
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=76.61 E-value=3.3 Score=41.47 Aligned_cols=32 Identities=28% Similarity=0.422 Sum_probs=29.1
Q ss_pred cEEEECCChhHHHHHHHHHhcCCCeEEEEecCC
Q psy1042 119 DFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGI 151 (567)
Q Consensus 119 DvIVVGsG~aG~~aA~~Lae~~G~~VlVLE~G~ 151 (567)
.++|+|+|.+|.++|..|++. |.+|.|+.|..
T Consensus 119 ~vliiGaGg~g~aia~~L~~~-g~~v~v~~R~~ 150 (270)
T TIGR00507 119 RVLIIGAGGAARAVALPLLKA-DCNVIIANRTV 150 (270)
T ss_pred EEEEEcCcHHHHHHHHHHHHC-CCEEEEEeCCH
Confidence 589999999999999999998 99999998753
No 459
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=76.40 E-value=4.8 Score=32.54 Aligned_cols=31 Identities=29% Similarity=0.450 Sum_probs=27.7
Q ss_pred cEEEECCChhHHHHHHHHHhcCCCeEEEEec
Q psy1042 119 DFIIIGAGSAGCVLANRLSEIKKWKVLLLEA 149 (567)
Q Consensus 119 DvIVVGsG~aG~~aA~~Lae~~G~~VlVLE~ 149 (567)
.++|+|.|..|..+|..|.+..+.+|.+.++
T Consensus 25 ~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r 55 (86)
T cd05191 25 TVVVLGAGEVGKGIAKLLADEGGKKVVLCDR 55 (86)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence 5999999999999999999963578999987
No 460
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=76.37 E-value=3.6 Score=40.68 Aligned_cols=33 Identities=18% Similarity=0.433 Sum_probs=29.5
Q ss_pred cccEEEECCChhHHHHHHHHHhcCCC-eEEEEecC
Q psy1042 117 TFDFIIIGAGSAGCVLANRLSEIKKW-KVLLLEAG 150 (567)
Q Consensus 117 ~yDvIVVGsG~aG~~aA~~Lae~~G~-~VlVLE~G 150 (567)
...|+|||.|..|+.+|..|+.. |. ++.|++..
T Consensus 32 ~~~VliiG~GglGs~va~~La~~-Gvg~i~lvD~D 65 (245)
T PRK05690 32 AARVLVVGLGGLGCAASQYLAAA-GVGTLTLVDFD 65 (245)
T ss_pred CCeEEEECCCHHHHHHHHHHHHc-CCCEEEEEcCC
Confidence 46799999999999999999998 86 79999864
No 461
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=76.27 E-value=3.4 Score=43.88 Aligned_cols=32 Identities=22% Similarity=0.294 Sum_probs=29.3
Q ss_pred cEEEECCChhHHHHHHHHHhcCCCeEEEEecCC
Q psy1042 119 DFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGI 151 (567)
Q Consensus 119 DvIVVGsG~aG~~aA~~Lae~~G~~VlVLE~G~ 151 (567)
-|+|||.|..|..+|..|... |.+|+++|..+
T Consensus 197 ~VvViG~G~IG~~vA~~ak~~-Ga~ViV~d~dp 228 (406)
T TIGR00936 197 TVVVAGYGWCGKGIAMRARGM-GARVIVTEVDP 228 (406)
T ss_pred EEEEECCCHHHHHHHHHHhhC-cCEEEEEeCCh
Confidence 699999999999999999988 99999999654
No 462
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=75.95 E-value=3 Score=48.39 Aligned_cols=32 Identities=13% Similarity=0.184 Sum_probs=29.0
Q ss_pred cEEEECCChhHHHHHHHHHhcCCCe-EEEEecCC
Q psy1042 119 DFIIIGAGSAGCVLANRLSEIKKWK-VLLLEAGI 151 (567)
Q Consensus 119 DvIVVGsG~aG~~aA~~Lae~~G~~-VlVLE~G~ 151 (567)
.|||||+|..|+-+|..|.+. |.+ |.|+++..
T Consensus 572 ~VvVIGgG~~a~d~A~~~~r~-Ga~~Vtlv~r~~ 604 (752)
T PRK12778 572 KVAVVGGGNTAMDSARTAKRL-GAERVTIVYRRS 604 (752)
T ss_pred cEEEECCcHHHHHHHHHHHHc-CCCeEEEeeecC
Confidence 699999999999999999998 886 99999753
No 463
>PRK06223 malate dehydrogenase; Reviewed
Probab=75.86 E-value=3.6 Score=42.02 Aligned_cols=32 Identities=34% Similarity=0.471 Sum_probs=28.3
Q ss_pred cEEEECCChhHHHHHHHHHhcCCC-eEEEEecCC
Q psy1042 119 DFIIIGAGSAGCVLANRLSEIKKW-KVLLLEAGI 151 (567)
Q Consensus 119 DvIVVGsG~aG~~aA~~Lae~~G~-~VlVLE~G~ 151 (567)
-+.|||+|..|.++|..|+.. |. .|.|+|.-.
T Consensus 4 KI~VIGaG~vG~~ia~~la~~-~~~ev~L~D~~~ 36 (307)
T PRK06223 4 KISIIGAGNVGATLAHLLALK-ELGDVVLFDIVE 36 (307)
T ss_pred EEEEECCCHHHHHHHHHHHhC-CCeEEEEEECCC
Confidence 489999999999999999997 65 999999743
No 464
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=75.76 E-value=4 Score=42.07 Aligned_cols=33 Identities=24% Similarity=0.371 Sum_probs=29.3
Q ss_pred cEEEECCChhHHHHHHHHHhcCCC-eEEEEecCCC
Q psy1042 119 DFIIIGAGSAGCVLANRLSEIKKW-KVLLLEAGIE 152 (567)
Q Consensus 119 DvIVVGsG~aG~~aA~~Lae~~G~-~VlVLE~G~~ 152 (567)
-+.|||+|..|..+|..|+.. |+ +|.|+|..+.
T Consensus 8 KI~IIGaG~vG~~ia~~la~~-gl~~i~LvDi~~~ 41 (321)
T PTZ00082 8 KISLIGSGNIGGVMAYLIVLK-NLGDVVLFDIVKN 41 (321)
T ss_pred EEEEECCCHHHHHHHHHHHhC-CCCeEEEEeCCCc
Confidence 499999999999999999987 85 8999997654
No 465
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=75.73 E-value=3.8 Score=39.78 Aligned_cols=30 Identities=23% Similarity=0.397 Sum_probs=27.3
Q ss_pred ccEEEECCChhHHHHHHHHHhcCCCeEEEEe
Q psy1042 118 FDFIIIGAGSAGCVLANRLSEIKKWKVLLLE 148 (567)
Q Consensus 118 yDvIVVGsG~aG~~aA~~Lae~~G~~VlVLE 148 (567)
--|+|||||..++-=+..|.+. |.+|.|+=
T Consensus 26 ~~VLVVGGG~VA~RK~~~Ll~~-gA~VtVVa 55 (223)
T PRK05562 26 IKVLIIGGGKAAFIKGKTFLKK-GCYVYILS 55 (223)
T ss_pred CEEEEECCCHHHHHHHHHHHhC-CCEEEEEc
Confidence 4599999999999989999998 99999994
No 466
>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively. This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.
Probab=75.70 E-value=3.8 Score=41.58 Aligned_cols=32 Identities=25% Similarity=0.547 Sum_probs=28.3
Q ss_pred EEEECCChhHHHHHHHHHhcCCC-eEEEEecCCC
Q psy1042 120 FIIIGAGSAGCVLANRLSEIKKW-KVLLLEAGIE 152 (567)
Q Consensus 120 vIVVGsG~aG~~aA~~Lae~~G~-~VlVLE~G~~ 152 (567)
|+|||+|.-|+.+|..|+.. |. ++.+++.+..
T Consensus 2 VLIvGaGGLGs~vA~~La~a-GVg~ItlvD~D~V 34 (307)
T cd01486 2 CLLLGAGTLGCNVARNLLGW-GVRHITFVDSGKV 34 (307)
T ss_pred EEEECCCHHHHHHHHHHHHc-CCCeEEEECCCEe
Confidence 79999999999999999998 87 6899986543
No 467
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=75.47 E-value=3.6 Score=37.73 Aligned_cols=32 Identities=25% Similarity=0.348 Sum_probs=25.8
Q ss_pred cEEEECCChhHHHHHHHHHhcCCCeEEEEecCC
Q psy1042 119 DFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGI 151 (567)
Q Consensus 119 DvIVVGsG~aG~~aA~~Lae~~G~~VlVLE~G~ 151 (567)
-++|+|=|-.|..+|.+|... |.+|.|.|..+
T Consensus 25 ~vvV~GYG~vG~g~A~~lr~~-Ga~V~V~e~DP 56 (162)
T PF00670_consen 25 RVVVIGYGKVGKGIARALRGL-GARVTVTEIDP 56 (162)
T ss_dssp EEEEE--SHHHHHHHHHHHHT-T-EEEEE-SSH
T ss_pred EEEEeCCCcccHHHHHHHhhC-CCEEEEEECCh
Confidence 599999999999999999998 99999999754
No 468
>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p. This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.
Probab=75.30 E-value=3.5 Score=46.03 Aligned_cols=35 Identities=23% Similarity=0.498 Sum_probs=30.2
Q ss_pred cccEEEECCChhHHHHHHHHHhcCCC-eEEEEecCCC
Q psy1042 117 TFDFIIIGAGSAGCVLANRLSEIKKW-KVLLLEAGIE 152 (567)
Q Consensus 117 ~yDvIVVGsG~aG~~aA~~Lae~~G~-~VlVLE~G~~ 152 (567)
..-|+|||+|.-|+.+|..|+.. |. ++.+++.+..
T Consensus 338 ~~kVLIvGaGGLGs~VA~~La~~-GVg~ItlVD~D~V 373 (664)
T TIGR01381 338 QLKVLLLGAGTLGCNVARCLIGW-GVRHITFVDNGKV 373 (664)
T ss_pred cCeEEEECCcHHHHHHHHHHHHc-CCCeEEEEcCCEE
Confidence 35699999999999999999999 87 6888887644
No 469
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=74.96 E-value=4.2 Score=38.72 Aligned_cols=33 Identities=24% Similarity=0.420 Sum_probs=29.1
Q ss_pred cccEEEECCChhHHHHHHHHHhcCCC-eEEEEecC
Q psy1042 117 TFDFIIIGAGSAGCVLANRLSEIKKW-KVLLLEAG 150 (567)
Q Consensus 117 ~yDvIVVGsG~aG~~aA~~Lae~~G~-~VlVLE~G 150 (567)
..-|+|||.|..|+.+|..|+.. |. ++.|++-.
T Consensus 19 ~s~VlviG~gglGsevak~L~~~-GVg~i~lvD~d 52 (198)
T cd01485 19 SAKVLIIGAGALGAEIAKNLVLA-GIDSITIVDHR 52 (198)
T ss_pred hCcEEEECCCHHHHHHHHHHHHc-CCCEEEEEECC
Confidence 35799999999999999999998 87 49999854
No 470
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=74.86 E-value=4.4 Score=38.29 Aligned_cols=32 Identities=22% Similarity=0.284 Sum_probs=28.3
Q ss_pred ccEEEECC-ChhHHHHHHHHHhcCCCeEEEEecC
Q psy1042 118 FDFIIIGA-GSAGCVLANRLSEIKKWKVLLLEAG 150 (567)
Q Consensus 118 yDvIVVGs-G~aG~~aA~~Lae~~G~~VlVLE~G 150 (567)
-.++|+|+ |..|..+|..|++. |.+|.++.|.
T Consensus 29 ~~vlVlGgtG~iG~~~a~~l~~~-g~~V~l~~R~ 61 (194)
T cd01078 29 KTAVVLGGTGPVGQRAAVLLARE-GARVVLVGRD 61 (194)
T ss_pred CEEEEECCCCHHHHHHHHHHHHC-CCEEEEEcCC
Confidence 35999996 99999999999998 9999999764
No 471
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=74.81 E-value=4 Score=41.30 Aligned_cols=31 Identities=23% Similarity=0.332 Sum_probs=27.7
Q ss_pred cEEEECCChhHHHHHHHHHhcCCC-eEEEEecC
Q psy1042 119 DFIIIGAGSAGCVLANRLSEIKKW-KVLLLEAG 150 (567)
Q Consensus 119 DvIVVGsG~aG~~aA~~Lae~~G~-~VlVLE~G 150 (567)
-++|+|+|.+|-++|+.|++. |. +|.|+.|.
T Consensus 129 ~vlilGaGGaarAi~~aL~~~-g~~~i~i~nR~ 160 (283)
T PRK14027 129 SVVQVGAGGVGNAVAYALVTH-GVQKLQVADLD 160 (283)
T ss_pred eEEEECCcHHHHHHHHHHHHC-CCCEEEEEcCC
Confidence 589999999999999999998 75 78999875
No 472
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=74.79 E-value=4.1 Score=39.92 Aligned_cols=30 Identities=23% Similarity=0.676 Sum_probs=27.0
Q ss_pred EEEECCChhHHHHHHHHHhcCCC-eEEEEecC
Q psy1042 120 FIIIGAGSAGCVLANRLSEIKKW-KVLLLEAG 150 (567)
Q Consensus 120 vIVVGsG~aG~~aA~~Lae~~G~-~VlVLE~G 150 (567)
|+|||+|..|+.++..|+.. |. ++.|+|..
T Consensus 2 VlvvG~GGlG~eilk~La~~-Gvg~i~ivD~D 32 (234)
T cd01484 2 VLLVGAGGIGCELLKNLALM-GFGQIHVIDMD 32 (234)
T ss_pred EEEECCCHHHHHHHHHHHHc-CCCeEEEEeCC
Confidence 79999999999999999998 76 68888864
No 473
>PRK07233 hypothetical protein; Provisional
Probab=74.76 E-value=4.7 Score=42.95 Aligned_cols=56 Identities=18% Similarity=0.162 Sum_probs=38.5
Q ss_pred hHHHHhcCCCeEEecceEEEEEEeCCCCCCCCccEEEEEEEEeCCEEEEEEcCcEEEEcCCCCccHHHH
Q psy1042 321 IRPIRKKRKNLTILTEAHVTRIICDKTPNKHKKLVAKSVEFFYKKKLRRARAKKEVISSAGAINSPKIL 389 (567)
Q Consensus 321 L~~a~~~~~gv~I~~~t~V~~I~~d~~~~~~~~~rv~GV~~~~~g~~~~v~A~k~VVLAAGa~~Tp~LL 389 (567)
|...+. ..|++|+++++|++|..+ ++ +++++.. +++ ++.++ .||+|+..-..+.||
T Consensus 204 l~~~l~-~~g~~v~~~~~V~~i~~~--~~-----~~~~~~~--~~~--~~~ad-~vI~a~p~~~~~~ll 259 (434)
T PRK07233 204 LAEAIE-ARGGEIRLGTPVTSVVID--GG-----GVTGVEV--DGE--EEDFD-AVISTAPPPILARLV 259 (434)
T ss_pred HHHHHH-hcCceEEeCCCeeEEEEc--CC-----ceEEEEe--CCc--eEECC-EEEECCCHHHHHhhc
Confidence 333444 478999999999999876 33 5666542 332 58896 699999875555543
No 474
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=74.72 E-value=3.4 Score=42.11 Aligned_cols=31 Identities=26% Similarity=0.397 Sum_probs=28.6
Q ss_pred EEEECCChhHHHHHHHHHhcCCCeEEEEecCC
Q psy1042 120 FIIIGAGSAGCVLANRLSEIKKWKVLLLEAGI 151 (567)
Q Consensus 120 vIVVGsG~aG~~aA~~Lae~~G~~VlVLE~G~ 151 (567)
+-|||+|..|.-.|..+|.. |+.|.+.|...
T Consensus 6 v~ViGaG~MG~gIA~~~A~~-G~~V~l~D~~~ 36 (307)
T COG1250 6 VAVIGAGVMGAGIAAVFALA-GYDVVLKDISP 36 (307)
T ss_pred EEEEcccchhHHHHHHHhhc-CCceEEEeCCH
Confidence 78999999999999999996 99999999763
No 475
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=74.47 E-value=3.9 Score=44.81 Aligned_cols=34 Identities=21% Similarity=0.251 Sum_probs=29.1
Q ss_pred cccEEEECCChhHHHHHHHHHhcCCCeEEEEecCC
Q psy1042 117 TFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGI 151 (567)
Q Consensus 117 ~yDvIVVGsG~aG~~aA~~Lae~~G~~VlVLE~G~ 151 (567)
.-.|+|+|+|.+|+.++..+... |.+|.++|..+
T Consensus 165 g~kVlViGaG~iGL~Ai~~Ak~l-GA~V~a~D~~~ 198 (509)
T PRK09424 165 PAKVLVIGAGVAGLAAIGAAGSL-GAIVRAFDTRP 198 (509)
T ss_pred CCEEEEECCcHHHHHHHHHHHHC-CCEEEEEeCCH
Confidence 45799999999999988877777 99999999653
No 476
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=74.46 E-value=3.6 Score=44.37 Aligned_cols=33 Identities=36% Similarity=0.542 Sum_probs=29.9
Q ss_pred cEEEECCChhHHHHHHHHHhcCCCeEEEEecCCC
Q psy1042 119 DFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIE 152 (567)
Q Consensus 119 DvIVVGsG~aG~~aA~~Lae~~G~~VlVLE~G~~ 152 (567)
.++|||+|..|..+|..|.+. |..|.++|+.+.
T Consensus 2 ~viIiG~G~ig~~~a~~L~~~-g~~v~vid~~~~ 34 (453)
T PRK09496 2 KIIIVGAGQVGYTLAENLSGE-NNDVTVIDTDEE 34 (453)
T ss_pred EEEEECCCHHHHHHHHHHHhC-CCcEEEEECCHH
Confidence 489999999999999999998 999999998543
No 477
>cd01490 Ube1_repeat2 Ubiquitin activating enzyme (E1), repeat 2. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the second repeat of Ub-E1.
Probab=74.45 E-value=3.7 Score=43.96 Aligned_cols=32 Identities=19% Similarity=0.441 Sum_probs=28.8
Q ss_pred EEEECCChhHHHHHHHHHhcCCC------eEEEEecCCC
Q psy1042 120 FIIIGAGSAGCVLANRLSEIKKW------KVLLLEAGIE 152 (567)
Q Consensus 120 vIVVGsG~aG~~aA~~Lae~~G~------~VlVLE~G~~ 152 (567)
|+|||+|..||-++..||.. |. ++.|+|....
T Consensus 2 VlvVGaGGlGcE~lKnLal~-Gv~~g~~G~I~IvD~D~I 39 (435)
T cd01490 2 VFLVGAGAIGCELLKNFALM-GVGTGESGEITVTDMDNI 39 (435)
T ss_pred EEEECCCHHHHHHHHHHHHc-CCCcCCCCeEEEECCCCc
Confidence 79999999999999999998 87 8999996644
No 478
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=74.44 E-value=4.6 Score=33.07 Aligned_cols=32 Identities=34% Similarity=0.459 Sum_probs=27.8
Q ss_pred EEEECCChhHHHHHHHHHhcCC---CeEEEE-ecCCC
Q psy1042 120 FIIIGAGSAGCVLANRLSEIKK---WKVLLL-EAGIE 152 (567)
Q Consensus 120 vIVVGsG~aG~~aA~~Lae~~G---~~VlVL-E~G~~ 152 (567)
+.|||+|-.|.+.|..|.+. | .+|+++ ++.+.
T Consensus 2 I~iIG~G~mg~al~~~l~~~-g~~~~~v~~~~~r~~~ 37 (96)
T PF03807_consen 2 IGIIGAGNMGSALARGLLAS-GIKPHEVIIVSSRSPE 37 (96)
T ss_dssp EEEESTSHHHHHHHHHHHHT-TS-GGEEEEEEESSHH
T ss_pred EEEECCCHHHHHHHHHHHHC-CCCceeEEeeccCcHH
Confidence 57899999999999999998 9 899976 87543
No 479
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=74.34 E-value=4.2 Score=43.89 Aligned_cols=33 Identities=18% Similarity=0.325 Sum_probs=29.8
Q ss_pred cEEEECCChhHHHHHHHHHhcCCCeEEEEecCCC
Q psy1042 119 DFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIE 152 (567)
Q Consensus 119 DvIVVGsG~aG~~aA~~Lae~~G~~VlVLE~G~~ 152 (567)
-++|+|.|.+|+++|..|++. |.+|.+.|....
T Consensus 7 ~~~v~G~g~~G~~~a~~l~~~-g~~v~~~d~~~~ 39 (445)
T PRK04308 7 KILVAGLGGTGISMIAYLRKN-GAEVAAYDAELK 39 (445)
T ss_pred EEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCCC
Confidence 489999999999999999998 999999997543
No 480
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=74.31 E-value=4.1 Score=41.01 Aligned_cols=32 Identities=19% Similarity=0.385 Sum_probs=29.1
Q ss_pred cEEEECCChhHHHHHHHHHhcCC-CeEEEEecCC
Q psy1042 119 DFIIIGAGSAGCVLANRLSEIKK-WKVLLLEAGI 151 (567)
Q Consensus 119 DvIVVGsG~aG~~aA~~Lae~~G-~~VlVLE~G~ 151 (567)
.++|+|+|.+|.++|..|++. | .+|.|+.|..
T Consensus 125 ~vlVlGaGg~a~ai~~aL~~~-g~~~V~v~~R~~ 157 (278)
T PRK00258 125 RILILGAGGAARAVILPLLDL-GVAEITIVNRTV 157 (278)
T ss_pred EEEEEcCcHHHHHHHHHHHHc-CCCEEEEEeCCH
Confidence 589999999999999999998 8 7899998854
No 481
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=74.28 E-value=4 Score=40.98 Aligned_cols=32 Identities=13% Similarity=0.186 Sum_probs=28.6
Q ss_pred cEEEECCChhHHHHHHHHHhcCCC-eEEEEecCC
Q psy1042 119 DFIIIGAGSAGCVLANRLSEIKKW-KVLLLEAGI 151 (567)
Q Consensus 119 DvIVVGsG~aG~~aA~~Lae~~G~-~VlVLE~G~ 151 (567)
.++|+|+|.++.++|+.|++. |. +|.|+.|-.
T Consensus 124 ~vlilGaGGaarAi~~aL~~~-g~~~i~i~nR~~ 156 (272)
T PRK12550 124 VVALRGSGGMAKAVAAALRDA-GFTDGTIVARNE 156 (272)
T ss_pred eEEEECCcHHHHHHHHHHHHC-CCCEEEEEeCCH
Confidence 599999999999999999998 76 599998854
No 482
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=74.24 E-value=4.1 Score=43.57 Aligned_cols=32 Identities=25% Similarity=0.342 Sum_probs=29.3
Q ss_pred cEEEECCChhHHHHHHHHHhcCCCeEEEEecCC
Q psy1042 119 DFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGI 151 (567)
Q Consensus 119 DvIVVGsG~aG~~aA~~Lae~~G~~VlVLE~G~ 151 (567)
-++|||.|..|..+|..|... |.+|+++|..+
T Consensus 214 ~VlViG~G~IG~~vA~~lr~~-Ga~ViV~d~dp 245 (425)
T PRK05476 214 VVVVAGYGDVGKGCAQRLRGL-GARVIVTEVDP 245 (425)
T ss_pred EEEEECCCHHHHHHHHHHHhC-CCEEEEEcCCc
Confidence 599999999999999999998 99999999653
No 483
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=74.13 E-value=3.4 Score=47.67 Aligned_cols=33 Identities=24% Similarity=0.321 Sum_probs=30.1
Q ss_pred cEEEECCChhHHHHHHHHHhcCCCeEEEEecCCC
Q psy1042 119 DFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIE 152 (567)
Q Consensus 119 DvIVVGsG~aG~~aA~~Lae~~G~~VlVLE~G~~ 152 (567)
-|.|||+|..|.-.|..++.+ |+.|.|+|..+.
T Consensus 337 ~v~ViGaG~MG~gIA~~~a~~-G~~V~l~d~~~~ 369 (737)
T TIGR02441 337 TLAVLGAGLMGAGIAQVSVDK-GLKTVLKDATPA 369 (737)
T ss_pred EEEEECCCHhHHHHHHHHHhC-CCcEEEecCCHH
Confidence 499999999999999999999 999999997643
No 484
>KOG2304|consensus
Probab=74.10 E-value=3.2 Score=39.94 Aligned_cols=34 Identities=26% Similarity=0.381 Sum_probs=30.5
Q ss_pred ccEEEECCChhHHHHHHHHHhcCCCeEEEEecCCC
Q psy1042 118 FDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIE 152 (567)
Q Consensus 118 yDvIVVGsG~aG~~aA~~Lae~~G~~VlVLE~G~~ 152 (567)
--|-|||+|..|+-.|.-.|.. |+.|.|+++...
T Consensus 12 ~~V~ivGaG~MGSGIAQv~a~s-g~~V~l~d~~~~ 45 (298)
T KOG2304|consen 12 KNVAIVGAGQMGSGIAQVAATS-GLNVWLVDANED 45 (298)
T ss_pred cceEEEcccccchhHHHHHHhc-CCceEEecCCHH
Confidence 4699999999999999999998 999999998644
No 485
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=74.07 E-value=4.3 Score=41.31 Aligned_cols=32 Identities=22% Similarity=0.340 Sum_probs=29.7
Q ss_pred ccEEEECCChhHHHHHHHHHhcCCCeEEEEecC
Q psy1042 118 FDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAG 150 (567)
Q Consensus 118 yDvIVVGsG~aG~~aA~~Lae~~G~~VlVLE~G 150 (567)
.-++|||.|.+|..+|..|... |.+|.++++-
T Consensus 153 ~kvlViG~G~iG~~~a~~L~~~-Ga~V~v~~r~ 184 (296)
T PRK08306 153 SNVLVLGFGRTGMTLARTLKAL-GANVTVGARK 184 (296)
T ss_pred CEEEEECCcHHHHHHHHHHHHC-CCEEEEEECC
Confidence 4699999999999999999998 9999999875
No 486
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=74.02 E-value=4.2 Score=41.07 Aligned_cols=32 Identities=19% Similarity=0.368 Sum_probs=28.4
Q ss_pred ccEEEECCChhHHHHHHHHHhcCCC-eEEEEecC
Q psy1042 118 FDFIIIGAGSAGCVLANRLSEIKKW-KVLLLEAG 150 (567)
Q Consensus 118 yDvIVVGsG~aG~~aA~~Lae~~G~-~VlVLE~G 150 (567)
..++|||+|.+|-++|..|++. |. +|.|+.|.
T Consensus 126 k~vlvlGaGGaarai~~aL~~~-G~~~i~I~nRt 158 (282)
T TIGR01809 126 FRGLVIGAGGTSRAAVYALASL-GVTDITVINRN 158 (282)
T ss_pred ceEEEEcCcHHHHHHHHHHHHc-CCCeEEEEeCC
Confidence 3699999999999999999998 76 79999875
No 487
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=73.98 E-value=4.2 Score=42.94 Aligned_cols=34 Identities=21% Similarity=0.304 Sum_probs=30.0
Q ss_pred cccEEEECCChhHHHHHHHHHhcCCC-eEEEEecCC
Q psy1042 117 TFDFIIIGAGSAGCVLANRLSEIKKW-KVLLLEAGI 151 (567)
Q Consensus 117 ~yDvIVVGsG~aG~~aA~~Lae~~G~-~VlVLE~G~ 151 (567)
..-|+|||+|..|+.+|..|+.. |. ++.|++...
T Consensus 135 ~~~VlvvG~GG~Gs~ia~~La~~-Gvg~i~lvD~d~ 169 (376)
T PRK08762 135 EARVLLIGAGGLGSPAALYLAAA-GVGTLGIVDHDV 169 (376)
T ss_pred cCcEEEECCCHHHHHHHHHHHHc-CCCeEEEEeCCE
Confidence 45799999999999999999999 87 799999653
No 488
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=73.94 E-value=4.9 Score=36.85 Aligned_cols=32 Identities=22% Similarity=0.421 Sum_probs=27.2
Q ss_pred cEEEECCChhHHHHHHHHHhcCCCeEEEEecCC
Q psy1042 119 DFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGI 151 (567)
Q Consensus 119 DvIVVGsG~aG~~aA~~Lae~~G~~VlVLE~G~ 151 (567)
.+-|||-|..|...|.+|+++ |++|.+.++.+
T Consensus 3 ~Ig~IGlG~mG~~~a~~L~~~-g~~v~~~d~~~ 34 (163)
T PF03446_consen 3 KIGFIGLGNMGSAMARNLAKA-GYEVTVYDRSP 34 (163)
T ss_dssp EEEEE--SHHHHHHHHHHHHT-TTEEEEEESSH
T ss_pred EEEEEchHHHHHHHHHHHHhc-CCeEEeeccch
Confidence 478999999999999999998 99999999753
No 489
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=73.75 E-value=4.7 Score=38.37 Aligned_cols=33 Identities=18% Similarity=0.293 Sum_probs=28.9
Q ss_pred cccEEEECCChhHHHHHHHHHhcCCC-eEEEEecC
Q psy1042 117 TFDFIIIGAGSAGCVLANRLSEIKKW-KVLLLEAG 150 (567)
Q Consensus 117 ~yDvIVVGsG~aG~~aA~~Lae~~G~-~VlVLE~G 150 (567)
..-|+|||.|..|+.+|..|+.. |. ++.|++-.
T Consensus 21 ~s~VlIiG~gglG~evak~La~~-GVg~i~lvD~d 54 (197)
T cd01492 21 SARILLIGLKGLGAEIAKNLVLS-GIGSLTILDDR 54 (197)
T ss_pred hCcEEEEcCCHHHHHHHHHHHHc-CCCEEEEEECC
Confidence 35699999999999999999998 87 58888854
No 490
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=73.63 E-value=2.9 Score=42.80 Aligned_cols=34 Identities=35% Similarity=0.365 Sum_probs=29.3
Q ss_pred ccEEEECCChhHHHHHHHHHhcCCCeEEEEecCCC
Q psy1042 118 FDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIE 152 (567)
Q Consensus 118 yDvIVVGsG~aG~~aA~~Lae~~G~~VlVLE~G~~ 152 (567)
-||.|||||-.|.-+|.-||-- =..|.|||=.+.
T Consensus 355 K~VAVIGGGNSGvEAAIDLAGi-v~hVtllEF~~e 388 (520)
T COG3634 355 KRVAVIGGGNSGVEAAIDLAGI-VEHVTLLEFAPE 388 (520)
T ss_pred ceEEEECCCcchHHHHHhHHhh-hheeeeeecchh
Confidence 4899999999999999999975 568999995543
No 491
>PRK06057 short chain dehydrogenase; Provisional
Probab=73.39 E-value=4.7 Score=39.62 Aligned_cols=31 Identities=23% Similarity=0.239 Sum_probs=28.1
Q ss_pred cEEEECC-ChhHHHHHHHHHhcCCCeEEEEecC
Q psy1042 119 DFIIIGA-GSAGCVLANRLSEIKKWKVLLLEAG 150 (567)
Q Consensus 119 DvIVVGs-G~aG~~aA~~Lae~~G~~VlVLE~G 150 (567)
-|+|+|+ |..|..+|.+|++. |++|+++.+.
T Consensus 9 ~vlItGasggIG~~~a~~l~~~-G~~v~~~~r~ 40 (255)
T PRK06057 9 VAVITGGGSGIGLATARRLAAE-GATVVVGDID 40 (255)
T ss_pred EEEEECCCchHHHHHHHHHHHc-CCEEEEEeCC
Confidence 3899998 89999999999998 9999999875
No 492
>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional
Probab=73.14 E-value=4.5 Score=40.42 Aligned_cols=31 Identities=19% Similarity=0.225 Sum_probs=27.2
Q ss_pred cEEEECCC---hhHHHHHHHHHhcCCCeEEEEecC
Q psy1042 119 DFIIIGAG---SAGCVLANRLSEIKKWKVLLLEAG 150 (567)
Q Consensus 119 DvIVVGsG---~aG~~aA~~Lae~~G~~VlVLE~G 150 (567)
=+||.|++ ..|..+|.+|+++ |++|+++.+.
T Consensus 9 ~~lVTGas~~~GIG~aiA~~la~~-Ga~V~~~~r~ 42 (271)
T PRK06505 9 RGLIMGVANDHSIAWGIAKQLAAQ-GAELAFTYQG 42 (271)
T ss_pred EEEEeCCCCCCcHHHHHHHHHHhC-CCEEEEecCc
Confidence 38899987 6999999999999 9999998764
No 493
>KOG2018|consensus
Probab=73.14 E-value=4.1 Score=41.02 Aligned_cols=28 Identities=29% Similarity=0.526 Sum_probs=25.6
Q ss_pred EEEECCChhHHHHHHHHHhcCCC-eEEEEe
Q psy1042 120 FIIIGAGSAGCVLANRLSEIKKW-KVLLLE 148 (567)
Q Consensus 120 vIVVGsG~aG~~aA~~Lae~~G~-~VlVLE 148 (567)
|||||+|..|+-+|.-|++. |. ++.|++
T Consensus 77 VVVVG~GgVGSwv~nmL~RS-G~qKi~iVD 105 (430)
T KOG2018|consen 77 VVVVGAGGVGSWVANMLLRS-GVQKIRIVD 105 (430)
T ss_pred EEEEecCchhHHHHHHHHHh-cCceEEEec
Confidence 89999999999999999998 65 788887
No 494
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=73.13 E-value=4.7 Score=39.48 Aligned_cols=32 Identities=22% Similarity=0.342 Sum_probs=28.7
Q ss_pred ccEEEECCChhHHHHHHHHHhcCCC-eEEEEecC
Q psy1042 118 FDFIIIGAGSAGCVLANRLSEIKKW-KVLLLEAG 150 (567)
Q Consensus 118 yDvIVVGsG~aG~~aA~~Lae~~G~-~VlVLE~G 150 (567)
.-|+|||.|..|+.+|..|++. |. ++.|+|..
T Consensus 12 ~~VlVvG~GGvGs~va~~Lar~-GVg~i~LvD~D 44 (231)
T cd00755 12 AHVAVVGLGGVGSWAAEALARS-GVGKLTLIDFD 44 (231)
T ss_pred CCEEEECCCHHHHHHHHHHHHc-CCCEEEEECCC
Confidence 4699999999999999999998 87 79999854
No 495
>PRK07774 short chain dehydrogenase; Provisional
Probab=72.85 E-value=5 Score=39.12 Aligned_cols=31 Identities=26% Similarity=0.322 Sum_probs=28.3
Q ss_pred cEEEECC-ChhHHHHHHHHHhcCCCeEEEEecC
Q psy1042 119 DFIIIGA-GSAGCVLANRLSEIKKWKVLLLEAG 150 (567)
Q Consensus 119 DvIVVGs-G~aG~~aA~~Lae~~G~~VlVLE~G 150 (567)
-++|.|+ |..|..+|..|+++ |.+|+++.|.
T Consensus 8 ~vlItGasg~iG~~la~~l~~~-g~~vi~~~r~ 39 (250)
T PRK07774 8 VAIVTGAAGGIGQAYAEALARE-GASVVVADIN 39 (250)
T ss_pred EEEEECCCchHHHHHHHHHHHC-CCEEEEEeCC
Confidence 3899997 99999999999998 9999999875
No 496
>PRK07326 short chain dehydrogenase; Provisional
Probab=72.72 E-value=4.7 Score=38.93 Aligned_cols=30 Identities=23% Similarity=0.329 Sum_probs=26.9
Q ss_pred EEEECC-ChhHHHHHHHHHhcCCCeEEEEecC
Q psy1042 120 FIIIGA-GSAGCVLANRLSEIKKWKVLLLEAG 150 (567)
Q Consensus 120 vIVVGs-G~aG~~aA~~Lae~~G~~VlVLE~G 150 (567)
++|+|+ |..|..+|.+|++. |.+|+++.|.
T Consensus 9 ilItGatg~iG~~la~~l~~~-g~~V~~~~r~ 39 (237)
T PRK07326 9 ALITGGSKGIGFAIAEALLAE-GYKVAITARD 39 (237)
T ss_pred EEEECCCCcHHHHHHHHHHHC-CCEEEEeeCC
Confidence 788885 89999999999998 9999999864
No 497
>PRK07831 short chain dehydrogenase; Provisional
Probab=72.67 E-value=5 Score=39.58 Aligned_cols=32 Identities=22% Similarity=0.250 Sum_probs=27.8
Q ss_pred cEEEECC-C-hhHHHHHHHHHhcCCCeEEEEecCC
Q psy1042 119 DFIIIGA-G-SAGCVLANRLSEIKKWKVLLLEAGI 151 (567)
Q Consensus 119 DvIVVGs-G-~aG~~aA~~Lae~~G~~VlVLE~G~ 151 (567)
-++|.|+ | ..|..+|..|++. |.+|+++++..
T Consensus 19 ~vlItG~sg~gIG~~ia~~l~~~-G~~V~~~~~~~ 52 (262)
T PRK07831 19 VVLVTAAAGTGIGSATARRALEE-GARVVISDIHE 52 (262)
T ss_pred EEEEECCCcccHHHHHHHHHHHc-CCEEEEEeCCH
Confidence 4899997 5 6999999999998 99999998753
No 498
>PLN02494 adenosylhomocysteinase
Probab=72.59 E-value=5 Score=43.32 Aligned_cols=33 Identities=21% Similarity=0.171 Sum_probs=29.7
Q ss_pred ccEEEECCChhHHHHHHHHHhcCCCeEEEEecCC
Q psy1042 118 FDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGI 151 (567)
Q Consensus 118 yDvIVVGsG~aG~~aA~~Lae~~G~~VlVLE~G~ 151 (567)
-.++|||.|..|..+|.+|... |.+|+++|+.+
T Consensus 255 KtVvViGyG~IGr~vA~~aka~-Ga~VIV~e~dp 287 (477)
T PLN02494 255 KVAVICGYGDVGKGCAAAMKAA-GARVIVTEIDP 287 (477)
T ss_pred CEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCc
Confidence 3699999999999999999887 99999999754
No 499
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=72.58 E-value=4.4 Score=43.95 Aligned_cols=32 Identities=19% Similarity=0.258 Sum_probs=29.6
Q ss_pred cEEEECCChhHHHHHHHHHhcCCCeEEEEecCC
Q psy1042 119 DFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGI 151 (567)
Q Consensus 119 DvIVVGsG~aG~~aA~~Lae~~G~~VlVLE~G~ 151 (567)
-+.|+|.|.+|.++|..|.+. |++|.+.|+.+
T Consensus 16 ~i~v~G~G~sG~a~a~~L~~~-G~~V~~~D~~~ 47 (458)
T PRK01710 16 KVAVVGIGVSNIPLIKFLVKL-GAKVTAFDKKS 47 (458)
T ss_pred eEEEEcccHHHHHHHHHHHHC-CCEEEEECCCC
Confidence 499999999999999999998 99999999765
No 500
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=72.07 E-value=4 Score=45.52 Aligned_cols=35 Identities=17% Similarity=0.369 Sum_probs=31.4
Q ss_pred cccEEEECCChhHHHHHHHHHhcCCCeEEEEecCCC
Q psy1042 117 TFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIE 152 (567)
Q Consensus 117 ~yDvIVVGsG~aG~~aA~~Lae~~G~~VlVLE~G~~ 152 (567)
+-.+||||.|..|-.+|.+|.++ |.+|+++|+.+.
T Consensus 417 ~~hiiI~G~G~~G~~la~~L~~~-g~~vvvId~d~~ 451 (558)
T PRK10669 417 CNHALLVGYGRVGSLLGEKLLAA-GIPLVVIETSRT 451 (558)
T ss_pred CCCEEEECCChHHHHHHHHHHHC-CCCEEEEECCHH
Confidence 45799999999999999999998 999999997543
Done!