RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy1042
(567 letters)
>gnl|CDD|235000 PRK02106, PRK02106, choline dehydrogenase; Validated.
Length = 560
Score = 342 bits (881), Expect = e-111
Identities = 172/450 (38%), Positives = 228/450 (50%), Gaps = 59/450 (13%)
Query: 115 DMTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIEEP---FFADVP-GLAPLISRSN 170
M +D+IIIGAGSAGCVLANRLSE VLLLEAG + FF +P LA +
Sbjct: 3 TMEYDYIIIGAGSAGCVLANRLSEDPDVSVLLLEAGGPDYRWDFFIQMPAALAFPLQGKR 62
Query: 171 IDWNYMTMPEPHACKARPNGR-CYWARGKVMGGSSTINYMIYARGNAEDYDEWEAM-GNE 228
+W Y T PEPH N R RGKV+GGSS+IN M+Y RGNA DYD W + G E
Sbjct: 63 YNWAYETEPEPHM-----NNRRMECPRGKVLGGSSSINGMVYIRGNAMDYDNWAELPGLE 117
Query: 229 GWGYDEVLEYFKKSEDNEDKEIYHKNPEYHGKGGYQTVEWLPYADKNLPV---LIKAWKE 285
GW Y + L YFKK+E + E +Y G G +V N P+ ++A +
Sbjct: 118 GWSYADCLPYFKKAETRDGGE-----DDYRGGDGPLSVTR-GKPGTN-PLFQAFVEAGVQ 170
Query: 286 KGYPE-RDLNAENQ--IGVMHLQTTTRHGERLSTNGAFIRPIRKKRKNLTILTEAHVTRI 342
GYP DLN Q G M T +G R S A++ P KR NLTI+T A RI
Sbjct: 171 AGYPRTDDLNGYQQEGFGPMDR--TVTNGRRWSAARAYLDPA-LKRPNLTIVTHALTDRI 227
Query: 343 ICDKTPNKHKKLVAKSVEFFYKKKLRRARAKKEVISSAGAINSPKILMLSGIGPKDHLTS 402
+ + K+ A VE+ ARA++EVI SAGAINSP++L LSGIGP +HL
Sbjct: 228 LFEG-----KR--AVGVEYERGGGRETARARREVILSAGAINSPQLLQLSGIGPAEHLKE 280
Query: 403 LNIKTLVDLK-VGHNLQDHL------TSDGIVIAFPKTATDRMYKKKVSDAFEYKESRCG 455
L I + DL VG NLQDHL V +P + + K A E+ + G
Sbjct: 281 LGIPVVHDLPGVGENLQDHLEVYIQYECKQPVSLYPAL---KWWNKPKIGA-EWLFTGTG 336
Query: 456 PLASTGPLQCGVFAKTKLADSLDVPDIQFHHDPMSVRDWITNPVNASSTNMSPFAYYDGI 515
AS + G F +++ +D P+IQ+H P+++R +N V G
Sbjct: 337 LGASNH-FEAGGFIRSR--AGVDWPNIQYHFLPVAIRYDGSNAVKG-----------HGF 382
Query: 516 TVRPILLKPKSRGYIQLNATDPLWGPPLIF 545
++ SRG ++L + DP P ++F
Sbjct: 383 QAHVGPMRSPSRGSVKLKSADPRAHPSILF 412
>gnl|CDD|225186 COG2303, BetA, Choline dehydrogenase and related flavoproteins
[Amino acid transport and metabolism].
Length = 542
Score = 295 bits (758), Expect = 2e-93
Identities = 159/459 (34%), Positives = 221/459 (48%), Gaps = 43/459 (9%)
Query: 113 DDDMTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIE-EPFFADVP-GLAPLISRSN 170
+ M +D++I+G+GSAG VLA RLS+ VL+LEAG +P A L++
Sbjct: 3 EMKMEYDYVIVGSGSAGSVLAARLSD-AGLSVLVLEAGGPDRRPLIQMPAAYAFLMNGPR 61
Query: 171 IDWNYMTMPEPHACKARPNGRCYWARGKVMGGSSTINYMIYARGNAEDYDEWEAM-GNEG 229
DW + T PEPH W RGKV+GGSS+IN M+Y RG+ ED+D W G G
Sbjct: 62 YDWGFRTEPEPH----LRGRELAWPRGKVLGGSSSINGMVYVRGHPEDFDAWAQESGAPG 117
Query: 230 WGYDEVLEYFKKSEDNEDKEIYHKNPEYHGKGGYQTVEWLPYADKNLPVLIKAWKEKGYP 289
W YD+VL YFK++ED +HG GG V + I+A ++ G+P
Sbjct: 118 WPYDDVLPYFKRAEDLLGVGGQ-DLRTWHGGGGPLPVSPPRSPNPIARAFIEAGEQLGFP 176
Query: 290 E-RDLNAENQIGVMHLQTTTRHGERLSTNGAFIRPIRKKRKNLTILTEAHVTRIICDKTP 348
D N +Q G T +G R S A+++P K R NLT+LT A V RI+ +
Sbjct: 177 TTPDPNGADQEGFGPYCVTICNGRRWSAARAYLKPALK-RPNLTLLTGARVRRILLEG-- 233
Query: 349 NKHKKLVAKSVEFFYKKK--LRRARAKKEVISSAGAINSPKILMLSGIGPKDHLTSLNIK 406
+ A VE + A A +EV+ +AGAINSPK+L+LSGIGP DHL I
Sbjct: 234 ---DR--AVGVEVEIGDGGTIETAVAAREVVLAAGAINSPKLLLLSGIGPADHLLEHGID 288
Query: 407 TLVDLK-VGHNLQDHLTSDGIVIAFPKTATDRMYK---KKVSDAFEYKESRCGPLASTGP 462
+ L VG NLQDHL A T D + K A Y +R GP A+
Sbjct: 289 VVGRLPGVGQNLQDHLEIYVAFEATEPTN-DSVLSLFSKLGIGADRYLLTRDGPGATN-H 346
Query: 463 LQCGVFAKTKLADSLDVPDIQFHHDPMSVRDWITNPVNASSTNMSPFAYYDGITVRPILL 522
+ G + + + PD Q+H P+ + G T+ +
Sbjct: 347 FEGGFV---RSGPAGEYPDGQYHFAPLPLAIR-------------AAGAEHGFTLHVGPM 390
Query: 523 KPKSRGYIQLNATDPLWGPPLIFPKFFTKKPDLDVFVAG 561
+PKSRG + L + DP P+I P + + + D +F AG
Sbjct: 391 RPKSRGSVTLRSPDPD-NRPVIDPNYLSAEGDRAIFRAG 428
>gnl|CDD|233581 TIGR01810, betA, choline dehydrogenase. Choline dehydrogenase
catalyzes the conversion of exogenously supplied choline
into the intermediate glycine betaine aldehyde, as part
of a two-step oxidative reaction leading to the
formation of osmoprotectant betaine. This enzymatic
system can be found in both gram-positive and
gram-negative bacteria. As in Escherichia coli ,
Staphylococcus xylosus , and Sinorhizobium meliloti,
this enzyme is found associated in a transciptionally
co-induced gene cluster with betaine aldehyde
dehydrogenase, the second catalytic enzyme in this
reaction. Other gram-positive organisms have been shown
to employ a different enzymatic system, utlizing a
soluable choline oxidase or type III alcohol
dehydrogenase instead of choline dehydrogenase. This
enzyme is a member of the GMC oxidoreductase family
(pfam00732 and pfam05199), sharing a common
evoluntionary origin and enzymatic reaction with alcohol
dehydrogenase. Outgrouping from this model, Caulobacter
crescentus shares sequence homology with choline
dehydrogenase, yet other genes participating in this
enzymatic reaction have not currently been identified
[Cellular processes, Adaptations to atypical
conditions].
Length = 532
Score = 234 bits (598), Expect = 5e-70
Identities = 155/439 (35%), Positives = 212/439 (48%), Gaps = 46/439 (10%)
Query: 119 DFIIIGAGSAGCVLANRLSEIKKWKVLLLEAG---IEEPFFADVPG-LAPLISRSNIDWN 174
D+IIIG GSAG VLA RLSE VL+LEAG +P LA +W
Sbjct: 1 DYIIIGGGSAGSVLAGRLSEDVSNSVLVLEAGGSDYPWDLLIQMPAALAYPAGNKRYNWI 60
Query: 175 YMTMPEPHACKARPNGRCYWARGKVMGGSSTINYMIYARGNAEDYDEW-EAMGNEGWGYD 233
Y T PEPH N R ARGKV+GGSS+IN MIY RGN DY++W + G E W Y
Sbjct: 61 YETEPEPHM----NNRRVGHARGKVLGGSSSINGMIYQRGNPMDYEKWAKPEGMESWDYA 116
Query: 234 EVLEYFKKSEDNEDKEIYHKNPEYHGKGGYQTVEWLPYADKNLPVLIKAWKEKGYPER-D 292
+ L Y+K+ E E P Y G G V P + I+A E GY + D
Sbjct: 117 DCLPYYKRLETTFGGE----KP-YRGHDGPIKVRRGPADNPLFQAFIEAGVEAGYNKTPD 171
Query: 293 LNAENQIGVMHLQTTTRHGERLSTNGAFIRPIRKKRKNLTILTEAHVTRIICDKTPNKHK 352
+N Q G + +T +G R+S A++ P KR NL + T A VT+I + N+
Sbjct: 172 VNGFRQEGFGPMDSTVHNGRRVSAARAYLHPA-MKRPNLEVQTRAFVTKINFEG--NR-- 226
Query: 353 KLVAKSVEFFYKKKLRRARAKKEVISSAGAINSPKILMLSGIGPKDHLTSLNIKTLVDLK 412
A VEF + A KEVI SAGAINSP++L LSGIG +HL L I+ + L
Sbjct: 227 ---ATGVEFKKGGRKEHTEANKEVILSAGAINSPQLLQLSGIGDAEHLRELGIEPRIHLP 283
Query: 413 -VGHNLQDHLTSDGIVIAFPKTATDRMYK-----KKVSDAFEYKESRCGPLASTGPLQCG 466
VG NLQDHL + + +Y K+ ++ R G ++ + G
Sbjct: 284 GVGENLQDHLE---VYVQHACKQPVSLYPSLNWLKQPFIGAQWLFGRKG-AGASNHFEGG 339
Query: 467 VFAKTKLADSLDVPDIQFHHDPMSVRDWITNPVNASSTNMSPFAYYDGITVRPILLKPKS 526
F ++ D +D P+IQ+H P+++R T A G V + S
Sbjct: 340 GFVRS--NDDVDYPNIQYHFLPVAIRYDGTKAPKAH-----------GFQVHVGPMYSNS 386
Query: 527 RGYIQLNATDPLWGPPLIF 545
RG++++ + DP P ++F
Sbjct: 387 RGHVKIKSKDPFEKPEIVF 405
>gnl|CDD|234421 TIGR03970, Rv0697, dehydrogenase, Rv0697 family. This model
describes a set of dehydrogenases belonging to the
glucose-methanol-choline oxidoreductase (GMC
oxidoreductase) family. Members of the present family
are restricted to Actinobacterial genome contexts
containing also members of families TIGR03962 and
TIGR03969 (the mycofactocin system), and are proposed to
be uniform in function.
Length = 487
Score = 171 bits (434), Expect = 5e-47
Identities = 126/456 (27%), Positives = 181/456 (39%), Gaps = 82/456 (17%)
Query: 119 DFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIEEPFFADVPGLA---------PLISRS 169
D +++G GSAGCV+A RLSE V +LEAG P + D L P+ S
Sbjct: 2 DVLVVGGGSAGCVVAARLSEDPSCTVTVLEAG---PGYRDPSRLPAQLTDGLRLPIGPAS 58
Query: 170 NIDWNYMTMPEPHACKARPNGRCYWARGKVMGGSSTINYMIYARGNAEDYDEWEAMGNEG 229
+ W Y P RG+V+GGS +N + R D+D W G
Sbjct: 59 PVVWRY-----GVELTDGPRRASAIVRGRVLGGSGAVNGGYFCRALPADFDAW---PIPG 110
Query: 230 WGYDEVLEYFKKSEDNEDKEIYHKNPEYHGKGGYQTVEWLPYADKNLPVLIKAWKEKGYP 289
W +D+VL +F+ E + D + HG G V D + A G+
Sbjct: 111 WSWDDVLPHFRAIETDLDFD-----GPLHGTAGPIPVRRTAELDGISAAFVAAALGAGFG 165
Query: 290 ER-DLNA---ENQIGVMHLQTTTRHGERLSTNGAFIRPIRKKRKNLTILTEAHVTRIICD 345
DLN + GV + G R+ST A++ P K R NLT+ + V RI+
Sbjct: 166 WIADLNGSGPDAPTGVGAVPLNVDGGRRVSTAVAYLLPALK-RPNLTVEADTRVVRILFS 224
Query: 346 KTPNKHKKLVAKSVEFFYKKKLRRARAKKEVISSAGAINSPKILMLSGIGPKDHLTSLNI 405
T A VE R RA + V+ AGA+ S +L+LSGIGP + L + I
Sbjct: 225 GTR-------AVGVEVLGDGGPRTLRADR-VVLCAGAVESAHLLLLSGIGPAEQLRAAGI 276
Query: 406 KTLVDLKVGHNLQDHLTSDGIVIAFPKTATDRMYKKKVSDAFEYKESRCGPLASTGPLQC 465
++DL VG + DH + + T T P+
Sbjct: 277 AVVLDLPVGSDFVDH-PEWVLPYRWRPTHD---------------------RPDTSPV-- 312
Query: 466 GVFAKTKLADSLDVPDIQFHHDPMSVRDWITNPVNASSTNMSPFAYYDGITVRPILLKPK 525
L L+ DI+ +R P A T + P + D + L++P
Sbjct: 313 -------LETVLNTADIE-------IR-----PYTAGFTALVPGSPRDDPHLGVALMRPH 353
Query: 526 SRGYIQLNATDPLWGPPLIFPKFFTKKPDLDVFVAG 561
SRG I+L + DP PP I ++ + D AG
Sbjct: 354 SRGRIRLASADPA-DPPRIEHRYDSSAADRAALRAG 388
>gnl|CDD|216089 pfam00732, GMC_oxred_N, GMC oxidoreductase. This family of
proteins bind FAD as a cofactor.
Length = 218
Score = 161 bits (409), Expect = 4e-46
Identities = 73/240 (30%), Positives = 96/240 (40%), Gaps = 42/240 (17%)
Query: 189 NGR-CYWARGKVMGGSSTINYMIYARGNAEDYDEWE-AMGNEGWGYDEVLEYFKKSEDNE 246
NGR G +GG S++N+ R A DEW G EGWGYD+ L Y K E
Sbjct: 15 NGRRMILPAGSTVGGGSSVNWSACIRTPAAVLDEWASEFGLEGWGYDDYLPYMDKVE--- 71
Query: 247 DKEIYHKNPEYHGKGGYQTVEWLPYADKNLPVLIKAWKEKGYP----ERDLNAENQIGVM 302
G G T L+KA +E GYP R+ N + G
Sbjct: 72 ------------GPLGVTT--KGIEESPLNQALLKAAEELGYPVEAVPRNSNGCHYCGFC 117
Query: 303 HLQTTTRHGERLSTNGAFIRPIRKKRKNLTILTEAHVTRIICDKTPNKHKKLVAKSVEFF 362
L G + ST ++RP +NL ILT A +II + + V
Sbjct: 118 GLGC--PTGAKQSTARTWLRPAL--ERNLRILTGAKAEKIIIL---GRGGRAVGVEARDG 170
Query: 363 YKKKLRRARAKKEVISSAGAINSPKILMLSGIGPKDHLTSLNIKTLVDLKVGHNLQDHLT 422
R A KEV+ +AGA+N+P +L+ SG+G H VG NLQ H
Sbjct: 171 GGGIKRLITAAKEVVVAAGALNTPPLLLRSGLGKNPH------------PVGKNLQLHPV 218
>gnl|CDD|215420 PLN02785, PLN02785, Protein HOTHEAD.
Length = 587
Score = 62.9 bits (153), Expect = 2e-10
Identities = 33/98 (33%), Positives = 49/98 (50%), Gaps = 11/98 (11%)
Query: 329 KNLTILTEAHVTRIICDKTPNKHKKLVAKSVEF------FYKKKLRRARAKKEVISSAGA 382
L +L A V +I+ D + K+ A V F ++ L + E+I SAGA
Sbjct: 233 NKLRVLLHATVQKIVFDTS---GKRPRATGVIFKDENGNQHQAFLSNNK-GSEIILSAGA 288
Query: 383 INSPKILMLSGIGPKDHLTSLNIKTLVDLK-VGHNLQD 419
I SP++L+LSGIGPK L I ++ + VG + D
Sbjct: 289 IGSPQMLLLSGIGPKKELKKHKIPVVLHNEHVGKGMAD 326
Score = 49.4 bits (118), Expect = 4e-06
Identities = 35/104 (33%), Positives = 50/104 (48%), Gaps = 11/104 (10%)
Query: 115 DMTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIEEPFFADVPGLAPLISRSNIDWN 174
D +D+I++G G+AGC LA LS+ + VLLLE G PF G A + N
Sbjct: 53 DSAYDYIVVGGGTAGCPLAATLSQ--NFSVLLLERG-GVPF-----GNANVSFLENFHIG 104
Query: 175 YMTMPEPHACKA--RPNGRCYWARGKVMGGSSTINYMIYARGNA 216
A +A +G AR +V+GG + IN Y+R +
Sbjct: 105 LADTSPTSASQAFISTDG-VINARARVLGGGTCINAGFYSRAST 147
>gnl|CDD|235774 PRK06292, PRK06292, dihydrolipoamide dehydrogenase; Validated.
Length = 460
Score = 42.1 bits (100), Expect = 6e-04
Identities = 17/35 (48%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
Query: 116 MTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAG 150
+D I+IGAG AG V A R +++ K KV L+E G
Sbjct: 2 EKYDVIVIGAGPAGYVAARRAAKLGK-KVALIEKG 35
>gnl|CDD|224169 COG1249, Lpd, Pyruvate/2-oxoglutarate dehydrogenase complex,
dihydrolipoamide dehydrogenase (E3) component, and
related enzymes [Energy production and conversion].
Length = 454
Score = 41.4 bits (98), Expect = 0.001
Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Query: 115 DMTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAG 150
+D ++IGAG AG V A R +++ KV L+E G
Sbjct: 2 MKEYDVVVIGAGPAGYVAAIRAAQLGL-KVALVEKG 36
>gnl|CDD|235787 PRK06370, PRK06370, mercuric reductase; Validated.
Length = 463
Score = 40.6 bits (96), Expect = 0.002
Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Query: 118 FDFIIIGAGSAGCVLANRLSEIKKWKVLLLE 148
+D I+IGAG AG LA R + + KV L+E
Sbjct: 6 YDAIVIGAGQAGPPLAARAAGL-GMKVALIE 35
>gnl|CDD|223717 COG0644, FixC, Dehydrogenases (flavoproteins) [Energy production
and conversion].
Length = 396
Score = 40.1 bits (94), Expect = 0.002
Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Query: 115 DMTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAG 150
M +D +I+GAG AG A RL++ VL+LE G
Sbjct: 1 MMEYDVVIVGAGPAGSSAARRLAK-AGLDVLVLEKG 35
>gnl|CDD|218493 pfam05199, GMC_oxred_C, GMC oxidoreductase. This domain found
associated with pfam00732.
Length = 139
Score = 38.5 bits (90), Expect = 0.002
Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Query: 524 PKSRGYIQLNATDPLWGPPLIFPKFFTKKPDLDVFVAG 561
P+SRG + L+++DP G P+I P + + DL A
Sbjct: 1 PRSRGRVTLSSSDP-LGLPVIDPNYLSDPADLAALRAA 37
>gnl|CDD|223737 COG0665, DadA, Glycine/D-amino acid oxidases (deaminating) [Amino
acid transport and metabolism].
Length = 387
Score = 39.9 bits (93), Expect = 0.003
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 115 DMTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAG 150
M D +IIG G G A L+E + V +LEAG
Sbjct: 2 SMKMDVVIIGGGIVGLSAAYYLAE-RGADVTVLEAG 36
>gnl|CDD|218770 pfam05834, Lycopene_cycl, Lycopene cyclase protein. This family
consists of lycopene beta and epsilon cyclase proteins.
Carotenoids with cyclic end groups are essential
components of the photosynthetic membranes in all
plants, algae, and cyanobacteria. These lipid-soluble
compounds protect against photo-oxidation, harvest light
for photosynthesis, and dissipate excess light energy
absorbed by the antenna pigments. The cyclisation of
lycopene (psi, psi-carotene) is a key branch point in
the pathway of carotenoid biosynthesis. Two types of
cyclic end groups are found in higher plant carotenoids:
the beta and epsilon rings. Carotenoids with two beta
rings are ubiquitous, and those with one beta and one
epsilon ring are common; however, carotenoids with two
epsilon rings are rare.
Length = 374
Score = 40.0 bits (94), Expect = 0.003
Identities = 23/58 (39%), Positives = 33/58 (56%), Gaps = 10/58 (17%)
Query: 119 DFIIIGAGSAGCVLANRLSEIKK-WKVLLLEAGIEEPF---------FADVPGLAPLI 166
D +I+GAG AG +LA RL + + +VLL++AG PF F D+ LAP +
Sbjct: 1 DLVIVGAGLAGLLLALRLRQARPGLRVLLIDAGPGPPFPNNHTWSDEFEDLGPLAPCV 58
>gnl|CDD|223652 COG0579, COG0579, Predicted dehydrogenase [General function
prediction only].
Length = 429
Score = 39.9 bits (94), Expect = 0.003
Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 116 MTFDFIIIGAGSAGCVLANRLSEIKK-WKVLLLE 148
M +D +IIG G G A LSE + V LLE
Sbjct: 2 MDYDVVIIGGGIMGAATAYELSEYEPDLSVALLE 35
>gnl|CDD|205628 pfam13450, NAD_binding_8, NAD(P)-binding Rossmann-like domain.
Length = 66
Score = 35.1 bits (82), Expect = 0.005
Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Query: 122 IIGAGSAGCVLANRLSEIKKWKVLLLEAG 150
I+GAG +G V A L++ + VL+LE
Sbjct: 1 IVGAGLSGLVAAYLLAK-RGKDVLVLEKR 28
>gnl|CDD|216400 pfam01266, DAO, FAD dependent oxidoreductase. This family includes
various FAD dependent oxidoreductases:
Glycerol-3-phosphate dehydrogenase EC:1.1.99.5,
Sarcosine oxidase beta subunit EC:1.5.3.1, D-alanine
oxidase EC:1.4.99.1, D-aspartate oxidase EC:1.4.3.1.
Length = 234
Score = 38.4 bits (90), Expect = 0.006
Identities = 12/32 (37%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 119 DFIIIGAGSAGCVLANRLSEIKKWKVLLLEAG 150
D ++IG G G A L+ + V LLE G
Sbjct: 1 DVVVIGGGIVGLSTAYELAR-RGLSVTLLERG 31
>gnl|CDD|232791 TIGR00031, UDP-GALP_mutase, UDP-galactopyranose mutase. This
enzyme is involved in the conversion of UDP-GALP into
UDP-GALF through a 2-keto intermediate. It contains FAD
as a cofactor. The gene is known as glf, ceoA, and rfbD.
It is known experimentally in E. coli, Mycobacterium
tuberculosis, and Klebsiella pneumoniae [Cell envelope,
Biosynthesis and degradation of surface polysaccharides
and lipopolysaccharides].
Length = 377
Score = 38.6 bits (90), Expect = 0.006
Identities = 17/31 (54%), Positives = 26/31 (83%), Gaps = 1/31 (3%)
Query: 118 FDFIIIGAGSAGCVLANRLSEIKKWKVLLLE 148
FD+II+GAG +G VLAN L+++ K +VL++E
Sbjct: 2 FDYIIVGAGLSGIVLANILAQLNK-RVLVVE 31
>gnl|CDD|240384 PTZ00367, PTZ00367, squalene epoxidase; Provisional.
Length = 567
Score = 38.3 bits (89), Expect = 0.009
Identities = 16/31 (51%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Query: 118 FDFIIIGAGSAGCVLANRLSEIKKWKVLLLE 148
+D II+G AG VLA LS+ + KVL+LE
Sbjct: 34 YDVIIVGGSIAGPVLAKALSKQGR-KVLMLE 63
>gnl|CDD|233671 TIGR01988, Ubi-OHases, Ubiquinone biosynthesis hydroxylase,
UbiH/UbiF/VisC/COQ6 family. This model represents a
family of FAD-dependent hydroxylases (monooxygenases)
which are all believed to act in the aerobic ubiquinone
biosynthesis pathway. A separate set of hydroxylases, as
yet undiscovered, are believed to be active under
anaerobic conditions. In E. coli three enzyme activities
have been described, UbiB (which acts first at position
6, see TIGR01982), UbiH (which acts at position 4,) and
UbiF (which acts at position 5,). UbiH and UbiF are
similar to one another and form the basis of this
subfamily. Interestingly, E. coli contains another
hydroxylase gene, called visC, that is highly similar to
UbiF, adjacent to UbiH and, when mutated, results in a
phenotype similar to that of UbiH (which has also been
named visB). Several other species appear to have three
homologs in this family, although they assort themselves
differently on phylogenetic trees (e.g. Xylella and
Mesorhizobium) making it difficult to ascribe a specific
activity to each one. Eukaryotes appear to have only a
single homolog in this subfamily (COQ6,) which
complements UbiH, but also possess a non-orthologous
gene, COQ7 which complements UbiF [Biosynthesis of
cofactors, prosthetic groups, and carriers, Menaquinone
and ubiquinone].
Length = 387
Score = 38.0 bits (89), Expect = 0.011
Identities = 13/35 (37%), Positives = 17/35 (48%)
Query: 119 DFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIEE 153
D +I+G G G LA L+ KV L+EA
Sbjct: 1 DIVIVGGGPVGLALALALARSGGLKVALIEATPLP 35
>gnl|CDD|223727 COG0654, UbiH, 2-polyprenyl-6-methoxyphenol hydroxylase and related
FAD-dependent oxidoreductases [Coenzyme metabolism /
Energy production and conversion].
Length = 387
Score = 37.8 bits (88), Expect = 0.012
Identities = 14/34 (41%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 116 MTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEA 149
D I+GAG AG LA L+ V LLE
Sbjct: 1 KMLDVAIVGAGPAGLALALALAR-AGLDVTLLER 33
>gnl|CDD|233669 TIGR01984, UbiH, 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This
model represents the FAD-dependent monoxygenase
responsible for the second hydroxylation step in the
aerobic ubiquinone bioynthetic pathway. The scope of
this model is limited to the proteobacteria. This family
is closely related to the UbiF hydroxylase which
catalyzes the final hydroxylation step. The enzyme has
also been named VisB due to a mutant VISible light
sensitive phenotype [Biosynthesis of cofactors,
prosthetic groups, and carriers, Menaquinone and
ubiquinone].
Length = 382
Score = 37.7 bits (88), Expect = 0.014
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 119 DFIIIGAGSAGCVLANRLSEIKKWKVLLLEA 149
D II+G G G LA LS + K K+ L+EA
Sbjct: 1 DVIIVGGGLVGLSLALALSRLGKIKIALIEA 31
>gnl|CDD|234978 PRK01747, mnmC, bifunctional tRNA
(mnm(5)s(2)U34)-methyltransferase/FAD-dependent
cmnm(5)s(2)U34 oxidoreductase; Reviewed.
Length = 662
Score = 37.9 bits (89), Expect = 0.016
Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 119 DFIIIGAGSAGCVLANRLSEIKKWKVLLLEA 149
D IIG G AG LA L+ + W+V L EA
Sbjct: 262 DAAIIGGGIAGAALALALAR-RGWQVTLYEA 291
>gnl|CDD|233693 TIGR02032, GG-red-SF, geranylgeranyl reductase family. This model
represents a subfamily which includes geranylgeranyl
reductases involved in chlorophyll and
bacteriochlorophyll biosynthesis as well as other
related enzymes which may also act on geranylgeranyl
groups or related substrates [Biosynthesis of cofactors,
prosthetic groups, and carriers, Chlorophyll and
bacteriochlorphyll].
Length = 295
Score = 36.9 bits (86), Expect = 0.018
Identities = 15/31 (48%), Positives = 22/31 (70%), Gaps = 1/31 (3%)
Query: 118 FDFIIIGAGSAGCVLANRLSEIKKWKVLLLE 148
+D +++GAG AG A RL++ K +VLLLE
Sbjct: 1 YDVVVVGAGPAGASAAYRLAD-KGLRVLLLE 30
>gnl|CDD|223636 COG0562, Glf, UDP-galactopyranose mutase [Cell envelope biogenesis,
outer membrane].
Length = 374
Score = 36.2 bits (84), Expect = 0.042
Identities = 13/32 (40%), Positives = 24/32 (75%), Gaps = 1/32 (3%)
Query: 118 FDFIIIGAGSAGCVLANRLSEIKKWKVLLLEA 149
FD++I+GAG +G V+A +++ K +VL++E
Sbjct: 2 FDYLIVGAGLSGAVIAEVAAQLGK-RVLIVEK 32
>gnl|CDD|224992 COG2081, COG2081, Predicted flavoproteins [General function
prediction only].
Length = 408
Score = 35.6 bits (83), Expect = 0.061
Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 116 MTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAG 150
FD IIIG G AG + A ++ + +VLL++ G
Sbjct: 2 ERFDVIIIGGGPAGLMAAISAAKAGR-RVLLIDKG 35
>gnl|CDD|235798 PRK06416, PRK06416, dihydrolipoamide dehydrogenase; Reviewed.
Length = 462
Score = 35.5 bits (83), Expect = 0.068
Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 115 DMTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAG 150
+D I+IGAG G V A R +++ KV ++E
Sbjct: 2 AFEYDVIVIGAGPGGYVAAIRAAQLGL-KVAIVEKE 36
>gnl|CDD|219686 pfam07992, Pyr_redox_2, Pyridine nucleotide-disulphide
oxidoreductase. This family includes both class I and
class II oxidoreductases and also NADH oxidases and
peroxidases. This domain is actually a small NADH
binding domain within a larger FAD binding domain.
Length = 283
Score = 35.0 bits (81), Expect = 0.089
Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 119 DFIIIGAGSAGCVLANRLSEIKKWKVLLLEA 149
D +IIG G AG A RL+ KV L+E
Sbjct: 1 DVVIIGGGPAGLAAAIRLAR-LGLKVALIER 30
>gnl|CDD|224154 COG1233, COG1233, Phytoene dehydrogenase and related proteins
[Secondary metabolites biosynthesis, transport, and
catabolism].
Length = 487
Score = 34.3 bits (79), Expect = 0.15
Identities = 14/49 (28%), Positives = 20/49 (40%), Gaps = 10/49 (20%)
Query: 116 MTFDFIIIGAGSAGCVLANRLSEIKK-WKVLLLEAGIEEPFFADVPGLA 163
+D ++IGAG G A L+ + KV +LE D G
Sbjct: 2 PMYDVVVIGAGLNGLAAAALLA--RAGLKVTVLEK-------NDRVGGR 41
>gnl|CDD|183782 PRK12834, PRK12834, putative FAD-binding dehydrogenase; Reviewed.
Length = 549
Score = 34.1 bits (79), Expect = 0.18
Identities = 16/35 (45%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Query: 114 DDMTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLE 148
M D I++GAG AG V A L++ K +VLLL+
Sbjct: 1 MAMDADVIVVGAGLAGLVAAAELADAGK-RVLLLD 34
>gnl|CDD|224550 COG1635, THI4, Ribulose 1,5-bisphosphate synthetase, converts PRPP
to RuBP, flavoprotein [Carbohydrate transport and
metabolism].
Length = 262
Score = 33.1 bits (76), Expect = 0.34
Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 110 EEQDDDMTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEA 149
E+ D + D II+GAG +G A L++ KV + E
Sbjct: 23 EDLLDYLESDVIIVGAGPSGLTAAYYLAK-AGLKVAIFER 61
>gnl|CDD|131515 TIGR02462, pyranose_ox, pyranose oxidase. Pyranose oxidase (also
called glucose 2-oxidase) converts D-glucose and
molecular oxygen to 2-dehydro-D-glucose and hydrogen
peroxide. Peroxide production is believed to be
important to the wood rot fungi in which this enzyme is
found for lignin degradation.
Length = 544
Score = 33.3 bits (76), Expect = 0.42
Identities = 41/188 (21%), Positives = 67/188 (35%), Gaps = 45/188 (23%)
Query: 215 NAEDYDEWEAMGNEGWGYDEVLEYFKKSEDNEDKEIYHK------NPEYHGKGGYQTVEW 268
AED EW+ + Y + S D D+ I H EY G+ +Q
Sbjct: 143 AAEDDAEWDRL------YTKAESLIGTSTDQFDESIRHNLVLRKLQDEYKGQRDFQP--- 193
Query: 269 LPYADKNLPVLIKAWKEKGYPERDLNAENQIGVMHLQTTTRHGERLSTNGAFIRPIRKKR 328
LP+ + Y E +A+ V LQ
Sbjct: 194 -------LPLACHRRTDPTYVEWH-SADT---VFDLQPNDD----------------APS 226
Query: 329 KNLTILTEAHVTRIICDKTPNKHKKLVAKSVEFFYKKKLRRARAKKEVISSAGAINSPKI 388
+ T+LT TR++ ++T ++ A V +A V++ GA+++P+I
Sbjct: 227 ERFTLLTNHRCTRLVRNET--NESEIEAALVRDLLSGDRFEIKADVYVLA-CGAVHNPQI 283
Query: 389 LMLSGIGP 396
L+ SG G
Sbjct: 284 LVNSGFGQ 291
>gnl|CDD|235701 PRK06116, PRK06116, glutathione reductase; Validated.
Length = 450
Score = 33.2 bits (77), Expect = 0.42
Identities = 17/36 (47%), Positives = 21/36 (58%), Gaps = 3/36 (8%)
Query: 116 MTFDF--IIIGAGSAGCVLANRLSEIKKWKVLLLEA 149
MT D+ I+IG GS G ANR + KV L+EA
Sbjct: 1 MTKDYDLIVIGGGSGGIASANRAAMYGA-KVALIEA 35
>gnl|CDD|235241 PRK04176, PRK04176, ribulose-1,5-biphosphate synthetase;
Provisional.
Length = 257
Score = 32.5 bits (75), Expect = 0.44
Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 110 EEQDDDMTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLE 148
E+ D + D I+GAG +G A L++ KV + E
Sbjct: 18 EKLLDYLEVDVAIVGAGPSGLTAAYYLAK-AGLKVAVFE 55
>gnl|CDD|183139 PRK11445, PRK11445, putative oxidoreductase; Provisional.
Length = 351
Score = 32.3 bits (74), Expect = 0.57
Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Query: 118 FDFIIIGAGSAGCVLANRLSEIKKWKVLLLE 148
+D IIG G AG LA L+ K KV+ ++
Sbjct: 2 YDVAIIGLGPAGSALARLLA--GKMKVIAID 30
>gnl|CDD|130850 TIGR01790, carotene-cycl, lycopene cyclase family protein. This
family includes lycopene beta and epsilion cyclases
(which form beta and delta carotene, respectively) from
bacteria and plants as well as the plant
capsanthin/capsorubin and neoxanthin cyclases which
appear to have evolved from the plant lycopene cyclases.
The plant lycopene epsilon cyclases also transform
neurosporene to alpha zeacarotene.
Length = 388
Score = 32.4 bits (74), Expect = 0.57
Identities = 12/37 (32%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Query: 119 DFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIEEPF 155
D +IG G AG +A L+ +V L+E P
Sbjct: 1 DLAVIGGGPAGLAIALELAR-PGLRVQLIEPHPPIPG 36
>gnl|CDD|130849 TIGR01789, lycopene_cycl, lycopene cyclase. This model represents
a family of bacterial lycopene cyclases catalyzing the
transformation of lycopene to carotene. These enzymes
are found in a limited spectrum of alpha and gamma
proteobacteria as well as Flavobacterium.
Length = 370
Score = 32.5 bits (74), Expect = 0.62
Identities = 13/33 (39%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Query: 119 DFIIIGAGSAGCVLANRLSEIK-KWKVLLLEAG 150
D II+G G AG ++A RL + +++ ++EAG
Sbjct: 1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAG 33
>gnl|CDD|130444 TIGR01377, soxA_mon, sarcosine oxidase, monomeric form. Sarcosine
oxidase catalyzes the oxidative demethylation of
sarcosine to glycine. The reaction converts
tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The
enzyme is known in monomeric and heterotetrameric
(alpha,beta,gamma,delta) forms [Energy metabolism, Amino
acids and amines].
Length = 380
Score = 32.5 bits (74), Expect = 0.66
Identities = 16/31 (51%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Query: 118 FDFIIIGAGSAGCVLANRLSEIKKWKVLLLE 148
FD I++GAG GC A L++ K K LLLE
Sbjct: 1 FDVIVVGAGIMGCFAAYHLAKHGK-KTLLLE 30
>gnl|CDD|223523 COG0446, HcaD, Uncharacterized NAD(FAD)-dependent dehydrogenases
[General function prediction only].
Length = 415
Score = 32.2 bits (73), Expect = 0.66
Identities = 10/69 (14%), Positives = 23/69 (33%), Gaps = 3/69 (4%)
Query: 120 FIIIGAGSAGCVLANRL-SEIKKWKVLLLEAGIEEPFFADVPGLAPLISRSNIDWNYMTM 178
+I+G G+AG A L + ++ L+ + ++ L+ + +
Sbjct: 1 IVIVGGGAAGLSAATTLRRLLLAAEITLIGREPKYSYYR--CPLSLYVGGGIASLEDLRY 58
Query: 179 PEPHACKAR 187
P
Sbjct: 59 PPRFNRATG 67
>gnl|CDD|235412 PRK05329, PRK05329, anaerobic glycerol-3-phosphate dehydrogenase
subunit B; Validated.
Length = 422
Score = 32.1 bits (74), Expect = 0.75
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 116 MTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAG 150
M FD ++IG G AG A +E K +V L+ G
Sbjct: 1 MKFDVLVIGGGLAGLTAALAAAEAGK-RVALVAKG 34
>gnl|CDD|223651 COG0578, GlpA, Glycerol-3-phosphate dehydrogenase [Energy
production and conversion].
Length = 532
Score = 32.2 bits (74), Expect = 0.76
Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 115 DMTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAG 150
FD I+IG G G +A + + KV L+E G
Sbjct: 10 MEEFDVIVIGGGITGAGIARDAAG-RGLKVALVEKG 44
>gnl|CDD|185420 PTZ00058, PTZ00058, glutathione reductase; Provisional.
Length = 561
Score = 32.3 bits (73), Expect = 0.79
Identities = 19/65 (29%), Positives = 24/65 (36%), Gaps = 15/65 (23%)
Query: 84 YDNTGHKKRPEQSNEGYDKDHKNNNREEQDDDMTFDFIIIGAGSAGCVLANRLSEIKKWK 143
Y N P + K M +D I+IG GS G A R + K K
Sbjct: 29 YHNLEASSAPT-----HLKKKP---------RMVYDLIVIGGGSGGMAAARRAAR-NKAK 73
Query: 144 VLLLE 148
V L+E
Sbjct: 74 VALVE 78
>gnl|CDD|145231 pfam01946, Thi4, Thi4 family. This family includes a putative
thiamine biosynthetic enzyme.
Length = 229
Score = 31.3 bits (71), Expect = 0.95
Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Query: 110 EEQDDDMTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEA 149
E+ D D +I+GAG +G A L++ K KV ++E
Sbjct: 10 EDLLDYAESDVVIVGAGPSGLTAAYYLAK-KGLKVAIIER 48
>gnl|CDD|233368 TIGR01350, lipoamide_DH, dihydrolipoamide dehydrogenase. This
model describes dihydrolipoamide dehydrogenase, a
flavoprotein that acts in a number of ways. It is the E3
component of dehydrogenase complexes for pyruvate,
2-oxoglutarate, 2-oxoisovalerate, and acetoin. It can
also serve as the L protein of the glycine cleavage
system. This family includes a few members known to have
distinct functions (ferric leghemoglobin reductase and
NADH:ferredoxin oxidoreductase) but that may be
predicted by homology to act as dihydrolipoamide
dehydrogenase as well. The motif GGXCXXXGCXP near the
N-terminus contains a redox-active disulfide.
Length = 460
Score = 31.8 bits (73), Expect = 0.99
Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 117 TFDFIIIGAGSAGCVLANRLSEIKKWKVLLLE 148
+D I+IG G G V A R +++ KV L+E
Sbjct: 1 AYDVIVIGGGPGGYVAAIRAAQLGL-KVALVE 31
>gnl|CDD|237225 PRK12843, PRK12843, putative FAD-binding dehydrogenase; Reviewed.
Length = 578
Score = 32.0 bits (73), Expect = 1.0
Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 107 NNREEQDDDMTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEA 149
+ + D FD I+IGAG+AG + A + I KVLL+E
Sbjct: 6 SELSPERWDAEFDVIVIGAGAAG-MSAALFAAIAGLKVLLVER 47
>gnl|CDD|224152 COG1231, COG1231, Monoamine oxidase [Amino acid transport and
metabolism].
Length = 450
Score = 31.6 bits (72), Expect = 1.1
Identities = 16/33 (48%), Positives = 21/33 (63%), Gaps = 5/33 (15%)
Query: 119 DFIIIGAGSAGCVLANRLSEIKK--WKVLLLEA 149
D II+GAG AG A E+KK ++V +LEA
Sbjct: 9 DVIIVGAGLAGLSAA---YELKKAGYQVQILEA 38
>gnl|CDD|232908 TIGR00292, TIGR00292, thiazole biosynthesis enzyme. This enzyme is
involved in the biosynthesis of the thiamine precursor
thiazole, and is repressed by thiamine. This family
includes c-thi1, a Citrus gene induced during natural
and ethylene induced fruit maturation and is highly
homologous to plant and yeast thi genes involved in
thiamine biosynthesis [Biosynthesis of cofactors,
prosthetic groups, and carriers, Thiamine].
Length = 254
Score = 31.0 bits (70), Expect = 1.3
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 110 EEQDDDMTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLE 148
E+ D D II+GAG +G A L++ KV +LE
Sbjct: 14 EDLLDYAESDVIIVGAGPSGLTAAYYLAK-NGLKVCVLE 51
>gnl|CDD|235879 PRK06854, PRK06854, adenylylsulfate reductase subunit alpha;
Validated.
Length = 608
Score = 31.4 bits (72), Expect = 1.3
Identities = 18/42 (42%), Positives = 24/42 (57%), Gaps = 8/42 (19%)
Query: 116 MTFDFIIIGAGSAGCVLANRLSEIKKW----KVLLLE-AGIE 152
+ D +IIG G AGC A E K+W KVL++E A I+
Sbjct: 10 VDTDILIIGGGMAGCGAA---FEAKEWAPDLKVLIVEKANIK 48
>gnl|CDD|235584 PRK05732, PRK05732, 2-octaprenyl-6-methoxyphenyl hydroxylase;
Validated.
Length = 395
Score = 31.4 bits (72), Expect = 1.4
Identities = 16/35 (45%), Positives = 19/35 (54%), Gaps = 4/35 (11%)
Query: 118 FDFIIIGAGSAGCVLA---NRLSEIKKWKVLLLEA 149
D II+G G AG LA +RLS V L+EA
Sbjct: 4 MDVIIVGGGMAGATLALALSRLSH-GGLPVALIEA 37
>gnl|CDD|236374 PRK09077, PRK09077, L-aspartate oxidase; Provisional.
Length = 536
Score = 31.0 bits (71), Expect = 1.6
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Query: 111 EQDDDMTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAG 150
+ D +IIG+G+AG LA RL+E +V +L G
Sbjct: 2 NTSPEHQCDVLIIGSGAAGLSLALRLAE--HRRVAVLSKG 39
>gnl|CDD|214474 smart00022, PLAc, Cytoplasmic phospholipase A2, catalytic subunit.
Cytosolic phospholipases A2 hydrolyse arachidonyl
phospholipids. Family includes phospholipases B
isoforms.
Length = 549
Score = 31.2 bits (71), Expect = 1.8
Identities = 16/89 (17%), Positives = 31/89 (34%), Gaps = 25/89 (28%)
Query: 197 GKVMGGSSTI--NYMIYARGNAEDYDEWEAMGNEGWGYDEVLEYFKK-SEDNEDKEIYHK 253
G +MG SS++ +++ + E + K S D++D IY
Sbjct: 296 GFIMGTSSSLFNRFLLVLSN---------STMEESLIKIIIKHILKDLSSDSDDIAIYPP 346
Query: 254 NPEYHGKGGYQTVEWL------PYADKNL 276
NP ++ ++ D +L
Sbjct: 347 NP-------FKDDAYVQRMLTNSLGDSDL 368
>gnl|CDD|226103 COG3573, COG3573, Predicted oxidoreductase [General function
prediction only].
Length = 552
Score = 30.9 bits (70), Expect = 2.2
Identities = 16/35 (45%), Positives = 24/35 (68%), Gaps = 1/35 (2%)
Query: 114 DDMTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLE 148
D +T D I++GAG AG V A L++ K +VL+L+
Sbjct: 2 DGLTADVIVVGAGLAGLVAAAELADAGK-RVLILD 35
>gnl|CDD|217590 pfam03486, HI0933_like, HI0933-like protein.
Length = 405
Score = 30.6 bits (70), Expect = 2.3
Identities = 12/33 (36%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Query: 118 FDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAG 150
+D I+IG G+AG + A ++ + +VLL++ G
Sbjct: 1 YDVIVIGGGAAGLMAAISAAKRGR-RVLLIDKG 32
>gnl|CDD|181142 PRK07846, PRK07846, mycothione reductase; Reviewed.
Length = 451
Score = 30.3 bits (69), Expect = 2.8
Identities = 11/34 (32%), Positives = 19/34 (55%), Gaps = 3/34 (8%)
Query: 117 TFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAG 150
+D IIIG GS +L R ++ ++ ++E G
Sbjct: 1 HYDLIIIGTGSGNSILDERFAD---KRIAIVEKG 31
>gnl|CDD|215362 PLN02676, PLN02676, polyamine oxidase.
Length = 487
Score = 30.5 bits (69), Expect = 3.0
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 117 TFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEA 149
+ II+GAG +G A LSE +L+LEA
Sbjct: 26 SPSVIIVGAGMSGISAAKTLSEAGIEDILILEA 58
>gnl|CDD|235727 PRK06183, mhpA, 3-(3-hydroxyphenyl)propionate hydroxylase;
Validated.
Length = 500
Score = 30.3 bits (69), Expect = 3.0
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Query: 111 EQDDDMTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLE 148
+ D D +I+GAG G LAN L +VL+LE
Sbjct: 4 QHPDAHDTDVVIVGAGPVGLTLANLLG-QYGVRVLVLE 40
>gnl|CDD|178566 PLN02985, PLN02985, squalene monooxygenase.
Length = 514
Score = 30.3 bits (68), Expect = 3.1
Identities = 18/45 (40%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Query: 110 EEQDDDMTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIEEP 154
EE+ D T D II+GAG G LA L++ + +V ++E + EP
Sbjct: 37 EERKDGAT-DVIIVGAGVGGSALAYALAKDGR-RVHVIERDLREP 79
>gnl|CDD|236385 PRK09126, PRK09126, hypothetical protein; Provisional.
Length = 392
Score = 30.3 bits (69), Expect = 3.1
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 5/46 (10%)
Query: 115 DMTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLE----AGIEEPFF 156
M D +++GAG AG A L+ KV L+E A + +P F
Sbjct: 1 MMHSDIVVVGAGPAGLSFARSLAG-SGLKVTLIERQPLAALADPAF 45
>gnl|CDD|130488 TIGR01421, gluta_reduc_1, glutathione-disulfide reductase,
animal/bacterial. The tripeptide glutathione is an
important reductant, e.g., for maintaining the cellular
thiol/disulfide status and for protecting against
reactive oxygen species such as hydrogen peroxide.
Glutathione-disulfide reductase regenerates reduced
glutathione from oxidized glutathione (glutathione
disulfide) + NADPH. This model represents one of two
closely related subfamilies of glutathione-disulfide
reductase. Both are closely related to trypanothione
reductase, and separate models are built so each of the
three can describe proteins with conserved function.
This model describes glutathione-disulfide reductases of
animals, yeast, and a number of animal-resident bacteria
[Energy metabolism, Electron transport].
Length = 450
Score = 30.2 bits (68), Expect = 3.3
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Query: 117 TFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEA 149
+D+++IG GS G A R +E K LL+EA
Sbjct: 2 HYDYLVIGGGSGGIASARRAAEHGA-KALLVEA 33
>gnl|CDD|223981 COG1053, SdhA, Succinate dehydrogenase/fumarate reductase,
flavoprotein subunit [Energy production and conversion].
Length = 562
Score = 30.0 bits (68), Expect = 3.8
Identities = 13/34 (38%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 115 DMTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLE 148
FD ++IG G AG A +E KV LL
Sbjct: 4 IHEFDVVVIGGGGAGLRAAIEAAE-AGLKVALLS 36
>gnl|CDD|216176 pfam00890, FAD_binding_2, FAD binding domain. This family includes
members that bind FAD. This family includes the
flavoprotein subunits from succinate and fumarate
dehydrogenase, aspartate oxidase and the alpha subunit
of adenylylsulphate reductase.
Length = 401
Score = 30.0 bits (68), Expect = 3.8
Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Query: 119 DFIIIGAGSAGCVLANRLSEIKKWKVLLLEAG 150
D ++IG+G AG A +E KV ++E G
Sbjct: 1 DVVVIGSGLAGLAAALEAAEAGL-KVAVVEKG 31
>gnl|CDD|224983 COG2072, TrkA, Predicted flavoprotein involved in K+ transport
[Inorganic ion transport and metabolism].
Length = 443
Score = 29.7 bits (67), Expect = 4.0
Identities = 10/39 (25%), Positives = 14/39 (35%)
Query: 111 EQDDDMTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEA 149
D IIGAG +G A L + ++ E
Sbjct: 2 TVGVATHTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEK 40
>gnl|CDD|180907 PRK07251, PRK07251, pyridine nucleotide-disulfide oxidoreductase;
Provisional.
Length = 438
Score = 29.7 bits (67), Expect = 4.2
Identities = 16/32 (50%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Query: 117 TFDFIIIGAGSAGCVLANRLSEIKKWKVLLLE 148
T+D I+IG G AG LA +L+ K KV L+E
Sbjct: 3 TYDLIVIGFGKAGKTLAAKLASAGK-KVALVE 33
>gnl|CDD|237339 PRK13299, PRK13299, tRNA CCA-pyrophosphorylase; Provisional.
Length = 394
Score = 29.8 bits (68), Expect = 4.2
Identities = 18/83 (21%), Positives = 31/83 (37%), Gaps = 7/83 (8%)
Query: 346 KTPNKHKKLVAKSVEFFYKKKLRRA------RAKKEVISSAGAINSPKILMLSGIGPKDH 399
K NK K V K + + + R + KE+ A + + L + ++
Sbjct: 273 KLSNKFIKDVVKLLALYALRSERSWEKLDLYQYGKEIALLAEDLRQAQGLSVDEEAIQEL 332
Query: 400 LTSLNIKTLVDLKV-GHNLQDHL 421
+L I +L V G +L H
Sbjct: 333 YQALPIHDKKELAVNGGDLLKHF 355
>gnl|CDD|235362 PRK05192, PRK05192, tRNA uridine 5-carboxymethylaminomethyl
modification enzyme GidA; Validated.
Length = 618
Score = 30.0 bits (69), Expect = 4.3
Identities = 7/16 (43%), Positives = 10/16 (62%)
Query: 115 DMTFDFIIIGAGSAGC 130
+D I++G G AGC
Sbjct: 2 PEEYDVIVVGGGHAGC 17
>gnl|CDD|178082 PLN02463, PLN02463, lycopene beta cyclase.
Length = 447
Score = 29.7 bits (67), Expect = 5.3
Identities = 8/21 (38%), Positives = 14/21 (66%)
Query: 118 FDFIIIGAGSAGCVLANRLSE 138
D +++G G AG +A ++SE
Sbjct: 29 VDLVVVGGGPAGLAVAQQVSE 49
>gnl|CDD|233672 TIGR01989, COQ6, ubiquinone biosynthesis monooxygenase COQ6. This
model represents the monooxygenase responsible for the
4-hydroxylateion of the phenol ring in the aerobic
biosynthesis of ubiquinone.
Length = 437
Score = 29.3 bits (66), Expect = 5.9
Identities = 23/78 (29%), Positives = 27/78 (34%), Gaps = 24/78 (30%)
Query: 118 FDFIIIGAGSAGCVLANRLS---EIKKWKVLLLEAGIEEPFFADVPGLAPLISRSNIDWN 174
FD +I+G G G LA L K KVLLL+A D P L N
Sbjct: 1 FDVVIVGGGPVGLALAAALGNNPLTKDLKVLLLDAV-------DNPKLK--------SRN 45
Query: 175 YMTMPEPHACKARPNGRC 192
Y P + R
Sbjct: 46 YEKPDGP------YSNRV 57
>gnl|CDD|223108 COG0029, NadB, Aspartate oxidase [Coenzyme metabolism].
Length = 518
Score = 29.5 bits (67), Expect = 5.9
Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 7/37 (18%)
Query: 116 MTFDF-----IIIGAGSAGCVLANRLSEIKKWKVLLL 147
M DF +IIG+G AG A L+ ++V +L
Sbjct: 1 MNTDFEHPDVLIIGSGLAGLTAALSLAP--SFRVTVL 35
>gnl|CDD|213807 TIGR03378, glycerol3P_GlpB, glycerol-3-phosphate dehydrogenase,
anaerobic, B subunit. Members of this protein family
are the B subunit, product of the glpB gene, of a
three-subunit, membrane-anchored, FAD-dependent
anaerobic glycerol-3-phosphate dehydrogenase [Energy
metabolism, Anaerobic].
Length = 419
Score = 29.2 bits (66), Expect = 5.9
Identities = 17/33 (51%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Query: 118 FDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAG 150
FD IIIG G AG A RL+E K K ++ AG
Sbjct: 1 FDVIIIGGGLAGLSCALRLAEAGK-KCAIIAAG 32
>gnl|CDD|131777 TIGR02730, carot_isom, carotene isomerase. Members of this family,
including sll0033 (crtH) of Synechocystis sp. PCC 6803,
catalyze a cis-trans isomerization of carotenes to the
all-trans lycopene, a reaction that can also occur
non-enzymatically in light through photoisomerization
[Biosynthesis of cofactors, prosthetic groups, and
carriers, Other].
Length = 493
Score = 29.0 bits (65), Expect = 6.8
Identities = 15/31 (48%), Positives = 22/31 (70%), Gaps = 1/31 (3%)
Query: 118 FDFIIIGAGSAGCVLANRLSEIKKWKVLLLE 148
+D I+IG+G G V A +L+ +K KVL+LE
Sbjct: 1 YDAIVIGSGIGGLVTATQLA-VKGAKVLVLE 30
>gnl|CDD|224210 COG1291, MotA, Flagellar motor component [Cell motility and
secretion].
Length = 266
Score = 28.7 bits (65), Expect = 6.9
Identities = 8/28 (28%), Positives = 12/28 (42%), Gaps = 1/28 (3%)
Query: 120 FIIIGAGSAGCVLANRLSEIKK-WKVLL 146
II+G G ++ N +K K L
Sbjct: 37 LIIVGGGIGAFMVGNPGKVVKATPKALK 64
>gnl|CDD|181057 PRK07608, PRK07608, ubiquinone biosynthesis hydroxylase family
protein; Provisional.
Length = 388
Score = 29.2 bits (66), Expect = 7.3
Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 116 MTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAG 150
M FD +++G G G LA L++ +V LL
Sbjct: 4 MKFDVVVVGGGLVGASLALALAQSGL-RVALLAPR 37
>gnl|CDD|178267 PLN02661, PLN02661, Putative thiazole synthesis.
Length = 357
Score = 29.0 bits (65), Expect = 7.3
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 119 DFIIIGAGSAGCVLANRLSEIKKWKVLLLE 148
D +I+GAGSAG A LS+ KV ++E
Sbjct: 94 DVVIVGAGSAGLSCAYELSKNPNVKVAIIE 123
>gnl|CDD|215281 PLN02507, PLN02507, glutathione reductase.
Length = 499
Score = 29.0 bits (65), Expect = 7.5
Identities = 18/44 (40%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Query: 105 KNNNREEQDDDMTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLE 148
K N E FD +IGAGS G V A R S KV + E
Sbjct: 13 KVNADEANATHYDFDLFVIGAGSGG-VRAARFSANFGAKVGICE 55
>gnl|CDD|236796 PRK10922, PRK10922, 3-octaprenyl-4-hydroxybenzoate decarboxylase;
Provisional.
Length = 497
Score = 29.1 bits (65), Expect = 7.5
Identities = 21/60 (35%), Positives = 27/60 (45%), Gaps = 9/60 (15%)
Query: 163 APLISRSNIDWNYMTMPEPHACKARPNGRCYWARGKVMGGSSTINYMIYARGNAEDYDEW 222
APLI+ W PH K R N Y R +++G + I + RG A DY EW
Sbjct: 156 APLIT-----WGLTVTRGPH--KERQNLGIY--RQQLIGKNKLIMRWLSHRGGALDYQEW 206
>gnl|CDD|180854 PRK07121, PRK07121, hypothetical protein; Validated.
Length = 492
Score = 29.1 bits (66), Expect = 7.8
Identities = 14/64 (21%), Positives = 26/64 (40%), Gaps = 8/64 (12%)
Query: 320 FIRPIRK--KRKNLTILTEAHVTRIICDKTPNKHKKLVAKSVEFFYKKKLRRARAKKEVI 377
+ P+ K + I + TR+I D + + A+ + RA+K V+
Sbjct: 179 LMDPLAKRAAALGVQIRYDTRATRLIVDDD-GRVVGVEARRYG-----ETVAIRARKGVV 232
Query: 378 SSAG 381
+AG
Sbjct: 233 LAAG 236
>gnl|CDD|233412 TIGR01438, TGR, thioredoxin and glutathione reductase
selenoprotein. This homodimeric, FAD-containing member
of the pyridine nucleotide disulfide oxidoreductase
family contains a C-terminal motif Cys-SeCys-Gly, where
SeCys is selenocysteine encoded by TGA (in some sequence
reports interpreted as a stop codon). In some members of
this subfamily, Cys-SeCys-Gly is replaced by
Cys-Cys-Gly. The reach of the selenium atom at the
C-term arm of the protein is proposed to allow broad
substrate specificity.
Length = 484
Score = 29.0 bits (65), Expect = 7.9
Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Query: 118 FDFIIIGAGSAGCVLANRLSEIKKWKVLLLEA 149
+D I+IG GS G A + KV+LL+
Sbjct: 3 YDLIVIGGGSGGLAAAKEAAAYGA-KVMLLDF 33
>gnl|CDD|227806 COG5519, COG5519, Superfamily II helicase and inactivated
derivatives [DNA replication, recombination, and
repair].
Length = 562
Score = 28.9 bits (65), Expect = 8.2
Identities = 10/76 (13%), Positives = 17/76 (22%), Gaps = 16/76 (21%)
Query: 253 KNPEYHGKGGYQTVEW-------------LPYADK---NLPVLIKAWKEKGYPERDLNAE 296
Y + +E Y + + P+ A +G P D
Sbjct: 435 NEFGYSNYESEEYLEQINGFLIVFDESRLATYPNTDGQDFPIAEGAGDRRGNPLTDDKTM 494
Query: 297 NQIGVMHLQTTTRHGE 312
V H +
Sbjct: 495 KFYTVPHGFRSELAKG 510
>gnl|CDD|235765 PRK06274, PRK06274, indolepyruvate oxidoreductase subunit B;
Reviewed.
Length = 197
Score = 28.5 bits (64), Expect = 8.4
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 116 MTFDFIIIGAGSAGCVLANRL 136
M F+ II G G G +LA+R+
Sbjct: 1 MNFNLIIAGVGGQGVLLASRI 21
>gnl|CDD|226017 COG3486, IucD, Lysine/ornithine N-monooxygenase [Secondary
metabolites biosynthesis, transport, and catabolism].
Length = 436
Score = 28.8 bits (65), Expect = 8.5
Identities = 19/54 (35%), Positives = 24/54 (44%), Gaps = 5/54 (9%)
Query: 118 FDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIEEPFFADVPGLAPLISRSNI 171
D I IG G LA L E K L LE +P F+ PG+ L+ S +
Sbjct: 6 LDLIGIGIGPFNLSLAALLEEHSGLKSLFLE---RKPDFSWHPGM--LLEGSTL 54
>gnl|CDD|215308 PLN02568, PLN02568, polyamine oxidase.
Length = 539
Score = 28.6 bits (64), Expect = 9.9
Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 4/34 (11%)
Query: 121 IIIGAGSAGCVLANRL----SEIKKWKVLLLEAG 150
+IIGAG AG AN+L + +++ ++E G
Sbjct: 9 VIIGAGMAGLTAANKLYTSSAANDMFELTVVEGG 42
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.316 0.135 0.407
Gapped
Lambda K H
0.267 0.0672 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 29,006,802
Number of extensions: 2817578
Number of successful extensions: 2605
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2569
Number of HSP's successfully gapped: 98
Length of query: 567
Length of database: 10,937,602
Length adjustment: 102
Effective length of query: 465
Effective length of database: 6,413,494
Effective search space: 2982274710
Effective search space used: 2982274710
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 62 (27.8 bits)