RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy1042
(567 letters)
>3fim_B ARYL-alcohol oxidase; AAO, lignin degradation, oxidoreductase,
flavoprotein; HET: FAD; 2.55A {Pleurotus eryngii}
Length = 566
Score = 504 bits (1299), Expect = e-174
Identities = 127/472 (26%), Positives = 219/472 (46%), Gaps = 45/472 (9%)
Query: 117 TFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGI--EEPFFADVP-GLAPLISRSNIDW 173
FD++++GAG+AG V+A RL+E VL+LEAG+ E A+ P L+ S DW
Sbjct: 2 DFDYVVVGAGNAGNVVAARLTEDPDVSVLVLEAGVSDENVLGAEAPLLAPGLVPNSIFDW 61
Query: 174 NYMTMPEPHACKARPNGR-CYWARGKVMGGSSTINYMIYARGNAEDYDEWEAM-GNEGWG 231
NY T + NGR + RG+++GGSS+++YM+ RG+ ED+D + A+ G+EGW
Sbjct: 62 NYTTTAQAGY-----NGRSIAYPRGRMLGGSSSVHYMVMMRGSTEDFDRYAAVTGDEGWN 116
Query: 232 YDEVLEYFKKSEDNEDKEIYH-----KNPEYHGKGGYQTVEWLPYADKNLPVLIKAWKEK 286
+D + ++ +K+E H P HG G ++ + ++ +E+
Sbjct: 117 WDNIQQFVRKNEMVVPPADNHNTSGEFIPAVHGTNGSVSISLPGFPTPLDDRVLATTQEQ 176
Query: 287 G--YPE-RDLNAENQIGVMHLQTTTRHGERLSTNGAFIRPIRKKRKNLTILTEAHVTRII 343
+ D+ + +G+ + +G+R S++ A++RP + R NL++L A VT+++
Sbjct: 177 SEEFFFNPDMGTGHPLGISWSIASVGNGQRSSSSTAYLRPAQS-RPNLSVLINAQVTKLV 235
Query: 344 CDKTPNKHKKLVAKSVEFFYKKKLRRARAKKEVISSAGAINSPKILMLSGIGPKDHLTSL 403
T N AKKEV+ SAG++ +P +L LSGIG ++ L+S+
Sbjct: 236 NSGTTNGLPAFRCVEYAEQEGAPTTTVCAKKEVVLSAGSVGTPILLQLSGIGDENDLSSV 295
Query: 404 NIKTLVDLK-VGHNLQDHLTSDGIVIAF----PKT--ATDRMYKKKVSDAFEYKESRCGP 456
I T+V+ VG NL DHL + AF +T R + D ++ +R GP
Sbjct: 296 GIDTIVNNPSVGRNLSDHL---LLPAAFFVNSNQTFDNIFRDSSEFNVDLDQWTNTRTGP 352
Query: 457 LASTGPLQCGVFAKTKLADS-------LDVPDIQFHHDPMSVRDWITNPVNASSTNMSPF 509
L + + + S H + + W +
Sbjct: 353 LTA-LIANHLAWLRLPSNSSIFQTFPDPAAGPNSAHWETIFSNQWF-------HPAIPRP 404
Query: 510 AYYDGITVRPILLKPKSRGYIQLNATDPLWGPPLIFPKFFTKKPDLDVFVAG 561
++V L+ P +RG I+L ++P PLI P++ + + D+ +
Sbjct: 405 DTGSFMSVTNALISPVARGDIKLATSNPFD-KPLINPQYLSTEFDIFTMIQA 455
>3q9t_A Choline dehydrogenase and related flavoproteins;
glucose-methanol-choline oxidoreductase family, formate
OXID formyl-FAD, oxidoreductase; HET: FAY; 2.24A
{Aspergillus oryzae}
Length = 577
Score = 499 bits (1288), Expect = e-172
Identities = 137/484 (28%), Positives = 198/484 (40%), Gaps = 59/484 (12%)
Query: 114 DDMTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIEEP---FFADVPGLAPLISRSN 170
D FDF+I+G G+AG +A RL+E VL++EAGI P P A + S
Sbjct: 3 DGSHFDFVIVGGGTAGNTVAGRLAENPNVTVLIVEAGIGNPEDIPEITTPSSAMDLRNSK 62
Query: 171 IDWNYMTMPEPHACKARPNGRCYW--ARGKVMGGSSTINYMIYARGNAEDYDEWEAMGNE 228
DW Y T R RGK +GGSS++NY + G+ +D+WE G +
Sbjct: 63 YDWAYKTTMVRRDD----YERIEKPNTRGKTLGGSSSLNYFTWVPGHKATFDQWEEFGGK 118
Query: 229 GWGYDEVLEYFKKSEDNEDKE-IYHKNPEYHGKGGYQTVEWLPYADKNLPVL---IKAWK 284
W +D ++ Y +KS D +Y E G GG + D+ P KAWK
Sbjct: 119 EWTWDPLVPYLRKSATYHDDPRLYSPELEKIGGGGPIPISHAELIDEMAPFRENLTKAWK 178
Query: 285 EKGYPE-RDLNAENQIGVMHLQTTTRHGERLSTNGAFIRPIRKKRKNLTILTEAHVTRII 343
G P ++ G+ H T G+R +F ++ + N+TI+ E H R+I
Sbjct: 179 SMGQPLIENIYDGEMDGLTHCCDTIYRGQRSG---SF-LFVK-NKPNITIVPEVHSKRLI 233
Query: 344 CDKTPNKHKKLVAKSVEFFYKK-KLRRARAKKEVISSAGAINSPKILMLSGIGPKDHLTS 402
++ K V A +EVI S G +PK+LMLSGIGP L+
Sbjct: 234 INEADRT-----CKGVTVVTAAGNELNFFADREVILSQGVFETPKLLMLSGIGPTRELSR 288
Query: 403 LNIKTLVDLK-VGHNLQDHLTSDGIVIAF----PKTATDRMYK---KKVSDAFEYKESRC 454
I T+VD + VG NL DH G+ D + + K+ + Y ++R
Sbjct: 289 HGINTIVDSRHVGQNLMDHP---GVPFVLRVKDGFGMDDVLLRHGPKRDAVVSAYNKNRS 345
Query: 455 GPLASTGPLQCGVFAKTK----------------LADSLDVPDIQFHHDPMSVRDWITNP 498
GP+ S G L+ F + P Q H + V + T
Sbjct: 346 GPVGS-GLLELVGFPRIDKYLEKDAEYRKAKAANGGKDPFSPLGQPHFELDFVCMFGT-- 402
Query: 499 VNASSTNMSPFAYYDGITVRPILLKPKSR-GYIQLNATDPLWGPPLIFPKFFTKKPDLDV 557
A + D +TV L++P S G + LN+ DP P I FF D+
Sbjct: 403 --AFQWHFPTPKTGDHLTVVVDLVRPISDPGEVTLNSADPFQ-QPNINLNFFANDLDIIA 459
Query: 558 FVAG 561
G
Sbjct: 460 MREG 463
>1gpe_A Protein (glucose oxidase); oxidoreductase(flavoprotein); HET: NAG
BMA MAN FAD; 1.80A {Penicillium amagasakiense} SCOP:
c.3.1.2 d.16.1.1
Length = 587
Score = 495 bits (1277), Expect = e-171
Identities = 117/469 (24%), Positives = 182/469 (38%), Gaps = 45/469 (9%)
Query: 117 TFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAG---IEEPFFADVPGLAPLISRSNIDW 173
T+D+II G G G +A +L+E K KVL++E G + + P I + +D
Sbjct: 24 TYDYIIAGGGLTGLTVAAKLTENPKIKVLVIEKGFYESNDGAIIEDPNAYGQIFGTTVDQ 83
Query: 174 NYMTMPEPHACKARPNGR-CYWARGKVMGGSSTINYMIYARGNAEDYDEWEAM-GNEGWG 231
NY+T P N R GK +GGS+ IN + R + D WE + G EGW
Sbjct: 84 NYLT--VPLI-----NNRTNNIKAGKGLGGSTLINGDSWTRPDKVQIDSWEKVFGMEGWN 136
Query: 232 YDEVLEYFKKSEDNE------DKEIYHKNPEYHGKGGYQTVEWLPYADKNLPVL---IKA 282
+D + EY KK+E + N HG G P++ +
Sbjct: 137 WDNMFEYMKKAEAARTPTAAQLAAGHSFNATCHGTNGTVQSGARDNGQPWSPIMKALMNT 196
Query: 283 WKEKGYPE-RDLNAENQIGVMHLQ-TTTRHGERLSTNGAFIRPIRKKRKNLTILTEAHVT 340
G P +D + GV + + R+ A++ P + R NL ILT V
Sbjct: 197 VSALGVPVQQDFLCGHPRGVSMIMNNLDENQVRVDAARAWLLPNYQ-RSNLEILTGQMVG 255
Query: 341 RIICDKTPNKHKKLVAKSVEFFYKKKLRR-ARAKKEVISSAGAINSPKILMLSGIGPKDH 399
+++ +T + + A V F K + AK EV+ +AG+ SP IL SGIG K
Sbjct: 256 KVLFKQTASGPQ---AVGVNFGTNKAVNFDVFAKHEVLLAAGSAISPLILEYSGIGLKSV 312
Query: 400 LTSLNIKTLVDLKVGHNLQDHLTSDGIVIAF----PKTATDRM--YKKKVSDAFEYKESR 453
L N+ L+DL VG N+QD T ++ + + +Y
Sbjct: 313 LDQANVTQLLDLPVGINMQDQTT---TTVSSRASSAGAGQGQAVFFANFTETFGDYAPQA 369
Query: 454 CGPLASTGPLQCGVFAKTKLA-DSLDVPDIQFHHDPMSVRDWITNPVNASSTNMSPFAYY 512
L +T Q + ++ +Q+ + + D +
Sbjct: 370 RDLL-NTKLDQWAEETVARGGFHNVTALKVQYENYRNWLLD------EDVAFAELFMDTE 422
Query: 513 DGITVRPILLKPKSRGYIQLNATDPLWGPPLIFPKFFTKKPDLDVFVAG 561
I L P +RG + + ++DP PKFF + DL A
Sbjct: 423 GKINFDLWDLIPFTRGSVHILSSDPYLWQFANDPKFFLNEFDLLGQAAA 471
>3qvp_A Glucose oxidase; oxidoreductase; HET: NAG BMA MAN FAD; 1.20A
{Aspergillus niger} PDB: 1gal_A* 1cf3_A* 3qvr_A*
Length = 583
Score = 486 bits (1253), Expect = e-167
Identities = 116/472 (24%), Positives = 173/472 (36%), Gaps = 50/472 (10%)
Query: 117 TFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIEEP---FFADVPGLAPLISRSNIDW 173
T D+II G G G A RL+E VL++E+G E + I S++D
Sbjct: 19 TVDYIIAGGGLTGLTTAARLTENPNISVLVIESGSYESDRGPIIEDLNAYGDIFGSSVDH 78
Query: 174 NYMTMPEPHACKARPNGR-CYWARGKVMGGSSTINYMIYARGNAEDYDEWEAM-GNEGWG 231
Y T E N + G +GGS+ +N + R + D WE + GNEGW
Sbjct: 79 AYET-VELAT-----NNQTALIRSGNGLGGSTLVNGGTWTRPHKAQVDSWETVFGNEGWN 132
Query: 232 YDEVLEYFKKSEDNEDKEIYHK------NPEYHGKGGYQTVEWLPYADKNLPVL---IKA 282
+D V Y ++E N HG G D P++ + A
Sbjct: 133 WDNVAAYSLQAERARAPNAKQIAAGHYFNASCHGVNGTVHAGPRDTGDDYSPIVKALMSA 192
Query: 283 WKEKGYPE-RDLNAENQIGVMHLQ-TTTRHGERLSTNGAFIRPIRKKRKNLTILTEAHVT 340
+++G P +D + GV T R ++ P + R NL +LT +V
Sbjct: 193 VEDRGVPTKKDFGCGDPHGVSMFPNTLHEDQVRSDAAREWLLPNYQ-RPNLQVLTGQYVG 251
Query: 341 RIICDKTPNKHKKLVAKSVEFFYKK-KLRRARAKKEVISSAGAINSPKILMLSGIGPKDH 399
+++ + + A VEF K AK EV+ +AG+ SP IL SGIG K
Sbjct: 252 KVLLSQNGTTPR---AVGVEFGTHKGNTHNVYAKHEVLLAAGSAVSPTILEYSGIGMKSI 308
Query: 400 LTSLNIKTLVDLKVGHNLQDHL------TSDGIVIAFPKTATDRMYKKKVSD----AFEY 449
L L I T+VDL VG NLQD + A + + D A E
Sbjct: 309 LEPLGIDTVVDLPVGLNLQDQTTATVRSRITSAGAGQGQAAWFATFNETFGDYSEKAHEL 368
Query: 450 KESRCGPLASTGPLQCGVFAKTKLADSLDVPDIQFHHDPMSVRDWITNPVNASSTNMSPF 509
++ A + G F T L + + ++
Sbjct: 369 LNTKLEQWAEEAVARGG-FHNT--TALLIQYENYRDWIVNHNVAYSELFLDT-------- 417
Query: 510 AYYDGITVRPILLKPKSRGYIQLNATDPLWGPPLIFPKFFTKKPDLDVFVAG 561
+ L P +RGY+ + DP P++F + DL A
Sbjct: 418 --AGVASFDVWDLLPFTRGYVHILDKDPYLHHFAYDPQYFLNELDLLGQAAA 467
>3t37_A Probable dehydrogenase; BET alpha beta fold, ADP binding,
oxidoreductase; HET: FAD; 2.19A {Mesorhizobium loti}
Length = 526
Score = 452 bits (1165), Expect = e-154
Identities = 122/470 (25%), Positives = 190/470 (40%), Gaps = 72/470 (15%)
Query: 106 NNNREEQDDDMTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIEEP----FFADVP- 160
R + + D +I+G GSAG +LA RLSE +VLL+EAG P
Sbjct: 6 RMTRAKVEHAPNCDIVIVGGGSAGSLLAARLSEDPDSRVLLIEAG---EEPTDPDIWNPA 62
Query: 161 GLAPLISRSNIDWNYMTMPEPHACKARPNGRC-YWARGKVMGGSSTINYMIYARGNAEDY 219
L + DW+Y T + GR +WARG+++GGSS ++ M Y RG+ D+
Sbjct: 63 AWPALQ-GRSYDWDYRTEAQAGT-----AGRAHHWARGRLIGGSSCLHAMGYMRGHPSDF 116
Query: 220 DEW-EAMGNEGWGYDEVLEYFKKSEDNEDKEIYHKNPEYHGKGG-----YQTVEWLPYAD 273
W +A G+ WG+DE+L F+ ED+ HGKGG E P A
Sbjct: 117 QAWVDASGDRRWGWDELLPVFQAIEDHPLGG-----DGIHGKGGPLPIHLPADEVSPLAR 171
Query: 274 KNLPVLIKAWKEKGYPE-RDLNAENQIGVMHLQTTTRHGERLSTNGAFIRPIRKKRKNLT 332
I+A G P N+ IGV R G R++ A++ + RKNLT
Sbjct: 172 ----AFIEAGASLGLPRLEGHNSGEMIGVTPNSLNIRDGRRVTAADAWLTKAVRGRKNLT 227
Query: 333 ILTEAHVTRIICDKTPNKHKKLVAKSVEFFYKKKLRRARAKKEVISSAGAINSPKILMLS 392
ILT + V R+ + +S+E ++ A +++ AGA+ SP +LM S
Sbjct: 228 ILTGSRVRRLKLEGN-------QVRSLEVVGRQGSAEVFA-DQIVLCAGALESPALLMRS 279
Query: 393 GIGPKDHLTSLNIKTLVDLK-VGHNLQDHLTSDGIVIAFPKTATDRMYKKKVSDAFEYKE 451
GIGP D L + + L+D+ +G NLQDHL G Y
Sbjct: 280 GIGPHDVLDAAGVGCLIDMPDIGRNLQDHLLGAGN---------------------LYAA 318
Query: 452 SRCGPLASTGPLQCGVFAKTKLADSLDVPDIQFHHDPMSVRDWITNPVNASSTNMSPFAY 511
+ P + + + + + P+I + S +
Sbjct: 319 RKPVPPSRLQHSESMAYMRADSFTAAGQPEIVVGCGVAPIVS-------ESFPAPAAG-- 369
Query: 512 YDGITVRPILLKPKSRGYIQLNATDPLWGPPLIFPKFFTKKPDLDVFVAG 561
++ + P SRG ++++ + +I P + D + F
Sbjct: 370 -SAYSLLFGITHPTSRGSVRISGPELGD-RLIIDPAYLQTGRDRERFRRA 417
>2jbv_A Choline oxidase; alcohol oxidation, flavoenyzme oxidase, covalently
linked FAD, C4A-adduct, flavoprotein, oxidoreductase;
HET: FAO; 1.86A {Arthrobacter globiformis} PDB: 3nne_A*
3ljp_A*
Length = 546
Score = 446 bits (1150), Expect = e-152
Identities = 134/465 (28%), Positives = 205/465 (44%), Gaps = 59/465 (12%)
Query: 108 NREEQDDDMTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIEE--PFFADVPGLAPL 165
+ E D FD+I++G GSAG +A RLSE V L+EAG ++
Sbjct: 4 DNIENLSDREFDYIVVGGGSAGAAVAARLSEDPAVSVALVEAGPDDRGVPEVLQLDRWME 63
Query: 166 ISRSNIDWNYMTMPEPHACKARPNGRCYWARGKVMGGSSTINYMIYARGNAEDYDEWEA- 224
+ S DW+Y P+ + N AR KVMGG S+ N I ED DEWEA
Sbjct: 64 LLESGYDWDYPIEPQENG-----NSFMRHARAKVMGGCSSHNSCIAFWAPREDLDEWEAK 118
Query: 225 MGNEGWGYDEVLEYFKKSEDNEDKEIYHKNPEYHGKGGYQTVEWLPYADKNLPVLIKAWK 284
G GW + +K+ E NED + +HG G + +P D L+ A +
Sbjct: 119 YGATGWNAEAAWPLYKRLETNED---AGPDAPHHGDSGPVHLMNVPPKDPTGVALLDACE 175
Query: 285 EKGYPE-RDLNAENQI-GVMHLQTTTR-HGERLSTNGAFIRPIRKKRKNLTILTEAHVTR 341
+ G P + + G Q R G R S++ ++I PI + ++N T+LT +
Sbjct: 176 QAGIPRAKFNTGTTVVNGANFFQINRRADGTRSSSSVSYIHPIVE-QENFTLLTGLRARQ 234
Query: 342 IICDKTPNKHKKLVAKSVEFFYKK--KLRRARAKKEVISSAGAINSPKILMLSGIGPKDH 399
++ D V+ R A+ EV+ S GAI++PK+LMLSGIGP H
Sbjct: 235 LVFDADR------RCTGVDIVDSAFGHTHRLTARNEVVLSTGAIDTPKLLMLSGIGPAAH 288
Query: 400 LTSLNIKTLVDLK-VGHNLQDHLTSDGIVIAFPKTATDRMYKKKVSDAFEYKESRCGPLA 458
L I+ LVD VG +LQDH +G+V ++ +
Sbjct: 289 LAEHGIEVLVDSPGVGEHLQDHP--EGVVQ--------------------FEAKQPMVAE 326
Query: 459 STGPLQCGVFAKTKLADSLDVPDIQFHHDPMSVRDWITNPVNASSTNMSPFAYYDGITVR 518
ST + G+F T+ D LD PD+ H+ + ++ +G ++
Sbjct: 327 STQWWEIGIFTPTE--DGLDRPDLMMHYGSVPFDMNTLRHGYPTT--------ENGFSLT 376
Query: 519 PILLKPKSRGYIQLNATDPLWGPPLIFPKFFT--KKPDLDVFVAG 561
P + +SRG ++L + D P++ P++FT + D+ V VAG
Sbjct: 377 PNVTHARSRGTVRLRSRDFRD-KPMVDPRYFTDPEGHDMRVMVAG 420
>1ju2_A HydroxynitrIle lyase; flavin, GMC oxidoreductase, almond,
cyanogenesis; HET: NAG NDG FUC BMA MAN FAD; 1.47A
{Prunus dulcis} SCOP: c.3.1.2 d.16.1.1 PDB: 3gdp_A*
3gdn_A*
Length = 536
Score = 406 bits (1046), Expect = e-136
Identities = 100/474 (21%), Positives = 164/474 (34%), Gaps = 82/474 (17%)
Query: 95 QSNEGYDKDHKNNNREEQDDDMTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIEEP 154
S+ + + + + + ++D++I+G G++GC LA LSE K+KVL+LE G
Sbjct: 4 TSDHDFSYLSFAYDATDLELEGSYDYVIVGGGTSGCPLAATLSE--KYKVLVLERGSLPT 61
Query: 155 FFADVPGLAPLISRSNIDWNYMTMPEPHACKARPNGR-CYWARGKVMGGSSTINYMIYAR 213
+ +V + + + T E + RG+V+GG+S IN +YAR
Sbjct: 62 AYPNVLTADGFVYNLQQEDDGKTPVERFV-----SEDGIDNVRGRVLGGTSIINAGVYAR 116
Query: 214 GNAEDYDEWEAMGNEGWGYDEVLEYFKKSEDNEDKEIYHKNPEYHGKGGYQTVEWLPYAD 273
N Y W D V + ++ ED Y +
Sbjct: 117 ANTSIYSAS----GVDWDMDLVNQTYEWVEDTI---------VYKPNSQ-------SWQS 156
Query: 274 KNLPVLIKAWKEKGYPE-RDLNAENQIGVMHLQTTTRHGERLSTNGAFIRPIRKKRKNLT 332
V A+ E G + +++ G +T + + NL
Sbjct: 157 ----VTKTAFLEAGVHPNHGFSLDHEEGTRITGSTFDNKGTRHAADELLNK--GNSNNLR 210
Query: 333 ILTEAHVTRIICDKTPNKHKKLVAKSVEFFYKKKLRR---ARAKKEVISSAGAINSPKIL 389
+ A V +II P A V + R+K EVI SAG I +P++L
Sbjct: 211 VGVHASVEKIIFSNAPGL----TATGVIYRDSNGTPHQAFVRSKGEVIVSAGTIGTPQLL 266
Query: 390 MLSGIGPKDHLTSLNIKTLVDLK-VGHNLQDHLTSDGIVIAFPKTATDRMYKKKVSDAFE 448
+LSG+GP+ +L+SLNI ++ VG L D+ I
Sbjct: 267 LLSGVGPESYLSSLNIPVVLSHPYVGQFLHDNP---RNFINILPPNPIEPTIVT------ 317
Query: 449 YKESRCGPLASTGPLQCGVFAKTKLADSLDVPDIQFHHDPMSVRDWITNPVNASSTNMSP 508
S QC SL F P S P
Sbjct: 318 ------VLGISNDFYQCS-------FSSLPFTTPPFGFFPSSSYP-------------LP 351
Query: 509 FAYYDGITVRPILLKPKSRGYIQLNA-TDPLWGPPLIFPKFFTKKPDLDVFVAG 561
+ + + P S G + L + ++ P + +++ DL V+G
Sbjct: 352 NSTFAHFA--SKVAGPLSYGSLTLKSSSNVRV-SPNVKFNYYSNLTDLSHCVSG 402
>1kdg_A CDH, cellobiose dehydrogenase; GMC oxidoreductase, PHBH fold,
alpha/beta structure, rossman 6-hydroxylated FAD,
oxidoreductase; HET: NAG MAN 6FA EMT; 1.50A
{Phanerochaete chrysosporium} SCOP: c.3.1.2 d.16.1.1
PDB: 1naa_A*
Length = 546
Score = 396 bits (1020), Expect = e-132
Identities = 94/480 (19%), Positives = 165/480 (34%), Gaps = 82/480 (17%)
Query: 117 TFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAG-----IEEPFFADVPGLAPLISRSNI 171
+D+II+GAG G + A+RLSE K KVLLLE G + + +++ +I
Sbjct: 7 PYDYIIVGAGPGGIIAADRLSEAGK-KVLLLERGGPSTKQTGGTYVAPWATSSGLTKFDI 65
Query: 172 ---DWNYMTMPEPHACKARPNGRC-YWARGKVMGGSSTINYMIYARGNAEDYDEWEAMGN 227
+ T P + G ++GG +++N +Y N D+ +
Sbjct: 66 PGLFESLFTDSNPFW-----WCKDITVFAGCLVGGGTSVNGALYWYPNDGDFS-----SS 115
Query: 228 EGW--GYDEVLEYFKKSEDNEDKEIYHKNPEYHGKGGYQTVEWLPYADKNLPVLIKAWKE 285
GW + Y K + ++ G + +E ++ V+ + K
Sbjct: 116 VGWPSSWTNHAPYTSKLSSRLP------STDHPSTDGQRYLE------QSFNVVSQLLKG 163
Query: 286 KGYPER---DLNAENQIGVMHLQTTTRHGERLSTNGAFIRPIRKKRKNLTILTEAHVTRI 342
+GY + D + +G+R +++ R N T T V+ +
Sbjct: 164 QGYNQATINDNPNYKDHVFGYSAFDFLNGKRAGPVATYLQTALA-RPNFTFKTNVMVSNV 222
Query: 343 ICDKTPNKHKKLVAKSVEF----FYKKKLRRARAKKEVISSAGAINSPKILMLSGIGPKD 398
+ + V+ K VI SAGA + +IL SGIGP D
Sbjct: 223 VRN---GSQ----ILGVQTNDPTLGPNGFIPVTPKGRVILSAGAFGTSRILFQSGIGPTD 275
Query: 399 HLTSLNIKTLVDLK-----------VGHNLQDHLTSDGIVIAFPKTAT-----DRMYKKK 442
+ ++ VG N QD+ + + +V P D +
Sbjct: 276 MIQTVQSNPTAAAALPPQNQWINLPVGMNAQDNPSIN-LVFTHPSIDAYENWADVWSNPR 334
Query: 443 VSDAFEYKESRCGPLASTGPLQCGVFAKTKLADSLDVPDIQFHHDPMSVRDWITNPVNAS 502
+DA +Y ++ G A + + +D Q P + + P NAS
Sbjct: 335 PADAAQYLANQSGVFAG-ASPKLNFWRAYSGSD-GFTRYAQGTVRPGAASVNSSLPYNAS 392
Query: 503 STNMSPFAYYDGITVRPIL-LKPKSRGYIQLNATDPLWGPPLIFPKFFTKKPDLDVFVAG 561
T+ L +SRG I ++A ++ P + D V +
Sbjct: 393 Q----------IFTITVYLSTGIQSRGRIGIDAALR---GTVLTPPWLVNPVDKTVLLQA 439
>1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism,
oxidoreductase, atomic RESO; HET: FAD; 0.92A
{Streptomyces SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1b4v_A*
1n1p_A* 1n4u_A* 1n4v_A* 1mxt_A* 2gew_A* 1b8s_A* 3gyi_A*
1cc2_A* 3gyj_A* 1ijh_A* 1cbo_A* 3b3r_A* 3b6d_A* 3cnj_A*
Length = 504
Score = 105 bits (263), Expect = 3e-24
Identities = 46/335 (13%), Positives = 95/335 (28%), Gaps = 44/335 (13%)
Query: 113 DDDMTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAG----IEEPFFADVPGLAPLISR 168
D+ ++IG G V A RL E + L+LE G P G+ R
Sbjct: 1 DNGGYVPAVVIGTGYGAAVSALRLGE-AGVQTLMLEMGQLWNQPGPDGNIFCGMLNPDKR 59
Query: 169 SNIDWNYMTMPEP----------------HACKARPNGRCYWARGKVMGGSSTINYMIYA 212
S+ N P + G+ +GG S +N +
Sbjct: 60 SSWFKNRTEAPLGSFLWLDVVNRNIDPYAGVLDRVNYDQMSVYVGRGVGGGSLVNGGMAV 119
Query: 213 RGNAEDYDEWEAMGNEGWGYDEVLEYFKKSED------NEDKEIYHKNPEYHGKGGYQTV 266
++E + YF ++ + K + +
Sbjct: 120 EPKRSYFEEI---LPRVDSSEMYDRYFPRANSMLRVNHIDTKWFEDTEWYKFARVSREQA 176
Query: 267 EWLPYADKNLPVLIKAWKEKGYPERDLNAENQIGVMHLQTTTRHGERLSTNGAFIRPIRK 326
+P + + ++ + + + + S + ++
Sbjct: 177 GKAGLGTVFVPNVY-DFGYMQREAAGEVPKSALATEVI--YGNNHGKQSLDKTYLAAAL- 232
Query: 327 KRKNLTILTEAHVTRIICDKTPNKHKKLVAKSVEFFYKKKLRRARAKKEVISSAGAINSP 386
+TI T V I + L + + K + + + + AG++ S
Sbjct: 233 GTGKVTIQTLHQVKTIRQT--KDGGYALTVEQKDTDGKLLATKEISCRYLFLGAGSLGST 290
Query: 387 KILMLSGIGPKDHLTSLNIKTLVDLKVGHNLQDHL 421
++L+ + L +LN +VG +
Sbjct: 291 ELLVRARD--TGTLPNLN------SEVGAGWGPNG 317
>1coy_A Cholesterol oxidase; oxidoreductase(oxygen receptor); HET: AND FAD;
1.80A {Brevibacterium sterolicum} SCOP: c.3.1.2 d.16.1.1
PDB: 3cox_A*
Length = 507
Score = 101 bits (252), Expect = 6e-23
Identities = 46/351 (13%), Positives = 104/351 (29%), Gaps = 46/351 (13%)
Query: 107 NNREEQDDDMTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIEEPFFADVP------ 160
+R D D ++IG+G G V A RL++ ++E G
Sbjct: 2 PSRTLADGD-RVPALVIGSGYGGAVAALRLTQ-AGIPTQIVEMGRSWDTPGSDGKIFCGM 59
Query: 161 -------------GLAPLISRSNIDWNYMTMPEPHACKARPNGRCYWARGKVMGGSSTIN 207
P+ + N + +G+ +GG S +N
Sbjct: 60 LNPDKRSMWLADKTDQPVSNFMGFGINKSIDRYVGVLDSERFSGIKVYQGRGVGGGSLVN 119
Query: 208 YMIYARGNAEDYDEWEAMGNEGWGYDEVLEYFKKSE------DNEDKEIYHKNPEYHGKG 261
+ ++E + +YF ++ + + +
Sbjct: 120 GGMAVTPKRNYFEEI---LPSVDSNEMYNKYFPRANTGLGVNNIDQAWFESTEWYKFART 176
Query: 262 GYQTVEWLPYADKNLPVLIKAWKEKGYPERDLNAENQIGVMHLQTTTRHGERLSTNGAFI 321
G +T + + +P + K + G + + + S + ++
Sbjct: 177 GRKTAQRSGFTTAFVPNVYDFEYMKKEAAGQVTKSGLGGEVI---YGNNAGKKSLDKTYL 233
Query: 322 RPIRKKRKNLTILTEAHVTRIICDKTPNKHKKLVAKSVEFFYKKKLRRARAKKEVISSAG 381
LTI T VT++ + + ++ + V +AG
Sbjct: 234 AQAA-ATGKLTITTLHRVTKVAPA--TGSGYSVTMEQIDEQGNVVATKVVTADRVFFAAG 290
Query: 382 AINSPKILMLSGIGPKDHLTSLNIKTLVDLKVGHNLQDHLTSDGIVIAFPK 432
++ + K+L+ + HL +L+ +VG ++ + +V
Sbjct: 291 SVGTSKLLVSMKA--QGHLPNLS------SQVGEGWGNN--GNIMVGRANH 331
>3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer,
GMC oxidoredu PHBH fold, rossmann domain,
oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes
ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A*
2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A*
3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A*
3fdy_A* ...
Length = 623
Score = 100 bits (249), Expect = 2e-22
Identities = 44/370 (11%), Positives = 96/370 (25%), Gaps = 82/370 (22%)
Query: 108 NREEQDDDMTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIEEPFFADVPGLAPLIS 167
+++ D+ +D +I+G+G GC A L +KV + + G + +
Sbjct: 37 DKKVPGMDIKYDVVIVGSGPIGCTYARELVG-AGYKVAMFDIGEIDSGLKIGAHKKNTVE 95
Query: 168 RSNIDWNYMTMPEPHACKARPNGRCY---------------------------------W 194
++ + +
Sbjct: 96 YQKNIDKFVNVIQGQLMSVSVPVNTLVVDTLSPTSWQASTFFVRNGSNPEQDPLRNLSGQ 155
Query: 195 ARGKVMGGSSTINYMIYARGNAEDYDEWEAMGNEGWG---------YDEVLEYFKKSEDN 245
A +V+GG ST R D ++ + + Y + YF+ D
Sbjct: 156 AVTRVVGGMSTAWTCATPRF---DREQRPLLVKDDADADDAEWDRLYTKAESYFQTGTDQ 212
Query: 246 EDKEIYHKNPE---YHGKGGYQTVEWLPYADKNLPVLIKAWKEKGYPERDLNAENQIGVM 302
+ I H G + + +P A W
Sbjct: 213 FKESIRHNLVLNKLTEEYKGQRDFQQIPLAATRRSPTFVEW------------------- 253
Query: 303 HLQTTTRHGERLSTNGAFIRPIRKKRKNLTILTEAHVTRIICDKTPNKHKKLVAKSVEFF 362
+ + + R++ + ++ +S+
Sbjct: 254 -------SSANTVFDLQNRPNTDAPEERFNLFPAVACERVVRNALNSE-----IESLHIH 301
Query: 363 YKKKLRRARAK-KEVISSAGAINSPKILMLSGIGPKDHLTSLNIKTLVDLKVGHNLQDHL 421
R K + +AGA+++ ++L+ SG G N L+ +G + +
Sbjct: 302 DLISGDRFEIKADVYVLTAGAVHNTQLLVNSGFGQLGRPNPANPPELLPS-LGSYITEQS 360
Query: 422 TSDGIVIAFP 431
+
Sbjct: 361 LVFCQTVMST 370
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 67.8 bits (165), Expect = 7e-12
Identities = 103/589 (17%), Positives = 173/589 (29%), Gaps = 214/589 (36%)
Query: 55 SHPAGSLEV------NSYRSAEDVSHILGDTFLK----AYDNTGHKKRPEQSNE------ 98
SH GSLE S+ A L + F K + P E
Sbjct: 12 SH--GSLEHVLLVPTASFFIASQ----LQEQFNKILPEPTEGFAADDEPTTPAELVGKFL 65
Query: 99 GYDKDHKNNNREEQDDDMTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIEEPFFA- 157
GY ++ Q D VL + L E E +
Sbjct: 66 GYVSSLVEPSKVGQFDQ---------------VL----------NLCLTE--FENCYLEG 98
Query: 158 -DVPGLA---------PLISRSNIDWNYMTMPEPHACKA--RPNGRCYWAR--GKVMGGS 203
D+ LA L+ + NY+ A RP + + V G+
Sbjct: 99 NDIHALAAKLLQENDTTLVKTKELIKNYI-----TARIMAKRPFDKKSNSALFRAVGEGN 153
Query: 204 STINYMIYA-RGNAEDY-DE----WEAMGNEGWGYDEVLEYFKKSEDNEDKEIY---HKN 254
+ + I+ +GN +DY +E ++ Y ++ K E+
Sbjct: 154 AQL-VAIFGGQGNTDDYFEELRDLYQT-------YHVLVGDLIKFSAETLSELIRTTLDA 205
Query: 255 PEYHGKGGYQTVEWLPYADK--------NLPV---LI---------KAWKEKGYPERDLN 294
+ +G +EWL ++P+ LI K G+ +L
Sbjct: 206 EKVFTQG-LNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELR 264
Query: 295 AENQIGVMHLQTTTRHGERL---------STNGAFIRPIRKKRKNLTIL----TEAHVTR 341
+ +L+ T H + L + +F +RK +T+L +
Sbjct: 265 S-------YLKGATGHSQGLVTAVAIAETDSWESFFVSVRKA---ITVLFFIGVRCYEAY 314
Query: 342 IICDKTPNKHKKLVAKSVEF-----------------FYKKKLRRARA-----KKEVISS 379
P ++ S+E + + + + K+ IS
Sbjct: 315 PNTSLPP----SILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEIS- 369
Query: 380 AGAINSPKILMLSGIGPKDHLTSLNIKTLVDLKVGHNL-QDHLTSDGIVIAFPKTATDRM 438
+N K L++SG P+ L LN+ TL K L Q I F + R
Sbjct: 370 --LVNGAKNLVVSG-PPQS-LYGLNL-TLRKAKAPSGLDQSR-------IPFSE----R- 412
Query: 439 YKKKVSDAFEYKESRCGPLASTGPLQCGVF-------AKTKLADSLDVPDIQFHHDPMSV 491
K K S+ F L P F A + L ++ F+ + +
Sbjct: 413 -KLKFSNRF---------LPVASP-----FHSHLLVPASDLINKDLVKNNVSFNAKDIQI 457
Query: 492 RDWITNPVNASSTNMSPFAYYDGITVRPILLKPKSRGYIQLNATDPL-W 539
PV + +DG +R +L S + P+ W
Sbjct: 458 ------PV---------YDTFDGSDLR-VLSGSISERIVDCIIRLPVKW 490
>3utf_A UDP-galactopyranose mutase; nucleotide binding, flavin adenine
dinucleotide BIND isomerase; HET: FDA; 2.25A
{Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A*
3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A*
Length = 513
Score = 47.9 bits (113), Expect = 6e-06
Identities = 11/35 (31%), Positives = 22/35 (62%)
Query: 115 DMTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEA 149
D++ D ++IGAG G A RL++I +++++
Sbjct: 8 DISVDVLVIGAGPTGLGAAKRLNQIDGPSWMIVDS 42
>3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase;
HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB:
3hdy_A* 3he3_A* 3mj4_A*
Length = 397
Score = 47.1 bits (111), Expect = 1e-05
Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 95 QSNEGYDKDHKNNNREEQDDDMTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEA 149
S ++ + N EQ + FD++I+GAG AG VLA RL+ +VL+++
Sbjct: 7 PSAVTNERTEQTNTTNEQQESKGFDYLIVGAGFAGSVLAERLAS-SGQRVLIVDR 60
>1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD BCN;
2.25A {Mycobacterium tuberculosis}
Length = 399
Score = 45.1 bits (106), Expect = 4e-05
Identities = 11/31 (35%), Positives = 19/31 (61%)
Query: 118 FDFIIIGAGSAGCVLANRLSEIKKWKVLLLE 148
FD ++G+G G +A R++ +VL+LE
Sbjct: 8 FDLFVVGSGFFGLTIAERVATQLDKRVLVLE 38
>1yvv_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4,
X-RAY, structure, PSI, protein structure initiative;
HET: FAD; 2.50A {Pseudomonas syringae} PDB: 3kkj_A*
Length = 336
Score = 44.3 bits (103), Expect = 6e-05
Identities = 12/35 (34%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 116 MTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAG 150
MT IIG G AG A L+ +V L +
Sbjct: 1 MTVPIAIIGTGIAGLSAAQALTA-AGHQVHLFDKS 34
>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX),
oxidative demethylation of N-methyl-L-tryptophan, FAD,
flavoenzyme; HET: FAD; 3.2A {Escherichia coli}
Length = 372
Score = 43.9 bits (104), Expect = 1e-04
Identities = 12/35 (34%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 116 MTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAG 150
M +D IIIG+GS G + VL+ +A
Sbjct: 1 MKYDLIIIGSGSVGAAAGYYATR-AGLNVLMTDAH 34
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 43.7 bits (102), Expect = 2e-04
Identities = 58/476 (12%), Positives = 114/476 (23%), Gaps = 178/476 (37%)
Query: 47 GKSV---DSSDSHPAGS--------LEVNSYRSAEDVSHILGDTFLKAYDNTGHKKRPEQ 95
GK+ D S+ L + + S E V +L + N R +
Sbjct: 162 GKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPN--WTSRSDH 219
Query: 96 S-------NEGYD--------KDHKN--------NNREEQDDDMTFDFIIIGAGSAGC-V 131
S + K ++N N + + F+ C +
Sbjct: 220 SSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWN---AFNL--------SCKI 268
Query: 132 L--------ANRLSEIKKWKVLL--LEAGIEEP----FFADVPGLAPLISRSNIDWNYMT 177
L + LS + L + P
Sbjct: 269 LLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRP-----------QD 317
Query: 178 MPEPHACKARPNGRCYWARGKVMGGSSTINYMIYA--RGNAEDYDEWEAMGNEGWGYDEV 235
+P P + + +I R +D W+ + D++
Sbjct: 318 LP-REVLTTNP---------RRLS-------IIAESIRDGLATWDNWKHVN-----CDKL 355
Query: 236 LEYFKKSEDNEDKEIYHKNPEYHGKGGYQTVEWLPYADKNLP--VLIKAWKEKGY--PER 291
+ S + + Y K + + P ++P +L W +
Sbjct: 356 TTIIESSLNVLEPAEYRKM--------FDRLSVFPP-SAHIPTILLSLIWFDVIKSDVMV 406
Query: 292 DLNAENQIGVMHLQTTTRHGERLSTNGAFIRPIRKKRKNLTILTEAH----VTRIICDKT 347
+N L H L + K+ K TI ++ +
Sbjct: 407 VVN--------KL-----HKYSL---------VEKQPKESTI--SIPSIYLELKVKLENE 442
Query: 348 PNKHKKLVAKSVEFFYKKKLRRARAKKEVISSAGAINSPKILMLSG-----IGPKDHLTS 402
H+ +V Y + + + L IG HL +
Sbjct: 443 YALHRSIVDH-----Y--NIPKTFDS----------DDLIPPYLDQYFYSHIG--HHLKN 483
Query: 403 LNI--------KTLVDLKVGHNLQDHLTSDGIVIAFPKTATD-----RMYKKKVSD 445
+ +D + L+ + D + + + YK + D
Sbjct: 484 IEHPERMTLFRMVFLDFRF---LEQKIRHDSTAWNASGSILNTLQQLKFYKPYICD 536
Score = 36.8 bits (84), Expect = 0.020
Identities = 46/364 (12%), Positives = 103/364 (28%), Gaps = 79/364 (21%)
Query: 218 DYDEWEAMGNEGWGYDEVLEYFKKS--EDNEDKEIYHKNPEYHGKGGYQTVEWLPYADKN 275
D++ G + Y ++L F+ + ++ + K++ K + A
Sbjct: 8 DFE----TGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSG 63
Query: 276 LPVLIKAWKEKGYPERDLNAENQIGVMHLQTTTRHGERLSTNGAFI-RPIRKKRKNLTIL 334
L K E + E L N F+ PI+ +++ +++
Sbjct: 64 TLRLFWTLLSKQ--------EEMVQKFV-------EEVLRINYKFLMSPIKTEQRQPSMM 108
Query: 335 TEAHVTRIICDKTPNKHKKLVAKSVEFFYKKKLRRARAKKEVISSAGAINSPKILML--- 391
T ++ + D+ N + F K + R + ++ + + K +++
Sbjct: 109 TRMYIEQR--DRLYN--------DNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGV 158
Query: 392 SGIGPKDHLTSLNIKTLVDLKVGHNLQDHLTSDGIV-IAFPKTATDR--------MYKKK 442
G G K T + + + KV + I + + + +
Sbjct: 159 LGSG-K---TWVALDVCLSYKVQCKM-----DFKIFWLNLKNCNSPETVLEMLQKLLYQI 209
Query: 443 VSDAFEYKESRCGPLASTGPLQCGV---FAKTKLADSLDVPDIQFHHDPMSVRD-WITNP 498
+ + +Q + + L V + V++ N
Sbjct: 210 DPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLL-----N---VQNAKAWNA 261
Query: 499 VNAS------STNMSPFAYYDGITVRPILLKPKSRGYIQLNATDPLWGPPLIFPKFFTKK 552
N S + + T I L S + K+ +
Sbjct: 262 FNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKS-------LLLKYLDCR 314
Query: 553 P-DL 555
P DL
Sbjct: 315 PQDL 318
>2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase
type II family, thiazole synthase, mitochondria DNA
repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} SCOP:
c.3.1.6 PDB: 3fpz_A*
Length = 326
Score = 42.5 bits (99), Expect = 2e-04
Identities = 13/44 (29%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 110 EEQDDDMTFDFIIIGAGSAGCVLANRLSEIKK-WKVLLLEAGIE 152
++ D D II+GAGS+G A +++ + KV ++E+ +
Sbjct: 58 KDLDKFAVSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVA 101
>3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein;
HET: AHZ; 2.70A {Neurospora crassa}
Length = 344
Score = 42.1 bits (98), Expect = 4e-04
Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 110 EEQDDDMTFDFIIIGAGSAGCVLANRLSEIKK-WKVLLLEAGIE 152
+ D D +I+GAGS G A LS ++ ++ ++EAG+
Sbjct: 72 ADLDAHAETDIVIVGAGSCGLSAAYVLSTLRPDLRITIVEAGVA 115
>1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase,
isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP:
c.4.1.3 d.16.1.7
Length = 367
Score = 42.0 bits (98), Expect = 4e-04
Identities = 14/32 (43%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Query: 118 FDFIIIGAGSAGCVLANRLSEIKKWKVLLLEA 149
+D+II+G+G G V AN L + KVL++E
Sbjct: 2 YDYIIVGSGLFGAVCANELKK-LNKKVLVIEK 32
>2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase,
lipopolysaccharide biosynthesi; HET: FAD; 2.0A
{Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB:
2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A*
Length = 384
Score = 42.0 bits (98), Expect = 4e-04
Identities = 10/33 (30%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Query: 117 TFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEA 149
+ +I+GAG +G V+ +L+E K +V +++
Sbjct: 3 SKKILIVGAGFSGAVIGRQLAE-KGHQVHIIDQ 34
>3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A
{Aeropyrum pernix} PDB: 3vqr_A*
Length = 448
Score = 41.7 bits (98), Expect = 4e-04
Identities = 13/50 (26%), Positives = 21/50 (42%)
Query: 101 DKDHKNNNREEQDDDMTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAG 150
H + FD++++GAG G A L VL+++AG
Sbjct: 7 HHHHSSGLVPRGSHMPRFDYVVVGAGVVGLAAAYYLKVWSGGSVLVVDAG 56
>2x8g_A Thioredoxin glutathione reductase; redox-active center,
detoxification pathway, oxidoreductase, flavoprotein;
HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A*
2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*
Length = 598
Score = 41.9 bits (99), Expect = 5e-04
Identities = 23/148 (15%), Positives = 50/148 (33%), Gaps = 20/148 (13%)
Query: 17 NFLEGFENIFDSNFVSLFNKDSDESKQGQQGKSVDSSDSHPAGSLEVNSYRSAEDVSHIL 76
+ DS V LF+K + ++ K V + ++E++ + + L
Sbjct: 6 GTSQWLRKTVDSAAVILFSKTTCP--YCKKVKDVLAEAKIKHATIELDQLSNGSAIQKCL 63
Query: 77 GDTFLKAYDNTGHKKRPEQ-SNEGYDKDHKNNNREEQDDDMT---------FDFIIIGAG 126
+ + P+ + D + + +D++ +D I+IG G
Sbjct: 64 ASF-------SKIETVPQMFVRGKFIGDSQTVLKYYSNDELAGIVNESKYDYDLIVIGGG 116
Query: 127 SAGCVLANRLSEIKKWKVLLLEAGIEEP 154
S G ++ K +L+ P
Sbjct: 117 SGGLAAGKEAAKYGA-KTAVLDYVEPTP 143
>3cgv_A Geranylgeranyl reductase related protein; NP_393992.1,
geranylgeranyl bacteriochlorophyll reductase- like FIXC
homolog; HET: MSE FAD UNL; 1.60A {Thermoplasma
acidophilum dsm 1728} PDB: 3oz2_A*
Length = 397
Score = 41.6 bits (98), Expect = 6e-04
Identities = 10/38 (26%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Query: 117 TFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIEEP 154
T+D +++G G G A ++ K L++E E
Sbjct: 4 TYDVLVVGGGPGGSTAARYAAK-YGLKTLMIEKRPEIG 40
>4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine
dinucleotide, isomerase; HET: FAD UDP; 2.25A
{Trypanosoma cruzi} PDB: 4dsh_A*
Length = 484
Score = 41.0 bits (95), Expect = 8e-04
Identities = 13/34 (38%), Positives = 17/34 (50%)
Query: 116 MTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEA 149
+T +IIGAG G A RL+E+ L E
Sbjct: 8 LTPKIVIIGAGPTGLGAAVRLTELGYKNWHLYEC 41
>3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural
genomics, PSI-2, protein structure initiative; HET: ADP;
2.40A {Deinococcus radiodurans R1}
Length = 405
Score = 40.8 bits (94), Expect = 9e-04
Identities = 14/59 (23%), Positives = 23/59 (38%), Gaps = 1/59 (1%)
Query: 93 PEQSNEGYDKDHKNNNREEQDDDMTFDFIIIGAGSAGCVLANRLSEIKK-WKVLLLEAG 150
P + + + FD ++IGAG G A L ++ +LL+E G
Sbjct: 12 PPDPTPPRRAGSVWAHVGQHFTEEAFDIVVIGAGRMGAACAFYLRQLAPGRSLLLVEEG 70
>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus}
Length = 512
Score = 40.7 bits (95), Expect = 0.001
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 4/45 (8%)
Query: 117 TFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIEEPFFADVPG 161
FD I+IG G G LA+ ++ + +VLLLE E F G
Sbjct: 7 VFDLIVIGGGPGGSTLASFVAM-RGHRVLLLER---EAFPRHQIG 47
>3atr_A Conserved archaeal protein; saturating double bonds, archaeal
membrane precursor, like 2 geranylgeranylglyceryl
phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius}
PDB: 3atq_A*
Length = 453
Score = 40.6 bits (95), Expect = 0.001
Identities = 13/37 (35%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Query: 114 DDMTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAG 150
++ +D +IIG G AG A +LS + K+LL+++
Sbjct: 3 KELKYDVLIIGGGFAGSSAAYQLSR-RGLKILLVDSK 38
>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex,
biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis
thaliana} SCOP: c.3.1.6
Length = 284
Score = 39.7 bits (92), Expect = 0.002
Identities = 11/43 (25%), Positives = 21/43 (48%)
Query: 110 EEQDDDMTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIE 152
+ D +++GAGSAG A +S+ +V ++E +
Sbjct: 32 TDMITYAETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVS 74
>3p1w_A Rabgdi protein; GDI RAB, malaria, structural genomics consortium,
SGC, trans PF10_0345, protein transport; 1.85A
{Plasmodium falciparum 3D7}
Length = 475
Score = 39.5 bits (91), Expect = 0.003
Identities = 23/127 (18%), Positives = 42/127 (33%), Gaps = 13/127 (10%)
Query: 104 HKNNNREEQDDDMT-FDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIEEPFFADVPG- 161
H ++ RE +D II+G G C+L+ LS K +L+L+ G
Sbjct: 6 HHSSGRENLYFQGEHYDVIILGTGLKECILSGLLSHYGKK-ILVLDRN-------PYYGG 57
Query: 162 -LAPLISRSNIDWNYMTMPEPHACKARPNGRCYWARGKVMGGSSTINYMIYARGNAEDYD 220
A L + + P + ++ G + + + +Y
Sbjct: 58 ETASLNLTNLYNTFKPKENIPSKYGENRHWNVDLIPKFILVGGNLVKILKKT--RVTNYL 115
Query: 221 EWEAMGN 227
EW +
Sbjct: 116 EWLVVEG 122
>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET:
FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A*
2q6u_A*
Length = 397
Score = 39.0 bits (91), Expect = 0.003
Identities = 10/34 (29%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 117 TFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAG 150
++D +++G G G A +++E + +VL+LE
Sbjct: 4 SYDVVVVGGGPVGLATAWQVAE-RGHRVLVLERH 36
>3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET:
FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A*
3nyf_A* 3sm8_A*
Length = 381
Score = 38.8 bits (91), Expect = 0.004
Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Query: 116 MTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEA 149
+ D+++IGAG AG LS +V++LE
Sbjct: 8 IEADYLVIGAGIAGASTGYWLS--AHGRVVVLER 39
>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A
{Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Length = 500
Score = 38.8 bits (91), Expect = 0.005
Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 116 MTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAG 150
M +D I+IG GS G A R + KV L+E
Sbjct: 1 MVYDLIVIGGGSGGMAAARRAARHNA-KVALVEKS 34
>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD;
1.75A {Pseudomonas aeruginosa}
Length = 399
Score = 38.0 bits (89), Expect = 0.006
Identities = 14/50 (28%), Positives = 21/50 (42%), Gaps = 1/50 (2%)
Query: 115 DMTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIEEPFFADVPGLAP 164
D D +I G G G +LA L + +V+++E E L P
Sbjct: 4 DNHIDVLINGCGIGGAMLAYLLGR-QGHRVVVVEQARRERAINGADLLKP 52
>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein
structure initiative, northeast structural genomics
consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii}
Length = 421
Score = 38.2 bits (89), Expect = 0.007
Identities = 12/33 (36%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Query: 118 FDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAG 150
D ++IGAG AG V A+ +++ +KV ++E
Sbjct: 6 VDVLVIGAGPAGTVAASLVNK-SGFKVKIVEKQ 37
>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome,
mesaconate, oxidoreductase; HET: HEM FAD; 1.50A
{Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4
d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A*
1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A*
1q9i_A* 1lj1_A*
Length = 571
Score = 37.7 bits (88), Expect = 0.010
Identities = 25/116 (21%), Positives = 43/116 (37%), Gaps = 5/116 (4%)
Query: 37 DSDESKQGQQGKSVDSSDSHPAGSLEVNSYRSAEDVSHILGD---TFLKAYDNTGHKKRP 93
E + + + ++ SH G + S SA + S + D +F R
Sbjct: 42 TLAEVAETTKHEHYNAHASHFPGEVACTSCHSAHEKSMVYCDSCHSFDFNMPYAKKWLRD 101
Query: 94 EQSNEGYDKDHKNNNREE-QDDDMTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLE 148
E + KD T D +++G+G AG A ++ KV+L+E
Sbjct: 102 EPTIAELAKDKSERQAALASAPHDTVDVVVVGSGGAGFSAAISATDSGA-KVILIE 156
>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor
2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus
SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A*
1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A*
3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A*
1l9d_A* 1zov_A*
Length = 389
Score = 37.3 bits (87), Expect = 0.010
Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 117 TFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAG 150
FD I++GAGS G +L++ + K LL++A
Sbjct: 3 HFDVIVVGAGSMGMAAGYQLAK-QGVKTLLVDAF 35
>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity,
oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile}
PDB: 2rab_A*
Length = 463
Score = 37.5 bits (88), Expect = 0.011
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 3/37 (8%)
Query: 116 MTFDF--IIIGAGSAGCVLANRLSEIKKWKVLLLEAG 150
MT F I IG GS G +A + + K +V L+E+
Sbjct: 1 MTQHFDLIAIGGGSGGLAVAEKAAAFGK-RVALIESK 36
>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2,
protein structure initiative, midwest center for
structural genomics, MCSG; HET: FAD; 1.84A {Bacillus
cereus} SCOP: c.3.1.8 e.74.1.1
Length = 447
Score = 37.5 bits (88), Expect = 0.012
Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 102 KDHKNNNREEQDDDMTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAG 150
D N Q + M +D I+IG G +G + A +E VLLL+ G
Sbjct: 11 VDLGTENLYFQSNAMHYDVIVIGGGPSGLMAAIGAAEEGA-NVLLLDKG 58
>1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD biosynthesis, FAD,
oxidoreductase; 2.20A {Escherichia coli} SCOP: a.7.3.1
c.3.1.4 d.168.1.1 PDB: 1knr_A* 1knp_A*
Length = 540
Score = 37.2 bits (87), Expect = 0.014
Identities = 13/31 (41%), Positives = 23/31 (74%), Gaps = 2/31 (6%)
Query: 117 TFDFIIIGAGSAGCVLANRLSEIKKWKVLLL 147
+ D +IIG+G+AG LA RL++ + +V++L
Sbjct: 8 SCDVLIIGSGAAGLSLALRLAD--QHQVIVL 36
>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide,
acetylation, alternative initiation, cytoplasm, FAD,
flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A
{Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A*
1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A*
3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A*
1xan_A* 5grt_A* ...
Length = 478
Score = 37.1 bits (87), Expect = 0.016
Identities = 9/51 (17%), Positives = 19/51 (37%), Gaps = 3/51 (5%)
Query: 102 KDHKNNNREEQDDDMTFDF--IIIGAGSAGCVLANRLSEIKKWKVLLLEAG 150
+ + ++IG GS G A R +E+ + ++E+
Sbjct: 3 RQEPQPQGPPPAAGAVASYDYLVIGGGSGGLASARRAAELGA-RAAVVESH 52
>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates,
flavoenzymes, nicotine degradation, oxidoreductase; HET:
FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB:
3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X*
3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A*
Length = 431
Score = 36.7 bits (85), Expect = 0.016
Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Query: 118 FDFIIIGAGSAGCVLANRLSEIKKWKVLLLEA 149
+D I++G G +G A L+ KVLLLE
Sbjct: 2 YDAIVVGGGFSGLKAARDLTN-AGKKVLLLEG 32
>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex,
rossmann fold, HO pyridine nucleotide disulfide
oxidoreductase, electron TRAN oxidoreductase; HET: FAD;
2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A*
2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*
Length = 519
Score = 36.8 bits (86), Expect = 0.017
Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Query: 106 NNNREEQDDDMTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIEEP 154
N E+ +D IIIG GS G A ++ K KV++L+ P
Sbjct: 21 MNGPEDLPKSYDYDLIIIGGGSGGLAAAKEAAQYGK-KVMVLDFVTPTP 68
>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase,
rossmann, flavoprotein, alternative initiati
mitochondrion, NADP; HET: FAD; 1.75A {Drosophila
melanogaster} PDB: 2nvk_X* 3dh9_A*
Length = 483
Score = 36.8 bits (86), Expect = 0.018
Identities = 13/45 (28%), Positives = 18/45 (40%), Gaps = 1/45 (2%)
Query: 118 FDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIEEPFFADVPGL 162
+D I+IG GSAG A +V L+ P G+
Sbjct: 10 YDLIVIGGGSAGLACAKEAVLNGA-RVACLDFVKPTPTLGTKWGV 53
>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol
biosynthesis, halogenation reaction, structural
genomics; HET: FAD; 2.20A {Streptomyces venezuelae}
Length = 591
Score = 36.9 bits (85), Expect = 0.019
Identities = 12/45 (26%), Positives = 14/45 (31%), Gaps = 4/45 (8%)
Query: 117 TFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIEEPFFADVPG 161
IIG G AG V L + V + E F G
Sbjct: 23 RSKVAIIGGGPAGSVAGLTLHK-LGHDVTIYER---SAFPRYRVG 63
>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed
with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A
{Saccharomyces cerevisiae}
Length = 479
Score = 36.3 bits (85), Expect = 0.022
Identities = 13/38 (34%), Positives = 18/38 (47%), Gaps = 3/38 (7%)
Query: 115 DMTFDF--IIIGAGSAGCVLANRLSEIKKWKVLLLEAG 150
T + ++IG GS G A R + K LL+EA
Sbjct: 7 TNTKHYDYLVIGGGSGGVASARRAASYGA-KTLLVEAK 43
>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A
{Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB:
1geu_A* 1ger_A* 1get_A*
Length = 450
Score = 36.3 bits (85), Expect = 0.024
Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 3/37 (8%)
Query: 116 MTFDF--IIIGAGSAGCVLANRLSEIKKWKVLLLEAG 150
MT + I IG GS G NR + + K L+EA
Sbjct: 1 MTKHYDYIAIGGGSGGIASINRAAMYGQ-KCALIEAK 36
>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT
structure initiative, northeast structural genomics
consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis}
Length = 369
Score = 36.0 bits (84), Expect = 0.026
Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 117 TFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEA 149
D I+IGAG G +A L+ +VL+ EA
Sbjct: 4 DIDCIVIGAGVVGLAIARALAA-GGHEVLVAEA 35
>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein,
FAD, mitochondrion, redox-active center, selenium,
selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus
musculus} PDB: 1zkq_A* 1zdl_A*
Length = 488
Score = 36.0 bits (84), Expect = 0.028
Identities = 12/37 (32%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Query: 118 FDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIEEP 154
FD ++IG GS G A +++ K KV + + P
Sbjct: 7 FDLLVIGGGSGGLACAKEAAQLGK-KVAVADYVEPSP 42
>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis,
chlorophyll biosynthesis, oxidoreductase, HAEM
biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A
{Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A*
Length = 478
Score = 36.1 bits (83), Expect = 0.031
Identities = 10/48 (20%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Query: 103 DHKNNNREEQDDDMTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAG 150
DH +++ + ++G G +G +A+ L + +LLE+
Sbjct: 2 DHHHHHHHHMPRTTGMNVAVVGGGISGLAVAHHLRS-RGTDAVLLESS 48
>4dna_A Probable glutathione reductase; structural genomics, protein
structure initiative, NEW YORK structural genomix
research consortium; HET: FAD; 2.80A {Sinorhizobium
meliloti}
Length = 463
Score = 35.9 bits (84), Expect = 0.034
Identities = 11/38 (28%), Positives = 17/38 (44%), Gaps = 4/38 (10%)
Query: 116 MT---FDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAG 150
M+ +D +IG GS G + + K KV + E
Sbjct: 1 MSAFDYDLFVIGGGSGGVRSGRLAAALGK-KVAIAEEF 37
>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD;
HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB:
2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A*
Length = 424
Score = 35.6 bits (82), Expect = 0.043
Identities = 10/31 (32%), Positives = 12/31 (38%)
Query: 119 DFIIIGAGSAGCVLANRLSEIKKWKVLLLEA 149
IIGAG AG L + +LE
Sbjct: 8 RIAIIGAGPAGLAAGMYLEQAGFHDYTILER 38
>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping
sickness, flavoPro redox-active center; HET: FAD WPF;
1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A*
2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A*
1bzl_A* 1aog_A*
Length = 495
Score = 35.6 bits (83), Expect = 0.043
Identities = 9/43 (20%), Positives = 18/43 (41%), Gaps = 2/43 (4%)
Query: 114 DDMTFDF--IIIGAGSAGCVLANRLSEIKKWKVLLLEAGIEEP 154
M+ F ++IGAGS G + + +V +++
Sbjct: 2 SHMSKAFDLVVIGAGSGGLEAGWNAATLYGKRVAVVDVQTSHG 44
>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD;
2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4
d.168.1.1 PDB: 1d4e_A* 1d4c_A*
Length = 572
Score = 35.5 bits (82), Expect = 0.043
Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Query: 111 EQDDDMTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLE 148
T D +IIG+G AG A + KV+LLE
Sbjct: 120 AAGVKETTDVVIIGSGGAGLAAAVSARDAGA-KVILLE 156
>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase,
inhibitor binding, rasagiline, enantioselectivity,
oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP:
c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A*
1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A*
2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A*
2v61_A* 2vrl_A* ...
Length = 520
Score = 35.6 bits (82), Expect = 0.045
Identities = 10/33 (30%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 117 TFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEA 149
D +++G G +G A L + V++LEA
Sbjct: 4 KCDVVVVGGGISGMAAAKLLHD-SGLNVVVLEA 35
>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex,
oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis}
SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*
Length = 382
Score = 35.3 bits (82), Expect = 0.046
Identities = 11/49 (22%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
Query: 104 HKNNNREEQDDDM--TFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAG 150
H +++ + M ++ ++IG G G +A L++ + L E+G
Sbjct: 2 HHHHHHMARIRAMKRHYEAVVIGGGIIGSAIAYYLAK-ENKNTALFESG 49
>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM
FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3
c.3.1.4 d.168.1.1
Length = 566
Score = 35.4 bits (82), Expect = 0.055
Identities = 13/56 (23%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
Query: 93 PEQSNEGYDKDHKNNNREEQDDDMTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLE 148
+ ++G+D+D K T +++GAGSAG + + V+L++
Sbjct: 98 KKSWDDGWDQD-KIQKAIAAGPSETTQVLVVGAGSAGFNASLAAKKAGA-NVILVD 151
>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle
structural genomics center for infectious gluathione
reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella
henselae}
Length = 484
Score = 35.2 bits (82), Expect = 0.056
Identities = 11/33 (33%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Query: 118 FDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAG 150
FD +IG+GS G A + K +V + E
Sbjct: 27 FDLFVIGSGSGGVRAARLAGALGK-RVAIAEEY 58
>2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase,
geranylgeranylation, vesicular transport, protein
transport; HET: GDP GER; 1.48A {Saccharomyces
cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G*
3cpi_G 3cph_G 3cpj_G*
Length = 453
Score = 35.2 bits (80), Expect = 0.057
Identities = 13/42 (30%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 108 NREEQDDDMTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEA 149
+ +++ D +D I++G G C+L+ LS K KVL ++
Sbjct: 2 HMDQETIDTDYDVIVLGTGITECILSGLLSVDGK-KVLHIDK 42
>1fec_A Trypanothione reductase; redox-active center, oxidoreductase,
flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia
fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A*
1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A*
2x50_A* 2ve2_A*
Length = 490
Score = 34.8 bits (81), Expect = 0.064
Identities = 9/37 (24%), Positives = 18/37 (48%)
Query: 118 FDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIEEP 154
+D ++IGAGS G + + K +V +++
Sbjct: 4 YDLVVIGAGSGGLEAGWNAASLHKKRVAVIDLQKHHG 40
>2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme,
electron transfer, folate-ME enzyme, oxidoreductase;
HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia}
PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B*
3ada_B*
Length = 405
Score = 34.9 bits (81), Expect = 0.068
Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 117 TFDFIIIGAGSAGCVLANRLSEIKKWK-VLLLEAG 150
++D II+G G G A L++ V +LE G
Sbjct: 21 SYDAIIVGGGGHGLATAYFLAKNHGITNVAVLEKG 55
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 33.8 bits (76), Expect = 0.069
Identities = 9/34 (26%), Positives = 15/34 (44%), Gaps = 10/34 (29%)
Query: 43 QGQQGKSVDSS------DSHPAGSLEVNSYRSAE 70
+ Q K + +S DS PA L + + + E
Sbjct: 18 EKQALKKLQASLKLYADDSAPA--LAIKA--TME 47
Score = 31.5 bits (70), Expect = 0.39
Identities = 11/28 (39%), Positives = 14/28 (50%), Gaps = 6/28 (21%)
Query: 264 QTVEWL-----PYADKNLPVL-IKAWKE 285
Q ++ L YAD + P L IKA E
Sbjct: 20 QALKKLQASLKLYADDSAPALAIKATME 47
>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A
{Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A*
2yg7_A* 3rha_A*
Length = 453
Score = 34.7 bits (80), Expect = 0.079
Identities = 11/34 (32%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 116 MTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEA 149
+ D I+GAG +G A L + V ++EA
Sbjct: 4 LQRDVAIVGAGPSGLAAATALRK-AGLSVAVIEA 36
>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin
contain oxidoreductase, monoamine oxidase, NAD,
extracellular, oxidoreductase; HET: FAD; 2.50A {Homo
sapiens}
Length = 342
Score = 34.3 bits (77), Expect = 0.084
Identities = 7/34 (20%), Positives = 13/34 (38%), Gaps = 2/34 (5%)
Query: 119 DFIIIGAGSAGCVLANRLSE--IKKWKVLLLEAG 150
+I+GAG G + A L + + +
Sbjct: 3 QVLIVGAGMTGSLCAALLRRQTSGPLYLAVWDKA 36
>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD
NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A*
4aos_A* 4ap1_A*
Length = 549
Score = 34.5 bits (80), Expect = 0.084
Identities = 11/52 (21%), Positives = 19/52 (36%), Gaps = 1/52 (1%)
Query: 99 GYDKDHKNNNREEQDDDMTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAG 150
G + ++D +++GAG AG +R + V EA
Sbjct: 3 GQHPRSVVTAPDATTGTTSYDVVVVGAGIAGLYAIHRFRS-QGLTVRAFEAA 53
>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase,
oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa}
PDB: 1zx9_A*
Length = 467
Score = 34.4 bits (80), Expect = 0.096
Identities = 10/36 (27%), Positives = 16/36 (44%), Gaps = 1/36 (2%)
Query: 115 DMTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAG 150
+ +IG+G A A + E +V L+E G
Sbjct: 2 EPPVQVAVIGSGGAAMAAALKAVEQGA-QVTLIERG 36
>1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution,
hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3
d.16.1.6 PDB: 1lv0_A* 1gnd_A
Length = 433
Score = 34.5 bits (78), Expect = 0.10
Identities = 11/35 (31%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 115 DMTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEA 149
D +D I++G G C+L+ +S KVL ++
Sbjct: 4 DEEYDVIVLGTGLTECILSGIMSV-NGKKVLHMDR 37
>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate
porphyria disease, VP oxidoreductase-oxidoreductase
inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens}
Length = 477
Score = 33.9 bits (77), Expect = 0.14
Identities = 10/36 (27%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 116 MTFDFIIIGAGSAGCVLANRLSEI-KKWKVLLLEAG 150
M +++G G +G + LS KV+L+E+
Sbjct: 1 MGRTVVVLGGGISGLAASYHLSRAPCPPKVVLVESS 36
>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG
FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8
d.58.1.6 PDB: 2gmj_A*
Length = 584
Score = 34.0 bits (78), Expect = 0.15
Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 5/57 (8%)
Query: 101 DKDHKNNNREEQDDDMTFDFIIIGAGSAGCVLANRLSEI-----KKWKVLLLEAGIE 152
D+D + + D +I+GAG AG A RL ++ K +V L+E
Sbjct: 19 DQDKRWEGVNMERFAEEADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAH 75
>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding,
para-hydroxy-benzoate-hydroxylase fold (PHBH- fold),
monotopic membrane-binding domain; HET: FAD OMN TON;
2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5
Length = 504
Score = 33.6 bits (76), Expect = 0.17
Identities = 10/32 (31%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
Query: 119 DFIIIGAGSAGCVLANRLSEIKKWKVLLLEAG 150
+IGAG +G A +L V + EA
Sbjct: 15 RVAVIGAGVSGLAAAYKLKI-HGLNVTVFEAE 45
>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome,
transcription, LSD1, alternative splicing, chromatin
regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens}
SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A*
3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A*
2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A
Length = 662
Score = 33.7 bits (76), Expect = 0.18
Identities = 15/51 (29%), Positives = 19/51 (37%), Gaps = 1/51 (1%)
Query: 99 GYDKDHKNNNREEQDDDMTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEA 149
G + T IIIG+G +G A +L V LLEA
Sbjct: 89 GLINFGIYKRIKPLPTKKTGKVIIIGSGVSGLAAARQLQS-FGMDVTLLEA 138
>1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A
{Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A*
3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A*
3cnt_B* 1yy5_A* 1xpq_A*
Length = 516
Score = 33.6 bits (76), Expect = 0.19
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 119 DFIIIGAGSAGCVLANRLSEIKKWKVLLLEA 149
IIIGAG AG A+ L + L+LEA
Sbjct: 10 KVIIIGAGIAGLKAASTLHQNGIQDCLVLEA 40
>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing
protein, flavoprotein, PS protein structure initiative;
HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8
e.74.1.1
Length = 401
Score = 33.2 bits (77), Expect = 0.19
Identities = 12/33 (36%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Query: 116 MTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLE 148
+ IIIGAG+AG A +L+++ K V + +
Sbjct: 3 QYSENIIIGAGAAGLFCAAQLAKLGK-SVTVFD 34
>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase,
enantioselectivity, directed evolution variant; HET:
FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G*
Length = 495
Score = 33.4 bits (76), Expect = 0.22
Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 108 NREEQDDDMTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEA 149
N E+ D D +D I+IG G G L+ +K LLLEA
Sbjct: 30 NIEDTDKDGPWDVIVIGGGYCGLTATRDLTV-AGFKTLLLEA 70
>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex,
oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus
horikoshii}
Length = 382
Score = 32.9 bits (76), Expect = 0.24
Identities = 8/34 (23%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 117 TFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAG 150
+ ++IG G G +A+ L++ + +V ++E
Sbjct: 5 KSEIVVIGGGIVGVTIAHELAK-RGEEVTVIEKR 37
>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis
baeyer-villiger oxidation green CH monooxygenase,
oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP}
PDB: 3gwd_A* 3ucl_A*
Length = 540
Score = 33.3 bits (77), Expect = 0.24
Identities = 8/34 (23%), Positives = 14/34 (41%)
Query: 117 TFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAG 150
T D ++IGAG G ++L + +
Sbjct: 8 TVDAVVIGAGFGGIYAVHKLHHELGLTTVGFDKA 41
>3h28_A Sulfide-quinone reductase; monotopic membrane protein,
flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ
LMT; 2.00A {Aquifex aeolicus} PDB: 3h27_A* 3h29_A*
3hyv_A* 3hyw_A* 3hyx_A*
Length = 430
Score = 33.2 bits (76), Expect = 0.24
Identities = 16/68 (23%), Positives = 26/68 (38%), Gaps = 15/68 (22%)
Query: 121 IIIGAGSAGCVLANRLSE-IKKWKVLLLEAG---IEEPFFADVPG-----------LAPL 165
++IG G G A L + K+ L+ P F + LAPL
Sbjct: 6 VVIGGGVGGIATAYNLRNLMPDLKITLISDRPYFGFTPAFPHLAMGWRKFEDISVPLAPL 65
Query: 166 ISRSNIDW 173
+ + NI++
Sbjct: 66 LPKFNIEF 73
>1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase,
oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays}
SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A*
1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A*
Length = 472
Score = 32.9 bits (75), Expect = 0.25
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 119 DFIIIGAGSAGCVLANRLSEIKKWKVLLLEA 149
I++GAG +G A RLSE +L+LEA
Sbjct: 6 RVIVVGAGMSGISAAKRLSEAGITDLLILEA 36
>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR
initiative, midwest center for structural genomics; HET:
FAD; 2.15A {Agrobacterium tumefaciens}
Length = 297
Score = 32.5 bits (75), Expect = 0.31
Identities = 15/42 (35%), Positives = 19/42 (45%), Gaps = 13/42 (30%)
Query: 116 MTFDFIIIGAG----SAGCVL--ANRLSEIKKWKVLLLEAGI 151
M FD IIIG SA L A + +LL++AG
Sbjct: 1 MKFDVIIIGGSYAGLSAALQLGRARK-------NILLVDAGE 35
>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A
{Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A*
2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*
Length = 542
Score = 32.9 bits (76), Expect = 0.31
Identities = 10/41 (24%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
Query: 110 EEQDDDMTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAG 150
+ D +++GAG +G RL E V ++E
Sbjct: 9 SRRQPPEEVDVLVVGAGFSGLYALYRLRE-LGRSVHVIETA 48
>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin
regulator, histone inhibitor binding, methylation,
nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A
{Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A*
2xas_A* 2com_A
Length = 852
Score = 33.0 bits (74), Expect = 0.32
Identities = 14/35 (40%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 115 DMTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEA 149
T IIIG+G +G A +L V LLEA
Sbjct: 276 KKTGKVIIIGSGVSGLAAARQLQS-FGMDVTLLEA 309
>3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for
structural genomics, JCSG, protein structure INI PSI-2;
HET: FAD; 2.06A {Exiguobacterium sibiricum}
Length = 475
Score = 32.7 bits (74), Expect = 0.34
Identities = 10/33 (30%), Positives = 13/33 (39%), Gaps = 1/33 (3%)
Query: 119 DFIIIGAGSAGCVLANRLS-EIKKWKVLLLEAG 150
+I+G G G A + LLEAG
Sbjct: 6 RLVIVGGGITGLAAAYYAERAFPDLNITLLEAG 38
>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold,
oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens}
PDB: 3h8i_A*
Length = 409
Score = 32.4 bits (74), Expect = 0.36
Identities = 9/70 (12%), Positives = 20/70 (28%), Gaps = 18/70 (25%)
Query: 121 IIIGAGSAGCVLANRLSEI--KKWKVLLLE---------------AGIEEPFFADVPGLA 163
+++G A L + K V ++ G+ + V L+
Sbjct: 5 LVLGGRFGALTAAYTLKRLVGSKADVKVINKSRFSYFRPALPHVAIGVRDVDELKVD-LS 63
Query: 164 PLISRSNIDW 173
+ I +
Sbjct: 64 EALPEKGIQF 73
>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride
transfer mechanism, GR2-family, flavoenzyme, FAD
containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB:
2jb1_A* 2jb2_A* 2jb3_A*
Length = 489
Score = 32.6 bits (74), Expect = 0.37
Identities = 11/33 (33%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 117 TFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEA 149
+ +++G G AG A L + +KV +LEA
Sbjct: 11 SHSVVVLGGGPAGLCSAFELQK-AGYKVTVLEA 42
>2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical
bundle, sandwiched sheets, structural genomics; HET: TRP
FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A*
2ar8_A* 2ard_A* 2jkc_A*
Length = 538
Score = 32.7 bits (73), Expect = 0.37
Identities = 19/128 (14%), Positives = 39/128 (30%), Gaps = 10/128 (7%)
Query: 121 IIIGAGSAGCVLANRLSEI--KKWKVLLLE---AGIEEPFFADVPGLAPLISRS-NIDWN 174
+I+G G+AG + A+ L ++ + L+E A +P L + I
Sbjct: 9 VIVGGGTAGWMAASYLVRALQQQANITLIESAAIPRIGVGEATIPSLQKVFFDFLGIPER 68
Query: 175 YMTMPEPHACKARPNGRCYWARGKVMGGSSTINYMIYARGNAED---YDEWEAMGNEGWG 231
MP+ + W + ++ N + W +G+
Sbjct: 69 EW-MPQVNGAFKAAIKFVNWRKSPDPSRDDHFYHLFGNVPNCDGVPLTHYWLRKREQGFQ 127
Query: 232 YDEVLEYF 239
+
Sbjct: 128 QPMEYACY 135
>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD;
1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A*
3up4_A* 3up5_A*
Length = 545
Score = 32.6 bits (75), Expect = 0.38
Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Query: 111 EQDDDMTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAG 150
+ D ++IGAG G A +++ KVL +EAG
Sbjct: 3 NRAKSPALDAVVIGAGVTGIYQAFLINQ-AGMKVLGIEAG 41
>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent
N-hydroxylating monooxygenase, CLAS flavin dependent
monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A
{Pseudomonas aeruginosa} PDB: 3s61_A*
Length = 463
Score = 32.4 bits (73), Expect = 0.46
Identities = 19/125 (15%), Positives = 40/125 (32%), Gaps = 12/125 (9%)
Query: 104 HKNNNREEQDDDMTFDFIIIGAGSAGCVLANRLSEIKKW----KVLLLEAGIEEPFFADV 159
++ + + D I +G G + LA L E + +VL L+ + +
Sbjct: 17 RGSHMTQATATAVVHDLIGVGFGPSNIALAIALQERAQAQGALEVLFLDK---QGDYRWH 73
Query: 160 PGLAPLISRSNIDW--NYMTMPEPHACKARPNGRCYWARGKVMGGSSTINYMIYARGNAE 217
S I + + +++ P + + Y + + + R
Sbjct: 74 GNTLVSQSELQISFLKDLVSLRNP---TSPYSFVNYLHKHDRLVDFINLGTFYPCRMEFN 130
Query: 218 DYDEW 222
DY W
Sbjct: 131 DYLRW 135
>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm,
FAD, flavoprotein, oxidoreductase, porphyrin
biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis}
Length = 470
Score = 32.2 bits (73), Expect = 0.51
Identities = 10/37 (27%), Positives = 16/37 (43%), Gaps = 5/37 (13%)
Query: 119 DFIIIGAGSAGCVLANRLSEIKK-----WKVLLLEAG 150
+IIG G G A + + K ++ L+EA
Sbjct: 7 HVVIIGGGITGLAAAFYMEKEIKEKNLPLELTLVEAS 43
>1fcd_A Flavocytochrome C sulfide dehydrogenase (flavin- binding subunit);
electron transport(flavocytochrome); HET: FAD HEM; 2.53A
{Allochromatium vinosum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Length = 401
Score = 32.0 bits (73), Expect = 0.54
Identities = 7/30 (23%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Query: 121 IIIGAGSAGCVLANRLSE-IKKWKVLLLEA 149
+++G G+ G A + +V L+E
Sbjct: 6 VVVGGGTGGATAAKYIKLADPSIEVTLIEP 35
>4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase,
dehydogenase, steroid catabolism; HET: FAD; 1.60A
{Rhodococcus jostii} PDB: 4at2_A*
Length = 510
Score = 31.9 bits (73), Expect = 0.55
Identities = 10/47 (21%), Positives = 17/47 (36%), Gaps = 1/47 (2%)
Query: 102 KDHKNNNREEQDDDMTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLE 148
+ + D D ++ G G AG + + VL+LE
Sbjct: 26 PIRPRSATTVTEWDYEADVVVAGYGIAGVAASIEAARAGA-DVLVLE 71
>3gyx_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A
{Desulfovibrio gigas}
Length = 662
Score = 31.9 bits (72), Expect = 0.58
Identities = 8/39 (20%), Positives = 16/39 (41%), Gaps = 5/39 (12%)
Query: 115 DMTFDFIIIGAGSAGCVLANRLSEIKKW-----KVLLLE 148
+ + D +++G G C A K+LL++
Sbjct: 20 EHSVDLLMVGGGMGNCGAAFEAVRWADKYAPEAKILLVD 58
>2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis,
biosynthetic protein, flavoprotein; HET: TRP; 2.08A
{Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A*
2oal_A* 2oam_A
Length = 550
Score = 32.0 bits (71), Expect = 0.59
Identities = 24/183 (13%), Positives = 45/183 (24%), Gaps = 21/183 (11%)
Query: 104 HKNNNREEQDDDMT---FDFIIIGAGSAGCVLANRLSEI--KKWKVLLLE---AGIEEPF 155
H ++ + M+ +I+G G+AG + A+ L + + LL+
Sbjct: 9 HHSSGLVPRGSHMSGKIDKILIVGGGTAGWMAASYLGKALQGTADITLLQAPDIPTLGVG 68
Query: 156 FADVPGLAPLISRS-NIDWNYMTMPEPHACKARPNGRCYWARGKVMGGSST--------- 205
A +P L I + M E +A W +
Sbjct: 69 EATIPNLQTAFFDFLGIPEDEW-MRECNASYKVAIKFINWRTAGEGTSEARELDGGPDHF 127
Query: 206 --INYMIYARGNAEDYDEWEAMGNEGWGYDEVLEYFKKSEDNEDKEIYHKNPEYHGKGGY 263
++ W G + K D + + Y
Sbjct: 128 YHSFGLLKYHEQIPLSHYWFDRSYRGKTVEPFDYACYKEPVILDANRSPRRLDGSKVTNY 187
Query: 264 QTV 266
Sbjct: 188 AWH 190
>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid,
amadoriase, deglycation, fructosamine oxidase; HET: MSE
FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A*
Length = 438
Score = 31.8 bits (72), Expect = 0.59
Identities = 9/34 (26%), Positives = 16/34 (47%)
Query: 117 TFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAG 150
+ +I+GAG+ G A L+ V +L+
Sbjct: 6 SSSLLIVGAGTWGTSTALHLARRGYTNVTVLDPY 39
>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone
oxidoreductase, Cys356Ala variant, integral membrane
protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus
ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A*
3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A*
3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A*
Length = 437
Score = 31.3 bits (71), Expect = 0.83
Identities = 15/72 (20%), Positives = 26/72 (36%), Gaps = 22/72 (30%)
Query: 121 IIIGAGSAGCVLANRLSEI--KKWKVLLLE---------------AGIEEPFFADV--PG 161
+I+GAG+ G A + E +V L+ G +E D+ P
Sbjct: 8 VILGAGTGGMPAAYEMKEALGSGHEVTLISANDYFQFVPSNPWVGVGWKER--DDIAFP- 64
Query: 162 LAPLISRSNIDW 173
+ + R I +
Sbjct: 65 IRHYVERKGIHF 76
>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc
genomics, joint center for structural genomics, JCSG;
HET: FAD UNL; 2.40A {Staphylococcus aureus}
Length = 369
Score = 31.3 bits (71), Expect = 0.92
Identities = 24/105 (22%), Positives = 40/105 (38%), Gaps = 9/105 (8%)
Query: 118 FDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIEEP--FFADVPGLAPLISRSNIDWNY 175
IIGAG+AG +A L + V++LE G F P I+ + N
Sbjct: 5 HKVAIIGAGAAGIGMAITLKDFGITDVIILEKG--TVGHSFKHWPKSTRTIT-PSFTSNG 61
Query: 176 MTMPEPHACKARPNGRCYWARGKVMGGSSTINYMIYARGNAEDYD 220
MP+ +A + + + G + Y+ + A Y+
Sbjct: 62 FGMPDMNAISMDTSPAFTFNEEH-ISGETYAEYL---QVVANHYE 102
>1jnr_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A
{Archaeoglobus fulgidus dsm 4304} SCOP: a.7.3.1 c.3.1.4
d.168.1.1 PDB: 1jnz_A* 2fjb_A* 2fja_A* 2fjd_A* 2fje_A*
Length = 643
Score = 31.3 bits (71), Expect = 1.0
Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
Query: 116 MTFDFIIIGAGSAGC---VLANRLSEIKKWKVLLLE 148
+ D +IIG G +GC A +++ KV L+E
Sbjct: 21 VETDILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVE 56
>2weu_A Tryptophan 5-halogenase; regioselectivity, antifungal protei; HET:
TRP; 1.70A {Streptomyces rugosporus} PDB: 2wet_A*
2wes_A*
Length = 511
Score = 31.2 bits (69), Expect = 1.0
Identities = 19/152 (12%), Positives = 41/152 (26%), Gaps = 14/152 (9%)
Query: 116 MTFDFIIIGAGSAGCVLANRLSEI--KKWKVLLLE---AGIEEPFFADVPGLAPLISRSN 170
M +I+G G+AG + A+ L + V L+E A +
Sbjct: 1 MIRSVVIVGGGTAGWMTASYLKAAFDDRIDVTLVESGNVRRIGVGEATFSTVRHFFDYLG 60
Query: 171 IDWNYMTMPEPHACKARPNGRCYWARGKVMGGSSTINYMIYARGNAEDYDE---WEAMGN 227
+D +P W+ + + ++ W A+G+
Sbjct: 61 LDEREW-LPRCAGGYKLGIRFENWSE-----PGEYFYHPFERLRVVDGFNMAEWWLAVGD 114
Query: 228 EGWGYDEVLEYFKKSEDNEDKEIYHKNPEYHG 259
+ E + + + +
Sbjct: 115 RRTSFSEACYLTHRLCEAKRAPRMLDGSLFAS 146
>2e5v_A L-aspartate oxidase; archaea, oxidoreductase; HET: FAD; 2.09A
{Sulfolobus tokodaii}
Length = 472
Score = 31.0 bits (71), Expect = 1.3
Identities = 12/33 (36%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
Query: 121 IIIGAGSAGCVLANRLSEIKKWKVLLLEAGIEE 153
IIG+G AG L K KV L+ I+
Sbjct: 3 YIIGSGIAGLSAGVALRRAGK-KVTLISKRIDG 34
>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural
genomi research consortium, nysgrc; HET: FDA; 2.51A
{Sinorhizobium meliloti}
Length = 417
Score = 30.5 bits (70), Expect = 1.3
Identities = 11/34 (32%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 117 TFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAG 150
D +IIGAG+AG + A + + +VL+++
Sbjct: 27 KQDVVIIGAGAAGMMCAIEAGKRGR-RVLVIDHA 59
>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor;
HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP:
c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A*
3q6j_A*
Length = 523
Score = 30.7 bits (70), Expect = 1.3
Identities = 10/40 (25%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 109 REEQDDDMTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLE 148
+++D +D I IG G+AG + L + + L+++
Sbjct: 35 NVDENDPREYDAIFIGGGAAGRFGSAYLRAMGG-RQLIVD 73
>3da1_A Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9KDW6 X-RAY,
structural genomics, PSI-2, protein structure
initiative; HET: FAD; 2.70A {Bacillus halodurans}
Length = 561
Score = 30.7 bits (70), Expect = 1.5
Identities = 11/50 (22%), Positives = 19/50 (38%), Gaps = 12/50 (24%)
Query: 108 NREEQDDDM---TFDFIIIGAGSAGCVLA----NRLSEIKKWKVLLLEAG 150
R++ +M D ++IG G G +A R + L+E
Sbjct: 6 KRDKCIGEMSEKQLDLLVIGGGITGAGIALDAQVR-----GIQTGLVEMN 50
>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction
mechanism, sustrat binding, oxidoreductase; HET: NAG FUC
PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2
d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A*
1tdo_A* 3kve_A* 4e0v_A*
Length = 498
Score = 30.6 bits (69), Expect = 1.5
Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 119 DFIIIGAGSAGCVLANRLSEIKKWKVLLLEA 149
+I+GAG AG A L+ +V +LEA
Sbjct: 35 HVVIVGAGMAGLSAAYVLAG-AGHQVTVLEA 64
>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB;
TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus
rimd 2210633}
Length = 183
Score = 29.7 bits (67), Expect = 1.5
Identities = 8/41 (19%), Positives = 15/41 (36%)
Query: 109 REEQDDDMTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEA 149
R++ + +I+G G G + L L +E
Sbjct: 31 RDQLINPGHAQVLILGMGRIGTGAYDELRARYGKISLGIEI 71
>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific
opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter
SP} SCOP: a.100.1.5 c.2.1.6
Length = 359
Score = 30.4 bits (68), Expect = 1.6
Identities = 5/17 (29%), Positives = 9/17 (52%)
Query: 122 IIGAGSAGCVLANRLSE 138
++G G+ G A L+
Sbjct: 9 VLGLGNGGHAFAAYLAL 25
>3nkl_A UDP-D-quinovosamine 4-dehydrogenase; alpha-beta fold, structural
genomics, PSI-2, protein structu initiative; HET: MSE
GOL; 1.90A {Vibrio fischeri}
Length = 141
Score = 29.4 bits (67), Expect = 1.7
Identities = 12/24 (50%), Positives = 16/24 (66%)
Query: 121 IIIGAGSAGCVLANRLSEIKKWKV 144
+I GAGSAG LAN L + K++
Sbjct: 8 LIYGAGSAGLQLANMLRQGKEFHP 31
>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural
genomics, PSI-2, protein STRU initiative; HET: AMP;
2.10A {Pyrococcus furiosus}
Length = 421
Score = 30.4 bits (69), Expect = 1.7
Identities = 8/42 (19%), Positives = 20/42 (47%), Gaps = 10/42 (23%)
Query: 121 IIIGAGSAGCVLANRLSEIKK-WKVLLLEAGIEEPFFADVPG 161
+++GAG G + L+ + ++++LE + + G
Sbjct: 4 VVVGAGLGGLLAGAFLA--RNGHEIIVLEK-------SAMIG 36
>2rgh_A Alpha-glycerophosphate oxidase; flavoprotein oxidase,
oxidoreductase; HET: FAD; 2.30A {Streptococcus SP} PDB:
2rgo_A*
Length = 571
Score = 30.4 bits (69), Expect = 1.7
Identities = 14/64 (21%), Positives = 20/64 (31%), Gaps = 12/64 (18%)
Query: 94 EQSNEGYDKDHKNNNREEQDDDM---TFDFIIIGAGSAGCVLA----NRLSEIKKWKVLL 146
+ G N R++ M D +IIG G G +A K L
Sbjct: 6 HHHHHGSACMFSNKTRQDSIQKMQQEELDLLIIGGGITGAGVAVQAAAS-----GIKTGL 60
Query: 147 LEAG 150
+E
Sbjct: 61 IEMQ 64
>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H,
structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia
psychrerythraea}
Length = 492
Score = 30.2 bits (69), Expect = 1.8
Identities = 12/36 (33%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Query: 115 DMTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAG 150
+ D IIG G+AG + KV+L+E G
Sbjct: 6 VINVDVAIIGTGTAGMGAYRAAKKHTD-KVVLIEGG 40
>3dtt_A NADP oxidoreductase; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-2; HET: NAP; 1.70A {Arthrobacter SP}
Length = 245
Score = 29.7 bits (66), Expect = 2.5
Identities = 12/42 (28%), Positives = 21/42 (50%), Gaps = 5/42 (11%)
Query: 99 GYDKDHKNNNREEQDDD-MTFDFI-IIGAGSAGCVLANRLSE 138
G DK H +++ E M I ++G G+ G +A L++
Sbjct: 2 GSDKIHHHHHHENLYFQGMK---IAVLGTGTVGRTMAGALAD 40
>1pn0_A Phenol 2-monooxygenase; two dimers, TLS refinement, oxidoreductase;
HET: FAD; 1.70A {Trichosporon cutaneum} SCOP: c.3.1.2
c.47.1.10 d.16.1.2 PDB: 1foh_A*
Length = 665
Score = 30.0 bits (67), Expect = 2.5
Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 4/36 (11%)
Query: 117 TFDFIIIGAGSAGCVLANRLSEIKKW----KVLLLE 148
D +I+GAG AG + A LSE + KV +++
Sbjct: 8 YCDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIID 43
>2pyx_A Tryptophan halogenase; structural genomics, JOI for structural
genomics, JCSG, protein structure initiative
biosynthetic protein; HET: MSE TLA PG4; 1.50A
{Shewanella frigidimarina}
Length = 526
Score = 30.1 bits (66), Expect = 2.6
Identities = 23/160 (14%), Positives = 47/160 (29%), Gaps = 17/160 (10%)
Query: 121 IIIGAGSAGCVLANRLS-----------EIKKWKVLLLE---AGIEEPFFADVPGLAPLI 166
II+G G+AG + A L+ K + L+E P + +
Sbjct: 11 IIVGGGTAGWITAGLLAAEHNVDKGVLAHSPKLNITLIESPDVATIGVGEGTWPSMRSTL 70
Query: 167 SRSNIDWNYMTMPEPHACKARPNGRCYWARGKVMGGSSTINYMIYARGNAEDYDEWEAMG 226
S+ ID N + + A + + W + + + + ++ D
Sbjct: 71 SKIGIDENDF-IRQCDASFKQGSRFINWCKDPQSNVADSYLHPFSLPHGHQELDLCPYWL 129
Query: 227 NEG--WGYDEVLEYFKKSEDNEDKEIYHKNPEYHGKGGYQ 264
+ E + + +YH + Y
Sbjct: 130 PHAEQVSFAEAVCSQQVLTQLGLAPKSIVTAQYHFQNNYG 169
>2cul_A Glucose-inhibited division protein A-related PROT probable
oxidoreductase; rossmann fold, protein-FAD complex; HET:
FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7
Length = 232
Score = 29.5 bits (67), Expect = 2.7
Identities = 5/14 (35%), Positives = 9/14 (64%)
Query: 117 TFDFIIIGAGSAGC 130
+ +I+GAG +G
Sbjct: 3 AYQVLIVGAGFSGA 16
>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein;
HET: FAD; 2.35A {Thermoplasma acidophilum}
Length = 319
Score = 29.4 bits (67), Expect = 2.9
Identities = 13/45 (28%), Positives = 23/45 (51%), Gaps = 7/45 (15%)
Query: 110 EEQDDDMTFDFIIIGAGSAG---CVLANRLSEIKKWKVLLLEAGI 151
++ + FD +I+GAG+AG V A R + V +L+ +
Sbjct: 9 SSEEKERDFDVVIVGAGAAGFSAAVYAAR----SGFSVAILDKAV 49
>3ic5_A Putative saccharopine dehydrogenase; structural genomics,
APC63807.2, N-terminal domain, saccharo dehydrogenase,
PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}
Length = 118
Score = 28.2 bits (63), Expect = 3.1
Identities = 8/34 (23%), Positives = 17/34 (50%)
Query: 114 DDMTFDFIIIGAGSAGCVLANRLSEIKKWKVLLL 147
+ M ++ ++GAG G ++A L + V +
Sbjct: 2 NAMRWNICVVGAGKIGQMIAALLKTSSNYSVTVA 35
>2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase;
HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB:
2r0g_A* 2r0p_A* 3ept_A*
Length = 549
Score = 29.7 bits (67), Expect = 3.4
Identities = 8/25 (32%), Positives = 13/25 (52%)
Query: 113 DDDMTFDFIIIGAGSAGCVLANRLS 137
+ + D +I+G G G LA L+
Sbjct: 22 NAPIETDVLILGGGPVGMALALDLA 46
>2e2d_C TIMP-2, metalloproteinase inhibitor 2; matrix
metalloproteinase/MMP, collagenase, tissue inhibitor of
metalloproteinases/TIMP, complex, flexibility; 2.00A
{Bos taurus} SCOP: b.40.3.1 PDB: 1bqq_T 1buv_T 1br9_A
1gxd_C 2tmp_A
Length = 180
Score = 28.7 bits (63), Expect = 3.4
Identities = 8/15 (53%), Positives = 9/15 (60%)
Query: 183 ACKARPNGRCYWARG 197
AC R +G C W RG
Sbjct: 166 ACIKRSDGSCAWYRG 180
>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family
ketopantoate reductase, struct genomics, joint center
for structural genomics; HET: NDP BCN; 2.15A {Ralstonia
eutropha}
Length = 318
Score = 29.1 bits (66), Expect = 3.5
Identities = 13/41 (31%), Positives = 19/41 (46%), Gaps = 3/41 (7%)
Query: 99 GYDKDHKNNNREE-QDDDMTFDFIIIGAGSAGCVLANRLSE 138
G DK H +++ E M I+GAG+ GC L+
Sbjct: 2 GSDKIHHHHHHENLYFQGM--KVAIMGAGAVGCYYGGMLAR 40
>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase,
NADP, pantothenate BIOS PSI-2, protein structure
initiative; 1.90A {Methylococcus capsulatus}
Length = 320
Score = 29.1 bits (66), Expect = 3.8
Identities = 6/23 (26%), Positives = 13/23 (56%)
Query: 116 MTFDFIIIGAGSAGCVLANRLSE 138
M+ + ++IG G+ G L++
Sbjct: 1 MSLNILVIGTGAIGSFYGALLAK 23
>4ei7_A Plasmid replication protein REPX; GTP hydrolase, plasmid
segregation; HET: GDP; 1.90A {Bacillus cereus} PDB:
4ei8_A 4ei9_A*
Length = 389
Score = 28.9 bits (64), Expect = 4.4
Identities = 8/35 (22%), Positives = 16/35 (45%)
Query: 106 NNNREEQDDDMTFDFIIIGAGSAGCVLANRLSEIK 140
N + E +++ F +G G GC +A + +
Sbjct: 4 NFSEIESQGNISLKFGFLGLGMGGCAIAAECANKE 38
>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD;
2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5
d.87.1.1
Length = 499
Score = 29.1 bits (66), Expect = 4.4
Identities = 8/35 (22%), Positives = 16/35 (45%), Gaps = 2/35 (5%)
Query: 116 MTFDFIIIGAGSAGCVLANRLSE--IKKWKVLLLE 148
M +I+G G AG A + + +V +++
Sbjct: 1 MVTRIVILGGGPAGYEAALVAATSHPETTQVTVID 35
>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional
protein MNMC; rossmann fold, oxidase, methyl
transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli}
PDB: 3awi_A*
Length = 676
Score = 29.1 bits (64), Expect = 4.7
Identities = 22/123 (17%), Positives = 38/123 (30%), Gaps = 6/123 (4%)
Query: 55 SHPAGSLEVNSYRSAEDVSHILGDTFLKAYDNTGHKKRPEQSNEGYDKDHKNNNREEQDD 114
+ P G+ + ++ SA V L D G ++ E ++ +
Sbjct: 209 ARPGGT--LATFTSAGFVRRGLQDAGFTMQKRKGFGRKREMLCGVMEQTLPLPCSAPWFN 266
Query: 115 DMTF---DFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIEEPFFADVPGLAPLISRSNI 171
+ IIG G A +L+ L + W+V L A A L +
Sbjct: 267 RTGSSKREAAIIGGGIASALLSLALLR-RGWQVTLYCADEAPALGASGNRQGALYPLLSK 325
Query: 172 DWN 174
Sbjct: 326 HDE 328
>1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate
binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A
{Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2
d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A*
Length = 830
Score = 29.3 bits (66), Expect = 4.8
Identities = 11/29 (37%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
Query: 121 IIIGAGSAGCVLANRLSEIKKWK-VLLLE 148
+IIGAG G LA+ L + W + +L+
Sbjct: 8 VIIGAGIVGTNLADELVT-RGWNNITVLD 35
>3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas,
oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten
maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B*
Length = 404
Score = 29.0 bits (64), Expect = 5.0
Identities = 5/26 (19%), Positives = 11/26 (42%)
Query: 122 IIGAGSAGCVLANRLSEIKKWKVLLL 147
+ G G+ L+ + +V +L
Sbjct: 7 VCGGGNGAHTLSGLAASRDGVEVRVL 32
>2i76_A Hypothetical protein; NADP, dehydrogenase, TM1727, structural
genomics, PSI-2, protein structure initiative; HET: NDP;
3.00A {Thermotoga maritima} SCOP: a.100.1.10 c.2.1.6
Length = 276
Score = 28.6 bits (63), Expect = 5.1
Identities = 4/22 (18%), Positives = 7/22 (31%)
Query: 116 MTFDFIIIGAGSAGCVLANRLS 137
M+ +G G+ L
Sbjct: 1 MSLVLNFVGTGTLTRFFLECLK 22
>2h88_A Succinate dehydrogenase flavoprotein subunit; complex II, membrane
protein, heme protein, iron sulfur PROT cytochrome B,
oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus
gallus} PDB: 1yq4_A* 1yq3_A* 2fbw_A* 2h89_A* 2wqy_A*
1zoy_A* 1zp0_A* 3abv_A* 3ae1_A* 3ae2_A* 3ae3_A* 3ae4_A*
3ae5_A* 3ae6_A* 3ae7_A* 3ae8_A* 3ae9_A* 3aea_A* 3aeb_A*
3aec_A* ...
Length = 621
Score = 28.8 bits (65), Expect = 5.1
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 115 DMTFDFIIIGAGSAGCVLANRLSE 138
D FD +++GAG AG A LSE
Sbjct: 16 DHEFDAVVVGAGGAGLRAAFGLSE 39
>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB:
3l4b_A*
Length = 155
Score = 28.0 bits (63), Expect = 5.2
Identities = 8/36 (22%), Positives = 16/36 (44%), Gaps = 2/36 (5%)
Query: 103 DHKNNNREEQDDDMTFDFIIIGAGSAGCVLANRLSE 138
H +++ ++ +I G G G ++AN S
Sbjct: 7 HHHHHHMSKKQKSKYI--VIFGCGRLGSLIANLASS 40
>2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate
dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A
{Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A*
Length = 501
Score = 28.7 bits (65), Expect = 5.3
Identities = 15/38 (39%), Positives = 17/38 (44%), Gaps = 9/38 (23%)
Query: 117 TFDFIIIGAGS--AGCVL--ANRLSEIKKWKVLLLEAG 150
T D I+IG G AG A R VL+LEA
Sbjct: 3 TKDLIVIGGGINGAGIAADAAGR-----GLSVLMLEAQ 35
>3cp8_A TRNA uridine 5-carboxymethylaminomethyl modification enzyme GIDA;
rossmann fold, FAD-binding domain, dinucleotide-binding
motif; HET: FAD; 3.20A {Chlorobium tepidum}
Length = 641
Score = 29.0 bits (66), Expect = 5.3
Identities = 8/14 (57%), Positives = 11/14 (78%)
Query: 117 TFDFIIIGAGSAGC 130
+D I++GAG AGC
Sbjct: 21 MYDVIVVGAGHAGC 34
>3m89_A FTSZ/tubulin-related protein; partition, TUBZ, GTP-binding,
nucleotide-BIND structural protein; HET: GSP; 2.00A
{Bacillus thuringiensis} PDB: 3m8k_A 2xka_A* 2xkb_A*
Length = 427
Score = 28.7 bits (63), Expect = 5.4
Identities = 10/51 (19%), Positives = 22/51 (43%), Gaps = 2/51 (3%)
Query: 93 PEQSNEGYDKDHKNN--NREEQDDDMTFDFIIIGAGSAGCVLANRLSEIKK 141
P S+ + + + + +D++ + +IGAG G A+ + K
Sbjct: 16 PRGSHMLLNSNELEHIHSTNHSVNDISIRWGVIGAGQKGNKEADLFAGYKF 66
>4fk1_A Putative thioredoxin reductase; structural genomics, niaid,
national institute of allergy AN infectious diseases;
HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C*
Length = 304
Score = 28.7 bits (65), Expect = 5.7
Identities = 10/39 (25%), Positives = 16/39 (41%), Gaps = 9/39 (23%)
Query: 117 TFDFIIIGAG----SAGCVLANRLSEIKKWKVLLLEAGI 151
D +IGAG +A VL R + ++ L +
Sbjct: 6 YIDCAVIGAGPAGLNASLVLG-R----ARKQIALFDNNT 39
>2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83,
structural genomics, PSI-2; HET: MSE; 2.15A
{Porphyromonas gingivalis}
Length = 317
Score = 28.4 bits (64), Expect = 5.9
Identities = 6/42 (14%), Positives = 10/42 (23%), Gaps = 10/42 (23%)
Query: 122 IIGAGSAGCVLANRLSEIKKWKVLLLEAGIEEPFFADVPGLA 163
+ G G G L+ +V +A
Sbjct: 13 VFGLGGVGGYYGAMLA----------LRAAATDGLLEVSWIA 44
>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE
protein structure initiative; 2.50A {Geobacter
metallireducens}
Length = 312
Score = 28.3 bits (64), Expect = 5.9
Identities = 7/23 (30%), Positives = 10/23 (43%)
Query: 116 MTFDFIIIGAGSAGCVLANRLSE 138
M+ I+GAG+ G L
Sbjct: 1 MSLRIAIVGAGALGLYYGALLQR 23
>3ces_A MNMG, tRNA uridine 5-carboxymethylaminomethyl modificat GIDA, GIDA;
tRNA modification, FAD binding domain, structural
genomics; 2.41A {Escherichia coli} PDB: 3cp2_A 3g05_A
Length = 651
Score = 28.6 bits (65), Expect = 6.0
Identities = 9/14 (64%), Positives = 9/14 (64%)
Query: 117 TFDFIIIGAGSAGC 130
FD IIIG G AG
Sbjct: 28 PFDVIIIGGGHAGT 41
>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate
hydrogen bond, nucleotide binding fold, thior reductase,
thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium}
SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A
1zyp_A
Length = 521
Score = 28.8 bits (65), Expect = 6.3
Identities = 12/54 (22%), Positives = 21/54 (38%), Gaps = 7/54 (12%)
Query: 101 DKDHKNNNREEQDDDMTFDFIIIGAGSAGC---VLANRLSEIKKWKVLLLEAGI 151
D + E + +D +I+G+G AG V + R K + L+
Sbjct: 196 DTGAEKRAAEALNKRDAYDVLIVGSGPAGAAAAVYSAR----KGIRTGLMGERF 245
>3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein,
oxidoreductase; HET: FAD; 2.89A {Streptomyces
argillaceus}
Length = 570
Score = 28.5 bits (64), Expect = 6.6
Identities = 15/63 (23%), Positives = 27/63 (42%), Gaps = 2/63 (3%)
Query: 74 HILGDTFLKAYDNTGHKKRPEQSNEGYDKDHKNNNREEQDDDMTFDFIIIGAGSAGCVLA 133
H G + +N G + + + N+N + D +T D +++G G G +LA
Sbjct: 8 HHHGMASMTGGNNMGRDLYDDDDKDPGRRMMHNSNAD--DAALTTDVVVVGGGPVGLMLA 65
Query: 134 NRL 136
L
Sbjct: 66 GEL 68
>2zxi_A TRNA uridine 5-carboxymethylaminomethyl modificat MNMG;
modification, 5-carboxymethylaminomethyl uridine, WOBB
uridine, FAD; HET: FAD; 2.30A {Aquifex aeolicus} PDB:
2zxh_A* 2e57_A*
Length = 637
Score = 28.6 bits (65), Expect = 6.7
Identities = 7/14 (50%), Positives = 9/14 (64%)
Query: 117 TFDFIIIGAGSAGC 130
FD ++IG G AG
Sbjct: 27 EFDVVVIGGGHAGI 40
>3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266,
NESG, PAR240, structural genomics, PSI-2; HET: FAD;
1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2
d.16.1.2 PDB: 2rgj_A*
Length = 410
Score = 28.4 bits (64), Expect = 6.8
Identities = 13/36 (36%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
Query: 116 MTFDF--IIIGAGSAGCVLANRLSEIKKWKVLLLEA 149
M+ +I GAG G A L + KV LLE+
Sbjct: 1 MSEPIDILIAGAGIGGLSCALALHQAGIGKVTLLES 36
>3iz5_e 60S ribosomal protein L7 (L30P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_e
Length = 244
Score = 28.3 bits (62), Expect = 6.8
Identities = 6/58 (10%), Positives = 20/58 (34%), Gaps = 1/58 (1%)
Query: 324 IRKKRKNLTILTEAHVTRIICDKTPNKHK-KLVAKSVEFFYKKKLRRARAKKEVISSA 380
+ KR+ + ++ +K K++ E + + + + ++ A
Sbjct: 14 VILKRRREEVWAAEKKQKVAAEKIKAAENTKVIYARAEQYAGEYEAQDKELVQLKREA 71
>2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase,
complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas
testosteroni} PDB: 2dki_A*
Length = 639
Score = 28.7 bits (64), Expect = 6.8
Identities = 10/32 (31%), Positives = 17/32 (53%)
Query: 117 TFDFIIIGAGSAGCVLANRLSEIKKWKVLLLE 148
D +I+G G AG LA +L+ + ++E
Sbjct: 32 QVDVLIVGCGPAGLTLAAQLAAFPDIRTCIVE 63
>3izc_e 60S ribosomal protein RPL7 (L30P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_e
3o58_G 3o5h_G 3u5e_F 3u5i_F
Length = 244
Score = 28.2 bits (62), Expect = 7.0
Identities = 9/54 (16%), Positives = 16/54 (29%), Gaps = 1/54 (1%)
Query: 324 IRKKRKNLTILTEAHVTRIICDKTPNK-HKKLVAKSVEFFYKKKLRRARAKKEV 376
KK K E K NK + ++ + + K+ R +
Sbjct: 12 QLKKSKAQQKTAEQVAAERAARKAANKEKRAIILERNAAYQKEYETAERNIIQA 65
>1nst_A NST1, heparan sulfate N-deacetylase/N-sulfotransferase; PAP,
haparin sulfate, haparin sulfate biosynthesis,
glycoprotein; HET: A3P; 2.30A {Homo sapiens} SCOP:
c.37.1.5
Length = 325
Score = 27.9 bits (61), Expect = 8.5
Identities = 32/208 (15%), Positives = 53/208 (25%), Gaps = 19/208 (9%)
Query: 82 KAYDNTGHKKRPEQSNEGYDKDHKNNNREEQDDDMTFDFIIIGAGSAGC-VLANRLSEIK 140
K + +K P + DK HK+ +E+ D +IIG G L L
Sbjct: 12 KYFQIFSEEKDPLWQDPCEDKRHKDIWSKEKTCDRFPKLLIIGPQKTGTTALYLFLGMHP 71
Query: 141 KWKVLLLEAGIEEPFFADVPGLAPLISRSNIDWNYMTMPEPHACKARPNGRC---YWARG 197
L F ++ IDW P P + Y+
Sbjct: 72 ----DLSSNYPSSETFEEIQFFNGHNYHKGIDWYMEFFPIPSNTTSDFYFEKSANYFDSE 127
Query: 198 KVMGGSSTIN---YMIYARGNAED-----YDEWEAMGNEGWGYDEVLEYFKKSEDNEDKE 249
++ + ++ N D Y A + + + +
Sbjct: 128 VAPRRAAALLPKAKVLTILINPADRAYSWYQHQRAHDDP-VALKYTFHEVITAGSDASSK 186
Query: 250 IYHKNPEYHGKGGY--QTVEWLPYADKN 275
+ G Y WL N
Sbjct: 187 LRALQNRCLVPGWYATHIERWLSAYHAN 214
>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD
binding protein, NADH binding protein, aromatic hydrocar
catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida}
Length = 410
Score = 27.9 bits (63), Expect = 8.6
Identities = 8/21 (38%), Positives = 8/21 (38%)
Query: 116 MTFDFIIIGAGSAGCVLANRL 136
M IIG G G A L
Sbjct: 1 MATHVAIIGNGVGGFTTAQAL 21
>3g5s_A Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase
TRMFO; tRNA methyltransferase FAD folate, FAD,
flavoprotein; HET: MSE FAD GSH; 1.05A {Thermus
thermophilus} PDB: 3g5q_A* 3g5r_A*
Length = 443
Score = 28.2 bits (63), Expect = 8.6
Identities = 9/34 (26%), Positives = 11/34 (32%), Gaps = 9/34 (26%)
Query: 119 DFIIIGAGSAGC----VLANRLSEIKKWKVLLLE 148
++GAG AG L V L E
Sbjct: 3 RVNVVGAGLAGSEAAWTLLRL-----GVPVRLFE 31
>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A,
flavin adenine dinucleotide, selenomethionine, F
flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis
str} PDB: 3cgc_A* 3cgd_A* 3cge_A*
Length = 480
Score = 28.3 bits (64), Expect = 9.2
Identities = 11/44 (25%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 108 NREEQDDDMTFDFIIIGAGSAGCVLANRLSEIKK-WKVLLLEAG 150
+ +++D + +++IIG +AG A ++ + V+ LE G
Sbjct: 27 DDDDKDRWGSMNYVIIGGDAAGMSAAMQIVRNDENANVVTLEKG 70
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.135 0.407
Gapped
Lambda K H
0.267 0.0809 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 8,760,044
Number of extensions: 532344
Number of successful extensions: 1473
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1381
Number of HSP's successfully gapped: 165
Length of query: 567
Length of database: 6,701,793
Length adjustment: 99
Effective length of query: 468
Effective length of database: 3,937,614
Effective search space: 1842803352
Effective search space used: 1842803352
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (26.7 bits)