BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy10421
         (120 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3FIM|B Chain B, Crystal Structure Of Aryl-Alcohol-Oxidase From Pleurotus
           Eryingii
          Length = 566

 Score = 73.6 bits (179), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 31/64 (48%), Positives = 41/64 (64%)

Query: 46  HQCGTCKMGPATDRTAVVDPRLRVYGIQGLRVIDASIMPVLPGGHTVAPTYMIGEKGADM 105
           H  GT  M P      VVDP L+V G+ GLR++D SI+P  P  HT  P Y++G++GAD+
Sbjct: 502 HPVGTASMSPRGASWGVVDPDLKVKGVDGLRIVDGSILPFAPNAHTQGPIYLVGKQGADL 561

Query: 106 IKED 109
           IK D
Sbjct: 562 IKAD 565


>pdb|3Q9T|A Chain A, Crystal Structure Analysis Of Formate Oxidase
 pdb|3Q9T|B Chain B, Crystal Structure Analysis Of Formate Oxidase
 pdb|3Q9T|C Chain C, Crystal Structure Analysis Of Formate Oxidase
          Length = 577

 Score = 62.8 bits (151), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 33/86 (38%), Positives = 48/86 (55%), Gaps = 1/86 (1%)

Query: 24  HLPFGSDEYWVCCVKHLTMQTHHQCGTCKMGPATDRTAVVDPRLRVYGIQGLRVIDASIM 83
            +P  SD+     V        H  GT ++    D+  VVDP+L+V+GI+ LRV DAS++
Sbjct: 488 EMPLDSDKEMHRAVLDRCQTAFHPTGTARLSKNIDQ-GVVDPKLKVHGIKKLRVADASVI 546

Query: 84  PVLPGGHTVAPTYMIGEKGADMIKED 109
           P++P        Y +GEK ADMIK +
Sbjct: 547 PIIPDCRIQNSVYAVGEKCADMIKAE 572


>pdb|1CF3|A Chain A, Glucose Oxidase From Apergillus Niger
 pdb|1GAL|A Chain A, Crystal Structure Of Glucose Oxidase From Aspergillus
           Niger: Refined At 2.3 Angstroms Resolution
 pdb|3QVP|A Chain A, Crystal Structure Of Glucose Oxidase For Space Group C2221
           At 1.2 A Resolution
 pdb|3QVR|A Chain A, Crystal Structure Of Glucose Oxidase For Space Group P3121
           At 1.3 A Resolution
          Length = 583

 Score = 58.2 bits (139), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 36/93 (38%), Positives = 48/93 (51%), Gaps = 3/93 (3%)

Query: 19  IPGCKHLPFGSD-EYWVCCVKHLTMQTHHQCGTCKMGPATDRTAVVDPRLRVYGIQGLRV 77
           IPG  +L + +D   W   + +     +H  GTC M P  +   VVD   RVYG+QGLRV
Sbjct: 489 IPG-DNLAYDADLSAWTEYIPYHFRPNYHGVGTCSMMP-KEMGGVVDNAARVYGVQGLRV 546

Query: 78  IDASIMPVLPGGHTVAPTYMIGEKGADMIKEDW 110
           ID SI P     H +   Y +  K +D I ED+
Sbjct: 547 IDGSIPPTQMSSHVMTVFYAMALKISDAILEDY 579


>pdb|3NNE|A Chain A, Crystal Structure Of Choline Oxidase S101a Mutant
 pdb|3NNE|B Chain B, Crystal Structure Of Choline Oxidase S101a Mutant
 pdb|3NNE|C Chain C, Crystal Structure Of Choline Oxidase S101a Mutant
 pdb|3NNE|D Chain D, Crystal Structure Of Choline Oxidase S101a Mutant
 pdb|3NNE|E Chain E, Crystal Structure Of Choline Oxidase S101a Mutant
 pdb|3NNE|F Chain F, Crystal Structure Of Choline Oxidase S101a Mutant
 pdb|3NNE|G Chain G, Crystal Structure Of Choline Oxidase S101a Mutant
 pdb|3NNE|H Chain H, Crystal Structure Of Choline Oxidase S101a Mutant
          Length = 546

 Score = 56.2 bits (134), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 28/63 (44%), Positives = 38/63 (60%)

Query: 45  HHQCGTCKMGPATDRTAVVDPRLRVYGIQGLRVIDASIMPVLPGGHTVAPTYMIGEKGAD 104
           +H  GT +MG   D  + +DP LRV G+ GLRV DAS+MP     +      MIGE+ AD
Sbjct: 465 YHPVGTVRMGAVEDEMSPLDPELRVKGVTGLRVADASVMPEHVTVNPNITVMMIGERCAD 524

Query: 105 MIK 107
           +I+
Sbjct: 525 LIR 527


>pdb|3LJP|A Chain A, Crystal Structure Of Choline Oxidase V464a Mutant
 pdb|3LJP|B Chain B, Crystal Structure Of Choline Oxidase V464a Mutant
          Length = 546

 Score = 56.2 bits (134), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 28/63 (44%), Positives = 38/63 (60%)

Query: 45  HHQCGTCKMGPATDRTAVVDPRLRVYGIQGLRVIDASIMPVLPGGHTVAPTYMIGEKGAD 104
           +H  GT +MG   D  + +DP LRV G+ GLRV DAS+MP     +      MIGE+ AD
Sbjct: 465 YHPVGTVRMGAVEDEMSPLDPELRVKGVTGLRVADASVMPEHVTVNPNITVMMIGERCAD 524

Query: 105 MIK 107
           +I+
Sbjct: 525 LIR 527


>pdb|2JBV|A Chain A, Crystal Structure Of Choline Oxidase Reveals Insights Into
           The Catalytic Mechanism
 pdb|2JBV|B Chain B, Crystal Structure Of Choline Oxidase Reveals Insights Into
           The Catalytic Mechanism
          Length = 546

 Score = 56.2 bits (134), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 28/63 (44%), Positives = 38/63 (60%)

Query: 45  HHQCGTCKMGPATDRTAVVDPRLRVYGIQGLRVIDASIMPVLPGGHTVAPTYMIGEKGAD 104
           +H  GT +MG   D  + +DP LRV G+ GLRV DAS+MP     +      MIGE+ AD
Sbjct: 465 YHPVGTVRMGAVEDEMSPLDPELRVKGVTGLRVADASVMPEHVTVNPNITVMMIGERCAD 524

Query: 105 MIK 107
           +I+
Sbjct: 525 LIR 527


>pdb|3T37|A Chain A, Crystal Structure Of Pyridoxine 4-Oxidase From Mesorbium
           Loti
          Length = 526

 Score = 51.6 bits (122), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 29/59 (49%), Positives = 33/59 (55%), Gaps = 2/59 (3%)

Query: 45  HHQCGTCKMGPATDRTAVVDPRLRVYGIQGLRVIDASIMPVLPGGHTVAPTYMIGEKGA 103
           HH CGTC+MG   D  AVVD  LR+  +  L V+DASIMP L  G   A    I E  A
Sbjct: 461 HHPCGTCRMG--KDPDAVVDANLRLKALDNLFVVDASIMPNLTAGPIHAAVLAIAETFA 517


>pdb|1GPE|A Chain A, Glucose Oxidase From Penicillium Amagasakiense
 pdb|1GPE|B Chain B, Glucose Oxidase From Penicillium Amagasakiense
          Length = 587

 Score = 47.0 bits (110), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 26/65 (40%), Positives = 34/65 (52%), Gaps = 1/65 (1%)

Query: 46  HQCGTCKMGPATDRTAVVDPRLRVYGIQGLRVIDASIMPVLPGGHTVAPTYMIGEKGADM 105
           H   +C M  + +   VVD   +VYG QGLRVID SI P     H +   Y +  K AD 
Sbjct: 520 HAVSSCSM-MSRELGGVVDATAKVYGTQGLRVIDGSIPPTQVSSHVMTIFYGMALKVADA 578

Query: 106 IKEDW 110
           I +D+
Sbjct: 579 ILDDY 583


>pdb|1NAA|A Chain A, Cellobiose Dehydrogenase Flavoprotein Fragment In Complex
           With Cellobionolactam
 pdb|1NAA|B Chain B, Cellobiose Dehydrogenase Flavoprotein Fragment In Complex
           With Cellobionolactam
          Length = 541

 Score = 40.0 bits (92), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 21/66 (31%), Positives = 37/66 (56%), Gaps = 1/66 (1%)

Query: 41  TMQTHHQCGTCKMGPATDRTAVVDPRLRVYGIQGLRVIDASIMPVLPGGHTVAPTYMIGE 100
           TM ++H   +  +G ++ ++AVVD  ++V+G   L ++DA I+P LP G+         E
Sbjct: 470 TMNSNHWVSSTTIG-SSPQSAVVDSNVKVFGTNNLFIVDAGIIPHLPTGNPQGTLMSAAE 528

Query: 101 KGADMI 106
           + A  I
Sbjct: 529 QAAAKI 534


>pdb|1KDG|A Chain A, Crystal Structure Of The Flavin Domain Of Cellobiose
           Dehydrogenase
 pdb|1KDG|B Chain B, Crystal Structure Of The Flavin Domain Of Cellobiose
           Dehydrogenase
          Length = 546

 Score = 40.0 bits (92), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 21/66 (31%), Positives = 37/66 (56%), Gaps = 1/66 (1%)

Query: 41  TMQTHHQCGTCKMGPATDRTAVVDPRLRVYGIQGLRVIDASIMPVLPGGHTVAPTYMIGE 100
           TM ++H   +  +G ++ ++AVVD  ++V+G   L ++DA I+P LP G+         E
Sbjct: 475 TMNSNHWVSSTTIG-SSPQSAVVDSNVKVFGTNNLFIVDAGIIPHLPTGNPQGTLMSAAE 533

Query: 101 KGADMI 106
           + A  I
Sbjct: 534 QAAAKI 539


>pdb|1JU2|A Chain A, Crystal Structure Of The Hydroxynitrile Lyase From Almond
 pdb|1JU2|B Chain B, Crystal Structure Of The Hydroxynitrile Lyase From Almond
          Length = 536

 Score = 35.4 bits (80), Expect = 0.009,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 24/54 (44%), Gaps = 6/54 (11%)

Query: 46  HQCGTCKMGPATDRTAVVDPRLRVYGIQGLRVIDASIMPVLPGGHTVAPTYMIG 99
           H  G C +G       V+D   RV GI  LRV+D S  P  P  H      M+G
Sbjct: 459 HYHGGCLVG------KVLDGDFRVTGINALRVVDGSTFPYTPASHPQGFYLMLG 506


>pdb|3GDN|A Chain A, Almond Hydroxynitrile Lyase In Complex With Benzaldehyde
 pdb|3GDN|B Chain B, Almond Hydroxynitrile Lyase In Complex With Benzaldehyde
 pdb|3GDP|A Chain A, Hydroxynitrile Lyase From Almond, Monoclinic Crystal Form
 pdb|3GDP|B Chain B, Hydroxynitrile Lyase From Almond, Monoclinic Crystal Form
          Length = 521

 Score = 35.0 bits (79), Expect = 0.010,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 24/54 (44%), Gaps = 6/54 (11%)

Query: 46  HQCGTCKMGPATDRTAVVDPRLRVYGIQGLRVIDASIMPVLPGGHTVAPTYMIG 99
           H  G C +G       V+D   RV GI  LRV+D S  P  P  H      M+G
Sbjct: 459 HYHGGCLVG------KVLDGDFRVTGINALRVVDGSTFPYTPASHPQGFYLMLG 506


>pdb|3RED|A Chain A, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
           Isozyme-1
 pdb|3RED|B Chain B, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
           Isozyme-1
 pdb|3RED|C Chain C, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
           Isozyme-1
 pdb|3RED|D Chain D, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
           Isozyme-1
 pdb|3RED|E Chain E, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
           Isozyme-1
 pdb|3RED|F Chain F, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
           Isozyme-1
 pdb|3RED|G Chain G, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
           Isozyme-1
 pdb|3RED|H Chain H, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
           Isozyme-1
 pdb|3RED|I Chain I, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
           Isozyme-1
 pdb|3RED|J Chain J, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
           Isozyme-1
 pdb|3RED|K Chain K, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
           Isozyme-1
 pdb|3RED|L Chain L, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
           Isozyme-1
          Length = 521

 Score = 35.0 bits (79), Expect = 0.011,   Method: Composition-based stats.
 Identities = 22/64 (34%), Positives = 30/64 (46%), Gaps = 7/64 (10%)

Query: 46  HQCGTCKMGPATDRTAVVDPRLRVYGIQGLRVIDASIMPVLPGGHTVAPTYMIGEK-GAD 104
           H  G C +G       V+D   RV GI  LRV+D S  P  P  H      M+G   G+ 
Sbjct: 460 HYHGGCLVG------EVLDGDFRVTGINALRVVDGSTFPYSPASHPQGFYLMLGRYVGSK 513

Query: 105 MIKE 108
           +++E
Sbjct: 514 ILQE 517


>pdb|1B8S|A Chain A, Cholesterol Oxidase From Streptomyces Glu361gln Mutant
          Length = 504

 Score = 30.0 bits (66), Expect = 0.32,   Method: Composition-based stats.
 Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 7/66 (10%)

Query: 45  HHQCGTCKMGPATDRTAVVDPRLRVYGIQGLRVIDASIMPVLPGGHTVAPTYMIGEKGAD 104
           +H  G C +G ATD         RV G + L V D S++P   G +       + E+  +
Sbjct: 441 YHPLGGCVLGKATDDYG------RVAGYKNLYVTDGSLIPGSVGVNPFVTITALAERNVE 494

Query: 105 -MIKED 109
            +IK+D
Sbjct: 495 RIIKQD 500


>pdb|1B4V|A Chain A, Cholesterol Oxidase From Streptomyces
 pdb|1MXT|A Chain A, Atomic Resolution Structure Of Cholesterol Oxidase
           (Streptomyces Sp. Sa-Coo)
 pdb|1N1P|A Chain A, Atomic Resolution Structure Of Cholesterol Oxidase @ Ph
           7.4 (Streptomyces Sp. Sa-Coo)
 pdb|1N4U|A Chain A, Cholesterol Oxidase From Streptomyces @ Ph 4.5
           (Streptomyces Sp. Sa- Coo)
 pdb|1N4V|A Chain A, Atomic Resolution Structure Of Cholesterol Oxidase @ph 5.8
           (Streptomyces Sp. Sa-Coo)
 pdb|1N4W|A Chain A, Atomic Resolution Structure Of Cholesterol Oxidase @ Ph
           7.3 (Streptomyces Sp. Sa-Coo)
 pdb|2GEW|A Chain A, Atomic Resolution Structure Of Cholesterol Oxidase @ Ph
           9.0 (Streptomyces Sp. Sa-Coo)
          Length = 504

 Score = 30.0 bits (66), Expect = 0.32,   Method: Composition-based stats.
 Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 7/66 (10%)

Query: 45  HHQCGTCKMGPATDRTAVVDPRLRVYGIQGLRVIDASIMPVLPGGHTVAPTYMIGEKGAD 104
           +H  G C +G ATD         RV G + L V D S++P   G +       + E+  +
Sbjct: 441 YHPLGGCVLGKATDDYG------RVAGYKNLYVTDGSLIPGSVGVNPFVTITALAERNVE 494

Query: 105 -MIKED 109
            +IK+D
Sbjct: 495 RIIKQD 500


>pdb|3CNJ|A Chain A, Cholesterol Oxidase From Streptomyces Sp. F359w Mutant
           (0.95a)
          Length = 499

 Score = 30.0 bits (66), Expect = 0.32,   Method: Composition-based stats.
 Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 7/66 (10%)

Query: 45  HHQCGTCKMGPATDRTAVVDPRLRVYGIQGLRVIDASIMPVLPGGHTVAPTYMIGEKGAD 104
           +H  G C +G ATD         RV G + L V D S++P   G +       + E+  +
Sbjct: 439 YHPLGGCVLGKATDDYG------RVAGYKNLYVTDGSLIPGSVGVNPFVTITALAERNVE 492

Query: 105 -MIKED 109
            +IK+D
Sbjct: 493 RIIKQD 498


>pdb|3GYI|A Chain A, Cholesterol Oxidase From Streptomyces Sp. N485d Mutant
           (1.0a)
          Length = 504

 Score = 29.3 bits (64), Expect = 0.53,   Method: Composition-based stats.
 Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 7/66 (10%)

Query: 45  HHQCGTCKMGPATDRTAVVDPRLRVYGIQGLRVIDASIMPVLPGGHTVAPTYMIGEKGAD 104
           +H  G C +G ATD         RV G + L V D S++P   G         + E+  +
Sbjct: 441 YHPLGGCVLGKATDDYG------RVAGYKNLYVTDGSLIPGSVGVDPFVTITALAERNVE 494

Query: 105 -MIKED 109
            +IK+D
Sbjct: 495 RIIKQD 500


>pdb|1IJH|A Chain A, Cholesterol Oxidase From Streptomyces Asn485leu Mutant
 pdb|3GYJ|A Chain A, Cholesterol Oxidase From Streptomyces Sp. N485l Mutant
           (0.92a)
          Length = 504

 Score = 28.9 bits (63), Expect = 0.80,   Method: Composition-based stats.
 Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 10/47 (21%)

Query: 45  HHQCGTCKMGPATDRTAVVDPRLRVYGIQGLRVIDASIMP----VLP 87
           +H  G C +G ATD         RV G + L V D S++P    VLP
Sbjct: 441 YHPLGGCVLGKATDDYG------RVAGYKNLYVTDGSLIPGSVGVLP 481


>pdb|3PCO|B Chain B, Crystal Structure Of E. Coli Phenylalanine-Trna Synthetase
           Complexed With Phenylalanine And Amp
 pdb|3PCO|D Chain D, Crystal Structure Of E. Coli Phenylalanine-Trna Synthetase
           Complexed With Phenylalanine And Amp
          Length = 795

 Score = 27.3 bits (59), Expect = 2.0,   Method: Composition-based stats.
 Identities = 14/34 (41%), Positives = 18/34 (52%)

Query: 73  QGLRVIDASIMPVLPGGHTVAPTYMIGEKGADMI 106
           QGLRV  A+I  VLPG   +    + GE    M+
Sbjct: 86  QGLRVAVATIGAVLPGDFKIKAAKLRGEPSEGML 119


>pdb|1V30|A Chain A, Crystal Structure Of Uncharacterized Protein Ph0828 From
           Pyrococcus Horikoshii
          Length = 124

 Score = 26.6 bits (57), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 9/20 (45%), Positives = 13/20 (65%)

Query: 101 KGADMIKEDWLPGYTPTFDF 120
           KGA  + EDW+ GY   F++
Sbjct: 27  KGAKFLGEDWIEGYQLYFEY 46


>pdb|3UCJ|A Chain A, Coccomyxa Beta-Carbonic Anhydrase In Complex With
           Acetazolamide
 pdb|3UCJ|B Chain B, Coccomyxa Beta-Carbonic Anhydrase In Complex With
           Acetazolamide
 pdb|3UCK|A Chain A, Coccomyxa Beta-Carbonic Anhydrase In Complex With
           Phosphate
 pdb|3UCK|B Chain B, Coccomyxa Beta-Carbonic Anhydrase In Complex With
           Phosphate
 pdb|3UCM|A Chain A, Coccomyxa Beta-Carbonic Anhydrase In Complex With
           Thiocyanate
 pdb|3UCM|B Chain B, Coccomyxa Beta-Carbonic Anhydrase In Complex With
           Thiocyanate
 pdb|3UCN|A Chain A, Coccomyxa Beta-Carbonic Anhydrase In Complex With Azide
 pdb|3UCN|B Chain B, Coccomyxa Beta-Carbonic Anhydrase In Complex With Azide
 pdb|3UCO|A Chain A, Coccomyxa Beta-Carbonic Anhydrase In Complex With Iodide
 pdb|3UCO|B Chain B, Coccomyxa Beta-Carbonic Anhydrase In Complex With Iodide
          Length = 227

 Score = 25.4 bits (54), Expect = 9.0,   Method: Compositional matrix adjust.
 Identities = 8/18 (44%), Positives = 12/18 (66%)

Query: 37  VKHLTMQTHHQCGTCKMG 54
           +KH+ +  H+ CG CK G
Sbjct: 95  IKHILVCGHYNCGACKAG 112


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.323    0.141    0.468 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,236,073
Number of Sequences: 62578
Number of extensions: 163419
Number of successful extensions: 290
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 272
Number of HSP's gapped (non-prelim): 24
length of query: 120
length of database: 14,973,337
effective HSP length: 82
effective length of query: 38
effective length of database: 9,841,941
effective search space: 373993758
effective search space used: 373993758
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)