BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10421
(120 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P18173|DHGL_DROME Glucose dehydrogenase [acceptor] OS=Drosophila melanogaster GN=Gld
PE=3 SV=3
Length = 625
Score = 115 bits (289), Expect = 7e-26, Method: Composition-based stats.
Identities = 54/110 (49%), Positives = 72/110 (65%)
Query: 1 MSETEPFQSIGSKLVDRPIPGCKHLPFGSDEYWVCCVKHLTMQTHHQCGTCKMGPATDRT 60
+S+T P + G +L + GC+ FGSD YW C V+ T +HQ G+CKMGP+ D
Sbjct: 499 LSQTTPLKQYGMRLDKTVVKGCEAHAFGSDAYWECAVRQNTGPENHQAGSCKMGPSHDPM 558
Query: 61 AVVDPRLRVYGIQGLRVIDASIMPVLPGGHTVAPTYMIGEKGADMIKEDW 110
AVV+ LRV+GI+GLRV+D SIMP + G+T AP MI EKGA ++K W
Sbjct: 559 AVVNHELRVHGIRGLRVMDTSIMPKVSSGNTHAPAVMIAEKGAYLLKRAW 608
>sp|P18172|DHGL_DROPS Glucose dehydrogenase [acceptor] OS=Drosophila pseudoobscura
pseudoobscura GN=Gld PE=3 SV=4
Length = 625
Score = 113 bits (283), Expect = 3e-25, Method: Composition-based stats.
Identities = 52/110 (47%), Positives = 71/110 (64%)
Query: 1 MSETEPFQSIGSKLVDRPIPGCKHLPFGSDEYWVCCVKHLTMQTHHQCGTCKMGPATDRT 60
+S+T P + G +L + GC+ F SD YW C V+ T +HQ G+CKMGP+ D
Sbjct: 499 LSQTSPLKQYGMRLDKTVVKGCESHAFASDAYWECAVRQNTGPENHQAGSCKMGPSHDPM 558
Query: 61 AVVDPRLRVYGIQGLRVIDASIMPVLPGGHTVAPTYMIGEKGADMIKEDW 110
AVV+ LRV+G++GLRV+D SIMP + G+T AP MI EKGA ++K W
Sbjct: 559 AVVNHELRVHGVRGLRVMDTSIMPKVTAGNTHAPAVMIAEKGAYLLKRAW 608
>sp|Q8NE62|CHDH_HUMAN Choline dehydrogenase, mitochondrial OS=Homo sapiens GN=CHDH PE=2
SV=2
Length = 594
Score = 77.8 bits (190), Expect = 2e-14, Method: Composition-based stats.
Identities = 37/63 (58%), Positives = 46/63 (73%)
Query: 45 HHQCGTCKMGPATDRTAVVDPRLRVYGIQGLRVIDASIMPVLPGGHTVAPTYMIGEKGAD 104
+H TCKMG +D TAVVDP+ RV G++ LRV+DASIMP + G+ APT MI EK AD
Sbjct: 510 YHPSCTCKMGQPSDPTAVVDPQTRVLGVENLRVVDASIMPSMVSGNLNAPTIMIAEKAAD 569
Query: 105 MIK 107
+IK
Sbjct: 570 IIK 572
>sp|Q1QXE1|BETA1_CHRSD Choline dehydrogenase OS=Chromohalobacter salexigens (strain DSM
3043 / ATCC BAA-138 / NCIMB 13768) GN=betA PE=3 SV=1
Length = 560
Score = 77.4 bits (189), Expect = 2e-14, Method: Composition-based stats.
Identities = 41/77 (53%), Positives = 51/77 (66%), Gaps = 1/77 (1%)
Query: 37 VKHLTMQTHHQCGTCKMGPATDRTAVVDPRLRVYGIQGLRVIDASIMPVLPGGHTVAPTY 96
V+ +H G+CKMG A D AVVD RV+G++GLRVIDASIMPV+ G+ APT
Sbjct: 466 VRQHAETAYHPAGSCKMGSADDAMAVVDGAGRVHGLEGLRVIDASIMPVIATGNLNAPTI 525
Query: 97 MIGEKGADMIK-EDWLP 112
MI EK AD ++ D LP
Sbjct: 526 MIAEKMADKVRGRDPLP 542
>sp|P64264|Y1310_MYCBO Uncharacterized GMC-type oxidoreductase Mb1310 OS=Mycobacterium
bovis (strain ATCC BAA-935 / AF2122/97) GN=Mb1310 PE=3
SV=1
Length = 528
Score = 77.0 bits (188), Expect = 3e-14, Method: Composition-based stats.
Identities = 36/63 (57%), Positives = 47/63 (74%), Gaps = 2/63 (3%)
Query: 45 HHQCGTCKMGPATDRTAVVDPRLRVYGIQGLRVIDASIMPVLPGGHTVAPTYMIGEKGAD 104
+H GTC+MG +D +VVDP+LRV G+ GLRV DAS+MP GHT AP+ +IGEK AD
Sbjct: 467 YHPMGTCRMG--SDEASVVDPQLRVRGVDGLRVADASVMPSTVRGHTHAPSVLIGEKAAD 524
Query: 105 MIK 107
+I+
Sbjct: 525 LIR 527
>sp|P64263|Y1279_MYCTU Uncharacterized GMC-type oxidoreductase Rv1279/MT1316
OS=Mycobacterium tuberculosis GN=Rv1279 PE=3 SV=1
Length = 528
Score = 77.0 bits (188), Expect = 3e-14, Method: Composition-based stats.
Identities = 36/63 (57%), Positives = 47/63 (74%), Gaps = 2/63 (3%)
Query: 45 HHQCGTCKMGPATDRTAVVDPRLRVYGIQGLRVIDASIMPVLPGGHTVAPTYMIGEKGAD 104
+H GTC+MG +D +VVDP+LRV G+ GLRV DAS+MP GHT AP+ +IGEK AD
Sbjct: 467 YHPMGTCRMG--SDEASVVDPQLRVRGVDGLRVADASVMPSTVRGHTHAPSVLIGEKAAD 524
Query: 105 MIK 107
+I+
Sbjct: 525 LIR 527
>sp|Q1RFM3|BETA_ECOUT Choline dehydrogenase OS=Escherichia coli (strain UTI89 / UPEC)
GN=betA PE=3 SV=2
Length = 562
Score = 75.9 bits (185), Expect = 6e-14, Method: Composition-based stats.
Identities = 42/74 (56%), Positives = 51/74 (68%), Gaps = 3/74 (4%)
Query: 46 HQCGTCKMGPATDRTAVVDPRLRVYGIQGLRVIDASIMPVLPGGHTVAPTYMIGEKGADM 105
H CGTCKMG D AVVD RV+G++GLRV+DASIMP + G+ A T MIGEK ADM
Sbjct: 473 HPCGTCKMG--YDEMAVVDAEGRVHGLEGLRVVDASIMPQIITGNLNATTIMIGEKMADM 530
Query: 106 IK-EDWLPGYTPTF 118
I+ +D LP T +
Sbjct: 531 IRGKDALPRSTARY 544
>sp|B7MCD0|BETA_ECO45 Choline dehydrogenase OS=Escherichia coli O45:K1 (strain S88 /
ExPEC) GN=betA PE=3 SV=1
Length = 562
Score = 75.9 bits (185), Expect = 6e-14, Method: Composition-based stats.
Identities = 42/74 (56%), Positives = 51/74 (68%), Gaps = 3/74 (4%)
Query: 46 HQCGTCKMGPATDRTAVVDPRLRVYGIQGLRVIDASIMPVLPGGHTVAPTYMIGEKGADM 105
H CGTCKMG D AVVD RV+G++GLRV+DASIMP + G+ A T MIGEK ADM
Sbjct: 473 HPCGTCKMG--YDEMAVVDAEGRVHGLEGLRVVDASIMPQIITGNLNATTIMIGEKMADM 530
Query: 106 IK-EDWLPGYTPTF 118
I+ +D LP T +
Sbjct: 531 IRGKDALPRSTARY 544
>sp|Q985M5|BETA_RHILO Choline dehydrogenase OS=Rhizobium loti (strain MAFF303099) GN=betA
PE=3 SV=1
Length = 550
Score = 75.9 bits (185), Expect = 7e-14, Method: Composition-based stats.
Identities = 35/62 (56%), Positives = 43/62 (69%)
Query: 45 HHQCGTCKMGPATDRTAVVDPRLRVYGIQGLRVIDASIMPVLPGGHTVAPTYMIGEKGAD 104
+H CGTCKMG A D T+VVDP RV G+ GLRV D+SI P + G+ AP+ M GEK +D
Sbjct: 465 YHPCGTCKMGRADDVTSVVDPECRVIGVDGLRVADSSIFPRVTNGNLNAPSIMTGEKASD 524
Query: 105 MI 106
I
Sbjct: 525 HI 526
>sp|B7N8L3|BETA_ECOLU Choline dehydrogenase OS=Escherichia coli O17:K52:H18 (strain
UMN026 / ExPEC) GN=betA PE=3 SV=1
Length = 556
Score = 75.1 bits (183), Expect = 1e-13, Method: Composition-based stats.
Identities = 42/74 (56%), Positives = 51/74 (68%), Gaps = 3/74 (4%)
Query: 46 HQCGTCKMGPATDRTAVVDPRLRVYGIQGLRVIDASIMPVLPGGHTVAPTYMIGEKGADM 105
H CGTCKMG D AVVD RV+G++GLRV+DASIMP + G+ A T MIGEK ADM
Sbjct: 473 HPCGTCKMG--YDEMAVVDGEGRVHGLEGLRVVDASIMPQIITGNLNATTIMIGEKMADM 530
Query: 106 IK-EDWLPGYTPTF 118
I+ +D LP T +
Sbjct: 531 IRGKDALPRSTAGY 544
>sp|B1LIJ7|BETA_ECOSM Choline dehydrogenase OS=Escherichia coli (strain SMS-3-5 / SECEC)
GN=betA PE=3 SV=1
Length = 562
Score = 74.3 bits (181), Expect = 2e-13, Method: Composition-based stats.
Identities = 41/74 (55%), Positives = 51/74 (68%), Gaps = 3/74 (4%)
Query: 46 HQCGTCKMGPATDRTAVVDPRLRVYGIQGLRVIDASIMPVLPGGHTVAPTYMIGEKGADM 105
H CGTCKMG D +VVD RV+G++GLRV+DASIMP + G+ A T MIGEK ADM
Sbjct: 473 HPCGTCKMG--YDEMSVVDGEGRVHGLEGLRVVDASIMPQIITGNLNATTIMIGEKMADM 530
Query: 106 IK-EDWLPGYTPTF 118
I+ +D LP T +
Sbjct: 531 IRGKDALPRSTAGY 544
>sp|B0CKN4|BETA_BRUSI Choline dehydrogenase OS=Brucella suis (strain ATCC 23445 / NCTC
10510) GN=betA PE=3 SV=1
Length = 549
Score = 73.9 bits (180), Expect = 2e-13, Method: Composition-based stats.
Identities = 33/61 (54%), Positives = 41/61 (67%)
Query: 46 HQCGTCKMGPATDRTAVVDPRLRVYGIQGLRVIDASIMPVLPGGHTVAPTYMIGEKGADM 105
H CGTCKMG D AVVDP RV G++GLRV D+SI P + G+ P+ M+GEK +D
Sbjct: 465 HPCGTCKMGAVDDPMAVVDPECRVIGVEGLRVADSSIFPRITNGNLNGPSIMVGEKASDH 524
Query: 106 I 106
I
Sbjct: 525 I 525
>sp|A5VPA6|BETA_BRUO2 Choline dehydrogenase OS=Brucella ovis (strain ATCC 25840 / 63/290
/ NCTC 10512) GN=betA PE=3 SV=1
Length = 549
Score = 73.9 bits (180), Expect = 2e-13, Method: Composition-based stats.
Identities = 33/61 (54%), Positives = 41/61 (67%)
Query: 46 HQCGTCKMGPATDRTAVVDPRLRVYGIQGLRVIDASIMPVLPGGHTVAPTYMIGEKGADM 105
H CGTCKMG D AVVDP RV G++GLRV D+SI P + G+ P+ M+GEK +D
Sbjct: 465 HPCGTCKMGAVDDPMAVVDPECRVIGVEGLRVADSSIFPRITNGNLNGPSIMVGEKASDH 524
Query: 106 I 106
I
Sbjct: 525 I 525
>sp|Q8G1Z8|BETA_BRUSU Choline dehydrogenase OS=Brucella suis biovar 1 (strain 1330)
GN=betA PE=3 SV=1
Length = 549
Score = 73.9 bits (180), Expect = 2e-13, Method: Composition-based stats.
Identities = 33/61 (54%), Positives = 41/61 (67%)
Query: 46 HQCGTCKMGPATDRTAVVDPRLRVYGIQGLRVIDASIMPVLPGGHTVAPTYMIGEKGADM 105
H CGTCKMG D AVVDP RV G++GLRV D+SI P + G+ P+ M+GEK +D
Sbjct: 465 HPCGTCKMGAVDDPMAVVDPECRVIGVEGLRVADSSIFPRITNGNLNGPSIMVGEKASDH 524
Query: 106 I 106
I
Sbjct: 525 I 525
>sp|A9M9H8|BETA_BRUC2 Choline dehydrogenase OS=Brucella canis (strain ATCC 23365 / NCTC
10854) GN=betA PE=3 SV=1
Length = 549
Score = 73.9 bits (180), Expect = 2e-13, Method: Composition-based stats.
Identities = 33/61 (54%), Positives = 41/61 (67%)
Query: 46 HQCGTCKMGPATDRTAVVDPRLRVYGIQGLRVIDASIMPVLPGGHTVAPTYMIGEKGADM 105
H CGTCKMG D AVVDP RV G++GLRV D+SI P + G+ P+ M+GEK +D
Sbjct: 465 HPCGTCKMGAVDDPMAVVDPECRVIGVEGLRVADSSIFPRITNGNLNGPSIMVGEKASDH 524
Query: 106 I 106
I
Sbjct: 525 I 525
>sp|B9JBA2|BETA_AGRRK Choline dehydrogenase OS=Agrobacterium radiobacter (strain K84 /
ATCC BAA-868) GN=betA PE=3 SV=1
Length = 549
Score = 73.6 bits (179), Expect = 3e-13, Method: Composition-based stats.
Identities = 35/62 (56%), Positives = 41/62 (66%)
Query: 45 HHQCGTCKMGPATDRTAVVDPRLRVYGIQGLRVIDASIMPVLPGGHTVAPTYMIGEKGAD 104
+H CGTCKMG D AVVDP RV G++GLRV D+SI P L G+ P+ M GEK AD
Sbjct: 464 YHPCGTCKMGSKDDPMAVVDPDTRVIGVEGLRVADSSIFPSLTYGNLNGPSIMTGEKAAD 523
Query: 105 MI 106
I
Sbjct: 524 HI 525
>sp|A6U6Y8|BETA_SINMW Choline dehydrogenase OS=Sinorhizobium medicae (strain WSM419)
GN=betA PE=3 SV=1
Length = 549
Score = 73.6 bits (179), Expect = 3e-13, Method: Composition-based stats.
Identities = 35/62 (56%), Positives = 41/62 (66%)
Query: 45 HHQCGTCKMGPATDRTAVVDPRLRVYGIQGLRVIDASIMPVLPGGHTVAPTYMIGEKGAD 104
+H CGTCKMG D AVVDP RV G+ GLRV D+SI P + G+ AP+ M GEK AD
Sbjct: 464 YHPCGTCKMGAKDDPMAVVDPETRVIGVDGLRVADSSIFPHITYGNLNAPSIMTGEKAAD 523
Query: 105 MI 106
I
Sbjct: 524 HI 525
>sp|P54223|BETA_RHIME Choline dehydrogenase OS=Rhizobium meliloti (strain 1021) GN=betA
PE=3 SV=2
Length = 549
Score = 73.6 bits (179), Expect = 3e-13, Method: Composition-based stats.
Identities = 35/62 (56%), Positives = 41/62 (66%)
Query: 45 HHQCGTCKMGPATDRTAVVDPRLRVYGIQGLRVIDASIMPVLPGGHTVAPTYMIGEKGAD 104
+H CGTCKMG D AVVDP RV G+ GLRV D+SI P + G+ AP+ M GEK AD
Sbjct: 464 YHPCGTCKMGAKDDPMAVVDPETRVIGVDGLRVADSSIFPHITYGNLNAPSIMTGEKSAD 523
Query: 105 MI 106
I
Sbjct: 524 HI 525
>sp|A7MFA8|BETA_CROS8 Choline dehydrogenase OS=Cronobacter sakazakii (strain ATCC
BAA-894) GN=betA PE=3 SV=1
Length = 559
Score = 73.6 bits (179), Expect = 4e-13, Method: Composition-based stats.
Identities = 41/80 (51%), Positives = 53/80 (66%), Gaps = 7/80 (8%)
Query: 37 VKHLTMQTHHQCGTCKMGPATDRTAVVDPRLRVYGIQGLRVIDASIMPVLPGGHTVAPTY 96
V++ +H CGTCKMG +D AVVD RV+G++GLRV+DASIMP++ G+ A T
Sbjct: 464 VRNHAETAYHPCGTCKMG--SDEMAVVDDEGRVHGLEGLRVVDASIMPLIITGNLNATTI 521
Query: 97 MIGEKGADMIKEDWLPGYTP 116
MIGEK AD I+ G TP
Sbjct: 522 MIGEKIADNIR-----GRTP 536
>sp|C3MIE4|BETA_RHISN Choline dehydrogenase OS=Rhizobium sp. (strain NGR234) GN=betA PE=3
SV=1
Length = 549
Score = 73.6 bits (179), Expect = 4e-13, Method: Composition-based stats.
Identities = 35/62 (56%), Positives = 41/62 (66%)
Query: 45 HHQCGTCKMGPATDRTAVVDPRLRVYGIQGLRVIDASIMPVLPGGHTVAPTYMIGEKGAD 104
+H CGTCKMG D AVVDP RV G+ GLRV D+SI P + G+ AP+ M GEK AD
Sbjct: 464 YHPCGTCKMGSKDDPMAVVDPETRVIGVDGLRVADSSIFPHVTYGNLNAPSIMTGEKAAD 523
Query: 105 MI 106
I
Sbjct: 524 HI 525
>sp|Q6UPE0|CHDH_RAT Choline dehydrogenase, mitochondrial OS=Rattus norvegicus GN=Chdh
PE=1 SV=1
Length = 599
Score = 73.2 bits (178), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 40/79 (50%), Positives = 50/79 (63%)
Query: 29 SDEYWVCCVKHLTMQTHHQCGTCKMGPATDRTAVVDPRLRVYGIQGLRVIDASIMPVLPG 88
SD+ V+ +H TCKMG +D TAVVD + RV G++ LRVIDASIMP +
Sbjct: 499 SDKEIDAFVRAKADSAYHPSCTCKMGQPSDPTAVVDQQTRVIGVENLRVIDASIMPSVVS 558
Query: 89 GHTVAPTYMIGEKGADMIK 107
G+ APT MI EK AD+IK
Sbjct: 559 GNLNAPTIMIAEKAADVIK 577
>sp|Q0TKW1|BETA_ECOL5 Choline dehydrogenase OS=Escherichia coli O6:K15:H31 (strain 536 /
UPEC) GN=betA PE=3 SV=2
Length = 556
Score = 73.2 bits (178), Expect = 5e-13, Method: Composition-based stats.
Identities = 41/74 (55%), Positives = 51/74 (68%), Gaps = 3/74 (4%)
Query: 46 HQCGTCKMGPATDRTAVVDPRLRVYGIQGLRVIDASIMPVLPGGHTVAPTYMIGEKGADM 105
H CGTCKMG D AVVD RV+G++GLRV+DASIMP + G+ A T MIGEK ADM
Sbjct: 473 HPCGTCKMG--YDEMAVVDGEGRVHGLEGLRVVDASIMPQIITGNLNATTIMIGEKIADM 530
Query: 106 IK-EDWLPGYTPTF 118
I+ ++ LP T +
Sbjct: 531 IRGKEALPRSTAGY 544
>sp|B7UJG4|BETA_ECO27 Choline dehydrogenase OS=Escherichia coli O127:H6 (strain E2348/69
/ EPEC) GN=betA PE=3 SV=1
Length = 556
Score = 73.2 bits (178), Expect = 5e-13, Method: Composition-based stats.
Identities = 41/74 (55%), Positives = 51/74 (68%), Gaps = 3/74 (4%)
Query: 46 HQCGTCKMGPATDRTAVVDPRLRVYGIQGLRVIDASIMPVLPGGHTVAPTYMIGEKGADM 105
H CGTCKMG D AVVD RV+G++GLRV+DASIMP + G+ A T MIGEK ADM
Sbjct: 473 HPCGTCKMG--YDEMAVVDGEGRVHGLEGLRVVDASIMPQIITGNLNATTIMIGEKIADM 530
Query: 106 IK-EDWLPGYTPTF 118
I+ ++ LP T +
Sbjct: 531 IRGKEALPRSTAGY 544
>sp|Q8FKI9|BETA_ECOL6 Choline dehydrogenase OS=Escherichia coli O6:H1 (strain CFT073 /
ATCC 700928 / UPEC) GN=betA PE=3 SV=2
Length = 556
Score = 73.2 bits (178), Expect = 5e-13, Method: Composition-based stats.
Identities = 41/74 (55%), Positives = 51/74 (68%), Gaps = 3/74 (4%)
Query: 46 HQCGTCKMGPATDRTAVVDPRLRVYGIQGLRVIDASIMPVLPGGHTVAPTYMIGEKGADM 105
H CGTCKMG D AVVD RV+G++GLRV+DASIMP + G+ A T MIGEK ADM
Sbjct: 473 HPCGTCKMG--YDEMAVVDGEGRVHGLEGLRVVDASIMPQIITGNLNATTIMIGEKIADM 530
Query: 106 IK-EDWLPGYTPTF 118
I+ ++ LP T +
Sbjct: 531 IRGKEALPRSTAGY 544
>sp|Q1MJU4|BETA_RHIL3 Choline dehydrogenase OS=Rhizobium leguminosarum bv. viciae (strain
3841) GN=betA PE=3 SV=1
Length = 549
Score = 72.8 bits (177), Expect = 6e-13, Method: Composition-based stats.
Identities = 37/78 (47%), Positives = 46/78 (58%)
Query: 29 SDEYWVCCVKHLTMQTHHQCGTCKMGPATDRTAVVDPRLRVYGIQGLRVIDASIMPVLPG 88
SDE ++ +H CGTC+MG D AVVDP+ RV GI GLRV D+SI P +
Sbjct: 448 SDEEIDAFLREHLESAYHPCGTCRMGAKDDPMAVVDPQTRVIGIDGLRVADSSIFPHVTY 507
Query: 89 GHTVAPTYMIGEKGADMI 106
G+ P+ M GEK AD I
Sbjct: 508 GNLNGPSIMTGEKAADHI 525
>sp|Q2KB43|BETA_RHIEC Choline dehydrogenase OS=Rhizobium etli (strain CFN 42 / ATCC
51251) GN=betA PE=3 SV=1
Length = 549
Score = 72.8 bits (177), Expect = 6e-13, Method: Composition-based stats.
Identities = 37/78 (47%), Positives = 46/78 (58%)
Query: 29 SDEYWVCCVKHLTMQTHHQCGTCKMGPATDRTAVVDPRLRVYGIQGLRVIDASIMPVLPG 88
SDE ++ +H CGTCKMG D AVVDP+ RV G+ GLRV D+SI P +
Sbjct: 448 SDEQIDSFLREHLESAYHPCGTCKMGAKDDPMAVVDPQTRVIGVDGLRVADSSIFPHVTY 507
Query: 89 GHTVAPTYMIGEKGADMI 106
G+ P+ M GEK AD I
Sbjct: 508 GNLNGPSIMTGEKAADHI 525
>sp|B3PTE0|BETA_RHIE6 Choline dehydrogenase OS=Rhizobium etli (strain CIAT 652) GN=betA
PE=3 SV=1
Length = 549
Score = 72.8 bits (177), Expect = 6e-13, Method: Composition-based stats.
Identities = 37/78 (47%), Positives = 46/78 (58%)
Query: 29 SDEYWVCCVKHLTMQTHHQCGTCKMGPATDRTAVVDPRLRVYGIQGLRVIDASIMPVLPG 88
SDE ++ +H CGTCKMG D AVVDP+ RV G+ GLRV D+SI P +
Sbjct: 448 SDEQIDAFLREHLESAYHPCGTCKMGAKDDPMAVVDPQTRVIGVDGLRVADSSIFPHVTY 507
Query: 89 GHTVAPTYMIGEKGADMI 106
G+ P+ M GEK AD I
Sbjct: 508 GNLNGPSIMTGEKAADHI 525
>sp|Q8BJ64|CHDH_MOUSE Choline dehydrogenase, mitochondrial OS=Mus musculus GN=Chdh PE=1
SV=1
Length = 596
Score = 72.4 bits (176), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 38/79 (48%), Positives = 51/79 (64%)
Query: 29 SDEYWVCCVKHLTMQTHHQCGTCKMGPATDRTAVVDPRLRVYGIQGLRVIDASIMPVLPG 88
SD+ V+ +H TCKMG ++D TAVVD + +V G++ LRV+DASIMP +
Sbjct: 496 SDKEIDAFVRAKADSAYHPSCTCKMGRSSDPTAVVDAQTKVIGVENLRVVDASIMPSVVS 555
Query: 89 GHTVAPTYMIGEKGADMIK 107
G+ APT MI EK AD+IK
Sbjct: 556 GNLNAPTVMIAEKAADIIK 574
>sp|B6I074|BETA_ECOSE Choline dehydrogenase OS=Escherichia coli (strain SE11) GN=betA
PE=3 SV=1
Length = 556
Score = 72.4 bits (176), Expect = 8e-13, Method: Composition-based stats.
Identities = 40/74 (54%), Positives = 51/74 (68%), Gaps = 3/74 (4%)
Query: 46 HQCGTCKMGPATDRTAVVDPRLRVYGIQGLRVIDASIMPVLPGGHTVAPTYMIGEKGADM 105
H CGTCKMG D +VVD RV+G++GLRV+DASIMP + G+ A T MIGEK ADM
Sbjct: 473 HPCGTCKMG--YDEMSVVDGEGRVHGLEGLRVVDASIMPQIITGNLNATTIMIGEKIADM 530
Query: 106 IK-EDWLPGYTPTF 118
I+ ++ LP T +
Sbjct: 531 IRGQEALPRSTAGY 544
>sp|P17444|BETA_ECOLI Choline dehydrogenase OS=Escherichia coli (strain K12) GN=betA PE=1
SV=1
Length = 556
Score = 72.4 bits (176), Expect = 8e-13, Method: Composition-based stats.
Identities = 40/74 (54%), Positives = 51/74 (68%), Gaps = 3/74 (4%)
Query: 46 HQCGTCKMGPATDRTAVVDPRLRVYGIQGLRVIDASIMPVLPGGHTVAPTYMIGEKGADM 105
H CGTCKMG D +VVD RV+G++GLRV+DASIMP + G+ A T MIGEK ADM
Sbjct: 473 HPCGTCKMG--YDEMSVVDGEGRVHGLEGLRVVDASIMPQIITGNLNATTIMIGEKIADM 530
Query: 106 IK-EDWLPGYTPTF 118
I+ ++ LP T +
Sbjct: 531 IRGQEALPRSTAGY 544
>sp|B1J0W6|BETA_ECOLC Choline dehydrogenase OS=Escherichia coli (strain ATCC 8739 / DSM
1576 / Crooks) GN=betA PE=3 SV=1
Length = 556
Score = 72.4 bits (176), Expect = 8e-13, Method: Composition-based stats.
Identities = 40/74 (54%), Positives = 51/74 (68%), Gaps = 3/74 (4%)
Query: 46 HQCGTCKMGPATDRTAVVDPRLRVYGIQGLRVIDASIMPVLPGGHTVAPTYMIGEKGADM 105
H CGTCKMG D +VVD RV+G++GLRV+DASIMP + G+ A T MIGEK ADM
Sbjct: 473 HPCGTCKMG--YDEMSVVDGEGRVHGLEGLRVVDASIMPQIITGNLNATTIMIGEKIADM 530
Query: 106 IK-EDWLPGYTPTF 118
I+ ++ LP T +
Sbjct: 531 IRGQEALPRSTAGY 544
>sp|A7ZWV4|BETA_ECOHS Choline dehydrogenase OS=Escherichia coli O9:H4 (strain HS) GN=betA
PE=3 SV=1
Length = 556
Score = 72.4 bits (176), Expect = 8e-13, Method: Composition-based stats.
Identities = 40/74 (54%), Positives = 51/74 (68%), Gaps = 3/74 (4%)
Query: 46 HQCGTCKMGPATDRTAVVDPRLRVYGIQGLRVIDASIMPVLPGGHTVAPTYMIGEKGADM 105
H CGTCKMG D +VVD RV+G++GLRV+DASIMP + G+ A T MIGEK ADM
Sbjct: 473 HPCGTCKMG--YDEMSVVDGEGRVHGLEGLRVVDASIMPQIITGNLNATTIMIGEKIADM 530
Query: 106 IK-EDWLPGYTPTF 118
I+ ++ LP T +
Sbjct: 531 IRGQEALPRSTAGY 544
>sp|B1XE52|BETA_ECODH Choline dehydrogenase OS=Escherichia coli (strain K12 / DH10B)
GN=betA PE=3 SV=1
Length = 556
Score = 72.4 bits (176), Expect = 8e-13, Method: Composition-based stats.
Identities = 40/74 (54%), Positives = 51/74 (68%), Gaps = 3/74 (4%)
Query: 46 HQCGTCKMGPATDRTAVVDPRLRVYGIQGLRVIDASIMPVLPGGHTVAPTYMIGEKGADM 105
H CGTCKMG D +VVD RV+G++GLRV+DASIMP + G+ A T MIGEK ADM
Sbjct: 473 HPCGTCKMG--YDEMSVVDGEGRVHGLEGLRVVDASIMPQIITGNLNATTIMIGEKIADM 530
Query: 106 IK-EDWLPGYTPTF 118
I+ ++ LP T +
Sbjct: 531 IRGQEALPRSTAGY 544
>sp|B7M2V5|BETA_ECO8A Choline dehydrogenase OS=Escherichia coli O8 (strain IAI1) GN=betA
PE=3 SV=1
Length = 556
Score = 72.4 bits (176), Expect = 8e-13, Method: Composition-based stats.
Identities = 40/74 (54%), Positives = 51/74 (68%), Gaps = 3/74 (4%)
Query: 46 HQCGTCKMGPATDRTAVVDPRLRVYGIQGLRVIDASIMPVLPGGHTVAPTYMIGEKGADM 105
H CGTCKMG D +VVD RV+G++GLRV+DASIMP + G+ A T MIGEK ADM
Sbjct: 473 HPCGTCKMG--YDEMSVVDGEGRVHGLEGLRVVDASIMPQIITGNLNATTIMIGEKIADM 530
Query: 106 IK-EDWLPGYTPTF 118
I+ ++ LP T +
Sbjct: 531 IRGQEALPRSTAGY 544
>sp|B7L439|BETA_ECO55 Choline dehydrogenase OS=Escherichia coli (strain 55989 / EAEC)
GN=betA PE=3 SV=1
Length = 556
Score = 72.4 bits (176), Expect = 8e-13, Method: Composition-based stats.
Identities = 40/74 (54%), Positives = 51/74 (68%), Gaps = 3/74 (4%)
Query: 46 HQCGTCKMGPATDRTAVVDPRLRVYGIQGLRVIDASIMPVLPGGHTVAPTYMIGEKGADM 105
H CGTCKMG D +VVD RV+G++GLRV+DASIMP + G+ A T MIGEK ADM
Sbjct: 473 HPCGTCKMG--YDEMSVVDGEGRVHGLEGLRVVDASIMPQIITGNLNATTIMIGEKIADM 530
Query: 106 IK-EDWLPGYTPTF 118
I+ ++ LP T +
Sbjct: 531 IRGQEALPRSTAGY 544
>sp|A7ZI50|BETA_ECO24 Choline dehydrogenase OS=Escherichia coli O139:H28 (strain E24377A
/ ETEC) GN=betA PE=3 SV=1
Length = 556
Score = 72.4 bits (176), Expect = 8e-13, Method: Composition-based stats.
Identities = 40/74 (54%), Positives = 51/74 (68%), Gaps = 3/74 (4%)
Query: 46 HQCGTCKMGPATDRTAVVDPRLRVYGIQGLRVIDASIMPVLPGGHTVAPTYMIGEKGADM 105
H CGTCKMG D +VVD RV+G++GLRV+DASIMP + G+ A T MIGEK ADM
Sbjct: 473 HPCGTCKMG--YDEMSVVDGEGRVHGLEGLRVVDASIMPQIITGNLNATTIMIGEKIADM 530
Query: 106 IK-EDWLPGYTPTF 118
I+ ++ LP T +
Sbjct: 531 IRGQEALPRSTAGY 544
>sp|B5Z1R0|BETA_ECO5E Choline dehydrogenase OS=Escherichia coli O157:H7 (strain EC4115 /
EHEC) GN=betA PE=3 SV=1
Length = 562
Score = 72.4 bits (176), Expect = 8e-13, Method: Composition-based stats.
Identities = 40/74 (54%), Positives = 51/74 (68%), Gaps = 3/74 (4%)
Query: 46 HQCGTCKMGPATDRTAVVDPRLRVYGIQGLRVIDASIMPVLPGGHTVAPTYMIGEKGADM 105
H CGTCKMG D +VVD RV+G++GLRV+DASIMP + G+ A T MIGEK ADM
Sbjct: 473 HPCGTCKMG--YDEMSVVDGEGRVHGLEGLRVVDASIMPQIITGNLNATTIMIGEKMADM 530
Query: 106 IK-EDWLPGYTPTF 118
I+ ++ LP T +
Sbjct: 531 IRGKEALPRSTAGY 544
>sp|Q8X6C6|BETA_ECO57 Choline dehydrogenase OS=Escherichia coli O157:H7 GN=betA PE=3 SV=1
Length = 562
Score = 72.4 bits (176), Expect = 8e-13, Method: Composition-based stats.
Identities = 40/74 (54%), Positives = 51/74 (68%), Gaps = 3/74 (4%)
Query: 46 HQCGTCKMGPATDRTAVVDPRLRVYGIQGLRVIDASIMPVLPGGHTVAPTYMIGEKGADM 105
H CGTCKMG D +VVD RV+G++GLRV+DASIMP + G+ A T MIGEK ADM
Sbjct: 473 HPCGTCKMG--YDEMSVVDGEGRVHGLEGLRVVDASIMPQIITGNLNATTIMIGEKMADM 530
Query: 106 IK-EDWLPGYTPTF 118
I+ ++ LP T +
Sbjct: 531 IRGKEALPRSTAGY 544
>sp|B5ZUG2|BETA_RHILW Choline dehydrogenase OS=Rhizobium leguminosarum bv. trifolii
(strain WSM2304) GN=betA PE=3 SV=1
Length = 549
Score = 72.0 bits (175), Expect = 1e-12, Method: Composition-based stats.
Identities = 36/78 (46%), Positives = 46/78 (58%)
Query: 29 SDEYWVCCVKHLTMQTHHQCGTCKMGPATDRTAVVDPRLRVYGIQGLRVIDASIMPVLPG 88
SDE ++ +H CGTCKMG D AVVDP+ RV G++ LRV D+SI P +
Sbjct: 448 SDEEIDAFLREHLESAYHPCGTCKMGAKDDPMAVVDPQTRVIGVEALRVADSSIFPHVTY 507
Query: 89 GHTVAPTYMIGEKGADMI 106
G+ P+ M GEK AD I
Sbjct: 508 GNLNGPSIMTGEKAADHI 525
>sp|Q0T7N0|BETA_SHIF8 Choline dehydrogenase OS=Shigella flexneri serotype 5b (strain
8401) GN=betA PE=3 SV=1
Length = 556
Score = 71.6 bits (174), Expect = 1e-12, Method: Composition-based stats.
Identities = 37/62 (59%), Positives = 45/62 (72%), Gaps = 2/62 (3%)
Query: 46 HQCGTCKMGPATDRTAVVDPRLRVYGIQGLRVIDASIMPVLPGGHTVAPTYMIGEKGADM 105
H CGTCKMG D +VVD RV+G++GLRV+DASIMP + G+ A T MIGEK ADM
Sbjct: 473 HPCGTCKMG--YDEMSVVDGEGRVHGLEGLRVVDASIMPQIITGNLNATTIMIGEKIADM 530
Query: 106 IK 107
I+
Sbjct: 531 IR 532
>sp|Q8UH55|BETA_AGRT5 Choline dehydrogenase OS=Agrobacterium tumefaciens (strain C58 /
ATCC 33970) GN=betA PE=3 SV=2
Length = 549
Score = 71.6 bits (174), Expect = 1e-12, Method: Composition-based stats.
Identities = 33/62 (53%), Positives = 41/62 (66%)
Query: 45 HHQCGTCKMGPATDRTAVVDPRLRVYGIQGLRVIDASIMPVLPGGHTVAPTYMIGEKGAD 104
+H CGTC+MG D AVVDP RV G++GLRV D+SI P + G+ P+ M GEK AD
Sbjct: 464 YHPCGTCRMGDRNDPMAVVDPECRVIGVEGLRVADSSIFPHVTYGNLNGPSIMTGEKAAD 523
Query: 105 MI 106
I
Sbjct: 524 HI 525
>sp|A6X2G7|BETA_OCHA4 Choline dehydrogenase OS=Ochrobactrum anthropi (strain ATCC 49188 /
DSM 6882 / NCTC 12168) GN=betA PE=3 SV=1
Length = 549
Score = 71.2 bits (173), Expect = 2e-12, Method: Composition-based stats.
Identities = 33/70 (47%), Positives = 42/70 (60%)
Query: 37 VKHLTMQTHHQCGTCKMGPATDRTAVVDPRLRVYGIQGLRVIDASIMPVLPGGHTVAPTY 96
+K H CGTCKMG D AVVD RV G++GLRV D+SI P + G+ P+
Sbjct: 456 IKEHVESAFHPCGTCKMGAVDDPMAVVDAECRVIGVEGLRVADSSIFPRITNGNLNGPSI 515
Query: 97 MIGEKGADMI 106
M+GEK +D I
Sbjct: 516 MVGEKASDHI 525
>sp|Q9L4K0|BETA2_CHRSD Choline dehydrogenase OS=Chromohalobacter salexigens (strain DSM
3043 / ATCC BAA-138 / NCIMB 13768) GN=betA PE=1 SV=1
Length = 558
Score = 71.2 bits (173), Expect = 2e-12, Method: Composition-based stats.
Identities = 37/79 (46%), Positives = 50/79 (63%), Gaps = 2/79 (2%)
Query: 29 SDEYWVCCVKHLTMQTHHQCGTCKMGPATDRTAVVDPRLRVYGIQGLRVIDASIMPVLPG 88
SDE VK +H CG+C+MG AV D + RV+G++GLRV+DAS+ PV+P
Sbjct: 458 SDEELDNFVKQHAETAYHPCGSCRMGEGD--MAVTDAQGRVHGLEGLRVVDASLFPVIPT 515
Query: 89 GHTVAPTYMIGEKGADMIK 107
G+ APT M+ EK AD I+
Sbjct: 516 GNLNAPTIMLAEKIADRIR 534
>sp|Q8YFY2|BETA_BRUME Choline dehydrogenase OS=Brucella melitensis biotype 1 (strain 16M
/ ATCC 23456 / NCTC 10094) GN=betA PE=3 SV=2
Length = 549
Score = 71.2 bits (173), Expect = 2e-12, Method: Composition-based stats.
Identities = 32/61 (52%), Positives = 40/61 (65%)
Query: 46 HQCGTCKMGPATDRTAVVDPRLRVYGIQGLRVIDASIMPVLPGGHTVAPTYMIGEKGADM 105
H CGTCKMG D AVVDP RV G++GLRV D+SI P + G+ P+ M+GEK +
Sbjct: 465 HPCGTCKMGAVDDPMAVVDPECRVIGVEGLRVADSSIFPRITNGNLNGPSIMVGEKASGH 524
Query: 106 I 106
I
Sbjct: 525 I 525
>sp|A6T613|BETA_KLEP7 Choline dehydrogenase OS=Klebsiella pneumoniae subsp. pneumoniae
(strain ATCC 700721 / MGH 78578) GN=betA PE=3 SV=1
Length = 554
Score = 71.2 bits (173), Expect = 2e-12, Method: Composition-based stats.
Identities = 41/74 (55%), Positives = 49/74 (66%), Gaps = 3/74 (4%)
Query: 46 HQCGTCKMGPATDRTAVVDPRLRVYGIQGLRVIDASIMPVLPGGHTVAPTYMIGEKGADM 105
H CGTCKMG D AVVD RV+G++GLRV+DASIMP + G+ A T MIGEK AD
Sbjct: 473 HPCGTCKMG--YDEMAVVDGEGRVHGLEGLRVVDASIMPQIITGNLNATTIMIGEKMADA 530
Query: 106 IK-EDWLPGYTPTF 118
I+ LP T T+
Sbjct: 531 IRGRQPLPRSTATY 544
>sp|Q9WWW2|ALKJ_PSEPU Alcohol dehydrogenase [acceptor] OS=Pseudomonas putida GN=alkJ PE=3
SV=1
Length = 552
Score = 70.1 bits (170), Expect = 4e-12, Method: Composition-based stats.
Identities = 36/78 (46%), Positives = 50/78 (64%), Gaps = 2/78 (2%)
Query: 29 SDEYWVCCVKHLTMQTHHQCGTCKMGPATDRTAVVDPRLRVYGIQGLRVIDASIMPVLPG 88
SD+ V ++ +H GTC+MG D +VVDP L+V G++ +RV+DASIMP L
Sbjct: 452 SDDEIVADIRSRAETIYHPVGTCRMG--KDPASVVDPCLQVRGLRNIRVVDASIMPNLVA 509
Query: 89 GHTVAPTYMIGEKGADMI 106
G+T APT MI E A++I
Sbjct: 510 GNTNAPTIMIAENAAEII 527
>sp|Q88AE7|BETA_PSESM Choline dehydrogenase OS=Pseudomonas syringae pv. tomato (strain
DC3000) GN=betA PE=3 SV=1
Length = 568
Score = 69.3 bits (168), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 39/79 (49%), Positives = 50/79 (63%), Gaps = 2/79 (2%)
Query: 29 SDEYWVCCVKHLTMQTHHQCGTCKMGPATDRTAVVDPRLRVYGIQGLRVIDASIMPVLPG 88
SDE V+ +H +CKMG TD AVVD + RV+G+Q LRV+DASIMP++
Sbjct: 460 SDEALDQFVREHAETAYHPSCSCKMG--TDEMAVVDGQGRVHGMQNLRVVDASIMPIITT 517
Query: 89 GHTVAPTYMIGEKGADMIK 107
G+ APT MI EK AD I+
Sbjct: 518 GNLNAPTIMIAEKIADKIR 536
>sp|C3K3D3|BETA_PSEFS Choline dehydrogenase OS=Pseudomonas fluorescens (strain SBW25)
GN=betA PE=3 SV=1
Length = 567
Score = 69.3 bits (168), Expect = 6e-12, Method: Composition-based stats.
Identities = 38/70 (54%), Positives = 47/70 (67%), Gaps = 3/70 (4%)
Query: 38 KHLTMQTHHQCGTCKMGPATDRTAVVDPRLRVYGIQGLRVIDASIMPVLPGGHTVAPTYM 97
+H H C +CKMG TD AVVD RV+G+QGLRV+DASIMP++ G+ APT M
Sbjct: 468 EHAETAFHPSC-SCKMG--TDEMAVVDGEGRVHGMQGLRVVDASIMPIITTGNLNAPTIM 524
Query: 98 IGEKGADMIK 107
I EK AD I+
Sbjct: 525 IAEKIADKIR 534
>sp|A7N2P9|BETA_VIBHB Choline dehydrogenase OS=Vibrio harveyi (strain ATCC BAA-1116 /
BB120) GN=betA PE=3 SV=1
Length = 569
Score = 69.3 bits (168), Expect = 6e-12, Method: Composition-based stats.
Identities = 36/82 (43%), Positives = 48/82 (58%)
Query: 25 LPFGSDEYWVCCVKHLTMQTHHQCGTCKMGPATDRTAVVDPRLRVYGIQGLRVIDASIMP 84
L SDE VK +H +CKMG D AV++ +V GI+GLRV+D+SI P
Sbjct: 449 LNITSDEAIGEWVKQNVESAYHPSCSCKMGSNDDPMAVLNEACQVRGIEGLRVVDSSIFP 508
Query: 85 VLPGGHTVAPTYMIGEKGADMI 106
+P G+ APT M+ E+ ADMI
Sbjct: 509 TIPNGNLNAPTIMVAERAADMI 530
>sp|Q48CM7|BETA_PSE14 Choline dehydrogenase OS=Pseudomonas syringae pv. phaseolicola
(strain 1448A / Race 6) GN=betA PE=3 SV=1
Length = 568
Score = 68.9 bits (167), Expect = 9e-12, Method: Composition-based stats.
Identities = 39/79 (49%), Positives = 50/79 (63%), Gaps = 2/79 (2%)
Query: 29 SDEYWVCCVKHLTMQTHHQCGTCKMGPATDRTAVVDPRLRVYGIQGLRVIDASIMPVLPG 88
SDE V+ +H +CKMG TD AVVD + RV+G+Q LRV+DASIMP++
Sbjct: 460 SDEALDQFVREHAETAYHPSCSCKMG--TDEMAVVDGQGRVHGLQSLRVVDASIMPIITT 517
Query: 89 GHTVAPTYMIGEKGADMIK 107
G+ APT MI EK AD I+
Sbjct: 518 GNLNAPTIMIAEKIADKIR 536
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.141 0.468
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,620,681
Number of Sequences: 539616
Number of extensions: 2011535
Number of successful extensions: 4337
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 4133
Number of HSP's gapped (non-prelim): 163
length of query: 120
length of database: 191,569,459
effective HSP length: 87
effective length of query: 33
effective length of database: 144,622,867
effective search space: 4772554611
effective search space used: 4772554611
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)