Query psy10421
Match_columns 120
No_of_seqs 197 out of 1088
Neff 6.2
Searched_HMMs 46136
Date Fri Aug 16 17:28:33 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10421.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10421hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1238|consensus 100.0 6.2E-35 1.3E-39 250.2 9.5 113 1-113 507-619 (623)
2 PF05199 GMC_oxred_C: GMC oxid 100.0 8.3E-31 1.8E-35 185.1 7.4 77 25-102 68-144 (144)
3 TIGR01810 betA choline dehydro 100.0 1.3E-29 2.8E-34 213.4 9.2 103 2-110 428-530 (532)
4 PRK02106 choline dehydrogenase 100.0 9.1E-29 2E-33 209.5 8.9 100 3-110 436-535 (560)
5 PLN02785 Protein HOTHEAD 99.9 4E-27 8.7E-32 202.0 9.6 79 27-111 503-581 (587)
6 COG2303 BetA Choline dehydroge 99.9 4E-25 8.6E-30 188.0 7.3 99 4-109 438-536 (542)
7 TIGR02462 pyranose_ox pyranose 99.8 9.7E-20 2.1E-24 155.7 7.5 67 43-110 477-543 (544)
8 COG1252 Ndh NADH dehydrogenase 93.5 0.25 5.4E-06 41.7 6.4 61 60-120 279-341 (405)
9 TIGR03169 Nterm_to_SelD pyridi 92.3 0.47 1E-05 37.9 6.2 59 61-119 260-319 (364)
10 PTZ00318 NADH dehydrogenase-li 90.0 1.1 2.4E-05 37.0 6.4 51 62-112 298-349 (424)
11 TIGR02734 crtI_fam phytoene de 81.8 5.4 0.00012 33.4 6.5 44 69-116 455-498 (502)
12 PF13807 GNVR: G-rich domain o 71.2 11 0.00023 24.2 4.4 35 71-105 37-71 (82)
13 PRK12844 3-ketosteroid-delta-1 69.0 15 0.00032 31.8 6.0 56 62-117 492-557 (557)
14 PRK04176 ribulose-1,5-biphosph 63.4 29 0.00062 27.0 6.1 68 43-112 186-256 (257)
15 KOG2495|consensus 62.9 18 0.0004 31.3 5.2 47 62-111 349-397 (491)
16 TIGR02733 desat_CrtD C-3',4' d 53.1 32 0.00069 28.7 5.1 35 70-108 456-490 (492)
17 TIGR02730 carot_isom carotene 43.4 46 0.001 27.9 4.6 36 70-109 456-491 (493)
18 PRK09754 phenylpropionate diox 41.9 35 0.00076 27.7 3.6 47 61-109 257-309 (396)
19 PRK07121 hypothetical protein; 40.5 64 0.0014 27.1 5.0 49 61-109 432-490 (492)
20 TIGR01292 TRX_reduct thioredox 40.0 46 0.001 25.0 3.8 43 61-108 255-298 (300)
21 PF11393 IcmL: Macrophage kill 37.5 34 0.00075 23.3 2.5 32 79-110 1-32 (108)
22 PRK08275 putative oxidoreducta 37.2 78 0.0017 27.2 5.1 56 44-108 347-402 (554)
23 PRK08274 tricarballylate dehyd 36.1 83 0.0018 26.0 5.0 51 61-111 402-462 (466)
24 TIGR00292 thiazole biosynthesi 35.2 66 0.0014 25.0 4.0 80 30-111 169-254 (254)
25 PRK12845 3-ketosteroid-delta-1 33.0 94 0.002 27.1 5.0 46 61-108 513-563 (564)
26 PRK12842 putative succinate de 32.6 1.4E+02 0.003 25.9 5.9 49 61-111 515-568 (574)
27 PRK12843 putative FAD-binding 32.4 68 0.0015 27.8 4.1 51 61-113 520-575 (578)
28 PLN00128 Succinate dehydrogena 32.3 1.3E+02 0.0028 26.7 5.8 48 63-110 405-466 (635)
29 PRK07057 sdhA succinate dehydr 32.0 1.2E+02 0.0026 26.5 5.5 49 61-109 363-425 (591)
30 PRK08205 sdhA succinate dehydr 31.2 1.3E+02 0.0028 26.2 5.6 49 61-109 358-417 (583)
31 PRK12837 3-ketosteroid-delta-1 30.8 1.4E+02 0.0031 25.4 5.7 46 61-108 460-510 (513)
32 PRK08958 sdhA succinate dehydr 28.8 1.3E+02 0.0028 26.3 5.2 49 61-109 359-422 (588)
33 PLN02661 Putative thiazole syn 26.7 98 0.0021 25.8 3.9 50 61-112 277-329 (357)
34 cd01445 TST_Repeats Thiosulfat 26.7 22 0.00047 25.1 0.0 52 28-82 78-133 (138)
35 TIGR01816 sdhA_forward succina 26.6 1.2E+02 0.0025 26.3 4.5 49 61-109 333-395 (565)
36 PRK12839 hypothetical protein; 26.4 2E+02 0.0043 25.1 5.9 48 61-110 516-568 (572)
37 PTZ00139 Succinate dehydrogena 24.2 2.1E+02 0.0046 25.2 5.7 49 62-110 383-445 (617)
38 TIGR03385 CoA_CoA_reduc CoA-di 23.9 1.3E+02 0.0028 24.5 4.1 46 62-108 252-303 (427)
39 PRK06134 putative FAD-binding 23.7 2.2E+02 0.0047 24.8 5.6 61 45-110 506-571 (581)
40 PRK05675 sdhA succinate dehydr 23.5 2.2E+02 0.0047 24.8 5.6 47 63-109 344-404 (570)
41 PF08410 DUF1737: Domain of un 23.2 47 0.001 20.4 1.1 25 96-120 15-39 (54)
42 PRK12835 3-ketosteroid-delta-1 21.8 2.9E+02 0.0062 24.2 6.0 49 61-111 518-571 (584)
43 PRK06481 fumarate reductase fl 21.7 2.6E+02 0.0056 23.7 5.6 50 62-111 446-504 (506)
No 1
>KOG1238|consensus
Probab=100.00 E-value=6.2e-35 Score=250.17 Aligned_cols=113 Identities=56% Similarity=1.039 Sum_probs=108.7
Q ss_pred CCCCccchhhccccccCCCCCCCCCCCCCHHHHHHHHHHhcccccccccCcccCCCCCCCceecCCCeEeccCCcEEecC
Q psy10421 1 MSETEPFQSIGSKLVDRPIPGCKHLPFGSDEYWVCCVKHLTMQTHHQCGTCKMGPATDRTAVVDPRLRVYGIQGLRVIDA 80 (120)
Q Consensus 1 ~~~t~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~~ir~~~~~~~H~~GT~~Mg~~~d~~~VVD~~~rV~Gv~nLrVvDa 80 (120)
|++|++|+++..++...+.|+|+..+..+|++|+||+|..+.|.||++|||+||+..|+++|||+++||||++|||||||
T Consensus 507 l~~s~af~~~~~r~~~~~~~~c~~~~~~sd~yw~c~~R~~~~TiyH~~GtckMGp~~D~~aVVD~~lrV~Gv~~LRVVDa 586 (623)
T KOG1238|consen 507 LSNSKAFQRFGARLWKKPVPGCDLLAFLSDAYWECFCRHTVVTIYHYSGTCKMGPSSDPTAVVDPQLRVHGVRGLRVVDA 586 (623)
T ss_pred HHcCHHHHHhcchhccccCCCcccccCCCHHHHHHHHHhccceeeccCCceEeCCccCCCcccCCcceeccccCceEeec
Confidence 46899999999999988899999888999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHhhCCC
Q psy10421 81 SIMPVLPGGHTVAPTYMIGEKGADMIKEDWLPG 113 (120)
Q Consensus 81 Sv~P~~~~~np~~t~~a~a~r~A~~i~~~~~~~ 113 (120)
||||.+|++||++++||||||+|++|+++|...
T Consensus 587 SimP~~psgN~nA~v~MIgek~ad~Ik~~~~~~ 619 (623)
T KOG1238|consen 587 SIMPESPSGNPNAPVMMIGEKAADMIKEEWLAN 619 (623)
T ss_pred cccCCCCCCCccHHHHHHHHHHHHHHHHHhhhc
Confidence 999999999999999999999999999998765
No 2
>PF05199 GMC_oxred_C: GMC oxidoreductase; InterPro: IPR007867 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. The function of this C-terminal conserved domain is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0055114 oxidation-reduction process; PDB: 3BG7_F 2IGM_D 3BLY_A 3BG6_H 3LSK_A 2IGO_A 3K4B_A 3K4L_B 2IGN_B 3K4M_H ....
Probab=99.97 E-value=8.3e-31 Score=185.06 Aligned_cols=77 Identities=39% Similarity=0.720 Sum_probs=67.9
Q ss_pred CCCCCHHHHHHHHHHhcccccccccCcccCCCCCCCceecCCCeEeccCCcEEecCCCCCCCCCCCCHHHHHHHHHHH
Q psy10421 25 LPFGSDEYWVCCVKHLTMQTHHQCGTCKMGPATDRTAVVDPRLRVYGIQGLRVIDASIMPVLPGGHTVAPTYMIGEKG 102 (120)
Q Consensus 25 ~~~~~d~~~~~~ir~~~~~~~H~~GT~~Mg~~~d~~~VVD~~~rV~Gv~nLrVvDaSv~P~~~~~np~~t~~a~a~r~ 102 (120)
....++++|++|+++...+.+|++|||+||.+++. +|||++|||||++||||+|+|+||+.+++||++|+||+|+|+
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~H~~Gt~~mG~~~~~-~VvD~~~rv~g~~nL~V~DaSv~P~~~~~np~~t~~ala~ra 144 (144)
T PF05199_consen 68 ASLDSDEDLECYIRQNVGTSWHPSGTCRMGPDPDT-SVVDPDLRVHGVRNLRVADASVFPTSPGANPTLTIMALAERA 144 (144)
T ss_dssp STTTCHHHHHHHHHHHGEECSS-BETT-BTSSTTT-TSB-TTSBBTTSBSEEE-SGGGSSS-SSSSSHHHHHHHHHHH
T ss_pred cccccchhhhhheeeccceecccccceeccccCCc-eeECCCCCeeeeeeEEECCCCcCCCCCCcCcHHHHHHHeeCC
Confidence 45678999999999999999999999999998764 999999999999999999999999999999999999999996
No 3
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=99.96 E-value=1.3e-29 Score=213.37 Aligned_cols=103 Identities=42% Similarity=0.675 Sum_probs=87.7
Q ss_pred CCCccchhhccccccCCCCCCCCCCCCCHHHHHHHHHHhcccccccccCcccCCCCCCCceecCCCeEeccCCcEEecCC
Q psy10421 2 SETEPFQSIGSKLVDRPIPGCKHLPFGSDEYWVCCVKHLTMQTHHQCGTCKMGPATDRTAVVDPRLRVYGIQGLRVIDAS 81 (120)
Q Consensus 2 ~~t~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~~ir~~~~~~~H~~GT~~Mg~~~d~~~VVD~~~rV~Gv~nLrVvDaS 81 (120)
+++++|+.+...+. .|+ ....+|++|++|+|+...+.+|++||||||++++++||||+++||||++||||||+|
T Consensus 428 ~~~~~~~~~~~~~~---~p~---~~~~~d~~~~~~ir~~~~~~~H~~GTcrMG~~~~~~~VVD~~~rV~Gv~nLrVvDaS 501 (532)
T TIGR01810 428 LKQKALDPYRGGEI---SPG---PEVQTDEEIDEFVRRHGETALHPCGTCKMGPASDEMSVVDPETRVHGMEGLRVVDAS 501 (532)
T ss_pred HcCcchhhcccccc---CCC---CCCCCHHHHHHHHhhhcccccccccceeCCCcccCCCccCCCCeEeccCCcEEeeec
Confidence 34555665543332 243 235789999999999999999999999999855668999999999999999999999
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHhh
Q psy10421 82 IMPVLPGGHTVAPTYMIGEKGADMIKEDW 110 (120)
Q Consensus 82 v~P~~~~~np~~t~~a~a~r~A~~i~~~~ 110 (120)
|||++|++||++|+||||||+|++|+++.
T Consensus 502 v~P~~~~~n~~~t~~aiaeraAd~I~~~~ 530 (532)
T TIGR01810 502 IMPRITNGNLNAPVIMMGEKAADIIRGKK 530 (532)
T ss_pred cCCCCCCCccHHHHHHHHHHHHHHHhccC
Confidence 99999999999999999999999998753
No 4
>PRK02106 choline dehydrogenase; Validated
Probab=99.95 E-value=9.1e-29 Score=209.49 Aligned_cols=100 Identities=41% Similarity=0.615 Sum_probs=86.4
Q ss_pred CCccchhhccccccCCCCCCCCCCCCCHHHHHHHHHHhcccccccccCcccCCCCCCCceecCCCeEeccCCcEEecCCC
Q psy10421 3 ETEPFQSIGSKLVDRPIPGCKHLPFGSDEYWVCCVKHLTMQTHHQCGTCKMGPATDRTAVVDPRLRVYGIQGLRVIDASI 82 (120)
Q Consensus 3 ~t~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~~ir~~~~~~~H~~GT~~Mg~~~d~~~VVD~~~rV~Gv~nLrVvDaSv 82 (120)
++++++.+...+. .|++ ...++++|++|+++...+.+|++||||||+ |++||||++|||||++||||+|+||
T Consensus 436 ~~~~~~~~~~~~~---~p~~---~~~~~~~~~~~i~~~~~~~~H~~GTcrMG~--d~~sVVD~~~rV~Gv~nLrVvDaSv 507 (560)
T PRK02106 436 AQPALDPYRGREI---SPGA---DVQTDEEIDAFVREHAETAYHPSCTCKMGT--DPMAVVDPEGRVHGVEGLRVVDASI 507 (560)
T ss_pred cChhhhhcccccc---CCCc---ccCCHHHHHHHHHhccCcCcccCCCeecCC--CCCeeECCCCEEeccCCeEEeeccc
Confidence 4455665544433 3542 347899999999999999999999999997 4479999999999999999999999
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHhh
Q psy10421 83 MPVLPGGHTVAPTYMIGEKGADMIKEDW 110 (120)
Q Consensus 83 ~P~~~~~np~~t~~a~a~r~A~~i~~~~ 110 (120)
||+.+++||++|+||+|||+|++|++++
T Consensus 508 ~P~~~~~np~~ti~aiaeraAd~I~~~~ 535 (560)
T PRK02106 508 MPTITNGNLNAPTIMIAEKAADLIRGRT 535 (560)
T ss_pred cCCCCCcchHHHHHHHHHHHHHHHhccC
Confidence 9999999999999999999999999876
No 5
>PLN02785 Protein HOTHEAD
Probab=99.94 E-value=4e-27 Score=202.02 Aligned_cols=79 Identities=29% Similarity=0.412 Sum_probs=75.4
Q ss_pred CCCHHHHHHHHHHhcccccccccCcccCCCCCCCceecCCCeEeccCCcEEecCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q psy10421 27 FGSDEYWVCCVKHLTMQTHHQCGTCKMGPATDRTAVVDPRLRVYGIQGLRVIDASIMPVLPGGHTVAPTYMIGEKGADMI 106 (120)
Q Consensus 27 ~~~d~~~~~~ir~~~~~~~H~~GT~~Mg~~~d~~~VVD~~~rV~Gv~nLrVvDaSv~P~~~~~np~~t~~a~a~r~A~~i 106 (120)
..+|++|++|+|+...+.||++|||+|| +|||+++||||++||||||+||||.+|++||++|+||||||+|++|
T Consensus 503 ~~~d~~l~~~ir~~~~t~~H~~GTc~MG------~VVD~~lrV~GV~~LRVvDaSi~P~~p~~np~atv~miaer~A~~I 576 (587)
T PLN02785 503 TNDTKSLEQFCKDTVITIWHYHGGCHVG------KVVDQNYKVLGVSRLRVIDGSTFDESPGTNPQATVMMMGRYMGVKI 576 (587)
T ss_pred CCCHHHHHHHHHHhcccccCCcccccCC------CeECCCCeEeccCCeEEeecccCCCCCCCccHHHHHHHHHHHHHHH
Confidence 3678999999999999999999999999 6999999999999999999999999999999999999999999999
Q ss_pred HHhhC
Q psy10421 107 KEDWL 111 (120)
Q Consensus 107 ~~~~~ 111 (120)
++++.
T Consensus 577 l~~~~ 581 (587)
T PLN02785 577 LRERL 581 (587)
T ss_pred HHHhh
Confidence 98764
No 6
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=99.91 E-value=4e-25 Score=188.01 Aligned_cols=99 Identities=32% Similarity=0.509 Sum_probs=83.0
Q ss_pred CccchhhccccccCCCCCCCCCCCCCHHHHHHHHHHhcccccccccCcccCCCCCCCceecCCCeEeccCCcEEecCCCC
Q psy10421 4 TEPFQSIGSKLVDRPIPGCKHLPFGSDEYWVCCVKHLTMQTHHQCGTCKMGPATDRTAVVDPRLRVYGIQGLRVIDASIM 83 (120)
Q Consensus 4 t~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~~ir~~~~~~~H~~GT~~Mg~~~d~~~VVD~~~rV~Gv~nLrVvDaSv~ 83 (120)
++.+..+...+. .|+ ....+++++..|++....+.+|++|||+||.++ ..+|+|++|||||++||||+|+|+|
T Consensus 438 ~~~~~~~~~~e~---~~~---~~~~~~~~~~~~~~~~~~t~~H~~GT~rMG~Dp-~~~V~d~~lrv~g~~nL~VvDaSvm 510 (542)
T COG2303 438 QPALDARRKAEL---APG---PRVTTDEDISAAIRFLARTAYHPMGTCRMGSDP-AAVVDDPYLRVHGLENLRVVDASVM 510 (542)
T ss_pred CccchhhHHHhh---cCC---CccccHHHHHHHHHhccCccccccccccCCCCc-hhhccccccccccCCCeEEeCcccC
Confidence 445555555443 354 346788899999999999999999999999532 2355559999999999999999999
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHh
Q psy10421 84 PVLPGGHTVAPTYMIGEKGADMIKED 109 (120)
Q Consensus 84 P~~~~~np~~t~~a~a~r~A~~i~~~ 109 (120)
|+++++||++|++|||+|+|++|+++
T Consensus 511 Pt~~~~Np~~ti~ala~raA~~I~~~ 536 (542)
T COG2303 511 PTSTGVNPNLTIIALAERAADHILGD 536 (542)
T ss_pred cCccCCCccHhHHHHHHHHHHHHhhc
Confidence 99999999999999999999999984
No 7
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=99.80 E-value=9.7e-20 Score=155.68 Aligned_cols=67 Identities=21% Similarity=0.295 Sum_probs=62.6
Q ss_pred cccccccCcccCCCCCCCceecCCCeEeccCCcEEecCCCCCCCCCCCCHHHHHHHHHHHHHHHHHhh
Q psy10421 43 QTHHQCGTCKMGPATDRTAVVDPRLRVYGIQGLRVIDASIMPVLPGGHTVAPTYMIGEKGADMIKEDW 110 (120)
Q Consensus 43 ~~~H~~GT~~Mg~~~d~~~VVD~~~rV~Gv~nLrVvDaSv~P~~~~~np~~t~~a~a~r~A~~i~~~~ 110 (120)
.++|++|||+||.++ .++|||+++||||++||||+|+|+||+.+++||++|+||+|+|+|+.|++++
T Consensus 477 ~~~H~~Gt~rMG~dp-~~sVvd~~~rv~g~~NL~V~d~s~~Pt~~~~nPtlTi~ala~r~a~~i~~~~ 543 (544)
T TIGR02462 477 LALHLAGTTRIGFDE-QTTVANTDSKVHNFKNLYVGGNGNIPTAFGANPTLTSMCYAIKSAEYIINNF 543 (544)
T ss_pred ccccCCCCeecCCCC-CCceECCCCcEeCCCCeEEeccCcCCCCCCCCcHHHHHHHHHHHHHHHHHhc
Confidence 378999999999753 5799999999999999999999999999999999999999999999998764
No 8
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=93.50 E-value=0.25 Score=41.68 Aligned_cols=61 Identities=21% Similarity=0.169 Sum_probs=43.0
Q ss_pred CceecCCCeEeccCCcEEe-cCCCCCCCCCCCCH-HHHHHHHHHHHHHHHHhhCCCCCCCCCC
Q psy10421 60 TAVVDPRLRVYGIQGLRVI-DASIMPVLPGGHTV-APTYMIGEKGADMIKEDWLPGYTPTFDF 120 (120)
Q Consensus 60 ~~VVD~~~rV~Gv~nLrVv-DaSv~P~~~~~np~-~t~~a~a~r~A~~i~~~~~~~~~~~~~~ 120 (120)
.=+||+++++.|.+++|++ |.+.++..=-..|+ --.+..|+.+|+.|.+.++-.+...|.|
T Consensus 279 rl~V~~~L~~~~~~~IFa~GD~A~~~~~~p~P~tAQ~A~Qqg~~~a~ni~~~l~g~~l~~f~y 341 (405)
T COG1252 279 RLVVNPTLQVPGHPDIFAAGDCAAVIDPRPVPPTAQAAHQQGEYAAKNIKARLKGKPLKPFKY 341 (405)
T ss_pred CEEeCCCcccCCCCCeEEEeccccCCCCCCCCChhHHHHHHHHHHHHHHHHHhcCCCCCCCcc
Confidence 3699999999999999999 99988875001122 2335567778888888887655555543
No 9
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=92.26 E-value=0.47 Score=37.86 Aligned_cols=59 Identities=14% Similarity=0.061 Sum_probs=41.0
Q ss_pred ceecCCCeEeccCCcEEe-cCCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhCCCCCCCCC
Q psy10421 61 AVVDPRLRVYGIQGLRVI-DASIMPVLPGGHTVAPTYMIGEKGADMIKEDWLPGYTPTFD 119 (120)
Q Consensus 61 ~VVD~~~rV~Gv~nLrVv-DaSv~P~~~~~np~~t~~a~a~r~A~~i~~~~~~~~~~~~~ 119 (120)
=.||..++..+.+|+|++ |.+.++..+........+.-|..+|+.|.+..+-...+.|+
T Consensus 260 i~vd~~l~~~~~~~Iya~GD~~~~~~~~~~~~~~~A~~~g~~~a~ni~~~l~g~~~~~~~ 319 (364)
T TIGR03169 260 LRVDPTLQSLSHPHVFAAGDCAVITDAPRPKAGVYAVRQAPILAANLRASLRGQPLRPFR 319 (364)
T ss_pred EEECCccccCCCCCEEEeeeeeecCCCCCCCchHHHHHhHHHHHHHHHHHhcCCCCCCCc
Confidence 367888898899999999 78777655443333445667788888887776555444443
No 10
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=90.01 E-value=1.1 Score=37.03 Aligned_cols=51 Identities=20% Similarity=0.092 Sum_probs=37.1
Q ss_pred eecCCCeEeccCCcEEe-cCCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhCC
Q psy10421 62 VVDPRLRVYGIQGLRVI-DASIMPVLPGGHTVAPTYMIGEKGADMIKEDWLP 112 (120)
Q Consensus 62 VVD~~~rV~Gv~nLrVv-DaSv~P~~~~~np~~t~~a~a~r~A~~i~~~~~~ 112 (120)
.||+.+|+.+++|+|++ |.+.++..+........+.-|..+|+.|.....-
T Consensus 298 ~Vd~~l~~~~~~~IfAiGD~a~~~~~~~~~~~~~A~~qg~~~A~ni~~~l~g 349 (424)
T PTZ00318 298 SVDDHLRVKPIPNVFALGDCAANEERPLPTLAQVASQQGVYLAKEFNNELKG 349 (424)
T ss_pred EeCCCcccCCCCCEEEEeccccCCCCCCCCchHHHHHHHHHHHHHHHHHhcC
Confidence 68999999999999988 8887764332223334566788888888877643
No 11
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=81.82 E-value=5.4 Score=33.37 Aligned_cols=44 Identities=23% Similarity=0.250 Sum_probs=31.9
Q ss_pred EeccCCcEEecCCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhCCCCCC
Q psy10421 69 VYGIQGLRVIDASIMPVLPGGHTVAPTYMIGEKGADMIKEDWLPGYTP 116 (120)
Q Consensus 69 V~Gv~nLrVvDaSv~P~~~~~np~~t~~a~a~r~A~~i~~~~~~~~~~ 116 (120)
...++|||.+.+|++|-.. ...++.=|..+|+.|+++.+..+.|
T Consensus 455 ~t~i~gLyl~G~~~~pG~G----v~g~~~sg~~~a~~il~~~~~~~~~ 498 (502)
T TIGR02734 455 DRKIDNLYLVGAGTHPGAG----VPGVLGSAKATAKLMLGDLAPGPEP 498 (502)
T ss_pred CCCCCCEEEeCCCCCCCCC----HHHHHHHHHHHHHHHHhhccCCCCC
Confidence 4579999999999988411 1234456778889999888776544
No 12
>PF13807 GNVR: G-rich domain on putative tyrosine kinase
Probab=71.19 E-value=11 Score=24.24 Aligned_cols=35 Identities=20% Similarity=0.283 Sum_probs=29.0
Q ss_pred ccCCcEEecCCCCCCCCCCCCHHHHHHHHHHHHHH
Q psy10421 71 GIQGLRVIDASIMPVLPGGHTVAPTYMIGEKGADM 105 (120)
Q Consensus 71 Gv~nLrVvDaSv~P~~~~~np~~t~~a~a~r~A~~ 105 (120)
...|++|+|..+.|..|.......++++|-=++-.
T Consensus 37 ~~~~~~ivd~A~~P~~P~~P~~~lil~l~~~~Gl~ 71 (82)
T PF13807_consen 37 NVSNVRIVDPAIVPDKPVSPKRALILALGLFLGLI 71 (82)
T ss_pred cCCCceeccccccCCCCCCCcHHHHHHHHHHHHHH
Confidence 45689999999999999999988888888655543
No 13
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=68.98 E-value=15 Score=31.77 Aligned_cols=56 Identities=29% Similarity=0.402 Sum_probs=39.8
Q ss_pred eecCCCeEec-----cCCcEEec---CCCCCC-CCC-CCCHHHHHHHHHHHHHHHHHhhCCCCCCC
Q psy10421 62 VVDPRLRVYG-----IQGLRVID---ASIMPV-LPG-GHTVAPTYMIGEKGADMIKEDWLPGYTPT 117 (120)
Q Consensus 62 VVD~~~rV~G-----v~nLrVvD---aSv~P~-~~~-~np~~t~~a~a~r~A~~i~~~~~~~~~~~ 117 (120)
.+|.++||.. ++|||.+. ++++-. -+. ++.....+..+..+++.+.+..+..++|+
T Consensus 492 ~in~~~qVld~~g~pIpGLYAAG~~~gg~~g~~Y~~~G~~l~~a~~~GriAg~~aa~~~~~~~~~~ 557 (557)
T PRK12844 492 LTDEHARVLREDGSVIPGLYATGNCTASVMGRTYPGAGASIGNSFVFGYIAALHAAGARSADPPPT 557 (557)
T ss_pred cCCCCceEECCCCCCccceeeccccccccccCCCCcCccchHHHHHHHHHHHHHHHhccCCCCCCC
Confidence 4455555554 79999996 344432 233 67889999999999999988887776663
No 14
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=63.44 E-value=29 Score=27.01 Aligned_cols=68 Identities=22% Similarity=0.184 Sum_probs=47.9
Q ss_pred cccccccCcccCCCCCCCceecCCCeEeccCCcEEecCCC--CCCCCCCCCHHHHHHH-HHHHHHHHHHhhCC
Q psy10421 43 QTHHQCGTCKMGPATDRTAVVDPRLRVYGIQGLRVIDASI--MPVLPGGHTVAPTYMI-GEKGADMIKEDWLP 112 (120)
Q Consensus 43 ~~~H~~GT~~Mg~~~d~~~VVD~~~rV~Gv~nLrVvDaSv--~P~~~~~np~~t~~a~-a~r~A~~i~~~~~~ 112 (120)
...-..|--.|-.......||+...+| ..||+|+.-++ .=-.|+.-|..--|.+ ++|+|+.|+++++.
T Consensus 186 ~~~~~~g~~~~~~~~~e~~v~~~t~~~--~~g~~~~gm~~~~~~~~~rmg~~fg~m~~sg~~~a~~~~~~~~~ 256 (257)
T PRK04176 186 LGIEVPGEKSMWAERGEKLVVENTGEV--YPGLYVAGMAANAVHGLPRMGPIFGGMLLSGKKVAELILEKLKK 256 (257)
T ss_pred cccccCCccccccCchHHHHHhcCCeE--cCCEEEeehhhhhhcCCCccCchhHhHHHhHHHHHHHHHHHhhc
Confidence 344445555555443345899999999 69999997554 3346677787776665 78999999988754
No 15
>KOG2495|consensus
Probab=62.91 E-value=18 Score=31.32 Aligned_cols=47 Identities=26% Similarity=0.158 Sum_probs=29.4
Q ss_pred eecCCCeEeccCCcEEe-cCCCCCCCCCCCCHHHHHH-HHHHHHHHHHHhhC
Q psy10421 62 VVDPRLRVYGIQGLRVI-DASIMPVLPGGHTVAPTYM-IGEKGADMIKEDWL 111 (120)
Q Consensus 62 VVD~~~rV~Gv~nLrVv-DaSv~P~~~~~np~~t~~a-~a~r~A~~i~~~~~ 111 (120)
.||..+||.|++|++-+ |.+.+|..+ |++-+.. =|+.+|+.+....+
T Consensus 349 ~vDE~LrV~G~~nvfAiGDca~~~~~~---~tAQVA~QqG~yLAk~fn~m~k 397 (491)
T KOG2495|consen 349 AVDEWLRVKGVKNVFAIGDCADQRGLK---PTAQVAEQQGAYLAKNFNKMGK 397 (491)
T ss_pred eeeceeeccCcCceEEeccccccccCc---cHHHHHHHHHHHHHHHHHHHhc
Confidence 89999999999999987 777454433 3333221 24445555544433
No 16
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=53.08 E-value=32 Score=28.74 Aligned_cols=35 Identities=23% Similarity=0.137 Sum_probs=24.4
Q ss_pred eccCCcEEecCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q psy10421 70 YGIQGLRVIDASIMPVLPGGHTVAPTYMIGEKGADMIKE 108 (120)
Q Consensus 70 ~Gv~nLrVvDaSv~P~~~~~np~~t~~a~a~r~A~~i~~ 108 (120)
..++|||.+.+|++|-. + ...++.=|..+|+.|++
T Consensus 456 t~i~gLyl~G~~~~pG~-G---v~g~~~sg~~~a~~i~~ 490 (492)
T TIGR02733 456 TPVKGLWLCGDSIHPGE-G---TAGVSYSALMVVRQILA 490 (492)
T ss_pred CCCCCeEEecCccCCCC-c---HHHHHHHHHHHHHHHhh
Confidence 47999999999999831 1 12344557777777764
No 17
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=43.43 E-value=46 Score=27.93 Aligned_cols=36 Identities=25% Similarity=0.319 Sum_probs=25.6
Q ss_pred eccCCcEEecCCCCCCCCCCCCHHHHHHHHHHHHHHHHHh
Q psy10421 70 YGIQGLRVIDASIMPVLPGGHTVAPTYMIGEKGADMIKED 109 (120)
Q Consensus 70 ~Gv~nLrVvDaSv~P~~~~~np~~t~~a~a~r~A~~i~~~ 109 (120)
..++|||.+.+|++|-. + ...++.=|..+|+.|.++
T Consensus 456 t~i~gLyl~G~~~~pG~-G---v~g~~~sG~~~a~~i~~~ 491 (493)
T TIGR02730 456 TAIPGLYCVGDSCFPGQ-G---LNAVAFSGFACAHRVAAD 491 (493)
T ss_pred CCCCCeEEecCcCCCCC-C---HHHHHHHHHHHHHHHHhh
Confidence 57999999999998831 1 123445577888888765
No 18
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=41.90 E-value=35 Score=27.72 Aligned_cols=47 Identities=15% Similarity=0.032 Sum_probs=32.2
Q ss_pred ceecCCCeEeccCCcEEe-cCCCCCCCCCCCC----H-HHHHHHHHHHHHHHHHh
Q psy10421 61 AVVDPRLRVYGIQGLRVI-DASIMPVLPGGHT----V-APTYMIGEKGADMIKED 109 (120)
Q Consensus 61 ~VVD~~~rV~Gv~nLrVv-DaSv~P~~~~~np----~-~t~~a~a~r~A~~i~~~ 109 (120)
=+||+.+|. ..+|+|.+ |...+|.. .+.+ + ...+.-|+.+|+.|...
T Consensus 257 i~vd~~~~t-s~~~IyA~GD~a~~~~~-~g~~~~~~~~~~A~~qg~~aa~ni~g~ 309 (396)
T PRK09754 257 IVIDEACRT-CDPAIFAGGDVAITRLD-NGALHRCESWENANNQAQIAAAAMLGL 309 (396)
T ss_pred EEECCCCcc-CCCCEEEccceEeeeCC-CCCEEEECcHHHHHHHHHHHHHHhcCC
Confidence 368999997 78999998 87777654 3322 2 34566677778777643
No 19
>PRK07121 hypothetical protein; Validated
Probab=40.47 E-value=64 Score=27.13 Aligned_cols=49 Identities=20% Similarity=0.230 Sum_probs=36.8
Q ss_pred ceecCC-CeEec-----cCCcEEec---CCCCCC-CCCCCCHHHHHHHHHHHHHHHHHh
Q psy10421 61 AVVDPR-LRVYG-----IQGLRVID---ASIMPV-LPGGHTVAPTYMIGEKGADMIKED 109 (120)
Q Consensus 61 ~VVD~~-~rV~G-----v~nLrVvD---aSv~P~-~~~~np~~t~~a~a~r~A~~i~~~ 109 (120)
=++|.+ +||.. ++|||.+. ++++-. -++++....++..+..+++.+.++
T Consensus 432 l~id~~~~qVld~~g~pI~GLYAaG~~~gg~~g~~y~~G~~l~~~~~~GriAg~~aa~~ 490 (492)
T PRK07121 432 LRVDEDTGEVLRADGAPIPGLYAAGRCASGIASNGYVSGLSLADCSFFGRRAGRHAAAR 490 (492)
T ss_pred eeECCCcceEECCCCCCcCceEecccccccCCCCCCCCccccchhHHHHHHHHHHHHhh
Confidence 467888 88886 89999996 345432 236888889999999999887654
No 20
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=39.95 E-value=46 Score=25.04 Aligned_cols=43 Identities=16% Similarity=0.054 Sum_probs=28.4
Q ss_pred ceecCCCeEeccCCcEEe-cCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q psy10421 61 AVVDPRLRVYGIQGLRVI-DASIMPVLPGGHTVAPTYMIGEKGADMIKE 108 (120)
Q Consensus 61 ~VVD~~~rV~Gv~nLrVv-DaSv~P~~~~~np~~t~~a~a~r~A~~i~~ 108 (120)
=.||+.++. +++|+|++ |++-.+ .......+.-|+.+|..|.+
T Consensus 255 i~v~~~~~t-~~~~vya~GD~~~~~----~~~~~~A~~~g~~aa~~i~~ 298 (300)
T TIGR01292 255 IVTDEGMRT-SVPGVFAAGDVRDKG----YRQAVTAAGDGCIAALSAER 298 (300)
T ss_pred EEECCCCcc-CCCCEEEeecccCcc----hhhhhhhhhhHHHHHHHHHh
Confidence 357777775 89999998 555421 12344566667788877764
No 21
>PF11393 IcmL: Macrophage killing protein with similarity to conjugation protein; InterPro: IPR021055 IcmL contains two amphipathic beta-sheet regions, required for the pore-forming ability which may be related to the transfer of this protein into a host cell membrane []. The icmL gene shows significant similarity to plasmid genes involved in conjugation however IcmL is thought to be required for macrophage killing. It is unknown whether conjugation plays a role in macrophage killing [].
Probab=37.53 E-value=34 Score=23.29 Aligned_cols=32 Identities=13% Similarity=0.283 Sum_probs=26.7
Q ss_pred cCCCCCCCCCCCCHHHHHHHHHHHHHHHHHhh
Q psy10421 79 DASIMPVLPGGHTVAPTYMIGEKGADMIKEDW 110 (120)
Q Consensus 79 DaSv~P~~~~~np~~t~~a~a~r~A~~i~~~~ 110 (120)
||.|+|..|-..|..+--.+...+.+.|.+..
T Consensus 1 ~gri~~l~pl~~P~~s~~~v~~wa~~ai~~~f 32 (108)
T PF11393_consen 1 NGRIIPLVPLDEPAVSDAEVLQWAQEAITAAF 32 (108)
T ss_pred CCceeecCCCCCcccCHHHHHHHHHHHHHHHh
Confidence 68899999999998888888888888887654
No 22
>PRK08275 putative oxidoreductase; Provisional
Probab=37.20 E-value=78 Score=27.24 Aligned_cols=56 Identities=11% Similarity=0.077 Sum_probs=36.8
Q ss_pred ccccccCcccCCCCCCCceecCCCeEeccCCcEEecCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q psy10421 44 THHQCGTCKMGPATDRTAVVDPRLRVYGIQGLRVIDASIMPVLPGGHTVAPTYMIGEKGADMIKE 108 (120)
Q Consensus 44 ~~H~~GT~~Mg~~~d~~~VVD~~~rV~Gv~nLrVvDaSv~P~~~~~np~~t~~a~a~r~A~~i~~ 108 (120)
..|.+|...||. =.||.+++. .++|||.+.-... ...|-.+..+..+.++++.+.+
T Consensus 347 ~~~~~g~~~~Gg-----i~~d~~~~t-~i~gl~a~Ge~~~---~~~~~~~~~~~~G~~a~~~~~~ 402 (554)
T PRK08275 347 EIGFCSGHSASG-----VWVNEKAET-TVPGLYAAGDMAS---VPHNYMLGAFTYGWFAGENAAE 402 (554)
T ss_pred CceeecccccCc-----EEECCCCcc-CCCCEEECcccCC---chhHHHHHHHHHHHHHHHHHHH
Confidence 355667677872 478988884 6999999844322 1145556666777777776644
No 23
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=36.09 E-value=83 Score=26.04 Aligned_cols=51 Identities=18% Similarity=0.133 Sum_probs=34.4
Q ss_pred ceecCCCeEec-----cCCcEEec---CC-CCCC-CCCCCCHHHHHHHHHHHHHHHHHhhC
Q psy10421 61 AVVDPRLRVYG-----IQGLRVID---AS-IMPV-LPGGHTVAPTYMIGEKGADMIKEDWL 111 (120)
Q Consensus 61 ~VVD~~~rV~G-----v~nLrVvD---aS-v~P~-~~~~np~~t~~a~a~r~A~~i~~~~~ 111 (120)
=.+|.++||.. ++|||.+. ++ ++-. -+++|.....+..+..+++.+.+..+
T Consensus 402 l~~d~~~~vl~~~g~~I~GLYAaGe~~gg~~~g~~y~~g~~l~~~~~~G~iag~~aa~~~~ 462 (466)
T PRK08274 402 LKVDEDARVRFADGRPSPNLFAAGEMMAGNVLGKGYPAGVGLTIGAVFGRIAGEEAARHAQ 462 (466)
T ss_pred EEECCCceEECCCCCCCCCceecccccccccccCCCccccchhhhhhhHHHHHHHHHHHhh
Confidence 35666677753 89999996 33 5532 23467777778888888888766543
No 24
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=35.21 E-value=66 Score=25.01 Aligned_cols=80 Identities=18% Similarity=0.156 Sum_probs=50.1
Q ss_pred HHHHHHHHHHhccc---ccccccCcccCCCCCCCceecCCCeEeccCCcEEecCCCC--CCCCCCCCHHHHHHH-HHHHH
Q psy10421 30 DEYWVCCVKHLTMQ---THHQCGTCKMGPATDRTAVVDPRLRVYGIQGLRVIDASIM--PVLPGGHTVAPTYMI-GEKGA 103 (120)
Q Consensus 30 d~~~~~~ir~~~~~---~~H~~GT~~Mg~~~d~~~VVD~~~rV~Gv~nLrVvDaSv~--P~~~~~np~~t~~a~-a~r~A 103 (120)
+..+..++.+.... ..+..|--.|-...-...||+...+| ++||+|+.-++- =-.|+.-|..--|.+ +.|+|
T Consensus 169 ~a~v~~~l~~~~~~~~~~~~~~g~~~~~~~~~e~~~~~~t~~~--~~g~~~~gm~~~~~~~~~rmgp~fg~m~~sg~~~a 246 (254)
T TIGR00292 169 DAEIVAVCAKKIVLEDQVPKLGGEKSMWAEVAEVAIHENTREV--VPNLYVAGMAVAAVHGLPRMGPIFGGMLLSGKHVA 246 (254)
T ss_pred CchHHHHHHHHcCcccCCcccCCchhhhhhhhHHHHHhccCcc--cCCEEEechhhhhhcCCCCcCchHHHHHHhhHHHH
Confidence 34455555554321 11333444443322234899999998 699999976543 345677787776665 78999
Q ss_pred HHHHHhhC
Q psy10421 104 DMIKEDWL 111 (120)
Q Consensus 104 ~~i~~~~~ 111 (120)
+.|+++++
T Consensus 247 ~~~~~~~~ 254 (254)
T TIGR00292 247 EQILEKLK 254 (254)
T ss_pred HHHHHHhC
Confidence 99988763
No 25
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=33.02 E-value=94 Score=27.07 Aligned_cols=46 Identities=26% Similarity=0.314 Sum_probs=31.5
Q ss_pred ceecCCCeEeccCCcEEec---CCCCC-CCCC-CCCHHHHHHHHHHHHHHHHH
Q psy10421 61 AVVDPRLRVYGIQGLRVID---ASIMP-VLPG-GHTVAPTYMIGEKGADMIKE 108 (120)
Q Consensus 61 ~VVD~~~rV~Gv~nLrVvD---aSv~P-~~~~-~np~~t~~a~a~r~A~~i~~ 108 (120)
-|+|.+++ =++|||.+. ++++- .-++ ++.....+..+..+++.+.+
T Consensus 513 qVLd~dg~--pI~GLYAaG~~~gg~~g~~Y~g~G~~lg~a~~fGriAg~~aa~ 563 (564)
T PRK12845 513 RVLREDGS--VIDGLYAIGNTAANAFGATYPGAGATIGQGLVYGYIAAQDAAA 563 (564)
T ss_pred eEECCCCC--CCCCeeEeeeeccccccCCCCCcchhhHHHHHHHHHHHHHHhc
Confidence 35555444 379999995 45553 3333 77888889999999887753
No 26
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=32.56 E-value=1.4e+02 Score=25.87 Aligned_cols=49 Identities=29% Similarity=0.289 Sum_probs=35.1
Q ss_pred ceecCCCeEeccCCcEEec---CCCCCC-CC-CCCCHHHHHHHHHHHHHHHHHhhC
Q psy10421 61 AVVDPRLRVYGIQGLRVID---ASIMPV-LP-GGHTVAPTYMIGEKGADMIKEDWL 111 (120)
Q Consensus 61 ~VVD~~~rV~Gv~nLrVvD---aSv~P~-~~-~~np~~t~~a~a~r~A~~i~~~~~ 111 (120)
-|+|.++++ ++|||.+. ++++-. -+ .++....++..+..+++.+.+..+
T Consensus 515 qVld~~g~p--IpGLYAaG~~~gg~~g~~y~~~G~~lg~a~~fGriAg~~aa~~~~ 568 (574)
T PRK12842 515 EVLDADGTP--IAGLYAVGNDRASIMGGNYPGAGITLGPIMTFGYITGRHLAGVAG 568 (574)
T ss_pred eEECCCCCC--cCCceecccccccCccCCCCCCcccHHHHHHHHHHHHHHHHhhhc
Confidence 577777663 69999997 344432 12 377888899999999999876654
No 27
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=32.44 E-value=68 Score=27.83 Aligned_cols=51 Identities=25% Similarity=0.221 Sum_probs=33.8
Q ss_pred ceecCCCeEeccCCcEEec---CCCCCCC--CCCCCHHHHHHHHHHHHHHHHHhhCCC
Q psy10421 61 AVVDPRLRVYGIQGLRVID---ASIMPVL--PGGHTVAPTYMIGEKGADMIKEDWLPG 113 (120)
Q Consensus 61 ~VVD~~~rV~Gv~nLrVvD---aSv~P~~--~~~np~~t~~a~a~r~A~~i~~~~~~~ 113 (120)
-|+|.++++ ++|||.+. ++++-.. ..++....++..+..+++.+.+..+.+
T Consensus 520 qVld~dg~p--IpGLYAaG~~~gg~~g~~y~~~G~~lg~a~~fGriAg~~aa~~~~~~ 575 (578)
T PRK12843 520 RVLNADGQP--ISGLYACGNDMASIMGGTYPGPGITLGPAIVFAYLAARHAAKRTLAR 575 (578)
T ss_pred eEECCCCCC--cCCceeccccccccccCCCCCcccchHHHHHHHHHHHHHHHHhhhcc
Confidence 466666553 79999985 3444221 235667778889999888887765543
No 28
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=32.31 E-value=1.3e+02 Score=26.68 Aligned_cols=48 Identities=15% Similarity=0.121 Sum_probs=33.5
Q ss_pred ecCCCeEe---------ccCCcEEecCCCCCC-----CCCCCCHHHHHHHHHHHHHHHHHhh
Q psy10421 63 VDPRLRVY---------GIQGLRVIDASIMPV-----LPGGHTVAPTYMIGEKGADMIKEDW 110 (120)
Q Consensus 63 VD~~~rV~---------Gv~nLrVvDaSv~P~-----~~~~np~~t~~a~a~r~A~~i~~~~ 110 (120)
||.+++|. .++|||.+.--..-. -.++|..+..+..+.++++.+.+..
T Consensus 405 vd~~g~vl~~~g~~~~t~IpGLYAaGE~a~~g~hGanRlggnsL~~a~vfGr~Ag~~aa~~~ 466 (635)
T PLN00128 405 TNYHGEVVTIKGDDPDAVVPGLMAAGEAACASVHGANRLGANSLLDIVVFGRACANRVAEIA 466 (635)
T ss_pred cCCCCeEecccCcccCCccCceEeeeccccccCCCCCCCchhhHHHHHHHHHHHHHHHHHhh
Confidence 77777773 499999995432211 1245788889999999999876543
No 29
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=31.96 E-value=1.2e+02 Score=26.48 Aligned_cols=49 Identities=12% Similarity=0.197 Sum_probs=34.2
Q ss_pred ce-ecCCCeEe--------ccCCcEEecCCCCCC-----CCCCCCHHHHHHHHHHHHHHHHHh
Q psy10421 61 AV-VDPRLRVY--------GIQGLRVIDASIMPV-----LPGGHTVAPTYMIGEKGADMIKED 109 (120)
Q Consensus 61 ~V-VD~~~rV~--------Gv~nLrVvDaSv~P~-----~~~~np~~t~~a~a~r~A~~i~~~ 109 (120)
|| +|.+++|. .++|||.+.-...-. -.++|..+..+..+.++++.+.+.
T Consensus 363 Gi~vd~~g~~~~~~~~~g~~IpGLyAaGE~a~~g~hGanrl~gnsl~~~~v~Gr~Ag~~aa~~ 425 (591)
T PRK07057 363 GIPTNIHGQVVGTSRDHKEPVNGFYAIGECSCVSVHGANRLGTNSLLDLVVFGRAAGNHIVDH 425 (591)
T ss_pred CeeECCCCcEeccccCCCCeeCCeEeCccccccCCCccccchhhHHHHHHHHHHHHHHHHHHH
Confidence 44 78888885 489999995432211 124577888888899998887654
No 30
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=31.25 E-value=1.3e+02 Score=26.15 Aligned_cols=49 Identities=12% Similarity=0.087 Sum_probs=33.0
Q ss_pred ce-ecCCCeE-----eccCCcEEecCCCCCC-----CCCCCCHHHHHHHHHHHHHHHHHh
Q psy10421 61 AV-VDPRLRV-----YGIQGLRVIDASIMPV-----LPGGHTVAPTYMIGEKGADMIKED 109 (120)
Q Consensus 61 ~V-VD~~~rV-----~Gv~nLrVvDaSv~P~-----~~~~np~~t~~a~a~r~A~~i~~~ 109 (120)
|+ +|.+++| ..++|||.+.--..-. -.++|..+..+..+.++++.+.+.
T Consensus 358 Gi~id~~~~v~~~~~t~IpGLyAaGE~a~~g~hGanrlggnsl~~~~v~G~~Ag~~aa~~ 417 (583)
T PRK08205 358 GIPTTVDGEVLRDNTTVVPGLYAAGECACVSVHGANRLGTNSLLDINVFGRRAGIAAAEY 417 (583)
T ss_pred CeeECCCceEecCCCCCcCCeeeccccccCCCCCCcCCchhhHHHHHHHHHHHHHHHHHH
Confidence 44 7888887 4699999995432211 124567777888888888877544
No 31
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=30.79 E-value=1.4e+02 Score=25.39 Aligned_cols=46 Identities=22% Similarity=0.358 Sum_probs=31.9
Q ss_pred ceecCCCeEeccCCcEEecC---CCC-CCCC-CCCCHHHHHHHHHHHHHHHHH
Q psy10421 61 AVVDPRLRVYGIQGLRVIDA---SIM-PVLP-GGHTVAPTYMIGEKGADMIKE 108 (120)
Q Consensus 61 ~VVD~~~rV~Gv~nLrVvDa---Sv~-P~~~-~~np~~t~~a~a~r~A~~i~~ 108 (120)
-|+|.++++ ++|||.+.- +++ ..-+ .+|.....+..+..+++.+..
T Consensus 460 qVl~~~g~p--IpGLYAaG~~~gg~~g~~Y~~~G~~~~~a~~fGriAg~~aa~ 510 (513)
T PRK12837 460 RVLDTDGRP--IPGLYAAGNTMAAVSGTTYPGGGNPIGASMLFSHLAALDMAG 510 (513)
T ss_pred eEECCCCCE--eCCceecccccccccccCCCCCccchHHHHHHHHHHHHHHhc
Confidence 466666554 699999943 455 2223 478888999999999988743
No 32
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=28.81 E-value=1.3e+02 Score=26.31 Aligned_cols=49 Identities=12% Similarity=0.165 Sum_probs=33.5
Q ss_pred ce-ecCCCeEe---------ccCCcEEecCCCC---CC--CCCCCCHHHHHHHHHHHHHHHHHh
Q psy10421 61 AV-VDPRLRVY---------GIQGLRVIDASIM---PV--LPGGHTVAPTYMIGEKGADMIKED 109 (120)
Q Consensus 61 ~V-VD~~~rV~---------Gv~nLrVvDaSv~---P~--~~~~np~~t~~a~a~r~A~~i~~~ 109 (120)
|+ +|.+++|. -++|||.+.--.. -- -.++|..+-.+..+.++++.+.+.
T Consensus 359 Gi~vd~~g~v~~~d~~~~~t~IpGLYAaGE~a~~g~hGanrlggnsl~~a~v~Gr~Ag~~aa~~ 422 (588)
T PRK08958 359 GIPTKVTGQALTVNEKGEDVVVPGLFAVGEIACVSVHGANRLGGNSLLDLVVFGRAAGLHLQES 422 (588)
T ss_pred CeeECCCceeeccccccCCCccCCeEecccccccCCCCCccchhhHHHHHHHHHHHHHHHHHHH
Confidence 44 78888873 4999999954221 11 234677788888899888877544
No 33
>PLN02661 Putative thiazole synthesis
Probab=26.71 E-value=98 Score=25.83 Aligned_cols=50 Identities=22% Similarity=0.230 Sum_probs=38.9
Q ss_pred ceecCCCeEeccCCcEEecCCC--CCCCCCCCCHHHHHHH-HHHHHHHHHHhhCC
Q psy10421 61 AVVDPRLRVYGIQGLRVIDASI--MPVLPGGHTVAPTYMI-GEKGADMIKEDWLP 112 (120)
Q Consensus 61 ~VVD~~~rV~Gv~nLrVvDaSv--~P~~~~~np~~t~~a~-a~r~A~~i~~~~~~ 112 (120)
.||+...+| +.||+|+.-++ .=-.|+..|..--|.+ +.|+|+.|+++++.
T Consensus 277 ~~v~~t~ev--~pgl~~~gm~~~~~~g~~rmgp~fg~m~~sg~k~a~~~~~~l~~ 329 (357)
T PLN02661 277 AIVRLTREV--VPGMIVTGMEVAEIDGSPRMGPTFGAMMISGQKAAHLALKALGL 329 (357)
T ss_pred HHHhccCcc--cCCEEEeccchhhhcCCCccCchhHhHHhhhHHHHHHHHHHHcc
Confidence 678888888 69999997554 4456778888777766 78999999988864
No 34
>cd01445 TST_Repeats Thiosulfate sulfurtransferases (TST) contain 2 copies of the Rhodanese Homology Domain. Only the second repeat contains the catalytically active Cys residue. The role of the 1st repeat is uncertain, but believed to be involved in protein interaction. This CD aligns the 1st and 2nd repeats.
Probab=26.67 E-value=22 Score=25.06 Aligned_cols=52 Identities=13% Similarity=0.174 Sum_probs=28.8
Q ss_pred CCHHHHHHHHHHhcc-cccccccCccc---CCCCCCCceecCCCeEeccCCcEEecCCC
Q psy10421 28 GSDEYWVCCVKHLTM-QTHHQCGTCKM---GPATDRTAVVDPRLRVYGIQGLRVIDASI 82 (120)
Q Consensus 28 ~~d~~~~~~ir~~~~-~~~H~~GT~~M---g~~~d~~~VVD~~~rV~Gv~nLrVvDaSv 82 (120)
.+.++++.++.+... ..-|..--|.= |.. .+.+=--++..|++|++|.|||.
T Consensus 78 p~~~~~~~~~~~~GI~~~~~vVvY~~~~~~g~~---A~r~~~~l~~~G~~~v~ildGG~ 133 (138)
T cd01445 78 PSEAEFAAMFEAKGIDLDKHLIATDGDDLGGFT---ACHIALAARLCGHPDVAILDGGF 133 (138)
T ss_pred CCHHHHHHHHHHcCCCCCCeEEEECCCCCcchH---HHHHHHHHHHcCCCCeEEeCCCH
Confidence 345677777766433 23344433320 000 01222247889999999999985
No 35
>TIGR01816 sdhA_forward succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup. Succinate dehydrogenase and fumarate reductase are homologous enzymes reversible in principle but favored under different circumstances. This model represents a narrowly defined clade of the succinate dehydrogenase flavoprotein subunit as found in mitochondria, in Rickettsia, in E. coli and other Proteobacteria, and in a few other lineages. However, this model excludes all known fumarate reductases. It also excludes putative succinate dehydrogenases that appear to diverged before the split between E. coli succinate dehydrogenase and fumarate reductase.
Probab=26.58 E-value=1.2e+02 Score=26.34 Aligned_cols=49 Identities=12% Similarity=0.112 Sum_probs=33.2
Q ss_pred ce-ecCCCeE--------eccCCcEEecCCCCCCCC-----CCCCHHHHHHHHHHHHHHHHHh
Q psy10421 61 AV-VDPRLRV--------YGIQGLRVIDASIMPVLP-----GGHTVAPTYMIGEKGADMIKED 109 (120)
Q Consensus 61 ~V-VD~~~rV--------~Gv~nLrVvDaSv~P~~~-----~~np~~t~~a~a~r~A~~i~~~ 109 (120)
|+ +|.+++| ..++|||-+.--..-..- ++|..+-++..|.++++.+.+.
T Consensus 333 Gi~id~~g~vl~~~~~~~t~IpGLyAaGE~a~~g~hGanrlggnsl~~a~vfGr~Ag~~aa~~ 395 (565)
T TIGR01816 333 GIPTNYHGQVLRDGNGNDQIVPGLYAAGEAACVSVHGANRLGTNSLLDLVVFGRAAGLSAAEY 395 (565)
T ss_pred CceeCCCceEcccccCCCCccCCeeecccccccCCCccccchhhHHHHHHHHHHHHHHHHHHh
Confidence 44 7888887 359999999543221112 3567778888888888887654
No 36
>PRK12839 hypothetical protein; Provisional
Probab=26.41 E-value=2e+02 Score=25.08 Aligned_cols=48 Identities=23% Similarity=0.275 Sum_probs=33.4
Q ss_pred ceecCCCeEeccCCcEEec---CCCCCC-C-CCCCCHHHHHHHHHHHHHHHHHhh
Q psy10421 61 AVVDPRLRVYGIQGLRVID---ASIMPV-L-PGGHTVAPTYMIGEKGADMIKEDW 110 (120)
Q Consensus 61 ~VVD~~~rV~Gv~nLrVvD---aSv~P~-~-~~~np~~t~~a~a~r~A~~i~~~~ 110 (120)
-|+|.+++ =++|||.+. +|++-. - .+++....++..+..+++.+.+..
T Consensus 516 qVLd~dg~--pIpGLYAAG~~~gg~~g~~Y~~~G~~lg~a~~fGriAg~~aA~~~ 568 (572)
T PRK12839 516 RVLRDDDT--PIDGLYAAGNDQASVMGGHYPSGGINLGPAMTFGYIAGRELAGST 568 (572)
T ss_pred eEECCCCC--CcCCceeccccccccccCCCCCcccchhHHHHHHHHHHHHHHhcc
Confidence 35555544 289999996 355532 1 257788899999999999887553
No 37
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=24.19 E-value=2.1e+02 Score=25.16 Aligned_cols=49 Identities=14% Similarity=0.146 Sum_probs=34.4
Q ss_pred eecCCCeEe---------ccCCcEEecCCC----CC-CCCCCCCHHHHHHHHHHHHHHHHHhh
Q psy10421 62 VVDPRLRVY---------GIQGLRVIDASI----MP-VLPGGHTVAPTYMIGEKGADMIKEDW 110 (120)
Q Consensus 62 VVD~~~rV~---------Gv~nLrVvDaSv----~P-~~~~~np~~t~~a~a~r~A~~i~~~~ 110 (120)
.+|.+++|. .++|||.+.--. .- .-.++|..+..+..|.++++.+.+..
T Consensus 383 ~vd~~~~v~d~~~~~~~t~I~GLyAaGE~a~~g~hGanrlggnsl~~~~vfGr~Ag~~aa~~~ 445 (617)
T PTZ00139 383 PTNWKTQVLTQRNGDDDKIVPGLLAAGEAACASVHGANRLGANSLLDIVVFGRAAANTVMEIL 445 (617)
T ss_pred EEcCCceeeccccccCCCccCCceecccccccCcCCCcccchhhHHHHHHHHHHHHHHHHHhh
Confidence 378888884 499999995422 11 11245788888999999999886543
No 38
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=23.85 E-value=1.3e+02 Score=24.55 Aligned_cols=46 Identities=9% Similarity=0.118 Sum_probs=28.5
Q ss_pred eecCCCeEeccCCcEEe-cCCCCCCCCCCC----CH-HHHHHHHHHHHHHHHH
Q psy10421 62 VVDPRLRVYGIQGLRVI-DASIMPVLPGGH----TV-APTYMIGEKGADMIKE 108 (120)
Q Consensus 62 VVD~~~rV~Gv~nLrVv-DaSv~P~~~~~n----p~-~t~~a~a~r~A~~i~~ 108 (120)
+||+.+|. ..+|+|++ |+.-+|....+. |. .....-|..+|+.|..
T Consensus 252 ~vd~~~~t-~~~~Vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~~a~ni~g 303 (427)
T TIGR03385 252 WVNEKFQT-SVPNIYAAGDVAESHNIITKKPAWVPLAWGANKMGRIAGENIAG 303 (427)
T ss_pred EECCCcEe-CCCCEEEeeeeEEeeeccCCCceeeechHHHHHHHHHHHHHhcC
Confidence 57888885 79999998 887776654332 21 2233445556666643
No 39
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=23.65 E-value=2.2e+02 Score=24.76 Aligned_cols=61 Identities=25% Similarity=0.250 Sum_probs=39.0
Q ss_pred cccccCcccCCCCCCCceecCCCeEeccCCcEEec---CCCCCC-C-CCCCCHHHHHHHHHHHHHHHHHhh
Q psy10421 45 HHQCGTCKMGPATDRTAVVDPRLRVYGIQGLRVID---ASIMPV-L-PGGHTVAPTYMIGEKGADMIKEDW 110 (120)
Q Consensus 45 ~H~~GT~~Mg~~~d~~~VVD~~~rV~Gv~nLrVvD---aSv~P~-~-~~~np~~t~~a~a~r~A~~i~~~~ 110 (120)
.+.+|..+.-.+ .-|+|.+++ =++|||.+. ++++-. - .+++....++..+..+++.+.+..
T Consensus 506 ~~T~GGl~id~~---~qVld~~g~--pIpGLYAaG~~~gg~~g~~y~~~G~~lg~a~~fGriAg~~aa~~~ 571 (581)
T PRK06134 506 LGTFAGLKTDAD---ARVLDQAGQ--PIPGLYAAGNDMASVMGGFYPSGGITLGPALTFGYIAGRHIAGAS 571 (581)
T ss_pred cccCCCccCCCC---CceECCCCC--CcCcceeccccccccccCCcCCcchhHHHHHHHHHHHHHHHhhcC
Confidence 344455544321 356777666 379999997 344421 1 246778888999999999887654
No 40
>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=23.46 E-value=2.2e+02 Score=24.77 Aligned_cols=47 Identities=13% Similarity=0.132 Sum_probs=33.0
Q ss_pred ecCCCeEe---------ccCCcEEecCCCC---CC--CCCCCCHHHHHHHHHHHHHHHHHh
Q psy10421 63 VDPRLRVY---------GIQGLRVIDASIM---PV--LPGGHTVAPTYMIGEKGADMIKED 109 (120)
Q Consensus 63 VD~~~rV~---------Gv~nLrVvDaSv~---P~--~~~~np~~t~~a~a~r~A~~i~~~ 109 (120)
+|.+++|. .++|||-+.--.. -- -.++|..+.++..+.++++.+.+.
T Consensus 344 vd~~g~~~~~d~~~~~t~IpGLYAaGE~a~~g~hGanrlggnsl~~a~v~Gr~Ag~~aa~~ 404 (570)
T PRK05675 344 TNIHGQAITQDANGNDQIIPGLFAVGEVACVSVHGANRLGGNSLLDLVVFGRAAGLHLEKA 404 (570)
T ss_pred cCCCCeeecccccccCCccCCeeecccccccCCCCccccccccHHHHHHHHHHHHHHHHHH
Confidence 67777773 5999999843221 11 235688899999999999887544
No 41
>PF08410 DUF1737: Domain of unknown function (DUF1737); InterPro: IPR013619 This domain of unknown function is found at the N terminus of bacterial and viral hypothetical proteins.
Probab=23.25 E-value=47 Score=20.38 Aligned_cols=25 Identities=20% Similarity=0.429 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHhhCCCCCCCCCC
Q psy10421 96 YMIGEKGADMIKEDWLPGYTPTFDF 120 (120)
Q Consensus 96 ~a~a~r~A~~i~~~~~~~~~~~~~~ 120 (120)
.++.+|+.+.|.+.|+.-..|.+.|
T Consensus 15 ~~fc~rVt~aL~~GW~l~GsP~~t~ 39 (54)
T PF08410_consen 15 SAFCHRVTEALNEGWQLYGSPTYTF 39 (54)
T ss_pred HHHHHHHHHHHHcCCEecCCceEEE
Confidence 4789999999999998887777654
No 42
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=21.84 E-value=2.9e+02 Score=24.15 Aligned_cols=49 Identities=27% Similarity=0.285 Sum_probs=32.8
Q ss_pred ceecCCCeEeccCCcEEec---CCCCCCC-C-CCCCHHHHHHHHHHHHHHHHHhhC
Q psy10421 61 AVVDPRLRVYGIQGLRVID---ASIMPVL-P-GGHTVAPTYMIGEKGADMIKEDWL 111 (120)
Q Consensus 61 ~VVD~~~rV~Gv~nLrVvD---aSv~P~~-~-~~np~~t~~a~a~r~A~~i~~~~~ 111 (120)
-|+|.++++ ++|||.+. ++++-.. + .++....++..+..+++.+.+..+
T Consensus 518 qVLd~~g~p--IpGLYAAGe~~Gg~~g~~Y~g~G~slg~a~~fGriAG~~aa~~~~ 571 (584)
T PRK12835 518 RVLREDDSV--IPGLYAVGNTSASVMGRSYAGAGATIGPAMTFGYVAARHAAAVVA 571 (584)
T ss_pred eEECCCCCC--ccceeeeeecccccccCCCCcCccchHHHHHHHHHHHHHHHHhhh
Confidence 455555553 68999996 4555322 2 256678888888888888876654
No 43
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=21.68 E-value=2.6e+02 Score=23.74 Aligned_cols=50 Identities=20% Similarity=0.227 Sum_probs=34.9
Q ss_pred eecCCCeEec-----cCCcEEecC---CCCC-CCCCCCCHHHHHHHHHHHHHHHHHhhC
Q psy10421 62 VVDPRLRVYG-----IQGLRVIDA---SIMP-VLPGGHTVAPTYMIGEKGADMIKEDWL 111 (120)
Q Consensus 62 VVD~~~rV~G-----v~nLrVvDa---Sv~P-~~~~~np~~t~~a~a~r~A~~i~~~~~ 111 (120)
.+|.++||.. ++|||.+.- +++- .-.++|....++..+..+++.+.+..+
T Consensus 446 ~in~~~qVld~~g~pI~GLYAaGe~~gg~~g~~~~~G~~l~~~~~~GriAg~~aa~~~~ 504 (506)
T PRK06481 446 KINTNTEVLKKDGSPITGLYAAGEVTGGLHGENRIGGNSVADIIIFGRQAGTQSAEFAK 504 (506)
T ss_pred EECCCceEEcCCCCEeCCeeeceeccccCCCCCCCchhhHHHHHHHHHHHHHHHHHhhh
Confidence 4666777643 899999843 4442 234577888888889988888866543
Done!