Query psy10421
Match_columns 120
No_of_seqs 197 out of 1088
Neff 6.2
Searched_HMMs 29240
Date Fri Aug 16 17:28:58 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10421.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/10421hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3q9t_A Choline dehydrogenase a 100.0 1.2E-31 4.2E-36 227.5 8.9 103 3-112 473-575 (577)
2 3fim_B ARYL-alcohol oxidase; A 100.0 1.2E-31 4E-36 227.1 8.4 103 2-109 463-565 (566)
3 3qvp_A Glucose oxidase; oxidor 100.0 5.7E-32 2E-36 230.0 6.3 106 2-111 475-580 (583)
4 3t37_A Probable dehydrogenase; 100.0 4.3E-31 1.5E-35 216.7 8.2 98 2-108 425-522 (526)
5 2jbv_A Choline oxidase; alcoho 100.0 8.1E-31 2.8E-35 219.8 7.4 105 2-112 428-532 (546)
6 1gpe_A Protein (glucose oxidas 100.0 8E-31 2.7E-35 221.8 6.2 107 2-112 479-585 (587)
7 1kdg_A CDH, cellobiose dehydro 100.0 7.3E-29 2.5E-33 206.3 7.4 83 28-111 462-544 (546)
8 1ju2_A HydroxynitrIle lyase; f 99.9 4.8E-28 1.7E-32 202.6 9.5 101 2-109 410-516 (536)
9 1n4w_A CHOD, cholesterol oxida 99.9 1.6E-24 5.5E-29 179.5 6.3 66 41-112 437-502 (504)
10 1coy_A Cholesterol oxidase; ox 99.9 4.4E-24 1.5E-28 177.2 6.1 64 42-111 443-506 (507)
11 3pl8_A Pyranose 2-oxidase; sub 99.9 2.2E-22 7.6E-27 171.5 7.7 72 43-114 545-617 (623)
12 2ywl_A Thioredoxin reductase r 86.4 1.7 5.9E-05 29.6 5.8 53 63-120 127-180 (180)
13 3hyw_A Sulfide-quinone reducta 84.9 1.6 5.4E-05 34.6 5.6 54 61-114 275-336 (430)
14 4g6h_A Rotenone-insensitive NA 83.1 2 6.9E-05 35.1 5.6 45 62-109 354-399 (502)
15 2zbw_A Thioredoxin reductase; 79.4 5.4 0.00019 29.5 6.5 56 62-120 270-326 (335)
16 3sx6_A Sulfide-quinone reducta 79.4 6.5 0.00022 30.9 7.3 54 61-114 286-347 (437)
17 3h8l_A NADH oxidase; membrane 78.3 6.3 0.00022 30.4 6.8 48 61-111 288-336 (409)
18 4dgk_A Phytoene dehydrogenase; 72.8 1.5 5.3E-05 34.7 1.9 45 66-114 451-495 (501)
19 3h28_A Sulfide-quinone reducta 69.8 13 0.00043 29.1 6.6 52 62-113 276-335 (430)
20 3f8d_A Thioredoxin reductase ( 67.4 11 0.00038 27.2 5.5 47 61-110 269-316 (323)
21 3lzw_A Ferredoxin--NADP reduct 63.7 20 0.00069 26.0 6.3 49 62-113 268-317 (332)
22 3vrd_B FCCB subunit, flavocyto 63.3 14 0.00048 28.2 5.6 48 62-112 275-325 (401)
23 3ab1_A Ferredoxin--NADP reduct 59.9 17 0.00059 27.1 5.5 50 61-113 280-330 (360)
24 1fl2_A Alkyl hydroperoxide red 50.8 30 0.001 25.0 5.4 45 61-110 259-304 (310)
25 3r9u_A Thioredoxin reductase; 44.8 39 0.0013 24.2 5.1 45 61-110 266-311 (315)
26 2q0l_A TRXR, thioredoxin reduc 42.1 47 0.0016 23.9 5.2 45 61-110 263-308 (311)
27 1vdc_A NTR, NADPH dependent th 39.5 52 0.0018 23.9 5.2 45 62-110 277-322 (333)
28 1trb_A Thioredoxin reductase; 37.9 62 0.0021 23.3 5.3 48 62-113 264-316 (320)
29 3cty_A Thioredoxin reductase; 37.0 72 0.0025 23.1 5.6 45 62-111 271-316 (319)
30 2q7v_A Thioredoxin reductase; 36.1 67 0.0023 23.3 5.3 45 61-110 266-311 (325)
31 3fbs_A Oxidoreductase; structu 36.0 57 0.0019 23.0 4.8 45 62-112 248-293 (297)
32 3itj_A Thioredoxin reductase 1 34.3 80 0.0027 22.7 5.4 44 64-112 292-336 (338)
33 1lqt_A FPRA; NADP+ derivative, 34.0 28 0.00097 27.7 3.1 45 62-110 341-386 (456)
34 1y0p_A Fumarate reductase flav 33.4 37 0.0013 27.7 3.7 49 62-110 511-568 (571)
35 1qo8_A Flavocytochrome C3 fuma 32.8 50 0.0017 26.9 4.4 50 62-111 506-564 (566)
36 2a87_A TRXR, TR, thioredoxin r 29.1 98 0.0033 22.6 5.2 43 62-108 270-313 (335)
37 4a9w_A Monooxygenase; baeyer-v 28.3 1E+02 0.0034 22.3 5.1 48 62-112 303-353 (357)
38 1d4d_A Flavocytochrome C fumar 26.4 55 0.0019 26.8 3.7 49 62-110 511-569 (572)
39 1hyu_A AHPF, alkyl hydroperoxi 24.0 1.2E+02 0.0042 24.3 5.3 45 61-110 470-515 (521)
40 1cjc_A Protein (adrenodoxin re 23.9 55 0.0019 26.1 3.1 46 62-111 349-395 (460)
41 2h88_A Succinate dehydrogenase 23.2 90 0.0031 26.2 4.4 51 61-111 370-433 (621)
42 3ntd_A FAD-dependent pyridine 21.5 83 0.0028 25.1 3.8 48 61-109 285-338 (565)
43 4at0_A 3-ketosteroid-delta4-5a 21.3 74 0.0025 25.4 3.4 46 61-108 459-508 (510)
44 2bc0_A NADH oxidase; flavoprot 21.0 97 0.0033 24.5 4.0 47 61-108 308-360 (490)
45 3fpz_A Thiazole biosynthetic e 20.8 15 0.00051 27.5 -0.8 50 61-111 272-325 (326)
46 1y56_A Hypothetical protein PH 20.4 1.6E+02 0.0055 23.4 5.2 42 62-110 335-376 (493)
No 1
>3q9t_A Choline dehydrogenase and related flavoproteins; glucose-methanol-choline oxidoreductase family, formate OXID formyl-FAD, oxidoreductase; HET: FAY; 2.24A {Aspergillus oryzae}
Probab=99.97 E-value=1.2e-31 Score=227.48 Aligned_cols=103 Identities=34% Similarity=0.515 Sum_probs=92.9
Q ss_pred CCccchhhccccccCCCCCCCCCCCCCHHHHHHHHHHhcccccccccCcccCCCCCCCceecCCCeEeccCCcEEecCCC
Q psy10421 3 ETEPFQSIGSKLVDRPIPGCKHLPFGSDEYWVCCVKHLTMQTHHQCGTCKMGPATDRTAVVDPRLRVYGIQGLRVIDASI 82 (120)
Q Consensus 3 ~t~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~~ir~~~~~~~H~~GT~~Mg~~~d~~~VVD~~~rV~Gv~nLrVvDaSv 82 (120)
++++|+++...+. .|+ ....+|++|++|+|+...+.||++|||+||++++ ++|||++|||||++||||||+||
T Consensus 473 ~~~~~~~~~~~e~---~p~---~~~~sd~~~~~~ir~~~~t~~H~~GTc~Mg~~~~-~~VVD~~lrV~Gv~~LrVvDaSv 545 (577)
T 3q9t_A 473 KGEGFKDLVESEY---PWE---MPLDSDKEMHRAVLDRCQTAFHPTGTARLSKNID-QGVVDPKLKVHGIKKLRVADASV 545 (577)
T ss_dssp HSTTGGGTEEEEE---SSC---CCTTCHHHHHHHHHHHCEECSCCBCTTCBCSSTT-TCSBCTTCBBTTCBSEEECSGGG
T ss_pred hChhhhhcccccc---CCC---CCcCCHHHHHHHHHhccccccccccceecCCCCC-CceECCCCeEeCCCCcEEeeccc
Confidence 5778888887665 344 3468999999999999999999999999998755 79999999999999999999999
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHhhCC
Q psy10421 83 MPVLPGGHTVAPTYMIGEKGADMIKEDWLP 112 (120)
Q Consensus 83 ~P~~~~~np~~t~~a~a~r~A~~i~~~~~~ 112 (120)
||+++++||++|+||||||+|++|+++++.
T Consensus 546 ~P~~~~~n~~a~~~~iaekaAd~I~~~~~~ 575 (577)
T 3q9t_A 546 IPIIPDCRIQNSVYAVGEKCADMIKAEHKD 575 (577)
T ss_dssp CSSCCSSCCHHHHHHHHHHHHHHHHHHCTT
T ss_pred ccCCCCCccHHHHHHHHHHHHHHHHhhhhh
Confidence 999999999999999999999999998853
No 2
>3fim_B ARYL-alcohol oxidase; AAO, lignin degradation, oxidoreductase, flavoprotein; HET: FAD; 2.55A {Pleurotus eryngii}
Probab=99.97 E-value=1.2e-31 Score=227.14 Aligned_cols=103 Identities=32% Similarity=0.548 Sum_probs=91.8
Q ss_pred CCCccchhhccccccCCCCCCCCCCCCCHHHHHHHHHHhcccccccccCcccCCCCCCCceecCCCeEeccCCcEEecCC
Q psy10421 2 SETEPFQSIGSKLVDRPIPGCKHLPFGSDEYWVCCVKHLTMQTHHQCGTCKMGPATDRTAVVDPRLRVYGIQGLRVIDAS 81 (120)
Q Consensus 2 ~~t~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~~ir~~~~~~~H~~GT~~Mg~~~d~~~VVD~~~rV~Gv~nLrVvDaS 81 (120)
+++++|+++...+. .|++ ....+|++|++|+|+...+.||++|||+||++++.++|||++|||||++||||||+|
T Consensus 463 ~~~~~~~~~~~~~~---~P~~--~~~~sd~~~~~~ir~~~~t~~H~~GTc~Mg~~~~~~~VVD~~lrV~Gv~~LrVvDaS 537 (566)
T 3fim_B 463 LSGQAWADFVIRPF---DPRL--RDPTDDAAIESYIRDNANTIFHPVGTASMSPRGASWGVVDPDLKVKGVDGLRIVDGS 537 (566)
T ss_dssp HTSGGGTTTEEEES---SGGG--SCTTCHHHHHHHHHHHCEECSCCBCTTCBCCTTCSSCSBCTTCBBTTCBSEEECSGG
T ss_pred HhCcccCCcccccc---CCCc--ccccchHHHHHHHhhcccccccccCccccCCcccCCccCCCCCeEccCCCcEEcccc
Confidence 56788998887665 3442 245799999999999999999999999999876645999999999999999999999
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHh
Q psy10421 82 IMPVLPGGHTVAPTYMIGEKGADMIKED 109 (120)
Q Consensus 82 v~P~~~~~np~~t~~a~a~r~A~~i~~~ 109 (120)
|||+++++||++|+||||||+|++|+++
T Consensus 538 v~P~~~~~n~~~~~~~iaekaAd~I~~~ 565 (566)
T 3fim_B 538 ILPFAPNAHTQGPIYLVGKQGADLIKAD 565 (566)
T ss_dssp GCCSCCSSCTHHHHHHHHHHHHHHHHHT
T ss_pred cCCCCCCcCcHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999999999999875
No 3
>3qvp_A Glucose oxidase; oxidoreductase; HET: NAG BMA MAN FAD; 1.20A {Aspergillus niger} PDB: 1gal_A* 1cf3_A* 3qvr_A*
Probab=99.97 E-value=5.7e-32 Score=229.97 Aligned_cols=106 Identities=34% Similarity=0.429 Sum_probs=94.6
Q ss_pred CCCccchhhccccccCCCCCCCCCCCCCHHHHHHHHHHhcccccccccCcccCCCCCCCceecCCCeEeccCCcEEecCC
Q psy10421 2 SETEPFQSIGSKLVDRPIPGCKHLPFGSDEYWVCCVKHLTMQTHHQCGTCKMGPATDRTAVVDPRLRVYGIQGLRVIDAS 81 (120)
Q Consensus 2 ~~t~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~~ir~~~~~~~H~~GT~~Mg~~~d~~~VVD~~~rV~Gv~nLrVvDaS 81 (120)
+++++|+++...+. .|+|......+|++|++|+|+...+.||++|||+||++++ ++|||++|||||++||||||+|
T Consensus 475 ~~~~~~~~~~~~~~---~pg~~~~~~~sd~~~~~~~r~~~~t~~H~~GTc~Mg~~~~-~~VVD~~lrV~Gv~~LrVvDaS 550 (583)
T 3qvp_A 475 SNSGAMQTYFAGET---IPGDNLAYDADLSAWTEYIPYHFRPNYHGVGTCSMMPKEM-GGVVDNAARVYGVQGLRVIDGS 550 (583)
T ss_dssp HTSTTHHHHEEEEE---ESGGGSCTTCCHHHHHHHGGGSCEECSCCBCTTCBSCGGG-TCSBCTTCBBTTCBSEEECSTT
T ss_pred HhCcchhhcccccc---CCCcccccCCCHHHHHHHHHhccCCCcCCCCceeCCCCCC-CceECCCCeEecCCCeEEeecc
Confidence 56788998886654 4666433457999999999999999999999999998654 6999999999999999999999
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHhhC
Q psy10421 82 IMPVLPGGHTVAPTYMIGEKGADMIKEDWL 111 (120)
Q Consensus 82 v~P~~~~~np~~t~~a~a~r~A~~i~~~~~ 111 (120)
|||+++++||++|+||||||+|++|++++.
T Consensus 551 v~P~~~~~n~~~t~~aiaeraAd~I~~~~~ 580 (583)
T 3qvp_A 551 IPPTQMSSHVMTVFYAMALKISDAILEDYA 580 (583)
T ss_dssp CCSSCCSSCSHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCcCcHHHHHHHHHHHHHHHHHhhh
Confidence 999999999999999999999999999874
No 4
>3t37_A Probable dehydrogenase; BET alpha beta fold, ADP binding, oxidoreductase; HET: FAD; 2.19A {Mesorhizobium loti}
Probab=99.97 E-value=4.3e-31 Score=216.67 Aligned_cols=98 Identities=32% Similarity=0.475 Sum_probs=86.4
Q ss_pred CCCccchhhccccccCCCCCCCCCCCCCHHHHHHHHHHhcccccccccCcccCCCCCCCceecCCCeEeccCCcEEecCC
Q psy10421 2 SETEPFQSIGSKLVDRPIPGCKHLPFGSDEYWVCCVKHLTMQTHHQCGTCKMGPATDRTAVVDPRLRVYGIQGLRVIDAS 81 (120)
Q Consensus 2 ~~t~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~~ir~~~~~~~H~~GT~~Mg~~~d~~~VVD~~~rV~Gv~nLrVvDaS 81 (120)
+++++|+.+...+. .|++ ..++++|++|+|+...+.||++|||+||.+ ++||||++|||||++||||||||
T Consensus 425 ~~~~~~~~~~~~~~---~pg~----~~~~~~~~~~ir~~~~t~~H~~GTcrMG~d--~~sVVD~~~rV~Gv~nL~VvDaS 495 (526)
T 3t37_A 425 GHRDELAGWREREL---LPGT----PNSAAEMDDFIARSVITHHHPCGTCRMGKD--PDAVVDANLRLKALDNLFVVDAS 495 (526)
T ss_dssp HTCGGGTTTEEEEC---SSCC----CCSHHHHHHHHHHHEEECSCCBCTTCBCSS--TTCSBCTTCBBTTCSSEEECSGG
T ss_pred HcChhhhhcccccc---CCCC----CCCHHHHHHHHHhcCccCcccCccccCCCC--CCccCCCCCEEcCCCCeEEEEcC
Confidence 35677777776665 4654 368999999999999999999999999964 47999999999999999999999
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHH
Q psy10421 82 IMPVLPGGHTVAPTYMIGEKGADMIKE 108 (120)
Q Consensus 82 v~P~~~~~np~~t~~a~a~r~A~~i~~ 108 (120)
|||+++++||++|+||||||+||+.-.
T Consensus 496 v~P~~~~~np~~ti~aiAEkaAd~~~~ 522 (526)
T 3t37_A 496 IMPNLTAGPIHAAVLAIAETFARQYHH 522 (526)
T ss_dssp GCSSCCSSCCHHHHHHHHHHHHHHHHH
T ss_pred cccCCcChHHHHHHHHHHHHHHHHhhc
Confidence 999999999999999999999998643
No 5
>2jbv_A Choline oxidase; alcohol oxidation, flavoenyzme oxidase, covalently linked FAD, C4A-adduct, flavoprotein, oxidoreductase; HET: FAO; 1.86A {Arthrobacter globiformis} PDB: 3nne_A* 3ljp_A*
Probab=99.96 E-value=8.1e-31 Score=219.78 Aligned_cols=105 Identities=30% Similarity=0.447 Sum_probs=87.1
Q ss_pred CCCccchhhccccccCCCCCCCCCCCCCHHHHHHHHHHhcccccccccCcccCCCCCCCceecCCCeEeccCCcEEecCC
Q psy10421 2 SETEPFQSIGSKLVDRPIPGCKHLPFGSDEYWVCCVKHLTMQTHHQCGTCKMGPATDRTAVVDPRLRVYGIQGLRVIDAS 81 (120)
Q Consensus 2 ~~t~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~~ir~~~~~~~H~~GT~~Mg~~~d~~~VVD~~~rV~Gv~nLrVvDaS 81 (120)
+++++|+++...+. .|++ ...+|++|++|+|+...+.+|++|||+||++.|.++|||++|||||++||||||+|
T Consensus 428 ~~~~~~~~~~~~~~---~p~~---~~~sd~~~~~~ir~~~~~~~H~~GTcrMG~~~d~~~VVD~~lrV~Gv~nLrVvDaS 501 (546)
T 2jbv_A 428 AAQPAMAEWTGREL---SPGV---EAQTDEELQDYIRKTHNTVYHPVGTVRMGAVEDEMSPLDPELRVKGVTGLRVADAS 501 (546)
T ss_dssp HTSGGGTTTEEEEE---ESCT---TCCSHHHHHHHHHHHCEECSCCBCTTCBCCTTCTTCSBCTTCBBTTSBSEEECSGG
T ss_pred HcCcchhhcccccc---cCCC---CCCCHHHHHHHHHhcCCcccccccccccCCCCCCCceECCCCEEECCCCeEEeecc
Confidence 45667777765544 3552 46799999999999999999999999999744568999999999999999999999
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHhhCC
Q psy10421 82 IMPVLPGGHTVAPTYMIGEKGADMIKEDWLP 112 (120)
Q Consensus 82 v~P~~~~~np~~t~~a~a~r~A~~i~~~~~~ 112 (120)
|||+++++||++|+||||||+|++|++++..
T Consensus 502 v~P~~~~~np~~ti~aiAeraAd~I~~~~~~ 532 (546)
T 2jbv_A 502 VMPEHVTVNPNITVMMIGERCADLIRSARAG 532 (546)
T ss_dssp GCSSCCSSCCHHHHHHHHHHHHHHC------
T ss_pred cCCCCCCcchHHHHHHHHHHHHHHHHhhccc
Confidence 9999999999999999999999999988753
No 6
>1gpe_A Protein (glucose oxidase); oxidoreductase(flavoprotein); HET: NAG BMA MAN FAD; 1.80A {Penicillium amagasakiense} SCOP: c.3.1.2 d.16.1.1
Probab=99.96 E-value=8e-31 Score=221.84 Aligned_cols=107 Identities=28% Similarity=0.385 Sum_probs=91.5
Q ss_pred CCCccchhhccccccCCCCCCCCCCCCCHHHHHHHHHHhcccccccccCcccCCCCCCCceecCCCeEeccCCcEEecCC
Q psy10421 2 SETEPFQSIGSKLVDRPIPGCKHLPFGSDEYWVCCVKHLTMQTHHQCGTCKMGPATDRTAVVDPRLRVYGIQGLRVIDAS 81 (120)
Q Consensus 2 ~~t~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~~ir~~~~~~~H~~GT~~Mg~~~d~~~VVD~~~rV~Gv~nLrVvDaS 81 (120)
+++++|+++...+. .|++......+|++|++|+|+...+.+|++|||+||+++ .+||||++|||||++||||||+|
T Consensus 479 ~~~~~~~~~~~~~~---~pg~~~~~~~sd~~~~~~ir~~~~t~~H~~GTcrMG~~~-~~sVVD~~lrV~Gv~nLrVvDaS 554 (587)
T 1gpe_A 479 TSQGAMKEYFAGET---LPGYNLVQNATLSQWSDYVLQNFRPNWHAVSSCSMMSRE-LGGVVDATAKVYGTQGLRVIDGS 554 (587)
T ss_dssp HTSTTHHHHEEEEE---ESGGGSCTTCCHHHHHHHHHHSCEECSCCBCTTCBSCGG-GTCSBCTTCBBTTCBSEEECSTT
T ss_pred HcCcchhhhccccc---CCCccccCCCCHHHHHHHHHHhcCcccCccCccccCCCC-CCceECCCCEEECCCCcEEeeec
Confidence 45677887776544 344321234799999999999999999999999999865 36999999999999999999999
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHhhCC
Q psy10421 82 IMPVLPGGHTVAPTYMIGEKGADMIKEDWLP 112 (120)
Q Consensus 82 v~P~~~~~np~~t~~a~a~r~A~~i~~~~~~ 112 (120)
|||+++++||++|+||||||+|++|+++++.
T Consensus 555 v~P~~~~~Np~~ti~aiAeraAd~I~~~~~~ 585 (587)
T 1gpe_A 555 IPPTQVSSHVMTIFYGMALKVADAILDDYAK 585 (587)
T ss_dssp CCSSCCSSCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCcchHHHHHHHHHHHHHHHHhhhhc
Confidence 9999999999999999999999999988753
No 7
>1kdg_A CDH, cellobiose dehydrogenase; GMC oxidoreductase, PHBH fold, alpha/beta structure, rossman 6-hydroxylated FAD, oxidoreductase; HET: NAG MAN 6FA EMT; 1.50A {Phanerochaete chrysosporium} SCOP: c.3.1.2 d.16.1.1 PDB: 1naa_A*
Probab=99.95 E-value=7.3e-29 Score=206.29 Aligned_cols=83 Identities=28% Similarity=0.402 Sum_probs=77.9
Q ss_pred CCHHHHHHHHHHhcccccccccCcccCCCCCCCceecCCCeEeccCCcEEecCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q psy10421 28 GSDEYWVCCVKHLTMQTHHQCGTCKMGPATDRTAVVDPRLRVYGIQGLRVIDASIMPVLPGGHTVAPTYMIGEKGADMIK 107 (120)
Q Consensus 28 ~~d~~~~~~ir~~~~~~~H~~GT~~Mg~~~d~~~VVD~~~rV~Gv~nLrVvDaSv~P~~~~~np~~t~~a~a~r~A~~i~ 107 (120)
.+++++.+++++...+.+|++|||+||+++ .++|||++|||||++|||||||||||+++++||++|+||||||+|++|+
T Consensus 462 ~~~~~~~~~~~~~~~t~~H~~GTcrMG~~~-~~~VVD~~lrV~Gv~nLrVvDaSv~P~~~~~np~~ti~aiAeraAd~I~ 540 (546)
T 1kdg_A 462 QTLEEYVDAYDPATMNSNHWVSSTTIGSSP-QSAVVDSNVKVFGTNNLFIVDAGIIPHLPTGNPQGTLMSAAEQAAAKIL 540 (546)
T ss_dssp SCHHHHHHHSCGGGGCCSCCBCTTCBCSCT-TTCSBCTTCBBTTCSSEEECSGGGCSSCCSSCSHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhcCcccccccceecCCCC-CCeeECCCCeEccCCCcEEeEecccCCCCCccHHHHHHHHHHHHHHHHH
Confidence 688999999999999999999999999864 5799999999999999999999999999999999999999999999999
Q ss_pred HhhC
Q psy10421 108 EDWL 111 (120)
Q Consensus 108 ~~~~ 111 (120)
+++.
T Consensus 541 ~~~~ 544 (546)
T 1kdg_A 541 ALAG 544 (546)
T ss_dssp HSTT
T ss_pred hhcC
Confidence 8763
No 8
>1ju2_A HydroxynitrIle lyase; flavin, GMC oxidoreductase, almond, cyanogenesis; HET: NAG NDG FUC BMA MAN FAD; 1.47A {Prunus dulcis} SCOP: c.3.1.2 d.16.1.1 PDB: 3gdp_A* 3gdn_A*
Probab=99.95 E-value=4.8e-28 Score=202.56 Aligned_cols=101 Identities=24% Similarity=0.344 Sum_probs=83.2
Q ss_pred CCCccchhhccccccCCCCCCCC------CCCCCHHHHHHHHHHhcccccccccCcccCCCCCCCceecCCCeEeccCCc
Q psy10421 2 SETEPFQSIGSKLVDRPIPGCKH------LPFGSDEYWVCCVKHLTMQTHHQCGTCKMGPATDRTAVVDPRLRVYGIQGL 75 (120)
Q Consensus 2 ~~t~~~~~~~~~~~~~~~p~~~~------~~~~~d~~~~~~ir~~~~~~~H~~GT~~Mg~~~d~~~VVD~~~rV~Gv~nL 75 (120)
+++++|+++...+.. ..|++.. ....+|++|++|+|+...+.+|++|||+|| +|||++|||||++||
T Consensus 410 ~~~~~~~~~~~~~~~-~~p~~~~~~~~~p~~~~~d~~~~~~ir~~~~t~~H~~GTcrMG------~VVD~~lrV~Gv~nL 482 (536)
T 1ju2_A 410 LSTDALKPYKVEDLP-GVEGFNILGIPLPKDQTDDAAFETFCRESVASYWHYHGGCLVG------KVLDGDFRVTGINAL 482 (536)
T ss_dssp HTSGGGGGGCSSCCS-TTCSCCBSSSCCCSCTTCHHHHHHHHHHHCEECSCCEESSCBT------TTBCTTSBBTTCBTE
T ss_pred HcCccchhhhccccc-cCCCccccccCCCcccCCHHHHHHHHHhccCccccCcCccCCc------cEECCCCeEcCCCCe
Confidence 466778887765421 1233210 124689999999999999999999999999 699999999999999
Q ss_pred EEecCCCCCCCCCCCCHHHHHHHHHHHHHHHHHh
Q psy10421 76 RVIDASIMPVLPGGHTVAPTYMIGEKGADMIKED 109 (120)
Q Consensus 76 rVvDaSv~P~~~~~np~~t~~a~a~r~A~~i~~~ 109 (120)
||||+||||+++++||++|+||||||+|+.|+++
T Consensus 483 rVvDaSv~P~~~~~np~~t~~aiAer~A~~ii~~ 516 (536)
T 1ju2_A 483 RVVDGSTFPYTPASHPQGFYLMLGRYVGIKILQE 516 (536)
T ss_dssp EECSGGGCSSCSSSSCHHHHHHHHHHHHHHHHHH
T ss_pred EEeecccCCCCCCcchHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999988766543
No 9
>1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism, oxidoreductase, atomic RESO; HET: FAD; 0.92A {Streptomyces SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1b4v_A* 1n1p_A* 1n4u_A* 1n4v_A* 1mxt_A* 2gew_A* 1b8s_A* 3gyi_A* 1cc2_A* 3gyj_A* 1ijh_A* 1cbo_A* 3b3r_A* 3b6d_A* 3cnj_A*
Probab=99.90 E-value=1.6e-24 Score=179.51 Aligned_cols=66 Identities=24% Similarity=0.322 Sum_probs=62.0
Q ss_pred cccccccccCcccCCCCCCCceecCCCeEeccCCcEEecCCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhCC
Q psy10421 41 TMQTHHQCGTCKMGPATDRTAVVDPRLRVYGIQGLRVIDASIMPVLPGGHTVAPTYMIGEKGADMIKEDWLP 112 (120)
Q Consensus 41 ~~~~~H~~GT~~Mg~~~d~~~VVD~~~rV~Gv~nLrVvDaSv~P~~~~~np~~t~~a~a~r~A~~i~~~~~~ 112 (120)
..+.+|++|||+|| +|||++|||||++||||||+||||+++++||++|+||||||+|++|++++..
T Consensus 437 ~~~~~H~~GTcrMG------~VVD~~~rV~Gv~nLrVvDaSv~P~~~~~np~~ti~aiAeraAd~I~~~~~~ 502 (504)
T 1n4w_A 437 DDFCYHPLGGCVLG------KATDDYGRVAGYKNLYVTDGSLIPGSVGVNPFVTITALAERNVERIIKQDVT 502 (504)
T ss_dssp CSEESSCBCSSCTT------TTBCTTSBBTTCSSEEECSGGGSCSCCSSCSHHHHHHHHHHHHHHHHHHHC-
T ss_pred cCccccccCCceee------eEECCCCeEeccCCeEEeeccccCCCCCcChHHHHHHHHHHHHHHHHHhhcc
Confidence 35789999999999 7999999999999999999999999999999999999999999999988753
No 10
>1coy_A Cholesterol oxidase; oxidoreductase(oxygen receptor); HET: AND FAD; 1.80A {Brevibacterium sterolicum} SCOP: c.3.1.2 d.16.1.1 PDB: 3cox_A*
Probab=99.89 E-value=4.4e-24 Score=177.16 Aligned_cols=64 Identities=23% Similarity=0.232 Sum_probs=60.6
Q ss_pred ccccccccCcccCCCCCCCceecCCCeEeccCCcEEecCCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhC
Q psy10421 42 MQTHHQCGTCKMGPATDRTAVVDPRLRVYGIQGLRVIDASIMPVLPGGHTVAPTYMIGEKGADMIKEDWL 111 (120)
Q Consensus 42 ~~~~H~~GT~~Mg~~~d~~~VVD~~~rV~Gv~nLrVvDaSv~P~~~~~np~~t~~a~a~r~A~~i~~~~~ 111 (120)
.+.+|++|||+|| +|||++|||||++||||||+||||+++++||++|+||||||+|++|+++..
T Consensus 443 ~~~~H~~GTcrMG------~VVD~~~rV~Gv~nLrVvDaSv~P~~~~~Np~~ti~alAeraAd~I~~~~~ 506 (507)
T 1coy_A 443 DFTYHPLGGVLLN------KATDNFGRLPEYPGLYVVDGSLVPGNVGVNPFVTITALAERNMDKIISSDI 506 (507)
T ss_dssp SEESCCBCSSCTT------TTSCTTSBCTTSTTEEECSGGGSCSCCSSCSHHHHHHHHHHHHHHHHHHTC
T ss_pred cccccccCCcchh------heECCCCeEeccCCeEEeechhccCCCCcChHHHHHHHHHHHHHHHHHHhc
Confidence 5689999999999 499999999999999999999999999999999999999999999998753
No 11
>3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer, GMC oxidoredu PHBH fold, rossmann domain, oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A* 2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A* 3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A* 3fdy_A* ...
Probab=99.86 E-value=2.2e-22 Score=171.48 Aligned_cols=72 Identities=21% Similarity=0.340 Sum_probs=66.9
Q ss_pred cccccccCcccCCCCCCCcee-cCCCeEeccCCcEEecCCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhCCCC
Q psy10421 43 QTHHQCGTCKMGPATDRTAVV-DPRLRVYGIQGLRVIDASIMPVLPGGHTVAPTYMIGEKGADMIKEDWLPGY 114 (120)
Q Consensus 43 ~~~H~~GT~~Mg~~~d~~~VV-D~~~rV~Gv~nLrVvDaSv~P~~~~~np~~t~~a~a~r~A~~i~~~~~~~~ 114 (120)
+++|++|||+||.+++.+||| |+++||||++||||+|+|+||+.+++||++|+||+|+|+|+.|+++++...
T Consensus 545 ~~~H~~gt~~mg~~~~~~~vvvd~~~~~~~~~~l~v~d~s~~p~~~~~np~~t~~a~a~r~a~~i~~~~~~~~ 617 (623)
T 3pl8_A 545 LVLHLGGTHRMGFDEKEDNCCVNTDSRVFGFKNLFLGGCGNIPTAYGANPTLTAMSLAIKSCEYIKQNFTPSP 617 (623)
T ss_dssp TTCCCBCTTCBCSSTTTTTCSBCTTCBBTTCSSEEECSGGGCCSCCCSCCHHHHHHHHHHHHHHHHHHCCCCC
T ss_pred CcccCCCceeCCCCCCCCeeEECCCCCEecCCCeEEecCCccCCCCCcChHHHHHHHHHHHHHHHHHHhhcCC
Confidence 478999999999874457997 999999999999999999999999999999999999999999999997764
No 12
>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*
Probab=86.41 E-value=1.7 Score=29.56 Aligned_cols=53 Identities=11% Similarity=-0.159 Sum_probs=36.2
Q ss_pred ecCCCeEeccCCcEEe-cCCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhCCCCCCCCCC
Q psy10421 63 VDPRLRVYGIQGLRVI-DASIMPVLPGGHTVAPTYMIGEKGADMIKEDWLPGYTPTFDF 120 (120)
Q Consensus 63 VD~~~rV~Gv~nLrVv-DaSv~P~~~~~np~~t~~a~a~r~A~~i~~~~~~~~~~~~~~ 120 (120)
||+.++. .++|+|++ |..-.|. ......+.-|..+|..|....+......|+|
T Consensus 127 vd~~~~t-~~~~i~a~GD~~~~~~----~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~ 180 (180)
T 2ywl_A 127 TDEGGRT-SYPRVYAAGVARGKVP----GHAIISAGDGAYVAVHLVSDLRGEPYKDHAL 180 (180)
T ss_dssp CCTTCBC-SSTTEEECGGGGTCCS----CCHHHHHHHHHHHHHHHHHHHHTSCCCCCCC
T ss_pred eCCCCCc-CCCCEEEeecccCcch----hhHHHHHHhHHHHHHHHHHHhhhccccccCC
Confidence 6777776 78899988 6655442 1334556667788888887766555667775
No 13
>3hyw_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3hyv_A* 3hyx_A*
Probab=84.93 E-value=1.6 Score=34.56 Aligned_cols=54 Identities=11% Similarity=0.021 Sum_probs=40.2
Q ss_pred ceecCCCeEeccCCcEEe-cCCCCCCCC-----CCCC--HHHHHHHHHHHHHHHHHhhCCCC
Q psy10421 61 AVVDPRLRVYGIQGLRVI-DASIMPVLP-----GGHT--VAPTYMIGEKGADMIKEDWLPGY 114 (120)
Q Consensus 61 ~VVD~~~rV~Gv~nLrVv-DaSv~P~~~-----~~np--~~t~~a~a~r~A~~i~~~~~~~~ 114 (120)
=+||+.+|+-+.+|+|.+ |.+.+|... ...| -..+...|.-+|+.|.+..+-.+
T Consensus 275 i~vd~~lq~t~~~~IfAiGD~a~~p~~~~~~~~~~~pk~a~~A~~qg~~~A~Ni~~~l~g~~ 336 (430)
T 3hyw_A 275 VIVNRCFQNPTYKNIFGVGVVTAIPPIEKTPIPTGVPKTGMMIEQMAMAVAHNIVNDIRNNP 336 (430)
T ss_dssp BCCCTTSBCSSSTTEEECSTTBCCCCSSCCSSCCCCCCCHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred EEecccccCCCCCCEEEeccEEecCCcccCcCcCccchHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 378889999999999999 888888542 2233 23556678889999988776543
No 14
>4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A*
Probab=83.06 E-value=2 Score=35.08 Aligned_cols=45 Identities=20% Similarity=0.147 Sum_probs=34.8
Q ss_pred eecCCCeEeccCCcEEe-cCCCCCCCCCCCCHHHHHHHHHHHHHHHHHh
Q psy10421 62 VVDPRLRVYGIQGLRVI-DASIMPVLPGGHTVAPTYMIGEKGADMIKED 109 (120)
Q Consensus 62 VVD~~~rV~Gv~nLrVv-DaSv~P~~~~~np~~t~~a~a~r~A~~i~~~ 109 (120)
+||+.+|+.+.+|+|++ |.+..|..+.+ ...+.-|..+|+.|...
T Consensus 354 ~Vd~~lq~~~~~~IfAiGD~a~~~~p~~a---~~A~qqg~~~A~ni~~~ 399 (502)
T 4g6h_A 354 AVNDFLQVKGSNNIFAIGDNAFAGLPPTA---QVAHQEAEYLAKNFDKM 399 (502)
T ss_dssp EBCTTSBBTTCSSEEECGGGEESSSCCCH---HHHHHHHHHHHHHHHHH
T ss_pred eECCccccCCCCCEEEEEcccCCCCCCch---HHHHHHHHHHHHHHHHH
Confidence 69999999999999999 88888765533 34566677888877543
No 15
>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}
Probab=79.44 E-value=5.4 Score=29.45 Aligned_cols=56 Identities=14% Similarity=0.058 Sum_probs=35.5
Q ss_pred eecCCCeEeccCCcEEe-cCCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhCCCCCCCCCC
Q psy10421 62 VVDPRLRVYGIQGLRVI-DASIMPVLPGGHTVAPTYMIGEKGADMIKEDWLPGYTPTFDF 120 (120)
Q Consensus 62 VVD~~~rV~Gv~nLrVv-DaSv~P~~~~~np~~t~~a~a~r~A~~i~~~~~~~~~~~~~~ 120 (120)
+||+.++ ..++|||++ |..-+|..+ ......+.-|..+|..|.+.......+.+.|
T Consensus 270 ~vd~~~~-t~~~~vya~GD~~~~~~~~--~~~~~A~~~g~~aa~~i~~~l~~~~~~~~~~ 326 (335)
T 2zbw_A 270 KVDTTMA-TSIPGVYACGDIVTYPGKL--PLIVLGFGEAAIAANHAAAYANPALKVNPGH 326 (335)
T ss_dssp ECCTTCB-CSSTTEEECSTTEECTTCC--CCHHHHHHHHHHHHHHHHHHHCTTSCSSCCC
T ss_pred eeCCCCC-CCCCCEEEeccccccCcch--hhhhhhHHHHHHHHHHHHHHhhhhhccCCcc
Confidence 5677777 478999998 666555321 2233344557888888888776555544443
No 16
>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A*
Probab=79.41 E-value=6.5 Score=30.87 Aligned_cols=54 Identities=19% Similarity=0.094 Sum_probs=37.9
Q ss_pred ceecCCCeEeccCCcEEe-cCCCCCCC-----CCCCC--HHHHHHHHHHHHHHHHHhhCCCC
Q psy10421 61 AVVDPRLRVYGIQGLRVI-DASIMPVL-----PGGHT--VAPTYMIGEKGADMIKEDWLPGY 114 (120)
Q Consensus 61 ~VVD~~~rV~Gv~nLrVv-DaSv~P~~-----~~~np--~~t~~a~a~r~A~~i~~~~~~~~ 114 (120)
=.||+.+|..+.+|+|++ |+.-+|.. +...| ......-|..+|+.|.+..+-..
T Consensus 286 i~Vd~~l~t~~~~~Ifa~GD~~~~~~~~~~~~~~~~pk~~~~A~~qg~~aA~ni~~~l~g~~ 347 (437)
T 3sx6_A 286 VLVDEHQRSKKYANIFAAGIAIAIPPVETTPVPTGAPKTGYMIESMVSAAVHNIKADLEGRK 347 (437)
T ss_dssp BCBCTTSBBSSCTTEEECGGGBCCCCSCCCSSCCCCCCCHHHHHHHHHHHHHHHHHHTTTSC
T ss_pred EEeChhccCCCCCCEEEEEEEeccCCcCCCcCCCCCCcHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 368888898899999999 87777642 11223 44556667789999988775443
No 17
>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A*
Probab=78.28 E-value=6.3 Score=30.44 Aligned_cols=48 Identities=17% Similarity=0.101 Sum_probs=34.6
Q ss_pred ceecCCCeEeccCCcEEe-cCCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhC
Q psy10421 61 AVVDPRLRVYGIQGLRVI-DASIMPVLPGGHTVAPTYMIGEKGADMIKEDWL 111 (120)
Q Consensus 61 ~VVD~~~rV~Gv~nLrVv-DaSv~P~~~~~np~~t~~a~a~r~A~~i~~~~~ 111 (120)
=.||..+|+.+.+|+|++ |.+-+|. ......+..-|..+|+.|....+
T Consensus 288 i~vd~~~~~~~~~~vfa~GD~~~~~~---~~~~~~A~~q~~~aa~~i~~~l~ 336 (409)
T 3h8l_A 288 IPTDLNMVSIKYDNVYAVGDANSMTV---PKLGYLAVMTGRIAAQHLANRLG 336 (409)
T ss_dssp BCBBTTSBBSSCTTEEECGGGBTTCC---SCCHHHHHHHHHHHHHHHHHHTT
T ss_pred EEeCcccccCCCCCEEEeehhccCCC---CcHHHHHHHHHHHHHHHHHHHhc
Confidence 368888898899999999 7665542 12334556667788888888763
No 18
>4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis}
Probab=72.84 E-value=1.5 Score=34.66 Aligned_cols=45 Identities=22% Similarity=0.251 Sum_probs=24.4
Q ss_pred CCeEeccCCcEEecCCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhCCCC
Q psy10421 66 RLRVYGIQGLRVIDASIMPVLPGGHTVAPTYMIGEKGADMIKEDWLPGY 114 (120)
Q Consensus 66 ~~rV~Gv~nLrVvDaSv~P~~~~~np~~t~~a~a~r~A~~i~~~~~~~~ 114 (120)
..+...++|||.+.+|++|-. + ..-++.=|..+|+.|+++++-..
T Consensus 451 ~~~~t~i~gLyl~G~~t~pG~-G---v~ga~~SG~~aA~~il~dL~gG~ 495 (501)
T 4dgk_A 451 HNRDKTITNLYLVGAGTHPGA-G---IPGVIGSAKATAGLMLEDLIGGS 495 (501)
T ss_dssp -----CCTTEEECCCH----------HHHHHHHHHHHHHHHHHHHC---
T ss_pred CCCCCCCCCEEEECCCCCCcc-c---HHHHHHHHHHHHHHHHHHhcCCC
Confidence 344567899999999998841 1 11233348999999999986543
No 19
>3h28_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3h27_A* 3h29_A* 3hyv_A* 3hyw_A* 3hyx_A*
Probab=69.83 E-value=13 Score=29.07 Aligned_cols=52 Identities=15% Similarity=0.108 Sum_probs=36.9
Q ss_pred eecCCCeEeccCCcEEe-cCCCCCCC-----CCCC--CHHHHHHHHHHHHHHHHHhhCCC
Q psy10421 62 VVDPRLRVYGIQGLRVI-DASIMPVL-----PGGH--TVAPTYMIGEKGADMIKEDWLPG 113 (120)
Q Consensus 62 VVD~~~rV~Gv~nLrVv-DaSv~P~~-----~~~n--p~~t~~a~a~r~A~~i~~~~~~~ 113 (120)
.||+.+|..+++|+|++ |+.-+|.. +... .....+.-|..+|+.|.+..+-.
T Consensus 276 ~Vd~~l~t~~~~~Ifa~GD~~~~~~~~~~~~~~~~pk~~~~A~~~g~~aa~ni~~~l~g~ 335 (430)
T 3h28_A 276 IVNRCFQNPTYKNIFGVGVVTAIPPIEKTPIPTGVPKTGMMIEQMAMAVAHNIVNDIRNN 335 (430)
T ss_dssp CCCTTSBCSSSTTEEECSTTBCCCCSSCCSSCCCCCCCHHHHHHHHHHHHHHHHHHHTTC
T ss_pred ecCccccCCCCCCEEEEEeeeccCCccCCCCCCCCCchHHHHHHHHHHHHHHHHHHhcCC
Confidence 67888888899999999 77776642 1112 34556666888999998877544
No 20
>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*
Probab=67.44 E-value=11 Score=27.20 Aligned_cols=47 Identities=19% Similarity=0.114 Sum_probs=32.9
Q ss_pred ceecCCCeEeccCCcEEe-cCCCCCCCCCCCCHHHHHHHHHHHHHHHHHhh
Q psy10421 61 AVVDPRLRVYGIQGLRVI-DASIMPVLPGGHTVAPTYMIGEKGADMIKEDW 110 (120)
Q Consensus 61 ~VVD~~~rV~Gv~nLrVv-DaSv~P~~~~~np~~t~~a~a~r~A~~i~~~~ 110 (120)
=.||.+++. .++|||++ |+.-.| +........+.-|..+|..|.+..
T Consensus 269 i~vd~~~~t-~~~~vya~GD~~~~~--~~~~~~~~A~~~g~~aa~~i~~~l 316 (323)
T 3f8d_A 269 IKVDEWMRT-SVPGVFAAGDCTSAW--LGFRQVITAVAQGAVAATSAYRYV 316 (323)
T ss_dssp BCCCTTCBC-SSTTEEECSTTBSTT--TTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred EecCCCcee-cCCCEEEcceecCCC--CcccceeehhhHHHHHHHHHHHHH
Confidence 467888886 79999999 766655 233455666667778888776654
No 21
>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*
Probab=63.67 E-value=20 Score=25.97 Aligned_cols=49 Identities=16% Similarity=0.154 Sum_probs=32.1
Q ss_pred eecCCCeEeccCCcEEe-cCCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhCCC
Q psy10421 62 VVDPRLRVYGIQGLRVI-DASIMPVLPGGHTVAPTYMIGEKGADMIKEDWLPG 113 (120)
Q Consensus 62 VVD~~~rV~Gv~nLrVv-DaSv~P~~~~~np~~t~~a~a~r~A~~i~~~~~~~ 113 (120)
.||..++. .++|||++ |+.-+|..+ ......+.-|..+|..|.+..+..
T Consensus 268 ~vd~~~~t-~~~~vya~GD~~~~~~~~--~~~~~A~~~g~~aa~~i~~~l~~~ 317 (332)
T 3lzw_A 268 VVKSTMET-NIEGFFAAGDICTYEGKV--NLIASGFGEAPTAVNNAKAYMDPK 317 (332)
T ss_dssp ECCTTSBC-SSTTEEECGGGEECTTCC--CCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred EeCCCCce-ecCCEEEccceecCCCCc--ceEeeehhhHHHHHHHHHHhhChh
Confidence 57777875 79999999 655444221 123344555788888888777554
No 22
>3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A*
Probab=63.28 E-value=14 Score=28.22 Aligned_cols=48 Identities=21% Similarity=0.159 Sum_probs=33.3
Q ss_pred eecCC-CeEeccCCcEEe-cCC-CCCCCCCCCCHHHHHHHHHHHHHHHHHhhCC
Q psy10421 62 VVDPR-LRVYGIQGLRVI-DAS-IMPVLPGGHTVAPTYMIGEKGADMIKEDWLP 112 (120)
Q Consensus 62 VVD~~-~rV~Gv~nLrVv-DaS-v~P~~~~~np~~t~~a~a~r~A~~i~~~~~~ 112 (120)
.||++ ++..+++|+|.+ |.. ..|.. -.......-|..+|+.|.+.++-
T Consensus 275 ~VD~~tl~~t~~p~VfAiGDva~~~~~p---k~a~~A~~qa~v~A~ni~~~l~G 325 (401)
T 3vrd_B 275 PVDIRTFESSLQPGIHVIGDACNAAPMP---KSAYSANSQAKVAAAAVVALLKG 325 (401)
T ss_dssp CBCTTTCBBSSSTTEEECGGGBCCTTSC---BSHHHHHHHHHHHHHHHHHHHHT
T ss_pred EECCCcceecCCCCEEEecccccCCCCC---chHHHHHHHHHHHHHHHHHHhcC
Confidence 68886 899999999999 643 34422 12345566688888888877643
No 23
>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}
Probab=59.93 E-value=17 Score=27.14 Aligned_cols=50 Identities=18% Similarity=0.207 Sum_probs=32.2
Q ss_pred ceecCCCeEeccCCcEEe-cCCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhCCC
Q psy10421 61 AVVDPRLRVYGIQGLRVI-DASIMPVLPGGHTVAPTYMIGEKGADMIKEDWLPG 113 (120)
Q Consensus 61 ~VVD~~~rV~Gv~nLrVv-DaSv~P~~~~~np~~t~~a~a~r~A~~i~~~~~~~ 113 (120)
=+||..++. .++|||++ |..-+|.. .......+.-|..+|..|.......
T Consensus 280 i~vd~~~~t-~~~~vya~GD~~~~~~~--~~~~~~A~~~g~~aa~~i~~~l~~~ 330 (360)
T 3ab1_A 280 LVVDSHMKT-SVDGLYAAGDIAYYPGK--LKIIQTGLSEATMAVRHSLSYIKPG 330 (360)
T ss_dssp EECCTTSBC-SSTTEEECSTTEECTTC--CCSHHHHHHHHHHHHHHHHHHHSCC
T ss_pred eeecCCCcC-CCCCEEEecCccCCCCc--cceeehhHHHHHHHHHHHHhhcCCc
Confidence 367888885 78999999 66655531 1223344455778888887766443
No 24
>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5
Probab=50.80 E-value=30 Score=24.96 Aligned_cols=45 Identities=13% Similarity=0.207 Sum_probs=31.1
Q ss_pred ceecCCCeEeccCCcEEe-cCCCCCCCCCCCCHHHHHHHHHHHHHHHHHhh
Q psy10421 61 AVVDPRLRVYGIQGLRVI-DASIMPVLPGGHTVAPTYMIGEKGADMIKEDW 110 (120)
Q Consensus 61 ~VVD~~~rV~Gv~nLrVv-DaSv~P~~~~~np~~t~~a~a~r~A~~i~~~~ 110 (120)
=+||.+++ ..++|+|++ |..-.|. ......+.-|..+|..|.+.+
T Consensus 259 i~vd~~~~-t~~~~vya~GD~~~~~~----~~~~~A~~~g~~aa~~i~~~l 304 (310)
T 1fl2_A 259 IIIDAKCE-TNVKGVFAAGDCTTVPY----KQIIIATGEGAKASLSAFDYL 304 (310)
T ss_dssp BCCCTTCB-CSSTTEEECSTTBSCSS----CCHHHHHHHHHHHHHHHHHHH
T ss_pred EEcCCCCc-cCCCCEEEeecccCCcc----hhhhhhHhhHHHHHHHHHHHH
Confidence 36788887 678999998 6655542 234555666778888877654
No 25
>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}
Probab=44.81 E-value=39 Score=24.16 Aligned_cols=45 Identities=18% Similarity=0.044 Sum_probs=30.6
Q ss_pred ceecCCCeEeccCCcEEe-cCCCCCCCCCCCCHHHHHHHHHHHHHHHHHhh
Q psy10421 61 AVVDPRLRVYGIQGLRVI-DASIMPVLPGGHTVAPTYMIGEKGADMIKEDW 110 (120)
Q Consensus 61 ~VVD~~~rV~Gv~nLrVv-DaSv~P~~~~~np~~t~~a~a~r~A~~i~~~~ 110 (120)
=.||+.++. .++|+|++ |+.-.+ .......+.-|..+|..|.+..
T Consensus 266 i~vd~~~~t-~~~~v~a~GD~~~~~----~~~~~~A~~~g~~aa~~i~~~l 311 (315)
T 3r9u_A 266 VSVDLKMQT-SVAGLFAAGDLRKDA----PKQVICAAGDGAVAALSAMAYI 311 (315)
T ss_dssp BCCCTTCBC-SSTTEEECGGGBTTC----CCCHHHHHHHHHHHHHHHHHHH
T ss_pred EEeCCCccc-CCCCEEEeecccCCc----hhhhhhHHhhHHHHHHHHHHHH
Confidence 467888886 89999999 554222 2344555666788888877654
No 26
>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*
Probab=42.11 E-value=47 Score=23.92 Aligned_cols=45 Identities=24% Similarity=0.218 Sum_probs=29.4
Q ss_pred ceecCCCeEeccCCcEEe-cCCCCCCCCCCCCHHHHHHHHHHHHHHHHHhh
Q psy10421 61 AVVDPRLRVYGIQGLRVI-DASIMPVLPGGHTVAPTYMIGEKGADMIKEDW 110 (120)
Q Consensus 61 ~VVD~~~rV~Gv~nLrVv-DaSv~P~~~~~np~~t~~a~a~r~A~~i~~~~ 110 (120)
=+||..++. .++|+|++ |..-.| .......+.-|..+|..|.+.+
T Consensus 263 i~vd~~~~t-~~~~vya~GD~~~~~----~~~~~~A~~~g~~aa~~i~~~l 308 (311)
T 2q0l_A 263 IVVDFSMKT-NVQGLFAAGDIRIFA----PKQVVCAASDGATAALSVISYL 308 (311)
T ss_dssp BCCCTTCBC-SSTTEEECSTTBTTC----CCCHHHHHHHHHHHHHHHHHHH
T ss_pred EEeCCcccc-CCCCeEEcccccCcc----hHHHHHHHHhHHHHHHHHHHHH
Confidence 467777875 78999999 555442 1223445556778888877654
No 27
>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*
Probab=39.49 E-value=52 Score=23.91 Aligned_cols=45 Identities=13% Similarity=-0.010 Sum_probs=28.9
Q ss_pred eecCCCeEeccCCcEEe-cCCCCCCCCCCCCHHHHHHHHHHHHHHHHHhh
Q psy10421 62 VVDPRLRVYGIQGLRVI-DASIMPVLPGGHTVAPTYMIGEKGADMIKEDW 110 (120)
Q Consensus 62 VVD~~~rV~Gv~nLrVv-DaSv~P~~~~~np~~t~~a~a~r~A~~i~~~~ 110 (120)
+||+.+....++|+|++ |..-.| .......+.-|..+|..|.+.+
T Consensus 277 ~vd~~~~~t~~~~vya~GD~~~~~----~~~~~~A~~~g~~aa~~i~~~l 322 (333)
T 1vdc_A 277 VTKPGTTQTSVPGVFAAGDVQDKK----YRQAITAAGTGCMAALDAEHYL 322 (333)
T ss_dssp CCCTTSCBCSSTTEEECGGGGCSS----CCCHHHHHHHHHHHHHHHHHHH
T ss_pred EechhhcccCCCCEEEeeeccCCC----chhHHHHHHhHHHHHHHHHHHH
Confidence 55665545678999999 655444 1234455566778888776655
No 28
>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*
Probab=37.89 E-value=62 Score=23.28 Aligned_cols=48 Identities=13% Similarity=-0.121 Sum_probs=30.3
Q ss_pred eecCCC----eEeccCCcEEe-cCCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhCCC
Q psy10421 62 VVDPRL----RVYGIQGLRVI-DASIMPVLPGGHTVAPTYMIGEKGADMIKEDWLPG 113 (120)
Q Consensus 62 VVD~~~----rV~Gv~nLrVv-DaSv~P~~~~~np~~t~~a~a~r~A~~i~~~~~~~ 113 (120)
+||+.+ +...++|+|++ |..-.| .......+.-|..+|..|.+.++..
T Consensus 264 ~vd~~~~~~~~~t~~~~vya~GD~~~~~----~~~~~~A~~~g~~aa~~i~~~l~~~ 316 (320)
T 1trb_A 264 KVQSGIHGNATQTSIPGVFAAGDVMDHI----YRQAITSAGTGCMAALDAERYLDGL 316 (320)
T ss_dssp CCCCSSSSCTTBCSSTTEEECGGGGCSS----SCCHHHHHHHHHHHHHHHHHHHTC-
T ss_pred EECCCcccccccCCCCCEEEcccccCCc----chhhhhhhccHHHHHHHHHHHHHhc
Confidence 345554 34567899998 555443 1234556677888898888776543
No 29
>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}
Probab=36.99 E-value=72 Score=23.08 Aligned_cols=45 Identities=27% Similarity=0.214 Sum_probs=29.8
Q ss_pred eecCCCeEeccCCcEEe-cCCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhC
Q psy10421 62 VVDPRLRVYGIQGLRVI-DASIMPVLPGGHTVAPTYMIGEKGADMIKEDWL 111 (120)
Q Consensus 62 VVD~~~rV~Gv~nLrVv-DaSv~P~~~~~np~~t~~a~a~r~A~~i~~~~~ 111 (120)
+||+.++ ..++|+|++ |..-.| .......+.-|..+|..|.+.++
T Consensus 271 ~vd~~~~-t~~~~vya~GD~~~~~----~~~~~~A~~~g~~aa~~i~~~l~ 316 (319)
T 3cty_A 271 VVDSRQR-TSVPGVYAAGDVTSGN----FAQIASAVGDGCKAALSLYSDSI 316 (319)
T ss_dssp CCCTTCB-CSSTTEEECSTTBTTC----CCCHHHHHHHHHHHHHHHHHHHT
T ss_pred eCCCCCc-cCCCCEEEeecccCcc----hhhHHHHHHHHHHHHHHHHHHhh
Confidence 5677766 478999999 554432 12344556667888888877664
No 30
>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}
Probab=36.11 E-value=67 Score=23.33 Aligned_cols=45 Identities=20% Similarity=0.104 Sum_probs=29.2
Q ss_pred ceecCCCeEeccCCcEEe-cCCCCCCCCCCCCHHHHHHHHHHHHHHHHHhh
Q psy10421 61 AVVDPRLRVYGIQGLRVI-DASIMPVLPGGHTVAPTYMIGEKGADMIKEDW 110 (120)
Q Consensus 61 ~VVD~~~rV~Gv~nLrVv-DaSv~P~~~~~np~~t~~a~a~r~A~~i~~~~ 110 (120)
=+||.+++. .++|+|++ |..-.| .......+.-|..+|..|...+
T Consensus 266 i~vd~~~~t-~~~~vya~GD~~~~~----~~~~~~A~~~g~~aa~~i~~~l 311 (325)
T 2q7v_A 266 VDVRDEIYT-NIPMLFAAGDVSDYI----YRQLATSVGAGTRAAMMTERQL 311 (325)
T ss_dssp BCCBTTTBC-SSTTEEECSTTTCSS----CCCHHHHHHHHHHHHHHHHHHH
T ss_pred EecCCCCcc-CCCCEEEeecccCcc----HHHHHHHHHHHHHHHHHHHHHH
Confidence 367777774 78999999 655443 1234455566677777776554
No 31
>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}
Probab=36.03 E-value=57 Score=23.04 Aligned_cols=45 Identities=20% Similarity=0.134 Sum_probs=29.8
Q ss_pred eecCCCeEeccCCcEEe-cCCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhCC
Q psy10421 62 VVDPRLRVYGIQGLRVI-DASIMPVLPGGHTVAPTYMIGEKGADMIKEDWLP 112 (120)
Q Consensus 62 VVD~~~rV~Gv~nLrVv-DaSv~P~~~~~np~~t~~a~a~r~A~~i~~~~~~ 112 (120)
+||..++ ..++|+|++ |+.-.| ......+.-|..+|..|.+.+..
T Consensus 248 ~vd~~~~-t~~~~vya~GD~~~~~-----~~~~~A~~~g~~aa~~i~~~l~~ 293 (297)
T 3fbs_A 248 VTDPMKQ-TTARGIFACGDVARPA-----GSVALAVGDGAMAGAAAHRSILF 293 (297)
T ss_dssp CCCTTCB-CSSTTEEECSGGGCTT-----CCHHHHHHHHHHHHHHHHHHHHC
T ss_pred EeCCCCc-cCCCCEEEEeecCCch-----HHHHHHHHhHHHHHHHHHHHHhh
Confidence 4566655 578999999 665443 33455566677888888766543
No 32
>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*
Probab=34.34 E-value=80 Score=22.72 Aligned_cols=44 Identities=9% Similarity=-0.120 Sum_probs=29.6
Q ss_pred cCCCeEeccCCcEEe-cCCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhCC
Q psy10421 64 DPRLRVYGIQGLRVI-DASIMPVLPGGHTVAPTYMIGEKGADMIKEDWLP 112 (120)
Q Consensus 64 D~~~rV~Gv~nLrVv-DaSv~P~~~~~np~~t~~a~a~r~A~~i~~~~~~ 112 (120)
|..++ ..++|+|++ |+.-.+ .......+.-|..+|..|.+.++.
T Consensus 292 ~~~~~-t~~~~vya~GD~~~~~----~~~~~~A~~~g~~aa~~i~~~l~~ 336 (338)
T 3itj_A 292 PGSSL-TSVPGFFAAGDVQDSK----YRQAITSAGSGCMAALDAEKYLTS 336 (338)
T ss_dssp TTSSB-CSSTTEEECGGGGCSS----CCCHHHHHHHHHHHHHHHHHHHTT
T ss_pred Ccccc-cCCCCEEEeeccCCCC----ccceeeehhhhHHHHHHHHHHHhc
Confidence 44444 578999999 554322 233456677788899888877654
No 33
>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A*
Probab=33.97 E-value=28 Score=27.75 Aligned_cols=45 Identities=11% Similarity=0.042 Sum_probs=30.1
Q ss_pred eecCCCeEeccCCcEEe-cCCCCCCCCCCCCHHHHHHHHHHHHHHHHHhh
Q psy10421 62 VVDPRLRVYGIQGLRVI-DASIMPVLPGGHTVAPTYMIGEKGADMIKEDW 110 (120)
Q Consensus 62 VVD~~~rV~Gv~nLrVv-DaSv~P~~~~~np~~t~~a~a~r~A~~i~~~~ 110 (120)
+||..+||.+++|+|++ |..--|... ..+.+.-|..+|+.|..++
T Consensus 341 ~vn~~~rvt~~pgvya~GD~~~gp~~~----i~~a~~~g~~~a~~i~~~l 386 (456)
T 1lqt_A 341 IPNVGGRINGSPNEYVVGWIKRGPTGV----IGTNKKDAQDTVDTLIKNL 386 (456)
T ss_dssp CCEETTEETTCSSEEECTHHHHCSCSC----TTHHHHHHHHHHHHHHHHH
T ss_pred eECCCCcCCCCCCEEEEeccCCCCchh----HHHHHHHHHHHHHHHHHHH
Confidence 56888998899999999 554334321 1245666777777776554
No 34
>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A*
Probab=33.38 E-value=37 Score=27.65 Aligned_cols=49 Identities=16% Similarity=0.222 Sum_probs=34.6
Q ss_pred eecCCCeEe-----ccCCcEEec---CCCCC-CCCCCCCHHHHHHHHHHHHHHHHHhh
Q psy10421 62 VVDPRLRVY-----GIQGLRVID---ASIMP-VLPGGHTVAPTYMIGEKGADMIKEDW 110 (120)
Q Consensus 62 VVD~~~rV~-----Gv~nLrVvD---aSv~P-~~~~~np~~t~~a~a~r~A~~i~~~~ 110 (120)
.+|.++||. -++|||.+. ++++- .-+++|..+..+..|.++++.+.+..
T Consensus 511 ~id~~~~vl~~~g~~I~GLyAaGe~~~g~~g~~~l~g~sl~~~~~fGr~Ag~~aa~~~ 568 (571)
T 1y0p_A 511 MIDTKAEVMNAKKQVIPGLYGAGEVTGGVHGANRLGGNAISDIITFGRLAGEEAAKYS 568 (571)
T ss_dssp EBCTTCEEECTTSCEEEEEEECSTTEESSSTTSCCTTHHHHHHHHHHHHHHHHHHHHC
T ss_pred EECCCceEECCCCCCcCCcEeceEcCCCCcCCCCCchHhHHHHHHHHHHHHHHHHHHh
Confidence 366777763 489999985 34443 23467778888889999998886654
No 35
>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1
Probab=32.81 E-value=50 Score=26.87 Aligned_cols=50 Identities=22% Similarity=0.300 Sum_probs=34.4
Q ss_pred eecCCCeEe-----ccCCcEEec---CCCCC-CCCCCCCHHHHHHHHHHHHHHHHHhhC
Q psy10421 62 VVDPRLRVY-----GIQGLRVID---ASIMP-VLPGGHTVAPTYMIGEKGADMIKEDWL 111 (120)
Q Consensus 62 VVD~~~rV~-----Gv~nLrVvD---aSv~P-~~~~~np~~t~~a~a~r~A~~i~~~~~ 111 (120)
.||.++||. -++|||.+. ++++- .-+++|..+..+..+.++++.+.+..+
T Consensus 506 ~vd~~~~vl~~~g~~I~GLyAaGe~~~g~~g~~~~~g~sl~~~~v~Gr~Ag~~aa~~~~ 564 (566)
T 1qo8_A 506 AINTTASVLDLQSKPIDGLFAAGEVTGGVHGYNRLGGNAIADTVVFGRIAGDNAAKHAL 564 (566)
T ss_dssp CBCTTCEEEBTTSCEEEEEEECSTTBCSSSTTCCCTTHHHHHHHHHHHHHHHHHHHHHC
T ss_pred EECCCCeEECCCCCEeCCEEecccccCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHhh
Confidence 366666663 589999994 34442 234667777888889999888876543
No 36
>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}
Probab=29.13 E-value=98 Score=22.64 Aligned_cols=43 Identities=14% Similarity=-0.001 Sum_probs=25.6
Q ss_pred eecCCCeEeccCCcEEe-cCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q psy10421 62 VVDPRLRVYGIQGLRVI-DASIMPVLPGGHTVAPTYMIGEKGADMIKE 108 (120)
Q Consensus 62 VVD~~~rV~Gv~nLrVv-DaSv~P~~~~~np~~t~~a~a~r~A~~i~~ 108 (120)
+||+++.....+|+|++ |..-.| .......+.-|..+|..|.+
T Consensus 270 ~vd~~~~~t~~~~iya~GD~~~~~----~~~~~~A~~~g~~aA~~i~~ 313 (335)
T 2a87_A 270 LVQGRTTSTSLPGVFAAGDLVDRT----YRQAVTAAGSGCAAAIDAER 313 (335)
T ss_dssp CCSTTSSBCSSTTEEECGGGTCCS----CCCHHHHHHHHHHHHHHHHH
T ss_pred EeCCCCCccCCCCEEEeeecCCcc----HHHHHHHHHhHHHHHHHHHH
Confidence 55665556678999999 554433 12234445556666666644
No 37
>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}
Probab=28.30 E-value=1e+02 Score=22.25 Aligned_cols=48 Identities=10% Similarity=0.043 Sum_probs=30.9
Q ss_pred eecCC-CeEeccCCcEEec--CCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhCC
Q psy10421 62 VVDPR-LRVYGIQGLRVID--ASIMPVLPGGHTVAPTYMIGEKGADMIKEDWLP 112 (120)
Q Consensus 62 VVD~~-~rV~Gv~nLrVvD--aSv~P~~~~~np~~t~~a~a~r~A~~i~~~~~~ 112 (120)
+||.. ++..+++|+|++. -..-|. .......+.-|..+|+.|.+.++.
T Consensus 303 ~vd~~~l~~t~~~~vya~Gd~d~~~~~---~~~~~~A~~~g~~~a~~i~~~l~g 353 (357)
T 4a9w_A 303 EVDGSGLRALAVPSVWLLGYGDWNGMA---SATLIGVTRYAREAVRQVTAYCAD 353 (357)
T ss_dssp CBCTTSCBBSSCTTEEECSSCGGGSTT---CSSTTTHHHHHHHHHHHHHHHTC-
T ss_pred cccCCcccCCCCCCeEEeccccccccc---hhhhhhhHHHHHHHHHHHHHHHHh
Confidence 56666 5778999999995 222221 122333677888999988877643
No 38
>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1d4e_A* 1d4c_A*
Probab=26.44 E-value=55 Score=26.77 Aligned_cols=49 Identities=18% Similarity=0.213 Sum_probs=34.5
Q ss_pred eecCCCeEe------ccCCcEEec---CCCCC-CCCCCCCHHHHHHHHHHHHHHHHHhh
Q psy10421 62 VVDPRLRVY------GIQGLRVID---ASIMP-VLPGGHTVAPTYMIGEKGADMIKEDW 110 (120)
Q Consensus 62 VVD~~~rV~------Gv~nLrVvD---aSv~P-~~~~~np~~t~~a~a~r~A~~i~~~~ 110 (120)
.||.++||. -++|||.+. ++++- .-+++|..+..+..|.++++.+.+..
T Consensus 511 ~id~~~~Vl~~~g~~~I~GLyAaGe~~~g~~g~~~l~g~sl~~~~vfGr~Ag~~aa~~~ 569 (572)
T 1d4d_A 511 VIDTKAEVKSEKTAKPITGLYAAGEVTGGVHGANRLGGNAISDIVTYGRIAGASAAKFA 569 (572)
T ss_dssp EBCTTCEEEBSSSSSEEEEEEECSTTEESTTTTSCCTTHHHHHHHHHHHHHHHHHHHTT
T ss_pred EECCCCeEEcCCCCcccCCeeECeecccCCCCCCCCchHhHHHHHHHHHHHHHHHHHHh
Confidence 467777764 488899985 34442 22467778888999999999887654
No 39
>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A
Probab=23.98 E-value=1.2e+02 Score=24.30 Aligned_cols=45 Identities=13% Similarity=0.221 Sum_probs=29.3
Q ss_pred ceecCCCeEeccCCcEEe-cCCCCCCCCCCCCHHHHHHHHHHHHHHHHHhh
Q psy10421 61 AVVDPRLRVYGIQGLRVI-DASIMPVLPGGHTVAPTYMIGEKGADMIKEDW 110 (120)
Q Consensus 61 ~VVD~~~rV~Gv~nLrVv-DaSv~P~~~~~np~~t~~a~a~r~A~~i~~~~ 110 (120)
=+||..++. .++|+|++ |+.-.|. ......+.-|..+|..|.+.+
T Consensus 470 I~Vd~~~~t-s~p~VfA~GD~~~~~~----~~~~~A~~~g~~aa~~i~~~L 515 (521)
T 1hyu_A 470 IIIDAKCET-SVKGVFAAGDCTTVPY----KQIIIATGEGAKASLSAFDYL 515 (521)
T ss_dssp BCCCTTCBC-SSTTEEECSTTBCCSS----CCHHHHHHHHHHHHHHHHHHH
T ss_pred EEeCCCCCC-CCCCEEEeecccCCCc----ceeeehHHhHHHHHHHHHHHH
Confidence 467888885 78999999 6665552 234455555667777665543
No 40
>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A*
Probab=23.93 E-value=55 Score=26.06 Aligned_cols=46 Identities=17% Similarity=0.096 Sum_probs=31.8
Q ss_pred eecCCCeEeccCCcEEe-cCCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhC
Q psy10421 62 VVDPRLRVYGIQGLRVI-DASIMPVLPGGHTVAPTYMIGEKGADMIKEDWL 111 (120)
Q Consensus 62 VVD~~~rV~Gv~nLrVv-DaSv~P~~~~~np~~t~~a~a~r~A~~i~~~~~ 111 (120)
+||..+|+-+++|+|++ |..--|. .-..+.+.-|..+|+.|...+.
T Consensus 349 ~vn~~~rt~~~p~vya~Gd~~~g~~----~~i~~a~~~g~~aa~~i~~~l~ 395 (460)
T 1cjc_A 349 VPNMEGRVVDVPGLYCSGWVKRGPT----GVITTTMTDSFLTGQILLQDLK 395 (460)
T ss_dssp CCEETTEETTCTTEEECTHHHHCTT----CCHHHHHHHHHHHHHHHHHHHH
T ss_pred eECCCCcCcCCCCEEEEEeCCcCCC----ccHHHHHHHHHHHHHHHHHHHH
Confidence 56888999888999999 5543332 1133677778888888876653
No 41
>2h88_A Succinate dehydrogenase flavoprotein subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_A* 1yq3_A* 2fbw_A* 2h89_A* 2wqy_A* 1zoy_A* 1zp0_A* 3abv_A* 3ae1_A* 3ae2_A* 3ae3_A* 3ae4_A* 3ae5_A* 3ae6_A* 3ae7_A* 3ae8_A* 3ae9_A* 3aea_A* 3aeb_A* 3aec_A* ...
Probab=23.22 E-value=90 Score=26.16 Aligned_cols=51 Identities=18% Similarity=0.139 Sum_probs=37.8
Q ss_pred ceecCCCeEe--------ccCCcEEecC----CCCCC-CCCCCCHHHHHHHHHHHHHHHHHhhC
Q psy10421 61 AVVDPRLRVY--------GIQGLRVIDA----SIMPV-LPGGHTVAPTYMIGEKGADMIKEDWL 111 (120)
Q Consensus 61 ~VVD~~~rV~--------Gv~nLrVvDa----Sv~P~-~~~~np~~t~~a~a~r~A~~i~~~~~ 111 (120)
=.||.++||. -++|||.+.- |+.-. -.++|..+-++..|.++++.+.+..+
T Consensus 370 i~~d~~~~Vl~~~~~~~t~IpGLyAaGE~a~~g~hGanrlggnsL~~~~vfGr~Ag~~aa~~~~ 433 (621)
T 2h88_A 370 IPTNYKGQVITHVNGEDKVVPGLYACGEAASASVHGANRLGANSLLDLVVFGRACALTIAETCK 433 (621)
T ss_dssp EEBCTTSEEEEEETTEEEEEEEEEECGGGEECSSSTTSCCTTSHHHHHHHHHHHHHHHHHHHCC
T ss_pred EeECCCCeEeecccCCCcccCceEEccccccccccCCCCCchHhHHHHHHHHHHHHHHHHHhhh
Confidence 3588888885 4999999943 44431 24778888999999999998876653
No 42
>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*
Probab=21.51 E-value=83 Score=25.12 Aligned_cols=48 Identities=17% Similarity=0.181 Sum_probs=33.0
Q ss_pred ceecCCCeEeccCCcEEe-cCCCCCCCCCCCC-----HHHHHHHHHHHHHHHHHh
Q psy10421 61 AVVDPRLRVYGIQGLRVI-DASIMPVLPGGHT-----VAPTYMIGEKGADMIKED 109 (120)
Q Consensus 61 ~VVD~~~rV~Gv~nLrVv-DaSv~P~~~~~np-----~~t~~a~a~r~A~~i~~~ 109 (120)
=+||..++. .++|+|.+ |..-+|....+.+ ....+.-|..+|+.|...
T Consensus 285 i~vd~~~~t-~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~ 338 (565)
T 3ntd_A 285 IKVNAMMQT-SDPAIYAVGDAVEEQDFVTGQACLVPLAGPANRQGRMAADNMFGR 338 (565)
T ss_dssp BCCCTTCBC-SSTTEEECGGGBCEEBTTTCCEECCCCHHHHHHHHHHHHHHHTTC
T ss_pred EEECCCccc-CCCCEEEeeeeEeeccccCCceeecccHHHHHHHHHHHHHHhcCC
Confidence 467888886 78999999 7776666554433 334555677888887643
No 43
>4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase, dehydogenase, steroid catabolism; HET: FAD; 1.60A {Rhodococcus jostii} PDB: 4at2_A*
Probab=21.29 E-value=74 Score=25.40 Aligned_cols=46 Identities=13% Similarity=0.153 Sum_probs=31.5
Q ss_pred ceecCCCeEeccCCcEEec---CCCC-CCCCCCCCHHHHHHHHHHHHHHHHH
Q psy10421 61 AVVDPRLRVYGIQGLRVID---ASIM-PVLPGGHTVAPTYMIGEKGADMIKE 108 (120)
Q Consensus 61 ~VVD~~~rV~Gv~nLrVvD---aSv~-P~~~~~np~~t~~a~a~r~A~~i~~ 108 (120)
-|+|.+++ =++|||.+. ++++ ..-+++|....++..+.++++.+.+
T Consensus 459 ~Vl~~~g~--~I~GLyAaGe~~gg~~g~~y~~G~sl~~~~~fGr~Ag~~aa~ 508 (510)
T 4at0_A 459 EVLHVSGE--PIPGLFAAGRCTSGVCAGGYASGTSLGDGSFYGRRAGISAAK 508 (510)
T ss_dssp EEEBTTSS--EEEEEEECGGGBCCSCSSSCCTTHHHHHHHHHHHHHHHHHHC
T ss_pred ceECCCCC--CcCCeeeceecccCCCcCCCCcHHhHHHHHHHHHHHHHHHHh
Confidence 34444444 378999985 3555 3335677788888899999887753
No 44
>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A*
Probab=21.00 E-value=97 Score=24.51 Aligned_cols=47 Identities=17% Similarity=0.114 Sum_probs=31.2
Q ss_pred ceecCCCeEeccCCcEEe-cCCCCCCCCCCC-----CHHHHHHHHHHHHHHHHH
Q psy10421 61 AVVDPRLRVYGIQGLRVI-DASIMPVLPGGH-----TVAPTYMIGEKGADMIKE 108 (120)
Q Consensus 61 ~VVD~~~rV~Gv~nLrVv-DaSv~P~~~~~n-----p~~t~~a~a~r~A~~i~~ 108 (120)
=+||..+|. .++|+|.+ |..-.|..+.+. .......-|..+|+.|..
T Consensus 308 I~Vd~~~~t-~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~qg~~aa~~i~g 360 (490)
T 2bc0_A 308 FLVNKRQET-SIPGVYAIGDCATIYDNATRDTNYIALASNAVRTGIVAAHNACG 360 (490)
T ss_dssp BCCCTTCBC-SSTTEEECGGGBCEEETTTTEEECCCCHHHHHHHHHHHHHHHTT
T ss_pred EEECCCccc-CCCCEEEeeeeEEeccccCCceeecccHHHHHHHHHHHHHHhcC
Confidence 368888887 78999999 766655443331 234455567777777764
No 45
>3fpz_A Thiazole biosynthetic enzyme; FAD, mitochondrion, N thiamine biosynthesis, transit peptide, biosynthetic protei; HET: AHZ; 1.82A {Saccharomyces cerevisiae}
Probab=20.81 E-value=15 Score=27.46 Aligned_cols=50 Identities=14% Similarity=0.071 Sum_probs=31.5
Q ss_pred ceecCCCeEeccCCcEEec-CC--CCCCCCCCCCHHHH-HHHHHHHHHHHHHhhC
Q psy10421 61 AVVDPRLRVYGIQGLRVID-AS--IMPVLPGGHTVAPT-YMIGEKGADMIKEDWL 111 (120)
Q Consensus 61 ~VVD~~~rV~Gv~nLrVvD-aS--v~P~~~~~np~~t~-~a~a~r~A~~i~~~~~ 111 (120)
.+|...+....++|||++. +. +.+ .++..|+.-- +.-+.++|+.|.+.+.
T Consensus 272 ~iv~~~~~~t~vpGv~aaGDaa~~v~g-~~rmGp~~g~mi~SG~~AAe~I~~~la 325 (326)
T 3fpz_A 272 DVVIHSGAYAGVDNMYFAGMEVAELDG-LNRMGPTFGAMALSGVHAAEQILKHFA 325 (326)
T ss_dssp HHHHHCEECTTSBTEEECTHHHHHHHT-CCBCCSCCHHHHHHHHHHHHHHHHHHH
T ss_pred eEEECCCeEECCCCEEEEchHhccccC-CCcCchHHHHHHHHHHHHHHHHHHHhc
Confidence 5666677778899999984 32 222 2233343322 3348999999987653
No 46
>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}
Probab=20.42 E-value=1.6e+02 Score=23.36 Aligned_cols=42 Identities=19% Similarity=0.266 Sum_probs=29.3
Q ss_pred eecCCCeEeccCCcEEecCCCCCCCCCCCCHHHHHHHHHHHHHHHHHhh
Q psy10421 62 VVDPRLRVYGIQGLRVIDASIMPVLPGGHTVAPTYMIGEKGADMIKEDW 110 (120)
Q Consensus 62 VVD~~~rV~Gv~nLrVvDaSv~P~~~~~np~~t~~a~a~r~A~~i~~~~ 110 (120)
+||..++ ..+|+|++.-..-+ ......+.-|..+|+.|....
T Consensus 335 ~vd~~~~--s~~~vya~GD~~~~-----~~~~~A~~~g~~aa~~i~~~l 376 (493)
T 1y56_A 335 VLDEYHR--IKDGIYVAGSAVSI-----KPHYANYLEGKLVGAYILKEF 376 (493)
T ss_dssp CCCTTSE--EETTEEECSTTTCC-----CCHHHHHHHHHHHHHHHHHHT
T ss_pred ccccccC--cCCCEEEEeccCCc-----cCHHHHHHHHHHHHHHHHHHc
Confidence 3788888 88999999433321 235566777888888887654
Done!