RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10421
(120 letters)
>1gpe_A Protein (glucose oxidase); oxidoreductase(flavoprotein); HET: NAG
BMA MAN FAD; 1.80A {Penicillium amagasakiense} SCOP:
c.3.1.2 d.16.1.1
Length = 587
Score = 177 bits (452), Expect = 2e-54
Identities = 30/110 (27%), Positives = 44/110 (40%), Gaps = 4/110 (3%)
Query: 1 MSETEPFQSIGSKLVDRPIPGCKHLPFGSDEYWVCCVKHLTMQTHHQCGTCKMGPATDRT 60
++ + + +PG + + W V H +C M +
Sbjct: 478 LTSQGAMKEYFAG---ETLPGYNLVQNATLSQWSDYVLQNFRPNWHAVSSCSMMSR-ELG 533
Query: 61 AVVDPRLRVYGIQGLRVIDASIMPVLPGGHTVAPTYMIGEKGADMIKEDW 110
VVD +VYG QGLRVID SI P H + Y + K AD I +D+
Sbjct: 534 GVVDATAKVYGTQGLRVIDGSIPPTQVSSHVMTIFYGMALKVADAILDDY 583
>3qvp_A Glucose oxidase; oxidoreductase; HET: NAG BMA MAN FAD; 1.20A
{Aspergillus niger} PDB: 1gal_A* 1cf3_A* 3qvr_A*
Length = 583
Score = 168 bits (427), Expect = 7e-51
Identities = 36/110 (32%), Positives = 49/110 (44%), Gaps = 4/110 (3%)
Query: 1 MSETEPFQSIGSKLVDRPIPGCKHLPFGSDEYWVCCVKHLTMQTHHQCGTCKMGPATDRT 60
+S + Q+ + IPG W + + +H GTC M P +
Sbjct: 474 ISNSGAMQTYFAG---ETIPGDNLAYDADLSAWTEYIPYHFRPNYHGVGTCSMMPK-EMG 529
Query: 61 AVVDPRLRVYGIQGLRVIDASIMPVLPGGHTVAPTYMIGEKGADMIKEDW 110
VVD RVYG+QGLRVID SI P H + Y + K +D I ED+
Sbjct: 530 GVVDNAARVYGVQGLRVIDGSIPPTQMSSHVMTVFYAMALKISDAILEDY 579
>3fim_B ARYL-alcohol oxidase; AAO, lignin degradation, oxidoreductase,
flavoprotein; HET: FAD; 2.55A {Pleurotus eryngii}
Length = 566
Score = 164 bits (418), Expect = 1e-49
Identities = 34/109 (31%), Positives = 50/109 (45%), Gaps = 5/109 (4%)
Query: 1 MSETEPFQSIGSKLVDRPIPGCKHLPFGSDEYWVCCVKHLTMQTHHQCGTCKMGPATDRT 60
+ + + D P + D ++ H GT M P
Sbjct: 462 FLSGQAWADFVIRPFD---PRLRDP--TDDAAIESYIRDNANTIFHPVGTASMSPRGASW 516
Query: 61 AVVDPRLRVYGIQGLRVIDASIMPVLPGGHTVAPTYMIGEKGADMIKED 109
VVDP L+V G+ GLR++D SI+P P HT P Y++G++GAD+IK D
Sbjct: 517 GVVDPDLKVKGVDGLRIVDGSILPFAPNAHTQGPIYLVGKQGADLIKAD 565
>3q9t_A Choline dehydrogenase and related flavoproteins;
glucose-methanol-choline oxidoreductase family, formate
OXID formyl-FAD, oxidoreductase; HET: FAY; 2.24A
{Aspergillus oryzae}
Length = 577
Score = 161 bits (410), Expect = 2e-48
Identities = 35/110 (31%), Positives = 53/110 (48%), Gaps = 7/110 (6%)
Query: 1 MSETEPFQSIGSKLVDRPIPGCKHLPFGSDEYWVCCVKHLTMQTHHQCGTCKMGPATDRT 60
+ + E F+ + +P SD+ V H GT ++ D
Sbjct: 471 LFKGEGFKDLVESEYP---WE---MPLDSDKEMHRAVLDRCQTAFHPTGTARLSKNID-Q 523
Query: 61 AVVDPRLRVYGIQGLRVIDASIMPVLPGGHTVAPTYMIGEKGADMIKEDW 110
VVDP+L+V+GI+ LRV DAS++P++P Y +GEK ADMIK +
Sbjct: 524 GVVDPKLKVHGIKKLRVADASVIPIIPDCRIQNSVYAVGEKCADMIKAEH 573
>1ju2_A HydroxynitrIle lyase; flavin, GMC oxidoreductase, almond,
cyanogenesis; HET: NAG NDG FUC BMA MAN FAD; 1.47A
{Prunus dulcis} SCOP: c.3.1.2 d.16.1.1 PDB: 3gdp_A*
3gdn_A*
Length = 536
Score = 137 bits (347), Expect = 1e-39
Identities = 25/100 (25%), Positives = 33/100 (33%), Gaps = 8/100 (8%)
Query: 11 GSKLVDRPIPGCKHLPFGSDEYWVCCVKHLTMQTHHQCGTCKMGPATDRTAVVDPRLRVY 70
IP K D + + H G C +G V+D RV
Sbjct: 426 VEGFNILGIPLPKDQ--TDDAAFETFCRESVASYWHYHGGCLVG------KVLDGDFRVT 477
Query: 71 GIQGLRVIDASIMPVLPGGHTVAPTYMIGEKGADMIKEDW 110
GI LRV+D S P P H M+G I ++
Sbjct: 478 GINALRVVDGSTFPYTPASHPQGFYLMLGRYVGIKILQER 517
>2jbv_A Choline oxidase; alcohol oxidation, flavoenyzme oxidase, covalently
linked FAD, C4A-adduct, flavoprotein, oxidoreductase;
HET: FAO; 1.86A {Arthrobacter globiformis} PDB: 3nne_A*
3ljp_A*
Length = 546
Score = 137 bits (347), Expect = 2e-39
Identities = 30/82 (36%), Positives = 43/82 (52%)
Query: 29 SDEYWVCCVKHLTMQTHHQCGTCKMGPATDRTAVVDPRLRVYGIQGLRVIDASIMPVLPG 88
+DE ++ +H GT +MG D + +DP LRV G+ GLRV DAS+MP
Sbjct: 449 TDEELQDYIRKTHNTVYHPVGTVRMGAVEDEMSPLDPELRVKGVTGLRVADASVMPEHVT 508
Query: 89 GHTVAPTYMIGEKGADMIKEDW 110
+ MIGE+ AD+I+
Sbjct: 509 VNPNITVMMIGERCADLIRSAR 530
>3t37_A Probable dehydrogenase; BET alpha beta fold, ADP binding,
oxidoreductase; HET: FAD; 2.19A {Mesorhizobium loti}
Length = 526
Score = 132 bits (335), Expect = 6e-38
Identities = 29/65 (44%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Query: 45 HHQCGTCKMGPATDRTAVVDPRLRVYGIQGLRVIDASIMPVLPGGHTVAPTYMIGEKGAD 104
HH CGTC+MG D AVVD LR+ + L V+DASIMP L G A I E A
Sbjct: 461 HHPCGTCRMGK--DPDAVVDANLRLKALDNLFVVDASIMPNLTAGPIHAAVLAIAETFAR 518
Query: 105 MIKED 109
Sbjct: 519 QYHHH 523
>1kdg_A CDH, cellobiose dehydrogenase; GMC oxidoreductase, PHBH fold,
alpha/beta structure, rossman 6-hydroxylated FAD,
oxidoreductase; HET: NAG MAN 6FA EMT; 1.50A
{Phanerochaete chrysosporium} SCOP: c.3.1.2 d.16.1.1
PDB: 1naa_A*
Length = 546
Score = 127 bits (321), Expect = 7e-36
Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Query: 45 HHQCGTCKMGPATDRTAVVDPRLRVYGIQGLRVIDASIMPVLPGGHTVAPTYMIGEKGAD 104
+H + +G + ++AVVD ++V+G L ++DA I+P LP G+ E+ A
Sbjct: 479 NHWVSSTTIGSS-PQSAVVDSNVKVFGTNNLFIVDAGIIPHLPTGNPQGTLMSAAEQAAA 537
Query: 105 MIKED 109
I
Sbjct: 538 KILAL 542
>1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism,
oxidoreductase, atomic RESO; HET: FAD; 0.92A
{Streptomyces SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1b4v_A*
1n1p_A* 1n4u_A* 1n4v_A* 1mxt_A* 2gew_A* 1b8s_A* 3gyi_A*
1cc2_A* 3gyj_A* 1ijh_A* 1cbo_A* 3b3r_A* 3b6d_A* 3cnj_A*
Length = 504
Score = 68.9 bits (168), Expect = 4e-15
Identities = 16/63 (25%), Positives = 25/63 (39%), Gaps = 6/63 (9%)
Query: 44 THHQCGTCKMGPATDRTAVVDPRLRVYGIQGLRVIDASIMPVLPGGHTVAPTYMIGEKGA 103
+H G C +G D RV G + L V D S++P G + + E+
Sbjct: 440 CYHPLGGCVLG------KATDDYGRVAGYKNLYVTDGSLIPGSVGVNPFVTITALAERNV 493
Query: 104 DMI 106
+ I
Sbjct: 494 ERI 496
>3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer,
GMC oxidoredu PHBH fold, rossmann domain,
oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes
ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A*
2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A*
3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A*
3fdy_A* ...
Length = 623
Score = 59.8 bits (144), Expect = 6e-12
Identities = 16/72 (22%), Positives = 29/72 (40%), Gaps = 1/72 (1%)
Query: 43 QTHHQCGTCKMGP-ATDRTAVVDPRLRVYGIQGLRVIDASIMPVLPGGHTVAPTYMIGEK 101
H GT +MG + V+ RV+G + L + +P G + + K
Sbjct: 545 LVLHLGGTHRMGFDEKEDNCCVNTDSRVFGFKNLFLGGCGNIPTAYGANPTLTAMSLAIK 604
Query: 102 GADMIKEDWLPG 113
+ IK+++ P
Sbjct: 605 SCEYIKQNFTPS 616
>1coy_A Cholesterol oxidase; oxidoreductase(oxygen receptor); HET: AND FAD;
1.80A {Brevibacterium sterolicum} SCOP: c.3.1.2 d.16.1.1
PDB: 3cox_A*
Length = 507
Score = 54.0 bits (129), Expect = 7e-10
Identities = 15/63 (23%), Positives = 24/63 (38%), Gaps = 6/63 (9%)
Query: 44 THHQCGTCKMGPATDRTAVVDPRLRVYGIQGLRVIDASIMPVLPGGHTVAPTYMIGEKGA 103
T+H G + D R+ GL V+D S++P G + + E+
Sbjct: 445 TYHPLGGVLLN------KATDNFGRLPEYPGLYVVDGSLVPGNVGVNPFVTITALAERNM 498
Query: 104 DMI 106
D I
Sbjct: 499 DKI 501
>2zzd_A Thiocyanate hydrolase subunit alpha; scnase, cobalt,
metalloprotein, sulfenic acid, sulfinic acid, nitrIle
hydratase, carbonyl sulfide; HET: FRU TLA BGC; 1.78A
{Thiobacillus thioparus} PDB: 2dd4_A 2dxb_A 2dd5_A*
2dxc_A*
Length = 126
Score = 28.2 bits (63), Expect = 0.39
Identities = 10/49 (20%), Positives = 15/49 (30%), Gaps = 7/49 (14%)
Query: 54 GPATDRTAVVDPRLRVYGIQGLRVIDASIMPVLPGGHTVAPTYMIGEKG 102
P + + V G +R+ D +T TY G G
Sbjct: 24 DPQCFKGMAGKSKFNV-G-DRVRIKDLP-----DLFYTRTMTYTRGATG 65
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 27.6 bits (60), Expect = 0.80
Identities = 7/26 (26%), Positives = 10/26 (38%), Gaps = 3/26 (11%)
Query: 73 QGLRVIDASIMPVLPGGHTVAPTYMI 98
Q L+ + AS+ AP I
Sbjct: 20 QALKKLQASLKLYADDS---APALAI 42
>1pja_A Palmitoyl-protein thioesterase 2 precursor; hydrolase,
glycoprotein, lysosome; HET: NAG; 2.70A {Homo sapiens}
SCOP: c.69.1.13
Length = 302
Score = 27.1 bits (59), Expect = 1.3
Identities = 7/31 (22%), Positives = 12/31 (38%), Gaps = 2/31 (6%)
Query: 13 KLVDRPIPGCKHLPFGSDEYWV--CCVKHLT 41
+V P+ G H + S+ C L+
Sbjct: 272 AIVRCPMAGISHTAWHSNRTLYETCIEPWLS 302
>3dc8_A Dihydropyrimidinase; TIM-barrel, hydrolase; HET: KCX; 1.85A
{Sinorhizobium meliloti}
Length = 490
Score = 26.8 bits (60), Expect = 1.8
Identities = 9/24 (37%), Positives = 13/24 (54%), Gaps = 3/24 (12%)
Query: 71 GIQGLRVIDASIMPVLPGG---HT 91
+ G +DA+ V+PGG HT
Sbjct: 34 NLSGAETLDATGCYVMPGGIDPHT 57
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 26.9 bits (59), Expect = 1.9
Identities = 18/84 (21%), Positives = 26/84 (30%), Gaps = 33/84 (39%)
Query: 9 SIGSKLVD----RPIPGCKHLPFGSDEYWVCCVKHLTMQTHH-----QCGTCKMGPATDR 59
SI ++VD P+ W + + H G +G T R
Sbjct: 474 SISERIVDCIIRLPV------------KWETTTQ---FKATHILDFGPGGASGLGVLTHR 518
Query: 60 TAVVDPRLRVYGIQGLRVIDASIM 83
D G G+RVI A +
Sbjct: 519 --NKD------G-TGVRVIVAGTL 533
>2yib_D RNA-directed RNA polymerase; transferase, reverse transcriptase,
IPNV; 3.80A {Infectious pancreatic necrosis virus}
Length = 770
Score = 26.6 bits (57), Expect = 3.0
Identities = 15/67 (22%), Positives = 25/67 (37%), Gaps = 5/67 (7%)
Query: 56 ATDRTAVVDPRLRVYGIQGLRVIDASIMPVLPGGH-----TVAPTYMIGEKGADMIKEDW 110
AT R P+ Y + L + +P+ H AP+++I G + +
Sbjct: 178 ATGRNPNKTPKTVGYTNEQLAKLLEQTLPINTPKHEDPDLRWAPSWLINYTGDLSTDKSY 237
Query: 111 LPGYTPT 117
LP T
Sbjct: 238 LPHVTIK 244
>1xk7_A Crotonobetainyl-COA:carnitine COA-transferase; CAIB,
montreal-kingston bacterial structural genomics
initiative, BSGI, structural genomics; 1.60A
{Escherichia coli} SCOP: c.123.1.1 PDB: 1xk6_A 1xvt_A*
1xvu_A* 1xvv_A* 1xa3_A* 1xa4_A*
Length = 408
Score = 25.6 bits (57), Expect = 4.5
Identities = 12/37 (32%), Positives = 17/37 (45%), Gaps = 9/37 (24%)
Query: 73 QGLRVIDASIMPVLPGGHTVAP--TYMIGEKGADMIK 107
GLRV+ + I + G P M E GA++I
Sbjct: 16 AGLRVVFSGI--EIAG-----PFAGQMFAEWGAEVIW 45
>1gkp_A Hydantoinase; hydrolase, dihydropyrimidinase, cyclic amidase;
HET: KCX EPE; 1.29A {Thermus SP} SCOP: b.92.1.3 c.1.9.6
PDB: 1gkq_A*
Length = 458
Score = 25.6 bits (57), Expect = 4.9
Identities = 9/22 (40%), Positives = 10/22 (45%), Gaps = 3/22 (13%)
Query: 73 QGLRVIDASIMPVLPGG---HT 91
G VIDA+ V PG H
Sbjct: 38 PGTEVIDATGKYVFPGFIDPHV 59
>3sfw_A Dihydropyrimidinase; hydrolase, zinc binding; HET: KCX; 1.73A
{Brevibacillus agri} PDB: 1yny_A 1k1d_A*
Length = 461
Score = 25.2 bits (56), Expect = 5.9
Identities = 10/21 (47%), Positives = 12/21 (57%), Gaps = 3/21 (14%)
Query: 74 GLRVIDASIMPVLPGG---HT 91
VIDA+ +LPGG HT
Sbjct: 39 DAEVIDATGYYLLPGGIDPHT 59
>3isp_A HTH-type transcriptional regulator RV1985C/MT2039; ROD shaped
structure, DNA binding domain, regulatory domain,
DNA-binding; 2.70A {Mycobacterium tuberculosis}
Length = 303
Score = 25.3 bits (56), Expect = 6.5
Identities = 7/19 (36%), Positives = 9/19 (47%)
Query: 18 PIPGCKHLPFGSDEYWVCC 36
P+PGC+ P G Y
Sbjct: 151 PVPGCRVHPLGEMRYLPVA 169
>1nfg_A D-hydantoinase; TIM barrel, hydrolase; HET: KCX; 2.70A {Ralstonia
pickettii} SCOP: b.92.1.3 c.1.9.6
Length = 457
Score = 25.2 bits (56), Expect = 6.7
Identities = 10/21 (47%), Positives = 11/21 (52%), Gaps = 3/21 (14%)
Query: 74 GLRVIDASIMPVLPGG---HT 91
R IDA+ V PGG HT
Sbjct: 38 AERTIDAAGRYVFPGGIDVHT 58
>1vhc_A Putative KHG/KDPG aldolase; structural genomics, unknown function;
HET: MSE; 1.89A {Haemophilus influenzae} SCOP: c.1.10.1
Length = 224
Score = 25.2 bits (55), Expect = 7.1
Identities = 6/33 (18%), Positives = 13/33 (39%)
Query: 75 LRVIDASIMPVLPGGHTVAPTYMIGEKGADMIK 107
+++ P+ PG + + E G +K
Sbjct: 103 VKLCQDLNFPITPGVNNPMAIEIALEMGISAVK 135
>1gkr_A Hydantoinase, non-ATP dependent L-selective hydantoinase;
hydrolase, dihydropyrimidinase, cyclic amidase; HET:
KCX; 2.60A {Arthrobacter aurescens} SCOP: b.92.1.3
c.1.9.6
Length = 458
Score = 24.8 bits (55), Expect = 7.9
Identities = 8/24 (33%), Positives = 11/24 (45%), Gaps = 3/24 (12%)
Query: 71 GIQGLRVIDASIMPVLPGG---HT 91
++ R IDA V+PG H
Sbjct: 38 DVEASRTIDAGGKFVMPGVVDEHV 61
>3e0x_A Lipase-esterase related protein; APC60309, clostridium
acetobutylicum ATCC 824, structural genomics, PSI-2;
HET: MSE; 1.45A {Clostridium acetobutylicum}
Length = 245
Score = 24.6 bits (54), Expect = 8.6
Identities = 4/17 (23%), Positives = 5/17 (29%), Gaps = 2/17 (11%)
Query: 11 GSKLVDRPIPGCKHLPF 27
S+L KH
Sbjct: 216 NSELK--IFETGKHFLL 230
>4dgw_C PRE-mRNA-splicing factor PRP11; zinc finger; 3.11A {Saccharomyces
cerevisiae}
Length = 231
Score = 24.7 bits (53), Expect = 8.9
Identities = 7/30 (23%), Positives = 14/30 (46%)
Query: 5 EPFQSIGSKLVDRPIPGCKHLPFGSDEYWV 34
EPF++I +L I ++ ++ V
Sbjct: 169 EPFENIAIELPPNEILFSENNDMDNNNDGV 198
>2yw3_A 4-hydroxy-2-oxoglutarate aldolase/2-deydro-3- deoxyphosphogluconate
aldolase; structural genomics, NPPSFA; 1.67A {Thermus
thermophilus} PDB: 2yw4_A
Length = 207
Score = 24.4 bits (53), Expect = 9.7
Identities = 8/33 (24%), Positives = 11/33 (33%)
Query: 75 LRVIDASIMPVLPGGHTVAPTYMIGEKGADMIK 107
+ A +P LPG T G +K
Sbjct: 97 AALAQARGVPYLPGVLTPTEVERALALGLSALK 129
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.141 0.468
Gapped
Lambda K H
0.267 0.0798 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,974,956
Number of extensions: 105638
Number of successful extensions: 337
Number of sequences better than 10.0: 1
Number of HSP's gapped: 328
Number of HSP's successfully gapped: 43
Length of query: 120
Length of database: 6,701,793
Length adjustment: 82
Effective length of query: 38
Effective length of database: 4,412,271
Effective search space: 167666298
Effective search space used: 167666298
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (23.3 bits)