RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy10421
         (120 letters)



>d1cf3a1 c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Aspergillus
           niger [TaxId: 5061]}
          Length = 385

 Score = 84.9 bits (209), Expect = 2e-21
 Identities = 28/66 (42%), Positives = 34/66 (51%), Gaps = 1/66 (1%)

Query: 45  HHQCGTCKMGPATDRTAVVDPRLRVYGIQGLRVIDASIMPVLPGGHTVAPTYMIGEKGAD 104
               G C M P  +   VVD   RVYG+QGLRVID SI P     H +   Y +  K +D
Sbjct: 317 DLPVGLCSMMP-KEMGGVVDNAARVYGVQGLRVIDGSIPPTQMSSHVMTVFYAMALKISD 375

Query: 105 MIKEDW 110
            I ED+
Sbjct: 376 AILEDY 381


>d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of
           flavocytochrome cellobiose dehydrogenase (CDH),
           FAD-binding domain {Fungus (Phanerochaete chrysosporium)
           [TaxId: 5306]}
          Length = 360

 Score = 77.4 bits (189), Expect = 1e-18
 Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 1/65 (1%)

Query: 42  MQTHHQCGTCKMGPATDRTAVVDPRLRVYGIQGLRVIDASIMPVLPGGHTVAPTYMIGEK 101
              +   G   +G  + ++AVVD  ++V+G   L ++DA I+P LP G+         E+
Sbjct: 290 QWINLPVGMTTIGS-SPQSAVVDSNVKVFGTNNLFIVDAGIIPHLPTGNPQGTLMSAAEQ 348

Query: 102 GADMI 106
            A  I
Sbjct: 349 AAAKI 353


>d1gpea1 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penicillium
           amagasakiense [TaxId: 63559]}
          Length = 391

 Score = 71.1 bits (173), Expect = 3e-16
 Identities = 23/50 (46%), Positives = 28/50 (56%)

Query: 61  AVVDPRLRVYGIQGLRVIDASIMPVLPGGHTVAPTYMIGEKGADMIKEDW 110
            VVD   +VYG QGLRVID SI P     H +   Y +  K AD I +D+
Sbjct: 338 GVVDATAKVYGTQGLRVIDGSIPPTQVSSHVMTIFYGMALKVADAILDDY 387


>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot
           fungus (Peniophora sp. SG) [TaxId: 204723]}
          Length = 379

 Score = 65.0 bits (157), Expect = 3e-14
 Identities = 14/81 (17%), Positives = 28/81 (34%), Gaps = 4/81 (4%)

Query: 33  WVCCVKHLTMQTHHQCGTCKMGPATDRTAVVDPRLRVYGIQGLRVIDASIMPVLPGGHTV 92
                + L     H+ G  +          V+   RV+G + L +     +P   G +  
Sbjct: 300 PTNPPELLPSLGSHRMGFDEKE----DNCCVNTDSRVFGFKNLFLGGCGNIPTAYGANPT 355

Query: 93  APTYMIGEKGADMIKEDWLPG 113
                +  K  + IK+++ P 
Sbjct: 356 LTAMSLAIKSCEYIKQNFTPS 376


>d1gpea2 d.16.1.1 (A:329-524) Glucose oxidase {Penicillium
           amagasakiense [TaxId: 63559]}
          Length = 196

 Score = 40.9 bits (95), Expect = 6e-06
 Identities = 5/50 (10%), Positives = 12/50 (24%), Gaps = 3/50 (6%)

Query: 1   MSETEPFQSIGSKLVDRPIPGCKHLPFGSDEYWVCCVKHLTMQTHHQCGT 50
           ++     +          +PG   +   +   W   V        H   +
Sbjct: 150 LTSQGAMKEY---FAGETLPGYNLVQNATLSQWSDYVLQNFRPNWHAVSS 196


>d1cf3a2 d.16.1.1 (A:325-520) Glucose oxidase {Aspergillus niger
           [TaxId: 5061]}
          Length = 196

 Score = 39.7 bits (92), Expect = 2e-05
 Identities = 9/50 (18%), Positives = 15/50 (30%), Gaps = 3/50 (6%)

Query: 1   MSETEPFQSIGSKLVDRPIPGCKHLPFGSDEYWVCCVKHLTMQTHHQCGT 50
           +S +   Q+         IPG           W   + +     +H  GT
Sbjct: 150 ISNSGAMQTY---FAGETIPGDNLAYDADLSAWTEYIPYHFRPNYHGVGT 196


>d1ju2a2 d.16.1.1 (A:294-463) Hydroxynitrile lyase {Almond (Prunus
           dulcis) [TaxId: 3755]}
          Length = 170

 Score = 25.5 bits (55), Expect = 1.9
 Identities = 7/56 (12%), Positives = 12/56 (21%), Gaps = 9/56 (16%)

Query: 1   MSETEPFQSI-------GSKLVDRPIPGCKHLPFGSDEYWVCCVKHLTMQTHHQCG 49
           +  T+  +                 IP  K      D  +    +       H  G
Sbjct: 116 LLSTDALKPYKVEDLPGVEGFNILGIPLPKDQ--TDDAAFETFCRESVASYWHYHG 169


>d1i7qb_ c.23.16.1 (B:) Anthranilate synthase GAT subunit, TrpG
           {Serratia marcescens [TaxId: 615]}
          Length = 192

 Score = 23.7 bits (50), Expect = 7.4
 Identities = 10/58 (17%), Positives = 17/58 (29%), Gaps = 2/58 (3%)

Query: 18  PIPGCKHLPFGSDEYWVCCVKHLTMQTHHQCGTCKMGPATDRT--AVVDPRLRVYGIQ 73
            I       F      +   ++ ++   +      +         AV D R RV G Q
Sbjct: 110 AIAHDGEGMFAGMANPLPVARYHSLVGSNIPADLTVNARFGEMVMAVRDDRRRVCGFQ 167


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.323    0.141    0.468 

Gapped
Lambda     K      H
   0.267   0.0435    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 489,816
Number of extensions: 20659
Number of successful extensions: 59
Number of sequences better than 10.0: 1
Number of HSP's gapped: 58
Number of HSP's successfully gapped: 14
Length of query: 120
Length of database: 2,407,596
Length adjustment: 74
Effective length of query: 46
Effective length of database: 1,391,576
Effective search space: 64012496
Effective search space used: 64012496
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.6 bits)