Query psy10424
Match_columns 187
No_of_seqs 149 out of 956
Neff 5.7
Searched_HMMs 29240
Date Fri Aug 16 17:32:57 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10424.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/10424hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vf5_C Cytochrome F; photosynt 12.1 1.7E+02 0.0059 24.8 3.4 31 61-92 248-278 (289)
2 1s69_A Cyanoglobin, hemoglobin 10.3 4E+02 0.014 18.4 4.6 48 8-56 16-63 (124)
3 1dlw_A Hemoglobin; oxygen stor 9.3 4.6E+02 0.016 17.8 4.6 48 4-54 10-59 (116)
4 1q90_A Apocytochrome F; membra 8.1 2.5E+02 0.0087 23.8 3.0 31 61-92 245-275 (292)
5 2gkm_A TRHBN, hemoglobin-like 7.8 4.9E+02 0.017 18.5 4.3 49 7-56 26-74 (136)
6 1dly_A Hemoglobin; oxygen stor 7.2 5.5E+02 0.019 19.3 4.5 51 6-57 55-105 (164)
7 3aq9_A Group 1 truncated hemog 7.2 6.1E+02 0.021 17.4 4.7 45 8-53 19-63 (121)
8 2ks1_B Epidermal growth factor 7.0 4.4E+02 0.015 15.9 3.1 10 83-92 30-39 (44)
9 2bmm_A Thermostable hemoglobin 6.9 5.7E+02 0.019 17.5 4.2 48 6-54 13-60 (123)
10 4dkl_A MU-type opioid receptor 6.9 3.1E+02 0.01 22.4 3.1 16 125-140 427-442 (464)
No 1
>1vf5_C Cytochrome F; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} SCOP: b.2.6.1 b.84.2.2 f.23.23.1 PDB: 2d2c_C* 2e74_C* 2e75_C* 2e76_C* 2zt9_C*
Probab=12.06 E-value=1.7e+02 Score=24.78 Aligned_cols=31 Identities=19% Similarity=0.192 Sum_probs=22.0
Q ss_pred ccchhHHhHHHHHHHHHHHHHHHHHHHHhcCC
Q psy10424 61 QINRILMVYNLGQTLASLYVVSSVFFVLKKKQ 92 (187)
Q Consensus 61 ~L~~~~~~~N~~l~~~S~~~~~Tvf~VLRKK~ 92 (187)
-|.....+..++.-.++..++ -+|+||+||+
T Consensus 248 VLQ~p~Ri~gll~F~~~v~la-Qi~LVLKKKQ 278 (289)
T 1vf5_C 248 VLQDPNRVKWMIAFICLVMLA-QLMLILKKKQ 278 (289)
T ss_dssp EECCHHHHHHHHHHHHHHHHH-HHHHHHHTGG
T ss_pred EecCHHHHHHHHHHHHHHHHH-HHhheeehhh
Confidence 377777887776655554443 7899999985
No 2
>1s69_A Cyanoglobin, hemoglobin, HB; on 2 helical fold, heme, iron, cyanoba oxygen binding, hexacoordinate, truncated, oxygen storage-T complex; HET: FLC HEM; 1.68A {Synechocystis SP} SCOP: a.1.1.1 PDB: 1s6a_A* 1mwb_A* 1rtx_A* 2hz1_A* 2hz3_A* 2hz2_A*
Probab=10.30 E-value=4e+02 Score=18.45 Aligned_cols=48 Identities=10% Similarity=0.215 Sum_probs=27.7
Q ss_pred HHHHHHhhhhccCcccccccCccCchHHHHHHHhhhheeeecccccccC
Q psy10424 8 SRIEMLKNDIVEDEEVDSRFFMSSWVPVTVTLVAYLVFVLYIGPKWMAT 56 (187)
Q Consensus 8 ~~~~~~~~~~~~d~r~~~wpl~~s~~~~~~i~~~Yl~~V~~~g~~~M~~ 56 (187)
+-....|+.+..||+.+...=..++....--...++..+ ..||.-.+.
T Consensus 16 ~lv~~FY~~v~~dp~l~~~F~~~d~~~~~~~l~~fl~~~-~ggp~~y~g 63 (124)
T 1s69_A 16 LAVDKFYERVLQDDRIKHFFADVDMAKQRAHQKAFLTYA-FGGTDKYDG 63 (124)
T ss_dssp HHHHHHHHHHHTCTTTGGGGTTCCHHHHHHHHHHHHHHH-TTSSSCCSS
T ss_pred HHHHHHHHHHHcChHHHHHhCCCCHHHHHHHHHHHHHHH-hCCCCCCCC
Confidence 334555655558999885421123445556667777776 567765443
No 3
>1dlw_A Hemoglobin; oxygen storage/transport complex; HET: HEM; 1.54A {Paramecium caudatum} SCOP: a.1.1.1 PDB: 1uvy_A*
Probab=9.30 E-value=4.6e+02 Score=17.83 Aligned_cols=48 Identities=17% Similarity=0.151 Sum_probs=28.7
Q ss_pred HHHHHHHHHHhhhhccCcccccccCcc--CchHHHHHHHhhhheeeecccccc
Q psy10424 4 EMIMSRIEMLKNDIVEDEEVDSRFFMS--SWVPVTVTLVAYLVFVLYIGPKWM 54 (187)
Q Consensus 4 ~~i~~~~~~~~~~~~~d~r~~~wpl~~--s~~~~~~i~~~Yl~~V~~~g~~~M 54 (187)
|.|.+-+...|+.+..||+.+.. .. ++....--...++..+ .+||...
T Consensus 10 ~~i~~lv~~FY~~v~~dp~l~~~--F~~~d~~~~~~~l~~fl~~~-~gGp~~Y 59 (116)
T 1dlw_A 10 AAVQAVTAQFYANIQADATVATF--FNGIDMPNQTNKTAAFLCAA-LGGPNAW 59 (116)
T ss_dssp HHHHHHHHHHHHHHHTCTTTGGG--GTTCCHHHHHHHHHHHHHHH-TTCSSCC
T ss_pred HHHHHHHHHHHHHHHcCHHHHHh--cCCCCHHHHHHHHHHHHHHH-hCCCccC
Confidence 33444455666554589988844 43 3444555666777776 5677643
No 4
>1q90_A Apocytochrome F; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: b.2.6.1 b.84.2.2 f.23.23.1
Probab=8.09 E-value=2.5e+02 Score=23.78 Aligned_cols=31 Identities=26% Similarity=0.278 Sum_probs=22.0
Q ss_pred ccchhHHhHHHHHHHHHHHHHHHHHHHHhcCC
Q psy10424 61 QINRILMVYNLGQTLASLYVVSSVFFVLKKKQ 92 (187)
Q Consensus 61 ~L~~~~~~~N~~l~~~S~~~~~Tvf~VLRKK~ 92 (187)
-|.....+..++.-.++..++ -+|+||+||+
T Consensus 245 VLQ~p~Ri~gll~F~~~v~la-Qi~LVLKKKQ 275 (292)
T 1q90_A 245 VLQNPARIQGLLVFFSFVLLT-QVLLVLKKKQ 275 (292)
T ss_dssp EECCHHHHHHHHHHHHHHHHH-HHHHHHHHHH
T ss_pred EecCHHHHHHHHHHHHHHHHH-HHhheeehhh
Confidence 477777887776655554443 7899999985
No 5
>2gkm_A TRHBN, hemoglobin-like protein HBN, flavohemoglobin; truncated hemoglobin, mutant, oxygen storage/transport complex; HET: HEM; 1.73A {Mycobacterium tuberculosis} PDB: 1idr_A* 1rte_A* 1s56_A* 1s61_A* 2gl3_A* 2gln_A* 2gkn_A*
Probab=7.79 E-value=4.9e+02 Score=18.49 Aligned_cols=49 Identities=12% Similarity=0.138 Sum_probs=28.2
Q ss_pred HHHHHHHhhhhccCcccccccCccCchHHHHHHHhhhheeeecccccccC
Q psy10424 7 MSRIEMLKNDIVEDEEVDSRFFMSSWVPVTVTLVAYLVFVLYIGPKWMAT 56 (187)
Q Consensus 7 ~~~~~~~~~~~~~d~r~~~wpl~~s~~~~~~i~~~Yl~~V~~~g~~~M~~ 56 (187)
.+-+...|+.+..||+.+...=-.++....--...++..+ .+||.....
T Consensus 26 ~~lv~~FY~~v~~Dp~l~~~F~~~d~~~~~~~l~~Fl~~~-~GGp~~Y~g 74 (136)
T 2gkm_A 26 EVVVEDFFVRVLADDQLSAFFSGTNMSRLKGKQVEFFAAA-LGGPEPYTG 74 (136)
T ss_dssp HHHHHHHHHHHHHCTTTGGGGTTSCHHHHHHHHHHHHHHH-TTCSSCCCS
T ss_pred HHHHHHHHHHHHcCHHHHHhcCCCCHHHHHHHHHHHHHHH-HCCCCCCCC
Confidence 3334555554448998874421123444566677777777 668865543
No 6
>1dly_A Hemoglobin; oxygen storage/transport complex; HET: HEM; 1.80A {Chlamydomonas eugametos} SCOP: a.1.1.1 PDB: 1uvx_A*
Probab=7.25 E-value=5.5e+02 Score=19.28 Aligned_cols=51 Identities=18% Similarity=0.236 Sum_probs=30.0
Q ss_pred HHHHHHHHhhhhccCcccccccCccCchHHHHHHHhhhheeeecccccccCC
Q psy10424 6 IMSRIEMLKNDIVEDEEVDSRFFMSSWVPVTVTLVAYLVFVLYIGPKWMATR 57 (187)
Q Consensus 6 i~~~~~~~~~~~~~d~r~~~wpl~~s~~~~~~i~~~Yl~~V~~~g~~~M~~R 57 (187)
|..-+...|+.+..||+.....=-.++....--...++..+ .+||...+.+
T Consensus 55 I~~lVd~FY~rv~~Dp~l~~~F~~~D~~~~~~kl~~Fl~~~-lGGp~~Y~g~ 105 (164)
T 1dly_A 55 VEAAVDKFYNKIVADPTVSTYFSNTDMKVQRSKQFAFLAYA-LGGASEWKGK 105 (164)
T ss_dssp HHHHHHHHHHHHHTCTTTGGGGTTSCHHHHHHHHHHHHHHH-TTSSSCCCSC
T ss_pred HHHHHHHHHHHHHhChHHHHhcCCCCHHHHHHHHHHHHHHH-hCCCCCCCcC
Confidence 33334555544448998875422124545666677777777 6788765443
No 7
>3aq9_A Group 1 truncated hemoglobin; 2/2 fold hemoglobin, nitric oxide detoxification, oxygen BIN; HET: HEM; 1.74A {Tetrahymena pyriformis} PDB: 3aq5_A* 3aq6_A* 3aq8_A* 3aq7_A*
Probab=7.16 E-value=6.1e+02 Score=17.36 Aligned_cols=45 Identities=18% Similarity=0.284 Sum_probs=25.4
Q ss_pred HHHHHHhhhhccCcccccccCccCchHHHHHHHhhhheeeeccccc
Q psy10424 8 SRIEMLKNDIVEDEEVDSRFFMSSWVPVTVTLVAYLVFVLYIGPKW 53 (187)
Q Consensus 8 ~~~~~~~~~~~~d~r~~~wpl~~s~~~~~~i~~~Yl~~V~~~g~~~ 53 (187)
+-+...|+.+..||+.+...=-.++....--...++..+ .+||..
T Consensus 19 ~lv~~FY~~v~~dp~l~~~F~~~d~~~~~~~l~~fl~~~-~gGp~~ 63 (121)
T 3aq9_A 19 AAVPLFYKKVLADERVKHFFKNTDMDHQTKQETDFLTML-LGGPNH 63 (121)
T ss_dssp HHHHHHHHHHTTCTTTGGGGTTCCHHHHHHHHHHHHHHH-TTSCCC
T ss_pred HHHHHHHHHHHcCHHHHHhhCCCCHHHHHHHHHHHHHHH-hCCCCC
Confidence 334555544448998884421123444555666677666 567754
No 8
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=6.98 E-value=4.4e+02 Score=15.92 Aligned_cols=10 Identities=0% Similarity=0.418 Sum_probs=5.6
Q ss_pred HHHHHHhcCC
Q psy10424 83 SVFFVLKKKQ 92 (187)
Q Consensus 83 Tvf~VLRKK~ 92 (187)
.+++.+|+|.
T Consensus 30 ~~~~~~RRr~ 39 (44)
T 2ks1_B 30 GIGLFMRRRH 39 (44)
T ss_dssp HHHHHHHTTT
T ss_pred HHHHHhhhhH
Confidence 4555666654
No 9
>2bmm_A Thermostable hemoglobin from thermobifida fusca; bacterial hemoglobin, thermostable protein, oxygen storage/transport; HET: HEM; 2.48A {Thermobifida fusca}
Probab=6.89 E-value=5.7e+02 Score=17.54 Aligned_cols=48 Identities=13% Similarity=0.173 Sum_probs=26.9
Q ss_pred HHHHHHHHhhhhccCcccccccCccCchHHHHHHHhhhheeeecccccc
Q psy10424 6 IMSRIEMLKNDIVEDEEVDSRFFMSSWVPVTVTLVAYLVFVLYIGPKWM 54 (187)
Q Consensus 6 i~~~~~~~~~~~~~d~r~~~wpl~~s~~~~~~i~~~Yl~~V~~~g~~~M 54 (187)
|..-+...|+.+..||+.+.-.=-+++....--...++..+ .+||...
T Consensus 13 i~~lv~~FY~~v~~dp~l~~~F~~~d~~~~~~~l~~fl~~~-~gGp~~Y 60 (123)
T 2bmm_A 13 FTRLARRFYEGVAADPVLRPMYPEEDLGPAEERLRLFLMQY-WGGPRTY 60 (123)
T ss_dssp HHHHHHHHHHHHHTCTTTGGGSCCSCCHHHHHHHHHHHHHH-HTSCCHH
T ss_pred HHHHHHHHHHHHHhCHHHHHhcCCCCHHHHHHHHHHHHHHH-cCCCccc
Confidence 33334555555448998874311133445555666777666 5677644
No 10
>4dkl_A MU-type opioid receptor, lysozyme chimera; G-protein coupled receptor, 7 transmembrane receptor, signal protein-antagonist complex; HET: BF0 CLR MPG 1PE; 2.80A {Mus musculus} PDB: 4ej4_A* 4djh_A*
Probab=6.87 E-value=3.1e+02 Score=22.41 Aligned_cols=16 Identities=25% Similarity=0.681 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHH
Q psy10424 125 LGALNCLVHAIMYSYY 140 (187)
Q Consensus 125 ~~~~Ns~VH~iMY~YY 140 (187)
.+.+|+.++|+.|++.
T Consensus 427 L~~~ns~~NPiIY~~~ 442 (464)
T 4dkl_A 427 LGYTNSCLNPVLYAFL 442 (464)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHhhhchhHHHHHHh
Confidence 6688999999999875
Done!