Query psy10424
Match_columns 187
No_of_seqs 149 out of 956
Neff 5.7
Searched_HMMs 13730
Date Fri Aug 16 17:33:10 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10424.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/10424hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1vf5c3 f.23.23.1 (C:250-286) 30.3 21 0.0015 20.0 2.7 10 83-92 20-29 (37)
2 d1dlya_ a.1.1.1 (A:) Protozoan 27.5 42 0.003 21.7 4.6 50 4-54 10-59 (121)
3 d1q90a3 f.23.23.1 (A:248-292) 22.8 27 0.002 20.3 2.3 10 83-92 19-28 (45)
4 d1dlwa_ a.1.1.1 (A:) Protozoan 19.0 78 0.0057 20.3 4.6 51 4-55 10-60 (116)
5 d3dtub2 f.17.2.1 (B:30-129) Ba 18.3 68 0.0049 20.6 4.1 54 62-115 22-79 (100)
6 d1s69a_ a.1.1.1 (A:) Protozoan 16.1 99 0.0072 20.0 4.6 49 6-55 13-61 (123)
7 d1idra_ a.1.1.1 (A:) Protozoan 15.0 95 0.0069 20.4 4.3 50 6-56 24-73 (127)
8 d1ngka_ a.1.1.1 (A:) Protozoan 6.6 1.4E+02 0.01 19.2 2.5 48 4-52 11-58 (126)
9 d2axtl1 f.23.31.1 (L:1-37) Pho 6.5 2.2E+02 0.016 15.3 4.4 21 55-75 5-25 (37)
10 d1tuba2 d.79.2.1 (A:246-440) T 4.4 59 0.0043 23.4 -0.9 15 85-102 150-164 (195)
No 1
>d1vf5c3 f.23.23.1 (C:250-286) Cytochrome f subunit of the cytochrome b6f complex, transmembrane anchor {Mastigocladus laminosus [TaxId: 83541]}
Probab=30.31 E-value=21 Score=19.97 Aligned_cols=10 Identities=50% Similarity=0.833 Sum_probs=8.6
Q ss_pred HHHHHHhcCC
Q psy10424 83 SVFFVLKKKQ 92 (187)
Q Consensus 83 Tvf~VLRKK~ 92 (187)
-+++||+||+
T Consensus 20 Qi~lVlKKKQ 29 (37)
T d1vf5c3 20 QLMLILKKKQ 29 (37)
T ss_dssp HHHHHHHTGG
T ss_pred HHHHHHHHHH
Confidence 7889999985
No 2
>d1dlya_ a.1.1.1 (A:) Protozoan/bacterial hemoglobin {Green alga (Chlamydomonas eugametos) [TaxId: 3054]}
Probab=27.55 E-value=42 Score=21.68 Aligned_cols=50 Identities=20% Similarity=0.252 Sum_probs=30.6
Q ss_pred HHHHHHHHHHhhhhccCcccccccCccCchHHHHHHHhhhheeeecccccc
Q psy10424 4 EMIMSRIEMLKNDIVEDEEVDSRFFMSSWVPVTVTLVAYLVFVLYIGPKWM 54 (187)
Q Consensus 4 ~~i~~~~~~~~~~~~~d~r~~~wpl~~s~~~~~~i~~~Yl~~V~~~g~~~M 54 (187)
|.|.+.+...|+...+||+...++-..+......-...++..+ ..||..-
T Consensus 10 ~~i~~lv~~FY~~i~~d~~l~~~F~~~d~~~~~~~~~~f~~~~-~GGp~~Y 59 (121)
T d1dlya_ 10 EAVEAAVDKFYNKIVADPTVSTYFSNTDMKVQRSKQFAFLAYA-LGGASEW 59 (121)
T ss_dssp HHHHHHHHHHHHHHHTCTTTGGGGTTSCHHHHHHHHHHHHHHH-TTSSSCC
T ss_pred HHHHHHHHHHHHHHHcCHHHHHhCCCCCHHHHHHHHHHHHHHH-hCCCccc
Confidence 3444555666666669999987743334444455566677776 5676543
No 3
>d1q90a3 f.23.23.1 (A:248-292) Cytochrome f subunit of the cytochrome b6f complex, transmembrane anchor {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=22.76 E-value=27 Score=20.28 Aligned_cols=10 Identities=70% Similarity=0.909 Sum_probs=8.7
Q ss_pred HHHHHHhcCC
Q psy10424 83 SVFFVLKKKQ 92 (187)
Q Consensus 83 Tvf~VLRKK~ 92 (187)
-+|+||+||+
T Consensus 19 Qi~LVLKKKQ 28 (45)
T d1q90a3 19 QVLLVLKKKQ 28 (45)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7889999985
No 4
>d1dlwa_ a.1.1.1 (A:) Protozoan/bacterial hemoglobin {Ciliate (Paramecium caudatum) [TaxId: 5885]}
Probab=18.97 E-value=78 Score=20.28 Aligned_cols=51 Identities=18% Similarity=0.120 Sum_probs=31.1
Q ss_pred HHHHHHHHHHhhhhccCcccccccCccCchHHHHHHHhhhheeeeccccccc
Q psy10424 4 EMIMSRIEMLKNDIVEDEEVDSRFFMSSWVPVTVTLVAYLVFVLYIGPKWMA 55 (187)
Q Consensus 4 ~~i~~~~~~~~~~~~~d~r~~~wpl~~s~~~~~~i~~~Yl~~V~~~g~~~M~ 55 (187)
|.|...+...|+.+.+||+.....--.+..-...-...|+..+ .+||..-+
T Consensus 10 ~~I~~lv~~fY~~i~~d~~l~~~F~~~d~~~~~~~~~~fl~~~-~GGp~~Y~ 60 (116)
T d1dlwa_ 10 AAVQAVTAQFYANIQADATVATFFNGIDMPNQTNKTAAFLCAA-LGGPNAWT 60 (116)
T ss_dssp HHHHHHHHHHHHHHHTCTTTGGGGTTCCHHHHHHHHHHHHHHH-TTCSSCCC
T ss_pred HHHHHHHHHHHHHHHcCHHHHHhcCCCCHHHHHHHHHHHHHHH-cCCCCCCC
Confidence 4455556677766669999886632223344445567777777 56776443
No 5
>d3dtub2 f.17.2.1 (B:30-129) Bacterial aa3 type cytochrome c oxidase subunit II {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=18.30 E-value=68 Score=20.65 Aligned_cols=54 Identities=9% Similarity=0.158 Sum_probs=32.8
Q ss_pred cchhHHhHHHHHHHHHHHHHH----HHHHHHhcCCCceeEEeeecchhhhhhhhhhcc
Q psy10424 62 INRILMVYNLGQTLASLYVVS----SVFFVLKKKQSHITFLHVYHHAAMLLTSWAYLR 115 (187)
Q Consensus 62 L~~~~~~~N~~l~~~S~~~~~----Tvf~VLRKK~~qvsfLHvYHH~~~~~~~w~~~~ 115 (187)
-+...-+||..+.+..+..+. -+.++.|+|.++-..-+-+||...+-..|-...
T Consensus 22 a~~i~~l~~~v~~i~~~I~~~V~~~l~~~~~~~r~~~~~~~~~~~~n~~LEiiWTviP 79 (100)
T d3dtub2 22 ATQIHWLDGFILVIIAAITIFVTLLILYAVWRFHEKRNKVPARFTHNSPLEIAWTIVP 79 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTTCCSCCCCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCccccCcchHHHHHHHHH
Confidence 456677888877665443333 233444443333345566799988888888653
No 6
>d1s69a_ a.1.1.1 (A:) Protozoan/bacterial hemoglobin {Cyanobacteria (Synechocystis sp.), pcc 6803 [TaxId: 1143]}
Probab=16.09 E-value=99 Score=20.00 Aligned_cols=49 Identities=10% Similarity=0.219 Sum_probs=29.0
Q ss_pred HHHHHHHHhhhhccCcccccccCccCchHHHHHHHhhhheeeeccccccc
Q psy10424 6 IMSRIEMLKNDIVEDEEVDSRFFMSSWVPVTVTLVAYLVFVLYIGPKWMA 55 (187)
Q Consensus 6 i~~~~~~~~~~~~~d~r~~~wpl~~s~~~~~~i~~~Yl~~V~~~g~~~M~ 55 (187)
|.+.+.+.|+....||+....+--.++...-.-...|+.-+ .+||..-+
T Consensus 13 i~~lv~~FY~~i~~d~~l~~~F~~~d~~~~~~~~~~Fl~~~-~GGp~~Y~ 61 (123)
T d1s69a_ 13 VDLAVDKFYERVLQDDRIKHFFADVDMAKQRAHQKAFLTYA-FGGTDKYD 61 (123)
T ss_dssp HHHHHHHHHHHHHTCTTTGGGGTTCCHHHHHHHHHHHHHHH-TTSSSCCS
T ss_pred HHHHHHHHHHHHHcCHHHHHhcCcCCHHHHHHHHHHHHHHH-cCcCCCCC
Confidence 33445566655558998886633223444455666677777 67876543
No 7
>d1idra_ a.1.1.1 (A:) Protozoan/bacterial hemoglobin {Mycobacterium tuberculosis, HbN [TaxId: 1773]}
Probab=15.02 E-value=95 Score=20.36 Aligned_cols=50 Identities=14% Similarity=0.170 Sum_probs=29.5
Q ss_pred HHHHHHHHhhhhccCcccccccCccCchHHHHHHHhhhheeeecccccccC
Q psy10424 6 IMSRIEMLKNDIVEDEEVDSRFFMSSWVPVTVTLVAYLVFVLYIGPKWMAT 56 (187)
Q Consensus 6 i~~~~~~~~~~~~~d~r~~~wpl~~s~~~~~~i~~~Yl~~V~~~g~~~M~~ 56 (187)
|.+.+.+.|+....||+.....--.+....-.-...|+..+ .+||..-+.
T Consensus 24 I~~lv~~FY~~i~~d~~l~~~F~~~d~~~~~~~~~~fl~~~-~GGp~~Y~g 73 (127)
T d1idra_ 24 IEVVVEDFYVRVLADDQLSAFFSGTNMSRLKGKQVEFFAAA-LGGPEPYTG 73 (127)
T ss_dssp HHHHHHHHHHHHHHCTTTGGGGTTCCHHHHHHHHHHHHHHH-TTCSCCCCS
T ss_pred HHHHHHHHHHHHHcChHHHHhcCCCCHHHHHHHHHHHHHHH-hCcCCCCCC
Confidence 44445566655558999886632222333444567777777 668765443
No 8
>d1ngka_ a.1.1.1 (A:) Protozoan/bacterial hemoglobin {Mycobacterium tuberculosis, HbO [TaxId: 1773]}
Probab=6.63 E-value=1.4e+02 Score=19.17 Aligned_cols=48 Identities=15% Similarity=0.205 Sum_probs=25.3
Q ss_pred HHHHHHHHHHhhhhccCcccccccCccCchHHHHHHHhhhheeeecccc
Q psy10424 4 EMIMSRIEMLKNDIVEDEEVDSRFFMSSWVPVTVTLVAYLVFVLYIGPK 52 (187)
Q Consensus 4 ~~i~~~~~~~~~~~~~d~r~~~wpl~~s~~~~~~i~~~Yl~~V~~~g~~ 52 (187)
|.|.+-+.+.|+....||+.....-..+....-.-...++... ..||.
T Consensus 11 ~~I~~lV~~FY~~v~~D~~l~~~F~~~d~~~~~~~~~~f~~~~-~gGp~ 58 (126)
T d1ngka_ 11 KTFDAIVSRFYAQVAEDEVLRRVYPEDDLAGAEERLRMFLEQY-WGGPR 58 (126)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHSCSSCTHHHHHHHHHHHHHH-TTSCS
T ss_pred HHHHHHHHHHHHHHHhChhHHhhcCCCCHHHHHHHHHHHHHHH-hhccc
Confidence 3444455666655558888765432222333333444555555 55664
No 9
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=6.51 E-value=2.2e+02 Score=15.33 Aligned_cols=21 Identities=29% Similarity=0.453 Sum_probs=17.0
Q ss_pred cCCCCcccchhHHhHHHHHHH
Q psy10424 55 ATRKPFQINRILMVYNLGQTL 75 (187)
Q Consensus 55 ~~Rkp~~L~~~~~~~N~~l~~ 75 (187)
.|++|.+|.+-...|-+.++.
T Consensus 5 pn~q~veLNrtsLy~GlLlif 25 (37)
T d2axtl1 5 PNRQPVELNRTSLYLGLLLIL 25 (37)
T ss_dssp SSCCCBCCCHHHHHHHHHHHH
T ss_pred CCCCccccchhhHHHHHHHHH
Confidence 478899999998888887654
No 10
>d1tuba2 d.79.2.1 (A:246-440) Tubulin alpha-subunit {Pig (Sus scrofa) [TaxId: 9823]}
Probab=4.42 E-value=59 Score=23.41 Aligned_cols=15 Identities=33% Similarity=0.620 Sum_probs=10.5
Q ss_pred HHHHhcCCCceeEEeeec
Q psy10424 85 FFVLKKKQSHITFLHVYH 102 (187)
Q Consensus 85 f~VLRKK~~qvsfLHvYH 102 (187)
|=-|.||+ .|||||=
T Consensus 150 Fdkl~~rk---Aflh~Y~ 164 (195)
T d1tuba2 150 FDLMYAKR---AFVHWYV 164 (195)
T ss_dssp HHHHTTTT---CCTTTGG
T ss_pred HHHHHhhc---hHHHHhc
Confidence 44566666 8999883
Done!