RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy10424
(187 letters)
>gnl|CDD|216332 pfam01151, ELO, GNS1/SUR4 family. Members of this family are
involved in long chain fatty acid elongation systems
that produce the 26-carbon precursors for ceramide and
sphingolipid synthesis. Predicted to be integral
membrane proteins, in eukaryotes they are probably
located on the endoplasmic reticulum. Yeast ELO3 affects
plasma membrane H+-ATPase activity, and may act on a
glucose-signaling pathway that controls the expression
of several genes that are transcriptionally regulated by
glucose such as PMA1.
Length = 244
Score = 145 bits (367), Expect = 1e-43
Identities = 71/187 (37%), Positives = 93/187 (49%), Gaps = 50/187 (26%)
Query: 27 FFMSSWVPVTVTLVAYLVFVLYIGPKWMATRKPFQINRILMVYNLGQTLASLYVVS---- 82
+SS PV + +V YLVFV ++GPK M RKPF + R+L+V+NL L SLY
Sbjct: 1 PLLSSPWPVILIIVLYLVFV-FLGPKIMRNRKPFDLKRLLIVHNLFLVLLSLYGFYGLLA 59
Query: 83 --------------------------------------------SVFFVLKKKQSHITFL 98
+VF VL+KKQ ++FL
Sbjct: 60 GAGWGRGLYLALCVCYSFDPGAIRMGLVGFWYWLFLSKFLELLDTVFLVLRKKQRQLSFL 119
Query: 99 HVYHHAAMLLTSWAYLRFIKGEQVIFLGALNCLVHAIMYSYYFFASFGPKAQKYLWWKKY 158
HVYHHA MLL SW L++ G F+ LN VH IMY YYF A+ G + +WWKKY
Sbjct: 120 HVYHHATMLLYSWLGLKYGPGGHFWFIALLNSFVHVIMYFYYFLAALGAR-GLPVWWKKY 178
Query: 159 ITKLQMV 165
IT+LQ++
Sbjct: 179 ITQLQII 185
>gnl|CDD|140278 PTZ00251, PTZ00251, fatty acid elongase; Provisional.
Length = 272
Score = 40.6 bits (95), Expect = 2e-04
Identities = 25/83 (30%), Positives = 43/83 (51%), Gaps = 6/83 (7%)
Query: 83 SVFFVLKKKQSHITFLHVYHHAAMLLTSWAYLRFIKGEQV-IFLGALNCLVHAIMYSYYF 141
+ F ++ K+ + FL +HH + L +W + + +G + I A+N VH+IMY Y+
Sbjct: 129 TFFLIMGGKK--LPFLSWFHHVTIFLYAW--MSYQQGSSIWICAAAMNYFVHSIMYFYFA 184
Query: 142 FASFGPKAQKYLWWKKYITKLQM 164
+ G K + YIT LQ+
Sbjct: 185 LSEAGFKKLVKP-FAMYITLLQI 206
>gnl|CDD|204515 pfam10563, CdCA1, Cadmium carbonic anhydrase repeat. This domain
is the cadmium carbonic anhydrase repeat unit of the
beta-carbonic anhydrase of a marine diatom, that uses
both zinc and cadmium for catalysis of the reversible
hydration of carbon dioxide for use in inorganic carbon
acquisition for photosynthesis (thus being a
cambialistic enzyme). Compared with alpha- and
gamma-carbonic anhydrases that use three histidines to
coordinate the zinc-atom, this beta-carbonic anhydrase
has two cysteines and one histidine, and rapidly binds
cadmium.
Length = 185
Score = 30.5 bits (69), Expect = 0.36
Identities = 6/27 (22%), Positives = 12/27 (44%)
Query: 10 IEMLKNDIVEDEEVDSRFFMSSWVPVT 36
+++ VE E F + +W P+
Sbjct: 145 PNLIRGMTVEPNEDRQNFIVDAWAPIK 171
>gnl|CDD|153067 cd03597, CLECT_attractin_like, C-type lectin-like domain (CTLD) of
the type found in human and mouse attractin (AtrN) and
attractin-like protein (ALP). CLECT_attractin_like:
C-type lectin-like domain (CTLD) of the type found in
human and mouse attractin (AtrN) and attractin-like
protein (ALP). CTLD refers to a domain homologous to
the carbohydrate-recognition domains (CRDs) of the
C-type lectins. Mouse AtrN (the product of the mahogany
gene) has been shown to bind Agouti protein and to
function in agouti-induced pigmentation and obesity.
Mutations in AtrN have also been shown to cause
spongiform encephalopathy and hypomyelination in rats
and hamsters. The cytoplasmic region of mouse ALP has
been shown to binds to melanocortin receptor (MCR4).
Signaling through MCR4 plays a role in appetite
suppression. Attractin may have therapeutic potential
in the treatment of obesity. Human attractin (hAtrN)
has been shown to be expressed on activated T cells and
released extracellularly. The circulating serum
attractin induces the spreading of monocytes that become
the focus of the clustering of non-proliferating T
cells.
Length = 129
Score = 27.9 bits (62), Expect = 2.0
Identities = 23/66 (34%), Positives = 26/66 (39%), Gaps = 8/66 (12%)
Query: 52 KWMATRKPFQINRILMVYNLGQTLASLYVVSSVFFVLKKKQSHITFLHVYHHAAMLLTSW 111
K R+ + N L NL LASL V FVLK+ Q H LT W
Sbjct: 14 KINTARESYD-NAKLYCRNLNAVLASLTTQKKVEFVLKELQKH-------QMTKQKLTPW 65
Query: 112 AYLRFI 117
LR I
Sbjct: 66 VGLRKI 71
>gnl|CDD|215608 PLN03159, PLN03159, cation/H(+) antiporter 15; Provisional.
Length = 832
Score = 28.3 bits (63), Expect = 2.6
Identities = 17/53 (32%), Positives = 23/53 (43%), Gaps = 8/53 (15%)
Query: 22 EVDSRFFMSSWVPVT-VTLVAYLVFVLYIGPKWMATRKP-------FQINRIL 66
E DS S WV ++ V V + +V+ G W+ R P F I IL
Sbjct: 226 ENDSTSLASLWVLLSSVAFVLFCFYVVRPGIWWIIRRTPEGETFSEFYICLIL 278
>gnl|CDD|179537 PRK03095, prsA, peptidylprolyl isomerase; Reviewed.
Length = 287
Score = 28.0 bits (62), Expect = 2.9
Identities = 11/27 (40%), Positives = 21/27 (77%), Gaps = 1/27 (3%)
Query: 1 MLSEMIMSRIEMLKNDIVEDEEVDSRF 27
+L+ M+M ++ ++KN VED+EVD ++
Sbjct: 52 VLNNMVMEKV-LIKNYKVEDKEVDKKY 77
>gnl|CDD|183737 PRK12773, flhB, flagellar biosynthesis protein FlhB; Reviewed.
Length = 646
Score = 27.7 bits (61), Expect = 4.4
Identities = 9/30 (30%), Positives = 19/30 (63%)
Query: 129 NCLVHAIMYSYYFFASFGPKAQKYLWWKKY 158
+ V +++ +Y F FG + K+++WK+Y
Sbjct: 44 DSFVKSVLDVFYRFMLFGKRFGKFIFWKQY 73
>gnl|CDD|176532 cd08590, PI-PLCc_Rv2075c_like, Catalytic domain of uncharacterized
Mycobacterium tuberculosis Rv2075c-like proteins. This
subfamily corresponds to the catalytic domain present in
uncharacterized Mycobacterium tuberculosis Rv2075c and
its homologs. Members in this family are more closely
related to the Streptomyces antibioticus
phosphatidylinositol-specific phospholipase
C1(SaPLC1)-like proteins rather than the typical
bacterial phosphatidylinositol-specific phospholipase C
(PI-PLC, EC 4.6.1.13), which participate in
Ca2+-independent PI metabolism, hydrolyzing the membrane
lipid phosphatidylinositol (PI) to produce
phosphorylated myo-inositol and diacylglycerol (DAG). In
contrast, SaPLC1-like proteins have two Ca2+-chelating
amino acid substitutions which convert them to
metal-dependent bacterial PI-PLC. Rv2075c and its
homologs have the same amino acid substitutions as well,
which might suggest they have metal-dependent PI-PLC
activity.
Length = 267
Score = 27.4 bits (61), Expect = 4.7
Identities = 9/29 (31%), Positives = 12/29 (41%)
Query: 119 GEQVIFLGALNCLVHAIMYSYYFFASFGP 147
G+QV+ C MY+ FA P
Sbjct: 162 GKQVVLATGGGCSGAQGMYNRKEFADTQP 190
>gnl|CDD|235083 PRK02889, tolB, translocation protein TolB; Provisional.
Length = 427
Score = 26.9 bits (60), Expect = 7.0
Identities = 14/28 (50%), Positives = 15/28 (53%), Gaps = 3/28 (10%)
Query: 160 TKLQMVSTEVKNLVVRRAWVQSLATRTR 187
TKL VS E K VV +V LAT R
Sbjct: 208 TKLAYVSFESKKPVV---YVHDLATGRR 232
>gnl|CDD|216439 pfam01333, Apocytochr_F_C, Apocytochrome F, C-terminal. This is a
sub-family of cytochrome C. See pfam00034.
Length = 118
Score = 26.0 bits (58), Expect = 7.7
Identities = 7/9 (77%), Positives = 8/9 (88%)
Query: 84 VFFVLKKKQ 92
+F VLKKKQ
Sbjct: 99 IFLVLKKKQ 107
>gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter.
Length = 449
Score = 26.5 bits (59), Expect = 9.6
Identities = 12/74 (16%), Positives = 22/74 (29%), Gaps = 11/74 (14%)
Query: 19 EDEEVDSRFFMSSWVPVTVTLVAYLVF--------VLYIGPKWMAT---RKPFQINRILM 67
E F + + V +F + Y P T + I+
Sbjct: 237 EKASWLELFRGKTVRQRLLMGVMLQIFQQLTGINAIFYYSPTIFETLGLSDSLLVTIIVG 296
Query: 68 VYNLGQTLASLYVV 81
V N T ++++V
Sbjct: 297 VVNFVFTFIAIFLV 310
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.329 0.137 0.424
Gapped
Lambda K H
0.267 0.0765 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 9,573,465
Number of extensions: 872887
Number of successful extensions: 1085
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1081
Number of HSP's successfully gapped: 43
Length of query: 187
Length of database: 10,937,602
Length adjustment: 91
Effective length of query: 96
Effective length of database: 6,901,388
Effective search space: 662533248
Effective search space used: 662533248
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 56 (25.3 bits)