RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy10424
         (187 letters)



>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
            acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
            synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 39.3 bits (91), Expect = 4e-04
 Identities = 26/136 (19%), Positives = 42/136 (30%), Gaps = 45/136 (33%)

Query: 16   DIVEDEEVDSRFFMSSWVPVTVTLVAYLVFVLYIGPKWMATRKPFQINRILMVYNLGQTL 75
            DIV +             PV +T       + + G K    R+    N   M++     +
Sbjct: 1663 DIVINN------------PVNLT-------IHFGGEKGKRIRE----NYSAMIFE--TIV 1697

Query: 76   ASLYVVSSVFFVLKKKQSHITF------LHVYHHA--AMLLTSWAYLRFIKGEQVI---- 123
                    +F  + +  +  TF      L        A+ L   A    +K + +I    
Sbjct: 1698 DGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADA 1757

Query: 124  -F----LG---ALNCL 131
             F    LG   AL  L
Sbjct: 1758 TFAGHSLGEYAALASL 1773


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 35.2 bits (80), Expect = 0.011
 Identities = 27/152 (17%), Positives = 48/152 (31%), Gaps = 38/152 (25%)

Query: 2   LSEMIMSRIEMLKNDIVEDEEVDSRF-----FM-SSWVPVTVTLVAYLVFVLYIGPKW-- 53
           L+ +I S + +L     E  E    F     F  S+ +P T+ L             W  
Sbjct: 355 LTTIIESSLNVL-----EPAEYRKMFDRLSVFPPSAHIP-TILLSLI----------WFD 398

Query: 54  MATRKPFQINRILMVYNL--GQTLASLYVVSSVFFVLKKKQSHITFLHVYHHAAMLLTSW 111
           +       +   L  Y+L   Q   S   + S++  LK K  +   LH       ++  +
Sbjct: 399 VIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALH-----RSIVDHY 453

Query: 112 AYLRFIKGEQVIFLGALNCLVHAIMYSYYFFA 143
              +    + +I         +   Y Y    
Sbjct: 454 NIPKTFDSDDLI-------PPYLDQYFYSHIG 478


>2hp0_A IDS-epimerase; MMGE/PRPD fold, 6 helix bundle, chorismate mutase
           like, ISOM; HET: MSE CSO; 1.50A {Agrobacterium
           tumefaciens} PDB: 2hp3_A*
          Length = 466

 Score = 28.1 bits (63), Expect = 1.9
 Identities = 2/34 (5%), Positives = 9/34 (26%), Gaps = 5/34 (14%)

Query: 6   IMSRIEMLKNDIVEDEEVDSRFFMSSWVPVTVTL 39
            M ++        +     +    + +  + V  
Sbjct: 376 AMKKVTR-----FDMPSETTFSGTTGYTDIVVHT 404


>3ajr_A NDP-sugar epimerase; L-threonine dehydrogenase, L-3-
           hydroxynorvaline, oxidoreductase; HET: NAD; 1.77A
           {Thermoplasma volcanium} PDB: 3a9w_A* 3a4v_A* 3a1n_A*
          Length = 317

 Score = 26.1 bits (58), Expect = 7.4
 Identities = 13/59 (22%), Positives = 19/59 (32%), Gaps = 7/59 (11%)

Query: 99  HVYHHAAMLLTSWAYLRFIKGEQVIFLGALNCLVHAIMYSY--YFFAS----FGPKAQK 151
            ++H A +L             +V   G  N L  A  +        S    FGP+  K
Sbjct: 65  AIFHLAGILSAK-GEKDPALAYKVNMNGTYNILEAAKQHRVEKVVIPSTIGVFGPETPK 122


>3lqb_A Hatching enzyme, LOC792177 protein; hydrolase, metalloprotease,
           astacin, metal- protease; 1.10A {Danio rerio}
          Length = 199

 Score = 25.9 bits (57), Expect = 8.2
 Identities = 7/37 (18%), Positives = 17/37 (45%), Gaps = 5/37 (13%)

Query: 111 WAYLRFIKGEQVIFLGALNCL-----VHAIMYSYYFF 142
           ++ +    G+QV+ L    C+      H + ++  F+
Sbjct: 72  YSAIGRTGGKQVVSLNRKGCVYSGIAQHELNHALGFY 108


>1uf2_P Outer capsid protein P8; virus components, icosahedral virus; 3.50A
           {Rice dwarf virus} SCOP: a.115.1.3 b.19.1.1
          Length = 421

 Score = 25.9 bits (56), Expect = 9.2
 Identities = 17/68 (25%), Positives = 32/68 (47%), Gaps = 8/68 (11%)

Query: 119 GEQVIFLGALNCLVHAIMYSYYFFASFGPKAQKYL--WWK-----KYITKLQMVSTEVKN 171
           G+  IF  A++ L ++++ + Y      P    +   W++     + I  LQ V   ++ 
Sbjct: 340 GQYEIFSDAMDQLTNSLI-TNYMDPPAIPAGLAFTSPWFRFSERARTILALQNVDLNIRK 398

Query: 172 LVVRRAWV 179
           L+VR  WV
Sbjct: 399 LIVRHLWV 406


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.329    0.137    0.424 

Gapped
Lambda     K      H
   0.267   0.0659    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,869,660
Number of extensions: 154315
Number of successful extensions: 273
Number of sequences better than 10.0: 1
Number of HSP's gapped: 273
Number of HSP's successfully gapped: 9
Length of query: 187
Length of database: 6,701,793
Length adjustment: 88
Effective length of query: 99
Effective length of database: 4,244,745
Effective search space: 420229755
Effective search space used: 420229755
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 54 (24.7 bits)