RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy10424
         (187 letters)



>d2aaaa1 b.71.1.1 (A:382-476) Fungal alpha-amylase {Aspergillus
          niger, acid amylase [TaxId: 5061]}
          Length = 95

 Score = 28.2 bits (63), Expect = 0.24
 Identities = 9/44 (20%), Positives = 17/44 (38%), Gaps = 1/44 (2%)

Query: 42 YLVFVLYIGPKWMATRKPFQINRILMVY-NLGQTLASLYVVSSV 84
          Y     Y     +A  K    ++++ V  N G + +S  +  S 
Sbjct: 1  YANDAFYTDSNTIAMAKGTSGSQVITVLSNKGSSGSSYTLTLSG 44


>d2guya1 b.71.1.1 (A:382-476) Fungal alpha-amylase {Aspergillus
          oryzae, Taka-amylase [TaxId: 5062]}
          Length = 95

 Score = 27.4 bits (61), Expect = 0.41
 Identities = 10/43 (23%), Positives = 19/43 (44%), Gaps = 1/43 (2%)

Query: 42 YLVFVLYIGPKWMATRKPFQINRILMVY-NLGQTLASLYVVSS 83
          Y  + +Y     +A RK    ++I+ +  N G +  S  +  S
Sbjct: 1  YKNWPIYKDDTTIAMRKGTDGSQIVTILSNKGASGDSYTLSLS 43


>d1q90a3 f.23.23.1 (A:248-292) Cytochrome f subunit of the
           cytochrome b6f complex, transmembrane anchor
           {Chlamydomonas reinhardtii [TaxId: 3055]}
          Length = 45

 Score = 24.0 bits (52), Expect = 3.2
 Identities = 11/30 (36%), Positives = 17/30 (56%), Gaps = 6/30 (20%)

Query: 80  VVSSVFFVLKKKQ------SHITFLHVYHH 103
           +++ V  VLKKKQ      + + F H +HH
Sbjct: 16  LLTQVLLVLKKKQFEKVQLAEMNFHHHHHH 45


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.329    0.137    0.424 

Gapped
Lambda     K      H
   0.267   0.0499    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 701,514
Number of extensions: 29726
Number of successful extensions: 72
Number of sequences better than 10.0: 1
Number of HSP's gapped: 72
Number of HSP's successfully gapped: 9
Length of query: 187
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 107
Effective length of database: 1,309,196
Effective search space: 140083972
Effective search space used: 140083972
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 50 (23.6 bits)