Query psy10425
Match_columns 71
No_of_seqs 106 out of 608
Neff 4.6
Searched_HMMs 46136
Date Fri Aug 16 17:33:41 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10425.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10425hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3071|consensus 99.9 1.2E-22 2.7E-27 149.9 3.4 57 1-57 121-177 (274)
2 PF01151 ELO: GNS1/SUR4 family 99.8 1.3E-21 2.9E-26 139.7 -3.6 55 1-57 102-156 (250)
3 PTZ00251 fatty acid elongase; 99.7 8.6E-20 1.9E-24 133.7 -5.3 53 1-57 123-176 (272)
4 KOG3072|consensus 99.5 1.2E-15 2.7E-20 113.5 1.7 55 1-58 130-184 (282)
5 PF14826 FACT-Spt16_Nlob: FACT 46.2 11 0.00025 25.7 1.1 18 2-22 57-74 (163)
6 COG2704 DcuB Anaerobic C4-dica 36.0 22 0.00048 28.6 1.5 46 11-63 80-128 (436)
7 PF03605 DcuA_DcuB: Anaerobic 28.5 27 0.0006 27.4 0.9 45 11-63 76-124 (364)
8 KOG3159|consensus 20.6 22 0.00048 27.8 -1.0 12 23-34 153-164 (336)
9 PF05856 ARPC4: ARP2/3 complex 16.7 83 0.0018 22.4 1.3 22 9-30 103-127 (170)
10 PF06024 DUF912: Nucleopolyhed 15.9 69 0.0015 20.2 0.7 11 8-18 83-93 (101)
No 1
>KOG3071|consensus
Probab=99.86 E-value=1.2e-22 Score=149.90 Aligned_cols=57 Identities=35% Similarity=0.652 Sum_probs=55.1
Q ss_pred CcchhheeeeehccCCCceeEEeeeehhhHhHhhhheeeeecCCceeEEEeeccccc
Q psy10425 1 MSKIFRSVFFVLKKKQSHITFLHVYHHAAMLLTSWAYLRFIKGKPSGFDSRPRLLYS 57 (71)
Q Consensus 1 ~~El~DTvF~VLRKK~~QlsfLHvYHH~~~~~~~w~~~~~~~~g~~~~~~~lN~~i~ 57 (71)
++|++||+|+|||||++||||||+|||++|++.+|.++++.++|+..+.+++|+++|
T Consensus 121 flel~DTvFfVLRKk~rqlsFLHvyHH~~m~~~~~~~l~~~~~g~~~~~~~lNs~VH 177 (274)
T KOG3071|consen 121 FLELLDTVFFVLRKKDRQLSFLHVYHHGVMAFLSYLWLKFYGGGHGFFAILLNSFVH 177 (274)
T ss_pred HHHHHhheeeEEEccCCceEEEEEEecchHHHhhhheeEEeCCceeeeeeehhhhHH
Confidence 369999999999999999999999999999999999999999999999999999987
No 2
>PF01151 ELO: GNS1/SUR4 family; InterPro: IPR002076 This group of eukaryotic integral membrane proteins are evolutionary related, but exact function has not yet clearly been established. The proteins have from 290 to 435 amino acid residues. Structurally, they seem to be formed of three sections: a N-terminal region with two transmembrane domains, a central hydrophilic loop and a C-terminal region that contains from one to three transmembrane domains. Members of this family are involved in long chain fatty acid elongation systems that produce the 26-carbon precursors for ceramide and sphingolipid synthesis []. Predicted to be integral membrane proteins, in eukaryotes they are probably located on the endoplasmic reticulum. Yeast ELO3 (P40319 from SWISSPROT) affects plasma membrane H+-ATPase activity, and may act on a glucose-signalling pathway that controls the expression of several genes that are transcriptionally regulated by glucose such as PMA1 []. ; GO: 0016021 integral to membrane
Probab=99.79 E-value=1.3e-21 Score=139.68 Aligned_cols=55 Identities=35% Similarity=0.623 Sum_probs=52.1
Q ss_pred CcchhheeeeehccCCCceeEEeeeehhhHhHhhhheeeeecCCceeEEEeeccccc
Q psy10425 1 MSKIFRSVFFVLKKKQSHITFLHVYHHAAMLLTSWAYLRFIKGKPSGFDSRPRLLYS 57 (71)
Q Consensus 1 ~~El~DTvF~VLRKK~~QlsfLHvYHH~~~~~~~w~~~~~~~~g~~~~~~~lN~~i~ 57 (71)
++|++||+|+||||| |++|||||||++|++.+|..+++.++|+..+.+.+|+++|
T Consensus 102 ~~EllDTvflvLrkK--~lsfLHvYHH~~~~~~~w~~~~~~~~~~~~~~~~~N~~VH 156 (250)
T PF01151_consen 102 YYELLDTVFLVLRKK--QLSFLHVYHHASTLLYCWISYKYGPGGQIWFIAALNSFVH 156 (250)
T ss_pred HHHHHHHHHHHHhCC--CcchhHHhhhhhhhhhhhheeeeccccchhHHHHHHHHHH
Confidence 369999999999999 6999999999999999999999998899989889999987
No 3
>PTZ00251 fatty acid elongase; Provisional
Probab=99.71 E-value=8.6e-20 Score=133.74 Aligned_cols=53 Identities=17% Similarity=0.414 Sum_probs=45.0
Q ss_pred CcchhheeeeehccCCCceeEEeeeehhhHhHhhhheeeeecCCceeE-EEeeccccc
Q psy10425 1 MSKIFRSVFFVLKKKQSHITFLHVYHHAAMLLTSWAYLRFIKGKPSGF-DSRPRLLYS 57 (71)
Q Consensus 1 ~~El~DTvF~VLRKK~~QlsfLHvYHH~~~~~~~w~~~~~~~~g~~~~-~~~lN~~i~ 57 (71)
++|++||+|+||||| |++|||||||++|++.+|..+ .++++..+ .+.+|+++|
T Consensus 123 ~~El~DTvF~VLRKK--qvsFLHvYHH~~~~~~~w~~~--~~g~~~~~~~~~lNs~VH 176 (272)
T PTZ00251 123 VPEFGDTFFLIMGGK--KLPFLSWFHHVTIFLYAWMSY--QQGSSIWICAAAMNYFVH 176 (272)
T ss_pred HHHHHhHhhhhhcCC--CchHHHHHHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHH
Confidence 369999999999999 799999999999999999976 34444443 489999987
No 4
>KOG3072|consensus
Probab=99.55 E-value=1.2e-15 Score=113.50 Aligned_cols=55 Identities=24% Similarity=0.367 Sum_probs=48.2
Q ss_pred CcchhheeeeehccCCCceeEEeeeehhhHhHhhhheeeeecCCceeEEEeecccccc
Q psy10425 1 MSKIFRSVFFVLKKKQSHITFLHVYHHAAMLLTSWAYLRFIKGKPSGFDSRPRLLYSK 58 (71)
Q Consensus 1 ~~El~DTvF~VLRKK~~QlsfLHvYHH~~~~~~~w~~~~~~~~g~~~~~~~lN~~i~~ 58 (71)
..|++||+|+|||||| ++|||||||++++++.|..+....+.. .+..++|.++|-
T Consensus 130 ~~ElgDT~FiVLRKrP--liFlHWYHHi~~~iy~~~~y~~~~a~~-rw~i~mNy~vHa 184 (282)
T KOG3072|consen 130 APELGDTIFIVLRKRP--LIFLHWYHHILVLIYAWHSYIEKVAWG-RWFIWMNYLVHA 184 (282)
T ss_pred hhhhhceeEEEeccCc--cEEEechhhheeeeeeeeecccCCcCc-eEEEEEehhHHH
Confidence 3699999999999999 999999999999999999988765444 467889999875
No 5
>PF14826 FACT-Spt16_Nlob: FACT complex subunit SPT16 N-terminal lobe domain; PDB: 3BIQ_A 3BIT_A 3BIP_A 3CB6_A 3CB5_A.
Probab=46.19 E-value=11 Score=25.69 Aligned_cols=18 Identities=33% Similarity=0.464 Sum_probs=11.9
Q ss_pred cchhheeeeehccCCCceeEE
Q psy10425 2 SKIFRSVFFVLKKKQSHITFL 22 (71)
Q Consensus 2 ~El~DTvF~VLRKK~~QlsfL 22 (71)
+||-||++++.+++ +.+|
T Consensus 57 YEfpdTiiv~tk~~---i~~l 74 (163)
T PF14826_consen 57 YEFPDTIIVFTKKK---IHFL 74 (163)
T ss_dssp S--SSEEEEEETTE---EEEE
T ss_pred ccHhhhhhhhcCCE---EEEE
Confidence 69999999888664 6554
No 6
>COG2704 DcuB Anaerobic C4-dicarboxylate transporter [General function prediction only]
Probab=35.96 E-value=22 Score=28.60 Aligned_cols=46 Identities=20% Similarity=0.275 Sum_probs=31.4
Q ss_pred ehccCCCceeEEeeeehhhHhHhhhheeeeecCCceeEEEee---ccccccccccc
Q psy10425 11 VLKKKQSHITFLHVYHHAAMLLTSWAYLRFIKGKPSGFDSRP---RLLYSKQIRSE 63 (71)
Q Consensus 11 VLRKK~~QlsfLHvYHH~~~~~~~w~~~~~~~~g~~~~~~~l---N~~i~~~~~~~ 63 (71)
+|||.|+++++| .+..+|..--..+.|+..+..++ -.-....||+|
T Consensus 80 iLRknPK~iT~l-------AP~Vty~lT~maGTGh~vySilPVI~eVA~~~gIrPe 128 (436)
T COG2704 80 ILRKNPKYITIL-------APFVTYTLTILAGTGHVVYSILPVIAEVAKKNGIRPE 128 (436)
T ss_pred HHHhCCCeEEEe-------hhHHHHHHHHhhcCCceeeeehhHHHHHHHHcCCCCC
Confidence 689999999987 56777776555678888776543 12234456655
No 7
>PF03605 DcuA_DcuB: Anaerobic c4-dicarboxylate membrane transporter; InterPro: IPR004668 These proteins are members of the C4-Dicarboxylate Uptake (Dcu) family. Most proteins in this family are predicted to have 12 GES predicted transmembrane regions; however the one member whose membrane topology has been experimentally determined has 10 transmembrane regions, with both the N- and C-termini localized to the periplasm []. The DcuA and DcuB proteins are involved in the transport of aspartate, malate, fumarate and succinate in many species [, , ], and are thought to function as antiporters with any two of these substrates. Since DcuA is encoded in an operon with the gene for aspartase, and DcuB is encoded in an operon with the gene for fumarase, their physiological functions may be to catalyze aspartate:fumarate and fumarate:malate exchange during the anaerobic utilization of aspartate and fumarate, respectively []. The Escherichia coli DcuA and DcuB proteins have very different expression patterns []. DcuA is constitutively expressed; DcuB is strongly induced anaerobically by FNR and C4-dicarboxylates, while it is repressed by nitrate and subject to CRP-mediated catabolite repression.; GO: 0015556 C4-dicarboxylate transmembrane transporter activity, 0015740 C4-dicarboxylate transport, 0016021 integral to membrane
Probab=28.52 E-value=27 Score=27.39 Aligned_cols=45 Identities=22% Similarity=0.348 Sum_probs=30.2
Q ss_pred ehccCCCceeEEeeeehhhHhHhhhheeeeecCCceeEEEeeccc----cccccccc
Q psy10425 11 VLKKKQSHITFLHVYHHAAMLLTSWAYLRFIKGKPSGFDSRPRLL----YSKQIRSE 63 (71)
Q Consensus 11 VLRKK~~QlsfLHvYHH~~~~~~~w~~~~~~~~g~~~~~~~lN~~----i~~~~~~~ 63 (71)
+|||+|+|++|| .|+.+|...-..+.|+..+.. +.-+ ..+.||.|
T Consensus 76 ~LRk~Pk~It~l-------AP~vt~~~T~~~GTgh~a~s~-lPVI~eVA~~~~IRPe 124 (364)
T PF03605_consen 76 ILRKNPKYITFL-------APLVTYLFTFLAGTGHVAYSL-LPVIAEVAKENGIRPE 124 (364)
T ss_pred HHHhCCCcEEEe-------hhHHHHHHHHHhcccHHHHHh-hHHHHHHHHHcCCCCC
Confidence 589999999997 677888776666777765432 3322 33456655
No 8
>KOG3159|consensus
Probab=20.57 E-value=22 Score=27.75 Aligned_cols=12 Identities=50% Similarity=0.985 Sum_probs=9.5
Q ss_pred eeeehhhHhHhh
Q psy10425 23 HVYHHAAMLLTS 34 (71)
Q Consensus 23 HvYHH~~~~~~~ 34 (71)
-+|||++|++-+
T Consensus 153 raYHH~T~L~~a 164 (336)
T KOG3159|consen 153 RAYHHCTMLLNA 164 (336)
T ss_pred ceeeeEEeEecc
Confidence 489999987654
No 9
>PF05856 ARPC4: ARP2/3 complex 20 kDa subunit (ARPC4); InterPro: IPR008384 This family consists of several eukaryotic ARP2/3 complex 20 kDa subunit (P20-ARC) proteins. The Arp2/3 protein complex has been implicated in the control of actin polymerisation in cells. The human complex consists of seven subunits which include the actin related proteins Arp2 and Arp3 it has been suggested that the complex promotes actin assembly in lamellipodia and may participate in lamellipodial protrusion [].; GO: 0030041 actin filament polymerization, 0005856 cytoskeleton; PDB: 3DWL_K 1K8K_F 1U2V_F 2P9S_F 2P9U_F 2P9N_F 3DXK_F 1TYQ_F 3RSE_F 2P9I_F ....
Probab=16.71 E-value=83 Score=22.44 Aligned_cols=22 Identities=36% Similarity=0.717 Sum_probs=15.5
Q ss_pred eeehccCCC---ceeEEeeeehhhH
Q psy10425 9 FFVLKKKQS---HITFLHVYHHAAM 30 (71)
Q Consensus 9 F~VLRKK~~---QlsfLHvYHH~~~ 30 (71)
|.|||+||- .+|||=..+|+-.
T Consensus 103 F~ILRRkPv~GYDISFLIt~~h~e~ 127 (170)
T PF05856_consen 103 FFILRRKPVEGYDISFLITNFHTEQ 127 (170)
T ss_dssp STTB-SS--TTSSEEEEEECCHHHH
T ss_pred heeeeecCcCCCceeeeeechhhhh
Confidence 789999985 5799988888754
No 10
>PF06024 DUF912: Nucleopolyhedrovirus protein of unknown function (DUF912); InterPro: IPR009261 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf78; it is a family of uncharacterised viral proteins.
Probab=15.90 E-value=69 Score=20.22 Aligned_cols=11 Identities=27% Similarity=0.676 Sum_probs=8.5
Q ss_pred eeeehccCCCc
Q psy10425 8 VFFVLKKKQSH 18 (71)
Q Consensus 8 vF~VLRKK~~Q 18 (71)
.|+|||+|++.
T Consensus 83 YFVILRer~~~ 93 (101)
T PF06024_consen 83 YFVILRERQKS 93 (101)
T ss_pred EEEEEeccccc
Confidence 58899998753
Done!