Query psy10425
Match_columns 71
No_of_seqs 106 out of 608
Neff 4.6
Searched_HMMs 29240
Date Fri Aug 16 17:33:55 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10425.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/10425hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4asz_A BDNF/NT-3 growth factor 14.1 64 0.0022 22.2 1.2 17 53-69 147-163 (299)
2 3hmm_A TGF-beta receptor type- 13.1 66 0.0023 21.8 1.0 16 54-69 128-143 (303)
3 4g31_A Eukaryotic translation 12.4 80 0.0027 21.6 1.3 17 53-69 137-153 (299)
4 1d4b_A CIDE B, human cell deat 12.0 34 0.0012 22.1 -0.7 22 6-27 96-121 (122)
5 1k8k_F P20, ARP2/3 complex 20 12.0 77 0.0026 21.6 1.0 22 8-29 100-124 (168)
6 3hyh_A Carbon catabolite-derep 11.9 82 0.0028 21.6 1.2 17 53-69 131-147 (275)
7 1ehs_A STB, heat-stable entero 11.5 27 0.00091 19.1 -1.1 9 58-66 14-22 (48)
8 3dwl_F Actin-related protein 2 10.6 99 0.0034 21.0 1.2 22 8-29 100-124 (168)
9 3omv_A RAF proto-oncogene seri 10.5 1E+02 0.0036 21.4 1.4 17 53-69 151-167 (307)
10 4aoj_A High affinity nerve gro 10.4 1.1E+02 0.0036 21.4 1.4 16 54-69 178-193 (329)
No 1
>4asz_A BDNF/NT-3 growth factors receptor; transferase, TRKA, TRKB; 1.70A {Homo sapiens} PDB: 4at3_A* 4at4_A* 4at5_A* 3v5q_A*
Probab=14.13 E-value=64 Score=22.18 Aligned_cols=17 Identities=6% Similarity=0.470 Sum_probs=13.8
Q ss_pred cccccccccccceeeec
Q psy10425 53 RLLYSKQIRSESCIFSS 69 (71)
Q Consensus 53 N~~i~~~~~~~~~~~~~ 69 (71)
+-++|||+.++.|..++
T Consensus 147 ~~iiHRDlKp~NILl~~ 163 (299)
T 4asz_A 147 QHFVHRDLATRNCLVGE 163 (299)
T ss_dssp TTCCCSCCSGGGEEECG
T ss_pred CCcccCccCHhhEEECC
Confidence 34799999999987754
No 2
>3hmm_A TGF-beta receptor type-1; ALK5, kinase, inhibitor, quinazoline, aortic aneurysm, ATP-binding, craniosynostosis, disease mutation, disulfide bond; HET: 855; 1.70A {Homo sapiens} PDB: 1vjy_A* 3gxl_A* 3tzm_A* 2wot_A* 2wou_A* 1py5_A* 1rw8_A*
Probab=13.06 E-value=66 Score=21.83 Aligned_cols=16 Identities=6% Similarity=0.306 Sum_probs=13.2
Q ss_pred ccccccccccceeeec
Q psy10425 54 LLYSKQIRSESCIFSS 69 (71)
Q Consensus 54 ~~i~~~~~~~~~~~~~ 69 (71)
-++||||.++.+..++
T Consensus 128 ~IiHRDlKp~NILl~~ 143 (303)
T 3hmm_A 128 AIAHRDLKSKNILVKK 143 (303)
T ss_dssp CEECSCCCGGGEEECT
T ss_pred CEeeccCCcccEEECC
Confidence 4789999999987754
No 3
>4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant, catalytic domain, synthetic inhibitor, TRAN transferase inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB: 4g34_A*
Probab=12.41 E-value=80 Score=21.58 Aligned_cols=17 Identities=12% Similarity=0.384 Sum_probs=13.2
Q ss_pred cccccccccccceeeec
Q psy10425 53 RLLYSKQIRSESCIFSS 69 (71)
Q Consensus 53 N~~i~~~~~~~~~~~~~ 69 (71)
|-++||||.+|...+++
T Consensus 137 ~~IiHRDlKp~NILl~~ 153 (299)
T 4g31_A 137 KGLMHRDLKPSNIFFTM 153 (299)
T ss_dssp TTCCCCCCCGGGEEECT
T ss_pred CcCccccCcHHHeEECC
Confidence 34799999999887654
No 4
>1d4b_A CIDE B, human cell death-inducing effector B; alpha/beta roll, apoptosis; NMR {Homo sapiens} SCOP: d.15.2.1
Probab=11.98 E-value=34 Score=22.09 Aligned_cols=22 Identities=36% Similarity=0.504 Sum_probs=15.2
Q ss_pred heeeeehccCCC----ceeEEeeeeh
Q psy10425 6 RSVFFVLKKKQS----HITFLHVYHH 27 (71)
Q Consensus 6 DTvF~VLRKK~~----QlsfLHvYHH 27 (71)
+|.|++|++.+. +...||--||
T Consensus 96 nT~lmvL~~gq~W~p~~~~~~~~~~~ 121 (122)
T 1d4b_A 96 DTCLMVLQSGQSWSPTRSGVLHHHHH 121 (122)
T ss_dssp CCCCCEECSSCCCCCCCCSCCTTCCC
T ss_pred CCEEEEecCCCcccCCCcceeeeccC
Confidence 688999988752 4566665555
No 5
>1k8k_F P20, ARP2/3 complex 20 kDa subunit, P20-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: d.198.2.1 PDB: 1tyq_F* 1u2v_F* 2p9i_F* 2p9k_F* 2p9l_F 2p9n_F* 2p9p_F* 2p9s_F* 2p9u_F* 3dxk_F* 3dxm_F* 3rse_F
Probab=11.96 E-value=77 Score=21.59 Aligned_cols=22 Identities=36% Similarity=0.699 Sum_probs=16.9
Q ss_pred eeeehccCCC---ceeEEeeeehhh
Q psy10425 8 VFFVLKKKQS---HITFLHVYHHAA 29 (71)
Q Consensus 8 vF~VLRKK~~---QlsfLHvYHH~~ 29 (71)
-|.|||+||- .+|||=...|+-
T Consensus 100 ~f~ILRrkPv~GYDISFLItn~h~e 124 (168)
T 1k8k_F 100 NFFILRRKPVEGYDISFLITNFHTE 124 (168)
T ss_dssp TSTTBCSSCCTTCSEEEEEEHHHHH
T ss_pred ceEEeeeCCcCCccchhhhhhhhHH
Confidence 3779999985 568888777763
No 6
>3hyh_A Carbon catabolite-derepressing protein kinase; kinase domain, transferase, ATP-binding, carbohydrate metabo kinase, membrane; 2.20A {Saccharomyces cerevisiae} PDB: 3dae_A 2fh9_A 3mn3_A
Probab=11.89 E-value=82 Score=21.57 Aligned_cols=17 Identities=6% Similarity=0.354 Sum_probs=12.6
Q ss_pred cccccccccccceeeec
Q psy10425 53 RLLYSKQIRSESCIFSS 69 (71)
Q Consensus 53 N~~i~~~~~~~~~~~~~ 69 (71)
|-++||||.+|...+++
T Consensus 131 ~~IiHRDiKP~NILl~~ 147 (275)
T 3hyh_A 131 HKIVHRDLKPENLLLDE 147 (275)
T ss_dssp TTCCCCCCCTTTEEECT
T ss_pred CCcccccCChHHeEECC
Confidence 34788999888877654
No 7
>1ehs_A STB, heat-stable enterotoxin B; disulfide; NMR {Escherichia coli} SCOP: g.2.1.1
Probab=11.52 E-value=27 Score=19.07 Aligned_cols=9 Identities=56% Similarity=0.892 Sum_probs=7.3
Q ss_pred cccccccee
Q psy10425 58 KQIRSESCI 66 (71)
Q Consensus 58 ~~~~~~~~~ 66 (71)
|||..|||-
T Consensus 14 rqiakesck 22 (48)
T 1ehs_A 14 RQIAKESCK 22 (48)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 788889984
No 8
>3dwl_F Actin-related protein 2/3 complex subunit 4; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=10.55 E-value=99 Score=21.04 Aligned_cols=22 Identities=36% Similarity=0.685 Sum_probs=16.7
Q ss_pred eeeehccCCC---ceeEEeeeehhh
Q psy10425 8 VFFVLKKKQS---HITFLHVYHHAA 29 (71)
Q Consensus 8 vF~VLRKK~~---QlsfLHvYHH~~ 29 (71)
-|.|||+||- .+|||=.-.|+-
T Consensus 100 ~f~ILRrkPv~GYDISFLItn~H~e 124 (168)
T 3dwl_F 100 SFFILRRKPVQGYDISFLITNYHTE 124 (168)
T ss_dssp TSTTBCSSCCTTCSEEEEEETTHHH
T ss_pred ceEEeeeCCcCCcceeeeehHHHHH
Confidence 3779999985 568887777764
No 9
>3omv_A RAF proto-oncogene serine/threonine-protein kinas; serine/threonine-protein kinase, transferase; HET: SM5; 4.00A {Homo sapiens}
Probab=10.48 E-value=1e+02 Score=21.38 Aligned_cols=17 Identities=6% Similarity=0.321 Sum_probs=13.4
Q ss_pred cccccccccccceeeec
Q psy10425 53 RLLYSKQIRSESCIFSS 69 (71)
Q Consensus 53 N~~i~~~~~~~~~~~~~ 69 (71)
+-++||||.++.+...+
T Consensus 151 ~~IiHRDlKp~NILl~~ 167 (307)
T 3omv_A 151 KNIIHRDMKSNNIFLHE 167 (307)
T ss_dssp TTCBCSCCCSSSEEEET
T ss_pred CCccCCccCHHHEEECC
Confidence 34789999999887654
No 10
>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens}
Probab=10.39 E-value=1.1e+02 Score=21.37 Aligned_cols=16 Identities=6% Similarity=0.468 Sum_probs=13.4
Q ss_pred ccccccccccceeeec
Q psy10425 54 LLYSKQIRSESCIFSS 69 (71)
Q Consensus 54 ~~i~~~~~~~~~~~~~ 69 (71)
-++|||+.++.|...+
T Consensus 178 ~iiHRDLKp~NILl~~ 193 (329)
T 4aoj_A 178 HFVHRDLATRNCLVGQ 193 (329)
T ss_dssp TCCCSCCCGGGEEEET
T ss_pred CeecccccHhhEEECC
Confidence 4799999999988764
Done!