Query psy10425
Match_columns 71
No_of_seqs 106 out of 608
Neff 4.6
Searched_HMMs 13730
Date Fri Aug 16 17:34:01 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10425.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/10425hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1vf5c3 f.23.23.1 (C:250-286) 21.5 4.7 0.00034 20.1 -1.2 10 7-16 20-29 (37)
2 d2java1 d.144.1.7 (A:3-271) Se 19.9 16 0.0012 22.9 1.0 17 53-69 133-149 (269)
3 d1u58a1 b.1.1.2 (A:145-242) Im 19.3 29 0.0021 18.9 2.0 20 42-61 13-32 (98)
4 d1s9ja_ d.144.1.7 (A:) Dual sp 18.3 20 0.0014 23.0 1.1 17 53-69 124-140 (322)
5 d1q90a3 f.23.23.1 (A:248-292) 18.0 3.8 0.00027 21.3 -2.1 10 7-16 19-28 (45)
6 d1unla_ d.144.1.7 (A:) Cyclin- 18.0 21 0.0015 21.8 1.1 17 53-69 120-136 (292)
7 d1k8kf_ d.198.2.1 (F:) ARPC4 ( 13.8 29 0.0021 22.0 1.0 22 8-29 99-123 (167)
8 d1ua2a_ d.144.1.7 (A:) Cell di 13.8 33 0.0024 21.3 1.3 16 54-69 120-135 (299)
9 d1ywna1 d.144.1.7 (A:818-1166) 13.2 34 0.0025 21.2 1.2 16 54-69 154-169 (299)
10 d1rjba_ d.144.1.7 (A:) Fl cyto 13.0 34 0.0025 21.8 1.2 16 54-69 184-199 (325)
No 1
>d1vf5c3 f.23.23.1 (C:250-286) Cytochrome f subunit of the cytochrome b6f complex, transmembrane anchor {Mastigocladus laminosus [TaxId: 83541]}
Probab=21.51 E-value=4.7 Score=20.12 Aligned_cols=10 Identities=50% Similarity=0.833 Sum_probs=7.7
Q ss_pred eeeeehccCC
Q psy10425 7 SVFFVLKKKQ 16 (71)
Q Consensus 7 TvF~VLRKK~ 16 (71)
-+++||+||+
T Consensus 20 Qi~lVlKKKQ 29 (37)
T d1vf5c3 20 QLMLILKKKQ 29 (37)
T ss_dssp HHHHHHHTGG
T ss_pred HHHHHHHHHH
Confidence 3578999985
No 2
>d2java1 d.144.1.7 (A:3-271) Serine/threonine-protein kinase Nek2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=19.87 E-value=16 Score=22.94 Aligned_cols=17 Identities=0% Similarity=0.300 Sum_probs=8.2
Q ss_pred cccccccccccceeeec
Q psy10425 53 RLLYSKQIRSESCIFSS 69 (71)
Q Consensus 53 N~~i~~~~~~~~~~~~~ 69 (71)
|-++||||++|.+..++
T Consensus 133 ~~IiHrDiKp~NIll~~ 149 (269)
T d2java1 133 HTVLHRDLKPANVFLDG 149 (269)
T ss_dssp -------CCGGGEEECT
T ss_pred CCEEeCcCchhhcCcCC
Confidence 34799999999987754
No 3
>d1u58a1 b.1.1.2 (A:145-242) Immunomodulatory protein m144, alpha-3 domain {Murine cytomegalovirus [TaxId: 10366]}
Probab=19.32 E-value=29 Score=18.93 Aligned_cols=20 Identities=10% Similarity=0.140 Sum_probs=16.5
Q ss_pred cCCceeEEEeeccccccccc
Q psy10425 42 KGKPSGFDSRPRLLYSKQIR 61 (71)
Q Consensus 42 ~~g~~~~~~~lN~~i~~~~~ 61 (71)
+.|...+.++++-|+|++|.
T Consensus 13 ~~~~vtL~C~~~gFyP~~I~ 32 (98)
T d1u58a1 13 REGGMRLRCFARDYYPADLE 32 (98)
T ss_dssp SSSCEEEEEEEEEEBSSCEE
T ss_pred CCCcEEEEEEEEEEcCCCCE
Confidence 36677889999999999885
No 4
>d1s9ja_ d.144.1.7 (A:) Dual specificity mitogen-activated protein kinase kinase 1, Mek1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=18.28 E-value=20 Score=22.97 Aligned_cols=17 Identities=6% Similarity=0.329 Sum_probs=13.7
Q ss_pred cccccccccccceeeec
Q psy10425 53 RLLYSKQIRSESCIFSS 69 (71)
Q Consensus 53 N~~i~~~~~~~~~~~~~ 69 (71)
|-++||||++|.+...+
T Consensus 124 ~~IiHRDiKP~NILl~~ 140 (322)
T d1s9ja_ 124 HKIMHRDVKPSNILVNS 140 (322)
T ss_dssp HCCCCSCCSGGGEEECT
T ss_pred CCEEccccCHHHeeECC
Confidence 55899999999887754
No 5
>d1q90a3 f.23.23.1 (A:248-292) Cytochrome f subunit of the cytochrome b6f complex, transmembrane anchor {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=18.04 E-value=3.8 Score=21.31 Aligned_cols=10 Identities=70% Similarity=0.909 Sum_probs=7.7
Q ss_pred eeeeehccCC
Q psy10425 7 SVFFVLKKKQ 16 (71)
Q Consensus 7 TvF~VLRKK~ 16 (71)
-+|+||+||+
T Consensus 19 Qi~LVLKKKQ 28 (45)
T d1q90a3 19 QVLLVLKKKQ 28 (45)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3678999984
No 6
>d1unla_ d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [TaxId: 9606]}
Probab=17.96 E-value=21 Score=21.80 Aligned_cols=17 Identities=6% Similarity=0.362 Sum_probs=12.7
Q ss_pred cccccccccccceeeec
Q psy10425 53 RLLYSKQIRSESCIFSS 69 (71)
Q Consensus 53 N~~i~~~~~~~~~~~~~ 69 (71)
|-++||||++|.+.+..
T Consensus 120 ~~IvHrDiKP~NIli~~ 136 (292)
T d1unla_ 120 RNVLHRDLKPQNLLINR 136 (292)
T ss_dssp TTEECCCCSGGGEEECT
T ss_pred CCEeeecccCccccccc
Confidence 34789999998887653
No 7
>d1k8kf_ d.198.2.1 (F:) ARPC4 (20 kDa subunit) {Cow (Bos taurus) [TaxId: 9913]}
Probab=13.84 E-value=29 Score=22.02 Aligned_cols=22 Identities=36% Similarity=0.699 Sum_probs=17.1
Q ss_pred eeeehccCCC---ceeEEeeeehhh
Q psy10425 8 VFFVLKKKQS---HITFLHVYHHAA 29 (71)
Q Consensus 8 vF~VLRKK~~---QlsfLHvYHH~~ 29 (71)
.|.|||+||- .+|||=..+|+-
T Consensus 99 ~F~ILRrkPi~GYDISFLItn~h~e 123 (167)
T d1k8kf_ 99 NFFILRRKPVEGYDISFLITNFHTE 123 (167)
T ss_dssp TSTTBCSSCCTTCSEEEEEEHHHHH
T ss_pred hceeeeecCcCCCceeeeehhHHHH
Confidence 4789999985 478888877764
No 8
>d1ua2a_ d.144.1.7 (A:) Cell division protein kinase 7, CDK7 {Human (Homo sapiens) [TaxId: 9606]}
Probab=13.78 E-value=33 Score=21.27 Aligned_cols=16 Identities=0% Similarity=0.360 Sum_probs=12.1
Q ss_pred ccccccccccceeeec
Q psy10425 54 LLYSKQIRSESCIFSS 69 (71)
Q Consensus 54 ~~i~~~~~~~~~~~~~ 69 (71)
-++||||++|.+..++
T Consensus 120 ~iiHrDiKp~NIli~~ 135 (299)
T d1ua2a_ 120 WILHRDLKPNNLLLDE 135 (299)
T ss_dssp TCCCCCCCGGGEEECT
T ss_pred ceecccCCcceEEecC
Confidence 4688888888877654
No 9
>d1ywna1 d.144.1.7 (A:818-1166) Vascular endothelial growth factor receptor 2 (kdr) {Human (Homo sapiens) [TaxId: 9606]}
Probab=13.17 E-value=34 Score=21.20 Aligned_cols=16 Identities=6% Similarity=0.206 Sum_probs=12.9
Q ss_pred ccccccccccceeeec
Q psy10425 54 LLYSKQIRSESCIFSS 69 (71)
Q Consensus 54 ~~i~~~~~~~~~~~~~ 69 (71)
-++||||.++.+..++
T Consensus 154 ~ivHrDlKp~NILl~~ 169 (299)
T d1ywna1 154 KCIHRDLAARNILLSE 169 (299)
T ss_dssp TCCCSCCCGGGEEECG
T ss_pred CCcCCcCCccceeECC
Confidence 3689999999987764
No 10
>d1rjba_ d.144.1.7 (A:) Fl cytokine receptor {Human (Homo sapiens) [TaxId: 9606]}
Probab=13.02 E-value=34 Score=21.75 Aligned_cols=16 Identities=0% Similarity=0.158 Sum_probs=13.2
Q ss_pred ccccccccccceeeec
Q psy10425 54 LLYSKQIRSESCIFSS 69 (71)
Q Consensus 54 ~~i~~~~~~~~~~~~~ 69 (71)
-++||||.+|.+..++
T Consensus 184 ~IiHRDlKp~Nill~~ 199 (325)
T d1rjba_ 184 SCVHRDLAARNVLVTH 199 (325)
T ss_dssp TEEETTCSGGGEEEET
T ss_pred CeeeccCchhcccccc
Confidence 4799999999987754
Done!