RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy10425
         (71 letters)



>gnl|CDD|216332 pfam01151, ELO, GNS1/SUR4 family.  Members of this family are
           involved in long chain fatty acid elongation systems
           that produce the 26-carbon precursors for ceramide and
           sphingolipid synthesis. Predicted to be integral
           membrane proteins, in eukaryotes they are probably
           located on the endoplasmic reticulum. Yeast ELO3 affects
           plasma membrane H+-ATPase activity, and may act on a
           glucose-signaling pathway that controls the expression
           of several genes that are transcriptionally regulated by
           glucose such as PMA1.
          Length = 244

 Score = 59.2 bits (144), Expect = 2e-12
 Identities = 23/43 (53%), Positives = 30/43 (69%), Gaps = 3/43 (6%)

Query: 1   MSKI---FRSVFFVLKKKQSHITFLHVYHHAAMLLTSWAYLRF 40
           +SK      +VF VL+KKQ  ++FLHVYHHA MLL SW  L++
Sbjct: 95  LSKFLELLDTVFLVLRKKQRQLSFLHVYHHATMLLYSWLGLKY 137


>gnl|CDD|216439 pfam01333, Apocytochr_F_C, Apocytochrome F, C-terminal.  This is a
           sub-family of cytochrome C. See pfam00034.
          Length = 118

 Score = 27.5 bits (62), Expect = 0.32
 Identities = 7/9 (77%), Positives = 8/9 (88%)

Query: 8   VFFVLKKKQ 16
           +F VLKKKQ
Sbjct: 99  IFLVLKKKQ 107


>gnl|CDD|172499 PRK13998, PRK13998, potassium-transporting ATPase subunit C;
          Provisional.
          Length = 186

 Score = 26.6 bits (58), Expect = 0.91
 Identities = 15/57 (26%), Positives = 25/57 (43%), Gaps = 2/57 (3%)

Query: 8  VFFVLKKKQSHITFLHVYHHAAMLLTSWAYLRFIKGKPSGFD--SRPRLLYSKQIRS 62
          +FF  +   S IT+ +    + ++   W   R+  G+PS  D    P  LY   + S
Sbjct: 32 IFFYQQANGSLITYDNRIVGSKLIGQHWTETRYFHGRPSAVDYNMNPEKLYKNGVSS 88


>gnl|CDD|215363 PLN02677, PLN02677, mevalonate kinase.
          Length = 387

 Score = 25.9 bits (57), Expect = 1.8
 Identities = 10/21 (47%), Positives = 13/21 (61%), Gaps = 2/21 (9%)

Query: 31  LLTSWAYL--RFIKGKPSGFD 49
           L+  WA+   + I GKPSG D
Sbjct: 184 LVNKWAFEGEKIIHGKPSGID 204


>gnl|CDD|176978 CHL00037, petA, cytochrome f.
          Length = 320

 Score = 25.7 bits (57), Expect = 2.0
 Identities = 7/9 (77%), Positives = 8/9 (88%)

Query: 8   VFFVLKKKQ 16
           +F VLKKKQ
Sbjct: 301 IFLVLKKKQ 309


>gnl|CDD|236548 PRK09525, lacZ, beta-D-galactosidase; Reviewed.
          Length = 1027

 Score = 25.3 bits (56), Expect = 3.4
 Identities = 9/24 (37%), Positives = 14/24 (58%), Gaps = 1/24 (4%)

Query: 1   MSKIFRSVFFVLKKKQSHITFLHV 24
           MS IFR V  +L K  + ++  H+
Sbjct: 206 MSGIFRDV-SLLHKPTTQLSDFHI 228


>gnl|CDD|237554 PRK13909, PRK13909, putative recombination protein RecB;
           Provisional.
          Length = 910

 Score = 24.2 bits (53), Expect = 7.9
 Identities = 9/15 (60%), Positives = 10/15 (66%)

Query: 3   KIFRSVFFVLKKKQS 17
           K FRS F+V   KQS
Sbjct: 362 KKFRSFFYVGDVKQS 376


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.331    0.138    0.423 

Gapped
Lambda     K      H
   0.267   0.0802    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 3,558,734
Number of extensions: 258224
Number of successful extensions: 231
Number of sequences better than 10.0: 1
Number of HSP's gapped: 231
Number of HSP's successfully gapped: 11
Length of query: 71
Length of database: 10,937,602
Length adjustment: 41
Effective length of query: 30
Effective length of database: 9,119,088
Effective search space: 273572640
Effective search space used: 273572640
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 53 (24.1 bits)