RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy10425
         (71 letters)



>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
            acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
            synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 28.9 bits (64), Expect = 0.11
 Identities = 9/51 (17%), Positives = 15/51 (29%), Gaps = 8/51 (15%)

Query: 2    SKIFRSVFFVLKKKQSHITF------LHVYHHA--AMLLTSWAYLRFIKGK 44
                  +F  + +  +  TF      L        A+ L   A    +K K
Sbjct: 1700 KLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSK 1750


>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
          photosynthetic reaction center, peripheral antenna;
          HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 28.0 bits (61), Expect = 0.21
 Identities = 10/49 (20%), Positives = 13/49 (26%), Gaps = 24/49 (48%)

Query: 12 LKKKQSHITFLHVYHHAAMLLTSWAYLRFIKGKPSGFDSRPRLLYSKQI 60
          LKK Q+    L +Y                       DS P L     +
Sbjct: 22 LKKLQAS---LKLY------------------AD---DSAPALAIKATM 46


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 25.6 bits (55), Expect = 1.4
 Identities = 13/72 (18%), Positives = 23/72 (31%), Gaps = 21/72 (29%)

Query: 21  FLHVYHHAA-------MLLTSWAYL--RFIKGK-----------PSGFDSRPRL-LYSKQ 59
           + H+ HH         M L    +L  RF++ K            S  ++  +L  Y   
Sbjct: 474 YSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPY 533

Query: 60  IRSESCIFSSRL 71
           I      +   +
Sbjct: 534 ICDNDPKYERLV 545


>1q90_A Apocytochrome F; membrane protein complex, photosynthesis, electron
           transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR
           TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP:
           b.2.6.1 b.84.2.2 f.23.23.1
          Length = 292

 Score = 25.4 bits (55), Expect = 1.6
 Identities = 11/26 (42%), Positives = 14/26 (53%), Gaps = 6/26 (23%)

Query: 8   VFFVLKKKQ------SHITFLHVYHH 27
           V  VLKKKQ      + + F H +HH
Sbjct: 267 VLLVLKKKQFEKVQLAEMNFHHHHHH 292


>3oba_A Beta-galactosidase; TIM barrel, tetramer, GH2, glycosidase,
           hydrolase; 2.75A {Kluyveromyces lactis} PDB: 3ob8_A
          Length = 1032

 Score = 24.9 bits (54), Expect = 2.9
 Identities = 8/24 (33%), Positives = 14/24 (58%)

Query: 1   MSKIFRSVFFVLKKKQSHITFLHV 24
           +S I+R V  +   K++HI  + V
Sbjct: 198 LSGIYRDVSLLKLPKKAHIEDVRV 221


>2b2h_A AMT-1, ammonium transporter; membrane protein, transport protein;
           1.54A {Archaeoglobus fulgidus} PDB: 2b2f_A 2b2i_A 2b2j_A
          Length = 399

 Score = 23.7 bits (52), Expect = 7.4
 Identities = 7/19 (36%), Positives = 9/19 (47%), Gaps = 2/19 (10%)

Query: 28  AAMLLTSWAYLRFIKGKPS 46
            A     W  + +IKGKP 
Sbjct: 229 VAGF--VWMVIGWIKGKPG 245


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.331    0.138    0.423 

Gapped
Lambda     K      H
   0.267   0.0595    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,065,255
Number of extensions: 45947
Number of successful extensions: 80
Number of sequences better than 10.0: 1
Number of HSP's gapped: 80
Number of HSP's successfully gapped: 6
Length of query: 71
Length of database: 6,701,793
Length adjustment: 41
Effective length of query: 30
Effective length of database: 5,557,032
Effective search space: 166710960
Effective search space used: 166710960
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 51 (23.7 bits)