RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy10425
         (71 letters)



>d1q90a3 f.23.23.1 (A:248-292) Cytochrome f subunit of the
          cytochrome b6f complex, transmembrane anchor
          {Chlamydomonas reinhardtii [TaxId: 3055]}
          Length = 45

 Score = 22.8 bits (49), Expect = 2.0
 Identities = 11/30 (36%), Positives = 15/30 (50%), Gaps = 6/30 (20%)

Query: 4  IFRSVFFVLKKKQ------SHITFLHVYHH 27
          +   V  VLKKKQ      + + F H +HH
Sbjct: 16 LLTQVLLVLKKKQFEKVQLAEMNFHHHHHH 45


>d1vf5c3 f.23.23.1 (C:250-286) Cytochrome f subunit of the
          cytochrome b6f complex, transmembrane anchor
          {Mastigocladus laminosus [TaxId: 83541]}
          Length = 37

 Score = 21.3 bits (45), Expect = 6.4
 Identities = 5/9 (55%), Positives = 7/9 (77%)

Query: 8  VFFVLKKKQ 16
          +  +LKKKQ
Sbjct: 21 LMLILKKKQ 29


>d1kvka1 d.14.1.5 (A:1-225) Mevalonate kinase {Rat (Rattus
           norvegicus) [TaxId: 10116]}
          Length = 225

 Score = 22.2 bits (46), Expect = 8.5
 Identities = 10/21 (47%), Positives = 11/21 (52%), Gaps = 2/21 (9%)

Query: 31  LLTSWAYL--RFIKGKPSGFD 49
            +  WAY   R I G PSG D
Sbjct: 184 SINKWAYEGERVIHGNPSGVD 204


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.331    0.138    0.423 

Gapped
Lambda     K      H
   0.267   0.0653    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 264,657
Number of extensions: 9492
Number of successful extensions: 24
Number of sequences better than 10.0: 1
Number of HSP's gapped: 24
Number of HSP's successfully gapped: 4
Length of query: 71
Length of database: 2,407,596
Length adjustment: 39
Effective length of query: 32
Effective length of database: 1,872,126
Effective search space: 59908032
Effective search space used: 59908032
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 47 (22.0 bits)