BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10428
(309 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2OCS|A Chain A, The Crystal Structure Of The First Pdz Domain Of Human
Nherf-2 (slc9a3r2)
Length = 88
Score = 102 bits (255), Expect = 2e-22, Method: Composition-based stats.
Identities = 49/82 (59%), Positives = 64/82 (78%), Gaps = 2/82 (2%)
Query: 10 RLCHILKWTDFDGYGFNLHGEKGKTGQYIGKVDEGSPAEAAGLKEGDHIIEVNSVNICNE 69
RLC +++ GYGF+LHGEKG+ GQ+I +V+ GSPAEAA L+ GD ++EVN VN+ E
Sbjct: 3 RLCRLVRGEQ--GYGFHLHGEKGRRGQFIRRVEPGSPAEAAALRAGDRLVEVNGVNVEGE 60
Query: 70 NHNQVVQRIKAVPDETKLLVVD 91
H+QVVQRIKAV +T+LLVVD
Sbjct: 61 THHQVVQRIKAVEGQTRLLVVD 82
>pdb|2KRG|A Chain A, Solution Structure Of Human Sodium HYDROGEN EXCHANGE
Regulatory Factor 1(150-358)
Length = 216
Score = 97.1 bits (240), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 52/109 (47%), Positives = 66/109 (60%), Gaps = 7/109 (6%)
Query: 10 RLCHILKWTDFDGYGFNLHGEKGKTGQYIGKVDEGSPAEAAGLKEGDHIIEVNSVNICNE 69
RLC + K GYGFNLH +K K GQ+I VD SPAEA+GL+ D I+EVN V + +
Sbjct: 11 RLCTMKKGPS--GYGFNLHSDKSKPGQFIRSVDPDSPAEASGLRAQDRIVEVNGVCMEGK 68
Query: 70 NHNQVVQRIKAVPDETKLLVVDVASEEYFKSNNITISSSLPDIVHLRTP 118
H VV I+A DETKLLVVD ++E+FK + +P HL P
Sbjct: 69 QHGDVVSAIRAGGDETKLLVVDRETDEFFKKCRV-----IPSQEHLNGP 112
>pdb|2KJD|A Chain A, Solution Structure Of Extended Pdz2 Domain From Nherf1
(150- 270)
Length = 128
Score = 95.1 bits (235), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 52/109 (47%), Positives = 66/109 (60%), Gaps = 7/109 (6%)
Query: 10 RLCHILKWTDFDGYGFNLHGEKGKTGQYIGKVDEGSPAEAAGLKEGDHIIEVNSVNICNE 69
RLC + K GYGFNLH +K K GQ+I VD SPAEA+GL+ D I+EVN V + +
Sbjct: 11 RLCTMKKGPS--GYGFNLHSDKSKPGQFIRSVDPDSPAEASGLRAQDRIVEVNGVCMEGK 68
Query: 70 NHNQVVQRIKAVPDETKLLVVDVASEEYFKSNNITISSSLPDIVHLRTP 118
H VV I+A DETKLLVVD ++E+FK + +P HL P
Sbjct: 69 QHGDVVSAIRAGGDETKLLVVDRETDEFFKKCRV-----IPSQEHLNGP 112
>pdb|1G9O|A Chain A, First Pdz Domain Of The Human Na+H+ EXCHANGER REGULATORY
Factor
Length = 91
Score = 92.8 bits (229), Expect = 2e-19, Method: Composition-based stats.
Identities = 48/87 (55%), Positives = 60/87 (68%), Gaps = 2/87 (2%)
Query: 10 RLCHILKWTDFDGYGFNLHGEKGKTGQYIGKVDEGSPAEAAGLKEGDHIIEVNSVNICNE 69
RLC + K + GYGF+LHGEKGK GQYI V+ GSPAE AGL GD ++EVN N+ E
Sbjct: 5 RLCCLEKGPN--GYGFHLHGEKGKLGQYIRLVEPGSPAEKAGLLAGDRLVEVNGENVEKE 62
Query: 70 NHNQVVQRIKAVPDETKLLVVDVASEE 96
H QVV RI+A + +LLVVD ++E
Sbjct: 63 THQQVVSRIRAALNAVRLLVVDPETDE 89
>pdb|1GQ5|A Chain A, Structural Determinants Of The Nherf Interaction With
Beta2- Ar And Pdgfr
Length = 91
Score = 92.0 bits (227), Expect = 4e-19, Method: Composition-based stats.
Identities = 47/89 (52%), Positives = 59/89 (66%), Gaps = 2/89 (2%)
Query: 10 RLCHILKWTDFDGYGFNLHGEKGKTGQYIGKVDEGSPAEAAGLKEGDHIIEVNSVNICNE 69
RLC + K + GYGF+LHGEKGK GQYI V+ GSPAE AGL GD ++EVN N+ E
Sbjct: 5 RLCCLEKGPN--GYGFHLHGEKGKLGQYIRLVEPGSPAEKAGLLAGDRLVEVNGENVEKE 62
Query: 70 NHNQVVQRIKAVPDETKLLVVDVASEEYF 98
H QVV RI+A + +LLVVD + +
Sbjct: 63 THQQVVSRIRAALNAVRLLVVDPEEDSFL 91
>pdb|1I92|A Chain A, Structural Basis Of The Nherf Pdz1-Cftr Interaction
Length = 91
Score = 91.3 bits (225), Expect = 6e-19, Method: Composition-based stats.
Identities = 47/82 (57%), Positives = 57/82 (69%), Gaps = 2/82 (2%)
Query: 10 RLCHILKWTDFDGYGFNLHGEKGKTGQYIGKVDEGSPAEAAGLKEGDHIIEVNSVNICNE 69
RLC + K + GYGF+LHGEKGK GQYI V+ GSPAE AGL GD ++EVN N+ E
Sbjct: 5 RLCCLEKGPN--GYGFHLHGEKGKLGQYIRLVEPGSPAEKAGLLAGDRLVEVNGENVEKE 62
Query: 70 NHNQVVQRIKAVPDETKLLVVD 91
H QVV RI+A + +LLVVD
Sbjct: 63 THQQVVSRIRAALNAVRLLVVD 84
>pdb|2JXO|A Chain A, Structure Of The Second Pdz Domain Of Nherf-1
Length = 98
Score = 90.9 bits (224), Expect = 8e-19, Method: Composition-based stats.
Identities = 48/90 (53%), Positives = 60/90 (66%), Gaps = 2/90 (2%)
Query: 10 RLCHILKWTDFDGYGFNLHGEKGKTGQYIGKVDEGSPAEAAGLKEGDHIIEVNSVNICNE 69
RLC + K GYGFNLH +K K GQ+I VD SPAEA+GL+ D I+EVN V + +
Sbjct: 11 RLCTMKKGPS--GYGFNLHSDKSKPGQFIRSVDPDSPAEASGLRAQDRIVEVNGVCMEGK 68
Query: 70 NHNQVVQRIKAVPDETKLLVVDVASEEYFK 99
H VV I+A DETKLLVVD ++E+FK
Sbjct: 69 QHGDVVSAIRAGGDETKLLVVDRETDEFFK 98
>pdb|1GQ4|A Chain A, Structural Determinants Of The Nherf Interaction With
Beta2ar And Pdgfr
Length = 90
Score = 90.5 bits (223), Expect = 1e-18, Method: Composition-based stats.
Identities = 47/82 (57%), Positives = 57/82 (69%), Gaps = 2/82 (2%)
Query: 10 RLCHILKWTDFDGYGFNLHGEKGKTGQYIGKVDEGSPAEAAGLKEGDHIIEVNSVNICNE 69
RLC + K + GYGF+LHGEKGK GQYI V+ GSPAE AGL GD ++EVN N+ E
Sbjct: 4 RLCCLEKGPN--GYGFHLHGEKGKLGQYIRLVEPGSPAEKAGLLAGDRLVEVNGENVEKE 61
Query: 70 NHNQVVQRIKAVPDETKLLVVD 91
H QVV RI+A + +LLVVD
Sbjct: 62 THQQVVSRIRAALNAVRLLVVD 83
>pdb|2OZF|A Chain A, The Crystal Structure Of The 2nd Pdz Domain Of The Human
Nherf-1 (Slc9a3r1)
Length = 92
Score = 82.4 bits (202), Expect = 3e-16, Method: Composition-based stats.
Identities = 46/86 (53%), Positives = 56/86 (65%), Gaps = 2/86 (2%)
Query: 10 RLCHILKWTDFDGYGFNLHGEKGKTGQYIGKVDEGSPAEAAGLKEGDHIIEVNSVNICNE 69
RLC + K GYGFNLH +K K GQ+I VD SPAEA+GL+ D I+EVN V + +
Sbjct: 6 RLCTMKKGPS--GYGFNLHSDKSKPGQFIRSVDPDSPAEASGLRAQDRIVEVNGVCMEGK 63
Query: 70 NHNQVVQRIKAVPDETKLLVVDVASE 95
H VV I+A DETKLLVVD +E
Sbjct: 64 QHGDVVSAIRAGGDETKLLVVDRETE 89
>pdb|2HE4|A Chain A, The Crystal Structure Of The Second Pdz Domain Of Human
Nherf-2 (Slc9a3r2) Interacting With A Mode 1 Pdz
Binding Motif
Length = 90
Score = 80.9 bits (198), Expect = 8e-16, Method: Composition-based stats.
Identities = 43/81 (53%), Positives = 52/81 (64%), Gaps = 2/81 (2%)
Query: 10 RLCHILKWTDFDGYGFNLHGEKGKTGQYIGKVDEGSPAEAAGLKEGDHIIEVNSVNICNE 69
RLCH+ K GYGFNLH +K + GQYI VD GSPA +GL+ D +IEVN N+
Sbjct: 6 RLCHLRKGPQ--GYGFNLHSDKSRPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGL 63
Query: 70 NHNQVVQRIKAVPDETKLLVV 90
H +VV IKA DE +LLVV
Sbjct: 64 RHAEVVASIKAREDEARLLVV 84
>pdb|2EEJ|A Chain A, Solution Structure Of Fourth Pdz Domain Of Pdz Domain
Containing Protein 1
Length = 96
Score = 64.7 bits (156), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 52/81 (64%), Gaps = 2/81 (2%)
Query: 10 RLCHILKWTDFDGYGFNLHGEKGKTGQYIGKVDEGSPAEAAGLKEGDHIIEVNSVNICNE 69
+LC + K + GYGF+L+ +G G +I +V +G PA+ AGL++ D IIEVN VN+ +E
Sbjct: 9 KLCRLAKGEN--GYGFHLNAIRGLPGSFIKEVQKGGPADLAGLEDEDVIIEVNGVNVLDE 66
Query: 70 NHNQVVQRIKAVPDETKLLVV 90
+ +VV RI++ LLV
Sbjct: 67 PYEKVVDRIQSSGKNVTLLVC 87
>pdb|3TMH|A Chain A, Crystal Structure Of Dual-Specific A-Kinase Anchoring
Protein 2 In Complex With Camp-Dependent Protein Kinase
A Type Ii Alpha And Pdzk1
pdb|3TMH|E Chain E, Crystal Structure Of Dual-Specific A-Kinase Anchoring
Protein 2 In Complex With Camp-Dependent Protein Kinase
A Type Ii Alpha And Pdzk1
pdb|3TMH|I Chain I, Crystal Structure Of Dual-Specific A-Kinase Anchoring
Protein 2 In Complex With Camp-Dependent Protein Kinase
A Type Ii Alpha And Pdzk1
Length = 87
Score = 64.3 bits (155), Expect = 7e-11, Method: Composition-based stats.
Identities = 34/80 (42%), Positives = 52/80 (65%), Gaps = 2/80 (2%)
Query: 10 RLCHILKWTDFDGYGFNLHGEKGKTGQYIGKVDEGSPAEAAGLKEGDHIIEVNSVNICNE 69
+LC + K + GYGF+L+ +G G +I +V +G PA+ AGL++ D IIEVN VN+ +E
Sbjct: 5 KLCRLAKGEN--GYGFHLNAIRGLPGSFIKEVQKGGPADLAGLEDEDVIIEVNGVNVLDE 62
Query: 70 NHNQVVQRIKAVPDETKLLV 89
+ +VV RI++ LLV
Sbjct: 63 PYEKVVDRIQSSGKNVTLLV 82
>pdb|2VSP|A Chain A, Crystal Structure Of The Fourth Pdz Domain Of Pdz
Domain- Containing Protein 1
pdb|2VSP|B Chain B, Crystal Structure Of The Fourth Pdz Domain Of Pdz
Domain- Containing Protein 1
pdb|2VSP|C Chain C, Crystal Structure Of The Fourth Pdz Domain Of Pdz
Domain- Containing Protein 1
pdb|2VSP|D Chain D, Crystal Structure Of The Fourth Pdz Domain Of Pdz
Domain- Containing Protein 1
Length = 91
Score = 64.3 bits (155), Expect = 7e-11, Method: Composition-based stats.
Identities = 34/80 (42%), Positives = 52/80 (65%), Gaps = 2/80 (2%)
Query: 10 RLCHILKWTDFDGYGFNLHGEKGKTGQYIGKVDEGSPAEAAGLKEGDHIIEVNSVNICNE 69
+LC + K + GYGF+L+ +G G +I +V +G PA+ AGL++ D IIEVN VN+ +E
Sbjct: 5 KLCRLAKGEN--GYGFHLNAIRGLPGSFIKEVQKGGPADLAGLEDEDVIIEVNGVNVLDE 62
Query: 70 NHNQVVQRIKAVPDETKLLV 89
+ +VV RI++ LLV
Sbjct: 63 PYEKVVDRIQSSGKNVTLLV 82
>pdb|4F8K|A Chain A, Molecular Analysis Of The Interaction Between The
Prostacyclin Receptor And The First Pdz Domain Of Pdzk1
pdb|4F8K|B Chain B, Molecular Analysis Of The Interaction Between The
Prostacyclin Receptor And The First Pdz Domain Of Pdzk1
Length = 109
Score = 62.0 bits (149), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 47/83 (56%)
Query: 23 YGFNLHGEKGKTGQYIGKVDEGSPAEAAGLKEGDHIIEVNSVNICNENHNQVVQRIKAVP 82
YGF L EK G I ++EGSPAE AGL +GD ++ +N V + E H QVV+ ++
Sbjct: 16 YGFFLRIEKDTDGHLIRVIEEGSPAEKAGLLDGDRVLRINGVFVDKEEHAQVVELVRKSG 75
Query: 83 DETKLLVVDVASEEYFKSNNITI 105
+ LLV+D S E N + +
Sbjct: 76 NSVTLLVLDGDSYEKAVKNQVDL 98
>pdb|2EDZ|A Chain A, Solution Structures Of The Pdz Domain Of Mus Musculus Pdz
Domain-Containing Protein 1
Length = 114
Score = 62.0 bits (149), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 47/83 (56%)
Query: 23 YGFNLHGEKGKTGQYIGKVDEGSPAEAAGLKEGDHIIEVNSVNICNENHNQVVQRIKAVP 82
YGF L EK G I ++EGSPAE AGL +GD ++ +N V + E H QVV+ ++
Sbjct: 27 YGFFLRIEKDTDGHLIRVIEEGSPAEKAGLLDGDRVLRINGVFVDKEEHAQVVELVRKSG 86
Query: 83 DETKLLVVDVASEEYFKSNNITI 105
+ LLV+D S E N + +
Sbjct: 87 NSVTLLVLDGDSYEKAVKNQVDL 109
>pdb|3NGH|A Chain A, Molecular Analysis Of The Interaction Of The Hdl Receptor
Sr-Bi With The Adaptor Protein Pdzk1
pdb|3NGH|B Chain B, Molecular Analysis Of The Interaction Of The Hdl Receptor
Sr-Bi With The Adaptor Protein Pdzk1
Length = 106
Score = 62.0 bits (149), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 47/83 (56%)
Query: 23 YGFNLHGEKGKTGQYIGKVDEGSPAEAAGLKEGDHIIEVNSVNICNENHNQVVQRIKAVP 82
YGF L EK G I ++EGSPAE AGL +GD ++ +N V + E H QVV+ ++
Sbjct: 15 YGFFLRIEKDTDGHLIRVIEEGSPAEKAGLLDGDRVLRINGVFVDKEEHAQVVELVRKSG 74
Query: 83 DETKLLVVDVASEEYFKSNNITI 105
+ LLV+D S E N + +
Sbjct: 75 NSVTLLVLDGDSYEKAVKNQVDL 97
>pdb|2D90|A Chain A, Solution Structure Of The Third Pdz Domain Of Pdz Domain
Containing Protein 1
Length = 102
Score = 61.2 bits (147), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 48/78 (61%)
Query: 21 DGYGFNLHGEKGKTGQYIGKVDEGSPAEAAGLKEGDHIIEVNSVNICNENHNQVVQRIKA 80
+GYGF L + GQ I ++ GSPAEAAGLK D ++ VN ++ +H+ VV+ I+
Sbjct: 17 NGYGFYLRAGPEQKGQIIKDIEPGSPAEAAGLKNNDLVVAVNGKSVEALDHDGVVEMIRK 76
Query: 81 VPDETKLLVVDVASEEYF 98
D+T LLV+D +E +
Sbjct: 77 GGDQTTLLVLDKEAESIY 94
>pdb|3R69|A Chain A, Molecular Analysis Of The Interaction Of The
Hdl-Receptor Sr-Bi With The Pdz3 Domain Of Its Adaptor
Protein Pdzk1
pdb|3R69|B Chain B, Molecular Analysis Of The Interaction Of The
Hdl-Receptor Sr-Bi With The Pdz3 Domain Of Its Adaptor
Protein Pdzk1
Length = 89
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 45/71 (63%)
Query: 21 DGYGFNLHGEKGKTGQYIGKVDEGSPAEAAGLKEGDHIIEVNSVNICNENHNQVVQRIKA 80
+GYGF L + GQ I ++ GSPAEAAGLK D ++ VN ++ +H+ VV+ I+
Sbjct: 13 NGYGFYLRAGPEQKGQIIKDIEPGSPAEAAGLKNNDLVVAVNGKSVEALDHDGVVEMIRK 72
Query: 81 VPDETKLLVVD 91
D+T LLV+D
Sbjct: 73 GGDQTTLLVLD 83
>pdb|3R68|A Chain A, Molecular Analysis Of The Pdz3 Domain Of Pdzk1
Length = 95
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 45/71 (63%)
Query: 21 DGYGFNLHGEKGKTGQYIGKVDEGSPAEAAGLKEGDHIIEVNSVNICNENHNQVVQRIKA 80
+GYGF L + GQ I ++ GSPAEAAGLK D ++ VN ++ +H+ VV+ I+
Sbjct: 16 NGYGFYLRAGPEQKGQIIKDIEPGSPAEAAGLKNNDLVVAVNGKSVEALDHDGVVEMIRK 75
Query: 81 VPDETKLLVVD 91
D+T LLV+D
Sbjct: 76 GGDQTTLLVLD 86
>pdb|3QE1|A Chain A, Crystal Structure Of Pdz Domain Of Sorting Nexin 27
(Snx27) Fused To The C-Terminal Residues (Eseskv) Of
Girk3
Length = 107
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 51/99 (51%), Gaps = 15/99 (15%)
Query: 10 RLCHILKWTDFDGYGFNLHGEKGKTGQ-------------YIGKVDEGSPAEAAGLKEGD 56
R+ I+K GYGFN+ G+ + GQ ++ V G A+ AG+++GD
Sbjct: 8 RVVRIVKSES--GYGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLPGGAADRAGVRKGD 65
Query: 57 HIIEVNSVNICNENHNQVVQRIKAVPDETKLLVVDVASE 95
I+EVN VN+ H QVV I+A E L V+ V SE
Sbjct: 66 RILEVNGVNVEGATHKQVVDLIRAGEKELILTVLSVESE 104
>pdb|3QDO|A Chain A, Crystal Structure Of Pdz Domain Of Sorting Nexin 27
(Snx27) Fused To The Gly-Gly Linker Followed By
C-Terminal (Eseskv) Of Girk3
Length = 109
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 50/99 (50%), Gaps = 15/99 (15%)
Query: 10 RLCHILKWTDFDGYGFNLHGEKGKTGQ-------------YIGKVDEGSPAEAAGLKEGD 56
R+ I+K GYGFN+ G+ + GQ ++ V G A+ AG+++GD
Sbjct: 8 RVVRIVKSES--GYGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLPGGAADRAGVRKGD 65
Query: 57 HIIEVNSVNICNENHNQVVQRIKAVPDETKLLVVDVASE 95
I+EVN VN+ H QVV I+A E L V+ V E
Sbjct: 66 RILEVNGVNVEGATHKQVVDLIRAGEKELILTVLSVGGE 104
>pdb|1Q3O|A Chain A, Crystal Structure Of The Shank Pdz-ligand Complex
Reveals A Class I Pdz Interaction And A Novel Pdz-pdz
Dimerization
pdb|1Q3O|B Chain B, Crystal Structure Of The Shank Pdz-ligand Complex
Reveals A Class I Pdz Interaction And A Novel Pdz-pdz
Dimerization
pdb|1Q3P|A Chain A, Crystal Structure Of The Shank Pdz-Ligand Complex
Reveals A Class I Pdz Interaction And A Novel Pdz-Pdz
Dimerization
pdb|1Q3P|B Chain B, Crystal Structure Of The Shank Pdz-Ligand Complex
Reveals A Class I Pdz Interaction And A Novel Pdz-Pdz
Dimerization
Length = 109
Score = 54.7 bits (130), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 41/79 (51%), Gaps = 13/79 (16%)
Query: 14 ILKWTDFDGYGFNLHGEKGKTG-------------QYIGKVDEGSPAEAAGLKEGDHIIE 60
+L+ D +G+GF L G K +T QY+ VDEG A AGL+ GD +IE
Sbjct: 12 LLQKKDSEGFGFVLRGAKAQTPIEEFTPTPAFPALQYLESVDEGGVAWRAGLRMGDFLIE 71
Query: 61 VNSVNICNENHNQVVQRIK 79
VN N+ H QVV I+
Sbjct: 72 VNGQNVVKVGHRQVVNMIR 90
>pdb|3L4F|D Chain D, Crystal Structure Of Betapix Coiled-Coil Domain And Shank
Pdz Complex
Length = 132
Score = 54.7 bits (130), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 41/79 (51%), Gaps = 13/79 (16%)
Query: 14 ILKWTDFDGYGFNLHGEKGKTG-------------QYIGKVDEGSPAEAAGLKEGDHIIE 60
+L+ D +G+GF L G K +T QY+ VDEG A AGL+ GD +IE
Sbjct: 32 LLQKKDSEGFGFVLRGAKAQTPIEEFTPTPAFPALQYLESVDEGGVAWRAGLRMGDFLIE 91
Query: 61 VNSVNICNENHNQVVQRIK 79
VN N+ H QVV I+
Sbjct: 92 VNGQNVVKVGHRQVVNMIR 110
>pdb|3QJM|A Chain A, Structural Flexibility Of Shank Pdz Domain Is Important
For Its Binding To Different Ligands
pdb|3QJM|B Chain B, Structural Flexibility Of Shank Pdz Domain Is Important
For Its Binding To Different Ligands
pdb|3QJN|A Chain A, Structural Flexibility Of Shank Pdz Domain Is Important
For Its Binding To Different Ligands
pdb|3QJN|B Chain B, Structural Flexibility Of Shank Pdz Domain Is Important
For Its Binding To Different Ligands
pdb|3QJN|C Chain C, Structural Flexibility Of Shank Pdz Domain Is Important
For Its Binding To Different Ligands
pdb|3QJN|D Chain D, Structural Flexibility Of Shank Pdz Domain Is Important
For Its Binding To Different Ligands
pdb|3QJN|E Chain E, Structural Flexibility Of Shank Pdz Domain Is Important
For Its Binding To Different Ligands
pdb|3QJN|F Chain F, Structural Flexibility Of Shank Pdz Domain Is Important
For Its Binding To Different Ligands
pdb|3QJN|G Chain G, Structural Flexibility Of Shank Pdz Domain Is Important
For Its Binding To Different Ligands
pdb|3QJN|H Chain H, Structural Flexibility Of Shank Pdz Domain Is Important
For Its Binding To Different Ligands
Length = 115
Score = 54.3 bits (129), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 41/79 (51%), Gaps = 13/79 (16%)
Query: 14 ILKWTDFDGYGFNLHGEKGKTG-------------QYIGKVDEGSPAEAAGLKEGDHIIE 60
+L+ D +G+GF L G K +T QY+ VDEG A AGL+ GD +IE
Sbjct: 12 LLQKKDSEGFGFVLRGAKAQTPIEEFTPTPAFPALQYLESVDEGGVAWRAGLRMGDFLIE 71
Query: 61 VNSVNICNENHNQVVQRIK 79
VN N+ H QVV I+
Sbjct: 72 VNGQNVVKVGHRQVVNMIR 90
>pdb|2EEI|A Chain A, Solution Structure Of Second Pdz Domain Of Pdz Domain
Containing Protein 1
Length = 106
Score = 54.3 bits (129), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 47/82 (57%), Gaps = 2/82 (2%)
Query: 10 RLCHILKWTDFDGYGFNLHGEKGKTGQYIGKVDEGSPAEAAGLKEGDHIIEVNSVNICNE 69
RLC+++K + YGF+L +GK G Y+ + A AG+ DH+IEVN N+ +
Sbjct: 10 RLCYLVK--EGGSYGFSLKTVQGKKGVYMTDITPQGVAMRAGVLADDHLIEVNGENVEDA 67
Query: 70 NHNQVVQRIKAVPDETKLLVVD 91
+H +VV+++K L+VD
Sbjct: 68 SHEEVVEKVKKSGSRVMFLLVD 89
>pdb|3QGL|A Chain A, Crystal Structure Of Pdz Domain Of Sorting Nexin 27
(Snx27) In Complex With The Eseskv Peptide Corresponding
To The C-Terminal Tail Of Girk3
pdb|3QGL|B Chain B, Crystal Structure Of Pdz Domain Of Sorting Nexin 27
(Snx27) In Complex With The Eseskv Peptide Corresponding
To The C-Terminal Tail Of Girk3
pdb|3QGL|C Chain C, Crystal Structure Of Pdz Domain Of Sorting Nexin 27
(Snx27) In Complex With The Eseskv Peptide Corresponding
To The C-Terminal Tail Of Girk3
pdb|3QGL|D Chain D, Crystal Structure Of Pdz Domain Of Sorting Nexin 27
(Snx27) In Complex With The Eseskv Peptide Corresponding
To The C-Terminal Tail Of Girk3
pdb|3QGL|E Chain E, Crystal Structure Of Pdz Domain Of Sorting Nexin 27
(Snx27) In Complex With The Eseskv Peptide Corresponding
To The C-Terminal Tail Of Girk3
Length = 101
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 49/96 (51%), Gaps = 15/96 (15%)
Query: 10 RLCHILKWTDFDGYGFNLHGEKGKTGQ-------------YIGKVDEGSPAEAAGLKEGD 56
R+ I+K GYGFN+ G+ + GQ ++ V G A+ AG+++GD
Sbjct: 8 RVVRIVKSES--GYGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLPGGAADRAGVRKGD 65
Query: 57 HIIEVNSVNICNENHNQVVQRIKAVPDETKLLVVDV 92
I+EVN VN+ H QVV I+A E L V+ V
Sbjct: 66 RILEVNGVNVEGATHKQVVDLIRAGEKELILTVLSV 101
>pdb|2V90|A Chain A, Crystal Structure Of The 3rd Pdz Domain Of Intestine-
And Kidney-enriched Pdz Domain Ikepp (pdzd3)
pdb|2V90|B Chain B, Crystal Structure Of The 3rd Pdz Domain Of Intestine-
And Kidney-enriched Pdz Domain Ikepp (pdzd3)
pdb|2V90|C Chain C, Crystal Structure Of The 3rd Pdz Domain Of Intestine-
And Kidney-enriched Pdz Domain Ikepp (pdzd3)
pdb|2V90|D Chain D, Crystal Structure Of The 3rd Pdz Domain Of Intestine-
And Kidney-enriched Pdz Domain Ikepp (pdzd3)
pdb|2V90|E Chain E, Crystal Structure Of The 3rd Pdz Domain Of Intestine-
And Kidney-enriched Pdz Domain Ikepp (pdzd3)
pdb|2V90|F Chain F, Crystal Structure Of The 3rd Pdz Domain Of Intestine-
And Kidney-enriched Pdz Domain Ikepp (pdzd3)
Length = 96
Score = 50.4 bits (119), Expect = 1e-06, Method: Composition-based stats.
Identities = 27/73 (36%), Positives = 41/73 (56%), Gaps = 3/73 (4%)
Query: 22 GYGFNLHGEKG---KTGQYIGKVDEGSPAEAAGLKEGDHIIEVNSVNICNENHNQVVQRI 78
G+GF L EKG + GQ++ +VD G PA+ AG++ GD ++ V ++ H + V RI
Sbjct: 15 GFGFLLREEKGLDGRPGQFLWEVDPGLPAKKAGMQAGDRLVAVAGESVEGLGHEETVSRI 74
Query: 79 KAVPDETKLLVVD 91
+ L VVD
Sbjct: 75 QGQGSCVSLTVVD 87
>pdb|2VZ5|A Chain A, Structure Of The Pdz Domain Of Tax1 (Human T-Cell Leukemia
Virus Type I) Binding Protein 3
Length = 139
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 36/61 (59%)
Query: 30 EKGKTGQYIGKVDEGSPAEAAGLKEGDHIIEVNSVNICNENHNQVVQRIKAVPDETKLLV 89
+K G Y+ +V EG PAE AGL+ GD I++VN ++ H+Q +R+ +E L+
Sbjct: 60 DKTDKGIYVTRVSEGGPAEIAGLQIGDKIMQVNGWDMTMVTHDQARKRLTKRSEEVVRLL 119
Query: 90 V 90
V
Sbjct: 120 V 120
>pdb|3DIW|A Chain A, C-Terminal Beta-Catenin Bound Tip-1 Structure
pdb|3DIW|B Chain B, C-Terminal Beta-Catenin Bound Tip-1 Structure
pdb|3DJ1|A Chain A, Crystal Structure Of Tip-1 Wild Type
pdb|3DJ1|B Chain B, Crystal Structure Of Tip-1 Wild Type
Length = 124
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 36/61 (59%)
Query: 30 EKGKTGQYIGKVDEGSPAEAAGLKEGDHIIEVNSVNICNENHNQVVQRIKAVPDETKLLV 89
+K G Y+ +V EG PAE AGL+ GD I++VN ++ H+Q +R+ +E L+
Sbjct: 49 DKTDKGIYVTRVSEGGPAEIAGLQIGDKIMQVNGWDMTMVTHDQARKRLTKRSEEVVRLL 108
Query: 90 V 90
V
Sbjct: 109 V 109
>pdb|3GJ9|A Chain A, Crystal Structure Of Tip-1 In Complex With C-Terminal Of
Kir2.3
pdb|3GJ9|B Chain B, Crystal Structure Of Tip-1 In Complex With C-Terminal Of
Kir2.3
pdb|2L4S|A Chain A, Promiscuous Binding At The Crossroads Of Numerous Cancer
Pathways: Insight From The Binding Of Gip With
Glutaminase L
pdb|2L4T|A Chain A, GipGLUTAMINASE L PEPTIDE COMPLEX
Length = 124
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 36/61 (59%)
Query: 30 EKGKTGQYIGKVDEGSPAEAAGLKEGDHIIEVNSVNICNENHNQVVQRIKAVPDETKLLV 89
+K G Y+ +V EG PAE AGL+ GD I++VN ++ H+Q +R+ +E L+
Sbjct: 49 DKTDKGIYVTRVSEGGPAEIAGLQIGDKIMQVNGWDMTMVTHDQARKRLTKRSEEVVRLL 108
Query: 90 V 90
V
Sbjct: 109 V 109
>pdb|1TP3|A Chain A, Pdz3 Domain Of Psd-95 Protein Complexed With Kketpv
Peptide Ligand
pdb|1TP5|A Chain A, Crystal Structure Of Pdz3 Domain Of Psd-95 Protein
Complexed With A Peptide Ligand Kketwv
pdb|1TQ3|A Chain A, Higher Resolution Crystal Structure Of The Third Pdz
Domain Of Post Synaptic Psd-95 Protein
Length = 119
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 49/90 (54%), Gaps = 4/90 (4%)
Query: 22 GYGFNLHGEKGKTGQYIGKVDEGSPAEAAG-LKEGDHIIEVNSVNICNENHNQVVQRIKA 80
G GFN+ G + G +I + G PA+ +G L++GD I+ VN V++ N +H Q +K
Sbjct: 26 GLGFNIVGGEDGEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKN 85
Query: 81 VPDETKLLVVDVASEEY--FKSNNITISSS 108
+T ++ EEY F++N+ SS
Sbjct: 86 A-GQTVTIIAQYKPEEYSRFEANSRVDSSG 114
>pdb|2KG2|A Chain A, Solution Structure Of A Pdz Protein
Length = 124
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 36/61 (59%)
Query: 30 EKGKTGQYIGKVDEGSPAEAAGLKEGDHIIEVNSVNICNENHNQVVQRIKAVPDETKLLV 89
+K G Y+ +V EG PAE AGL+ GD I++VN ++ H+Q +R+ +E L+
Sbjct: 49 DKTDKGIYVTRVSEGGPAEIAGLQIGDKIMQVNGWDMTMVTHDQARKRLTKRSEEVVRLL 108
Query: 90 V 90
V
Sbjct: 109 V 109
>pdb|3DJ3|A Chain A, Crystal Structure Of C-Terminal Truncated Tip-1 (6-113)
pdb|3DJ3|B Chain B, Crystal Structure Of C-Terminal Truncated Tip-1 (6-113)
pdb|3DJ3|C Chain C, Crystal Structure Of C-Terminal Truncated Tip-1 (6-113)
pdb|3DJ3|D Chain D, Crystal Structure Of C-Terminal Truncated Tip-1 (6-113)
Length = 113
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 36/61 (59%)
Query: 30 EKGKTGQYIGKVDEGSPAEAAGLKEGDHIIEVNSVNICNENHNQVVQRIKAVPDETKLLV 89
+K G Y+ +V EG PAE AGL+ GD I++VN ++ H+Q +R+ +E L+
Sbjct: 50 DKTDKGIYVTRVSEGGPAEIAGLQIGDKIMQVNGWDMTMVTHDQARKRLTKRSEEVVRLL 109
Query: 90 V 90
V
Sbjct: 110 V 110
>pdb|3SFJ|A Chain A, Crystal Structure Of Tax-Interacting Protein-1 (Tip-1) Pdz
Domain Bound To Ical36 Inhibitor Peptide
pdb|3SFJ|C Chain C, Crystal Structure Of Tax-Interacting Protein-1 (Tip-1) Pdz
Domain Bound To Ical36 Inhibitor Peptide
Length = 104
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 36/61 (59%)
Query: 30 EKGKTGQYIGKVDEGSPAEAAGLKEGDHIIEVNSVNICNENHNQVVQRIKAVPDETKLLV 89
+K G Y+ +V EG PAE AGL+ GD I++VN ++ H+Q +R+ +E L+
Sbjct: 41 DKTDKGIYVTRVSEGGPAEIAGLQIGDKIMQVNGWDMTMVTHDQARKRLTKRSEEVVRLL 100
Query: 90 V 90
V
Sbjct: 101 V 101
>pdb|1UM7|A Chain A, Solution Structure Of The Third Pdz Domain Of Synapse-
Associated Protein 102
Length = 113
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 40/77 (51%), Gaps = 2/77 (2%)
Query: 22 GYGFNLHGEKGKTGQYIGKVDEGSPAEAAG-LKEGDHIIEVNSVNICNENHNQVVQRIKA 80
G GFN+ G + G ++ + G PA+ +G L+ GD I+ VN VN+ N H Q +K
Sbjct: 27 GLGFNIVGGEDGEGIFVSFILAGGPADLSGELRRGDRILSVNGVNLRNATHEQAAAALKR 86
Query: 81 VPDETKLLVVDVASEEY 97
++ +V EEY
Sbjct: 87 A-GQSVTIVAQYRPEEY 102
>pdb|2XKX|A Chain A, Single Particle Analysis Of Psd-95 In Negative Stain
pdb|2XKX|B Chain B, Single Particle Analysis Of Psd-95 In Negative Stain
Length = 721
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 42/77 (54%), Gaps = 2/77 (2%)
Query: 22 GYGFNLHGEKGKTGQYIGKVDEGSPAEAAG-LKEGDHIIEVNSVNICNENHNQVVQRIKA 80
G GFN+ G + G +I + G PA+ +G L++GD I+ VN V++ N +H Q +K
Sbjct: 319 GLGFNIVGGEDGEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKN 378
Query: 81 VPDETKLLVVDVASEEY 97
+T ++ EEY
Sbjct: 379 A-GQTVTIIAQYKPEEY 394
Score = 32.7 bits (73), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 43/100 (43%), Gaps = 17/100 (17%)
Query: 22 GYGFNLHGE------KGKTGQYIGKVDEGSPAEAAG-LKEGDHIIEVNSVNICNENHNQV 74
G GF++ G G Y+ K+ EG A G L+ GD I+ VNSV + + H
Sbjct: 166 GLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVGLEDVMHEDA 225
Query: 75 VQRIKAVPDETKLLVVDVASEEYFKSNNITISSSL--PDI 112
V +K D L V K +N +S S PDI
Sbjct: 226 VAALKNTYDVVYLKVA--------KPSNAYLSDSYAPPDI 257
>pdb|4E3B|A Chain A, Crystal Structure Of Tax-Interacting Protein-1 (Tip-1)
Pdz Domain Bound To Ical36-L (Ansrwptsil) Peptide
pdb|4E3B|B Chain B, Crystal Structure Of Tax-Interacting Protein-1 (Tip-1)
Pdz Domain Bound To Ical36-L (Ansrwptsil) Peptide
Length = 102
Score = 45.8 bits (107), Expect = 3e-05, Method: Composition-based stats.
Identities = 23/61 (37%), Positives = 36/61 (59%)
Query: 30 EKGKTGQYIGKVDEGSPAEAAGLKEGDHIIEVNSVNICNENHNQVVQRIKAVPDETKLLV 89
+K G Y+ +V EG PAE AGL+ GD I++VN ++ H+Q +R+ +E L+
Sbjct: 39 DKTDKGIYVTRVSEGGPAEIAGLQIGDKIMQVNGWDMTMVTHDQARKRLTKRSEEVVRLL 98
Query: 90 V 90
V
Sbjct: 99 V 99
>pdb|2DKR|A Chain A, Solution Structure Of The Pdz Domain From Human Lin-7
Homolog B
Length = 93
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 43/77 (55%), Gaps = 3/77 (3%)
Query: 15 LKWTDFDGYGFNLHGEKGKTGQ-YIGKVDEGSPAEA-AGLKEGDHIIEVNSVNICNENHN 72
L TD +G GFN+ G K + YI +V G A+ GLK GD ++ VN V++ E H
Sbjct: 11 LPKTD-EGLGFNIMGGKEQNSPIYISRVIPGGVADRHGGLKRGDQLLSVNGVSVEGEQHE 69
Query: 73 QVVQRIKAVPDETKLLV 89
+ V+ +KA KL+V
Sbjct: 70 KAVELLKAAQGSVKLVV 86
>pdb|1UEZ|A Chain A, Solution Structure Of The First Pdz Domain Of Human
Kiaa1526 Protein
Length = 101
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 47/88 (53%), Gaps = 7/88 (7%)
Query: 9 VRLCHILKWTDFDGYGFNLHG--EKGKTGQYIGKVDEGSPAEAAGLKEGDHIIEVNSVNI 66
VRL + + +G GF++ G E G G Y+ V+ GS AE GL+ GD I+ VN ++
Sbjct: 9 VRLVSLRRAKAHEGLGFSIRGGSEHG-VGIYVSLVEPGSLAEKEGLRVGDQILRVNDKSL 67
Query: 67 CNENHNQVVQRIKAVPDETKLLVVDVAS 94
H + V+ +K +K LV+ V S
Sbjct: 68 ARVTHAEAVKALKG----SKKLVLSVYS 91
>pdb|1BE9|A Chain A, The Third Pdz Domain From The Synaptic Protein Psd-95 In
Complex With A C-Terminal Peptide Derived From Cript.
pdb|1BFE|A Chain A, The Third Pdz Domain From The Synaptic Protein Psd-95
Length = 119
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 49/90 (54%), Gaps = 4/90 (4%)
Query: 22 GYGFNLHGEKGKTGQYIGKVDEGSPAEAAG-LKEGDHIIEVNSVNICNENHNQVVQRIKA 80
G GFN+ G + G +I + G PA+ +G L++GD I+ VN V++ N +H Q +K
Sbjct: 26 GLGFNIIGGEDGEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKN 85
Query: 81 VPDETKLLVVDVASEEY--FKSNNITISSS 108
+T ++ EEY F++N+ SS
Sbjct: 86 A-GQTVTIIAQYKPEEYSRFEANSRVNSSG 114
>pdb|3JXT|A Chain A, Crystal Structure Of The Third Pdz Domain Of Sap-102 In
Complex With A Fluorogenic Peptide-Based Ligand
pdb|3JXT|B Chain B, Crystal Structure Of The Third Pdz Domain Of Sap-102 In
Complex With A Fluorogenic Peptide-Based Ligand
Length = 104
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 40/77 (51%), Gaps = 2/77 (2%)
Query: 22 GYGFNLHGEKGKTGQYIGKVDEGSPAEAAG-LKEGDHIIEVNSVNICNENHNQVVQRIKA 80
G GFN+ G + G ++ + G PA+ +G L+ GD I+ VN VN+ N H Q +K
Sbjct: 24 GLGFNIVGGEDGEGIFVSFILAGGPADLSGELRRGDRILSVNGVNLRNATHEQAAAALKR 83
Query: 81 VPDETKLLVVDVASEEY 97
++ +V EEY
Sbjct: 84 A-GQSVTIVAQYRPEEY 99
>pdb|1UF1|A Chain A, Solution Structure Of The Second Pdz Domain Of Human
Kiaa1526 Protein
Length = 128
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 30/46 (65%)
Query: 35 GQYIGKVDEGSPAEAAGLKEGDHIIEVNSVNICNENHNQVVQRIKA 80
G YI VD GS AE +GLK GD I+EVN + N H++ V+ +K+
Sbjct: 47 GIYITGVDPGSEAEGSGLKVGDQILEVNGRSFLNILHDEAVRLLKS 92
>pdb|3I4W|A Chain A, Crystal Structure Of The Third Pdz Domain Of Psd-95
pdb|3I4W|B Chain B, Crystal Structure Of The Third Pdz Domain Of Psd-95
pdb|3I4W|C Chain C, Crystal Structure Of The Third Pdz Domain Of Psd-95
pdb|3I4W|D Chain D, Crystal Structure Of The Third Pdz Domain Of Psd-95
Length = 104
Score = 44.7 bits (104), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 42/77 (54%), Gaps = 2/77 (2%)
Query: 22 GYGFNLHGEKGKTGQYIGKVDEGSPAEAAG-LKEGDHIIEVNSVNICNENHNQVVQRIKA 80
G GFN+ G + G +I + G PA+ +G L++GD I+ VN V++ N +H Q +K
Sbjct: 23 GLGFNIVGGEXGEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKN 82
Query: 81 VPDETKLLVVDVASEEY 97
+T ++ EEY
Sbjct: 83 A-GQTVTIIAQYKPEEY 98
>pdb|3K82|A Chain A, Crystal Structure Of The Third Pdz Domain Of Psd-95
Length = 98
Score = 44.7 bits (104), Expect = 7e-05, Method: Composition-based stats.
Identities = 26/77 (33%), Positives = 42/77 (54%), Gaps = 2/77 (2%)
Query: 22 GYGFNLHGEKGKTGQYIGKVDEGSPAEAAG-LKEGDHIIEVNSVNICNENHNQVVQRIKA 80
G GFN+ G + G +I + G PA+ +G L++GD I+ VN V++ N +H Q +K
Sbjct: 18 GLGFNIVGGEXGEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKN 77
Query: 81 VPDETKLLVVDVASEEY 97
+T ++ EEY
Sbjct: 78 A-GQTVTIIAQYKPEEY 93
>pdb|2DLS|A Chain A, Solution Structure Of The Pdz Domain Of Human Rho
Guanine Nucleotide Exchange Factor 11
Length = 93
Score = 44.3 bits (103), Expect = 8e-05, Method: Composition-based stats.
Identities = 28/72 (38%), Positives = 42/72 (58%), Gaps = 4/72 (5%)
Query: 9 VRLCHILKWTDFDGYGFNLHGEKGKTGQYIGKVDEGSPAEAAGLKEGDHIIEVNSVNICN 68
V+ C I++ D G+GF + G++ Q V G A AG+KEGD II+VN + N
Sbjct: 8 VQRCVIIQ-KDQHGFGFTVSGDRIVLVQ---SVRPGGAAMKAGVKEGDRIIKVNGTMVTN 63
Query: 69 ENHNQVVQRIKA 80
+H +VV+ IK+
Sbjct: 64 SSHLEVVKLIKS 75
>pdb|2KV8|A Chain A, Solution Structure Ofrgs12 Pdz Domain
Length = 83
Score = 44.3 bits (103), Expect = 8e-05, Method: Composition-based stats.
Identities = 23/57 (40%), Positives = 32/57 (56%), Gaps = 3/57 (5%)
Query: 22 GYGFNLHGEKGKTGQYIGKVDEGSPAEAAGLKEGDHIIEVNSVNICNENHNQVVQRI 78
GYGF L G+ + V GSPA+ GL+ GD I+ VN +N+ +H VV+ I
Sbjct: 14 GYGFTLSGQAPCV---LSCVMRGSPADFVGLRAGDQILAVNEINVKKASHEDVVKLI 67
>pdb|3BPU|A Chain A, Crystal Structure Of The 3rd Pdz Domain Of Human
Membrane Associated Guanylate Kinase, C677s And C709s
Double Mutant
Length = 88
Score = 43.9 bits (102), Expect = 1e-04, Method: Composition-based stats.
Identities = 29/70 (41%), Positives = 39/70 (55%), Gaps = 4/70 (5%)
Query: 22 GYGFNLHGEKGKTGQYIGKVDEGSPAEAAGLKEGDHIIEVNSVNICNENHNQVVQRIKAV 81
G+GF + G GQ + ++ + SP + GLKEGD I+EVN N+ HNQVV +
Sbjct: 15 GFGFTIADSPGGGGQRVKQIVD-SP-RSRGLKEGDLIVEVNKKNVQALTHNQVVDMLVES 72
Query: 82 P--DETKLLV 89
P E LLV
Sbjct: 73 PKGSEVTLLV 82
>pdb|1X5Q|A Chain A, Solution Structure Of The First Pdz Domain Of Scribble
Homolog Protein (Hscrib)
Length = 110
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 43/83 (51%), Gaps = 9/83 (10%)
Query: 14 ILKWTDFDGYGFNLHGEKGKT-------GQYIGKVDEGSPAEAAGLKEGDHIIEVNSVNI 66
IL+ T G G ++ G KG T G +I +V E PA AG++ GD ++EVN V +
Sbjct: 21 ILRQTG--GLGISIAGGKGSTPYKGDDEGIFISRVSEEGPAARAGVRVGDKLLEVNGVAL 78
Query: 67 CNENHNQVVQRIKAVPDETKLLV 89
H++ V+ ++ ++ V
Sbjct: 79 QGAEHHEAVEALRGAGTAVQMRV 101
>pdb|1WI2|A Chain A, Solution Structure Of The Pdz Domain From Riken Cdna
2700099c19
Length = 104
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Query: 24 GFNLHGEKG-KTGQYIGKVDEGSPAEAAGLKEGDHIIEVNSVNICNENHNQVVQRIK 79
GFN+ G K + G +I KV S A AGL+EGD ++ VN V+ + H++ V+ +K
Sbjct: 30 GFNIRGGKASQLGIFISKVIPDSDAHRAGLQEGDQVLAVNDVDFQDIEHSKAVEILK 86
>pdb|2W4F|A Chain A, Crystal Structure Of The First Pdz Domain Of Human
Scrib1
Length = 97
Score = 42.0 bits (97), Expect = 4e-04, Method: Composition-based stats.
Identities = 23/75 (30%), Positives = 39/75 (52%), Gaps = 7/75 (9%)
Query: 22 GYGFNLHGEKGKT-------GQYIGKVDEGSPAEAAGLKEGDHIIEVNSVNICNENHNQV 74
G G ++ G KG T G +I +V E PA AG++ GD ++EVN V + H++
Sbjct: 15 GLGISIAGGKGSTPYKGDDEGIFISRVSEEGPAARAGVRVGDKLLEVNGVALQGAEHHEA 74
Query: 75 VQRIKAVPDETKLLV 89
V+ ++ ++ V
Sbjct: 75 VEALRGAGTAVQMRV 89
>pdb|3TSW|A Chain A, Crystal Structure Of The Pdz3-Sh3-Guk Core Module Of Human
Zo-1
pdb|3TSW|C Chain C, Crystal Structure Of The Pdz3-Sh3-Guk Core Module Of Human
Zo-1
pdb|3TSW|D Chain D, Crystal Structure Of The Pdz3-Sh3-Guk Core Module Of Human
Zo-1
pdb|3TSZ|A Chain A, Crystal Structure Of Pdz3-Sh3-Guk Core Module From Human
Zo-1 In Complex With 12mer Peptide From Human Jam-A
Cytoplasmic Tail
Length = 391
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 51/104 (49%), Gaps = 4/104 (3%)
Query: 14 ILKWTDFDGYGFNLHGEKGKTGQYIGKVDEGSPAEAAGLKEGDHIIEVNSVNICNENHNQ 73
++K+ D G L G G ++ V E SPA GL+EGD I+ VN+V+ N +
Sbjct: 12 LVKFRKGDSVGLRLAG-GNDVGIFVAGVLEDSPAAKEGLEEGDQILRVNNVDFTNIIREE 70
Query: 74 VVQRIKAVPDETKLLVVDVASEEYFKSNNITISSSLPDIVHLRT 117
V + +P ++ ++ ++ ++ + S + D ++RT
Sbjct: 71 AVLFLLDLPKGEEVTILAQKKKDVYRR---IVESDVGDSFYIRT 111
>pdb|3SHW|A Chain A, Crystal Structure Of Zo-1 Pdz3-Sh3-Guk Supramodule Complex
With Connexin-45 Peptide
Length = 468
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 51/104 (49%), Gaps = 4/104 (3%)
Query: 14 ILKWTDFDGYGFNLHGEKGKTGQYIGKVDEGSPAEAAGLKEGDHIIEVNSVNICNENHNQ 73
++K+ D G L G G ++ V E SPA GL+EGD I+ VN+V+ N +
Sbjct: 4 LVKFRKGDSVGLRLAG-GNDVGIFVAGVLEDSPAAKEGLEEGDQILRVNNVDFTNIIREE 62
Query: 74 VVQRIKAVPDETKLLVVDVASEEYFKSNNITISSSLPDIVHLRT 117
V + +P ++ ++ ++ ++ + S + D ++RT
Sbjct: 63 AVLFLLDLPKGEEVTILAQKKKDVYRR---IVESDVGDSFYIRT 103
>pdb|3TSW|B Chain B, Crystal Structure Of The Pdz3-Sh3-Guk Core Module Of Human
Zo-1
Length = 194
Score = 40.8 bits (94), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 51/106 (48%), Gaps = 4/106 (3%)
Query: 12 CHILKWTDFDGYGFNLHGEKGKTGQYIGKVDEGSPAEAAGLKEGDHIIEVNSVNICNENH 71
++K+ D G L G G ++ V E SPA GL+EGD I+ VN+V+ N
Sbjct: 3 MKLVKFRKGDSVGLRLAG-GNDVGIFVAGVLEDSPAAKEGLEEGDQILRVNNVDFTNIIR 61
Query: 72 NQVVQRIKAVPDETKLLVVDVASEEYFKSNNITISSSLPDIVHLRT 117
+ V + +P ++ ++ ++ ++ + S + D ++RT
Sbjct: 62 EEAVLFLLDLPKGEEVTILAQKKKDVYRR---IVESDVGDSFYIRT 104
>pdb|1X5N|A Chain A, Solution Structure Of The Second Pdz Domain Of Harmonin
Protein
Length = 114
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 37/69 (53%), Gaps = 1/69 (1%)
Query: 33 KTGQYIGKVDEGSPAEAAGLKEGDHIIEVNSVNICNENHNQVVQRIKAVPDETKLLVVDV 92
K G +I V GS + GL+ GD I+EVN V+ N +H + V +K+ T + +V
Sbjct: 40 KPGIFISHVKPGSLSAEVGLEIGDQIVEVNGVDFSNLDHKEAVNVLKSSRSLT-ISIVAA 98
Query: 93 ASEEYFKSN 101
A E F ++
Sbjct: 99 AGRELFMTD 107
>pdb|2HE2|A Chain A, Crystal Structure Of The 3rd Pdz Domain Of Human Discs
Large Homologue 2, Dlg2
pdb|2HE2|B Chain B, Crystal Structure Of The 3rd Pdz Domain Of Human Discs
Large Homologue 2, Dlg2
Length = 102
Score = 40.4 bits (93), Expect = 0.001, Method: Composition-based stats.
Identities = 22/77 (28%), Positives = 40/77 (51%), Gaps = 2/77 (2%)
Query: 22 GYGFNLHGEKGKTGQYIGKVDEGSPAEAAG-LKEGDHIIEVNSVNICNENHNQVVQRIKA 80
G GFN+ G + G ++ + G PA+ +G L+ GD I+ VN +++ +H Q +K
Sbjct: 15 GLGFNIVGGEDGEGIFVSFILAGGPADLSGELQRGDQILSVNGIDLRGASHEQAAAALKG 74
Query: 81 VPDETKLLVVDVASEEY 97
+T ++ E+Y
Sbjct: 75 A-GQTVTIIAQYQPEDY 90
>pdb|3O5N|A Chain A, Tetrahydroquinoline Carboxylates Are Potent Inhibitors Of
The Shank Pdz Domain, A Putative Target In Autism
Disorders
pdb|3O5N|B Chain B, Tetrahydroquinoline Carboxylates Are Potent Inhibitors Of
The Shank Pdz Domain, A Putative Target In Autism
Disorders
pdb|3O5N|C Chain C, Tetrahydroquinoline Carboxylates Are Potent Inhibitors Of
The Shank Pdz Domain, A Putative Target In Autism
Disorders
pdb|3O5N|D Chain D, Tetrahydroquinoline Carboxylates Are Potent Inhibitors Of
The Shank Pdz Domain, A Putative Target In Autism
Disorders
pdb|3O5N|E Chain E, Tetrahydroquinoline Carboxylates Are Potent Inhibitors Of
The Shank Pdz Domain, A Putative Target In Autism
Disorders
pdb|3O5N|F Chain F, Tetrahydroquinoline Carboxylates Are Potent Inhibitors Of
The Shank Pdz Domain, A Putative Target In Autism
Disorders
pdb|3O5N|G Chain G, Tetrahydroquinoline Carboxylates Are Potent Inhibitors Of
The Shank Pdz Domain, A Putative Target In Autism
Disorders
pdb|3O5N|H Chain H, Tetrahydroquinoline Carboxylates Are Potent Inhibitors Of
The Shank Pdz Domain, A Putative Target In Autism
Disorders
Length = 112
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 45/92 (48%), Gaps = 13/92 (14%)
Query: 14 ILKWTDFDGYGFNLHGEKGKTG-------------QYIGKVDEGSPAEAAGLKEGDHIIE 60
IL+ D +G+GF L G K +T QY+ VD A AGL+ GD +IE
Sbjct: 15 ILQKRDHEGFGFVLRGAKAETPIEEFTPTPAFPALQYLESVDVEGVAWRAGLRTGDFLIE 74
Query: 61 VNSVNICNENHNQVVQRIKAVPDETKLLVVDV 92
VN VN+ H QVV I+ + + VV V
Sbjct: 75 VNGVNVVKVGHKQVVGLIRQGGNRLVMKVVSV 106
>pdb|2KBS|A Chain A, Solution Structure Of Harmonin Pdz2 In Complex With The
Carboxyl Tail Peptide Of Cadherin23
Length = 92
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Query: 33 KTGQYIGKVDEGSPAEAAGLKEGDHIIEVNSVNICNENHNQVVQRIKAVPDETKLLVVDV 92
K G +I V GS + GL+ GD I+EVN V+ N +H + V +K+ T + +V
Sbjct: 26 KPGIFISHVKPGSLSAEVGLEIGDQIVEVNGVDFSNLDHKEAVNVLKSSRSLT-ISIVAA 84
Query: 93 ASEEYF 98
A E F
Sbjct: 85 AGRELF 90
>pdb|2EGO|A Chain A, Crystal Structure Of Tamalin Pdz Domain
pdb|2EGO|B Chain B, Crystal Structure Of Tamalin Pdz Domain
pdb|2EGN|A Chain A, Crystal Structure Of Tamalin Pdz Domain In Complex With
Mglur5 C-Terminal Peptide
Length = 96
Score = 40.0 bits (92), Expect = 0.002, Method: Composition-based stats.
Identities = 19/44 (43%), Positives = 27/44 (61%)
Query: 37 YIGKVDEGSPAEAAGLKEGDHIIEVNSVNICNENHNQVVQRIKA 80
++ +V E SPA+ AGL GD I VN +N+ H ++V IKA
Sbjct: 40 FVARVHESSPAQLAGLTPGDTIASVNGLNVEGIRHREIVDIIKA 83
>pdb|2OMJ|A Chain A, Solution Structure Of Larg Pdz Domain
pdb|2OS6|A Chain A, Solution Structure Of Larg Pdz Domain In Complex With C-
Terminal Octa-Peptide Of Plexin B1
Length = 89
Score = 39.7 bits (91), Expect = 0.002, Method: Composition-based stats.
Identities = 24/73 (32%), Positives = 42/73 (57%), Gaps = 4/73 (5%)
Query: 8 VVRLCHILKWTDFDGYGFNLHGEKGKTGQYIGKVDEGSPAEAAGLKEGDHIIEVNSVNIC 67
+V+ C I++ D +G+G + G+ ++ V E A AG++ GD II+VN +
Sbjct: 6 LVQRCVIIQKDD-NGFGLTVSGD---NPVFVQSVKEDGAAMRAGVQTGDRIIKVNGTLVT 61
Query: 68 NENHNQVVQRIKA 80
+ NH +VV+ IK+
Sbjct: 62 HSNHLEVVKLIKS 74
>pdb|2EGK|A Chain A, Crystal Structure Of Tamalin Pdz-Intrinsic Ligand Fusion
Protein
pdb|2EGK|B Chain B, Crystal Structure Of Tamalin Pdz-Intrinsic Ligand Fusion
Protein
pdb|2EGK|C Chain C, Crystal Structure Of Tamalin Pdz-Intrinsic Ligand Fusion
Protein
pdb|2EGK|D Chain D, Crystal Structure Of Tamalin Pdz-Intrinsic Ligand Fusion
Protein
Length = 101
Score = 39.7 bits (91), Expect = 0.002, Method: Composition-based stats.
Identities = 19/44 (43%), Positives = 27/44 (61%)
Query: 37 YIGKVDEGSPAEAAGLKEGDHIIEVNSVNICNENHNQVVQRIKA 80
++ +V E SPA+ AGL GD I VN +N+ H ++V IKA
Sbjct: 40 FVARVHESSPAQLAGLTPGDTIASVNGLNVEGIRHREIVDIIKA 83
>pdb|3TSV|A Chain A, Crystal Structure Of The Third Pdz Domain Of The Human
Zo-1 Maguk Protein
Length = 124
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Query: 12 CHILKWTDFDGYGFNLHGEKGKTGQYIGKVDEGSPAEAAGLKEGDHIIEVNSVNICNENH 71
++K+ D G L G G ++ V E SPA GL+EGD I+ VN+V+ N
Sbjct: 30 MKLVKFRKGDSVGLRLAG-GNDVGIFVAGVLEDSPAAKEGLEEGDQILRVNNVDFTNIIR 88
Query: 72 NQVVQRIKAVP 82
+ V + +P
Sbjct: 89 EEAVLFLLDLP 99
>pdb|2YUY|A Chain A, Solution Structure Of Pdz Domain Of Rho Gtpase Activating
Protein 21
Length = 126
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 28/43 (65%)
Query: 37 YIGKVDEGSPAEAAGLKEGDHIIEVNSVNICNENHNQVVQRIK 79
++ +V EG PA AGL GD II+VN ++ + ++QV+ I+
Sbjct: 64 FVKQVKEGGPAFEAGLCTGDRIIKVNGESVIGKTYSQVIALIQ 106
>pdb|2PNT|A Chain A, Crystal Structure Of The Pdz Domain Of Human Grasp
(Grp1) In Complex With The C-Terminal Peptide Of The
Metabotropic Glutamate Receptor Type 1
pdb|2PNT|B Chain B, Crystal Structure Of The Pdz Domain Of Human Grasp
(Grp1) In Complex With The C-Terminal Peptide Of The
Metabotropic Glutamate Receptor Type 1
Length = 98
Score = 38.9 bits (89), Expect = 0.004, Method: Composition-based stats.
Identities = 19/44 (43%), Positives = 27/44 (61%)
Query: 37 YIGKVDEGSPAEAAGLKEGDHIIEVNSVNICNENHNQVVQRIKA 80
++ +V E SPA+ AGL GD I VN +N+ H ++V IKA
Sbjct: 40 FVCRVHESSPAQLAGLTPGDTIASVNGLNVEGIRHREIVDIIKA 83
>pdb|2I0I|A Chain A, X-Ray Crystal Structure Of Sap97 Pdz3 Bound To The C-
Terminal Peptide Of Hpv18 E6
pdb|2I0I|B Chain B, X-Ray Crystal Structure Of Sap97 Pdz3 Bound To The C-
Terminal Peptide Of Hpv18 E6
pdb|2I0I|C Chain C, X-Ray Crystal Structure Of Sap97 Pdz3 Bound To The C-
Terminal Peptide Of Hpv18 E6
Length = 85
Score = 38.9 bits (89), Expect = 0.004, Method: Composition-based stats.
Identities = 20/46 (43%), Positives = 30/46 (65%), Gaps = 1/46 (2%)
Query: 22 GYGFNLHGEKGKTGQYIGKVDEGSPAEAAG-LKEGDHIIEVNSVNI 66
G GFN+ G + G +I + G PA+ +G L++GD II VNSV++
Sbjct: 16 GLGFNIVGGEDGEGIFISFILAGGPADLSGELRKGDRIISVNSVDL 61
>pdb|1UJV|A Chain A, Solution Structure Of The Second Pdz Domain Of Human
Membrane Associated Guanylate Kinase Inverted-2
(Magi-2)
Length = 96
Score = 38.5 bits (88), Expect = 0.004, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 40/72 (55%), Gaps = 10/72 (13%)
Query: 22 GYGFNLHGEKGKTGQYIGKV--DEGSPAEAAGLKEGDHIIEVNSVNICNENHNQVVQRIK 79
G+GF + TGQ + ++ +G P GL EGD I+E+N N+ N +H +VV +K
Sbjct: 22 GFGFTI--ADSPTGQRVKQILDIQGCP----GLCEGDLIVEINQQNVQNLSHTEVVDILK 75
Query: 80 AVP--DETKLLV 89
P ET L++
Sbjct: 76 DCPIGSETSLII 87
>pdb|2F5Y|A Chain A, Crystal Structure Of The Pdz Domain From Human Rgs-3
pdb|2F5Y|B Chain B, Crystal Structure Of The Pdz Domain From Human Rgs-3
Length = 91
Score = 38.5 bits (88), Expect = 0.005, Method: Composition-based stats.
Identities = 22/69 (31%), Positives = 37/69 (53%), Gaps = 3/69 (4%)
Query: 21 DGYGFNLHGEKGKTGQYIGKVDEGSPAEAAGLKEGDHIIEVNSVNICNENHNQVVQRIKA 80
DG+GF + + Q VD G PAE AGL++ D ++++N + + ++ I++
Sbjct: 14 DGFGFTICCDSPVRVQ---AVDSGGPAERAGLQQLDTVLQLNERPVEHWKCVELAHEIRS 70
Query: 81 VPDETKLLV 89
P E LLV
Sbjct: 71 CPSEIILLV 79
>pdb|2EEH|A Chain A, Solution Structure Of First Pdz Domain Of Pdz Domain
Containing Protein 7
Length = 100
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 37/73 (50%), Gaps = 11/73 (15%)
Query: 4 DKTPVVRLCHILKWTDFDGYGFNLHGEKGKTGQYIGKVDEGSPAEAAGLKEGDHIIEVNS 63
+K+P RL F G + HG G ++ KV+EGS AE AGL GD I EVN
Sbjct: 17 EKSPAGRL-------GFSVRGGSEHG----LGIFVSKVEEGSSAERAGLCVGDKITEVNG 65
Query: 64 VNICNENHNQVVQ 76
+++ + V+
Sbjct: 66 LSLESTTMGSAVK 78
>pdb|3SHU|A Chain A, Crystal Structure Of Zo-1 Pdz3
pdb|3SHU|B Chain B, Crystal Structure Of Zo-1 Pdz3
Length = 95
Score = 38.1 bits (87), Expect = 0.006, Method: Composition-based stats.
Identities = 23/86 (26%), Positives = 43/86 (50%), Gaps = 1/86 (1%)
Query: 14 ILKWTDFDGYGFNLHGEKGKTGQYIGKVDEGSPAEAAGLKEGDHIIEVNSVNICNENHNQ 73
++K+ D G L G G ++ V E SPA GL+EGD I+ VN+V+ N +
Sbjct: 7 LVKFRKGDSVGLRLAG-GNDVGIFVAGVLEDSPAAKEGLEEGDQILRVNNVDFTNIIREE 65
Query: 74 VVQRIKAVPDETKLLVVDVASEEYFK 99
V + +P ++ ++ ++ ++
Sbjct: 66 AVLFLLDLPKGEEVTILAQKKKDVYR 91
>pdb|2DM8|A Chain A, Solution Structure Of The Eighth Pdz Domain Of Human
Inad- Like Protein
Length = 116
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 29/48 (60%)
Query: 42 DEGSPAEAAGLKEGDHIIEVNSVNICNENHNQVVQRIKAVPDETKLLV 89
+EG+ A L GD I+EVN V++ N +H + + ++ P + +L+V
Sbjct: 52 EEGAAARDGRLWAGDQILEVNGVDLRNSSHEEAITALRQTPQKVRLVV 99
>pdb|1PDR|A Chain A, Crystal Structure Of The Third Pdz Domain From The Human
Homolog Of Discs Large Protein
Length = 99
Score = 38.1 bits (87), Expect = 0.006, Method: Composition-based stats.
Identities = 20/46 (43%), Positives = 30/46 (65%), Gaps = 1/46 (2%)
Query: 22 GYGFNLHGEKGKTGQYIGKVDEGSPAEAAG-LKEGDHIIEVNSVNI 66
G GFN+ G + G +I + G PA+ +G L++GD II VNSV++
Sbjct: 19 GLGFNIVGGEDGEGIFISFILAGGPADLSGELRKGDRIISVNSVDL 64
>pdb|1WHD|A Chain A, Solution Structure Of The Pdz Domain Of Rgs3
Length = 100
Score = 38.1 bits (87), Expect = 0.007, Method: Composition-based stats.
Identities = 23/73 (31%), Positives = 39/73 (53%), Gaps = 3/73 (4%)
Query: 21 DGYGFNLHGEKGKTGQYIGKVDEGSPAEAAGLKEGDHIIEVNSVNICNENHNQVVQRIKA 80
DG+GF + + Q VD G PAE AGL++ D ++++N + + ++ I++
Sbjct: 26 DGFGFTICCDSPVRVQ---AVDSGGPAERAGLQQLDTVLQLNERPVEHWKCVELAHEIRS 82
Query: 81 VPDETKLLVVDVA 93
P E LLV V+
Sbjct: 83 CPSEIILLVWRVS 95
>pdb|2CS5|A Chain A, Solution Structure Of Pdz Domain Of Protein Tyrosine
Phosphatase, Non-Receptor Type 4
Length = 119
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 3/61 (4%)
Query: 23 YGFNLHG-EKGKTGQYIGKVDEGSPAE--AAGLKEGDHIIEVNSVNICNENHNQVVQRIK 79
+GFN+ G K + +V G+PA+ L EGD ++ +N +I H+QVV IK
Sbjct: 29 FGFNVKGGYDQKMPVIVSRVAPGTPADLCVPRLNEGDQVVLINGRDIAEHTHDQVVLFIK 88
Query: 80 A 80
A
Sbjct: 89 A 89
>pdb|3NFK|A Chain A, Crystal Structure Of The Ptpn4 Pdz Domain Complexed With
The C- Terminus Of A Rabies Virus G Protein
pdb|3NFK|B Chain B, Crystal Structure Of The Ptpn4 Pdz Domain Complexed With
The C- Terminus Of A Rabies Virus G Protein
pdb|3NFL|A Chain A, Crystal Structure Of The Ptpn4 Pdz Domain Complexed With
The C- Terminus Of The Glun2a Nmda Receptor Subunit
pdb|3NFL|B Chain B, Crystal Structure Of The Ptpn4 Pdz Domain Complexed With
The C- Terminus Of The Glun2a Nmda Receptor Subunit
pdb|3NFL|C Chain C, Crystal Structure Of The Ptpn4 Pdz Domain Complexed With
The C- Terminus Of The Glun2a Nmda Receptor Subunit
pdb|3NFL|D Chain D, Crystal Structure Of The Ptpn4 Pdz Domain Complexed With
The C- Terminus Of The Glun2a Nmda Receptor Subunit
Length = 107
Score = 37.4 bits (85), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 3/61 (4%)
Query: 23 YGFNLHGE-KGKTGQYIGKVDEGSPAE--AAGLKEGDHIIEVNSVNICNENHNQVVQRIK 79
+GFN+ G K + +V G+PA+ L EGD ++ +N +I H+QVV IK
Sbjct: 31 FGFNVKGGYDQKMPVIVSRVAPGTPADLCVPRLNEGDQVVLINGRDIAEHTHDQVVLFIK 90
Query: 80 A 80
A
Sbjct: 91 A 91
>pdb|2R4H|B Chain B, Crystal Structure Of A C1190s Mutant Of The 6th Pdz Domain
Of Human Membrane Associated Guanylate Kinase
pdb|2R4H|A Chain A, Crystal Structure Of A C1190s Mutant Of The 6th Pdz Domain
Of Human Membrane Associated Guanylate Kinase
pdb|2R4H|C Chain C, Crystal Structure Of A C1190s Mutant Of The 6th Pdz Domain
Of Human Membrane Associated Guanylate Kinase
Length = 112
Score = 37.4 bits (85), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 38/70 (54%), Gaps = 2/70 (2%)
Query: 22 GYGFNLHGEKG-KTGQYIGKVDEGSPAEAAG-LKEGDHIIEVNSVNICNENHNQVVQRIK 79
G+GF+L G + Y+ ++ E PAE +G ++ GD I+E+N N H++ ++ IK
Sbjct: 36 GFGFSLRGGREYNMDLYVLRLAEDGPAERSGKMRIGDEILEINGETTKNMKHSRAIELIK 95
Query: 80 AVPDETKLLV 89
+L +
Sbjct: 96 NGGRRVRLFL 105
>pdb|1L6O|A Chain A, Xenopus Dishevelled Pdz Domain
pdb|1L6O|B Chain B, Xenopus Dishevelled Pdz Domain
pdb|1L6O|C Chain C, Xenopus Dishevelled Pdz Domain
Length = 95
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 40/69 (57%), Gaps = 1/69 (1%)
Query: 30 EKGKTGQYIGKVDEGSPAEAAG-LKEGDHIIEVNSVNICNENHNQVVQRIKAVPDETKLL 88
E+G G YIG + +G A G ++ GD +++VN +N N +++ V+ ++ + + +
Sbjct: 25 ERGDGGIYIGSIXKGGAVAADGRIEPGDXLLQVNDINFENXSNDDAVRVLRDIVHKPGPI 84
Query: 89 VVDVASEEY 97
V+ VA E+
Sbjct: 85 VLTVAKLEH 93
>pdb|2FCF|A Chain A, The Crystal Structure Of The 7th Pdz Domain Of Mpdz
(Mupp-1)
Length = 103
Score = 37.0 bits (84), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
Query: 22 GYGFNLHGEKGKTGQYIGKVDEGSPAEAAG-LKEGDHIIEVNSVNICNENHNQVVQRIKA 80
G G L + G +I V E SPA G LK GD I+EV+ +++ + +H Q V+ I+
Sbjct: 27 GMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQAVEAIRK 86
Query: 81 VPDETKLLVVDVAS 94
+ +V + S
Sbjct: 87 AGNPVVFMVQSIIS 100
>pdb|2F0A|A Chain A, Crystal Structure Of Monomeric Uncomplexed Form Of
Xenopus Dishevelled Pdz Domain
pdb|2F0A|B Chain B, Crystal Structure Of Monomeric Uncomplexed Form Of
Xenopus Dishevelled Pdz Domain
pdb|2F0A|C Chain C, Crystal Structure Of Monomeric Uncomplexed Form Of
Xenopus Dishevelled Pdz Domain
pdb|2F0A|D Chain D, Crystal Structure Of Monomeric Uncomplexed Form Of
Xenopus Dishevelled Pdz Domain
Length = 98
Score = 37.0 bits (84), Expect = 0.013, Method: Composition-based stats.
Identities = 20/68 (29%), Positives = 39/68 (57%), Gaps = 1/68 (1%)
Query: 30 EKGKTGQYIGKVDEGSPAEAAG-LKEGDHIIEVNSVNICNENHNQVVQRIKAVPDETKLL 88
E+G G YIG + +G A G ++ GD +++VN +N N +++ V+ ++ + + +
Sbjct: 25 ERGDGGIYIGSIXKGGAVAADGRIEPGDXLLQVNDINFENXSNDDAVRVLRDIVHKPGPI 84
Query: 89 VVDVASEE 96
V+ VA E
Sbjct: 85 VLTVAKLE 92
>pdb|2IWQ|A Chain A, 7th Pdz Domain Of Multiple Pdz Domain Protein Mpdz
Length = 123
Score = 37.0 bits (84), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
Query: 22 GYGFNLHGEKGKTGQYIGKVDEGSPAEAAG-LKEGDHIIEVNSVNICNENHNQVVQRIKA 80
G G L + G +I V E SPA G LK GD I+EV+ +++ + +H Q V+ I+
Sbjct: 47 GMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQAVEAIRK 106
Query: 81 VPDETKLLVVDVAS 94
+ +V + S
Sbjct: 107 AGNPVVFMVQSIIS 120
>pdb|1UIT|A Chain A, Solution Structure Of Rsgi Ruh-006, The Third Pdz Domain
Of Hdlg5 (Kiaa0583) Protein [homo Sapiens]
Length = 117
Score = 37.0 bits (84), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Query: 29 GEKGKTGQYIGKVDEGSPAEAAGLKEGDHIIEVNSVNICNENHNQ 73
GEKG G Y+ KV GS A AGL+ GD ++E N +N+ + Q
Sbjct: 39 GEKG--GIYVSKVTVGSIAHQAGLEYGDQLLEFNGINLRSATEQQ 81
>pdb|3KHF|A Chain A, The Crystal Structure Of The Pdz Domain Of Human
Microtubule Associated SerineTHREONINE KINASE 3 (MAST3)
pdb|3KHF|B Chain B, The Crystal Structure Of The Pdz Domain Of Human
Microtubule Associated SerineTHREONINE KINASE 3 (MAST3)
Length = 99
Score = 37.0 bits (84), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 8/64 (12%)
Query: 23 YGFNLHGEKGKTG--------QYIGKVDEGSPAEAAGLKEGDHIIEVNSVNICNENHNQV 74
YGF+L + G + V++GSPA+ AGL+ GD I +N ++ H V
Sbjct: 15 YGFSLRAIRVYMGDSDVYTVHHVVWSVEDGSPAQEAGLRAGDLITHINGESVLGLVHMDV 74
Query: 75 VQRI 78
V+ +
Sbjct: 75 VELL 78
>pdb|3FY5|A Chain A, Dishevelled Pdz Domain Homodimer
pdb|3FY5|B Chain B, Dishevelled Pdz Domain Homodimer
Length = 91
Score = 37.0 bits (84), Expect = 0.014, Method: Composition-based stats.
Identities = 19/65 (29%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
Query: 30 EKGKTGQYIGKVDEGSPAEAAG-LKEGDHIIEVNSVNICNENHNQVVQRIKAVPDETKLL 88
E+G G YIG + +G A G ++ GD +++VN +N N +++ V+ ++ + + +
Sbjct: 23 ERGDGGIYIGSIXKGGAVAADGRIEPGDXLLQVNDINFENXSNDDAVRVLRDIVHKPGPI 82
Query: 89 VVDVA 93
V+ VA
Sbjct: 83 VLTVA 87
>pdb|2VPH|A Chain A, Crystal Structure Of The Human Protein Tyrosine
Phosphatase, Non-Receptor Type 4, Pdz Domain
pdb|2VPH|B Chain B, Crystal Structure Of The Human Protein Tyrosine
Phosphatase, Non-Receptor Type 4, Pdz Domain
Length = 100
Score = 37.0 bits (84), Expect = 0.015, Method: Composition-based stats.
Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 3/61 (4%)
Query: 23 YGFNLHG-EKGKTGQYIGKVDEGSPAE--AAGLKEGDHIIEVNSVNICNENHNQVVQRIK 79
+GFN+ G K + +V G+PA+ L EGD ++ +N +I H+QVV IK
Sbjct: 18 FGFNVKGGYDQKMPVIVSRVAPGTPADLCVPRLNEGDQVVLINGRDIAEHTHDQVVLFIK 77
Query: 80 A 80
A
Sbjct: 78 A 78
>pdb|2EHR|A Chain A, Solution Structure Of The Sixth Pdz Domain Of Human Inad-
Like Protein
Length = 117
Score = 37.0 bits (84), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 37/61 (60%), Gaps = 1/61 (1%)
Query: 35 GQYIGKVDEGSPA-EAAGLKEGDHIIEVNSVNICNENHNQVVQRIKAVPDETKLLVVDVA 93
G +I +V E SPA + LK GD I+EV+ V++ N +H++ V+ IK + +V ++
Sbjct: 51 GIFIKQVLEDSPAGKTNALKTGDKILEVSGVDLQNASHSEAVEAIKNAGNPVVFIVQSLS 110
Query: 94 S 94
S
Sbjct: 111 S 111
>pdb|3K1R|A Chain A, Structure Of Harmonin Npdz1 In Complex With The Sam-Pbm Of
Sans
Length = 192
Score = 36.2 bits (82), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 35/62 (56%), Gaps = 3/62 (4%)
Query: 21 DGYGFNLHG--EKGKTGQYIGKVDEGSPAEAAGLKEGDHIIEVNSVNICNENHNQVVQRI 78
+G G ++ G E G G +I + +G A++ GL+ GD I+ +N +I + H +V+ I
Sbjct: 96 EGLGLSVRGGLEFG-CGLFISHLIKGGQADSVGLQVGDEIVRINGYSISSCTHEEVINLI 154
Query: 79 KA 80
+
Sbjct: 155 RT 156
>pdb|1UM1|A Chain A, Solution Structure Of Rsgi Ruh-007, Pdz Domain In Human
Cdna
Length = 110
Score = 36.2 bits (82), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Query: 26 NLHGEKGKTGQYIGKVDEGSPAEAAG-LKEGDHIIEVNSVNICNENHNQVVQRIKAVPDE 84
+H G G YI + GSPA A G L GD I+EVN ++ + + V I+ +
Sbjct: 28 GMHTHLGAPGLYIQTLLPGSPAAADGRLSLGDRILEVNGSSLLGLGYLRAVDLIRHGGKK 87
Query: 85 TKLLV 89
+ LV
Sbjct: 88 MRFLV 92
>pdb|2JOA|A Chain A, Htra1 Bound To An Optimized Peptide: Nmr Assignment Of
Pdz Domain And Ligand Resonances
Length = 105
Score = 35.8 bits (81), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Query: 34 TGQYIGKVDEGSPAEAAGLKEGDHIIEVNSVNICNENH-NQVVQR 77
+G YI +V +PAEA GLKE D II +N ++ + N + V++R
Sbjct: 35 SGAYIIEVIPDTPAEAGGLKENDVIISINGQSVVSANDVSDVIKR 79
>pdb|3NZI|A Chain A, Substrate Induced Remodeling Of The Active Site Regulates
Htra1 Activity
Length = 334
Score = 35.8 bits (81), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Query: 34 TGQYIGKVDEGSPAEAAGLKEGDHIIEVNSVNICNENH-NQVVQR 77
+G YI +V +PAEA GLKE D II +N ++ + N + V++R
Sbjct: 254 SGAYIIEVIPDTPAEAGGLKENDVIISINGQSVVSANDVSDVIKR 298
>pdb|2YTW|A Chain A, Solution Structure Of The Pdz-Domain Of Human Protease
Htra 1 Precursor
Length = 118
Score = 35.8 bits (81), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Query: 34 TGQYIGKVDEGSPAEAAGLKEGDHIIEVNSVNICNENH-NQVVQR 77
+G YI +V +PAEA GLKE D II +N ++ + N + V++R
Sbjct: 48 SGAYIIEVIPDTPAEAGGLKENDVIISINGQSVVSANDVSDVIKR 92
>pdb|3NUM|A Chain A, Substrate Induced Remodeling Of The Active Site Regulates
Htra1 Activity
Length = 332
Score = 35.8 bits (81), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Query: 34 TGQYIGKVDEGSPAEAAGLKEGDHIIEVNSVNICNENH-NQVVQR 77
+G YI +V +PAEA GLKE D II +N ++ + N + V++R
Sbjct: 254 SGAYIIEVIPDTPAEAGGLKENDVIISINGQSVVSANDVSDVIKR 298
>pdb|1MC7|A Chain A, Solution Structure Of Mdvl1 Pdz Domain
Length = 95
Score = 35.4 bits (80), Expect = 0.039, Method: Composition-based stats.
Identities = 19/65 (29%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
Query: 30 EKGKTGQYIGKVDEGSPAEAAG-LKEGDHIIEVNSVNICNENHNQVVQRIKAVPDETKLL 88
++G G YIG + +G A G ++ GD +++VN VN N +++ V+ ++ + +T +
Sbjct: 22 DRGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDVNFENMSNDDAVRVLREIVSQTGPI 81
Query: 89 VVDVA 93
+ VA
Sbjct: 82 SLTVA 86
>pdb|3CBZ|A Chain A, The Dvl2 Pdz Domain In Complex With The N2 Inhibitory
Peptide
Length = 108
Score = 35.4 bits (80), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 41/79 (51%), Gaps = 1/79 (1%)
Query: 30 EKGKTGQYIGKVDEGSPAEAAG-LKEGDHIIEVNSVNICNENHNQVVQRIKAVPDETKLL 88
E+G G YIG + +G A G ++ GD +++VN +N N +++ V+ ++ + + +
Sbjct: 29 ERGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDMNFENMSNDDAVRVLRDIVHKPGPI 88
Query: 89 VVDVASEEYFKSNNITISS 107
V+ VA N + I
Sbjct: 89 VLTVAKSGGGSGNEVWIDG 107
>pdb|2KAW|A Chain A, Nmr Structure Of The Mdvl1 Pdz Domain In Complex With
Its Inhibitor
Length = 90
Score = 35.4 bits (80), Expect = 0.045, Method: Composition-based stats.
Identities = 19/65 (29%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
Query: 30 EKGKTGQYIGKVDEGSPAEAAG-LKEGDHIIEVNSVNICNENHNQVVQRIKAVPDETKLL 88
++G G YIG + +G A G ++ GD +++VN VN N +++ V+ ++ + +T +
Sbjct: 25 DRGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDVNFENMSNDDAVRVLREIVSQTGPI 84
Query: 89 VVDVA 93
+ VA
Sbjct: 85 SLTVA 89
>pdb|1WFV|A Chain A, Solution Structure Of The Fifth Pdz Domain Of Human
Membrane Associated Guanylate Kinase Inverted-2
(Kiaa0705 Protein)
Length = 103
Score = 35.0 bits (79), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 39/70 (55%), Gaps = 2/70 (2%)
Query: 22 GYGFNLHGEKG-KTGQYIGKVDEGSPAEAAG-LKEGDHIIEVNSVNICNENHNQVVQRIK 79
G+GF++ G + K Y+ ++ E PA G ++ GD IIE+N + + H + ++ IK
Sbjct: 23 GFGFSIRGGREYKMDLYVLRLAEDGPAIRNGRMRVGDQIIEINGESTRDMTHARAIELIK 82
Query: 80 AVPDETKLLV 89
+ +LL+
Sbjct: 83 SGGRRVRLLL 92
>pdb|2DLU|A Chain A, Solution Structure Of The Second Pdz Domain Of Human
Inad- Like Protein
Length = 111
Score = 35.0 bits (79), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
Query: 19 DFDGYGFNLHGEKGKTGQYIGKVDEGSPAEAAG-LKEGDHIIEVNSVNICNENHNQVVQR 77
D G GF + G K +G + + G A+ G L+ GDHI+++ N+ QV Q
Sbjct: 24 DGSGLGFGIVGGK-TSGVVVRTIVPGGLADRDGRLQTGDHILKIGGTNVQGMTSEQVAQV 82
Query: 78 IKAVPDETKLLV 89
++ + ++LV
Sbjct: 83 LRNCGNSVRMLV 94
>pdb|3CC0|A Chain A, The Dvl2 Pdz Domain In Complex With The N3 Inhibitory
Peptide
pdb|3CC0|B Chain B, The Dvl2 Pdz Domain In Complex With The N3 Inhibitory
Peptide
pdb|3CC0|C Chain C, The Dvl2 Pdz Domain In Complex With The N3 Inhibitory
Peptide
Length = 108
Score = 35.0 bits (79), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 43/82 (52%), Gaps = 3/82 (3%)
Query: 30 EKGKTGQYIGKVDEGSPAEAAG-LKEGDHIIEVNSVNICNENHNQVVQRIKAVPDETKLL 88
E+G G YIG + +G A G ++ GD +++VN +N N +++ V+ ++ + + +
Sbjct: 29 ERGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDMNFENMSNDDAVRVLRDIVHKPGPI 88
Query: 89 VVDVASEEYFKSNNITISSSLP 110
V+ VA I + S +P
Sbjct: 89 VLTVAKSG--GGGEIVLWSDIP 108
>pdb|2DAZ|A Chain A, Solution Structure Of The 7th Pdz Domain Of Inad-Like
Protein
Length = 124
Score = 35.0 bits (79), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 43/83 (51%), Gaps = 4/83 (4%)
Query: 12 CHILKW-TDFDGYGFNLHGEKGKTGQ--YIGKVDEGSPAEAAG-LKEGDHIIEVNSVNIC 67
HI++ D +G G +L G K ++ ++ ++ PA A G ++ GD ++E+N+ +
Sbjct: 26 LHIIELEKDKNGLGLSLAGNKDRSRMSIFVVGINPEGPAAADGRMRIGDELLEINNQILY 85
Query: 68 NENHNQVVQRIKAVPDETKLLVV 90
+H IK P + KL+ +
Sbjct: 86 GRSHQNASAIIKTAPSKVKLVFI 108
>pdb|2KQF|A Chain A, Solution Structure Of Mast205-Pdz Complexed With The
C-Terminus Of A Rabies Virus G Protein
pdb|2KYL|A Chain A, Solution Structure Of Mast2-Pdz Complexed With The
C-Terminus Of Pten
Length = 96
Score = 34.7 bits (78), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 8/64 (12%)
Query: 23 YGFNLHGEKGKTG--------QYIGKVDEGSPAEAAGLKEGDHIIEVNSVNICNENHNQV 74
YGF L + G + V++G PA AGL++GD I VN + H +V
Sbjct: 17 YGFTLRAIRVYMGDSDVYTVHHMVWHVEDGGPASEAGLRQGDLITHVNGEPVHGLVHTEV 76
Query: 75 VQRI 78
V+ I
Sbjct: 77 VELI 80
>pdb|3CBX|A Chain A, The Dvl2 Pdz Domain In Complex With The C1 Inhibitory
Peptide
pdb|3CBX|B Chain B, The Dvl2 Pdz Domain In Complex With The C1 Inhibitory
Peptide
Length = 105
Score = 34.7 bits (78), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
Query: 30 EKGKTGQYIGKVDEGSPAEAAG-LKEGDHIIEVNSVNICNENHNQVVQRIKAVPDETKLL 88
E+G G YIG + +G A G ++ GD +++VN +N N +++ V+ ++ + + +
Sbjct: 29 ERGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDMNFENMSNDDAVRVLRDIVHKPGPI 88
Query: 89 VVDVA 93
V+ VA
Sbjct: 89 VLTVA 93
>pdb|2RRM|A Chain A, Interplay Between Phosphatidyl-Inositol-Phosphates And
Claudins Upon Binding To The 1st Pdz Domain Of Zonula
Occludens 1
Length = 100
Score = 34.7 bits (78), Expect = 0.063, Method: Composition-based stats.
Identities = 24/77 (31%), Positives = 37/77 (48%), Gaps = 10/77 (12%)
Query: 22 GYGF---------NLHGEKGKTGQYIGKVDEGSPAEAAGLKEGDHIIEVNSVNICNENHN 72
G+GF N H + G+T I V +G PAE L+E D + VN V++ N H
Sbjct: 21 GFGFGIAISGGRDNPHFQSGETSIVISDVLKGGPAEGQ-LQENDRVAMVNGVSMDNVEHA 79
Query: 73 QVVQRIKAVPDETKLLV 89
VQ+++ K+ +
Sbjct: 80 FAVQQLRKSGKNAKITI 96
>pdb|2Z17|A Chain A, Crystal Sturcture Of Pdz Domain From Human Pleckstrin
Homology, Sec7
Length = 104
Score = 34.7 bits (78), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 25/43 (58%)
Query: 38 IGKVDEGSPAEAAGLKEGDHIIEVNSVNICNENHNQVVQRIKA 80
I K+ E SPA AGL+ GD + +N V+ + QVV I++
Sbjct: 52 ICKIQEDSPAHCAGLQAGDVLANINGVSTEGFTYKQVVDLIRS 94
>pdb|2REY|A Chain A, Crystal Structure Of The Pdz Domain Of Human Dishevelled
2 (Homologous To Drosophila Dsh)
Length = 100
Score = 34.7 bits (78), Expect = 0.067, Method: Composition-based stats.
Identities = 19/65 (29%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
Query: 30 EKGKTGQYIGKVDEGSPAEAAG-LKEGDHIIEVNSVNICNENHNQVVQRIKAVPDETKLL 88
E+G G YIG + +G A G ++ GD +++VN +N N +++ V+ ++ + + +
Sbjct: 29 ERGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDMNFENMSNDDAVRVLRDIVHKPGPI 88
Query: 89 VVDVA 93
V+ VA
Sbjct: 89 VLTVA 93
>pdb|2H3M|A Chain A, Crystal Structure Of Zo-1 Pdz1
Length = 97
Score = 34.7 bits (78), Expect = 0.071, Method: Composition-based stats.
Identities = 24/77 (31%), Positives = 37/77 (48%), Gaps = 10/77 (12%)
Query: 22 GYGF---------NLHGEKGKTGQYIGKVDEGSPAEAAGLKEGDHIIEVNSVNICNENHN 72
G+GF N H + G+T I V +G PAE L+E D + VN V++ N H
Sbjct: 18 GFGFGIAISGGRDNPHFQSGETSIVISDVLKGGPAEGQ-LQENDRVAMVNGVSMDNVEHA 76
Query: 73 QVVQRIKAVPDETKLLV 89
VQ+++ K+ +
Sbjct: 77 FAVQQLRKSGKNAKITI 93
>pdb|2H2C|A Chain A, Crystal Structure Of Zo-1 Pdz1 Bound To A Phage-Derived
Ligand (Wrrttwv)
Length = 107
Score = 34.3 bits (77), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 37/77 (48%), Gaps = 10/77 (12%)
Query: 22 GYGF---------NLHGEKGKTGQYIGKVDEGSPAEAAGLKEGDHIIEVNSVNICNENHN 72
G+GF N H + G+T I V +G PAE L+E D + VN V++ N H
Sbjct: 18 GFGFGIAISGGRDNPHFQSGETSIVISDVLKGGPAEGQ-LQENDRVAMVNGVSMDNVEHA 76
Query: 73 QVVQRIKAVPDETKLLV 89
VQ+++ K+ +
Sbjct: 77 FAVQQLRKSGKNAKITI 93
>pdb|2H2B|A Chain A, Crystal Structure Of Zo-1 Pdz1 Bound To A Phage-derived
Ligand (wrrttyl)
Length = 107
Score = 34.3 bits (77), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 37/77 (48%), Gaps = 10/77 (12%)
Query: 22 GYGF---------NLHGEKGKTGQYIGKVDEGSPAEAAGLKEGDHIIEVNSVNICNENHN 72
G+GF N H + G+T I V +G PAE L+E D + VN V++ N H
Sbjct: 18 GFGFGIAISGGRDNPHFQSGETSIVISDVLKGGPAEGQ-LQENDRVAMVNGVSMDNVEHA 76
Query: 73 QVVQRIKAVPDETKLLV 89
VQ+++ K+ +
Sbjct: 77 FAVQQLRKSGKNAKITI 93
>pdb|3CBY|A Chain A, The Dvl2 Pdz Domain In Complex With The N1 Inhibitory
Peptide
pdb|3CBY|B Chain B, The Dvl2 Pdz Domain In Complex With The N1 Inhibitory
Peptide
Length = 108
Score = 34.3 bits (77), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
Query: 30 EKGKTGQYIGKVDEGSPAEAAG-LKEGDHIIEVNSVNICNENHNQVVQRIKAVPDETKLL 88
E+G G YIG + +G A G ++ GD +++VN +N N +++ V+ ++ + + +
Sbjct: 29 ERGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDMNFENMSNDDAVRVLRDIVHKPGPI 88
Query: 89 VVDVA 93
V+ VA
Sbjct: 89 VLTVA 93
>pdb|1UHP|A Chain A, Solution Structure Of Rsgi Ruh-005, A Pdz Domain In
Human Cdna, Kiaa1095
Length = 107
Score = 33.9 bits (76), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 10/71 (14%)
Query: 19 DFDGYGFNLHGEK---------GKTGQYIGK-VDEGSPAEAAGLKEGDHIIEVNSVNICN 68
D GFN+ G + G ++ K VD G A+ GL+ D IIEVN ++
Sbjct: 17 DSGSLGFNIIGGRPSVDNHDGSSSEGIFVSKIVDSGPAAKEGGLQIHDRIIEVNGRDLSR 76
Query: 69 ENHNQVVQRIK 79
H+Q V+ K
Sbjct: 77 ATHDQAVEAFK 87
>pdb|2W7R|A Chain A, Structure Of The Pdz Domain Of Human Microtubule
Associated Serine-Threonine Kinase 4
pdb|2W7R|B Chain B, Structure Of The Pdz Domain Of Human Microtubule
Associated Serine-Threonine Kinase 4
Length = 98
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 8/64 (12%)
Query: 23 YGFNLHGEKGKTG--------QYIGKVDEGSPAEAAGLKEGDHIIEVNSVNICNENHNQV 74
YGF + + G + V+EGSPA AGLK GD I +N + H +V
Sbjct: 14 YGFTIRAIRVYVGDSDIYTVHHIVWNVEEGSPACQAGLKAGDLITHINGEPVHGLVHTEV 73
Query: 75 VQRI 78
++ +
Sbjct: 74 IELL 77
>pdb|2QBW|A Chain A, The Crystal Structure Of Pdz-Fibronectin Fusion Protein
Length = 195
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 34/76 (44%), Gaps = 10/76 (13%)
Query: 24 GFNLHGEKGKTGQ---------YIGKVDEGSPAEAAGLKEGDHIIEVNSVNICNENHNQV 74
GF++ G G G ++ +V PA L+ GD II+ N + N H Q
Sbjct: 5 GFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPASKL-LQPGDKIIQANGYSFINIEHGQA 63
Query: 75 VQRIKAVPDETKLLVV 90
V +K + +L++V
Sbjct: 64 VSLLKTFQNTVELIIV 79
>pdb|2D8I|A Chain A, Solution Structure Of The Pdz Domain Of T-Cell Lymphoma
Invasion And Metastasis 1 Varian
Length = 114
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
Query: 8 VVRLCHILKW-TDFDGYGFNLHG--EKGKTGQYIGKVDEGSPAEAAGLKEGDHIIEVN 62
V + HI K T D YGF+L E G Y+ V E A GLK GD I+E+N
Sbjct: 15 VTQSIHIEKSDTAADTYGFSLSSVEEDGIRRLYVNSVKETGLASKKGLKAGDEILEIN 72
>pdb|3CH8|A Chain A, The Crystal Structure Of Pdz-Fibronectin Fusion Protein
Length = 195
Score = 33.5 bits (75), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 34/76 (44%), Gaps = 10/76 (13%)
Query: 24 GFNLHGEKGKTGQ---------YIGKVDEGSPAEAAGLKEGDHIIEVNSVNICNENHNQV 74
GF++ G G G ++ +V PA L+ GD II+ N + N H Q
Sbjct: 6 GFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPASKL-LQPGDKIIQANGYSFINIEHGQA 64
Query: 75 VQRIKAVPDETKLLVV 90
V +K + +L++V
Sbjct: 65 VSLLKTFQNTVELIIV 80
>pdb|3KZD|A Chain A, Crystal Structure Of Free T-Cell Lymphoma Invasion And
Metas Pdz Domain
pdb|3KZE|A Chain A, Crystal Structure Of T-Cell Lymphoma Invasion And
Metastasis Complex With Ssrkeyya Peptide
pdb|3KZE|B Chain B, Crystal Structure Of T-Cell Lymphoma Invasion And
Metastasis Complex With Ssrkeyya Peptide
pdb|3KZE|C Chain C, Crystal Structure Of T-Cell Lymphoma Invasion And
Metastasis Complex With Ssrkeyya Peptide
Length = 94
Score = 33.5 bits (75), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Query: 18 TDFDGYGFNLHG--EKGKTGQYIGKVDEGSPAEAAGLKEGDHIIEVN 62
T D YGF+L E G Y+ V E A GLK GD I+E+N
Sbjct: 17 TAADTYGFSLSSVEEDGIRRLYVNSVKETGLASKKGLKAGDEILEIN 63
>pdb|3PV4|A Chain A, Structure Of Legionella Fallonii Degq (Delta-Pdz2 Variant)
Length = 354
Score = 33.5 bits (75), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 27/55 (49%)
Query: 35 GQYIGKVDEGSPAEAAGLKEGDHIIEVNSVNICNENHNQVVQRIKAVPDETKLLV 89
G + +V+ SPAE AGLK GD I ++N I + + V K++V
Sbjct: 283 GALVSQVNPNSPAELAGLKAGDIITQINDTKITQATQVKTTISLLRVGSTVKIIV 337
>pdb|3PV2|A Chain A, Structure Of Legionella Fallonii Degq (Wt)
pdb|3PV2|B Chain B, Structure Of Legionella Fallonii Degq (Wt)
pdb|3PV2|C Chain C, Structure Of Legionella Fallonii Degq (Wt)
pdb|3PV2|D Chain D, Structure Of Legionella Fallonii Degq (Wt)
Length = 451
Score = 33.5 bits (75), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 27/55 (49%)
Query: 35 GQYIGKVDEGSPAEAAGLKEGDHIIEVNSVNICNENHNQVVQRIKAVPDETKLLV 89
G + +V+ SPAE AGLK GD I ++N I + + V K++V
Sbjct: 283 GALVSQVNPNSPAELAGLKAGDIITQINDTKITQATQVKTTISLLRVGSTVKIIV 337
>pdb|3PV3|A Chain A, Structure Of Legionella Fallonii Degq (S193a Variant)
pdb|3PV3|B Chain B, Structure Of Legionella Fallonii Degq (S193a Variant)
pdb|3PV3|C Chain C, Structure Of Legionella Fallonii Degq (S193a Variant)
pdb|3PV3|D Chain D, Structure Of Legionella Fallonii Degq (S193a Variant)
Length = 451
Score = 33.5 bits (75), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 27/55 (49%)
Query: 35 GQYIGKVDEGSPAEAAGLKEGDHIIEVNSVNICNENHNQVVQRIKAVPDETKLLV 89
G + +V+ SPAE AGLK GD I ++N I + + V K++V
Sbjct: 283 GALVSQVNPNSPAELAGLKAGDIITQINDTKITQATQVKTTISLLRVGSTVKIIV 337
>pdb|3PV5|A Chain A, Structure Of Legionella Fallonii Degq (N189gP190G VARIANT)
pdb|3PV5|B Chain B, Structure Of Legionella Fallonii Degq (N189gP190G VARIANT)
pdb|3PV5|C Chain C, Structure Of Legionella Fallonii Degq (N189gP190G VARIANT)
pdb|3PV5|D Chain D, Structure Of Legionella Fallonii Degq (N189gP190G VARIANT)
Length = 451
Score = 33.5 bits (75), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 27/55 (49%)
Query: 35 GQYIGKVDEGSPAEAAGLKEGDHIIEVNSVNICNENHNQVVQRIKAVPDETKLLV 89
G + +V+ SPAE AGLK GD I ++N I + + V K++V
Sbjct: 283 GALVSQVNPNSPAELAGLKAGDIITQINDTKITQATQVKTTISLLRVGSTVKIIV 337
>pdb|2FE5|A Chain A, The Crystal Structure Of The Second Pdz Domain Of Human
Dlg3
Length = 94
Score = 33.5 bits (75), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 36/75 (48%), Gaps = 7/75 (9%)
Query: 22 GYGFNLHGE------KGKTGQYIGKVDEGSPAEAAG-LKEGDHIIEVNSVNICNENHNQV 74
G GF++ G G YI K+ EG A+ G L+ GD ++ VN+ N+ + H +
Sbjct: 15 GLGFSIAGGIGNQHIPGDNSIYITKIIEGGAAQKDGRLQIGDRLLAVNNTNLQDVRHEEA 74
Query: 75 VQRIKAVPDETKLLV 89
V +K D L V
Sbjct: 75 VASLKNTSDMVYLKV 89
>pdb|3PS4|A Chain A, Pdz Domain From Human Microtubule-Associated
SerineTHREONINE-Protein Kinase 1
pdb|3PS4|B Chain B, Pdz Domain From Human Microtubule-Associated
SerineTHREONINE-Protein Kinase 1
pdb|3PS4|C Chain C, Pdz Domain From Human Microtubule-Associated
SerineTHREONINE-Protein Kinase 1
pdb|3PS4|D Chain D, Pdz Domain From Human Microtubule-Associated
SerineTHREONINE-Protein Kinase 1
Length = 102
Score = 33.5 bits (75), Expect = 0.17, Method: Composition-based stats.
Identities = 24/64 (37%), Positives = 31/64 (48%), Gaps = 8/64 (12%)
Query: 23 YGFNLHGEK---GKTGQY-----IGKVDEGSPAEAAGLKEGDHIIEVNSVNICNENHNQV 74
YGF L + G T Y + V+EG PA+ AGL GD I VN + H +V
Sbjct: 18 YGFTLRAIRVYMGDTDVYSVHHIVWHVEEGGPAQEAGLCAGDLITHVNGEPVHGMVHPEV 77
Query: 75 VQRI 78
V+ I
Sbjct: 78 VELI 81
>pdb|2KOJ|A Chain A, Solution Structure Of Mouse Par-3 Pdz2 (Residues 450-558)
Length = 111
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 30/55 (54%)
Query: 44 GSPAEAAGLKEGDHIIEVNSVNICNENHNQVVQRIKAVPDETKLLVVDVASEEYF 98
G+ + LK GD +IEVN V++ ++ +VV +++ E + ++ EE F
Sbjct: 50 GAAIQDGRLKAGDRLIEVNGVDLAGKSQEEVVSLLRSTKMEGTVSLLVFRQEEAF 104
>pdb|2Q9V|A Chain A, Crystal Structure Of The C890s Mutant Of The 4th Pdz
Domain Of Human Membrane Associated Guanylate Kinase
Length = 90
Score = 32.7 bits (73), Expect = 0.28, Method: Composition-based stats.
Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 4/69 (5%)
Query: 14 ILKWTDFDGYGFNLHG--EKGKTGQYIGKVDEGSPAEAAG-LKEGDHIIEVNSVNICNEN 70
I W G+GF + G E G+ YIG + A+ G L+ GD +I V+ + ++
Sbjct: 6 IFLWRKETGFGFRILGGNEPGEP-IYIGHIVPLGAADTDGRLRSGDELISVDGTPVIGKS 64
Query: 71 HNQVVQRIK 79
H VVQ ++
Sbjct: 65 HQLVVQLMQ 73
>pdb|2P3W|A Chain A, Crystal Structure Of The Htra3 Pdz Domain Bound To A
Phage-Derived Ligand (Fgrwv)
pdb|2P3W|B Chain B, Crystal Structure Of The Htra3 Pdz Domain Bound To A
Phage-Derived Ligand (Fgrwv)
Length = 112
Score = 32.3 bits (72), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 43/80 (53%), Gaps = 11/80 (13%)
Query: 34 TGQYIGKVDEGSPAEAAGLKEGDHIIEVNSVNICNENHNQVVQRIKAVPDETKLLVVDVA 93
+G Y+ +V SP++ G+++GD I++VN + + + Q +AV E+ LL+
Sbjct: 35 SGIYVQEVAPNSPSQRGGIQDGDIIVKVNGRPLVDSSELQ-----EAVLTESPLLL---- 85
Query: 94 SEEYFKSNNITISSSLPDIV 113
E + N+ + S P++V
Sbjct: 86 --EVRRGNDDLLFSIAPEVV 103
>pdb|2OPG|A Chain A, The Crystal Structure Of The 10th Pdz Domain Of Mpdz
pdb|2OPG|B Chain B, The Crystal Structure Of The 10th Pdz Domain Of Mpdz
Length = 98
Score = 32.3 bits (72), Expect = 0.35, Method: Composition-based stats.
Identities = 12/46 (26%), Positives = 25/46 (54%)
Query: 42 DEGSPAEAAGLKEGDHIIEVNSVNICNENHNQVVQRIKAVPDETKL 87
+EG+ + L GD I+EVN +++ H++ + ++ P +L
Sbjct: 39 EEGAACKDGRLWAGDQILEVNGIDLRKATHDEAINVLRQTPQRVRL 84
>pdb|2H3L|A Chain A, Crystal Structure Of Erbin Pdz
pdb|2H3L|B Chain B, Crystal Structure Of Erbin Pdz
pdb|1N7T|A Chain A, Erbin Pdz Domain Bound To A Phage-Derived Peptide
Length = 103
Score = 32.3 bits (72), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 34/76 (44%), Gaps = 10/76 (13%)
Query: 24 GFNLHGEKGKTGQ---------YIGKVDEGSPAEAAGLKEGDHIIEVNSVNICNENHNQV 74
GF++ G G G ++ +V PA L+ GD II+ N + N H Q
Sbjct: 24 GFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPASKL-LQPGDKIIQANGYSFINIEHGQA 82
Query: 75 VQRIKAVPDETKLLVV 90
V +K + +L++V
Sbjct: 83 VSLLKTFQNTVELIIV 98
>pdb|1UEQ|A Chain A, Solution Structure Of The First Pdz Domain Of Human
Atrophin-1 Interacting Protein 1 (Kiaa0705 Protein)
Length = 123
Score = 32.3 bits (72), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Query: 22 GYGFNLHG--EKGKTGQYIGKVDEGSPAEAAGLKEGDHIIEVNSVNICNENHNQVVQRIK 79
G+GF + G E + Q + +G A+ ++ GD I+ +N V + H VV+ +
Sbjct: 31 GFGFTIIGGDEPDEFLQVKSVIPDGPAAQDGKMETGDVIVYINEVCVLGHTHADVVKLFQ 90
Query: 80 AVP 82
+VP
Sbjct: 91 SVP 93
>pdb|2KPK|A Chain A, Magi-1 Pdz1
pdb|2KPL|A Chain A, Magi-1 Pdz1 E6CT
Length = 129
Score = 32.3 bits (72), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Query: 22 GYGFNLHG--EKGKTGQYIGKVDEGSPAEAAGLKEGDHIIEVNSVNICNENHNQVVQRIK 79
G+GF + G E + Q V +G A ++ GD I+ VN + H QVV+ +
Sbjct: 30 GFGFTVVGGDEPDEFLQIKSLVLDGPAALDGKMETGDVIVSVNDTCVLGHTHAQVVKIFQ 89
Query: 80 AVP 82
++P
Sbjct: 90 SIP 92
>pdb|1MFG|A Chain A, The Structure Of Erbin Pdz Domain Bound To The Carboxy-
Terminal Tail Of The Erbb2 Receptor
pdb|1MFL|A Chain A, The Structure Of Erbin Pdz Domain Bound To The Carboxy-
Terminal Tail Of The Erbb2 Receptor
Length = 95
Score = 32.0 bits (71), Expect = 0.48, Method: Composition-based stats.
Identities = 21/76 (27%), Positives = 34/76 (44%), Gaps = 10/76 (13%)
Query: 24 GFNLHGEKGKTGQ---------YIGKVDEGSPAEAAGLKEGDHIIEVNSVNICNENHNQV 74
GF++ G G G ++ +V PA L+ GD II+ N + N H Q
Sbjct: 16 GFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPASKL-LQPGDKIIQANGYSFINIEHGQA 74
Query: 75 VQRIKAVPDETKLLVV 90
V +K + +L++V
Sbjct: 75 VSLLKTFQNTVELIIV 90
>pdb|3GSL|A Chain A, Crystal Structure Of Psd-95 Tandem Pdz Domains 1 And 2
pdb|3GSL|B Chain B, Crystal Structure Of Psd-95 Tandem Pdz Domains 1 And 2
Length = 196
Score = 31.6 bits (70), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 39/92 (42%), Gaps = 7/92 (7%)
Query: 5 KTPVVRLCHILKWTDFDGYGFNLHGE------KGKTGQYIGKVDEGSPAEAAG-LKEGDH 57
K P ++ I G GF++ G G Y+ K+ EG A G L+ GD
Sbjct: 95 KPPAEKVMEIKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDK 154
Query: 58 IIEVNSVNICNENHNQVVQRIKAVPDETKLLV 89
I+ VNSV + + H V +K D L V
Sbjct: 155 ILAVNSVGLEDVMHEDAVAALKNTYDVVYLKV 186
>pdb|2KA9|A Chain A, Solution Structure Of Psd-95 Pdz12 Complexed With Cypin
Peptide
Length = 189
Score = 31.6 bits (70), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 39/92 (42%), Gaps = 7/92 (7%)
Query: 5 KTPVVRLCHILKWTDFDGYGFNLHGE------KGKTGQYIGKVDEGSPAEAAG-LKEGDH 57
K P ++ I G GF++ G G Y+ K+ EG A G L+ GD
Sbjct: 92 KPPAEKVMEIKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDK 151
Query: 58 IIEVNSVNICNENHNQVVQRIKAVPDETKLLV 89
I+ VNSV + + H V +K D L V
Sbjct: 152 ILAVNSVGLEDVMHEDAVAALKNTYDVVYLKV 183
>pdb|2AWX|A Chain A, Synapse Associated Protein 97 Pdz2 Domain Variant C378s
pdb|2AWX|B Chain B, Synapse Associated Protein 97 Pdz2 Domain Variant C378s
Length = 105
Score = 31.2 bits (69), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 35/75 (46%), Gaps = 7/75 (9%)
Query: 22 GYGFNLHGE------KGKTGQYIGKVDEGSPAEAAG-LKEGDHIIEVNSVNICNENHNQV 74
G GF++ G G Y+ K+ EG A G L+ GD ++ VNSV++ H +
Sbjct: 15 GLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNSVSLEEVTHEEA 74
Query: 75 VQRIKAVPDETKLLV 89
V +K D L V
Sbjct: 75 VTALKNTSDFVYLKV 89
>pdb|3ZRT|A Chain A, Crystal Structure Of Human Psd-95 Pdz1-2
pdb|3ZRT|B Chain B, Crystal Structure Of Human Psd-95 Pdz1-2
pdb|3ZRT|C Chain C, Crystal Structure Of Human Psd-95 Pdz1-2
pdb|3ZRT|D Chain D, Crystal Structure Of Human Psd-95 Pdz1-2
Length = 199
Score = 31.2 bits (69), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 39/92 (42%), Gaps = 7/92 (7%)
Query: 5 KTPVVRLCHILKWTDFDGYGFNLHGE------KGKTGQYIGKVDEGSPAEAAG-LKEGDH 57
K P ++ I G GF++ G G Y+ K+ EG A G L+ GD
Sbjct: 102 KPPAEKVMEIKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDK 161
Query: 58 IIEVNSVNICNENHNQVVQRIKAVPDETKLLV 89
I+ VNSV + + H V +K D L V
Sbjct: 162 ILAVNSVGLEDVMHEDAVAALKNTYDVVYLKV 193
>pdb|2AWU|A Chain A, Synapse Associated Protein 97 Pdz2 Domain Variant C378g
pdb|2AWU|B Chain B, Synapse Associated Protein 97 Pdz2 Domain Variant C378g
Length = 105
Score = 30.8 bits (68), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 34/75 (45%), Gaps = 7/75 (9%)
Query: 22 GYGFNLHGE------KGKTGQYIGKVDEGSPAEAAG-LKEGDHIIEVNSVNICNENHNQV 74
G GF++ G G Y+ K+ EG A G L+ GD ++ VNSV + H +
Sbjct: 15 GLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNSVGLEEVTHEEA 74
Query: 75 VQRIKAVPDETKLLV 89
V +K D L V
Sbjct: 75 VTALKNTSDFVYLKV 89
>pdb|2I04|A Chain A, X-Ray Crystal Structure Of Magi-1 Pdz1 Bound To The C-
Terminal Peptide Of Hpv18 E6
pdb|2I04|B Chain B, X-Ray Crystal Structure Of Magi-1 Pdz1 Bound To The C-
Terminal Peptide Of Hpv18 E6
Length = 85
Score = 30.8 bits (68), Expect = 0.91, Method: Composition-based stats.
Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Query: 22 GYGFNLHG--EKGKTGQYIGKVDEGSPAEAAGLKEGDHIIEVNSVNICNENHNQVVQRIK 79
G+GF + G E + Q V +G A ++ GD I+ VN + H QVV+ +
Sbjct: 12 GFGFTVVGGDEPDEFLQIKSLVLDGPAALDGKMETGDVIVSVNDTCVLGHTHAQVVKIFQ 71
Query: 80 AVP 82
++P
Sbjct: 72 SIP 74
>pdb|2DJT|A Chain A, Solution Structures Of The Pdz Domain Of Human Unnamed
Protein Product
Length = 104
Score = 30.8 bits (68), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 37/74 (50%), Gaps = 4/74 (5%)
Query: 20 FDGYGFNLHGEK---GKTGQYIGKVDEGSPAEAAG-LKEGDHIIEVNSVNICNENHNQVV 75
+ G+G L G + G T + + + PA+ G L+ GD ++ +N + H Q V
Sbjct: 21 YAGFGLTLGGGRDVAGDTPLAVRGLLKDGPAQRCGRLEVGDLVLHINGESTQGLTHAQAV 80
Query: 76 QRIKAVPDETKLLV 89
+RI+A + L++
Sbjct: 81 ERIRAGGPQLHLVI 94
>pdb|2KOM|A Chain A, Solution Structure Of Humar Par-3b Pdz2 (Residues 451-549)
Length = 121
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 24/41 (58%)
Query: 44 GSPAEAAGLKEGDHIIEVNSVNICNENHNQVVQRIKAVPDE 84
G+ + LK GD +IEVN V++ ++ +VV +++ E
Sbjct: 69 GAAIQDGRLKAGDRLIEVNGVDLVGKSQEEVVSLLRSTKME 109
>pdb|3SOE|A Chain A, Crystal Structure Of The 3rd Pdz Domain Of The Human
Membrane- Associated Guanylate Kinase, Ww And Pdz
Domain-Containing Protein 3 (Magi3)
Length = 113
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 4/61 (6%)
Query: 22 GYGFNLHGEKGKTGQYIGKVDEGSPAEAAGLKEGDHIIEVNSVNICNENHNQVVQRIKAV 81
G+GF + TGQ + + + + GL++GD I E+ N+ N H QVV+ +K
Sbjct: 24 GFGFAI--ADSPTGQKVKMILDSQWCQ--GLQKGDIIKEIYHQNVQNLTHLQVVEVLKQF 79
Query: 82 P 82
P
Sbjct: 80 P 80
>pdb|1VB7|A Chain A, Solution Structure Of The Pdz Domain Of Pdz And Lim
Domain 2
Length = 94
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 23 YGFNLHGEKG-KTGQYIGKVDEGSPAEAAGLKEGDHIIEVNSVNICNENHNQVVQRIK 79
+GF + G + T + KV E AEAA L+ GD I+ +N + N H + +I+
Sbjct: 18 WGFRISGGRDFHTPIIVTKVTERGKAEAADLRPGDIIVAINGQSAENMLHAEAQSKIR 75
>pdb|2G2L|A Chain A, Crystal Structure Of The Second Pdz Domain Of Sap97 In
Complex With A Glur-A C-Terminal Peptide
pdb|2G2L|B Chain B, Crystal Structure Of The Second Pdz Domain Of Sap97 In
Complex With A Glur-A C-Terminal Peptide
Length = 105
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 34/75 (45%), Gaps = 7/75 (9%)
Query: 22 GYGFNLHGE------KGKTGQYIGKVDEGSPAEAAG-LKEGDHIIEVNSVNICNENHNQV 74
G GF++ G G Y+ K+ EG A G L+ GD ++ VNSV + H +
Sbjct: 15 GLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNSVCLEEVTHEEA 74
Query: 75 VQRIKAVPDETKLLV 89
V +K D L V
Sbjct: 75 VTALKNTSDFVYLKV 89
>pdb|1QLC|A Chain A, Solution Structure Of The Second Pdz Domain Of
Postsynaptic Density-95
Length = 95
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 34/75 (45%), Gaps = 7/75 (9%)
Query: 22 GYGFNLHGE------KGKTGQYIGKVDEGSPAEAAG-LKEGDHIIEVNSVNICNENHNQV 74
G GF++ G G Y+ K+ EG A G L+ GD I+ VNSV + + H
Sbjct: 15 GLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVGLEDVMHEDA 74
Query: 75 VQRIKAVPDETKLLV 89
V +K D L V
Sbjct: 75 VAALKNTYDVVYLKV 89
>pdb|2VSV|A Chain A, Crystal Structure Of The Pdz Domain Of Human Rhophilin-2
pdb|2VSV|B Chain B, Crystal Structure Of The Pdz Domain Of Human Rhophilin-2
Length = 109
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 37/76 (48%), Gaps = 4/76 (5%)
Query: 24 GFNLHGEKGKTGQYIGKVDEGSPAEAAGLKEGDHIIEVNSVNICNENHNQVVQRIKAV-P 82
GF L G ++ D A AG +EGD+I+ + V+ ++V++ +K+
Sbjct: 37 GFTLRGNAPVQVHFL---DPYCSASVAGAREGDYIVSIQLVDCKWLTLSEVMKLLKSFGE 93
Query: 83 DETKLLVVDVASEEYF 98
DE ++ VV + E F
Sbjct: 94 DEIEMKVVSLLDEVTF 109
>pdb|2OGP|A Chain A, Solution Structure Of The Second Pdz Domain Of Par-3
Length = 97
Score = 29.6 bits (65), Expect = 2.0, Method: Composition-based stats.
Identities = 15/53 (28%), Positives = 29/53 (54%)
Query: 44 GSPAEAAGLKEGDHIIEVNSVNICNENHNQVVQRIKAVPDETKLLVVDVASEE 96
G+ + LK GD +IEVN V++ ++ +VV +++ E + ++ EE
Sbjct: 44 GAAIQDGRLKAGDRLIEVNGVDLAGKSQEEVVSLLRSTKMEGTVSLLVFRQEE 96
>pdb|1WJL|A Chain A, Solution Structure Of Pdz Domain Of Mouse Cypher Protein
Length = 90
Score = 29.6 bits (65), Expect = 2.1, Method: Composition-based stats.
Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Query: 23 YGFNLHGEKG-KTGQYIGKVDEGSPAEAAGLKEGDHIIEVNSVNICNENHNQVVQRIKA 80
+GF L G K I ++ GS A + L +GD ++ ++ VN H + +IK+
Sbjct: 20 WGFRLQGGKDFNMPLTISRITPGSKAAQSQLSQGDLVVAIDGVNTDTMTHLEAQNKIKS 78
>pdb|1RGW|A Chain A, Solution Structure Of Zasp's Pdz Domain
Length = 85
Score = 29.6 bits (65), Expect = 2.2, Method: Composition-based stats.
Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Query: 23 YGFNLHGEKG-KTGQYIGKVDEGSPAEAAGLKEGDHIIEVNSVNICNENHNQVVQRIKA 80
+GF L G K I ++ GS A + L +GD ++ ++ VN H + +IK+
Sbjct: 13 WGFRLQGGKDFNMPLTISRITPGSKAAQSQLSQGDLVVAIDGVNTDTMTHLEAQNKIKS 71
>pdb|2CSJ|A Chain A, Solution Structure Of N-Terminal Pdz Domain From Mouse
Tjp2
Length = 117
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 26 NLHGEKGKTGQYIGKVDEGSPAEAAGLKEGDHIIEVNSVNICNENHNQVVQRIK 79
N H E G+T I V G PA+ L+E D ++ VN + + H+ VQ+++
Sbjct: 38 NPHFENGETSIVISDVLPGGPADGL-LQENDRVVMVNGTPMEDVLHSFAVQQLR 90
>pdb|2QT5|A Chain A, Crystal Structure Of Grip1 Pdz12 In Complex With The Fras1
Peptide
pdb|2QT5|B Chain B, Crystal Structure Of Grip1 Pdz12 In Complex With The Fras1
Peptide
Length = 200
Score = 29.3 bits (64), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 41 VDEGSPAEAAG-LKEGDHIIEVNSVNICNENHNQVVQRIKAVPDETKLLV 89
V G PA+ G +K GD ++ V+ + + H + + +K E LL+
Sbjct: 142 VRPGGPADREGTIKPGDRLLSVDGIRLLGTTHAEAMSILKQCGQEATLLI 191
>pdb|1VA8|A Chain A, Solution Structure Of The Pdz Domain Of Pals1 Protein
Length = 113
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Query: 38 IGKVDEGSPAEAAGL-KEGDHIIEVNSVNICNENHNQV 74
I ++ +G AE +GL EGD ++E+N + I ++ N+V
Sbjct: 52 ISRIVKGGAAEKSGLLHEGDEVLEINGIEIRGKDVNEV 89
>pdb|2PZD|A Chain A, Crystal Structure Of The Htra2OMI PDZ DOMAIN BOUND TO A
PHAGE-Derived Ligand (Wtmfwv)
pdb|2PZD|B Chain B, Crystal Structure Of The Htra2OMI PDZ DOMAIN BOUND TO A
PHAGE-Derived Ligand (Wtmfwv)
Length = 113
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 19/34 (55%)
Query: 35 GQYIGKVDEGSPAEAAGLKEGDHIIEVNSVNICN 68
G I KV GSPA AGL+ GD I+ + + N
Sbjct: 36 GVLIHKVILGSPAHRAGLRPGDVILAIGEQMVQN 69
>pdb|4AMH|A Chain A, Influence Of Circular Permutation On The Folding Pathway
Of A Pdz Domain
pdb|4AMH|B Chain B, Influence Of Circular Permutation On The Folding Pathway
Of A Pdz Domain
Length = 106
Score = 28.9 bits (63), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 36/82 (43%), Gaps = 7/82 (8%)
Query: 22 GYGFNLHGE------KGKTGQYIGKVDEGSPAEAAG-LKEGDHIIEVNSVNICNENHNQV 74
G GF++ G G Y+ K+ EG A G L+ GD ++ VN+V + H +
Sbjct: 14 GLGFSIAGGVGNQHWPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNNVALEEVTHEEA 73
Query: 75 VQRIKAVPDETKLLVVDVASEE 96
V +K D L V S E
Sbjct: 74 VTALKNTSDFVYLKVAKPGSGE 95
>pdb|2AWW|A Chain A, Synapse Associated Protein 97 Pdz2 Domain Variant C378g
With C-Terminal Glur-A Peptide
pdb|2AWW|B Chain B, Synapse Associated Protein 97 Pdz2 Domain Variant C378g
With C-Terminal Glur-A Peptide
Length = 105
Score = 28.9 bits (63), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 33/75 (44%), Gaps = 7/75 (9%)
Query: 22 GYGFNLHGE------KGKTGQYIGKVDEGSPAEAAG-LKEGDHIIEVNSVNICNENHNQV 74
G GF++ G G Y+ + EG A G L+ GD ++ VNSV + H +
Sbjct: 15 GLGFSIAGGVGNQHIPGDNSIYVTSIVEGGAAHKDGKLQIGDKLLAVNSVGLEEVTHEEA 74
Query: 75 VQRIKAVPDETKLLV 89
V +K D L V
Sbjct: 75 VTALKNTSDFVYLKV 89
>pdb|2I0L|A Chain A, X-Ray Crystal Structure Of Sap97 Pdz2 Bound To The C-
Terminal Peptide Of Hpv18 E6.
pdb|2I0L|B Chain B, X-Ray Crystal Structure Of Sap97 Pdz2 Bound To The C-
Terminal Peptide Of Hpv18 E6
Length = 84
Score = 28.9 bits (63), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 33/73 (45%), Gaps = 7/73 (9%)
Query: 22 GYGFNLHGE------KGKTGQYIGKVDEGSPAEAAG-LKEGDHIIEVNSVNICNENHNQV 74
G GF++ G G Y+ K+ EG A G L+ GD ++ VNSV + H +
Sbjct: 10 GLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNSVCLEEVTHEEA 69
Query: 75 VQRIKAVPDETKL 87
V +K D L
Sbjct: 70 VTALKNTSDFVYL 82
>pdb|1WH1|A Chain A, Solution Structure Of The Fourth Pdz Domain Of Kiaa1095
Protein
Length = 124
Score = 28.9 bits (63), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Query: 35 GQYIGKVDEGSPAEAAG-LKEGDHIIEVNSVNICN 68
G YI ++D S A G ++EGD II++N + + N
Sbjct: 49 GIYISEIDPNSIAAKDGRIREGDRIIQINGIEVQN 83
>pdb|1VAE|A Chain A, Solution Structure Of The Pdz Domain Of Mouse
Rhophilin-2
Length = 111
Score = 28.9 bits (63), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
Query: 24 GFNLHGEKGKTGQYIGKVDEGSPAEAAGLKEGDHIIEVNSVNICNENHNQVVQRIKAVPD 83
GF L +G T + +D A AG KEGD+I+ + V+ ++V++ +K+
Sbjct: 29 GFTL---RGNTPVQVHFLDPHCSASLAGAKEGDYIVSIQGVDCKWLTVSEVMKLLKSFGG 85
Query: 84 E 84
E
Sbjct: 86 E 86
>pdb|1LCY|A Chain A, Crystal Structure Of The Mitochondrial Serine Protease
Htra2
Length = 325
Score = 28.5 bits (62), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 19/34 (55%)
Query: 35 GQYIGKVDEGSPAEAAGLKEGDHIIEVNSVNICN 68
G I KV GSPA AGL+ GD I+ + + N
Sbjct: 257 GVLIHKVILGSPAHRAGLRPGDVILAIGEQMVQN 290
>pdb|2X7Z|A Chain A, Crystal Structure Of The Sap97 Pdz2 I342w C378a Mutant
Protein Domain
Length = 99
Score = 28.5 bits (62), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 34/75 (45%), Gaps = 7/75 (9%)
Query: 22 GYGFNLHGE------KGKTGQYIGKVDEGSPAEAAG-LKEGDHIIEVNSVNICNENHNQV 74
G GF++ G G Y+ K+ EG A G L+ GD ++ VN+V + H +
Sbjct: 20 GLGFSIAGGVGNQHWPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNNVALEEVTHEEA 79
Query: 75 VQRIKAVPDETKLLV 89
V +K D L V
Sbjct: 80 VTALKNTSDFVYLKV 94
>pdb|1OBZ|A Chain A, Crystal Structure Of The Complex Of The Pdz Tandem Of
Syntenin With An Interleukin 5 Receptor Alpha Peptide.
pdb|1OBZ|B Chain B, Crystal Structure Of The Complex Of The Pdz Tandem Of
Syntenin With An Interleukin 5 Receptor Alpha Peptide.
pdb|1V1T|A Chain A, Crystal Structure Of The Pdz Tandem Of Human Syntenin In
Complex With Tneykv Peptide
pdb|1V1T|B Chain B, Crystal Structure Of The Pdz Tandem Of Human Syntenin In
Complex With Tneykv Peptide
pdb|1YBO|A Chain A, Crystal Structure Of The Pdz Tandem Of Human Syntenin
With Syndecan Peptide
pdb|1YBO|B Chain B, Crystal Structure Of The Pdz Tandem Of Human Syntenin
With Syndecan Peptide
pdb|1W9E|A Chain A, Crystal Structure Of The Pdz Tandem Of Human Syntenin In
Complex With Tnefyf Peptide
pdb|1W9E|B Chain B, Crystal Structure Of The Pdz Tandem Of Human Syntenin In
Complex With Tnefyf Peptide
pdb|1W9O|A Chain A, Crystal Structure Of The Pdz Tandem Of Human Syntenin In
Complex With Tneyyv Peptide
pdb|1W9O|B Chain B, Crystal Structure Of The Pdz Tandem Of Human Syntenin In
Complex With Tneyyv Peptide
pdb|1W9Q|A Chain A, Crystal Structure Of The Pdz Tandem Of Human Syntenin In
Complex With Tnefaf Peptide
pdb|1W9Q|B Chain B, Crystal Structure Of The Pdz Tandem Of Human Syntenin In
Complex With Tnefaf Peptide
Length = 166
Score = 28.5 bits (62), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 35 GQYIGKVDEGSPAEAAGLKEGDHIIEVNSVN 65
G ++ V SPA GL+ GD ++++N N
Sbjct: 28 GIFVQLVQANSPASLVGLRFGDQVLQINGEN 58
>pdb|2D92|A Chain A, Solution Structure Of The Fifth Pdz Domain Of Inad-Like
Protein
Length = 108
Score = 28.5 bits (62), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 23/42 (54%)
Query: 41 VDEGSPAEAAGLKEGDHIIEVNSVNICNENHNQVVQRIKAVP 82
V +G + GL GD ++ VN + N + + V+ +KAVP
Sbjct: 52 VADGVAERSGGLLPGDRLVSVNEYCLDNTSLAEAVEILKAVP 93
>pdb|2JIL|A Chain A, Crystal Structure Of 2nd Pdz Domain Of Glutamate
Receptor Interacting Protein-1 (Grip1)
pdb|2JIL|B Chain B, Crystal Structure Of 2nd Pdz Domain Of Glutamate
Receptor Interacting Protein-1 (Grip1)
Length = 97
Score = 28.5 bits (62), Expect = 5.1, Method: Composition-based stats.
Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Query: 38 IGKVDEGSPAEAAG-LKEGDHIIEVNSVNICNENHNQVVQRIKAVPDETKLLV 89
I V G PA+ G +K GD ++ V+ + + H + + +K E LL+
Sbjct: 36 ITSVRPGGPADREGTIKPGDRLLSVDGIRLLGTTHAEAMSILKQCGQEAALLI 88
>pdb|3MH5|A Chain A, Htra Proteases Are Activated By A Conserved Mechanism That
Can Be Triggered By Distinct Molecular Cues
pdb|3MH5|B Chain B, Htra Proteases Are Activated By A Conserved Mechanism That
Can Be Triggered By Distinct Molecular Cues
pdb|3MH6|A Chain A, Htra Proteases Are Activated By A Conserved Mechanism That
Can Be Triggered By Distinct Molecular Cues
Length = 456
Score = 28.5 bits (62), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 31 KGK-TGQYIGKVDEGSPAEAAGLKEGDHIIEVN 62
KGK G + V G+PA GLK+GD II N
Sbjct: 379 KGKDQGVVVNNVKTGTPAAQIGLKKGDVIIGAN 411
>pdb|2ZLE|A Chain A, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|B Chain B, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|C Chain C, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|E Chain E, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|F Chain F, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|G Chain G, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|H Chain H, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|I Chain I, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|J Chain J, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|K Chain K, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|L Chain L, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|M Chain M, Cryo-Em Structure Of Degp12OMP
Length = 448
Score = 28.5 bits (62), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 31 KGK-TGQYIGKVDEGSPAEAAGLKEGDHIIEVN 62
KGK G + V G+PA GLK+GD II N
Sbjct: 379 KGKDQGVVVNNVKTGTPAAQIGLKKGDVIIGAN 411
>pdb|3OTP|A Chain A, Crystal Structure Of The Degp Dodecamer With A Model
Substrate
pdb|3OTP|B Chain B, Crystal Structure Of The Degp Dodecamer With A Model
Substrate
pdb|3OTP|C Chain C, Crystal Structure Of The Degp Dodecamer With A Model
Substrate
pdb|3OTP|D Chain D, Crystal Structure Of The Degp Dodecamer With A Model
Substrate
pdb|3OTP|E Chain E, Crystal Structure Of The Degp Dodecamer With A Model
Substrate
pdb|3OTP|F Chain F, Crystal Structure Of The Degp Dodecamer With A Model
Substrate
Length = 459
Score = 28.5 bits (62), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 31 KGK-TGQYIGKVDEGSPAEAAGLKEGDHIIEVNSVNICN 68
KGK G + V G+PA GLK+GD II N + N
Sbjct: 379 KGKDQGVVVNNVKTGTPAAQIGLKKGDVIIGANQQAVKN 417
>pdb|3MH4|A Chain A, Htra Proteases Are Activated By A Conserved Mechanism That
Can Be Triggered By Distinct Molecular Cues
pdb|3MH4|B Chain B, Htra Proteases Are Activated By A Conserved Mechanism That
Can Be Triggered By Distinct Molecular Cues
Length = 456
Score = 28.5 bits (62), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 31 KGK-TGQYIGKVDEGSPAEAAGLKEGDHIIEVN 62
KGK G + V G+PA GLK+GD II N
Sbjct: 379 KGKDQGVVVNNVKTGTPAAQIGLKKGDVIIGAN 411
>pdb|4A8D|A Chain A, Degp Dodecamer With Bound Omp
pdb|4A8D|B Chain B, Degp Dodecamer With Bound Omp
pdb|4A8D|C Chain C, Degp Dodecamer With Bound Omp
pdb|4A8D|D Chain D, Degp Dodecamer With Bound Omp
pdb|4A8D|E Chain E, Degp Dodecamer With Bound Omp
pdb|4A8D|F Chain F, Degp Dodecamer With Bound Omp
pdb|4A8D|G Chain G, Degp Dodecamer With Bound Omp
pdb|4A8D|H Chain H, Degp Dodecamer With Bound Omp
pdb|4A8D|I Chain I, Degp Dodecamer With Bound Omp
pdb|4A8D|J Chain J, Degp Dodecamer With Bound Omp
pdb|4A8D|K Chain K, Degp Dodecamer With Bound Omp
pdb|4A8D|L Chain L, Degp Dodecamer With Bound Omp
Length = 448
Score = 28.5 bits (62), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 31 KGK-TGQYIGKVDEGSPAEAAGLKEGDHIIEVN 62
KGK G + V G+PA GLK+GD II N
Sbjct: 379 KGKDQGVVVNNVKTGTPAAQIGLKKGDVIIGAN 411
>pdb|1M5Z|A Chain A, The Pdz7 Of Glutamate Receptor Interacting Protein Binds
To Its Target Via A Novel Hydrophobic Surface Area
Length = 91
Score = 28.5 bits (62), Expect = 5.4, Method: Composition-based stats.
Identities = 16/60 (26%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Query: 6 TPV-VRLCHILKWTDFDGYGFNLHGEKGKTGQYIGKVDEGSPAEAAGLKEGDHIIEVNSV 64
TPV + + K + + +GF++ + G Y+ + P + GLK D +++VN V
Sbjct: 3 TPVELHKVTLYKDSGMEDFGFSVADGLLEKGVYVKNIRPAGPGDLGGLKPYDRLLQVNHV 62
>pdb|1N99|A Chain A, Crystal Structure Of The Pdz Tandem Of Human Syntenin
pdb|1N99|B Chain B, Crystal Structure Of The Pdz Tandem Of Human Syntenin
Length = 166
Score = 28.1 bits (61), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 9/45 (20%)
Query: 30 EKGKTGQYIGKVDEG---------SPAEAAGLKEGDHIIEVNSVN 65
+ GK G + +D G SPA GL+ GD ++++N N
Sbjct: 14 QDGKIGLRLKSIDNGIFVQLVQANSPASLVGLRFGDQVLQINGEN 58
>pdb|4A8A|A Chain A, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|B Chain B, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|C Chain C, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|D Chain D, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|E Chain E, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|F Chain F, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|G Chain G, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|H Chain H, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|I Chain I, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|J Chain J, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|K Chain K, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|L Chain L, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8B|A Chain A, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|B Chain B, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|C Chain C, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|D Chain D, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|E Chain E, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|F Chain F, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|G Chain G, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|H Chain H, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|I Chain I, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|J Chain J, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|K Chain K, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|L Chain L, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8C|A Chain A, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|B Chain B, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|C Chain C, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|D Chain D, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|E Chain E, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|F Chain F, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|G Chain G, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|H Chain H, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|I Chain I, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|J Chain J, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|K Chain K, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|L Chain L, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A9G|A Chain A, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|B Chain B, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|C Chain C, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|D Chain D, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|E Chain E, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|F Chain F, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|G Chain G, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|H Chain H, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|I Chain I, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|J Chain J, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|K Chain K, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|L Chain L, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|M Chain M, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|N Chain N, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|O Chain O, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|P Chain P, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|Q Chain Q, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|R Chain R, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|S Chain S, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|T Chain T, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|U Chain U, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|V Chain V, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|W Chain W, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|Y Chain Y, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
Length = 436
Score = 28.1 bits (61), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 20/31 (64%)
Query: 32 GKTGQYIGKVDEGSPAEAAGLKEGDHIIEVN 62
G G I +V +GSPA AGL++ D II VN
Sbjct: 361 GGKGIKIDEVVKGSPAAQAGLQKDDVIIGVN 391
>pdb|4G69|A Chain A, Structure Of The Human Discs Large 1 Pdz2 - Adenomatous
Polyposis Coli Cytoskeletal Polarity Complex
Length = 100
Score = 28.1 bits (61), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 34/75 (45%), Gaps = 7/75 (9%)
Query: 22 GYGFNLHGE------KGKTGQYIGKVDEGSPAEAAG-LKEGDHIIEVNSVNICNENHNQV 74
G GF++ G G Y+ K+ EG A G L+ GD ++ VN+V + H +
Sbjct: 21 GLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNNVCLEEVTHEEA 80
Query: 75 VQRIKAVPDETKLLV 89
V +K D L V
Sbjct: 81 VTALKNTSDFVYLKV 95
>pdb|3RL8|A Chain A, Crytal Structure Of Hdlg1-Pdz2 Complexed With Apc
pdb|3RL8|B Chain B, Crytal Structure Of Hdlg1-Pdz2 Complexed With Apc
pdb|3RL8|C Chain C, Crytal Structure Of Hdlg1-Pdz2 Complexed With Apc
pdb|3RL8|D Chain D, Crytal Structure Of Hdlg1-Pdz2 Complexed With Apc
pdb|3RL8|E Chain E, Crytal Structure Of Hdlg1-Pdz2 Complexed With Apc
Length = 105
Score = 28.1 bits (61), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 34/75 (45%), Gaps = 7/75 (9%)
Query: 22 GYGFNLHGE------KGKTGQYIGKVDEGSPAEAAG-LKEGDHIIEVNSVNICNENHNQV 74
G GF++ G G Y+ K+ EG A G L+ GD ++ VN+V + H +
Sbjct: 23 GLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNNVCLEEVTHEEA 82
Query: 75 VQRIKAVPDETKLLV 89
V +K D L V
Sbjct: 83 VTALKNTSDFVYLKV 97
>pdb|3MH7|A Chain A, Htra Proteases Are Activated By A Conserved Mechanism That
Can Be Triggered By Distinct Molecular Cues
Length = 456
Score = 28.1 bits (61), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 31 KGK-TGQYIGKVDEGSPAEAAGLKEGDHIIEVNSVNICN 68
KGK G + V G+PA GLK+GD II N + N
Sbjct: 379 KGKDQGVVVNNVKTGTPAAQIGLKKGDVIIGANQQAVKN 417
>pdb|3CS0|A Chain A, Crystal Structure Of Degp24
Length = 448
Score = 28.1 bits (61), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 31 KGK-TGQYIGKVDEGSPAEAAGLKEGDHIIEVN 62
KGK G + V G+PA GLK+GD II N
Sbjct: 379 KGKDQGVVVNNVKTGTPAAQIGLKKGDVIIGAN 411
>pdb|1KY9|A Chain A, Crystal Structure Of Degp (Htra)
pdb|1KY9|B Chain B, Crystal Structure Of Degp (Htra)
pdb|3OU0|A Chain A, Re-Refined 3cs0
Length = 448
Score = 28.1 bits (61), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 31 KGK-TGQYIGKVDEGSPAEAAGLKEGDHIIEVN 62
KGK G + V G+PA GLK+GD II N
Sbjct: 379 KGKDQGVVVNNVKTGTPAAQIGLKKGDVIIGAN 411
>pdb|1Q7X|A Chain A, Solution Structure Of The Alternatively Spliced Pdz2
Domain (Pdz2b) Of Ptp-Bas (Hptp1e)
Length = 108
Score = 27.7 bits (60), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 3/71 (4%)
Query: 20 FDGYGFNLHGEKGKTGQYIGKVDEGSPAEAAG-LKEGDHIIEVNSVNICNENHNQVVQRI 78
FD G N G G Y+ V AE+ G + +GD ++ VN V++ H Q V+ +
Sbjct: 30 FDKGGVNTSVRHG--GIYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETL 87
Query: 79 KAVPDETKLLV 89
+ LL+
Sbjct: 88 RNTGQVVHLLL 98
>pdb|2OQS|A Chain A, Structure Of The HdlgSAP97 PDZ2 IN COMPLEX WITH HPV-18
Papillomavirus E6 Peptide
Length = 97
Score = 27.7 bits (60), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 34/75 (45%), Gaps = 7/75 (9%)
Query: 22 GYGFNLHGE------KGKTGQYIGKVDEGSPAEAAG-LKEGDHIIEVNSVNICNENHNQV 74
G GF++ G G Y+ K+ EG A G L+ GD ++ VN+V + H +
Sbjct: 11 GLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNNVCLEEVTHEEA 70
Query: 75 VQRIKAVPDETKLLV 89
V +K D L V
Sbjct: 71 VTALKNTSDFVYLKV 85
>pdb|2FTC|K Chain K, Structural Model For The Large Subunit Of The Mammalian
Mitochondrial Ribosome
Length = 98
Score = 27.7 bits (60), Expect = 8.5, Method: Composition-based stats.
Identities = 23/74 (31%), Positives = 32/74 (43%), Gaps = 6/74 (8%)
Query: 14 ILKWTDFDGYGFNLHGEKGKTGQYIGKVDEGSPAEAAGLKEGDHIIEVNSVNICNENHNQ 73
IL+ T D Y GK Q++G + S ++IE V IC E +N
Sbjct: 9 ILRVTTADPYA------SGKISQFLGICIQRSGRGLGATFILRNVIEGQGVEICFELYNP 62
Query: 74 VVQRIKAVPDETKL 87
VQ I+ V E +L
Sbjct: 63 RVQEIQVVKLEKRL 76
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.310 0.127 0.350
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,857,956
Number of Sequences: 62578
Number of extensions: 229649
Number of successful extensions: 602
Number of sequences better than 100.0: 181
Number of HSP's better than 100.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 48
Number of HSP's that attempted gapping in prelim test: 434
Number of HSP's gapped (non-prelim): 195
length of query: 309
length of database: 14,973,337
effective HSP length: 99
effective length of query: 210
effective length of database: 8,778,115
effective search space: 1843404150
effective search space used: 1843404150
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 51 (24.3 bits)