Query psy10428
Match_columns 309
No_of_seqs 214 out of 1911
Neff 5.9
Searched_HMMs 46136
Date Fri Aug 16 17:37:05 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10428.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10428hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00595 PDZ: PDZ domain (Also 99.3 1E-11 2.2E-16 95.2 10.3 76 11-87 1-78 (81)
2 KOG3550|consensus 99.3 1.7E-11 3.7E-16 105.5 7.9 83 7-92 89-173 (207)
3 cd00992 PDZ_signaling PDZ doma 99.0 4.5E-09 9.8E-14 79.7 11.6 74 10-84 2-76 (82)
4 KOG3551|consensus 99.0 7.7E-10 1.7E-14 107.3 8.4 98 1-99 77-177 (506)
5 PF13180 PDZ_2: PDZ domain; PD 99.0 6.9E-09 1.5E-13 79.9 11.0 75 22-98 2-77 (82)
6 KOG3209|consensus 99.0 9.8E-10 2.1E-14 112.8 8.0 84 9-93 754-838 (984)
7 cd00136 PDZ PDZ domain, also c 99.0 6E-09 1.3E-13 77.0 10.1 66 22-88 2-67 (70)
8 smart00228 PDZ Domain present 98.9 2.4E-08 5.1E-13 75.6 12.5 80 10-92 3-83 (85)
9 KOG3209|consensus 98.9 3.2E-09 7E-14 109.1 8.1 82 9-93 899-982 (984)
10 cd00988 PDZ_CTP_protease PDZ d 98.8 8.7E-08 1.9E-12 73.4 11.4 71 21-93 2-72 (85)
11 cd00989 PDZ_metalloprotease PD 98.7 2E-07 4.4E-12 70.3 11.7 69 23-95 3-71 (79)
12 KOG1892|consensus 98.7 5E-08 1.1E-12 103.0 10.4 83 6-91 931-1018(1629)
13 KOG3549|consensus 98.7 6.3E-08 1.4E-12 93.2 8.4 82 7-89 53-136 (505)
14 cd00991 PDZ_archaeal_metallopr 98.6 5.1E-07 1.1E-11 69.2 9.6 61 34-96 10-71 (79)
15 KOG3553|consensus 98.5 1.3E-07 2.8E-12 76.5 5.3 59 23-81 37-106 (124)
16 cd00990 PDZ_glycyl_aminopeptid 98.5 2.2E-06 4.9E-11 64.9 10.6 69 23-97 3-71 (80)
17 cd00986 PDZ_LON_protease PDZ d 98.4 3.4E-06 7.3E-11 64.2 10.4 60 35-97 9-69 (79)
18 cd00987 PDZ_serine_protease PD 98.4 3.1E-06 6.8E-11 65.1 10.0 60 34-95 24-84 (90)
19 PLN00049 carboxyl-terminal pro 98.4 3.9E-06 8.5E-11 82.8 12.7 77 19-95 83-163 (389)
20 KOG3552|consensus 98.3 4E-07 8.8E-12 96.1 4.9 79 6-92 54-132 (1298)
21 TIGR00225 prc C-terminal pepti 98.3 6.8E-06 1.5E-10 79.3 10.8 74 20-95 50-123 (334)
22 KOG3580|consensus 98.3 9.9E-07 2.1E-11 89.9 5.1 82 7-92 406-488 (1027)
23 KOG3606|consensus 98.2 3.5E-06 7.7E-11 79.0 7.1 82 10-92 160-252 (358)
24 COG0793 Prc Periplasmic protea 98.1 1.6E-05 3.4E-10 79.2 10.8 74 19-93 98-171 (406)
25 TIGR00054 RIP metalloprotease 98.1 2.3E-05 4.9E-10 78.2 10.6 64 34-99 203-266 (420)
26 PRK10779 zinc metallopeptidase 98.0 4.1E-05 8.9E-10 76.9 10.8 63 35-99 222-284 (449)
27 PRK10139 serine endoprotease; 98.0 3.8E-05 8.3E-10 77.4 10.3 62 34-98 390-451 (455)
28 PRK10139 serine endoprotease; 98.0 4.8E-05 1E-09 76.8 10.9 64 34-99 290-354 (455)
29 TIGR01713 typeII_sec_gspC gene 98.0 7.5E-05 1.6E-09 70.2 11.5 62 34-97 191-253 (259)
30 PRK10942 serine endoprotease; 97.9 6.9E-05 1.5E-09 75.9 11.3 62 34-98 408-469 (473)
31 PRK10898 serine endoprotease; 97.9 8.2E-05 1.8E-09 72.7 11.4 62 34-97 279-341 (353)
32 TIGR02038 protease_degS peripl 97.9 6.7E-05 1.4E-09 73.1 10.7 62 34-97 278-340 (351)
33 KOG3542|consensus 97.9 1.4E-05 3E-10 82.7 5.9 81 2-82 529-610 (1283)
34 KOG3605|consensus 97.9 7.1E-06 1.5E-10 84.4 3.7 81 3-89 731-811 (829)
35 TIGR02037 degP_htrA_DO peripla 97.9 6.3E-05 1.4E-09 74.9 9.9 62 34-97 362-424 (428)
36 KOG3580|consensus 97.9 2.7E-05 5.9E-10 79.7 6.9 84 8-96 198-282 (1027)
37 KOG0609|consensus 97.8 9.1E-05 2E-09 75.1 10.1 85 7-93 121-206 (542)
38 TIGR02037 degP_htrA_DO peripla 97.8 9.6E-05 2.1E-09 73.6 10.1 62 34-97 257-319 (428)
39 PRK10942 serine endoprotease; 97.8 0.00015 3.3E-09 73.5 10.8 63 34-98 311-374 (473)
40 PF04495 GRASP55_65: GRASP55/6 97.8 0.0004 8.6E-09 59.5 11.6 99 6-106 8-114 (138)
41 PRK11186 carboxy-terminal prot 97.8 9.4E-05 2E-09 77.8 9.2 72 19-92 242-319 (667)
42 KOG3651|consensus 97.7 0.00012 2.7E-09 69.7 8.7 77 9-86 5-83 (429)
43 TIGR02860 spore_IV_B stage IV 97.7 0.00049 1.1E-08 68.4 12.3 72 21-98 96-175 (402)
44 KOG3571|consensus 97.7 0.00012 2.6E-09 73.7 8.0 73 8-81 249-325 (626)
45 PRK10779 zinc metallopeptidase 97.6 0.00023 5E-09 71.5 9.5 64 34-99 126-190 (449)
46 TIGR03279 cyano_FeS_chp putati 97.5 0.00047 1E-08 69.1 8.8 40 38-79 2-41 (433)
47 KOG0606|consensus 97.3 0.00033 7.1E-09 76.2 6.0 75 12-88 630-712 (1205)
48 TIGR00054 RIP metalloprotease 97.3 0.00062 1.3E-08 68.0 7.5 59 34-95 128-186 (420)
49 PF14685 Tricorn_PDZ: Tricorn 96.8 0.0061 1.3E-07 48.4 7.7 59 35-95 13-81 (88)
50 KOG3938|consensus 96.7 0.0025 5.4E-08 60.0 5.4 74 6-82 124-198 (334)
51 KOG3129|consensus 96.7 0.005 1.1E-07 56.2 7.0 62 35-96 140-202 (231)
52 COG0265 DegQ Trypsin-like seri 96.7 0.014 3E-07 56.5 10.3 63 33-97 269-332 (347)
53 KOG3605|consensus 96.1 0.0089 1.9E-07 62.2 5.8 74 10-84 647-724 (829)
54 PRK09681 putative type II secr 96.1 0.034 7.3E-07 52.9 9.0 61 35-97 205-269 (276)
55 COG3975 Predicted protease wit 95.8 0.014 3E-07 59.7 5.4 41 22-64 452-492 (558)
56 KOG3532|consensus 95.5 0.057 1.2E-06 56.8 8.5 68 21-91 386-453 (1051)
57 KOG1320|consensus 95.2 0.1 2.2E-06 53.1 9.2 60 35-96 399-458 (473)
58 KOG1738|consensus 95.0 0.047 1E-06 56.7 6.3 73 19-92 211-284 (638)
59 KOG4407|consensus 95.0 0.025 5.3E-07 62.9 4.4 57 36-92 145-201 (1973)
60 COG3031 PulC Type II secretory 94.3 0.3 6.5E-06 45.7 9.1 73 9-96 195-268 (275)
61 KOG1421|consensus 94.2 0.19 4.2E-06 53.1 8.3 59 36-97 305-363 (955)
62 PF12812 PDZ_1: PDZ-like domai 93.4 0.28 6E-06 38.0 6.1 47 35-83 31-77 (78)
63 COG3480 SdrC Predicted secrete 90.3 1 2.2E-05 43.8 7.3 57 34-93 130-187 (342)
64 COG0750 Predicted membrane-ass 90.1 1.2 2.6E-05 43.1 7.9 55 36-92 131-188 (375)
65 KOG3834|consensus 89.5 1.8 3.9E-05 43.6 8.5 80 7-90 76-164 (462)
66 PF09007 EBP50_C-term: EBP50, 88.3 0.086 1.9E-06 35.8 -1.0 35 271-307 4-39 (41)
67 KOG3834|consensus 82.0 4.2 9.1E-05 41.1 6.8 60 34-94 15-75 (462)
68 PF14178 YppF: YppF-like prote 78.1 2.2 4.8E-05 31.6 2.6 32 275-306 1-34 (60)
69 KOG1421|consensus 73.8 7.7 0.00017 41.5 6.2 49 34-85 862-910 (955)
70 KOG4371|consensus 71.9 4.4 9.5E-05 45.0 4.0 67 21-87 1257-1324(1332)
71 KOG0792|consensus 69.6 2.7 5.9E-05 46.5 2.0 63 21-83 716-799 (1144)
72 PF11874 DUF3394: Domain of un 67.5 9.1 0.0002 34.5 4.5 37 23-61 113-149 (183)
73 KOG2921|consensus 62.4 11 0.00023 38.0 4.3 46 34-81 220-266 (484)
74 KOG4371|consensus 53.5 13 0.00028 41.6 3.5 81 8-93 1147-1227(1332)
75 PF14178 YppF: YppF-like prote 28.4 33 0.00071 25.5 1.2 29 212-240 1-31 (60)
76 cd04459 Rho_CSD Rho_CSD: Rho p 27.1 88 0.0019 23.6 3.4 36 21-60 10-49 (68)
77 PF08031 BBE: Berberine and be 26.7 28 0.00061 24.0 0.6 16 280-295 24-39 (47)
78 COG5233 GRH1 Peripheral Golgi 25.9 45 0.00098 32.8 2.0 31 36-66 65-95 (417)
79 PF02315 MDH: Methanol dehydro 25.2 25 0.00054 28.1 0.1 21 288-308 48-68 (93)
80 PRK15464 cold shock-like prote 24.2 1.4E+02 0.0031 22.4 4.1 42 12-59 9-52 (70)
81 smart00213 UBQ Ubiquitin homol 22.8 62 0.0014 22.3 1.8 24 270-293 15-38 (64)
82 PF11338 DUF3140: Protein of u 22.1 54 0.0012 26.4 1.5 15 273-287 6-20 (92)
83 cd01804 midnolin_N Ubiquitin-l 20.7 66 0.0014 24.3 1.7 25 271-295 18-42 (78)
84 PRK10354 RNA chaperone/anti-te 20.4 2.4E+02 0.0053 20.9 4.7 35 21-59 16-52 (70)
No 1
>PF00595 PDZ: PDZ domain (Also known as DHR or GLGF) Coordinates are not yet available; InterPro: IPR001478 PDZ domains are found in diverse signalling proteins in bacteria, yeasts, plants, insects and vertebrates [, ]. PDZ domains can occur in one or multiple copies and are nearly always found in cytoplasmic proteins. They bind either the carboxyl-terminal sequences of proteins or internal peptide sequences []. In most cases, interaction between a PDZ domain and its target is constitutive, with a binding affinity of 1 to 10 microns. However, agonist-dependent activation of cell surface receptors is sometimes required to promote interaction with a PDZ protein. PDZ domain proteins are frequently associated with the plasma membrane, a compartment where high concentrations of phosphatidylinositol 4,5-bisphosphate (PIP2) are found. Direct interaction between PIP2 and a subset of class II PDZ domains (syntenin, CASK, Tiam-1) has been demonstrated. PDZ domains consist of 80 to 90 amino acids comprising six beta-strands (beta-A to beta-F) and two alpha-helices, A and B, compactly arranged in a globular structure. Peptide binding of the ligand takes place in an elongated surface groove as an anti-parallel beta-strand interacts with the beta-B strand and the B helix. The structure of PDZ domains allows binding to a free carboxylate group at the end of a peptide through a carboxylate-binding loop between the beta-A and beta-B strands.; GO: 0005515 protein binding; PDB: 3AXA_A 1WF8_A 1QAV_B 1QAU_A 1B8Q_A 1MC7_A 2KAW_A 1I16_A 1VB7_A 1WI4_A ....
Probab=99.34 E-value=1e-11 Score=95.18 Aligned_cols=76 Identities=36% Similarity=0.566 Sum_probs=67.4
Q ss_pred EEEEeeCCCCcceeEEEeccCCC--CCeEEEEeCCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCCeEE
Q psy10428 11 LCHILKWTDFDGYGFNLHGEKGK--TGQYIGKVDEGSPAEAAGLKEGDHIIEVNSVNICNENHNQVVQRIKAVPDETKL 87 (309)
Q Consensus 11 ~v~L~K~~~~~G~GFsl~ggk~~--~Gi~V~~V~pgSpA~~AGLq~GD~Il~VNG~~V~~~sh~dvv~~Lk~s~~~vvl 87 (309)
++.|.|. ...+|||.+.++... .+++|..|.++|+|+++||++||+|++|||+++.++++.+++.+++.+.+.+.+
T Consensus 1 ~v~l~k~-~~~~lG~~l~~~~~~~~~~~~V~~v~~~~~a~~~gl~~GD~Il~INg~~v~~~~~~~~~~~l~~~~~~v~L 78 (81)
T PF00595_consen 1 QVTLEKS-GNGPLGFTLRGGSDNDEKGVFVSSVVPGSPAERAGLKVGDRILEINGQSVRGMSHDEVVQLLKSASNPVTL 78 (81)
T ss_dssp EEEEEES-TTSBSSEEEEEESTSSSEEEEEEEECTTSHHHHHTSSTTEEEEEETTEESTTSBHHHHHHHHHHSTSEEEE
T ss_pred CEEEEeC-CCCCcCEEEEecCCCCcCCEEEEEEeCCChHHhcccchhhhhheeCCEeCCCCCHHHHHHHHHCCCCcEEE
Confidence 4678885 359999999998765 499999999999999999999999999999999999999999999999874433
No 2
>KOG3550|consensus
Probab=99.25 E-value=1.7e-11 Score=105.55 Aligned_cols=83 Identities=35% Similarity=0.570 Sum_probs=74.6
Q ss_pred CceEEEEEeeCCCCcceeEEEeccCCC-CCeEEEEeCCCCHHHHcC-CCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCC
Q psy10428 7 PVVRLCHILKWTDFDGYGFNLHGEKGK-TGQYIGKVDEGSPAEAAG-LKEGDHIIEVNSVNICNENHNQVVQRIKAVPDE 84 (309)
Q Consensus 7 ~~pR~v~L~K~~~~~G~GFsl~ggk~~-~Gi~V~~V~pgSpA~~AG-Lq~GD~Il~VNG~~V~~~sh~dvv~~Lk~s~~~ 84 (309)
..||.|.|-|.. .|+||.+.||+.+ .+|||+.|.||+.|++.| |+.||++++|||+++.+..|+.++++|+.+.+.
T Consensus 89 ahprvvelpktd--eglgfnvmggkeqnspiyisriipggvadrhgglkrgdqllsvngvsvege~hekavellkaa~gs 166 (207)
T KOG3550|consen 89 AHPRVVELPKTD--EGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEHHEKAVELLKAAVGS 166 (207)
T ss_pred CCCceeecCccc--cccceeeccCcccCCceEEEeecCCccccccCcccccceeEeecceeecchhhHHHHHHHHHhcCc
Confidence 468999999987 9999999999864 689999999999999988 999999999999999999999999999999877
Q ss_pred eEEEEEEe
Q psy10428 85 TKLLVVDV 92 (309)
Q Consensus 85 vvllvv~r 92 (309)
+.+ +++.
T Consensus 167 vkl-vvry 173 (207)
T KOG3550|consen 167 VKL-VVRY 173 (207)
T ss_pred EEE-EEec
Confidence 754 4443
No 3
>cd00992 PDZ_signaling PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of PDZ domains an N-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in proteases.
Probab=99.03 E-value=4.5e-09 Score=79.66 Aligned_cols=74 Identities=38% Similarity=0.623 Sum_probs=63.5
Q ss_pred EEEEEeeCCCCcceeEEEeccCC-CCCeEEEEeCCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCC
Q psy10428 10 RLCHILKWTDFDGYGFNLHGEKG-KTGQYIGKVDEGSPAEAAGLKEGDHIIEVNSVNICNENHNQVVQRIKAVPDE 84 (309)
Q Consensus 10 R~v~L~K~~~~~G~GFsl~ggk~-~~Gi~V~~V~pgSpA~~AGLq~GD~Il~VNG~~V~~~sh~dvv~~Lk~s~~~ 84 (309)
+.|.|.+.. ..+|||.+.+... ..+++|..|.++++|+.+||++||+|++|||.++...++.++...++.....
T Consensus 2 ~~~~l~~~~-~~~~G~~~~~~~~~~~~~~V~~v~~~s~a~~~gl~~GD~I~~ing~~i~~~~~~~~~~~l~~~~~~ 76 (82)
T cd00992 2 RTVTLRKDP-GGGLGFSLRGGKDSGGGIFVSRVEPGGPAERGGLRVGDRILEVNGVSVEGLTHEEAVELLKNSGDE 76 (82)
T ss_pred EEEEEEeCC-CCCcCEEEeCcccCCCCeEEEEECCCChHHhCCCCCCCEEEEECCEEcCccCHHHHHHHHHhCCCe
Confidence 567888873 4889999987642 2589999999999999999999999999999999878999999999886553
No 4
>KOG3551|consensus
Probab=99.02 E-value=7.7e-10 Score=107.27 Aligned_cols=98 Identities=30% Similarity=0.442 Sum_probs=81.2
Q ss_pred CCCCCCCceEEEEEeeCCCCcceeEEEeccC-CCCCeEEEEeCCCCHHHHcC-CCCCCEEEEECCEEcCCCCHHHHHHHH
Q psy10428 1 MSEDKTPVVRLCHILKWTDFDGYGFNLHGEK-GKTGQYIGKVDEGSPAEAAG-LKEGDHIIEVNSVNICNENHNQVVQRI 78 (309)
Q Consensus 1 ~~e~~~~~pR~v~L~K~~~~~G~GFsl~ggk-~~~Gi~V~~V~pgSpA~~AG-Lq~GD~Il~VNG~~V~~~sh~dvv~~L 78 (309)
|++......|.|+++|- +..|+|++|.||+ +.++|+|+.|.+|-.|++++ |..||.|++|||.++.+.+|++++++|
T Consensus 77 ~p~~~~~~~R~V~V~K~-d~gGLGISIKGGreNkMPIlISKIFkGlAADQt~aL~~gDaIlSVNG~dL~~AtHdeAVqaL 155 (506)
T KOG3551|consen 77 MPENEAEAERRVRVVKQ-DAGGLGISIKGGRENKMPILISKIFKGLAADQTGALFLGDAILSVNGEDLRDATHDEAVQAL 155 (506)
T ss_pred CchhhhcccceeEEEEe-cCCcceEEeecCcccCCceehhHhccccccccccceeeccEEEEecchhhhhcchHHHHHHH
Confidence 45556666688998887 4689999999997 56899999999999999999 999999999999999999999999999
Q ss_pred HhCCCCeEEE-EEEeCCeeeeE
Q psy10428 79 KAVPDETKLL-VVDVASEEYFK 99 (309)
Q Consensus 79 k~s~~~vvll-vv~r~~~~~~~ 99 (309)
+..+.+|.+- .+.|+...+++
T Consensus 156 KraGkeV~levKy~REvtPy~k 177 (506)
T KOG3551|consen 156 KRAGKEVLLEVKYMREVTPYFK 177 (506)
T ss_pred HhhCceeeeeeeeehhcchhhc
Confidence 9998776543 23445444544
No 5
>PF13180 PDZ_2: PDZ domain; PDB: 2L97_A 1Y8T_A 2Z9I_A 1LCY_A 2PZD_B 2P3W_A 1VCW_C 1TE0_B 1SOZ_C 1SOT_C ....
Probab=98.98 E-value=6.9e-09 Score=79.92 Aligned_cols=75 Identities=29% Similarity=0.431 Sum_probs=60.9
Q ss_pred ceeEEEeccCCCCCeEEEEeCCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHh-CCCCeEEEEEEeCCeeee
Q psy10428 22 GYGFNLHGEKGKTGQYIGKVDEGSPAEAAGLKEGDHIIEVNSVNICNENHNQVVQRIKA-VPDETKLLVVDVASEEYF 98 (309)
Q Consensus 22 G~GFsl~ggk~~~Gi~V~~V~pgSpA~~AGLq~GD~Il~VNG~~V~~~sh~dvv~~Lk~-s~~~vvllvv~r~~~~~~ 98 (309)
++|+.+.......+++|..|.++|||+++||++||+|++|||..+ .++.++...+.. ..+..+.+.+.|++....
T Consensus 2 ~lGv~~~~~~~~~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~v--~~~~~~~~~l~~~~~g~~v~l~v~R~g~~~~ 77 (82)
T PF13180_consen 2 GLGVTVQNLSDTGGVVVVSVIPGSPAAKAGLQPGDIILAINGKPV--NSSEDLVNILSKGKPGDTVTLTVLRDGEELT 77 (82)
T ss_dssp E-SEEEEECSCSSSEEEEEESTTSHHHHTTS-TTEEEEEETTEES--SSHHHHHHHHHCSSTTSEEEEEEEETTEEEE
T ss_pred EECeEEEEccCCCeEEEEEeCCCCcHHHCCCCCCcEEEEECCEEc--CCHHHHHHHHHhCCCCCEEEEEEEECCEEEE
Confidence 467777766544589999999999999999999999999999999 899999988854 456777788888776553
No 6
>KOG3209|consensus
Probab=98.98 E-value=9.8e-10 Score=112.83 Aligned_cols=84 Identities=31% Similarity=0.456 Sum_probs=73.6
Q ss_pred eEEEEEeeCCCCcceeEEEeccCCCCCeEEEEeCCCCHHHHcC-CCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCCeEE
Q psy10428 9 VRLCHILKWTDFDGYGFNLHGEKGKTGQYIGKVDEGSPAEAAG-LKEGDHIIEVNSVNICNENHNQVVQRIKAVPDETKL 87 (309)
Q Consensus 9 pR~v~L~K~~~~~G~GFsl~ggk~~~Gi~V~~V~pgSpA~~AG-Lq~GD~Il~VNG~~V~~~sh~dvv~~Lk~s~~~vvl 87 (309)
+-.|.|+|.. .+||||.|...++.++.-|+.|.+||||+++| |++||+|++|||++|...+|.+++.+|+.++..|.+
T Consensus 754 ~yDV~lhR~E-NeGFGFVi~sS~~kp~sgiGrIieGSPAdRCgkLkVGDrilAVNG~sI~~lsHadiv~LIKdaGlsVtL 832 (984)
T KOG3209|consen 754 PYDVVLHRKE-NEGFGFVIMSSQNKPESGIGRIIEGSPADRCGKLKVGDRILAVNGQSILNLSHADIVSLIKDAGLSVTL 832 (984)
T ss_pred CeeeEEeccc-CCceeEEEEecccCCCCCccccccCChhHhhccccccceEEEecCeeeeccCchhHHHHHHhcCceEEE
Confidence 5567888874 59999999999887777799999999999999 999999999999999999999999999999877766
Q ss_pred EEEEeC
Q psy10428 88 LVVDVA 93 (309)
Q Consensus 88 lvv~r~ 93 (309)
.++..+
T Consensus 833 tIip~e 838 (984)
T KOG3209|consen 833 TIIPPE 838 (984)
T ss_pred EEcChh
Confidence 555443
No 7
>cd00136 PDZ PDZ domain, also called DHR (Dlg homologous region) or GLGF (after a conserved sequence motif). Many PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. Heterodimerization through PDZ-PDZ domain interactions adds to the domain's versatility, and PDZ domain-mediated interactions may be modulated dynamically through target phosphorylation. Some PDZ domains play a role in scaffolding supramolecular complexes. PDZ domains are found in diverse signaling proteins in bacteria, archebacteria, and eurkayotes. This CD contains two distinct structural subgroups with either a N- or C-terminal beta-strand forming the peptide-binding groove base. The circular permutation placing the strand on the N-terminus appears to be found in Eumetazoa only, while the C-terminal variant is found in all three kingdoms of life, and seems to co-occur with protease domains. PDZ domains have been named after PSD95(pos
Probab=98.98 E-value=6e-09 Score=77.01 Aligned_cols=66 Identities=36% Similarity=0.559 Sum_probs=56.7
Q ss_pred ceeEEEeccCCCCCeEEEEeCCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCCeEEE
Q psy10428 22 GYGFNLHGEKGKTGQYIGKVDEGSPAEAAGLKEGDHIIEVNSVNICNENHNQVVQRIKAVPDETKLL 88 (309)
Q Consensus 22 G~GFsl~ggk~~~Gi~V~~V~pgSpA~~AGLq~GD~Il~VNG~~V~~~sh~dvv~~Lk~s~~~vvll 88 (309)
+|||.+..... .+++|..|.+++||+.+||++||+|++|||.++.+.++.++..+++...+..+.+
T Consensus 2 ~~G~~~~~~~~-~~~~V~~v~~~s~a~~~gl~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l 67 (70)
T cd00136 2 GLGFSIRGGTE-GGVVVLSVEPGSPAERAGLQAGDVILAVNGTDVKNLTLEDVAELLKKEVGEKVTL 67 (70)
T ss_pred CccEEEecCCC-CCEEEEEeCCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHhhCCCCeEEE
Confidence 68999887753 4899999999999999999999999999999997777799999998876444333
No 8
>smart00228 PDZ Domain present in PSD-95, Dlg, and ZO-1/2. Also called DHR (Dlg homologous region) or GLGF (relatively well conserved tetrapeptide in these domains). Some PDZs have been shown to bind C-terminal polypeptides; others appear to bind internal (non-C-terminal) polypeptides. Different PDZs possess different binding specificities.
Probab=98.94 E-value=2.4e-08 Score=75.62 Aligned_cols=80 Identities=38% Similarity=0.495 Sum_probs=64.3
Q ss_pred EEEEEeeCCCCcceeEEEeccCCC-CCeEEEEeCCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCCeEEE
Q psy10428 10 RLCHILKWTDFDGYGFNLHGEKGK-TGQYIGKVDEGSPAEAAGLKEGDHIIEVNSVNICNENHNQVVQRIKAVPDETKLL 88 (309)
Q Consensus 10 R~v~L~K~~~~~G~GFsl~ggk~~-~Gi~V~~V~pgSpA~~AGLq~GD~Il~VNG~~V~~~sh~dvv~~Lk~s~~~vvll 88 (309)
..+.+.+.. ..|||.+...... .+++|..|.++++|+++||++||+|++|||..+.+.++.++...+...+..+ .+
T Consensus 3 ~~~~~~~~~--~~~G~~~~~~~~~~~~~~i~~v~~~s~a~~~gl~~GD~I~~In~~~v~~~~~~~~~~~~~~~~~~~-~l 79 (85)
T smart00228 3 RLVELEKGG--GGLGFSLVGGKDEGGGVVVSSVVPGSPAAKAGLKVGDVILEVNGTSVEGLTHLEAVDLLKKAGGKV-TL 79 (85)
T ss_pred EEEEEEECC--CcccEEEECCCCCCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeE-EE
Confidence 456777775 7899998865432 5899999999999999999999999999999998888888888887765433 34
Q ss_pred EEEe
Q psy10428 89 VVDV 92 (309)
Q Consensus 89 vv~r 92 (309)
.+.+
T Consensus 80 ~i~r 83 (85)
T smart00228 80 TVLR 83 (85)
T ss_pred EEEe
Confidence 4444
No 9
>KOG3209|consensus
Probab=98.90 E-value=3.2e-09 Score=109.11 Aligned_cols=82 Identities=22% Similarity=0.445 Sum_probs=71.9
Q ss_pred eEEEEEeeCCCCcceeEEEeccCC-CCCeEEEEeCCCCHHHHcC-CCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCCeE
Q psy10428 9 VRLCHILKWTDFDGYGFNLHGEKG-KTGQYIGKVDEGSPAEAAG-LKEGDHIIEVNSVNICNENHNQVVQRIKAVPDETK 86 (309)
Q Consensus 9 pR~v~L~K~~~~~G~GFsl~ggk~-~~Gi~V~~V~pgSpA~~AG-Lq~GD~Il~VNG~~V~~~sh~dvv~~Lk~s~~~vv 86 (309)
--.|.|.|+. .||||+|.||+. .+++||..+.+++||.+.| +++||+|++|||....+++|..++++|++.+..+
T Consensus 899 ~~~VelErG~--kGFGFSiRGGreynM~LfVLRlAeDGPA~rdGrm~VGDqi~eINGesTkgmtH~rAIelIk~gg~~v- 975 (984)
T KOG3209|consen 899 LYTVELERGA--KGFGFSIRGGREYNMDLFVLRLAEDGPAIRDGRMRVGDQITEINGESTKGMTHDRAIELIKQGGRRV- 975 (984)
T ss_pred eeEEEeeccc--cccceEeecccccccceEEEEeccCCCccccCceeecceEEEecCcccCCCcHHHHHHHHHhCCeEE-
Confidence 3578999998 999999999974 4789999999999999999 9999999999999999999999999999876544
Q ss_pred EEEEEeC
Q psy10428 87 LLVVDVA 93 (309)
Q Consensus 87 llvv~r~ 93 (309)
++++++.
T Consensus 976 ll~Lr~g 982 (984)
T KOG3209|consen 976 LLLLRRG 982 (984)
T ss_pred EEEeccC
Confidence 5555543
No 10
>cd00988 PDZ_CTP_protease PDZ domain of C-terminal processing-, tail-specific-, and tricorn proteases, which function in posttranslational protein processing, maturation, and disassembly or degradation, in Bacteria, Archaea, and plant chloroplasts. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=98.80 E-value=8.7e-08 Score=73.40 Aligned_cols=71 Identities=27% Similarity=0.407 Sum_probs=57.6
Q ss_pred cceeEEEeccCCCCCeEEEEeCCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCCeEEEEEEeC
Q psy10428 21 DGYGFNLHGEKGKTGQYIGKVDEGSPAEAAGLKEGDHIIEVNSVNICNENHNQVVQRIKAVPDETKLLVVDVA 93 (309)
Q Consensus 21 ~G~GFsl~ggk~~~Gi~V~~V~pgSpA~~AGLq~GD~Il~VNG~~V~~~sh~dvv~~Lk~s~~~vvllvv~r~ 93 (309)
.++||.+... ..+++|..|.+++||+++||++||+|++|||..+.+.++.++...+....+..+.+.+.+.
T Consensus 2 ~~lG~~~~~~--~~~~~V~~v~~~s~a~~~gl~~GD~I~~vng~~i~~~~~~~~~~~l~~~~~~~i~l~v~r~ 72 (85)
T cd00988 2 GGIGLELKYD--DGGLVITSVLPGSPAAKAGIKAGDIIVAIDGEPVDGLSLEDVVKLLRGKAGTKVRLTLKRG 72 (85)
T ss_pred eEEEEEEEEc--CCeEEEEEecCCCCHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHhcCCCCCEEEEEEEcC
Confidence 5788888654 3579999999999999999999999999999999666568998888765555555666665
No 11
>cd00989 PDZ_metalloprotease PDZ domain of bacterial and plant zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=98.75 E-value=2e-07 Score=70.27 Aligned_cols=69 Identities=35% Similarity=0.549 Sum_probs=54.9
Q ss_pred eeEEEeccCCCCCeEEEEeCCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCCeEEEEEEeCCe
Q psy10428 23 YGFNLHGEKGKTGQYIGKVDEGSPAEAAGLKEGDHIIEVNSVNICNENHNQVVQRIKAVPDETKLLVVDVASE 95 (309)
Q Consensus 23 ~GFsl~ggk~~~Gi~V~~V~pgSpA~~AGLq~GD~Il~VNG~~V~~~sh~dvv~~Lk~s~~~vvllvv~r~~~ 95 (309)
+||.+.. ...+++|..|.++++|+++||++||+|++|||..+ .+|.++...+....+....+.+.|++.
T Consensus 3 ~~~~~g~--~~~~~~V~~v~~~s~a~~~gl~~GD~I~~ing~~i--~~~~~~~~~l~~~~~~~~~l~v~r~~~ 71 (79)
T cd00989 3 LGFVPGG--PPIEPVIGEVVPGSPAAKAGLKAGDRILAINGQKI--KSWEDLVDAVQENPGKPLTLTVERNGE 71 (79)
T ss_pred eeEeccC--CccCcEEEeECCCCHHHHcCCCCCCEEEEECCEEC--CCHHHHHHHHHHCCCceEEEEEEECCE
Confidence 5555443 33468999999999999999999999999999999 789999988877645555566666654
No 12
>KOG1892|consensus
Probab=98.73 E-value=5e-08 Score=102.97 Aligned_cols=83 Identities=24% Similarity=0.447 Sum_probs=71.1
Q ss_pred CCceEEEEEeeCCCCcceeEEEeccCC----CCCeEEEEeCCCCHHHHcC-CCCCCEEEEECCEEcCCCCHHHHHHHHHh
Q psy10428 6 TPVVRLCHILKWTDFDGYGFNLHGEKG----KTGQYIGKVDEGSPAEAAG-LKEGDHIIEVNSVNICNENHNQVVQRIKA 80 (309)
Q Consensus 6 ~~~pR~v~L~K~~~~~G~GFsl~ggk~----~~Gi~V~~V~pgSpA~~AG-Lq~GD~Il~VNG~~V~~~sh~dvv~~Lk~ 80 (309)
.++..+|.|+|. .|+|++|+..++ +.||||.+|.+|++|+..| |+.||+++.|||..+.+.+.+.+..+|..
T Consensus 931 ~pei~~vtL~Kn---nGmGLSIVAAkGaGq~klGIYvKsVV~GgaAd~DGRL~aGDQLLsVdG~SLiGisQErAA~lmtr 1007 (1629)
T KOG1892|consen 931 EPEIITVTLKKN---NGMGLSIVAAKGAGQRKLGIYVKSVVEGGAADHDGRLEAGDQLLSVDGHSLIGISQERAARLMTR 1007 (1629)
T ss_pred CCceEEEEEecc---CCceEEEEeeccCCccccceEEEEeccCCccccccccccCceeeeecCcccccccHHHHHHHHhc
Confidence 456778899986 699999876553 5799999999999999999 99999999999999999999999999999
Q ss_pred CCCCeEEEEEE
Q psy10428 81 VPDETKLLVVD 91 (309)
Q Consensus 81 s~~~vvllvv~ 91 (309)
.+..|.+-|..
T Consensus 1008 tg~vV~leVaK 1018 (1629)
T KOG1892|consen 1008 TGNVVHLEVAK 1018 (1629)
T ss_pred cCCeEEEehhh
Confidence 87666554433
No 13
>KOG3549|consensus
Probab=98.67 E-value=6.3e-08 Score=93.17 Aligned_cols=82 Identities=27% Similarity=0.396 Sum_probs=73.0
Q ss_pred CceEEEEEeeCCCCcceeEEEeccCC-CCCeEEEEeCCCCHHHHcC-CCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCC
Q psy10428 7 PVVRLCHILKWTDFDGYGFNLHGEKG-KTGQYIGKVDEGSPAEAAG-LKEGDHIIEVNSVNICNENHNQVVQRIKAVPDE 84 (309)
Q Consensus 7 ~~pR~v~L~K~~~~~G~GFsl~ggk~-~~Gi~V~~V~pgSpA~~AG-Lq~GD~Il~VNG~~V~~~sh~dvv~~Lk~s~~~ 84 (309)
...|+|.|+|.+. +|||++|.||.. ..+++|+.|...-.|+..| |-+||-|++|||..|..+.|++++++|+++++.
T Consensus 53 s~eRtVtirRQ~v-GGlGLSIKGGaEHn~PvviSkI~kdQaAd~tG~LFvGDAilqvNGi~v~~c~HeevV~iLRNAGde 131 (505)
T KOG3549|consen 53 SKERTVTIRRQKV-GGLGLSIKGGAEHNLPVVISKIYKDQAADITGQLFVGDAILQVNGIYVTACPHEEVVNILRNAGDE 131 (505)
T ss_pred CCceeEEEEeeec-CcceeeeccccccCccEEeehhhhhhhhhhcCceEeeeeeEEeccEEeecCChHHHHHHHHhcCCE
Confidence 4569999998863 899999999863 5789999999999999999 999999999999999999999999999999887
Q ss_pred eEEEE
Q psy10428 85 TKLLV 89 (309)
Q Consensus 85 vvllv 89 (309)
+.+.+
T Consensus 132 VtlTV 136 (505)
T KOG3549|consen 132 VTLTV 136 (505)
T ss_pred EEEEe
Confidence 75543
No 14
>cd00991 PDZ_archaeal_metalloprotease PDZ domain of archaeal zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=98.58 E-value=5.1e-07 Score=69.20 Aligned_cols=61 Identities=31% Similarity=0.390 Sum_probs=51.4
Q ss_pred CCeEEEEeCCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHhC-CCCeEEEEEEeCCee
Q psy10428 34 TGQYIGKVDEGSPAEAAGLKEGDHIIEVNSVNICNENHNQVVQRIKAV-PDETKLLVVDVASEE 96 (309)
Q Consensus 34 ~Gi~V~~V~pgSpA~~AGLq~GD~Il~VNG~~V~~~sh~dvv~~Lk~s-~~~vvllvv~r~~~~ 96 (309)
.|++|..|.++|||+++||++||+|++|||..+ .+|.++...+... .+..+.+.+.|++..
T Consensus 10 ~Gv~V~~V~~~spa~~aGL~~GDiI~~Ing~~v--~~~~d~~~~l~~~~~g~~v~l~v~r~g~~ 71 (79)
T cd00991 10 AGVVIVGVIVGSPAENAVLHTGDVIYSINGTPI--TTLEDFMEALKPTKPGEVITVTVLPSTTK 71 (79)
T ss_pred CcEEEEEECCCChHHhcCCCCCCEEEEECCEEc--CCHHHHHHHHhcCCCCCEEEEEEEECCEE
Confidence 479999999999999999999999999999999 7999999998765 345556666666543
No 15
>KOG3553|consensus
Probab=98.53 E-value=1.3e-07 Score=76.55 Aligned_cols=59 Identities=41% Similarity=0.675 Sum_probs=53.8
Q ss_pred eeEEEeccCCC-----------CCeEEEEeCCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHhC
Q psy10428 23 YGFNLHGEKGK-----------TGQYIGKVDEGSPAEAAGLKEGDHIIEVNSVNICNENHNQVVQRIKAV 81 (309)
Q Consensus 23 ~GFsl~ggk~~-----------~Gi~V~~V~pgSpA~~AGLq~GD~Il~VNG~~V~~~sh~dvv~~Lk~s 81 (309)
+||.|.||-++ .|+||..|.+||||+.|||+.+|.|++|||-++.-.+|+.++..|++.
T Consensus 37 ~GFkIGGGIDQDp~k~Pf~ytD~GiYvT~V~eGsPA~~AGLrihDKIlQvNG~DfTMvTHd~Avk~i~k~ 106 (124)
T KOG3553|consen 37 LGFKIGGGIDQDPSKNPFSYTDKGIYVTRVSEGSPAEIAGLRIHDKILQVNGWDFTMVTHDQAVKRITKE 106 (124)
T ss_pred EEEEeccccCCCcccCCCCcCCccEEEEEeccCChhhhhcceecceEEEecCceeEEEEhHHHHHHhhHh
Confidence 78999988642 589999999999999999999999999999999889999999999874
No 16
>cd00990 PDZ_glycyl_aminopeptidase PDZ domain associated with archaeal and bacterial M61 glycyl-aminopeptidases. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand is presumed to form the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=98.47 E-value=2.2e-06 Score=64.86 Aligned_cols=69 Identities=23% Similarity=0.307 Sum_probs=49.4
Q ss_pred eeEEEeccCCCCCeEEEEeCCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCCeEEEEEEeCCeee
Q psy10428 23 YGFNLHGEKGKTGQYIGKVDEGSPAEAAGLKEGDHIIEVNSVNICNENHNQVVQRIKAVPDETKLLVVDVASEEY 97 (309)
Q Consensus 23 ~GFsl~ggk~~~Gi~V~~V~pgSpA~~AGLq~GD~Il~VNG~~V~~~sh~dvv~~Lk~s~~~vvllvv~r~~~~~ 97 (309)
+|+.+... ..+++|..|.++|+|+.+||++||+|++|||..+ .+|.+++..+ ..+..+.+.+.+++...
T Consensus 3 ~G~~~~~~--~~~~~V~~V~~~s~a~~aGl~~GD~I~~Ing~~v--~~~~~~l~~~--~~~~~v~l~v~r~g~~~ 71 (80)
T cd00990 3 LGLTLDKE--EGLGKVTFVRDDSPADKAGLVAGDELVAVNGWRV--DALQDRLKEY--QAGDPVELTVFRDDRLI 71 (80)
T ss_pred ccEEEEcc--CCcEEEEEECCCChHHHhCCCCCCEEEEECCEEh--HHHHHHHHhc--CCCCEEEEEEEECCEEE
Confidence 46655432 3469999999999999999999999999999999 3455544333 23445556666765443
No 17
>cd00986 PDZ_LON_protease PDZ domain of ATP-dependent LON serine proteases. Most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this bacterial subfamily of protease-associated PDZ domains a C-terminal beta-strand is thought to form the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=98.42 E-value=3.4e-06 Score=64.22 Aligned_cols=60 Identities=33% Similarity=0.521 Sum_probs=49.6
Q ss_pred CeEEEEeCCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHh-CCCCeEEEEEEeCCeee
Q psy10428 35 GQYIGKVDEGSPAEAAGLKEGDHIIEVNSVNICNENHNQVVQRIKA-VPDETKLLVVDVASEEY 97 (309)
Q Consensus 35 Gi~V~~V~pgSpA~~AGLq~GD~Il~VNG~~V~~~sh~dvv~~Lk~-s~~~vvllvv~r~~~~~ 97 (309)
|++|..|.++|+|+. ||++||+|++|||..+ .+|+++..++.. ..+..+.+.+.|++...
T Consensus 9 Gv~V~~V~~~s~A~~-gL~~GD~I~~Ing~~v--~~~~~~~~~l~~~~~~~~v~l~v~r~g~~~ 69 (79)
T cd00986 9 GVYVTSVVEGMPAAG-KLKAGDHIIAVDGKPF--KEAEELIDYIQSKKEGDTVKLKVKREEKEL 69 (79)
T ss_pred CEEEEEECCCCchhh-CCCCCCEEEEECCEEC--CCHHHHHHHHHhCCCCCEEEEEEEECCEEE
Confidence 789999999999997 7999999999999999 789999999875 34455566677765543
No 18
>cd00987 PDZ_serine_protease PDZ domain of tryspin-like serine proteases, such as DegP/HtrA, which are oligomeric proteins involved in heat-shock response, chaperone function, and apoptosis. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=98.40 E-value=3.1e-06 Score=65.05 Aligned_cols=60 Identities=30% Similarity=0.463 Sum_probs=50.1
Q ss_pred CCeEEEEeCCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCC-CCeEEEEEEeCCe
Q psy10428 34 TGQYIGKVDEGSPAEAAGLKEGDHIIEVNSVNICNENHNQVVQRIKAVP-DETKLLVVDVASE 95 (309)
Q Consensus 34 ~Gi~V~~V~pgSpA~~AGLq~GD~Il~VNG~~V~~~sh~dvv~~Lk~s~-~~vvllvv~r~~~ 95 (309)
.|++|..|.++++|+++||++||+|++|||..+ .++.++..++.... +..+.+.+.|.+.
T Consensus 24 ~g~~V~~v~~~s~a~~~gl~~GD~I~~Ing~~i--~~~~~~~~~l~~~~~~~~i~l~v~r~g~ 84 (90)
T cd00987 24 KGVLVASVDPGSPAAKAGLKPGDVILAVNGKPV--KSVADLRRALAELKPGDKVTLTVLRGGK 84 (90)
T ss_pred CEEEEEEECCCCHHHHcCCCcCCEEEEECCEEC--CCHHHHHHHHHhcCCCCEEEEEEEECCE
Confidence 479999999999999999999999999999999 78889988887653 4455566666654
No 19
>PLN00049 carboxyl-terminal processing protease; Provisional
Probab=98.38 E-value=3.9e-06 Score=82.83 Aligned_cols=77 Identities=19% Similarity=0.343 Sum_probs=62.1
Q ss_pred CCcceeEEEeccCCC----CCeEEEEeCCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCCeEEEEEEeCC
Q psy10428 19 DFDGYGFNLHGEKGK----TGQYIGKVDEGSPAEAAGLKEGDHIIEVNSVNICNENHNQVVQRIKAVPDETKLLVVDVAS 94 (309)
Q Consensus 19 ~~~G~GFsl~ggk~~----~Gi~V~~V~pgSpA~~AGLq~GD~Il~VNG~~V~~~sh~dvv~~Lk~s~~~vvllvv~r~~ 94 (309)
.+.|+|+.+...... .+++|..|.++|||+++||+.||+|++|||.+|.+.++.++..+++...+..+.+.+.+.+
T Consensus 83 ~~~GiG~~~~~~~~~~~~~~g~~V~~V~~~SPA~~aGl~~GD~Iv~InG~~v~~~~~~~~~~~l~g~~g~~v~ltv~r~g 162 (389)
T PLN00049 83 AVTGVGLEVGYPTGSDGPPAGLVVVAPAPGGPAARAGIRPGDVILAIDGTSTEGLSLYEAADRLQGPEGSSVELTLRRGP 162 (389)
T ss_pred CceEEEEEEEEccCCCCccCcEEEEEeCCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHhcCCCCEEEEEEEECC
Confidence 457888887643221 3799999999999999999999999999999998888889888887665666667777765
Q ss_pred e
Q psy10428 95 E 95 (309)
Q Consensus 95 ~ 95 (309)
.
T Consensus 163 ~ 163 (389)
T PLN00049 163 E 163 (389)
T ss_pred E
Confidence 4
No 20
>KOG3552|consensus
Probab=98.35 E-value=4e-07 Score=96.10 Aligned_cols=79 Identities=22% Similarity=0.346 Sum_probs=67.6
Q ss_pred CCceEEEEEeeCCCCcceeEEEeccCCCCCeEEEEeCCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCCe
Q psy10428 6 TPVVRLCHILKWTDFDGYGFNLHGEKGKTGQYIGKVDEGSPAEAAGLKEGDHIIEVNSVNICNENHNQVVQRIKAVPDET 85 (309)
Q Consensus 6 ~~~pR~v~L~K~~~~~G~GFsl~ggk~~~Gi~V~~V~pgSpA~~AGLq~GD~Il~VNG~~V~~~sh~dvv~~Lk~s~~~v 85 (309)
|. ||.|.+++.. .|||-++.| .+++|..|.+|||+..- |++||+|+.|||.+|.+..|+.++++++.|...+
T Consensus 54 ~~-pr~vq~~r~~---~lGFgfvag---rPviVr~VT~GGps~GK-L~PGDQIl~vN~Epv~daprervIdlvRace~sv 125 (1298)
T KOG3552|consen 54 WE-PRQVQLQRNA---SLGFGFVAG---RPVIVRFVTEGGPSIGK-LQPGDQILAVNGEPVKDAPRERVIDLVRACESSV 125 (1298)
T ss_pred Cc-chhhhhhccc---cccceeecC---CceEEEEecCCCCcccc-ccCCCeEEEecCcccccccHHHHHHHHHHHhhhc
Confidence 54 9999999985 455555665 48999999999997633 9999999999999999999999999999998888
Q ss_pred EEEEEEe
Q psy10428 86 KLLVVDV 92 (309)
Q Consensus 86 vllvv~r 92 (309)
.++|++.
T Consensus 126 ~ltV~qP 132 (1298)
T KOG3552|consen 126 NLTVCQP 132 (1298)
T ss_pred ceEEecc
Confidence 7777774
No 21
>TIGR00225 prc C-terminal peptidase (prc). A C-terminal peptidase with different substrates in different species including processing of D1 protein of the photosystem II reaction center in higher plants and cleavage of a peptide of 11 residues from the precursor form of penicillin-binding protein in E.coli E.coli and H influenza have the most distal branch of the tree and their proteins have an N-terminal 200 amino acids that show no homology to other proteins in the database.
Probab=98.26 E-value=6.8e-06 Score=79.29 Aligned_cols=74 Identities=28% Similarity=0.388 Sum_probs=58.5
Q ss_pred CcceeEEEeccCCCCCeEEEEeCCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCCeEEEEEEeCCe
Q psy10428 20 FDGYGFNLHGEKGKTGQYIGKVDEGSPAEAAGLKEGDHIIEVNSVNICNENHNQVVQRIKAVPDETKLLVVDVASE 95 (309)
Q Consensus 20 ~~G~GFsl~ggk~~~Gi~V~~V~pgSpA~~AGLq~GD~Il~VNG~~V~~~sh~dvv~~Lk~s~~~vvllvv~r~~~ 95 (309)
..++||.+... ..+++|..|.++|||+++||+.||+|++|||.++.+.+..++...+....+..+.+.+.|.+.
T Consensus 50 ~~~lG~~~~~~--~~~~~V~~V~~~spA~~aGL~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~R~g~ 123 (334)
T TIGR00225 50 LEGIGIQVGMD--DGEIVIVSPFEGSPAEKAGIKPGDKIIKINGKSVAGMSLDDAVALIRGKKGTKVSLEILRAGK 123 (334)
T ss_pred eEEEEEEEEEE--CCEEEEEEeCCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHhccCCCCCEEEEEEEeCCC
Confidence 45788887653 237999999999999999999999999999999976666777777766555555666777643
No 22
>KOG3580|consensus
Probab=98.25 E-value=9.9e-07 Score=89.90 Aligned_cols=82 Identities=33% Similarity=0.572 Sum_probs=68.1
Q ss_pred CceEEEEEeeCCCCcceeEEEeccCCCCCeEEEEeCCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCC-CCe
Q psy10428 7 PVVRLCHILKWTDFDGYGFNLHGEKGKTGQYIGKVDEGSPAEAAGLKEGDHIIEVNSVNICNENHNQVVQRIKAVP-DET 85 (309)
Q Consensus 7 ~~pR~v~L~K~~~~~G~GFsl~ggk~~~Gi~V~~V~pgSpA~~AGLq~GD~Il~VNG~~V~~~sh~dvv~~Lk~s~-~~v 85 (309)
+-.|.|...|+ +..|+.|.||. ..||||..|.+|+||++-||+.||+||.||.++..+...++++..|-..+ ++.
T Consensus 406 P~tk~VrF~KG---dSvGLRLAGGN-DVGIFVaGvqegspA~~eGlqEGDQIL~VN~vdF~nl~REeAVlfLL~lPkGEe 481 (1027)
T KOG3580|consen 406 PNTKMVRFKKG---DSVGLRLAGGN-DVGIFVAGVQEGSPAEQEGLQEGDQILKVNTVDFRNLVREEAVLFLLELPKGEE 481 (1027)
T ss_pred CCceeEEeecC---CeeeeEeccCC-ceeEEEeecccCCchhhccccccceeEEeccccchhhhHHHHHHHHhcCCCCcE
Confidence 56678888877 57899999884 56999999999999999999999999999999999999999988876664 444
Q ss_pred EEEEEEe
Q psy10428 86 KLLVVDV 92 (309)
Q Consensus 86 vllvv~r 92 (309)
+.++.++
T Consensus 482 vtilaQ~ 488 (1027)
T KOG3580|consen 482 VTILAQS 488 (1027)
T ss_pred Eeehhhh
Confidence 4444443
No 23
>KOG3606|consensus
Probab=98.20 E-value=3.5e-06 Score=78.97 Aligned_cols=82 Identities=23% Similarity=0.372 Sum_probs=68.2
Q ss_pred EEEEEeeCCCCcceeEEEeccC----------CCCCeEEEEeCCCCHHHHcC-CCCCCEEEEECCEEcCCCCHHHHHHHH
Q psy10428 10 RLCHILKWTDFDGYGFNLHGEK----------GKTGQYIGKVDEGSPAEAAG-LKEGDHIIEVNSVNICNENHNQVVQRI 78 (309)
Q Consensus 10 R~v~L~K~~~~~G~GFsl~ggk----------~~~Gi~V~~V~pgSpA~~AG-Lq~GD~Il~VNG~~V~~~sh~dvv~~L 78 (309)
|.|+|+|-+....+||-|..|. ..+||||+.+.+||.|+..| |.+.|+|++|||+.|.+.+.+++-.+|
T Consensus 160 RRVRL~khG~ekPLGFYIRDG~SVRVtp~GlekvpGIFISRlVpGGLAeSTGLLaVnDEVlEVNGIEVaGKTLDQVTDMM 239 (358)
T KOG3606|consen 160 RRVRLHKHGSEKPLGFYIRDGTSVRVTPHGLEKVPGIFISRLVPGGLAESTGLLAVNDEVLEVNGIEVAGKTLDQVTDMM 239 (358)
T ss_pred hheehhhcCCCCCceEEEecCceEEeccccccccCceEEEeecCCccccccceeeecceeEEEcCEEeccccHHHHHHHH
Confidence 6678888666688999997764 24799999999999999999 889999999999999999999999998
Q ss_pred HhCCCCeEEEEEEe
Q psy10428 79 KAVPDETKLLVVDV 92 (309)
Q Consensus 79 k~s~~~vvllvv~r 92 (309)
.......+ ++|+.
T Consensus 240 vANshNLI-iTVkP 252 (358)
T KOG3606|consen 240 VANSHNLI-ITVKP 252 (358)
T ss_pred hhcccceE-EEecc
Confidence 77655443 34444
No 24
>COG0793 Prc Periplasmic protease [Cell envelope biogenesis, outer membrane]
Probab=98.13 E-value=1.6e-05 Score=79.17 Aligned_cols=74 Identities=30% Similarity=0.450 Sum_probs=64.6
Q ss_pred CCcceeEEEeccCCCCCeEEEEeCCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCCeEEEEEEeC
Q psy10428 19 DFDGYGFNLHGEKGKTGQYIGKVDEGSPAEAAGLKEGDHIIEVNSVNICNENHNQVVQRIKAVPDETKLLVVDVA 93 (309)
Q Consensus 19 ~~~G~GFsl~ggk~~~Gi~V~~V~pgSpA~~AGLq~GD~Il~VNG~~V~~~sh~dvv~~Lk~s~~~vvllvv~r~ 93 (309)
.+.|+|..+..... .++.|.++.+++||+++||++||+|+.|||.++.+.+.++++..|+...+..+.+.+.|.
T Consensus 98 ~~~GiG~~i~~~~~-~~~~V~s~~~~~PA~kagi~~GD~I~~IdG~~~~~~~~~~av~~irG~~Gt~V~L~i~r~ 171 (406)
T COG0793 98 EFGGIGIELQMEDI-GGVKVVSPIDGSPAAKAGIKPGDVIIKIDGKSVGGVSLDEAVKLIRGKPGTKVTLTILRA 171 (406)
T ss_pred cccceeEEEEEecC-CCcEEEecCCCChHHHcCCCCCCEEEEECCEEccCCCHHHHHHHhCCCCCCeEEEEEEEc
Confidence 46788888876532 479999999999999999999999999999999999999999999988887777777775
No 25
>TIGR00054 RIP metalloprotease RseP. A model that detects fragments as well matches a number of members of the PEPTIDASE FAMILY S2C. The region of match appears not to overlap the active site domain.
Probab=98.08 E-value=2.3e-05 Score=78.18 Aligned_cols=64 Identities=30% Similarity=0.407 Sum_probs=55.1
Q ss_pred CCeEEEEeCCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCCeEEEEEEeCCeeeeE
Q psy10428 34 TGQYIGKVDEGSPAEAAGLKEGDHIIEVNSVNICNENHNQVVQRIKAVPDETKLLVVDVASEEYFK 99 (309)
Q Consensus 34 ~Gi~V~~V~pgSpA~~AGLq~GD~Il~VNG~~V~~~sh~dvv~~Lk~s~~~vvllvv~r~~~~~~~ 99 (309)
.+++|..|.++|||+++||++||+|++|||.++ .+|+++...+....+..+.+.+.|++.....
T Consensus 203 ~g~vV~~V~~~SpA~~aGL~~GD~Iv~Vng~~V--~s~~dl~~~l~~~~~~~v~l~v~R~g~~~~~ 266 (420)
T TIGR00054 203 IEPVLSDVTPNSPAEKAGLKEGDYIQSINGEKL--RSWTDFVSAVKENPGKSMDIKVERNGETLSI 266 (420)
T ss_pred cCcEEEEECCCCHHHHcCCCCCCEEEEECCEEC--CCHHHHHHHHHhCCCCceEEEEEECCEEEEE
Confidence 478999999999999999999999999999999 8899999999876666567777887765443
No 26
>PRK10779 zinc metallopeptidase RseP; Provisional
Probab=98.00 E-value=4.1e-05 Score=76.93 Aligned_cols=63 Identities=21% Similarity=0.341 Sum_probs=54.5
Q ss_pred CeEEEEeCCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCCeEEEEEEeCCeeeeE
Q psy10428 35 GQYIGKVDEGSPAEAAGLKEGDHIIEVNSVNICNENHNQVVQRIKAVPDETKLLVVDVASEEYFK 99 (309)
Q Consensus 35 Gi~V~~V~pgSpA~~AGLq~GD~Il~VNG~~V~~~sh~dvv~~Lk~s~~~vvllvv~r~~~~~~~ 99 (309)
+++|..|.++|||+++||++||+|++|||.++ .+|+++...+....+..+.+.+.|++...+.
T Consensus 222 ~~vV~~V~~~SpA~~AGL~~GDvIl~Ing~~V--~s~~dl~~~l~~~~~~~v~l~v~R~g~~~~~ 284 (449)
T PRK10779 222 EPVLAEVQPNSAASKAGLQAGDRIVKVDGQPL--TQWQTFVTLVRDNPGKPLALEIERQGSPLSL 284 (449)
T ss_pred CcEEEeeCCCCHHHHcCCCCCCEEEEECCEEc--CCHHHHHHHHHhCCCCEEEEEEEECCEEEEE
Confidence 57899999999999999999999999999999 8999999999876666667778887765443
No 27
>PRK10139 serine endoprotease; Provisional
Probab=97.98 E-value=3.8e-05 Score=77.43 Aligned_cols=62 Identities=31% Similarity=0.424 Sum_probs=53.6
Q ss_pred CCeEEEEeCCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCCeEEEEEEeCCeeee
Q psy10428 34 TGQYIGKVDEGSPAEAAGLKEGDHIIEVNSVNICNENHNQVVQRIKAVPDETKLLVVDVASEEYF 98 (309)
Q Consensus 34 ~Gi~V~~V~pgSpA~~AGLq~GD~Il~VNG~~V~~~sh~dvv~~Lk~s~~~vvllvv~r~~~~~~ 98 (309)
.|++|..|.++|||+++||++||+|++|||.++ .+|+++..+++... ..+.+.+.|++...+
T Consensus 390 ~Gv~V~~V~~~spA~~aGL~~GD~I~~Ing~~v--~~~~~~~~~l~~~~-~~v~l~v~R~g~~~~ 451 (455)
T PRK10139 390 KGIKIDEVVKGSPAAQAGLQKDDVIIGVNRDRV--NSIAEMRKVLAAKP-AIIALQIVRGNESIY 451 (455)
T ss_pred CceEEEEeCCCChHHHcCCCCCCEEEEECCEEc--CCHHHHHHHHHhCC-CeEEEEEEECCEEEE
Confidence 478999999999999999999999999999999 99999999998765 455677778776544
No 28
>PRK10139 serine endoprotease; Provisional
Probab=97.98 E-value=4.8e-05 Score=76.76 Aligned_cols=64 Identities=22% Similarity=0.289 Sum_probs=53.6
Q ss_pred CCeEEEEeCCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHh-CCCCeEEEEEEeCCeeeeE
Q psy10428 34 TGQYIGKVDEGSPAEAAGLKEGDHIIEVNSVNICNENHNQVVQRIKA-VPDETKLLVVDVASEEYFK 99 (309)
Q Consensus 34 ~Gi~V~~V~pgSpA~~AGLq~GD~Il~VNG~~V~~~sh~dvv~~Lk~-s~~~vvllvv~r~~~~~~~ 99 (309)
.|++|..|.++|||+++||++||+|++|||+.+ .+|.++...+.. ..+..+.+.+.|++.....
T Consensus 290 ~Gv~V~~V~~~SpA~~AGL~~GDvIl~InG~~V--~s~~dl~~~l~~~~~g~~v~l~V~R~G~~~~l 354 (455)
T PRK10139 290 RGAFVSEVLPNSGSAKAGVKAGDIITSLNGKPL--NSFAELRSRIATTEPGTKVKLGLLRNGKPLEV 354 (455)
T ss_pred CceEEEEECCCChHHHCCCCCCCEEEEECCEEC--CCHHHHHHHHHhcCCCCEEEEEEEECCEEEEE
Confidence 489999999999999999999999999999999 899999988866 4455556777777755433
No 29
>TIGR01713 typeII_sec_gspC general secretion pathway protein C. This model represents GspC, protein C of the main terminal branch of the general secretion pathway, also called type II secretion. This system transports folded proteins across the bacterial outer membrane and is widely distributed in Gram-negative pathogens.
Probab=97.98 E-value=7.5e-05 Score=70.17 Aligned_cols=62 Identities=18% Similarity=0.314 Sum_probs=52.9
Q ss_pred CCeEEEEeCCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHhC-CCCeEEEEEEeCCeee
Q psy10428 34 TGQYIGKVDEGSPAEAAGLKEGDHIIEVNSVNICNENHNQVVQRIKAV-PDETKLLVVDVASEEY 97 (309)
Q Consensus 34 ~Gi~V~~V~pgSpA~~AGLq~GD~Il~VNG~~V~~~sh~dvv~~Lk~s-~~~vvllvv~r~~~~~ 97 (309)
.|+.|..+.++++|+++||+.||+|++|||.++ .++.++.+++... .+..+.+.+.|++...
T Consensus 191 ~G~~v~~v~~~s~a~~aGLr~GDvIv~ING~~i--~~~~~~~~~l~~~~~~~~v~l~V~R~G~~~ 253 (259)
T TIGR01713 191 EGYRLNPGKDPSLFYKSGLQDGDIAVALNGLDL--RDPEQAFQALQMLREETNLTLTVERDGQRE 253 (259)
T ss_pred eEEEEEecCCCCHHHHcCCCCCCEEEEECCEEc--CCHHHHHHHHHhcCCCCeEEEEEEECCEEE
Confidence 589999999999999999999999999999999 8899998888764 3445567788877543
No 30
>PRK10942 serine endoprotease; Provisional
Probab=97.94 E-value=6.9e-05 Score=75.95 Aligned_cols=62 Identities=26% Similarity=0.457 Sum_probs=53.9
Q ss_pred CCeEEEEeCCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCCeEEEEEEeCCeeee
Q psy10428 34 TGQYIGKVDEGSPAEAAGLKEGDHIIEVNSVNICNENHNQVVQRIKAVPDETKLLVVDVASEEYF 98 (309)
Q Consensus 34 ~Gi~V~~V~pgSpA~~AGLq~GD~Il~VNG~~V~~~sh~dvv~~Lk~s~~~vvllvv~r~~~~~~ 98 (309)
.|++|..|.++|+|+++||++||+|++|||.+| .+++++..++...+ ..+.+.+.|.+...+
T Consensus 408 ~gvvV~~V~~~S~A~~aGL~~GDvIv~VNg~~V--~s~~dl~~~l~~~~-~~v~l~V~R~g~~~~ 469 (473)
T PRK10942 408 KGVVVDNVKPGTPAAQIGLKKGDVIIGANQQPV--KNIAELRKILDSKP-SVLALNIQRGDSSIY 469 (473)
T ss_pred CCeEEEEeCCCChHHHcCCCCCCEEEEECCEEc--CCHHHHHHHHHhCC-CeEEEEEEECCEEEE
Confidence 479999999999999999999999999999999 88999999998865 555677778776544
No 31
>PRK10898 serine endoprotease; Provisional
Probab=97.94 E-value=8.2e-05 Score=72.67 Aligned_cols=62 Identities=23% Similarity=0.326 Sum_probs=52.3
Q ss_pred CCeEEEEeCCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHh-CCCCeEEEEEEeCCeee
Q psy10428 34 TGQYIGKVDEGSPAEAAGLKEGDHIIEVNSVNICNENHNQVVQRIKA-VPDETKLLVVDVASEEY 97 (309)
Q Consensus 34 ~Gi~V~~V~pgSpA~~AGLq~GD~Il~VNG~~V~~~sh~dvv~~Lk~-s~~~vvllvv~r~~~~~ 97 (309)
.|++|..|.+++||+++||+.||+|++|||.+| .++.++.+.+.. ..+..+.+.+.|++...
T Consensus 279 ~Gv~V~~V~~~spA~~aGL~~GDvI~~Ing~~V--~s~~~l~~~l~~~~~g~~v~l~v~R~g~~~ 341 (353)
T PRK10898 279 QGIVVNEVSPDGPAAKAGIQVNDLIISVNNKPA--ISALETMDQVAEIRPGSVIPVVVMRDDKQL 341 (353)
T ss_pred CeEEEEEECCCChHHHcCCCCCCEEEEECCEEc--CCHHHHHHHHHhcCCCCEEEEEEEECCEEE
Confidence 589999999999999999999999999999999 889998888865 34555567777776544
No 32
>TIGR02038 protease_degS periplasmic serine pepetdase DegS. This family consists of the periplasmic serine protease DegS (HhoB), a shorter paralog of protease DO (HtrA, DegP) and DegQ (HhoA). It is found in E. coli and several other Proteobacteria of the gamma subdivision. It contains a trypsin domain and a single copy of PDZ domain (in contrast to DegP with two copies). A critical role of this DegS is to sense stress in the periplasm and partially degrade an inhibitor of sigma(E).
Probab=97.93 E-value=6.7e-05 Score=73.13 Aligned_cols=62 Identities=23% Similarity=0.362 Sum_probs=52.3
Q ss_pred CCeEEEEeCCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHh-CCCCeEEEEEEeCCeee
Q psy10428 34 TGQYIGKVDEGSPAEAAGLKEGDHIIEVNSVNICNENHNQVVQRIKA-VPDETKLLVVDVASEEY 97 (309)
Q Consensus 34 ~Gi~V~~V~pgSpA~~AGLq~GD~Il~VNG~~V~~~sh~dvv~~Lk~-s~~~vvllvv~r~~~~~ 97 (309)
.|++|..|.+++||+++||++||+|++|||..+ .++.++.+.+.. ..+..+.+.+.|++...
T Consensus 278 ~Gv~V~~V~~~spA~~aGL~~GDvI~~Ing~~V--~s~~dl~~~l~~~~~g~~v~l~v~R~g~~~ 340 (351)
T TIGR02038 278 RGIVITGVDPNGPAARAGILVRDVILKYDGKDV--IGAEELMDRIAETRPGSKVMVTVLRQGKQL 340 (351)
T ss_pred ccceEeecCCCChHHHCCCCCCCEEEEECCEEc--CCHHHHHHHHHhcCCCCEEEEEEEECCEEE
Confidence 489999999999999999999999999999999 889999888875 34555566777776544
No 33
>KOG3542|consensus
Probab=97.93 E-value=1.4e-05 Score=82.73 Aligned_cols=81 Identities=27% Similarity=0.316 Sum_probs=70.7
Q ss_pred CCCCCCceEEEEEeeCCCCcceeEEEeccCC-CCCeEEEEeCCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHh
Q psy10428 2 SEDKTPVVRLCHILKWTDFDGYGFNLHGEKG-KTGQYIGKVDEGSPAEAAGLKEGDHIIEVNSVNICNENHNQVVQRIKA 80 (309)
Q Consensus 2 ~e~~~~~pR~v~L~K~~~~~G~GFsl~ggk~-~~Gi~V~~V~pgSpA~~AGLq~GD~Il~VNG~~V~~~sh~dvv~~Lk~ 80 (309)
.|.....+|.+.|.|......+-|.+.||.. ..|+||..|.+|+.|++.||+.||+|++|||++....+...+.++|+.
T Consensus 529 ACaaKAK~RqviLtk~sre~pl~f~L~GGsEkGfgifV~~V~pgskAa~~GlKRgDqilEVNgQnfenis~~KA~eiLrn 608 (1283)
T KOG3542|consen 529 ACAAKAKPRQVILTKASREDPLMFRLVGGSEKGFGIFVAEVFPGSKAAREGLKRGDQILEVNGQNFENISAKKAEEILRN 608 (1283)
T ss_pred hhhhcccceeEEEecccccCCceeEeccCccccceeEEeeecCCchHHHhhhhhhhhhhhccccchhhhhHHHHHHHhcC
Confidence 3455678899999986555789999998853 469999999999999999999999999999999999999999999987
Q ss_pred CC
Q psy10428 81 VP 82 (309)
Q Consensus 81 s~ 82 (309)
..
T Consensus 609 nt 610 (1283)
T KOG3542|consen 609 NT 610 (1283)
T ss_pred Cc
Confidence 64
No 34
>KOG3605|consensus
Probab=97.92 E-value=7.1e-06 Score=84.35 Aligned_cols=81 Identities=23% Similarity=0.302 Sum_probs=70.2
Q ss_pred CCCCCceEEEEEeeCCCCcceeEEEeccCCCCCeEEEEeCCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCC
Q psy10428 3 EDKTPVVRLCHILKWTDFDGYGFNLHGEKGKTGQYIGKVDEGSPAEAAGLKEGDHIIEVNSVNICNENHNQVVQRIKAVP 82 (309)
Q Consensus 3 e~~~~~pR~v~L~K~~~~~G~GFsl~ggk~~~Gi~V~~V~pgSpA~~AGLq~GD~Il~VNG~~V~~~sh~dvv~~Lk~s~ 82 (309)
...|+.+..|.++|..--..|||++..| +|.++..||.|++.|+++|.+|++|||+.|-...|+.++++|..+-
T Consensus 731 iV~cpPV~~V~I~RPd~kyQLGFSVQNG------iICSLlRGGIAERGGVRVGHRIIEINgQSVVA~pHekIV~lLs~aV 804 (829)
T KOG3605|consen 731 IVSCPPVTTVLIRRPDLRYQLGFSVQNG------IICSLLRGGIAERGGVRVGHRIIEINGQSVVATPHEKIVQLLSNAV 804 (829)
T ss_pred EecCCCceEEEeecccchhhccceeeCc------EeehhhcccchhccCceeeeeEEEECCceEEeccHHHHHHHHHHhh
Confidence 3468888888888876556789999887 7899999999999999999999999999999999999999998887
Q ss_pred CCeEEEE
Q psy10428 83 DETKLLV 89 (309)
Q Consensus 83 ~~vvllv 89 (309)
+++++.+
T Consensus 805 GEIhMKT 811 (829)
T KOG3605|consen 805 GEIHMKT 811 (829)
T ss_pred hhhhhhc
Confidence 7665443
No 35
>TIGR02037 degP_htrA_DO periplasmic serine protease, Do/DeqQ family. This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures.
Probab=97.89 E-value=6.3e-05 Score=74.88 Aligned_cols=62 Identities=26% Similarity=0.366 Sum_probs=53.0
Q ss_pred CCeEEEEeCCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHhC-CCCeEEEEEEeCCeee
Q psy10428 34 TGQYIGKVDEGSPAEAAGLKEGDHIIEVNSVNICNENHNQVVQRIKAV-PDETKLLVVDVASEEY 97 (309)
Q Consensus 34 ~Gi~V~~V~pgSpA~~AGLq~GD~Il~VNG~~V~~~sh~dvv~~Lk~s-~~~vvllvv~r~~~~~ 97 (309)
.|++|..|.++|+|+++||++||+|++|||.++ .++.++.+++... .+..+.+.+.|++...
T Consensus 362 ~Gv~V~~V~~~SpA~~aGL~~GDvI~~Ing~~V--~s~~d~~~~l~~~~~g~~v~l~v~R~g~~~ 424 (428)
T TIGR02037 362 KGVVVTKVVSGSPAARAGLQPGDVILSVNQQPV--SSVAELRKVLDRAKKGGRVALLILRGGATI 424 (428)
T ss_pred CceEEEEeCCCCHHHHcCCCCCCEEEEECCEEc--CCHHHHHHHHHhcCCCCEEEEEEEECCEEE
Confidence 589999999999999999999999999999999 8899999999764 3455566777776544
No 36
>KOG3580|consensus
Probab=97.87 E-value=2.7e-05 Score=79.68 Aligned_cols=84 Identities=19% Similarity=0.269 Sum_probs=70.9
Q ss_pred ceEEEEEeeCCCCcceeEEEeccCCCCCeEEEEeCCCCHHHHcC-CCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCCeE
Q psy10428 8 VVRLCHILKWTDFDGYGFNLHGEKGKTGQYIGKVDEGSPAEAAG-LKEGDHIIEVNSVNICNENHNQVVQRIKAVPDETK 86 (309)
Q Consensus 8 ~pR~v~L~K~~~~~G~GFsl~ggk~~~Gi~V~~V~pgSpA~~AG-Lq~GD~Il~VNG~~V~~~sh~dvv~~Lk~s~~~vv 86 (309)
.|..+.|+|......||+.|.. .|||..|...|.|++.| |+.||+||+|||.-..+++..++..+|.++.+.+.
T Consensus 198 ~p~kv~LvKsR~nEEyGlrLgS-----qIFvKeit~~gLAardgnlqEGDiiLkINGtvteNmSLtDar~LIEkS~GKL~ 272 (1027)
T KOG3580|consen 198 GPIKVLLVKSRANEEYGLRLGS-----QIFVKEITRTGLAARDGNLQEGDIILKINGTVTENMSLTDARKLIEKSRGKLQ 272 (1027)
T ss_pred CcceEEEEeeccchhhcccccc-----hhhhhhhcccchhhccCCcccccEEEEECcEeeccccchhHHHHHHhccCceE
Confidence 3466788887667899998765 49999999999999998 99999999999999999999999999999988887
Q ss_pred EEEEEeCCee
Q psy10428 87 LLVVDVASEE 96 (309)
Q Consensus 87 llvv~r~~~~ 96 (309)
+++++..+..
T Consensus 273 lvVlRD~~qt 282 (1027)
T KOG3580|consen 273 LVVLRDSQQT 282 (1027)
T ss_pred EEEEecCCce
Confidence 6665544433
No 37
>KOG0609|consensus
Probab=97.84 E-value=9.1e-05 Score=75.08 Aligned_cols=85 Identities=21% Similarity=0.377 Sum_probs=73.3
Q ss_pred CceEEEEEeeCCCCcceeEEEeccCCCCCeEEEEeCCCCHHHHcC-CCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCCe
Q psy10428 7 PVVRLCHILKWTDFDGYGFNLHGEKGKTGQYIGKVDEGSPAEAAG-LKEGDHIIEVNSVNICNENHNQVVQRIKAVPDET 85 (309)
Q Consensus 7 ~~pR~v~L~K~~~~~G~GFsl~ggk~~~Gi~V~~V~pgSpA~~AG-Lq~GD~Il~VNG~~V~~~sh~dvv~~Lk~s~~~v 85 (309)
...|.+.++|.- ...+|.++.-.... .++|..|..||.+++.| |.+||.|++|||..+.+....++..+++.+.+.+
T Consensus 121 ~~vriv~i~k~~-~eplG~Tik~~e~~-~~~vARI~~GG~~~r~glL~~GD~i~EvNGi~v~~~~~~e~q~~l~~~~G~i 198 (542)
T KOG0609|consen 121 EAVRIVRIVKNT-GEPLGATIRVEEDT-KVVVARIMHGGMADRQGLLHVGDEILEVNGISVANKSPEELQELLRNSRGSI 198 (542)
T ss_pred ceeEEEEEeecC-CCccceEEEeccCC-ccEEeeeccCCcchhccceeeccchheecCeecccCCHHHHHHHHHhCCCcE
Confidence 457889999872 27899999876544 79999999999999999 9999999999999999999999999999998777
Q ss_pred EEEEEEeC
Q psy10428 86 KLLVVDVA 93 (309)
Q Consensus 86 vllvv~r~ 93 (309)
.+.++...
T Consensus 199 tfkiiP~~ 206 (542)
T KOG0609|consen 199 TFKIIPSY 206 (542)
T ss_pred EEEEcccc
Confidence 77666543
No 38
>TIGR02037 degP_htrA_DO periplasmic serine protease, Do/DeqQ family. This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures.
Probab=97.84 E-value=9.6e-05 Score=73.59 Aligned_cols=62 Identities=34% Similarity=0.473 Sum_probs=51.9
Q ss_pred CCeEEEEeCCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHhC-CCCeEEEEEEeCCeee
Q psy10428 34 TGQYIGKVDEGSPAEAAGLKEGDHIIEVNSVNICNENHNQVVQRIKAV-PDETKLLVVDVASEEY 97 (309)
Q Consensus 34 ~Gi~V~~V~pgSpA~~AGLq~GD~Il~VNG~~V~~~sh~dvv~~Lk~s-~~~vvllvv~r~~~~~ 97 (309)
.|++|..|.++|||+++||++||+|++|||..+ .++.++..++... .+..+.+.+.|++...
T Consensus 257 ~Gv~V~~V~~~spA~~aGL~~GDvI~~Vng~~i--~~~~~~~~~l~~~~~g~~v~l~v~R~g~~~ 319 (428)
T TIGR02037 257 RGALVAQVLPGSPAEKAGLKAGDVILSVNGKPI--SSFADLRRAIGTLKPGKKVTLGILRKGKEK 319 (428)
T ss_pred CceEEEEccCCCChHHcCCCCCCEEEEECCEEc--CCHHHHHHHHHhcCCCCEEEEEEEECCEEE
Confidence 589999999999999999999999999999999 8899998888653 3455566777766544
No 39
>PRK10942 serine endoprotease; Provisional
Probab=97.79 E-value=0.00015 Score=73.48 Aligned_cols=63 Identities=21% Similarity=0.264 Sum_probs=52.5
Q ss_pred CCeEEEEeCCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHhC-CCCeEEEEEEeCCeeee
Q psy10428 34 TGQYIGKVDEGSPAEAAGLKEGDHIIEVNSVNICNENHNQVVQRIKAV-PDETKLLVVDVASEEYF 98 (309)
Q Consensus 34 ~Gi~V~~V~pgSpA~~AGLq~GD~Il~VNG~~V~~~sh~dvv~~Lk~s-~~~vvllvv~r~~~~~~ 98 (309)
.|++|..|.++|||+++||+.||+|++|||..| .+|.++...+... .+..+.+.+.|++....
T Consensus 311 ~GvlV~~V~~~SpA~~AGL~~GDvIl~InG~~V--~s~~dl~~~l~~~~~g~~v~l~v~R~G~~~~ 374 (473)
T PRK10942 311 RGAFVSQVLPNSSAAKAGIKAGDVITSLNGKPI--SSFAALRAQVGTMPVGSKLTLGLLRDGKPVN 374 (473)
T ss_pred CceEEEEECCCChHHHcCCCCCCEEEEECCEEC--CCHHHHHHHHHhcCCCCEEEEEEEECCeEEE
Confidence 589999999999999999999999999999999 8899998888654 34555666677765443
No 40
>PF04495 GRASP55_65: GRASP55/65 PDZ-like domain ; InterPro: IPR007583 GRASP55 (Golgi reassembly stacking protein of 55 kDa) and GRASP65 (a 65 kDa) protein are highly homologous. GRASP55 is a component of the Golgi stacking machinery. GRASP65, an N-ethylmaleimide-sensitive membrane protein required for the stacking of Golgi cisternae in a cell-free system [].; PDB: 3RLE_A 4EDJ_A.
Probab=97.78 E-value=0.0004 Score=59.51 Aligned_cols=99 Identities=22% Similarity=0.265 Sum_probs=62.2
Q ss_pred CCceEEEEEee---CCCCcceeEEEeccC----CCCCeEEEEeCCCCHHHHcCCCC-CCEEEEECCEEcCCCCHHHHHHH
Q psy10428 6 TPVVRLCHILK---WTDFDGYGFNLHGEK----GKTGQYIGKVDEGSPAEAAGLKE-GDHIIEVNSVNICNENHNQVVQR 77 (309)
Q Consensus 6 ~~~pR~v~L~K---~~~~~G~GFsl~ggk----~~~Gi~V~~V~pgSpA~~AGLq~-GD~Il~VNG~~V~~~sh~dvv~~ 77 (309)
....|.+.+.- ++....+|+++.-.. ...+..|..|.++|||++|||++ .|.|+.+++..+. +.+++...
T Consensus 8 ~~~~R~v~i~ps~~w~~~g~LG~sv~~~~~~~~~~~~~~Vl~V~p~SPA~~AGL~p~~DyIig~~~~~l~--~~~~l~~~ 85 (138)
T PF04495_consen 8 GQTTREVSIVPSKKWGGQGLLGISVRFESFEGAEEEGWHVLRVAPNSPAAKAGLEPFFDYIIGIDGGLLD--DEDDLFEL 85 (138)
T ss_dssp TSSEEEEEE---SSSSSSSSS-EEEEEEE-TTGCCCEEEEEEE-TTSHHHHTT--TTTEEEEEETTCE----STCHHHHH
T ss_pred CCeEEEEEEccCcccCCCCCCcEEEEEecccccccceEEEeEecCCCHHHHCCccccccEEEEccceecC--CHHHHHHH
Confidence 34667777743 333466888876443 24578899999999999999998 6999999998884 56788888
Q ss_pred HHhCCCCeEEEEEEeCCeeeeEeeeeecC
Q psy10428 78 IKAVPDETKLLVVDVASEEYFKSNNITIS 106 (309)
Q Consensus 78 Lk~s~~~vvllvv~r~~~~~~~~~~~~i~ 106 (309)
+....+..+.+.|.....+..++..+.+.
T Consensus 86 v~~~~~~~l~L~Vyns~~~~vR~V~i~P~ 114 (138)
T PF04495_consen 86 VEANENKPLQLYVYNSKTDSVREVTITPS 114 (138)
T ss_dssp HHHTTTS-EEEEEEETTTTCEEEEEE---
T ss_pred HHHcCCCcEEEEEEECCCCeEEEEEEEcC
Confidence 88876665555555444444455555443
No 41
>PRK11186 carboxy-terminal protease; Provisional
Probab=97.77 E-value=9.4e-05 Score=77.84 Aligned_cols=72 Identities=25% Similarity=0.318 Sum_probs=58.4
Q ss_pred CCcceeEEEeccCCCCCeEEEEeCCCCHHHHc-CCCCCCEEEEEC--C---EEcCCCCHHHHHHHHHhCCCCeEEEEEEe
Q psy10428 19 DFDGYGFNLHGEKGKTGQYIGKVDEGSPAEAA-GLKEGDHIIEVN--S---VNICNENHNQVVQRIKAVPDETKLLVVDV 92 (309)
Q Consensus 19 ~~~G~GFsl~ggk~~~Gi~V~~V~pgSpA~~A-GLq~GD~Il~VN--G---~~V~~~sh~dvv~~Lk~s~~~vvllvv~r 92 (309)
.+.|.|+.+.... .+++|..|.+||||+++ ||++||+|++|| | .++.+...++++.+|+...+..+.+.+.+
T Consensus 242 ~~~GIGa~l~~~~--~~~~V~~vipGsPA~ka~gLk~GD~IlaVn~~g~~~~dv~g~~~~~vv~lirG~~Gt~V~LtV~r 319 (667)
T PRK11186 242 SLEGIGAVLQMDD--DYTVINSLVAGGPAAKSKKLSVGDKIVGVGQDGKPIVDVIGWRLDDVVALIKGPKGSKVRLEILP 319 (667)
T ss_pred ceeEEEEEEEEeC--CeEEEEEccCCChHHHhCCCCCCCEEEEECCCCCcccccccCCHHHHHHHhcCCCCCEEEEEEEe
Confidence 3567888876542 36899999999999998 899999999999 4 35667788899999988777777777776
No 42
>KOG3651|consensus
Probab=97.74 E-value=0.00012 Score=69.74 Aligned_cols=77 Identities=23% Similarity=0.335 Sum_probs=66.2
Q ss_pred eEEEEEeeCCCCcceeEEEeccCCCC-CeEEEEeCCCCHHHHcC-CCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCCeE
Q psy10428 9 VRLCHILKWTDFDGYGFNLHGEKGKT-GQYIGKVDEGSPAEAAG-LKEGDHIIEVNSVNICNENHNQVVQRIKAVPDETK 86 (309)
Q Consensus 9 pR~v~L~K~~~~~G~GFsl~ggk~~~-Gi~V~~V~pgSpA~~AG-Lq~GD~Il~VNG~~V~~~sh~dvv~~Lk~s~~~vv 86 (309)
+-.|.|.|+. ..-.|++|.||...- -+||..|..++||++.| ++.||.|+.|||+.|.+.+.-++.++|+-+.+.+.
T Consensus 5 ~~~v~ltKD~-~nliGISIGGGapyCPClYiVQvFD~tPAa~dG~i~~GDEi~avNg~svKGktKveVAkmIQ~~~~eV~ 83 (429)
T KOG3651|consen 5 SETVELTKDE-KNLIGISIGGGAPYCPCLYIVQVFDKTPAAKDGRIRCGDEIVAVNGISVKGKTKVEVAKMIQVSLNEVK 83 (429)
T ss_pred cCcEEEeecc-ccceeEEecCCCCcCCeEEEEEeccCCchhccCccccCCeeEEecceeecCccHHHHHHHHHHhccceE
Confidence 3468888885 356799999996553 36899999999999999 99999999999999999999999999988877664
No 43
>TIGR02860 spore_IV_B stage IV sporulation protein B. SpoIVB, the stage IV sporulation protein B of endospore-forming bacteria such as Bacillus subtilis, is a serine proteinase, expressed in the spore (rather than mother cell) compartment, that participates in a proteolytic activation cascade for Sigma-K. It appears to be universal among endospore-forming bacteria and occurs nowhere else.
Probab=97.68 E-value=0.00049 Score=68.39 Aligned_cols=72 Identities=24% Similarity=0.378 Sum_probs=54.6
Q ss_pred cceeEEEeccCCCCCeEEEEe--------CCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCCeEEEEEEe
Q psy10428 21 DGYGFNLHGEKGKTGQYIGKV--------DEGSPAEAAGLKEGDHIIEVNSVNICNENHNQVVQRIKAVPDETKLLVVDV 92 (309)
Q Consensus 21 ~G~GFsl~ggk~~~Gi~V~~V--------~pgSpA~~AGLq~GD~Il~VNG~~V~~~sh~dvv~~Lk~s~~~vvllvv~r 92 (309)
..+|+.+... |++|... ..++||+.+||++||+|++|||.++ .+|+++.+++....+..+.+.+.|
T Consensus 96 ~~iGI~l~t~----GVlVvg~~~v~~~~g~~~SPAa~AGLq~GDiIvsING~~V--~s~~DL~~iL~~~~g~~V~LtV~R 169 (402)
T TIGR02860 96 QSIGVKLNTK----GVLVVGFSDIETEKGKIHSPGEEAGIQIGDRILKINGEKI--KNMDDLANLINKAGGEKLTLTIER 169 (402)
T ss_pred EEEEEEEecC----EEEEEEEEcccccCCCCCCHHHHcCCCCCCEEEEECCEEC--CCHHHHHHHHHhCCCCeEEEEEEE
Confidence 3445544432 6766443 2369999999999999999999999 999999999988776666777788
Q ss_pred CCeeee
Q psy10428 93 ASEEYF 98 (309)
Q Consensus 93 ~~~~~~ 98 (309)
++....
T Consensus 170 ~Ge~~t 175 (402)
T TIGR02860 170 GGKIIE 175 (402)
T ss_pred CCEEEE
Confidence 765443
No 44
>KOG3571|consensus
Probab=97.68 E-value=0.00012 Score=73.74 Aligned_cols=73 Identities=25% Similarity=0.455 Sum_probs=60.9
Q ss_pred ceEEEEEeeCCCCcceeEEEeccC---CCCCeEEEEeCCCCHHHHcC-CCCCCEEEEECCEEcCCCCHHHHHHHHHhC
Q psy10428 8 VVRLCHILKWTDFDGYGFNLHGEK---GKTGQYIGKVDEGSPAEAAG-LKEGDHIIEVNSVNICNENHNQVVQRIKAV 81 (309)
Q Consensus 8 ~pR~v~L~K~~~~~G~GFsl~ggk---~~~Gi~V~~V~pgSpA~~AG-Lq~GD~Il~VNG~~V~~~sh~dvv~~Lk~s 81 (309)
...+|.|.... ..-||++|+|.. +..||||+.|.+||+.+..| |.+||.||+||.+++.+++-++++..|+..
T Consensus 249 nIITV~LnMe~-vnfLGiSivgqsn~rgDggIYVgsImkgGAVA~DGRIe~GDMiLQVNevsFENmSNd~AVrvLREa 325 (626)
T KOG3571|consen 249 NIITVTLNMET-VNFLGISIVGQSNARGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNEVSFENMSNDQAVRVLREA 325 (626)
T ss_pred eEEEEEecccc-cccceeEeecccCcCCCCceEEeeeccCceeeccCccCccceEEEeeecchhhcCchHHHHHHHHH
Confidence 34455555443 356899999843 35689999999999999999 999999999999999999999999999775
No 45
>PRK10779 zinc metallopeptidase RseP; Provisional
Probab=97.64 E-value=0.00023 Score=71.52 Aligned_cols=64 Identities=16% Similarity=0.241 Sum_probs=50.6
Q ss_pred CCeEEEEeCCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHhC-CCCeEEEEEEeCCeeeeE
Q psy10428 34 TGQYIGKVDEGSPAEAAGLKEGDHIIEVNSVNICNENHNQVVQRIKAV-PDETKLLVVDVASEEYFK 99 (309)
Q Consensus 34 ~Gi~V~~V~pgSpA~~AGLq~GD~Il~VNG~~V~~~sh~dvv~~Lk~s-~~~vvllvv~r~~~~~~~ 99 (309)
...+|..|.++|||++|||++||+|++|||+++ .+|+++...+... ++..+.+.+.|++.....
T Consensus 126 ~~~lV~~V~~~SpA~kAGLk~GDvI~~vnG~~V--~~~~~l~~~v~~~~~g~~v~v~v~R~gk~~~~ 190 (449)
T PRK10779 126 VRPVVGEIAPNSIAAQAQIAPGTELKAVDGIET--PDWDAVRLALVSKIGDESTTITVAPFGSDQRR 190 (449)
T ss_pred CCccccccCCCCHHHHcCCCCCCEEEEECCEEc--CCHHHHHHHHHhhccCCceEEEEEeCCccceE
Confidence 345799999999999999999999999999999 8889987776444 344456677777655433
No 46
>TIGR03279 cyano_FeS_chp putative FeS-containing Cyanobacterial-specific oxidoreductase. Members of this protein family are predicted FeS-containing oxidoreductases of unknown function, apparently restricted to and universal across the Cyanobacteria. The high trusted cutoff score for this model, 700 bits, excludes homologs from other lineages. This exclusion seems justified because a significant number of sequence positions are simultaneously unique to and invariant across the Cyanobacteria, suggesting a specialized, conserved function, perhaps related to photosynthesis. A distantly related protein family, TIGR03278, in universal in and restricted to archaeal methanogens, and may be linked to methanogenesis.
Probab=97.47 E-value=0.00047 Score=69.06 Aligned_cols=40 Identities=28% Similarity=0.314 Sum_probs=37.1
Q ss_pred EEEeCCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHH
Q psy10428 38 IGKVDEGSPAEAAGLKEGDHIIEVNSVNICNENHNQVVQRIK 79 (309)
Q Consensus 38 V~~V~pgSpA~~AGLq~GD~Il~VNG~~V~~~sh~dvv~~Lk 79 (309)
|..|.++|+|+++||++||+|++|||..+ .+|.++...+.
T Consensus 2 I~~V~pgSpAe~AGLe~GD~IlsING~~V--~Dw~D~~~~l~ 41 (433)
T TIGR03279 2 ISAVLPGSIAEELGFEPGDALVSINGVAP--RDLIDYQFLCA 41 (433)
T ss_pred cCCcCCCCHHHHcCCCCCCEEEEECCEEC--CCHHHHHHHhc
Confidence 67799999999999999999999999999 89999887774
No 47
>KOG0606|consensus
Probab=97.31 E-value=0.00033 Score=76.15 Aligned_cols=75 Identities=31% Similarity=0.414 Sum_probs=62.1
Q ss_pred EEEeeCCCCcceeEEEeccCC---C-----CCeEEEEeCCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCC
Q psy10428 12 CHILKWTDFDGYGFNLHGEKG---K-----TGQYIGKVDEGSPAEAAGLKEGDHIIEVNSVNICNENHNQVVQRIKAVPD 83 (309)
Q Consensus 12 v~L~K~~~~~G~GFsl~ggk~---~-----~Gi~V~~V~pgSpA~~AGLq~GD~Il~VNG~~V~~~sh~dvv~~Lk~s~~ 83 (309)
+.+++.+ .+|||++..-+. . .-..|+.|.+|+||..+|+++||.|+.|||..|.+..|.+++++|.+.+.
T Consensus 630 I~i~~~~--~~yGft~~airVy~Gd~d~ytvhh~v~sv~egsPA~~agls~~DlIthvnge~v~gl~H~ev~~Lll~~gn 707 (1205)
T KOG0606|consen 630 ITIHFSG--KKYGFTLRAIRVYMGDKDVYTVHHSVGSVEEGSPAFEAGLSAGDLITHVNGEPVHGLVHTEVMELLLKSGN 707 (1205)
T ss_pred eeeeccc--cccCceeeeEEEecCCcccceeeeeeeeecCCCCccccCCCccceeEeccCcccchhhHHHHHHHHHhcCC
Confidence 6677776 899998654332 1 12579999999999999999999999999999999999999999988877
Q ss_pred CeEEE
Q psy10428 84 ETKLL 88 (309)
Q Consensus 84 ~vvll 88 (309)
.+.+-
T Consensus 708 ~v~~~ 712 (1205)
T KOG0606|consen 708 KVTLR 712 (1205)
T ss_pred eeEEE
Confidence 66543
No 48
>TIGR00054 RIP metalloprotease RseP. A model that detects fragments as well matches a number of members of the PEPTIDASE FAMILY S2C. The region of match appears not to overlap the active site domain.
Probab=97.31 E-value=0.00062 Score=67.97 Aligned_cols=59 Identities=31% Similarity=0.442 Sum_probs=48.5
Q ss_pred CCeEEEEeCCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCCeEEEEEEeCCe
Q psy10428 34 TGQYIGKVDEGSPAEAAGLKEGDHIIEVNSVNICNENHNQVVQRIKAVPDETKLLVVDVASE 95 (309)
Q Consensus 34 ~Gi~V~~V~pgSpA~~AGLq~GD~Il~VNG~~V~~~sh~dvv~~Lk~s~~~vvllvv~r~~~ 95 (309)
.+.+|..|.++|||+++||++||+|++|||..+ .++.++.+.+....+.+ .+.+.+++.
T Consensus 128 ~g~~V~~V~~~SpA~~AGL~~GDvI~~vng~~v--~~~~dl~~~ia~~~~~v-~~~I~r~g~ 186 (420)
T TIGR00054 128 VGPVIELLDKNSIALEAGIEPGDEILSVNGNKI--PGFKDVRQQIADIAGEP-MVEILAERE 186 (420)
T ss_pred CCceeeccCCCCHHHHcCCCCCCEEEEECCEEc--CCHHHHHHHHHhhcccc-eEEEEEecC
Confidence 578899999999999999999999999999999 89999988876655444 445555443
No 49
>PF14685 Tricorn_PDZ: Tricorn protease PDZ domain; PDB: 1N6F_D 1N6D_C 1N6E_C 1K32_A.
Probab=96.84 E-value=0.0061 Score=48.41 Aligned_cols=59 Identities=24% Similarity=0.421 Sum_probs=40.6
Q ss_pred CeEEEEeCCC--------CHHHHcC--CCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCCeEEEEEEeCCe
Q psy10428 35 GQYIGKVDEG--------SPAEAAG--LKEGDHIIEVNSVNICNENHNQVVQRIKAVPDETKLLVVDVASE 95 (309)
Q Consensus 35 Gi~V~~V~pg--------SpA~~AG--Lq~GD~Il~VNG~~V~~~sh~dvv~~Lk~s~~~vvllvv~r~~~ 95 (309)
+..|..|..| ||-.+.| +++||.|++|||+++ ..-.+...+|....+..+++.+.+...
T Consensus 13 ~y~I~~I~~gd~~~~~~~sPL~~pGv~v~~GD~I~aInG~~v--~~~~~~~~lL~~~agk~V~Ltv~~~~~ 81 (88)
T PF14685_consen 13 GYRIARIYPGDPWNPNARSPLAQPGVDVREGDYILAINGQPV--TADANPYRLLEGKAGKQVLLTVNRKPG 81 (88)
T ss_dssp EEEEEEE-BS-TTSSS-B-GGGGGS----TT-EEEEETTEE---BTTB-HHHHHHTTTTSEEEEEEE-STT
T ss_pred EEEEEEEeCCCCCCccccCCccCCCCCCCCCCEEEEECCEEC--CCCCCHHHHhcccCCCEEEEEEecCCC
Confidence 5667777665 8888888 779999999999999 555567888888878877888877543
No 50
>KOG3938|consensus
Probab=96.73 E-value=0.0025 Score=60.00 Aligned_cols=74 Identities=24% Similarity=0.448 Sum_probs=64.4
Q ss_pred CCceEEEEEeeCCCCcceeEEEeccCCCCCeEEEEeCCCCHHHHcC-CCCCCEEEEECCEEcCCCCHHHHHHHHHhCC
Q psy10428 6 TPVVRLCHILKWTDFDGYGFNLHGEKGKTGQYIGKVDEGSPAEAAG-LKEGDHIIEVNSVNICNENHNQVVQRIKAVP 82 (309)
Q Consensus 6 ~~~pR~v~L~K~~~~~G~GFsl~ggk~~~Gi~V~~V~pgSpA~~AG-Lq~GD~Il~VNG~~V~~~sh~dvv~~Lk~s~ 82 (309)
.++++.+.++|.. +.||++|... +-...||..|.+||.-.+-- +++||.|-+|||.+|.++.|.+|..+|+...
T Consensus 124 kGq~kEv~v~Kse--dalGlTITDN-G~GyAFIKrIkegsvidri~~i~VGd~IEaiNge~ivG~RHYeVArmLKel~ 198 (334)
T KOG3938|consen 124 KGQAKEVEVVKSE--DALGLTITDN-GAGYAFIKRIKEGSVIDRIEAICVGDHIEAINGESIVGKRHYEVARMLKELP 198 (334)
T ss_pred cCcceeEEEEecc--cccceEEeeC-CcceeeeEeecCCchhhhhhheeHHhHHHhhcCccccchhHHHHHHHHHhcc
Confidence 3678889999987 8999998743 22357999999999999877 9999999999999999999999999998875
No 51
>KOG3129|consensus
Probab=96.71 E-value=0.005 Score=56.18 Aligned_cols=62 Identities=24% Similarity=0.290 Sum_probs=45.6
Q ss_pred CeEEEEeCCCCHHHHcCCCCCCEEEEECCEEcCCCC-HHHHHHHHHhCCCCeEEEEEEeCCee
Q psy10428 35 GQYIGKVDEGSPAEAAGLKEGDHIIEVNSVNICNEN-HNQVVQRIKAVPDETKLLVVDVASEE 96 (309)
Q Consensus 35 Gi~V~~V~pgSpA~~AGLq~GD~Il~VNG~~V~~~s-h~dvv~~Lk~s~~~vvllvv~r~~~~ 96 (309)
-++|..|.++|||+.+||+.||.|+.+..+.-.+.. ...+....+...+..+-+.+.|++..
T Consensus 140 Fa~V~sV~~~SPA~~aGl~~gD~il~fGnV~sgn~~~lq~i~~~v~~~e~~~v~v~v~R~g~~ 202 (231)
T KOG3129|consen 140 FAVVDSVVPGSPADEAGLCVGDEILKFGNVHSGNFLPLQNIAAVVQSNEDQIVSVTVIREGQK 202 (231)
T ss_pred eEEEeecCCCChhhhhCcccCceEEEecccccccchhHHHHHHHHHhccCcceeEEEecCCCE
Confidence 478999999999999999999999999877663332 33444445556666666677776543
No 52
>COG0265 DegQ Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.66 E-value=0.014 Score=56.49 Aligned_cols=63 Identities=27% Similarity=0.338 Sum_probs=52.3
Q ss_pred CCCeEEEEeCCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCC-CCeEEEEEEeCCeee
Q psy10428 33 KTGQYIGKVDEGSPAEAAGLKEGDHIIEVNSVNICNENHNQVVQRIKAVP-DETKLLVVDVASEEY 97 (309)
Q Consensus 33 ~~Gi~V~~V~pgSpA~~AGLq~GD~Il~VNG~~V~~~sh~dvv~~Lk~s~-~~vvllvv~r~~~~~ 97 (309)
..|++|..|.+++||+++|++.||.|+++||..+ .+..++...+.... +..+.+.+.|++...
T Consensus 269 ~~G~~V~~v~~~spa~~agi~~Gdii~~vng~~v--~~~~~l~~~v~~~~~g~~v~~~~~r~g~~~ 332 (347)
T COG0265 269 AAGAVVLGVLPGSPAAKAGIKAGDIITAVNGKPV--ASLSDLVAAVASNRPGDEVALKLLRGGKER 332 (347)
T ss_pred CCceEEEecCCCChHHHcCCCCCCEEEEECCEEc--cCHHHHHHHHhccCCCCEEEEEEEECCEEE
Confidence 3579999999999999999999999999999999 88888888886654 556667777775443
No 53
>KOG3605|consensus
Probab=96.14 E-value=0.0089 Score=62.21 Aligned_cols=74 Identities=19% Similarity=0.240 Sum_probs=56.9
Q ss_pred EEEEEeeCCCCcceeEEEeccCC---CCCeEEEEeCCCCHHHHcC-CCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCC
Q psy10428 10 RLCHILKWTDFDGYGFNLHGEKG---KTGQYIGKVDEGSPAEAAG-LKEGDHIIEVNSVNICNENHNQVVQRIKAVPDE 84 (309)
Q Consensus 10 R~v~L~K~~~~~G~GFsl~ggk~---~~Gi~V~~V~pgSpA~~AG-Lq~GD~Il~VNG~~V~~~sh~dvv~~Lk~s~~~ 84 (309)
|.|+|.|.. .+.||+.|+-.-. -+.++|-....+|||+++| |-.||+|+.|||..+-++........|+...+.
T Consensus 647 KEVvv~K~k-GEiLGVViVESGWGSmLPTVViAnmm~~GpAarsgkLnIGDQiiaING~SLVGLPLstcQs~Ik~~KnQ 724 (829)
T KOG3605|consen 647 KEVVLEKHK-GEILGVVIVESGWGSILPTVVIANMMHGGPAARSGKLNIGDQIMSINGTSLVGLPLSTCQSIIKGLKNQ 724 (829)
T ss_pred ceeeeeccc-CceeeEEEEecCccccchHHHHHhcccCChhhhcCCccccceeEeecCceeccccHHHHHHHHhccccc
Confidence 446666553 3788887754322 2457889999999999999 999999999999999988877777777776543
No 54
>PRK09681 putative type II secretion protein GspC; Provisional
Probab=96.09 E-value=0.034 Score=52.94 Aligned_cols=61 Identities=23% Similarity=0.335 Sum_probs=42.5
Q ss_pred CeEEEEeCCCC---HHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCC-CeEEEEEEeCCeee
Q psy10428 35 GQYIGKVDEGS---PAEAAGLKEGDHIIEVNSVNICNENHNQVVQRIKAVPD-ETKLLVVDVASEEY 97 (309)
Q Consensus 35 Gi~V~~V~pgS---pA~~AGLq~GD~Il~VNG~~V~~~sh~dvv~~Lk~s~~-~vvllvv~r~~~~~ 97 (309)
|+.=..+.||. .-.++||+.||++++|||.++ .+.+++.+++..-.. ....++|+|++...
T Consensus 205 Gl~GYrl~Pgkd~~lF~~~GLq~GDva~sING~dL--~D~~qa~~l~~~L~~~tei~ltVeRdGq~~ 269 (276)
T PRK09681 205 GIVGYAVKPGADRSLFDASGFKEGDIAIALNQQDF--TDPRAMIALMRQLPSMDSIQLTVLRKGARH 269 (276)
T ss_pred CceEEEECCCCcHHHHHHcCCCCCCEEEEeCCeeC--CCHHHHHHHHHHhccCCeEEEEEEECCEEE
Confidence 33334456664 457799999999999999999 566666666655432 33457888887654
No 55
>COG3975 Predicted protease with the C-terminal PDZ domain [General function prediction only]
Probab=95.82 E-value=0.014 Score=59.69 Aligned_cols=41 Identities=34% Similarity=0.502 Sum_probs=34.6
Q ss_pred ceeEEEeccCCCCCeEEEEeCCCCHHHHcCCCCCCEEEEECCE
Q psy10428 22 GYGFNLHGEKGKTGQYIGKVDEGSPAEAAGLKEGDHIIEVNSV 64 (309)
Q Consensus 22 G~GFsl~ggk~~~Gi~V~~V~pgSpA~~AGLq~GD~Il~VNG~ 64 (309)
.+|..+... ..+.+|..|.++|||..|||.+||.|+.|||.
T Consensus 452 ~LGl~v~~~--~g~~~i~~V~~~gPA~~AGl~~Gd~ivai~G~ 492 (558)
T COG3975 452 YLGLKVKSE--GGHEKITFVFPGGPAYKAGLSPGDKIVAINGI 492 (558)
T ss_pred ccceEeccc--CCeeEEEecCCCChhHhccCCCccEEEEEcCc
Confidence 566655433 34689999999999999999999999999999
No 56
>KOG3532|consensus
Probab=95.49 E-value=0.057 Score=56.80 Aligned_cols=68 Identities=21% Similarity=0.361 Sum_probs=54.4
Q ss_pred cceeEEEeccCCCCCeEEEEeCCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCCeEEEEEE
Q psy10428 21 DGYGFNLHGEKGKTGQYIGKVDEGSPAEAAGLKEGDHIIEVNSVNICNENHNQVVQRIKAVPDETKLLVVD 91 (309)
Q Consensus 21 ~G~GFsl~ggk~~~Gi~V~~V~pgSpA~~AGLq~GD~Il~VNG~~V~~~sh~dvv~~Lk~s~~~vvllvv~ 91 (309)
...|+.+....+ ..+.|..|.++++|.++.+.+||++++|||++| .+..++...++...+.+..++.+
T Consensus 386 ~~ig~vf~~~~~-~~v~v~tv~~ns~a~k~~~~~gdvlvai~~~pi--~s~~q~~~~~~s~~~~~~~l~~~ 453 (1051)
T KOG3532|consen 386 SPIGLVFDKNTN-RAVKVCTVEDNSLADKAAFKPGDVLVAINNVPI--RSERQATRFLQSTTGDLTVLVER 453 (1051)
T ss_pred CceeEEEecCCc-eEEEEEEecCCChhhHhcCCCcceEEEecCccc--hhHHHHHHHHHhcccceEEEEee
Confidence 456666654422 357799999999999999999999999999999 88889999998887766555443
No 57
>KOG1320|consensus
Probab=95.23 E-value=0.1 Score=53.14 Aligned_cols=60 Identities=30% Similarity=0.413 Sum_probs=49.3
Q ss_pred CeEEEEeCCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCCeEEEEEEeCCee
Q psy10428 35 GQYIGKVDEGSPAEAAGLKEGDHIIEVNSVNICNENHNQVVQRIKAVPDETKLLVVDVASEE 96 (309)
Q Consensus 35 Gi~V~~V~pgSpA~~AGLq~GD~Il~VNG~~V~~~sh~dvv~~Lk~s~~~vvllvv~r~~~~ 96 (309)
+++|..|.+++++...++..||+|+.|||+.| ....++..++..+...-.+.++.+...+
T Consensus 399 ~v~is~Vlp~~~~~~~~~~~g~~V~~vng~~V--~n~~~l~~~i~~~~~~~~v~vl~~~~~e 458 (473)
T KOG1320|consen 399 LVLVSQVLPGSINGGYGLKPGDQVVKVNGKPV--KNLKHLYELIEECSTEDKVAVLDRRSAE 458 (473)
T ss_pred EEEEEEeccCCCcccccccCCCEEEEECCEEe--echHHHHHHHHhcCcCceEEEEEecCcc
Confidence 58899999999999999999999999999999 7788899999888643334455554433
No 58
>KOG1738|consensus
Probab=95.05 E-value=0.047 Score=56.74 Aligned_cols=73 Identities=19% Similarity=0.341 Sum_probs=60.0
Q ss_pred CCcceeEEEeccCCCCCeEEEEeCCCCHHHHcC-CCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCCeEEEEEEe
Q psy10428 19 DFDGYGFNLHGEKGKTGQYIGKVDEGSPAEAAG-LKEGDHIIEVNSVNICNENHNQVVQRIKAVPDETKLLVVDV 92 (309)
Q Consensus 19 ~~~G~GFsl~ggk~~~Gi~V~~V~pgSpA~~AG-Lq~GD~Il~VNG~~V~~~sh~dvv~~Lk~s~~~vvllvv~r 92 (309)
...|+|+.|...=+ ...+|..+.+++||...+ |..||.|++||+..+.+..+.-++..|+...-.+++.+..+
T Consensus 211 p~eglg~~I~Ssyd-g~h~~s~~~e~Spad~~~kI~dgdEv~qiN~qtvVgwqlk~vV~sL~~~~sgi~l~lkKr 284 (638)
T KOG1738|consen 211 PSEGLGLYIDSSYD-GPHVTSKIFEQSPADYRQKILDGDEVLQINEQTVVGWQLKVVVSSLRETPAGIELTLKKR 284 (638)
T ss_pred cccCCceEEeeecC-CceeccccccCChHHHhhcccCccceeeecccccccchhHhHHhhcccCcccceeeeecc
Confidence 34889998875532 357899999999999999 99999999999999988888888888888876666666555
No 59
>KOG4407|consensus
Probab=95.03 E-value=0.025 Score=62.85 Aligned_cols=57 Identities=32% Similarity=0.432 Sum_probs=39.0
Q ss_pred eEEEEeCCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCCeEEEEEEe
Q psy10428 36 QYIGKVDEGSPAEAAGLKEGDHIIEVNSVNICNENHNQVVQRIKAVPDETKLLVVDV 92 (309)
Q Consensus 36 i~V~~V~pgSpA~~AGLq~GD~Il~VNG~~V~~~sh~dvv~~Lk~s~~~vvllvv~r 92 (309)
+||..|.++++|..+-|+.||+++.||...+.+....+++.++++..-...+.+|..
T Consensus 145 ~~~~eV~~n~~~~~a~LQ~~~~V~~v~~q~~A~i~~s~~~S~~~qt~~~~~~~~~P~ 201 (1973)
T KOG4407|consen 145 IFIKEVQANGPAHYANLQTGDRVLMVNNQPIAGIAYSTIVSMIKQTPAVLTLHVVPK 201 (1973)
T ss_pred hhhhhhccCChhHHHhhhccceeEEeecCcccchhhhhhhhhhccCCCCCCceeccc
Confidence 566677777777777777777777777777777777777777776655444444433
No 60
>COG3031 PulC Type II secretory pathway, component PulC [Intracellular trafficking and secretion]
Probab=94.30 E-value=0.3 Score=45.71 Aligned_cols=73 Identities=18% Similarity=0.357 Sum_probs=48.4
Q ss_pred eEEEEEeeCCCCcceeEEEeccCCCCCeEEEEeCCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCC-CeEE
Q psy10428 9 VRLCHILKWTDFDGYGFNLHGEKGKTGQYIGKVDEGSPAEAAGLKEGDHIIEVNSVNICNENHNQVVQRIKAVPD-ETKL 87 (309)
Q Consensus 9 pR~v~L~K~~~~~G~GFsl~ggk~~~Gi~V~~V~pgSpA~~AGLq~GD~Il~VNG~~V~~~sh~dvv~~Lk~s~~-~vvl 87 (309)
.|...+.|+. .-+||.+..++ .++.-+..||+.||..+++|+.++ .+.+++..+++.... ....
T Consensus 195 Irltpv~r~e--ki~Gyr~~pgk-----------d~slF~~sglq~GDIavaiNnldl--tdp~~m~~llq~l~~m~s~q 259 (275)
T COG3031 195 IRLTPVIRNE--KIEGYRFEPGK-----------DGSLFYKSGLQRGDIAVAINNLDL--TDPEDMFRLLQMLRNMPSLQ 259 (275)
T ss_pred eEeeeEeeCC--ceEEEEecCCC-----------CcchhhhhcCCCcceEEEecCccc--CCHHHHHHHHHhhhcCcceE
Confidence 3444444544 55666665553 456678899999999999999999 777777666655432 2234
Q ss_pred EEEEeCCee
Q psy10428 88 LVVDVASEE 96 (309)
Q Consensus 88 lvv~r~~~~ 96 (309)
+++.|.+.+
T Consensus 260 lTv~R~G~r 268 (275)
T COG3031 260 LTVIRRGKR 268 (275)
T ss_pred EEEEecCcc
Confidence 566666543
No 61
>KOG1421|consensus
Probab=94.18 E-value=0.19 Score=53.06 Aligned_cols=59 Identities=22% Similarity=0.295 Sum_probs=50.6
Q ss_pred eEEEEeCCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCCeEEEEEEeCCeee
Q psy10428 36 QYIGKVDEGSPAEAAGLKEGDHIIEVNSVNICNENHNQVVQRIKAVPDETKLLVVDVASEEY 97 (309)
Q Consensus 36 i~V~~V~pgSpA~~AGLq~GD~Il~VNG~~V~~~sh~dvv~~Lk~s~~~vvllvv~r~~~~~ 97 (309)
.+|..|.++|||+.. |++||.++.||+..+ .+...+.+.|....++...|++.|++.+.
T Consensus 305 LvV~~vL~~gpa~k~-Le~GDillavN~t~l--~df~~l~~iLDegvgk~l~LtI~Rggqel 363 (955)
T KOG1421|consen 305 LVVETVLPEGPAEKK-LEPGDILLAVNSTCL--NDFEALEQILDEGVGKNLELTIQRGGQEL 363 (955)
T ss_pred EEEEEeccCCchhhc-cCCCcEEEEEcceeh--HHHHHHHHHHhhccCceEEEEEEeCCEEE
Confidence 578999999999998 999999999999888 77788888887777777778888877654
No 62
>PF12812 PDZ_1: PDZ-like domain
Probab=93.39 E-value=0.28 Score=38.01 Aligned_cols=47 Identities=30% Similarity=0.403 Sum_probs=40.6
Q ss_pred CeEEEEeCCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCC
Q psy10428 35 GQYIGKVDEGSPAEAAGLKEGDHIIEVNSVNICNENHNQVVQRIKAVPD 83 (309)
Q Consensus 35 Gi~V~~V~pgSpA~~AGLq~GD~Il~VNG~~V~~~sh~dvv~~Lk~s~~ 83 (309)
+.++.....|+++.+.|+..|-+|.+|||+++ .+.+++++.+++.++
T Consensus 31 ~gv~v~~~~g~~~~~~~i~~g~iI~~Vn~kpt--~~Ld~f~~vvk~ipd 77 (78)
T PF12812_consen 31 GGVYVAVSGGSLAFAGGISKGFIITSVNGKPT--PDLDDFIKVVKKIPD 77 (78)
T ss_pred CEEEEEecCCChhhhCCCCCCeEEEeECCcCC--cCHHHHHHHHHhCCC
Confidence 45666778999998888999999999999999 889999999987654
No 63
>COG3480 SdrC Predicted secreted protein containing a PDZ domain [Signal transduction mechanisms]
Probab=90.31 E-value=1 Score=43.84 Aligned_cols=57 Identities=21% Similarity=0.406 Sum_probs=46.8
Q ss_pred CCeEEEEeCCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHhC-CCCeEEEEEEeC
Q psy10428 34 TGQYIGKVDEGSPAEAAGLKEGDHIIEVNSVNICNENHNQVVQRIKAV-PDETKLLVVDVA 93 (309)
Q Consensus 34 ~Gi~V~~V~pgSpA~~AGLq~GD~Il~VNG~~V~~~sh~dvv~~Lk~s-~~~vvllvv~r~ 93 (309)
.|+|+..+..++++..- |..||.|++|||..+ .+.+++...+... .+..+.+.++|.
T Consensus 130 ~gvyv~~v~~~~~~~gk-l~~gD~i~avdg~~f--~s~~e~i~~v~~~k~Gd~VtI~~~r~ 187 (342)
T COG3480 130 AGVYVLSVIDNSPFKGK-LEAGDTIIAVDGEPF--TSSDELIDYVSSKKPGDEVTIDYERH 187 (342)
T ss_pred eeEEEEEccCCcchhce-eccCCeEEeeCCeec--CCHHHHHHHHhccCCCCeEEEEEEec
Confidence 37899999999987543 999999999999999 8889999888665 466667777763
No 64
>COG0750 Predicted membrane-associated Zn-dependent proteases 1 [Cell envelope biogenesis, outer membrane]
Probab=90.15 E-value=1.2 Score=43.09 Aligned_cols=55 Identities=25% Similarity=0.404 Sum_probs=44.7
Q ss_pred eEEEEeCCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCCe---EEEEEEe
Q psy10428 36 QYIGKVDEGSPAEAAGLKEGDHIIEVNSVNICNENHNQVVQRIKAVPDET---KLLVVDV 92 (309)
Q Consensus 36 i~V~~V~pgSpA~~AGLq~GD~Il~VNG~~V~~~sh~dvv~~Lk~s~~~v---vllvv~r 92 (309)
.++..+...++|..+|++.||+|+++|+..+ .++.++...+....+.. ..+.+.+
T Consensus 131 ~~~~~v~~~s~a~~a~l~~Gd~iv~~~~~~i--~~~~~~~~~~~~~~~~~~~~~~i~~~~ 188 (375)
T COG0750 131 PVVGEVAPKSAAALAGLRPGDRIVAVDGEKV--ASWDDVRRLLVAAAGDVFNLLTILVIR 188 (375)
T ss_pred CeeeecCCCCHHHHcCCCCCCEEEeECCEEc--cCHHHHHHHHHhccCCcccceEEEEEe
Confidence 4566799999999999999999999999999 99999888876654444 4455555
No 65
>KOG3834|consensus
Probab=89.50 E-value=1.8 Score=43.60 Aligned_cols=80 Identities=23% Similarity=0.268 Sum_probs=53.7
Q ss_pred CceEEEEEeeCCCCcc---eeEEEeccC----CCCCeEEEEeCCCCHHHHcCCC-CCCEEEEE-CCEEcCCCCHHHHHHH
Q psy10428 7 PVVRLCHILKWTDFDG---YGFNLHGEK----GKTGQYIGKVDEGSPAEAAGLK-EGDHIIEV-NSVNICNENHNQVVQR 77 (309)
Q Consensus 7 ~~pR~v~L~K~~~~~G---~GFsl~ggk----~~~Gi~V~~V~pgSpA~~AGLq-~GD~Il~V-NG~~V~~~sh~dvv~~ 77 (309)
-..|.+.+... +++| ||++|..-. ...-..|.+|.+++||+++||+ -+|.|+-+ +.+ . ...+|+..+
T Consensus 76 ~~~R~v~I~ps-~~wggqllGvsvrFcsf~~A~~~vwHvl~V~p~SPaalAgl~~~~DYivG~~~~~-~--~~~eDl~~l 151 (462)
T KOG3834|consen 76 QEVRIVEIVPS-NNWGGQLLGVSVRFCSFDGAVESVWHVLSVEPNSPAALAGLRPYTDYIVGIWDAV-M--HEEEDLFTL 151 (462)
T ss_pred ceeEEEEeccc-ccccccccceEEEeccCccchhheeeeeecCCCCHHHhcccccccceEecchhhh-c--cchHHHHHH
Confidence 45677776655 4577 787765432 1223458899999999999977 79999887 433 2 456788888
Q ss_pred HHhCCCCeEEEEE
Q psy10428 78 IKAVPDETKLLVV 90 (309)
Q Consensus 78 Lk~s~~~vvllvv 90 (309)
|....+...-+.+
T Consensus 152 Ieshe~kpLklyV 164 (462)
T KOG3834|consen 152 IESHEGKPLKLYV 164 (462)
T ss_pred HHhccCCCcceeE
Confidence 8666554433333
No 66
>PF09007 EBP50_C-term: EBP50, C-terminal; InterPro: IPR015098 This C-terminal domain allows interaction of EBP50 with FERM (four-point one ERM) domains, resulting in the activation of Ezrin-radixin-moesin (ERM), with subsequent cytoskeletal modulation and cellular growth control []. ; PDB: 2D10_G 2KRG_A 2D11_G.
Probab=88.34 E-value=0.086 Score=35.80 Aligned_cols=35 Identities=31% Similarity=0.390 Sum_probs=18.9
Q ss_pred ccccccHHHHHHHHhhcccCCCCc-cchhhhhhhhhhh
Q psy10428 271 LNLNMSAKELRAKLASRKKYDPKK-DYLDIKKKYDIVQ 307 (309)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 307 (309)
|.|+||++|-.++.-+ |.--|+ -+||..||+||.-
T Consensus 4 l~l~~s~a~Akeka~~--kR~~KrAP~MDW~Kk~ElFS 39 (41)
T PF09007_consen 4 LDLSPSAAEAKEKAHQ--KRSKKRAPQMDWSKKNELFS 39 (41)
T ss_dssp --HHHHHHGGGGGTT-------S--S---HHHHHHHHH
T ss_pred cccChhHHHHHHHHHH--HHHhccCCCcchHHHHHhhh
Confidence 8899999987665432 222233 7899999999864
No 67
>KOG3834|consensus
Probab=81.99 E-value=4.2 Score=41.06 Aligned_cols=60 Identities=30% Similarity=0.439 Sum_probs=45.3
Q ss_pred CCeEEEEeCCCCHHHHcCCC-CCCEEEEECCEEcCCCCHHHHHHHHHhCCCCeEEEEEEeCC
Q psy10428 34 TGQYIGKVDEGSPAEAAGLK-EGDHIIEVNSVNICNENHNQVVQRIKAVPDETKLLVVDVAS 94 (309)
Q Consensus 34 ~Gi~V~~V~pgSpA~~AGLq-~GD~Il~VNG~~V~~~sh~dvv~~Lk~s~~~vvllvv~r~~ 94 (309)
.|..|..|..+|+|+++||. --|.|++|||..+. .+-+.+..+|+.....+.+.++....
T Consensus 15 eg~hvlkVqedSpa~~aglepffdFIvSI~g~rL~-~dnd~Lk~llk~~sekVkltv~n~kt 75 (462)
T KOG3834|consen 15 EGYHVLKVQEDSPAHKAGLEPFFDFIVSINGIRLN-KDNDTLKALLKANSEKVKLTVYNSKT 75 (462)
T ss_pred eeEEEEEeecCChHHhcCcchhhhhhheeCccccc-CchHHHHHHHHhcccceEEEEEeccc
Confidence 47889999999999999965 58999999999993 34455666677766666555555443
No 68
>PF14178 YppF: YppF-like protein
Probab=78.10 E-value=2.2 Score=31.60 Aligned_cols=32 Identities=38% Similarity=0.687 Sum_probs=28.1
Q ss_pred ccHHHHHHHHhhcccCCCCc--cchhhhhhhhhh
Q psy10428 275 MSAKELRAKLASRKKYDPKK--DYLDIKKKYDIV 306 (309)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 306 (309)
|...|++.+..++|+|-|-. +-+||-+|.=|-
T Consensus 1 M~l~eLk~~F~~~k~y~p~~~NeLLDFar~~Yi~ 34 (60)
T PF14178_consen 1 MNLHELKQKFMQKKKYEPEDMNELLDFARKLYIQ 34 (60)
T ss_pred CCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHh
Confidence 78899999999999999986 889998886553
No 69
>KOG1421|consensus
Probab=73.83 E-value=7.7 Score=41.53 Aligned_cols=49 Identities=24% Similarity=0.411 Sum_probs=45.1
Q ss_pred CCeEEEEeCCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCCe
Q psy10428 34 TGQYIGKVDEGSPAEAAGLKEGDHIIEVNSVNICNENHNQVVQRIKAVPDET 85 (309)
Q Consensus 34 ~Gi~V~~V~pgSpA~~AGLq~GD~Il~VNG~~V~~~sh~dvv~~Lk~s~~~v 85 (309)
.|+||.....||||.+ +|+....|+.|||..+ .+.++...+++..+...
T Consensus 862 ~gvyvt~rg~gspalq-~l~aa~fitavng~~t--~~lddf~~~~~~ipdns 910 (955)
T KOG1421|consen 862 EGVYVTSRGYGSPALQ-MLRAAHFITAVNGHDT--NTLDDFYHMLLEIPDNS 910 (955)
T ss_pred CceEEeecccCChhHh-hcchheeEEEeccccc--CcHHHHHHHHhhCCCCc
Confidence 5899999999999999 8999999999999999 89999999998877554
No 70
>KOG4371|consensus
Probab=71.85 E-value=4.4 Score=45.03 Aligned_cols=67 Identities=18% Similarity=0.396 Sum_probs=54.8
Q ss_pred cceeEEEeccCCCCCeEEEEeCCCCHHHHcC-CCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCCeEE
Q psy10428 21 DGYGFNLHGEKGKTGQYIGKVDEGSPAEAAG-LKEGDHIIEVNSVNICNENHNQVVQRIKAVPDETKL 87 (309)
Q Consensus 21 ~G~GFsl~ggk~~~Gi~V~~V~pgSpA~~AG-Lq~GD~Il~VNG~~V~~~sh~dvv~~Lk~s~~~vvl 87 (309)
.++|+.+.......|++|+.+...+.|.--| ++.||+++..+|+++.+...-.+.+.++-..+.+++
T Consensus 1257 ~~~~~~~~~~~~s~~~~~~~~~~~~~a~~~~~~r~g~~~~~~~~~~~~~~~p~~~l~~~~~v~~p~~~ 1324 (1332)
T KOG4371|consen 1257 ATLGLSLAKRTMSDGIFIRNIAQDSAASSEGTLRVGDRLVSLDGEPVDGFTPATILEKLKLVQGPVQI 1324 (1332)
T ss_pred ccccccccccCcCCceeeecccccccccccccccccceeeccCCccCCCCChHHHHHHhhhccCchhh
Confidence 7888887766656689999999999888888 999999999999999988888777777655454433
No 71
>KOG0792|consensus
Probab=69.63 E-value=2.7 Score=46.54 Aligned_cols=63 Identities=29% Similarity=0.532 Sum_probs=53.3
Q ss_pred cceeEEEeccCCC------CCeEEEEeC-------------CCCHHHHcC--CCCCCEEEEECCEEcCCCCHHHHHHHHH
Q psy10428 21 DGYGFNLHGEKGK------TGQYIGKVD-------------EGSPAEAAG--LKEGDHIIEVNSVNICNENHNQVVQRIK 79 (309)
Q Consensus 21 ~G~GFsl~ggk~~------~Gi~V~~V~-------------pgSpA~~AG--Lq~GD~Il~VNG~~V~~~sh~dvv~~Lk 79 (309)
+.|||.+.|+... .+..+..+. ++++|...+ +..||+++.|||.++....|+.++.+|+
T Consensus 716 g~~g~~~~g~~dq~~~~~~~p~a~sRv~~~~p~~~~~~~~~p~s~~d~~~P~~~e~dq~~~ingr~~~~~~~~~~vs~ir 795 (1144)
T KOG0792|consen 716 GRFGFNLKGGLDQLQNLLNEPVAVSRVAGPGPLKMNGKLSEPESTADDCTPRLNEGDQVTSINGRDVSESEHDQVVSLIR 795 (1144)
T ss_pred ccccccccchhhhhhccccccHHHHhhcccccchhcccccCCCCCccccccCCCcccceeeecccccccccccchHHHHh
Confidence 6799999988643 456777888 899998888 8899999999999999999999999887
Q ss_pred hCCC
Q psy10428 80 AVPD 83 (309)
Q Consensus 80 ~s~~ 83 (309)
+...
T Consensus 796 s~r~ 799 (1144)
T KOG0792|consen 796 SPRE 799 (1144)
T ss_pred hhhh
Confidence 6543
No 72
>PF11874 DUF3394: Domain of unknown function (DUF3394); InterPro: IPR021814 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 190 amino acids in length. This domain is found associated with PF06808 from PFAM.
Probab=67.52 E-value=9.1 Score=34.46 Aligned_cols=37 Identities=38% Similarity=0.448 Sum_probs=30.7
Q ss_pred eeEEEeccCCCCCeEEEEeCCCCHHHHcCCCCCCEEEEE
Q psy10428 23 YGFNLHGEKGKTGQYIGKVDEGSPAEAAGLKEGDHIIEV 61 (309)
Q Consensus 23 ~GFsl~ggk~~~Gi~V~~V~pgSpA~~AGLq~GD~Il~V 61 (309)
+|+.+.... ..+.|..|..||+|+++|+..|++|++|
T Consensus 113 ~GL~l~~e~--~~~~Vd~v~fgS~A~~~g~d~d~~I~~v 149 (183)
T PF11874_consen 113 AGLTLMEEG--GKVIVDEVEFGSPAEKAGIDFDWEITEV 149 (183)
T ss_pred CCCEEEeeC--CEEEEEecCCCCHHHHcCCCCCcEEEEE
Confidence 577666542 3589999999999999999999999876
No 73
>KOG2921|consensus
Probab=62.38 E-value=11 Score=37.99 Aligned_cols=46 Identities=20% Similarity=0.295 Sum_probs=37.8
Q ss_pred CCeEEEEeCCCCHHHH-cCCCCCCEEEEECCEEcCCCCHHHHHHHHHhC
Q psy10428 34 TGQYIGKVDEGSPAEA-AGLKEGDHIIEVNSVNICNENHNQVVQRIKAV 81 (309)
Q Consensus 34 ~Gi~V~~V~pgSpA~~-AGLq~GD~Il~VNG~~V~~~sh~dvv~~Lk~s 81 (309)
.|+.|..|...||+.. -||.+||+|.++||.+| .+.+|+.+.++.+
T Consensus 220 ~gV~Vtev~~~Spl~gprGL~vgdvitsldgcpV--~~v~dW~ecl~ts 266 (484)
T KOG2921|consen 220 EGVTVTEVPSVSPLFGPRGLSVGDVITSLDGCPV--HKVSDWLECLATS 266 (484)
T ss_pred ceEEEEeccccCCCcCcccCCccceEEecCCccc--CCHHHHHHHHHhh
Confidence 4788888888888654 27999999999999999 7788888888664
No 74
>KOG4371|consensus
Probab=53.52 E-value=13 Score=41.58 Aligned_cols=81 Identities=16% Similarity=0.198 Sum_probs=51.1
Q ss_pred ceEEEEEeeCCCCcceeEEEeccCCCCCeEEEEeCCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCCeEE
Q psy10428 8 VVRLCHILKWTDFDGYGFNLHGEKGKTGQYIGKVDEGSPAEAAGLKEGDHIIEVNSVNICNENHNQVVQRIKAVPDETKL 87 (309)
Q Consensus 8 ~pR~v~L~K~~~~~G~GFsl~ggk~~~Gi~V~~V~pgSpA~~AGLq~GD~Il~VNG~~V~~~sh~dvv~~Lk~s~~~vvl 87 (309)
+...+.+-|.+ ..+|..+...- ..+-|......+.-..-.|+.||.++.+||+-+.+.-|.+++.+++..++.+++
T Consensus 1147 ~~i~~~~~r~~--~~l~~~~a~~~--~~~~~~~~~~~~~~~~pd~~~g~~l~~~n~i~~~~~~~~~~~~~~~~~~~~~~~ 1222 (1332)
T KOG4371|consen 1147 RVIDVELDRNE--GSLGVQIASLS--GRVCIKQLTSEPAISHPDIRVGDVLLYVNGIAVEGKVHQEVVAMLRGGGDRVVL 1222 (1332)
T ss_pred ccccccCCCCC--CCCCceeccCc--cceehhhcccCCCCCCCCcchhhhhhhccceeeechhhHHHHHHHhccCceEEE
Confidence 33334444544 56776654431 123333333333333334999999999999999999999999999888766654
Q ss_pred EEEEeC
Q psy10428 88 LVVDVA 93 (309)
Q Consensus 88 lvv~r~ 93 (309)
- +.|.
T Consensus 1223 ~-~~r~ 1227 (1332)
T KOG4371|consen 1223 G-VQRP 1227 (1332)
T ss_pred E-eecC
Confidence 4 4443
No 75
>PF14178 YppF: YppF-like protein
Probab=28.37 E-value=33 Score=25.48 Aligned_cols=29 Identities=38% Similarity=0.761 Sum_probs=25.4
Q ss_pred ccHHHHHHHHhhhhccCCCc--ccccccccc
Q psy10428 212 MSAKELRAKLASRKKYDPKK--DYLDIKKKY 240 (309)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 240 (309)
|+-.|++++..+.|+|-|-. +.|||-++.
T Consensus 1 M~l~eLk~~F~~~k~y~p~~~NeLLDFar~~ 31 (60)
T PF14178_consen 1 MNLHELKQKFMQKKKYEPEDMNELLDFARKL 31 (60)
T ss_pred CCHHHHHHHHHHHhccCcccHHHHHHHHHHH
Confidence 67789999999999999987 899987764
No 76
>cd04459 Rho_CSD Rho_CSD: Rho protein cold-shock domain (CSD). Rho protein is a transcription termination factor in most bacteria. In bacteria, there are two distinct mechanisms for mRNA transcription termination. In intrinsic termination, RNA polymerase and nascent mRNA are released from DNA template by an mRNA stem loop structure, which resembles the transcription termination mechanism used by eukaryotic pol III. The second mechanism is mediated by Rho factor. Rho factor terminates transcription by using energy from ATP hydrolysis to forcibly dissociate the transcripts from RNA polymerase. Rho protein contains an N-terminal S1-like domain, which binds single-stranded RNA. Rho has a C-terminal ATPase domain which hydrolyzes ATP to provide energy to strip RNA polymerase and mRNA from the DNA template. Rho functions as a homohexamer.
Probab=27.06 E-value=88 Score=23.60 Aligned_cols=36 Identities=28% Similarity=0.537 Sum_probs=23.9
Q ss_pred cceeEEEeccC----CCCCeEEEEeCCCCHHHHcCCCCCCEEEE
Q psy10428 21 DGYGFNLHGEK----GKTGQYIGKVDEGSPAEAAGLKEGDHIIE 60 (309)
Q Consensus 21 ~G~GFsl~ggk----~~~Gi~V~~V~pgSpA~~AGLq~GD~Il~ 60 (309)
+||||.-.... +..-+|| +.+...+-||+.||.|.-
T Consensus 10 ~g~GFLR~~~~~y~~~~~DvyV----s~~~Irr~~LR~GD~V~G 49 (68)
T cd04459 10 DGFGFLRSSGYNYLPGPDDIYV----SPSQIRRFNLRTGDTVVG 49 (68)
T ss_pred CCceEEecCCcCCCCCCCCEEE----CHHHHHHhCCCCCCEEEE
Confidence 58998765432 1223555 446677889999999965
No 77
>PF08031 BBE: Berberine and berberine like ; InterPro: IPR012951 This domain is found in the berberine bridge and berberine bridge-like enzymes, which are involved in the biosynthesis of numerous isoquinoline alkaloids. They catalyse the transformation of the N-methyl group of (S)-reticuline into the C-8 berberine bridge carbon of (S)-scoulerine [].; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 2IPI_A 2Y3S_A 2Y3R_D 2Y08_B 2Y4G_A 3D2H_A 3FW9_A 3FW8_A 3FWA_A 3D2J_A ....
Probab=26.75 E-value=28 Score=24.01 Aligned_cols=16 Identities=31% Similarity=0.470 Sum_probs=10.3
Q ss_pred HHHHHhhcccCCCCcc
Q psy10428 280 LRAKLASRKKYDPKKD 295 (309)
Q Consensus 280 ~~~~~~~~~~~~~~~~ 295 (309)
+....+-|++|||.+.
T Consensus 24 ~~rL~~iK~~yDP~n~ 39 (47)
T PF08031_consen 24 YDRLRAIKRKYDPDNV 39 (47)
T ss_dssp HHHHHHHHHHH-TT-T
T ss_pred HHHHHHHHHHhCccce
Confidence 4455677999999874
No 78
>COG5233 GRH1 Peripheral Golgi membrane protein [Intracellular trafficking and secretion]
Probab=25.90 E-value=45 Score=32.82 Aligned_cols=31 Identities=35% Similarity=0.498 Sum_probs=27.5
Q ss_pred eEEEEeCCCCHHHHcCCCCCCEEEEECCEEc
Q psy10428 36 QYIGKVDEGSPAEAAGLKEGDHIIEVNSVNI 66 (309)
Q Consensus 36 i~V~~V~pgSpA~~AGLq~GD~Il~VNG~~V 66 (309)
+-+..|.+.++|+.+|+-.||.|+-+|+-++
T Consensus 65 l~~lrv~~~~~~e~~~~~~~dyilg~n~Dp~ 95 (417)
T COG5233 65 LEVLRVNPESPAEKAGMVVGDYILGINEDPL 95 (417)
T ss_pred hhheeccccChhHhhccccceeEEeecCCcH
Confidence 3567889999999999999999999998766
No 79
>PF02315 MDH: Methanol dehydrogenase beta subunit; InterPro: IPR003420 Methanol dehydrogenase (MDH) (1.1.99.8 from EC), found in Gram-negative bacteria, is a pyrroloquinoline quinone (PQQ)-containing enzyme which oxidises methanol to formaldehyde. It is located in the periplasmic space and passes electrons derived from the oxidation of methanol to the soluble cytochrome cL []. The enzyme is a tetramer composed of two large alpha subunits and two smaller beta subunits. The alpha subunit binds the PQQ cofactor and contains the active site, while the function of the beta subunit is currently unknown []. The alpha subunit forms an eight-bladed propeller structure, with several novel tryptophan-docking motifs linking the individual blades together. This entry represents the beta subunit of methanol dehydrogenase.; GO: 0004022 alcohol dehydrogenase (NAD) activity, 0015946 methanol oxidation, 0055114 oxidation-reduction process; PDB: 1LRW_B 2D0V_J 2AD6_B 1G72_B 4AAH_D 2AD8_D 2AD7_D 1H4J_D 1H4I_B 1W6S_B ....
Probab=25.16 E-value=25 Score=28.06 Aligned_cols=21 Identities=33% Similarity=0.653 Sum_probs=12.2
Q ss_pred ccCCCCccchhhhhhhhhhhc
Q psy10428 288 KKYDPKKDYLDIKKKYDIVQK 308 (309)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~ 308 (309)
-|||||-+..+|-|--+-|+-
T Consensus 48 SKYDPkHdp~ELnKQ~~si~~ 68 (93)
T PF02315_consen 48 SKYDPKHDPKELNKQQESIKA 68 (93)
T ss_dssp STT-----HHHHTHHHHHHHH
T ss_pred cccCCCCCHHHHHHHHHHHHH
Confidence 489999999999887776653
No 80
>PRK15464 cold shock-like protein CspH; Provisional
Probab=24.25 E-value=1.4e+02 Score=22.44 Aligned_cols=42 Identities=17% Similarity=0.238 Sum_probs=22.9
Q ss_pred EEEeeCCCCcceeEEEeccCCCCCeEEEE--eCCCCHHHHcCCCCCCEEE
Q psy10428 12 CHILKWTDFDGYGFNLHGEKGKTGQYIGK--VDEGSPAEAAGLKEGDHII 59 (309)
Q Consensus 12 v~L~K~~~~~G~GFsl~ggk~~~Gi~V~~--V~pgSpA~~AGLq~GD~Il 59 (309)
|...... .||||..... +..-+||.. +...+ ...|++||.|.
T Consensus 9 Vk~fn~~--KGfGFI~~~~-g~~DvFvH~s~l~~~g---~~~l~~G~~V~ 52 (70)
T PRK15464 9 VKTFDRK--SGKGFIIPSD-GRKEVQVHISAFTPRD---AEVLIPGLRVE 52 (70)
T ss_pred EEEEECC--CCeEEEccCC-CCccEEEEehhehhcC---CCCCCCCCEEE
Confidence 4444444 8999965433 223455443 33221 23488888874
No 81
>smart00213 UBQ Ubiquitin homologues. Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression
Probab=22.84 E-value=62 Score=22.30 Aligned_cols=24 Identities=17% Similarity=0.203 Sum_probs=20.2
Q ss_pred cccccccHHHHHHHHhhcccCCCC
Q psy10428 270 NLNLNMSAKELRAKLASRKKYDPK 293 (309)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~ 293 (309)
.+...+|.++++++|+.+...+|.
T Consensus 15 ~v~~~~tv~~lk~~i~~~~~~~~~ 38 (64)
T smart00213 15 EVKPSDTVSELKEKIAELTGIPVE 38 (64)
T ss_pred EECCCCcHHHHHHHHHHHHCCCHH
Confidence 366788999999999998887764
No 82
>PF11338 DUF3140: Protein of unknown function (DUF3140); InterPro: IPR021487 Some members in this family of proteins are annotated as DNA binding proteins. No function is currently known.
Probab=22.13 E-value=54 Score=26.38 Aligned_cols=15 Identities=33% Similarity=0.448 Sum_probs=13.2
Q ss_pred ccccHHHHHHHHhhc
Q psy10428 273 LNMSAKELRAKLASR 287 (309)
Q Consensus 273 ~~~~~~~~~~~~~~~ 287 (309)
+|||++||++-|...
T Consensus 6 VNMt~~EL~~WL~t~ 20 (92)
T PF11338_consen 6 VNMTPAELEDWLRTD 20 (92)
T ss_pred hCCCHHHHHHHHcCc
Confidence 699999999999754
No 83
>cd01804 midnolin_N Ubiquitin-like domain of midnolin. midnolin_N Midnolin (midbrain nucleolar protein) is expressed in the nucleolus and is thought to regulate genes involved in neurogenesis. Midnolin contains an amino-terminal ubiquitin-like domain.
Probab=20.71 E-value=66 Score=24.27 Aligned_cols=25 Identities=12% Similarity=0.231 Sum_probs=20.3
Q ss_pred ccccccHHHHHHHHhhcccCCCCcc
Q psy10428 271 LNLNMSAKELRAKLASRKKYDPKKD 295 (309)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (309)
+....|++|++++++++.++.|..-
T Consensus 18 v~~~~TV~~LK~~I~~~~~~~~~~q 42 (78)
T cd01804 18 VPPDETVEGLKKRISQRLKVPKERL 42 (78)
T ss_pred ECCcCHHHHHHHHHHHHhCCChHHE
Confidence 4556799999999999999877543
No 84
>PRK10354 RNA chaperone/anti-terminator; Provisional
Probab=20.44 E-value=2.4e+02 Score=20.88 Aligned_cols=35 Identities=20% Similarity=0.550 Sum_probs=19.1
Q ss_pred cceeEEEeccCCCCCeEE--EEeCCCCHHHHcCCCCCCEEE
Q psy10428 21 DGYGFNLHGEKGKTGQYI--GKVDEGSPAEAAGLKEGDHII 59 (309)
Q Consensus 21 ~G~GFsl~ggk~~~Gi~V--~~V~pgSpA~~AGLq~GD~Il 59 (309)
.||||.-... +..-+|| ..+...+ ...|+.||.|.
T Consensus 16 kGfGFI~~~~-g~~dvfvH~s~l~~~g---~~~l~~G~~V~ 52 (70)
T PRK10354 16 KGFGFITPDD-GSKDVFVHFSAIQNDG---YKSLDEGQKVS 52 (70)
T ss_pred CCcEEEecCC-CCccEEEEEeeccccC---CCCCCCCCEEE
Confidence 7999965432 2223554 3343221 23388888875
Done!