Query psy10428
Match_columns 309
No_of_seqs 214 out of 1911
Neff 5.9
Searched_HMMs 29240
Date Fri Aug 16 17:37:22 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10428.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/10428hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2krg_A Na(+)/H(+) exchange reg 99.9 3.5E-23 1.2E-27 187.0 9.8 91 4-96 5-95 (216)
2 1g9o_A NHE-RF; PDZ domain, com 99.6 2.9E-15 1E-19 115.6 12.3 87 8-96 3-89 (91)
3 3r68_A Na(+)/H(+) exchange reg 99.6 3.7E-15 1.3E-19 115.8 10.9 92 5-98 2-93 (95)
4 2he4_A Na(+)/H(+) exchange reg 99.6 1.6E-14 5.4E-19 111.5 12.8 87 5-94 1-87 (90)
5 1r6j_A Syntenin 1; PDZ, membra 99.6 1.7E-14 6E-19 111.5 11.4 78 6-90 2-79 (82)
6 2vsp_A PDZ domain-containing p 99.6 5.2E-15 1.8E-19 114.6 8.5 86 6-94 1-86 (91)
7 2eei_A PDZ domain-containing p 99.6 7.7E-15 2.6E-19 116.5 7.9 94 4-99 4-97 (106)
8 2jxo_A Ezrin-radixin-moesin-bi 99.5 3.3E-14 1.1E-18 111.3 9.2 88 6-95 7-94 (98)
9 3qe1_A Sorting nexin-27, G pro 99.5 1.4E-13 4.9E-18 109.3 12.0 87 4-93 2-101 (107)
10 1uhp_A Hypothetical protein KI 99.5 3.1E-13 1.1E-17 107.6 13.7 89 2-92 2-100 (107)
11 2d90_A PDZ domain containing p 99.5 3.5E-14 1.2E-18 112.1 8.1 86 5-93 3-88 (102)
12 2v90_A PDZ domain-containing p 99.5 2.7E-13 9.1E-18 105.7 11.5 86 7-95 2-90 (96)
13 2fne_A Multiple PDZ domain pro 99.5 1.8E-13 6.1E-18 111.6 10.8 88 4-94 21-113 (117)
14 3i4w_A Disks large homolog 4; 99.5 4.1E-13 1.4E-17 105.8 12.3 87 4-93 7-94 (104)
15 2d92_A INAD-like protein; PDZ 99.5 2.8E-13 9.7E-18 108.3 10.9 85 7-93 14-104 (108)
16 3o46_A Maguk P55 subfamily mem 99.5 4.5E-13 1.5E-17 104.0 11.6 83 7-92 3-86 (93)
17 3b76_A E3 ubiquitin-protein li 99.5 3E-13 1E-17 110.7 11.0 85 6-91 22-111 (118)
18 2dc2_A GOPC, golgi associated 99.5 3.3E-13 1.1E-17 107.1 11.0 88 5-93 6-95 (103)
19 2dkr_A LIN-7 homolog B; LIN-7B 99.5 3.8E-13 1.3E-17 103.9 11.0 86 5-93 2-89 (93)
20 2f5y_A Regulator of G-protein 99.5 6E-13 2E-17 103.0 11.8 82 7-94 2-83 (91)
21 1i16_A Interleukin 16, LCF; cy 99.5 9.9E-14 3.4E-18 114.8 7.8 85 7-93 28-117 (130)
22 1kwa_A Hcask/LIN-2 protein; PD 99.5 7.5E-13 2.6E-17 102.3 11.9 84 8-94 1-85 (88)
23 2vwr_A Ligand of NUMB protein 99.5 1.2E-12 3.9E-17 101.9 13.1 86 8-94 3-89 (95)
24 2fe5_A Presynaptic protein SAP 99.5 1.1E-12 3.8E-17 101.5 12.9 83 8-93 3-92 (94)
25 2jik_A Synaptojanin-2 binding 99.4 9.3E-13 3.2E-17 103.5 12.4 85 6-93 5-96 (101)
26 3l4f_D SH3 and multiple ankyri 99.4 4.8E-13 1.6E-17 111.3 10.9 86 5-91 24-122 (132)
27 2ego_A General receptor for ph 99.4 1.3E-12 4.4E-17 102.0 12.8 85 6-92 2-94 (96)
28 1x6d_A Interleukin-16; PDZ dom 99.4 8.5E-13 2.9E-17 107.0 12.1 90 5-95 12-104 (119)
29 2iwo_A Multiple PDZ domain pro 99.4 2.7E-13 9.4E-18 110.9 9.1 87 6-94 22-113 (120)
30 1wi4_A Synip, syntaxin binding 99.4 1.1E-12 3.6E-17 105.6 12.3 87 5-94 12-105 (109)
31 2awx_A Synapse associated prot 99.4 1.3E-12 4.6E-17 103.6 12.7 85 8-95 3-94 (105)
32 2opg_A Multiple PDZ domain pro 99.4 2.5E-12 8.4E-17 100.4 13.9 87 6-95 2-91 (98)
33 2kjd_A Sodium/hydrogen exchang 99.4 1.3E-12 4.5E-17 106.9 12.6 90 5-96 6-95 (128)
34 2i1n_A Discs, large homolog 3; 99.4 1.8E-12 6.2E-17 102.0 12.6 84 8-94 4-94 (102)
35 2ehr_A INAD-like protein; PDZ 99.4 6.1E-13 2.1E-17 107.5 10.1 86 3-89 10-106 (117)
36 3gge_A PDZ domain-containing p 99.4 1.9E-12 6.6E-17 102.8 12.6 84 6-92 3-89 (95)
37 1d5g_A Human phosphatase HPTP1 99.4 3.3E-12 1.1E-16 99.3 13.7 86 6-94 3-93 (96)
38 1m5z_A GRIP, AMPA receptor int 99.4 2.6E-12 8.9E-17 98.9 12.7 85 7-92 5-89 (91)
39 4e34_A Golgi-associated PDZ an 99.4 1.5E-12 5.1E-17 99.5 11.2 80 7-87 1-82 (87)
40 2q9v_A Membrane-associated gua 99.4 1.1E-12 3.6E-17 101.0 10.4 83 8-92 2-87 (90)
41 2vsv_A Rhophilin-2; scaffold p 99.4 1.4E-12 4.9E-17 105.5 11.3 81 7-92 22-102 (109)
42 2jil_A GRIP1 protein, glutamat 99.4 1.8E-12 6E-17 101.1 11.4 84 8-94 3-92 (97)
43 1qav_A Alpha-1 syntrophin (res 99.4 1.8E-12 6.1E-17 99.8 11.3 85 6-92 2-88 (90)
44 2qg1_A Multiple PDZ domain pro 99.4 2.7E-12 9.1E-17 99.1 12.3 84 8-93 4-88 (92)
45 1q3o_A Shank1; PDZ, GKAP, pept 99.4 2.1E-12 7.3E-17 103.1 11.9 85 6-91 5-102 (109)
46 1ufx_A KIAA1526 protein; PDZ d 99.4 1.2E-12 4E-17 104.4 10.3 85 6-92 4-95 (103)
47 2byg_A Channel associated prot 99.4 2.5E-12 8.7E-17 104.6 12.4 84 7-93 23-113 (117)
48 3cbz_A Dishevelled-2; PDZ doma 99.4 1E-12 3.6E-17 105.2 10.0 88 6-94 3-96 (108)
49 2dls_A PDZ-rhogef, RHO guanine 99.4 2.5E-12 8.6E-17 100.0 11.7 85 3-94 3-87 (93)
50 3ngh_A PDZ domain-containing p 99.4 1.8E-12 6E-17 102.8 10.7 83 9-93 2-84 (106)
51 1tp5_A Presynaptic density pro 99.4 2.4E-12 8.1E-17 104.2 11.7 88 3-93 9-97 (119)
52 2eno_A Synaptojanin-2-binding 99.4 2.3E-12 7.8E-17 104.7 11.5 85 6-93 15-106 (120)
53 1wha_A KIAA0147 protein, scrib 99.4 1.8E-12 6.2E-17 102.8 10.5 86 6-94 5-98 (105)
54 1ihj_A INAD; intermolecular di 99.4 3.2E-12 1.1E-16 99.7 11.6 85 7-93 4-96 (98)
55 1um1_A KIAA1849 protein, RSGI 99.4 4E-12 1.4E-16 101.5 12.3 91 3-96 3-98 (110)
56 2kpk_A Membrane-associated gua 99.4 5.4E-12 1.8E-16 104.1 13.0 89 4-94 14-105 (129)
57 1ueq_A Membrane associated gua 99.4 8.1E-12 2.8E-16 102.1 13.9 87 6-94 17-106 (123)
58 2dlu_A INAD-like protein; PDZ 99.4 2.4E-12 8.2E-17 102.9 10.5 86 5-94 12-98 (111)
59 3bpu_A Membrane-associated gua 99.4 2.6E-12 8.8E-17 98.5 10.2 83 7-93 2-85 (88)
60 1nf3_C PAR-6B; semi-CRIB motif 99.4 2.9E-12 9.8E-17 105.6 11.1 89 5-94 26-125 (128)
61 2koj_A Partitioning defective 99.4 9.6E-12 3.3E-16 99.3 13.8 89 5-95 8-102 (111)
62 2kv8_A RGS12, regulator of G-p 99.4 5.7E-13 1.9E-17 101.1 6.2 81 7-93 1-81 (83)
63 2db5_A INAD-like protein; PDZ 99.4 1.9E-12 6.4E-17 106.4 9.7 87 5-93 22-114 (128)
64 4amh_A Disks large homolog 1; 99.4 4.5E-12 1.5E-16 101.2 11.7 74 20-94 12-92 (106)
65 2i04_A Membrane-associated gua 99.4 6.7E-12 2.3E-16 95.4 12.1 79 11-91 3-84 (85)
66 1wf8_A Neurabin-I; PDZ domain, 99.4 4.5E-12 1.5E-16 100.8 11.6 86 5-93 6-99 (107)
67 1uep_A Membrane associated gua 99.4 1.1E-12 3.6E-17 104.0 7.8 86 6-93 7-95 (103)
68 1wi2_A Riken cDNA 2700099C19; 99.4 8.3E-12 2.8E-16 98.9 13.1 85 6-93 13-98 (104)
69 1n7e_A AMPA receptor interacti 99.4 1E-11 3.5E-16 96.9 13.4 85 7-94 4-90 (97)
70 2r4h_A Membrane-associated gua 99.4 6.8E-12 2.3E-16 100.9 12.6 86 6-94 22-109 (112)
71 2uzc_A Human pdlim5, PDZ and L 99.4 7.5E-12 2.6E-16 95.8 11.9 83 8-94 3-86 (88)
72 2daz_A INAD-like protein; PDZ 99.4 6.3E-12 2.2E-16 102.8 11.8 86 6-94 23-111 (124)
73 3hpk_A Protein interacting wit 99.4 9.9E-12 3.4E-16 101.6 13.0 84 7-92 18-103 (125)
74 1ujd_A KIAA0559 protein; PDZ d 99.4 6.1E-12 2.1E-16 102.0 11.5 89 6-95 10-110 (117)
75 2yuy_A RHO GTPase activating p 99.3 5.9E-13 2E-17 109.3 5.5 90 2-94 2-120 (126)
76 2djt_A Unnamed protein product 99.3 7.5E-12 2.6E-16 98.8 11.5 87 5-94 8-98 (104)
77 1sgh_B Ezrin-radixin-moesin bi 99.3 3.3E-13 1.1E-17 88.6 2.9 37 271-309 2-39 (39)
78 2jre_A C60-1 PDZ domain peptid 99.3 1.3E-11 4.4E-16 98.1 12.6 89 5-94 9-104 (108)
79 3nfk_A Tyrosine-protein phosph 99.3 5.8E-12 2E-16 99.9 10.4 85 7-92 16-106 (107)
80 1um7_A Synapse-associated prot 99.3 2.5E-12 8.4E-17 102.8 8.2 89 3-94 10-99 (113)
81 2csj_A TJP2 protein; PDZ domai 99.3 3.2E-12 1.1E-16 103.4 8.9 84 7-93 13-103 (117)
82 2pa1_A PDZ and LIM domain prot 99.3 1.3E-11 4.5E-16 94.3 11.8 73 21-94 12-85 (87)
83 2ejy_A 55 kDa erythrocyte memb 99.3 6.3E-12 2.2E-16 99.7 10.2 81 8-91 12-93 (97)
84 1qau_A Neuronal nitric oxide s 99.3 3E-11 1E-15 96.5 14.2 87 10-97 3-90 (112)
85 1v5q_A GRIP1 homolog, glutamat 99.3 8.3E-12 2.8E-16 101.9 11.1 88 6-94 13-107 (122)
86 1uew_A Membrane associated gua 99.3 9.7E-12 3.3E-16 100.1 11.2 87 6-94 8-103 (114)
87 1rgw_A ZAsp protein; PDZ, cyph 99.3 9.3E-12 3.2E-16 94.5 10.5 81 9-93 2-83 (85)
88 2o2t_A Multiple PDZ domain pro 99.3 5E-12 1.7E-16 102.0 9.5 88 6-95 18-111 (117)
89 1wfg_A Regulating synaptic mem 99.3 1E-11 3.6E-16 102.9 11.6 86 8-93 27-126 (131)
90 1q7x_A PDZ2B domain of PTP-BAS 99.3 9E-12 3.1E-16 99.1 10.8 88 5-95 6-103 (108)
91 3soe_A Membrane-associated gua 99.3 9.6E-12 3.3E-16 101.7 11.1 83 7-95 11-94 (113)
92 3axa_A Afadin, nectin-3, prote 99.3 1.2E-11 3.9E-16 98.2 11.2 86 6-95 9-99 (106)
93 2eeg_A PDZ and LIM domain prot 99.3 1.2E-11 4.2E-16 96.1 11.1 87 4-94 4-91 (94)
94 1z87_A Alpha-1-syntrophin; pro 99.3 8.1E-12 2.8E-16 115.8 11.7 89 3-93 72-162 (263)
95 1x5q_A LAP4 protein; PDZ domai 99.3 3.6E-11 1.2E-15 95.9 13.8 87 6-95 13-106 (110)
96 2kom_A Partitioning defective 99.3 3.8E-11 1.3E-15 98.0 14.1 86 6-93 28-119 (121)
97 1b8q_A Protein (neuronal nitri 99.3 9.4E-12 3.2E-16 101.9 10.3 90 7-97 7-97 (127)
98 2pkt_A PDZ and LIM domain prot 99.3 1.6E-11 5.4E-16 94.6 11.0 82 9-94 4-86 (91)
99 2cs5_A Tyrosine-protein phosph 99.3 4.1E-12 1.4E-16 102.9 8.0 88 6-94 13-106 (119)
100 2z17_A Pleckstrin homology SEC 99.3 8.4E-12 2.9E-16 98.8 9.5 80 5-85 12-99 (104)
101 1va8_A Maguk P55 subfamily mem 99.3 1.8E-11 6.2E-16 98.6 11.6 84 8-95 25-109 (113)
102 1vae_A Rhophilin 2, rhophilin, 99.3 1.6E-12 5.5E-17 105.2 5.4 84 4-92 11-94 (111)
103 2q3g_A PDZ and LIM domain prot 99.3 1.8E-11 6.3E-16 93.9 11.0 81 9-93 4-85 (89)
104 2gzv_A PRKCA-binding protein; 99.3 2.5E-11 8.6E-16 98.3 12.2 84 6-91 22-107 (114)
105 1v62_A KIAA1719 protein; struc 99.3 1.5E-11 5.1E-16 99.8 10.9 87 5-93 12-101 (117)
106 3khf_A Microtubule-associated 99.3 1.2E-11 4E-16 96.8 9.9 81 11-94 5-93 (99)
107 2dm8_A INAD-like protein; PDZ 99.3 9.1E-12 3.1E-16 100.2 9.4 86 7-95 16-104 (116)
108 2dmz_A INAD-like protein; PDZ 99.3 2E-11 6.9E-16 100.2 11.7 87 6-94 13-106 (129)
109 2edv_A FERM and PDZ domain-con 99.3 3.2E-12 1.1E-16 100.2 6.3 88 2-94 2-89 (96)
110 2vz5_A TAX1-binding protein 3; 99.3 2.1E-11 7.3E-16 102.2 11.7 92 6-97 21-127 (139)
111 2fcf_A Multiple PDZ domain pro 99.3 3.1E-11 1.1E-15 94.9 12.0 84 8-93 4-98 (103)
112 2w4f_A Protein LAP4; structura 99.3 5E-11 1.7E-15 92.6 12.9 84 9-95 4-94 (97)
113 3egg_C Spinophilin; PP1, serin 99.3 2.2E-11 7.5E-16 105.8 11.8 82 8-92 80-169 (170)
114 3e17_A Tight junction protein 99.3 2.1E-11 7.1E-16 94.1 10.3 73 12-89 4-77 (88)
115 2eeh_A PDZ domain-containing p 99.3 4.2E-11 1.4E-15 94.1 12.2 87 6-95 8-95 (100)
116 2e7k_A Maguk P55 subfamily mem 99.3 1.7E-11 6E-16 95.1 9.3 81 6-90 4-85 (91)
117 2h2b_A Tight junction protein 99.3 4.1E-11 1.4E-15 95.0 11.6 86 6-94 5-97 (107)
118 2g5m_B Neurabin-2; spinophilin 99.3 2E-11 7E-16 97.8 10.0 84 8-94 4-95 (113)
119 1wfv_A Membrane associated gua 99.3 5.5E-12 1.9E-16 99.1 6.5 88 5-95 8-97 (103)
120 2iwq_A Multiple PDZ domain pro 99.3 5.4E-11 1.8E-15 97.7 12.4 87 5-93 21-118 (123)
121 1n7t_A 99-MER peptide of densi 99.3 1.5E-11 5.2E-16 97.0 8.8 86 3-93 6-100 (103)
122 1mfg_A ERB-B2 interacting prot 99.3 4.4E-11 1.5E-15 92.8 11.2 79 9-92 4-91 (95)
123 3sfj_A TAX1-binding protein 3; 99.3 5.1E-11 1.7E-15 93.8 11.5 83 10-92 6-103 (104)
124 1uez_A KIAA1526 protein; PDZ d 99.3 1.5E-11 5.2E-16 96.6 8.4 90 3-94 3-93 (101)
125 3kzd_A TIAM-1, T-lymphoma inva 99.3 5.7E-11 1.9E-15 94.0 11.6 75 7-81 5-82 (94)
126 2edz_A PDZ domain-containing p 99.2 2.6E-11 9E-16 97.5 9.6 85 8-94 13-97 (114)
127 1uju_A Scribble; PDZ domain, c 99.2 5.6E-12 1.9E-16 100.9 5.4 86 6-93 7-103 (111)
128 1ujv_A Membrane associated gua 99.2 8.2E-11 2.8E-15 92.3 11.9 87 3-95 5-92 (96)
129 2iwn_A Multiple PDZ domain pro 99.2 7.4E-11 2.5E-15 91.2 11.3 82 9-93 5-92 (97)
130 1wf7_A Enigma homologue protei 99.2 3.8E-11 1.3E-15 94.8 9.7 87 5-95 2-89 (103)
131 3r0h_A INAD, inactivation-NO-a 99.2 1.5E-10 5.2E-15 101.2 14.5 98 6-105 16-119 (206)
132 1y7n_A Amyloid beta A4 precurs 99.2 9.5E-11 3.3E-15 91.2 11.4 77 8-91 11-87 (90)
133 3gsl_A Disks large homolog 4; 99.2 9.6E-11 3.3E-15 100.9 12.5 84 7-93 4-94 (196)
134 3tsv_A Tight junction protein 99.2 8.6E-11 2.9E-15 96.6 11.5 85 7-95 28-113 (124)
135 1whd_A RGS3, regulator of G-pr 99.2 3E-11 1E-15 95.1 8.2 82 6-93 13-94 (100)
136 2qkv_A Inactivation-NO-after-p 99.2 1.2E-10 4.1E-15 91.0 11.5 81 8-92 8-89 (96)
137 3k1r_A Harmonin; protein-prote 99.2 5.8E-11 2E-15 104.1 10.8 87 6-95 82-169 (192)
138 1vb7_A PDZ and LIM domain 2; P 99.2 3.5E-11 1.2E-15 93.5 8.3 73 21-94 16-89 (94)
139 1wg6_A Hypothetical protein (r 99.2 2.8E-11 9.5E-16 99.8 7.9 82 12-94 29-122 (127)
140 2yt7_A Amyloid beta A4 precurs 99.2 1.3E-10 4.5E-15 91.6 11.5 86 6-92 7-97 (101)
141 2lob_A Golgi-associated PDZ an 98.8 1.5E-12 5.3E-17 105.4 0.0 84 2-86 21-106 (112)
142 1v6b_A Harmonin isoform A1; st 99.2 7.9E-11 2.7E-15 95.7 9.4 83 8-93 18-106 (118)
143 1uit_A Human discs large 5 pro 99.2 1.5E-10 5E-15 93.4 10.9 85 7-95 18-102 (117)
144 3qik_A Phosphatidylinositol 3, 99.2 1.4E-10 5E-15 92.9 10.6 78 9-90 18-98 (101)
145 1v5l_A PDZ and LIM domain 3; a 99.2 1.2E-11 4.1E-16 97.9 3.8 88 6-97 3-91 (103)
146 2qbw_A PDZ-fibronectin fusion 99.2 2E-10 6.7E-15 99.8 11.9 70 21-91 2-80 (195)
147 2la8_A Inactivation-NO-after-p 99.2 1.3E-10 4.5E-15 93.0 9.8 80 10-93 4-84 (106)
148 3cyy_A Tight junction protein 99.1 4.7E-10 1.6E-14 86.1 12.0 82 8-95 2-84 (92)
149 2d8i_A T-cell lymphoma invasio 99.1 6.9E-11 2.4E-15 96.2 7.6 84 7-93 14-100 (114)
150 3gsl_A Disks large homolog 4; 99.1 4E-10 1.4E-14 96.9 12.6 84 8-94 100-190 (196)
151 1x5n_A Harmonin; PDZ domain, u 99.1 1.7E-10 5.9E-15 92.5 9.3 87 4-93 11-98 (114)
152 1wif_A RSGI RUH-020, riken cDN 99.1 8.5E-11 2.9E-15 97.6 7.6 83 7-93 26-110 (126)
153 1uf1_A KIAA1526 protein; PDZ d 99.1 9.7E-10 3.3E-14 90.0 13.9 88 6-96 18-106 (128)
154 2edp_A Fragment, shroom family 99.1 2.1E-10 7.3E-15 90.2 8.9 87 6-95 7-95 (100)
155 1p1d_A PDZ45, glutamate recept 99.1 4.2E-10 1.4E-14 98.3 11.6 88 7-95 5-99 (196)
156 2qt5_A Glutamate receptor-inte 99.1 6.7E-10 2.3E-14 97.1 12.7 87 5-93 4-92 (200)
157 1wh1_A KIAA1095 protein; PDZ d 99.1 2.2E-10 7.4E-15 93.7 8.5 86 8-95 19-108 (124)
158 1w9e_A Syntenin 1; cell adhesi 99.1 1.1E-09 3.7E-14 93.4 12.6 85 6-93 2-86 (166)
159 2eaq_A LIM domain only protein 99.1 7.2E-10 2.5E-14 84.9 10.0 82 10-93 5-88 (90)
160 3tsz_A Tight junction protein 99.0 6.7E-10 2.3E-14 108.0 11.0 86 7-96 8-94 (391)
161 3shw_A Tight junction protein 99.0 7.3E-10 2.5E-14 110.3 10.7 84 9-96 2-86 (468)
162 2xkx_A Disks large homolog 4; 99.0 1.9E-09 6.5E-14 112.0 13.9 84 8-94 307-391 (721)
163 2rcz_A Tight junction protein 99.0 2.9E-09 9.8E-14 79.3 11.2 67 20-92 12-79 (81)
164 3r0h_A INAD, inactivation-NO-a 99.0 2.9E-09 9.9E-14 93.0 11.1 81 9-92 114-195 (206)
165 2xkx_A Disks large homolog 4; 99.0 2.3E-09 7.8E-14 111.5 11.5 85 6-93 57-148 (721)
166 2qt5_A Glutamate receptor-inte 98.9 7.7E-09 2.6E-13 90.3 11.1 84 8-94 106-195 (200)
167 2yub_A LIMK-2, LIM domain kina 98.9 8.8E-09 3E-13 84.0 9.0 87 8-95 12-106 (118)
168 3id1_A Regulator of sigma E pr 98.8 4.3E-08 1.5E-12 76.6 11.1 73 35-109 3-76 (95)
169 1sgh_B Ezrin-radixin-moesin bi 98.8 1.2E-09 4.2E-14 71.7 1.0 36 208-245 2-38 (39)
170 1p1d_A PDZ45, glutamate recept 98.7 7.3E-08 2.5E-12 84.0 11.6 83 10-94 109-195 (196)
171 3suz_A Amyloid beta A4 precurs 98.7 2.2E-08 7.4E-13 97.1 6.2 87 7-94 203-294 (388)
172 2zpm_A Regulator of sigma E pr 98.6 1.7E-07 5.9E-12 71.6 8.9 61 35-97 5-65 (91)
173 2i6v_A General secretion pathw 98.6 1.9E-07 6.6E-12 71.4 8.7 61 35-97 20-81 (87)
174 2l97_A HTRA, putative serine p 98.6 3.9E-07 1.3E-11 75.5 11.1 60 34-96 57-117 (134)
175 3i18_A LMO2051 protein; alpha- 98.6 3.3E-07 1.1E-11 71.9 9.9 62 34-98 7-69 (100)
176 2pzd_A Serine protease HTRA2; 98.5 5.4E-07 1.8E-11 71.8 10.4 61 33-97 34-94 (113)
177 2kl1_A YLBL protein; structure 98.5 3.2E-07 1.1E-11 71.4 8.0 61 34-97 5-66 (94)
178 2kjp_A Uncharacterized protein 98.5 7.1E-08 2.4E-12 75.0 3.9 59 35-96 2-61 (91)
179 2p3w_A Probable serine proteas 98.4 1.6E-06 5.6E-11 68.9 10.5 60 34-97 35-94 (112)
180 1fc6_A Photosystem II D1 prote 98.4 1.1E-06 3.7E-11 84.7 11.2 77 19-95 83-160 (388)
181 2i4s_A General secretion pathw 98.4 8.3E-07 2.8E-11 70.2 8.6 61 35-97 38-99 (105)
182 1y8t_A Hypothetical protein RV 98.4 1.9E-06 6.7E-11 80.7 11.2 73 22-96 230-304 (324)
183 3suz_A Amyloid beta A4 precurs 98.3 7.3E-08 2.5E-12 93.4 0.2 65 21-91 308-372 (388)
184 3rle_A Golgi reassembly-stacki 98.3 2.6E-06 8.9E-11 75.3 9.4 71 21-94 95-170 (209)
185 3stj_A Protease DEGQ; serine p 98.3 3.4E-06 1.2E-10 80.4 10.6 64 34-99 263-327 (345)
186 1w9e_A Syntenin 1; cell adhesi 98.2 8.3E-06 2.8E-10 69.1 11.4 71 8-85 88-158 (166)
187 1te0_A Protease DEGS; two doma 98.2 4.6E-06 1.6E-10 78.1 9.7 62 34-97 244-306 (318)
188 4a8c_A Periplasmic PH-dependen 98.2 9.1E-06 3.1E-10 79.6 12.2 63 34-99 363-425 (436)
189 3rle_A Golgi reassembly-stacki 98.2 2.6E-06 9E-11 75.3 7.5 61 33-95 15-77 (209)
190 1lcy_A HTRA2 serine protease; 98.1 8.4E-06 2.9E-10 76.7 10.2 61 34-98 256-316 (325)
191 3pv2_A DEGQ; trypsin fold, PDZ 98.1 9.4E-06 3.2E-10 80.0 10.3 62 34-98 386-447 (451)
192 2hga_A Conserved protein MTH13 98.1 7.3E-06 2.5E-10 67.3 7.5 58 34-95 25-83 (125)
193 3k50_A Putative S41 protease; 98.1 3.6E-06 1.2E-10 82.1 6.5 71 20-94 73-146 (403)
194 3pv2_A DEGQ; trypsin fold, PDZ 98.1 2E-05 6.7E-10 77.7 11.2 62 34-97 282-344 (451)
195 4a8c_A Periplasmic PH-dependen 98.0 2.4E-05 8.3E-10 76.6 10.9 62 34-97 263-325 (436)
196 4fgm_A Aminopeptidase N family 98.0 1.7E-05 5.9E-10 80.9 10.0 72 21-97 485-557 (597)
197 3qo6_A Protease DO-like 1, chl 98.0 1.5E-05 5.1E-10 75.7 8.1 62 34-97 251-324 (348)
198 2krg_A Na(+)/H(+) exchange reg 98.0 5.4E-06 1.8E-10 74.4 4.7 41 204-246 175-216 (216)
199 1ky9_A Protease DO, DEGP, HTRA 97.7 4.5E-06 1.5E-10 82.3 0.0 71 23-96 372-442 (448)
200 3num_A Serine protease HTRA1; 97.6 8.4E-06 2.9E-10 76.8 0.0 59 34-96 254-312 (332)
201 1ky9_A Protease DO, DEGP, HTRA 97.3 4.2E-05 1.4E-09 75.3 0.9 61 34-96 286-347 (448)
202 1k32_A Tricorn protease; prote 97.3 0.00036 1.2E-08 74.0 7.7 70 20-94 736-815 (1045)
203 4fln_A Protease DO-like 2, chl 96.5 0.0071 2.4E-07 61.1 9.1 67 34-101 277-352 (539)
204 4fln_A Protease DO-like 2, chl 96.5 0.004 1.4E-07 62.8 7.1 56 33-90 414-469 (539)
205 2d10_E Ezrin-radixin-moesin bi 91.1 0.077 2.6E-06 32.3 1.3 22 288-309 6-28 (28)
206 2d11_E Na(+)/H(+) exchange reg 90.4 0.1 3.4E-06 31.8 1.2 22 288-309 6-28 (28)
207 3owt_C Regulatory protein SIR3 48.4 3.9 0.00013 24.0 0.1 9 298-306 16-24 (27)
208 2do1_A Nuclear protein HCC-1; 34.2 20 0.0007 25.0 2.0 20 274-294 12-31 (55)
209 3dor_A Protein CT_858, CPAF; m 33.8 54 0.0019 33.2 5.8 39 23-66 86-124 (583)
210 2ad6_B Methanol dehydrogenase 29.2 16 0.00054 26.4 0.7 21 288-308 26-46 (69)
211 1w6s_B Methanol dehydrogenase 25.3 21 0.0007 26.2 0.7 20 288-307 26-45 (74)
212 1lrw_B Methanol dehydrogenase 22.1 26 0.00088 26.1 0.7 20 288-307 26-45 (83)
213 1zrj_A E1B-55KDA-associated pr 20.3 48 0.0017 22.5 1.8 20 274-294 12-31 (50)
No 1
>2krg_A Na(+)/H(+) exchange regulatory cofactor NHE-RF1; acetylation, cell projection, disease mutation, membrane, phosphoprotein, polymorphism; NMR {Homo sapiens}
Probab=99.88 E-value=3.5e-23 Score=187.04 Aligned_cols=91 Identities=51% Similarity=0.739 Sum_probs=77.2
Q ss_pred CCCCceEEEEEeeCCCCcceeEEEeccCCCCCeEEEEeCCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCC
Q psy10428 4 DKTPVVRLCHILKWTDFDGYGFNLHGEKGKTGQYIGKVDEGSPAEAAGLKEGDHIIEVNSVNICNENHNQVVQRIKAVPD 83 (309)
Q Consensus 4 ~~~~~pR~v~L~K~~~~~G~GFsl~ggk~~~Gi~V~~V~pgSpA~~AGLq~GD~Il~VNG~~V~~~sh~dvv~~Lk~s~~ 83 (309)
....++|.|.|.++. .||||.+.++.+..|++|..|.+++||+++||+.||+|++|||..|.+.+|.++..+|+..+.
T Consensus 5 ~~~~~~r~v~l~k~~--~glG~~l~~~~~~~gv~V~~V~~gSpA~~aGL~~GD~Il~VNG~~V~~~s~~dl~~~l~~~g~ 82 (216)
T 2krg_A 5 FTMLRPRLCTMKKGP--SGYGFNLHSDKSKPGQFIRSVDPDSPAEASGLRAQDRIVEVNGVCMEGKQHGDVVSAIRAGGD 82 (216)
T ss_dssp TTTCCCEEEEEECCS--SSSCEEECCCSSSCSCBEEEECTTSHHHHHTCCTTCBCCEETTEECTTCCTHHHHHHHHHHCS
T ss_pred ccccceEEEEEEeCC--CCceEEEEecCCCCCeEEEEeCCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhcCC
Confidence 346789999999987 899999998876668999999999999999999999999999999988899999999987744
Q ss_pred CeEEEEEEeCCee
Q psy10428 84 ETKLLVVDVASEE 96 (309)
Q Consensus 84 ~vvllvv~r~~~~ 96 (309)
.+..+++.|++..
T Consensus 83 ~v~~l~V~R~g~~ 95 (216)
T 2krg_A 83 ETKLLVVDRETDE 95 (216)
T ss_dssp EEEEEECCHHHHH
T ss_pred eEEEEEEEECCEE
Confidence 3426676665543
No 2
>1g9o_A NHE-RF; PDZ domain, complex, signaling protein; 1.50A {Homo sapiens} SCOP: b.36.1.1 PDB: 1i92_A 1gq4_A 1gq5_A 2ocs_A
Probab=99.63 E-value=2.9e-15 Score=115.65 Aligned_cols=87 Identities=55% Similarity=0.890 Sum_probs=78.5
Q ss_pred ceEEEEEeeCCCCcceeEEEeccCCCCCeEEEEeCCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCCeEE
Q psy10428 8 VVRLCHILKWTDFDGYGFNLHGEKGKTGQYIGKVDEGSPAEAAGLKEGDHIIEVNSVNICNENHNQVVQRIKAVPDETKL 87 (309)
Q Consensus 8 ~pR~v~L~K~~~~~G~GFsl~ggk~~~Gi~V~~V~pgSpA~~AGLq~GD~Il~VNG~~V~~~sh~dvv~~Lk~s~~~vvl 87 (309)
+||+|.|.|++ .+|||.+.++.+..+++|..|.++|||+++||++||+|++|||.++.+.++.++..+++..++.+.+
T Consensus 3 ~~r~v~l~r~~--~g~G~~~~~~~~~~g~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~~~~ 80 (91)
T 1g9o_A 3 LPRLCCLEKGP--NGYGFHLHGEKGKLGQYIRLVEPGSPAEKAGLLAGDRLVEVNGENVEKETHQQVVSRIRAALNAVRL 80 (91)
T ss_dssp CCEEEEEECBT--TBCCEEEEECTTCSSEEEEEECTTSHHHHTTCCTTCEEEEETTEECTTCCHHHHHHHHHTCSSEEEE
T ss_pred ccEEEEEEeCC--CcccEEEEecCCCCCEEEEEECCCCHHHHCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCcEEE
Confidence 68999999997 7999999988766799999999999999999999999999999999988999999999988777777
Q ss_pred EEEEeCCee
Q psy10428 88 LVVDVASEE 96 (309)
Q Consensus 88 lvv~r~~~~ 96 (309)
+++++++.+
T Consensus 81 ~~~~r~~~~ 89 (91)
T 1g9o_A 81 LVVDPETDE 89 (91)
T ss_dssp EEECCCCSC
T ss_pred EEEcCCccc
Confidence 777776543
No 3
>3r68_A Na(+)/H(+) exchange regulatory cofactor NHE-RF3; PDZ domain, adaptor protein, SR-BI, signaling protein; 1.30A {Mus musculus} SCOP: b.36.1.0 PDB: 3r69_A*
Probab=99.61 E-value=3.7e-15 Score=115.82 Aligned_cols=92 Identities=38% Similarity=0.545 Sum_probs=77.2
Q ss_pred CCCceEEEEEeeCCCCcceeEEEeccCCCCCeEEEEeCCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCC
Q psy10428 5 KTPVVRLCHILKWTDFDGYGFNLHGEKGKTGQYIGKVDEGSPAEAAGLKEGDHIIEVNSVNICNENHNQVVQRIKAVPDE 84 (309)
Q Consensus 5 ~~~~pR~v~L~K~~~~~G~GFsl~ggk~~~Gi~V~~V~pgSpA~~AGLq~GD~Il~VNG~~V~~~sh~dvv~~Lk~s~~~ 84 (309)
+..+||.|.|.|+. .+|||.+.++....+++|..|.++|||+++||++||+|++|||.++.+.+|.++..+|+..++.
T Consensus 2 sp~~~r~v~l~~~~--~~~G~~l~~~~~~~~~~V~~v~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~ 79 (95)
T 3r68_A 2 SPHQPRVVVIKKGS--NGYGFYLRAGPEQKGQIIKDIEPGSPAEAAGLKNNDLVVAVNGKSVEALDHDGVVEMIRKGGDQ 79 (95)
T ss_dssp CCCCCEEEEEECBT--TBCSCEEEEC--CCSEEEECCCTTSHHHHHTCCTTEEEEEETTEECTTCCHHHHHHHHHTTTTE
T ss_pred CCCCcEEEEEecCC--CcccEEEEecCCCCCEEEEEECCCCHHHHCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCe
Confidence 45689999999987 8999999987655689999999999999999999999999999999988999999999998787
Q ss_pred eEEEEEEeCCeeee
Q psy10428 85 TKLLVVDVASEEYF 98 (309)
Q Consensus 85 vvllvv~r~~~~~~ 98 (309)
+.+++++++....+
T Consensus 80 ~~~~~~r~~~~~~~ 93 (95)
T 3r68_A 80 TTLLVLDKELERPH 93 (95)
T ss_dssp EEEEEEECC-----
T ss_pred EEEEEECCcccccc
Confidence 87777777665543
No 4
>2he4_A Na(+)/H(+) exchange regulatory cofactor NHE-RF2; phosphorylation, structural genomics, structural genomics consortium, SGC, unknown function; 1.45A {Homo sapiens} PDB: 2ozf_A
Probab=99.59 E-value=1.6e-14 Score=111.45 Aligned_cols=87 Identities=46% Similarity=0.694 Sum_probs=75.4
Q ss_pred CCCceEEEEEeeCCCCcceeEEEeccCCCCCeEEEEeCCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCC
Q psy10428 5 KTPVVRLCHILKWTDFDGYGFNLHGEKGKTGQYIGKVDEGSPAEAAGLKEGDHIIEVNSVNICNENHNQVVQRIKAVPDE 84 (309)
Q Consensus 5 ~~~~pR~v~L~K~~~~~G~GFsl~ggk~~~Gi~V~~V~pgSpA~~AGLq~GD~Il~VNG~~V~~~sh~dvv~~Lk~s~~~ 84 (309)
+++++|+|.|.|++ .+|||.+.++....|++|..|.++|||+++||++||+|++|||.++.+.+|.++..+|+..+ .
T Consensus 1 s~~~~r~v~l~k~~--~g~G~~~~~~~~~~gv~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~~-~ 77 (90)
T 2he4_A 1 SMLRPRLCHLRKGP--QGYGFNLHSDKSRPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKARE-D 77 (90)
T ss_dssp CTTCCEEEEEECBT--TBCCEEEEECSSSSSEEEEEECTTSHHHHHTCCTTCEEEEETTEECTTSCHHHHHHHHTTSS-S
T ss_pred CCCCcEEEEEEECC--CCccEEEEccCCCCCEEEEEECCCChHHHCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC-C
Confidence 46789999999987 89999999887667899999999999999999999999999999998888899999998874 4
Q ss_pred eEEEEEEeCC
Q psy10428 85 TKLLVVDVAS 94 (309)
Q Consensus 85 vvllvv~r~~ 94 (309)
.+.+.+.|..
T Consensus 78 ~v~l~v~r~~ 87 (90)
T 2he4_A 78 EARLLVVGPS 87 (90)
T ss_dssp EEEEEEECCC
T ss_pred cEEEEEEccC
Confidence 4445555543
No 5
>1r6j_A Syntenin 1; PDZ, membrane protein; 0.73A {Homo sapiens} SCOP: b.36.1.1 PDB: 1nte_A 1obx_A 1oby_A
Probab=99.57 E-value=1.7e-14 Score=111.48 Aligned_cols=78 Identities=18% Similarity=0.204 Sum_probs=68.0
Q ss_pred CCceEEEEEeeCCCCcceeEEEeccCCCCCeEEEEeCCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCCe
Q psy10428 6 TPVVRLCHILKWTDFDGYGFNLHGEKGKTGQYIGKVDEGSPAEAAGLKEGDHIIEVNSVNICNENHNQVVQRIKAVPDET 85 (309)
Q Consensus 6 ~~~pR~v~L~K~~~~~G~GFsl~ggk~~~Gi~V~~V~pgSpA~~AGLq~GD~Il~VNG~~V~~~sh~dvv~~Lk~s~~~v 85 (309)
+..+|.|.|+|++ ..+|||++.++ +|..+.+++||+++||+.||+|++|||+++.+.+|++++++|+.++..+
T Consensus 2 ~~~~r~v~l~k~~-~g~~Gf~i~~g------~I~~v~~gspA~~aGl~~GD~Il~VNG~~v~~~~~~evv~llr~~g~~V 74 (82)
T 1r6j_A 2 AMDPRTITMHKDS-TGHVGFIFKNG------KITSIVKDSSAARNGLLTEHNICEINGQNVIGLKDSQIADILSTSGTVV 74 (82)
T ss_dssp TTCCEEEEEECCT-TSCCCEEEETT------EEEEECTTSHHHHHTCCSSEEEEEETTEECTTCCHHHHHHHHHHSCSEE
T ss_pred CCceEEEEEEECC-CCCeEEEEECC------EEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHhcCCCEE
Confidence 5678999999986 35799999875 4889999999999999999999999999999999999999999776666
Q ss_pred EEEEE
Q psy10428 86 KLLVV 90 (309)
Q Consensus 86 vllvv 90 (309)
.+.++
T Consensus 75 ~L~v~ 79 (82)
T 1r6j_A 75 TITIM 79 (82)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 55443
No 6
>2vsp_A PDZ domain-containing protein 1; membrane, cytoplasm, phosphoprotein, transport protein, CAsp; 2.60A {Homo sapiens} PDB: 2eej_A
Probab=99.57 E-value=5.2e-15 Score=114.56 Aligned_cols=86 Identities=38% Similarity=0.651 Sum_probs=72.8
Q ss_pred CCceEEEEEeeCCCCcceeEEEeccCCCCCeEEEEeCCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCCe
Q psy10428 6 TPVVRLCHILKWTDFDGYGFNLHGEKGKTGQYIGKVDEGSPAEAAGLKEGDHIIEVNSVNICNENHNQVVQRIKAVPDET 85 (309)
Q Consensus 6 ~~~pR~v~L~K~~~~~G~GFsl~ggk~~~Gi~V~~V~pgSpA~~AGLq~GD~Il~VNG~~V~~~sh~dvv~~Lk~s~~~v 85 (309)
|++||+|.|.|++ .+|||.+.+..+..+++|..|.++|||+++||++||+|++|||.++.+.++.++..+|+.. +..
T Consensus 1 ~~~pr~v~l~k~~--~~~G~~l~~~~~~~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~-g~~ 77 (91)
T 2vsp_A 1 SMKPKLCRLAKGE--NGYGFHLNAIRGLPGSFIKEVQKGGPADLAGLEDEDVIIEVNGVNVLDEPYEKVVDRIQSS-GKN 77 (91)
T ss_dssp -CCEEEEEEECBT--TBTSCCCBCCTTCSCCBC-CCCTTSHHHHTTCCTTCEEEEETTEECTTSCHHHHHHHHTTS-CSE
T ss_pred CCCcEEEEEEeCC--CcccEEEEeccCCCCeEEEEECCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHcC-CCE
Confidence 5789999999987 6999999887666789999999999999999999999999999999878999999999887 555
Q ss_pred EEEEEEeCC
Q psy10428 86 KLLVVDVAS 94 (309)
Q Consensus 86 vllvv~r~~ 94 (309)
+.+.+.|.+
T Consensus 78 v~l~v~r~~ 86 (91)
T 2vsp_A 78 VTLLVCGKK 86 (91)
T ss_dssp EEEEEEC--
T ss_pred EEEEEEeCC
Confidence 556666654
No 7
>2eei_A PDZ domain-containing protein 1; regulatory factor, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.55 E-value=7.7e-15 Score=116.50 Aligned_cols=94 Identities=31% Similarity=0.529 Sum_probs=78.0
Q ss_pred CCCCceEEEEEeeCCCCcceeEEEeccCCCCCeEEEEeCCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCC
Q psy10428 4 DKTPVVRLCHILKWTDFDGYGFNLHGEKGKTGQYIGKVDEGSPAEAAGLKEGDHIIEVNSVNICNENHNQVVQRIKAVPD 83 (309)
Q Consensus 4 ~~~~~pR~v~L~K~~~~~G~GFsl~ggk~~~Gi~V~~V~pgSpA~~AGLq~GD~Il~VNG~~V~~~sh~dvv~~Lk~s~~ 83 (309)
..+.++|+|.|.|+. .+|||.+.+.....+++|..|.++|||+++||++||+|++|||.++...+|.++..+++..+.
T Consensus 4 ~~~~~~r~v~l~k~~--~~~G~~l~~~~~~~g~~V~~V~~~spA~~aGl~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~ 81 (106)
T 2eei_A 4 GSSGQPRLCYLVKEG--GSYGFSLKTVQGKKGVYMTDITPQGVAMRAGVLADDHLIEVNGENVEDASHEEVVEKVKKSGS 81 (106)
T ss_dssp CCCSSSEEEEEECCS--SSCSCCEECCSSCCSCEECCCCTTSHHHHHTCCSSEEEEEETTEECTTCCHHHHHHHHHHHCS
T ss_pred CCCCCCEEEEEEECC--CCCCEEEEeccCCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCC
Confidence 357899999999975 899999987766679999999999999999999999999999999988899999999887755
Q ss_pred CeEEEEEEeCCeeeeE
Q psy10428 84 ETKLLVVDVASEEYFK 99 (309)
Q Consensus 84 ~vvllvv~r~~~~~~~ 99 (309)
.+.+.+++++...++.
T Consensus 82 ~v~l~v~r~~~~~~~~ 97 (106)
T 2eei_A 82 RVMFLLVDKETDKRHV 97 (106)
T ss_dssp EEEEEECCTTTSCCCC
T ss_pred eEEEEEEcCchhhHHH
Confidence 5544444444444443
No 8
>2jxo_A Ezrin-radixin-moesin-binding phosphoprotein 50; nherf-1, PDZ domain, PDZ2, acetylation, cell projection, membrane, polymorphism; NMR {Homo sapiens}
Probab=99.52 E-value=3.3e-14 Score=111.31 Aligned_cols=88 Identities=51% Similarity=0.767 Sum_probs=76.7
Q ss_pred CCceEEEEEeeCCCCcceeEEEeccCCCCCeEEEEeCCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCCe
Q psy10428 6 TPVVRLCHILKWTDFDGYGFNLHGEKGKTGQYIGKVDEGSPAEAAGLKEGDHIIEVNSVNICNENHNQVVQRIKAVPDET 85 (309)
Q Consensus 6 ~~~pR~v~L~K~~~~~G~GFsl~ggk~~~Gi~V~~V~pgSpA~~AGLq~GD~Il~VNG~~V~~~sh~dvv~~Lk~s~~~v 85 (309)
...+|.|.|.+.. .||||.+.++....+++|..|.++|||+++||++||+|++|||.++.+.++.++..+|+...+..
T Consensus 7 ~~~~~~~~l~~~~--~g~G~~~~~~~~~~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~~ 84 (98)
T 2jxo_A 7 MLRPRLCTMKKGP--SGYGFNLHSDKSKPGQFIRSVDPDSPAEASGLRAQDRIVEVNGVCMEGKQHGDVVSAIRAGGDET 84 (98)
T ss_dssp SSCCEEEEEECTT--TCCCEEEECCCSSSCEEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHHTTTTEE
T ss_pred cCCcEEEEEEeCC--CcccEEEEecCCCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCcE
Confidence 4578999999986 89999999886666999999999999999999999999999999997777999999999886666
Q ss_pred EEEEEEeCCe
Q psy10428 86 KLLVVDVASE 95 (309)
Q Consensus 86 vllvv~r~~~ 95 (309)
+.+++.|++.
T Consensus 85 ~~l~v~R~g~ 94 (98)
T 2jxo_A 85 KLLVVDRETD 94 (98)
T ss_dssp EEEECCHHHH
T ss_pred EEEEEECCch
Confidence 6677666543
No 9
>3qe1_A Sorting nexin-27, G protein-activated inward RECT potassium channel 3 chimera; PDZ domain, PDZ binding, GIRK3 regulation, early endosomes; 1.68A {Rattus norvegicus} SCOP: b.36.1.0 PDB: 3qdo_A 3qgl_A
Probab=99.51 E-value=1.4e-13 Score=109.32 Aligned_cols=87 Identities=37% Similarity=0.546 Sum_probs=70.4
Q ss_pred CCCCceEEEEEeeCCCCcceeEEEeccCCC-------------CCeEEEEeCCCCHHHHcCCCCCCEEEEECCEEcCCCC
Q psy10428 4 DKTPVVRLCHILKWTDFDGYGFNLHGEKGK-------------TGQYIGKVDEGSPAEAAGLKEGDHIIEVNSVNICNEN 70 (309)
Q Consensus 4 ~~~~~pR~v~L~K~~~~~G~GFsl~ggk~~-------------~Gi~V~~V~pgSpA~~AGLq~GD~Il~VNG~~V~~~s 70 (309)
+.|+.+|.|.|.|.. .+|||.+.++... ++++|..|.++|||+++||+.||+|++|||.++.+.+
T Consensus 2 s~~~~~r~v~l~k~~--~g~G~~l~~~~~~~~~~~~~~~~~~~p~~~V~~v~~~spA~~aGl~~GD~I~~ing~~v~~~~ 79 (107)
T 3qe1_A 2 SHGGSPRVVRIVKSE--SGYGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLPGGAADRAGVRKGDRILEVNGVNVEGAT 79 (107)
T ss_dssp ----CCEEEEEECBT--TBTCEEEECCSSSCCCCEESSSSEESCCEEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCC
T ss_pred CCCCCcEEEEEEECC--CCCCEEEEcccccCCcceeccccccCCceEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCC
Confidence 357899999999987 6999999887432 3457999999999999999999999999999998889
Q ss_pred HHHHHHHHHhCCCCeEEEEEEeC
Q psy10428 71 HNQVVQRIKAVPDETKLLVVDVA 93 (309)
Q Consensus 71 h~dvv~~Lk~s~~~vvllvv~r~ 93 (309)
|.++..+|+..+..+ .+.+.|.
T Consensus 80 ~~~~~~~l~~~g~~v-~l~v~r~ 101 (107)
T 3qe1_A 80 HKQVVDLIRAGEKEL-ILTVLSV 101 (107)
T ss_dssp HHHHHHHHHHCSSEE-EEEEECS
T ss_pred HHHHHHHHHcCCCEE-EEEEEcC
Confidence 999999999875544 4455553
No 10
>1uhp_A Hypothetical protein KIAA1095; PDZ domain, semaphorin cytoplasmic domain associated protein, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.51 E-value=3.1e-13 Score=107.64 Aligned_cols=89 Identities=25% Similarity=0.402 Sum_probs=76.1
Q ss_pred CCCCCCceEEEEEeeCCCCcceeEEEeccCC---------CCCeEEEEeCCCCHHHHc-CCCCCCEEEEECCEEcCCCCH
Q psy10428 2 SEDKTPVVRLCHILKWTDFDGYGFNLHGEKG---------KTGQYIGKVDEGSPAEAA-GLKEGDHIIEVNSVNICNENH 71 (309)
Q Consensus 2 ~e~~~~~pR~v~L~K~~~~~G~GFsl~ggk~---------~~Gi~V~~V~pgSpA~~A-GLq~GD~Il~VNG~~V~~~sh 71 (309)
+.....+++.|.|.|.. .+|||.|.++.. ..+++|..|.++|||+++ ||++||+|++|||.++.+.+|
T Consensus 2 s~~~~~~~~~v~l~k~~--~~lG~~i~g~~~~~~~~~~~~~~gv~V~~V~~~spA~~aggL~~GD~Il~vng~~v~~~~~ 79 (107)
T 1uhp_A 2 SSGSSGKSLTLVLHRDS--GSLGFNIIGGRPSVDNHDGSSSEGIFVSKIVDSGPAAKEGGLQIHDRIIEVNGRDLSRATH 79 (107)
T ss_dssp CCCCSSEEEEEEECCSS--SCCSEEEECCCSCCCCTTSSCSCCCEEEEECSSSHHHHTTCCCSSCEEEEETTEECTTCCH
T ss_pred CCCcCcEEEEEEEEeCC--CccCEEEEcCCCCcccccccCCCCEEEEEeCCCChHHHcCCCCCCCEEEEECCEECCCCCH
Confidence 34567789999999985 899999998652 468999999999999999 899999999999999999999
Q ss_pred HHHHHHHHhCCCCeEEEEEEe
Q psy10428 72 NQVVQRIKAVPDETKLLVVDV 92 (309)
Q Consensus 72 ~dvv~~Lk~s~~~vvllvv~r 92 (309)
.+++.+++..+..+.++++++
T Consensus 80 ~~~~~~~~~~~~~v~l~v~R~ 100 (107)
T 1uhp_A 80 DQAVEAFKTAKEPIVVQVLRR 100 (107)
T ss_dssp HHHHHHHHHCCSSEEEEEEEC
T ss_pred HHHHHHHHcCCCcEEEEEEeC
Confidence 999999998776665555443
No 11
>2d90_A PDZ domain containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.51 E-value=3.5e-14 Score=112.07 Aligned_cols=86 Identities=37% Similarity=0.524 Sum_probs=73.8
Q ss_pred CCCceEEEEEeeCCCCcceeEEEeccCCCCCeEEEEeCCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCC
Q psy10428 5 KTPVVRLCHILKWTDFDGYGFNLHGEKGKTGQYIGKVDEGSPAEAAGLKEGDHIIEVNSVNICNENHNQVVQRIKAVPDE 84 (309)
Q Consensus 5 ~~~~pR~v~L~K~~~~~G~GFsl~ggk~~~Gi~V~~V~pgSpA~~AGLq~GD~Il~VNG~~V~~~sh~dvv~~Lk~s~~~ 84 (309)
...++|+|.|.|+. .+|||.+.+.....+++|..|.++|||+++||++||+|++|||.++.+.++.++..+++..+..
T Consensus 3 ~~~~~r~v~l~k~~--~g~G~~l~~~~~~~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~ 80 (102)
T 2d90_A 3 SGSSGRVVVIKKGS--NGYGFYLRAGPEQKGQIIKDIEPGSPAEAAGLKNNDLVVAVNGKSVEALDHDGVVEMIRKGGDQ 80 (102)
T ss_dssp SCSSSEEEEEECCS--SSSSCEEEECSSSSSEEEECCCTTSTTTTTTCCTTCEEEEESSCBCTTSCHHHHHHHHHHSTTE
T ss_pred CCCCCEEEEEeeCC--CCccEEEEeecCCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCE
Confidence 45688999999987 8999999987656799999999999999999999999999999999888899999999886544
Q ss_pred eEEEEEEeC
Q psy10428 85 TKLLVVDVA 93 (309)
Q Consensus 85 vvllvv~r~ 93 (309)
+ .+.+.+.
T Consensus 81 v-~l~v~r~ 88 (102)
T 2d90_A 81 T-TLLVLDK 88 (102)
T ss_dssp E-EEEECST
T ss_pred E-EEEEEEC
Confidence 4 4455443
No 12
>2v90_A PDZ domain-containing protein 3; membrane, protein-binding; 2.00A {Homo sapiens}
Probab=99.48 E-value=2.7e-13 Score=105.70 Aligned_cols=86 Identities=33% Similarity=0.516 Sum_probs=72.8
Q ss_pred CceEEEEEeeCCCCcceeEEEeccCC---CCCeEEEEeCCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCC
Q psy10428 7 PVVRLCHILKWTDFDGYGFNLHGEKG---KTGQYIGKVDEGSPAEAAGLKEGDHIIEVNSVNICNENHNQVVQRIKAVPD 83 (309)
Q Consensus 7 ~~pR~v~L~K~~~~~G~GFsl~ggk~---~~Gi~V~~V~pgSpA~~AGLq~GD~Il~VNG~~V~~~sh~dvv~~Lk~s~~ 83 (309)
.+||+|.|.|+. .+|||.+.+..+ ..|++|..|.++|||+++||++||+|++|||.++.+.+|.++..+++.. +
T Consensus 2 ~~~r~v~l~k~~--~~~G~~l~~~~~~~~~~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~-g 78 (96)
T 2v90_A 2 MKPRCLHLEKGP--QGFGFLLREEKGLDGRPGQFLWEVDPGLPAKKAGMQAGDRLVAVAGESVEGLGHEETVSRIQGQ-G 78 (96)
T ss_dssp CCCEEEEEECBT--TBSCEEEEEEECTTSCEEEEEEEECTTSHHHHTTCCTTEEEEEETTEECTTCCHHHHHHHHHTT-T
T ss_pred CCCEEEEEEeCC--CcccEEEEeccCCCCCCCeEEEEECCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHcC-C
Confidence 378999999987 799999987432 2379999999999999999999999999999999888899999999887 4
Q ss_pred CeEEEEEEeCCe
Q psy10428 84 ETKLLVVDVASE 95 (309)
Q Consensus 84 ~vvllvv~r~~~ 95 (309)
..+.+.+.|.+.
T Consensus 79 ~~v~l~v~r~~~ 90 (96)
T 2v90_A 79 SCVSLTVVDPEA 90 (96)
T ss_dssp TEEEEEEECCCT
T ss_pred CEEEEEEECCCC
Confidence 555566666543
No 13
>2fne_A Multiple PDZ domain protein; structural protein, structural genomics, SGC, structural genomics consortium, unknown function; 1.83A {Homo sapiens} SCOP: b.36.1.1
Probab=99.48 E-value=1.8e-13 Score=111.55 Aligned_cols=88 Identities=27% Similarity=0.406 Sum_probs=74.7
Q ss_pred CCCCceEEEEEeeCCCCcceeEEEeccCC----CCCeEEEEeCCCCHHHHcC-CCCCCEEEEECCEEcCCCCHHHHHHHH
Q psy10428 4 DKTPVVRLCHILKWTDFDGYGFNLHGEKG----KTGQYIGKVDEGSPAEAAG-LKEGDHIIEVNSVNICNENHNQVVQRI 78 (309)
Q Consensus 4 ~~~~~pR~v~L~K~~~~~G~GFsl~ggk~----~~Gi~V~~V~pgSpA~~AG-Lq~GD~Il~VNG~~V~~~sh~dvv~~L 78 (309)
..++++|.|.|.|++ .+|||++.++.+ ..|++|..|.++|||+++| |++||+|++|||.++.+.++.+++.++
T Consensus 21 ~~~~~~~~v~L~k~~--~glGf~l~~g~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l 98 (117)
T 2fne_A 21 QSMPQCKSITLERGP--DGLGFSIVGGYGSPHGDLPIYVKTVFAKGAASEDGRLKRGDQIIAVNGQSLEGVTHEEAVAIL 98 (117)
T ss_dssp --CCEEEEEEECCBT--TBTSEEEEEEEEETTEEEEEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHH
T ss_pred cCCCccEEEEEEeCC--CcccEEEecccCCCCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHH
Confidence 347889999999987 899999998743 2479999999999999999 999999999999999888999999999
Q ss_pred HhCCCCeEEEEEEeCC
Q psy10428 79 KAVPDETKLLVVDVAS 94 (309)
Q Consensus 79 k~s~~~vvllvv~r~~ 94 (309)
+..++.+ .+.+.|.+
T Consensus 99 ~~~~~~v-~l~v~R~g 113 (117)
T 2fne_A 99 KRTKGTV-TLMVLSSD 113 (117)
T ss_dssp HHCCSSE-EEEEEECS
T ss_pred HcCCCeE-EEEEEeCC
Confidence 9887664 45555554
No 14
>3i4w_A Disks large homolog 4; alpha and beta protein, alternative splicing, cell junction, cell membrane, lipoprotein, membrane, palmitate, phosphoprotein; 1.35A {Homo sapiens} SCOP: b.36.1.1 PDB: 3k82_A* 3jxt_A* 2he2_A 1pdr_A 2i0i_A
Probab=99.48 E-value=4.1e-13 Score=105.83 Aligned_cols=87 Identities=29% Similarity=0.492 Sum_probs=74.8
Q ss_pred CCCCceEEEEEeeCCCCcceeEEEeccCCCCCeEEEEeCCCCHHHHcC-CCCCCEEEEECCEEcCCCCHHHHHHHHHhCC
Q psy10428 4 DKTPVVRLCHILKWTDFDGYGFNLHGEKGKTGQYIGKVDEGSPAEAAG-LKEGDHIIEVNSVNICNENHNQVVQRIKAVP 82 (309)
Q Consensus 4 ~~~~~pR~v~L~K~~~~~G~GFsl~ggk~~~Gi~V~~V~pgSpA~~AG-Lq~GD~Il~VNG~~V~~~sh~dvv~~Lk~s~ 82 (309)
.....+|.|.|.|.. .+|||.+.++....|++|..|.++|||+++| |++||+|++|||.++.+.++.++...++..+
T Consensus 7 ~~~~~~~~v~l~k~~--~glG~~~~~~~~~~gv~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~~~ 84 (104)
T 3i4w_A 7 DIPREPRRIVIHRGS--TGLGFNIVGGEXGEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAG 84 (104)
T ss_dssp CCCSSCEEEEEECBT--TBTSEEEEECC-CCCEEEEEECTTSHHHHHCCCCTTEEEEEETTEECTTCCHHHHHHHHHTSC
T ss_pred CCCCccEEEEEEeCC--CccCEEEECCCCCCCEEEEEECCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC
Confidence 446789999999986 8999999988766699999999999999999 9999999999999999999999999998875
Q ss_pred CCeEEEEEEeC
Q psy10428 83 DETKLLVVDVA 93 (309)
Q Consensus 83 ~~vvllvv~r~ 93 (309)
..+ .+.+.+.
T Consensus 85 ~~v-~l~v~r~ 94 (104)
T 3i4w_A 85 QTV-TIIAQYK 94 (104)
T ss_dssp SEE-EEEEEEC
T ss_pred CeE-EEEEEEC
Confidence 544 4555554
No 15
>2d92_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}
Probab=99.47 E-value=2.8e-13 Score=108.30 Aligned_cols=85 Identities=26% Similarity=0.369 Sum_probs=73.5
Q ss_pred CceEEEEEeeCCCCcceeEEEeccCC-----CCCeEEEEeCCCCHHHHcC-CCCCCEEEEECCEEcCCCCHHHHHHHHHh
Q psy10428 7 PVVRLCHILKWTDFDGYGFNLHGEKG-----KTGQYIGKVDEGSPAEAAG-LKEGDHIIEVNSVNICNENHNQVVQRIKA 80 (309)
Q Consensus 7 ~~pR~v~L~K~~~~~G~GFsl~ggk~-----~~Gi~V~~V~pgSpA~~AG-Lq~GD~Il~VNG~~V~~~sh~dvv~~Lk~ 80 (309)
..+|.|.|.|.+ .+|||.|.++.. ..+++|..|.+++||+++| |++||+|++|||.++.+.+|.+++.+|+.
T Consensus 14 ~~~~~v~l~k~~--~glG~~i~~~~~~~~~~~~g~~V~~v~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~ 91 (108)
T 2d92_A 14 PEVKIVELVKDC--KGLGFSILDYQDPLDPTRSVIVIRSLVADGVAERSGGLLPGDRLVSVNEYCLDNTSLAEAVEILKA 91 (108)
T ss_dssp SSCEEEEEEECS--SCCSEEEEEEECSSCTTCEEEEEEEECTTCHHHHHTCCCTTCEEEEESSCBCTTCCHHHHHHHHHH
T ss_pred CceEEEEEEECC--CccCEEEecccccCCCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHh
Confidence 367999999987 899999988643 4579999999999999999 99999999999999999999999999999
Q ss_pred CCCCeEEEEEEeC
Q psy10428 81 VPDETKLLVVDVA 93 (309)
Q Consensus 81 s~~~vvllvv~r~ 93 (309)
.++..+.+++.|.
T Consensus 92 ~~~~~v~l~v~R~ 104 (108)
T 2d92_A 92 VPPGLVHLGICSG 104 (108)
T ss_dssp SCSEEEEEEEECC
T ss_pred CCCCeEEEEEEcC
Confidence 7555556666653
No 16
>3o46_A Maguk P55 subfamily member 7; PDZ domain, structural genomics consortium, SGC, protein BIN; 1.30A {Homo sapiens} SCOP: b.36.1.0
Probab=99.47 E-value=4.5e-13 Score=103.95 Aligned_cols=83 Identities=14% Similarity=0.326 Sum_probs=72.0
Q ss_pred CceEEEEEeeCCCCcceeEEEeccCCCCCeEEEEeCCCCHHHHcC-CCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCCe
Q psy10428 7 PVVRLCHILKWTDFDGYGFNLHGEKGKTGQYIGKVDEGSPAEAAG-LKEGDHIIEVNSVNICNENHNQVVQRIKAVPDET 85 (309)
Q Consensus 7 ~~pR~v~L~K~~~~~G~GFsl~ggk~~~Gi~V~~V~pgSpA~~AG-Lq~GD~Il~VNG~~V~~~sh~dvv~~Lk~s~~~v 85 (309)
...|.|.|.|.. .+|||.+.+.....+++|..|.++|||+++| |++||+|++|||.++.+.+|.++..+|+..++.+
T Consensus 3 ~~~r~v~l~k~~--~~lG~~i~~~~~~~~~~V~~v~~gspA~~aG~L~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~v 80 (93)
T 3o46_A 3 DSVKIIRLVKNR--EPLGATIKKDEQTGAIIVARIMRGGAADRSGLIHVGDELREVNGIPVEDKRPEEIIQILAQSQGAI 80 (93)
T ss_dssp -CCEEEEEEESS--SCCCEEEEECTTTCCEEEEEECTTSHHHHHTCCCTTCEEEEETTEESTTSCHHHHHHHHHHCCEEE
T ss_pred ccEEEEEEEeCC--CCccEEEEecCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeE
Confidence 357999999986 7999999987545689999999999999999 9999999999999999999999999999987644
Q ss_pred EEEEEEe
Q psy10428 86 KLLVVDV 92 (309)
Q Consensus 86 vllvv~r 92 (309)
.+.+.+
T Consensus 81 -~l~v~~ 86 (93)
T 3o46_A 81 -TFKIIP 86 (93)
T ss_dssp -EEEEEC
T ss_pred -EEEEEe
Confidence 444444
No 17
>3b76_A E3 ubiquitin-protein ligase LNX; PDZ, bound ligand, structural genomics, structural genomics consortium, SGC, metal-binding; 1.75A {Homo sapiens}
Probab=99.47 E-value=3e-13 Score=110.69 Aligned_cols=85 Identities=19% Similarity=0.323 Sum_probs=73.0
Q ss_pred CCceEEEEEeeCCCCcceeEEEeccCC----CCCeEEEEeCCCCHHHHcC-CCCCCEEEEECCEEcCCCCHHHHHHHHHh
Q psy10428 6 TPVVRLCHILKWTDFDGYGFNLHGEKG----KTGQYIGKVDEGSPAEAAG-LKEGDHIIEVNSVNICNENHNQVVQRIKA 80 (309)
Q Consensus 6 ~~~pR~v~L~K~~~~~G~GFsl~ggk~----~~Gi~V~~V~pgSpA~~AG-Lq~GD~Il~VNG~~V~~~sh~dvv~~Lk~ 80 (309)
+..+|.|.|.|++ ..+|||++.++.+ ..|++|..|.++|||+++| |++||+|++|||.++.+.+|.+++.+|+.
T Consensus 22 ~~~~~~v~l~k~~-~~~lGf~i~gg~~~~~~~~gv~V~~V~~gspA~~aG~L~~GD~Il~VNg~~v~~~~~~~~~~~l~~ 100 (118)
T 3b76_A 22 SMHEKVVNIQKDP-GESLGMTVAGGASHREWDLPIYVISVEPGGVISRDGRIKTGDILLNVDGVELTEVSRSEAVALLKR 100 (118)
T ss_dssp EEEEEEEEEECCT-TCCCCEEEEECSCSTTCCCCEEEEEECTTSHHHHHCSSCTTCEEEEETTEEGGGSCHHHHHHHHHS
T ss_pred CCCcEEEEEEeCC-CCccCEEEecCCCCCCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHc
Confidence 4578999999874 4899999998853 4589999999999999999 99999999999999999999999999998
Q ss_pred CCCCeEEEEEE
Q psy10428 81 VPDETKLLVVD 91 (309)
Q Consensus 81 s~~~vvllvv~ 91 (309)
.+..+.+.+++
T Consensus 101 ~~~~v~L~v~R 111 (118)
T 3b76_A 101 TSSSIVLKALE 111 (118)
T ss_dssp CCSEEEEEEEE
T ss_pred CCCeEEEEEEE
Confidence 86665554444
No 18
>2dc2_A GOPC, golgi associated PDZ and coiled-coil motif containing isoform B; GOPC PDZ domain, structural protein; NMR {Homo sapiens}
Probab=99.47 E-value=3.3e-13 Score=107.12 Aligned_cols=88 Identities=31% Similarity=0.481 Sum_probs=72.4
Q ss_pred CCCceEEEEEeeCCCCcceeEEEeccCCC-CCeEEEEeCCCCHHHHc-CCCCCCEEEEECCEEcCCCCHHHHHHHHHhCC
Q psy10428 5 KTPVVRLCHILKWTDFDGYGFNLHGEKGK-TGQYIGKVDEGSPAEAA-GLKEGDHIIEVNSVNICNENHNQVVQRIKAVP 82 (309)
Q Consensus 5 ~~~~pR~v~L~K~~~~~G~GFsl~ggk~~-~Gi~V~~V~pgSpA~~A-GLq~GD~Il~VNG~~V~~~sh~dvv~~Lk~s~ 82 (309)
.|..+|.|.|.|.+ ..+|||.+.++... .+++|..|.++|||+++ ||++||+|++|||.++.+.+|.+++.+++..+
T Consensus 6 ~~~~~~~v~l~~~~-~~~lG~~l~~g~~~~~~~~V~~V~~~s~A~~a~gL~~GD~Il~Ing~~v~~~~~~~~~~~l~~~~ 84 (103)
T 2dc2_A 6 GVGPIRKVLLLKED-HEGLGISITGGKEHGVPILISEIHPGQPADRCGGLHVGDAILAVNGVNLRDTKHKEAVTILSQQR 84 (103)
T ss_dssp ---CEEEEEEECCS-SSCCCEEEEEEGGGTEEEEEEEECTTSHHHHHTCCCSSEEEEEETTEESTTSCHHHHHHHHHHCC
T ss_pred CCCCcEEEEEEeCC-CCccCEEEEeccCCCCCEEEEEECCCCHHHHhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Confidence 47788999998864 47999999987543 37999999999999995 89999999999999999999999999999987
Q ss_pred CCeEEEEEEeC
Q psy10428 83 DETKLLVVDVA 93 (309)
Q Consensus 83 ~~vvllvv~r~ 93 (309)
+.+.+.+++..
T Consensus 85 ~~v~l~v~~~~ 95 (103)
T 2dc2_A 85 GEIEFEVVYVA 95 (103)
T ss_dssp SEEEEEEEECC
T ss_pred CcEEEEEEecC
Confidence 76555444443
No 19
>2dkr_A LIN-7 homolog B; LIN-7B, PDZ, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.46 E-value=3.8e-13 Score=103.92 Aligned_cols=86 Identities=33% Similarity=0.516 Sum_probs=73.3
Q ss_pred CCCceEEEEEeeCCCCcceeEEEeccCC-CCCeEEEEeCCCCHHHHcC-CCCCCEEEEECCEEcCCCCHHHHHHHHHhCC
Q psy10428 5 KTPVVRLCHILKWTDFDGYGFNLHGEKG-KTGQYIGKVDEGSPAEAAG-LKEGDHIIEVNSVNICNENHNQVVQRIKAVP 82 (309)
Q Consensus 5 ~~~~pR~v~L~K~~~~~G~GFsl~ggk~-~~Gi~V~~V~pgSpA~~AG-Lq~GD~Il~VNG~~V~~~sh~dvv~~Lk~s~ 82 (309)
.+..+|+|+|.|.. .+|||.+.++.. ..+++|..|.++|||+++| |++||+|++|||.++.+.+|.++..+++..+
T Consensus 2 ~~~~~r~v~l~k~~--~glG~~l~~~~~~~~~~~V~~V~~~spA~~aGgl~~GD~I~~vng~~v~~~~~~~~~~~~~~~~ 79 (93)
T 2dkr_A 2 SSGSSGVVELPKTD--EGLGFNIMGGKEQNSPIYISRVIPGGVADRHGGLKRGDQLLSVNGVSVEGEQHEKAVELLKAAQ 79 (93)
T ss_dssp CSSCSCEEEEECCT--TCCCEEEECSSSSSCCCEEEEECTTSHHHHHCCCCTTCBEEEETTEECTTSCHHHHHHHHHHCC
T ss_pred CCCCCEEEEEEeCC--CCccEEEecccCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Confidence 46789999999976 999999987653 4689999999999999996 9999999999999998889999999998876
Q ss_pred CCeEEEEEEeC
Q psy10428 83 DETKLLVVDVA 93 (309)
Q Consensus 83 ~~vvllvv~r~ 93 (309)
.. +.+.+.|.
T Consensus 80 ~~-v~l~v~r~ 89 (93)
T 2dkr_A 80 GS-VKLVVRSG 89 (93)
T ss_dssp SE-EEEEECCC
T ss_pred Cc-EEEEEEeC
Confidence 54 44555543
No 20
>2f5y_A Regulator of G-protein signalling 3 isoform 1; PDZ domain, RGS-3, human, structural genomics, structural GE consortium, SGC, signaling protein; 2.39A {Homo sapiens} SCOP: b.36.1.1
Probab=99.46 E-value=6e-13 Score=102.98 Aligned_cols=82 Identities=27% Similarity=0.419 Sum_probs=70.5
Q ss_pred CceEEEEEeeCCCCcceeEEEeccCCCCCeEEEEeCCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCCeE
Q psy10428 7 PVVRLCHILKWTDFDGYGFNLHGEKGKTGQYIGKVDEGSPAEAAGLKEGDHIIEVNSVNICNENHNQVVQRIKAVPDETK 86 (309)
Q Consensus 7 ~~pR~v~L~K~~~~~G~GFsl~ggk~~~Gi~V~~V~pgSpA~~AGLq~GD~Il~VNG~~V~~~sh~dvv~~Lk~s~~~vv 86 (309)
.++|+|.|.|+. .+|||.+.+. .+++|..|.++|||+++||+.||+|++|||.++.+.+|.++..+++..+.. +
T Consensus 2 ~~~r~v~l~~~~--~g~G~~l~~~---~~~~V~~V~~~spA~~aGl~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~~-v 75 (91)
T 2f5y_A 2 MRYRQITIPRGK--DGFGFTICCD---SPVRVQAVDSGGPAERAGLQQLDTVLQLNERPVEHWKCVELAHEIRSCPSE-I 75 (91)
T ss_dssp CEEEEEEEECBT--TBTSEEEECS---SSCEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHHTCSSE-E
T ss_pred CceEEEEEEeCC--CCccEEEecC---CCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCe-E
Confidence 468999999987 8999999875 479999999999999999999999999999999888999999999886554 4
Q ss_pred EEEEEeCC
Q psy10428 87 LLVVDVAS 94 (309)
Q Consensus 87 llvv~r~~ 94 (309)
.+.+.|..
T Consensus 76 ~l~v~R~~ 83 (91)
T 2f5y_A 76 ILLVWRMV 83 (91)
T ss_dssp EEEEEECC
T ss_pred EEEEEeCC
Confidence 45555544
No 21
>1i16_A Interleukin 16, LCF; cytokine, lymphocyte chemoattractant factor, PDZ domain; NMR {Homo sapiens} SCOP: b.36.1.2
Probab=99.46 E-value=9.9e-14 Score=114.84 Aligned_cols=85 Identities=25% Similarity=0.411 Sum_probs=75.2
Q ss_pred CceEEEEEeeCCCCcceeEEEeccCC----CCCeEEEEeCCCCHHHHc-CCCCCCEEEEECCEEcCCCCHHHHHHHHHhC
Q psy10428 7 PVVRLCHILKWTDFDGYGFNLHGEKG----KTGQYIGKVDEGSPAEAA-GLKEGDHIIEVNSVNICNENHNQVVQRIKAV 81 (309)
Q Consensus 7 ~~pR~v~L~K~~~~~G~GFsl~ggk~----~~Gi~V~~V~pgSpA~~A-GLq~GD~Il~VNG~~V~~~sh~dvv~~Lk~s 81 (309)
...+.|.|.|.. .||||.|.++.+ ..+++|..|.+++||+++ ||++||+|++|||+++.+.+|++++.+|+..
T Consensus 28 ~~~~~v~l~k~~--~glG~~i~gg~~~~~~~~~i~I~~V~~gs~A~~aggL~~GD~Il~Vng~~v~~~~~~~~~~~l~~~ 105 (130)
T 1i16_A 28 ATVCTVTLEKMS--AGLGFSLEGGKGSLHGDKPLTINRIFKGAASEQSETVQPGDEILQLGGTAMQGLTRFEAWNIIKAL 105 (130)
T ss_dssp EEEEEEEEETTS--SSTTEEEECCCCCSSSCCCCEEEEECSSCCCSSSCCCCTTCCEEECSSCBGGGSCHHHHHHHHHTS
T ss_pred CcEEEEEEEcCC--CccCEEEecCcCCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Confidence 467888999875 899999998875 468999999999999999 7999999999999999999999999999999
Q ss_pred CCCeEEEEEEeC
Q psy10428 82 PDETKLLVVDVA 93 (309)
Q Consensus 82 ~~~vvllvv~r~ 93 (309)
++..+.+++.|.
T Consensus 106 ~~~~v~l~v~r~ 117 (130)
T 1i16_A 106 PDGPVTIVIRRK 117 (130)
T ss_dssp CSSEEEEEEEEE
T ss_pred CCceEEEEEEeC
Confidence 777666777664
No 22
>1kwa_A Hcask/LIN-2 protein; PDZ domain, neurexin, syndecan, receptor clustering, kinase; 1.93A {Homo sapiens} SCOP: b.36.1.1
Probab=99.45 E-value=7.5e-13 Score=102.31 Aligned_cols=84 Identities=18% Similarity=0.257 Sum_probs=70.8
Q ss_pred ceEEEEEeeCCCCcceeEEEeccCCCCCeEEEEeCCCCHHHH-cCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCCeE
Q psy10428 8 VVRLCHILKWTDFDGYGFNLHGEKGKTGQYIGKVDEGSPAEA-AGLKEGDHIIEVNSVNICNENHNQVVQRIKAVPDETK 86 (309)
Q Consensus 8 ~pR~v~L~K~~~~~G~GFsl~ggk~~~Gi~V~~V~pgSpA~~-AGLq~GD~Il~VNG~~V~~~sh~dvv~~Lk~s~~~vv 86 (309)
+.|.|.|.|.+ +.+|||.+.+.. ..+++|..|.++|||++ +||++||+|++|||.++.+++|+++..+|+...+ .+
T Consensus 1 ~~r~V~l~K~~-~~~lG~~i~~~~-~~~~~I~~V~~gspA~~~agL~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~~-~v 77 (88)
T 1kwa_A 1 RSRLVQFQKNT-DEPMGITLKMNE-LNHCIVARIMHGGMIHRQGTLHVGDEIREINGISVANQTVEQLQKMLREMRG-SI 77 (88)
T ss_dssp CCEEEEEEECS-SSCCCEEEECSC-GGGEEEEEECTTSHHHHHTCCCTTCEEEEETTEEGGGSCHHHHHHHHHHCCE-EE
T ss_pred CeEEEEEEeCC-CCceeEEEEeCC-CCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHhcCCC-cE
Confidence 36899999984 489999998742 24799999999999999 7899999999999999988899999999998876 44
Q ss_pred EEEEEeCC
Q psy10428 87 LLVVDVAS 94 (309)
Q Consensus 87 llvv~r~~ 94 (309)
.+.+.+..
T Consensus 78 ~l~v~r~~ 85 (88)
T 1kwa_A 78 TFKIVPSY 85 (88)
T ss_dssp EEEEECCC
T ss_pred EEEEECCc
Confidence 55555543
No 23
>2vwr_A Ligand of NUMB protein X 2; protein-binding, metal-binding, zinc, LNX2_human, zinc-finger, polymorphism, ring finger protein 1; 1.3A {Homo sapiens}
Probab=99.45 E-value=1.2e-12 Score=101.87 Aligned_cols=86 Identities=19% Similarity=0.248 Sum_probs=72.5
Q ss_pred ceEEEEEeeCCCCcceeEEEeccCCCCCeEEEEeCCCCHHHHcC-CCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCCeE
Q psy10428 8 VVRLCHILKWTDFDGYGFNLHGEKGKTGQYIGKVDEGSPAEAAG-LKEGDHIIEVNSVNICNENHNQVVQRIKAVPDETK 86 (309)
Q Consensus 8 ~pR~v~L~K~~~~~G~GFsl~ggk~~~Gi~V~~V~pgSpA~~AG-Lq~GD~Il~VNG~~V~~~sh~dvv~~Lk~s~~~vv 86 (309)
....+.|.|.....+|||.+.++....|++|..|.++|||+++| |++||+|++|||.++.+.+|.++...++..+..+
T Consensus 3 ~~~~v~l~k~~~~~~lG~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~g~~v- 81 (95)
T 2vwr_A 3 EILQVALHKRDSGEQLGIKLVRRTDEPGVFILDLLEGGLAAQDGRLSSNDRVLAINGHDLKYGTPELAAQIIQASGERV- 81 (95)
T ss_dssp EEEEEEEECSSTTCCCCEEEEECSSSCSEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHCCSEE-
T ss_pred EEEEEEEEECCCCCcccEEEEeccCCCCEEEEEeCCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCEE-
Confidence 45778999875457899999888767799999999999999999 9999999999999999999999999998775544
Q ss_pred EEEEEeCC
Q psy10428 87 LLVVDVAS 94 (309)
Q Consensus 87 llvv~r~~ 94 (309)
.+.+.|.+
T Consensus 82 ~l~v~R~~ 89 (95)
T 2vwr_A 82 NLTIARPG 89 (95)
T ss_dssp EEEEEEES
T ss_pred EEEEEcCC
Confidence 44555543
No 24
>2fe5_A Presynaptic protein SAP102; PDZ domain, DLG3, human, structural genomics, structural GEN consortium, SGC, structural protein; HET: GOL; 1.10A {Homo sapiens} SCOP: b.36.1.1 PDB: 2x7z_A 2oqs_A 1qlc_A 2i0l_A
Probab=99.45 E-value=1.1e-12 Score=101.51 Aligned_cols=83 Identities=31% Similarity=0.526 Sum_probs=70.9
Q ss_pred ceEEEEEeeCCCCcceeEEEeccCC------CCCeEEEEeCCCCHHHHcC-CCCCCEEEEECCEEcCCCCHHHHHHHHHh
Q psy10428 8 VVRLCHILKWTDFDGYGFNLHGEKG------KTGQYIGKVDEGSPAEAAG-LKEGDHIIEVNSVNICNENHNQVVQRIKA 80 (309)
Q Consensus 8 ~pR~v~L~K~~~~~G~GFsl~ggk~------~~Gi~V~~V~pgSpA~~AG-Lq~GD~Il~VNG~~V~~~sh~dvv~~Lk~ 80 (309)
..+.|.|.|++ .+|||.+.++.+ ..+++|..|.++|||+++| |++||+|++|||.++.+.++.++..+++.
T Consensus 3 ~~~~v~l~k~~--~g~G~~i~gg~~~~~~~~~~gv~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~ 80 (94)
T 2fe5_A 3 TIMEVNLLKGP--KGLGFSIAGGIGNQHIPGDNSIYITKIIEGGAAQKDGRLQIGDRLLAVNNTNLQDVRHEEAVASLKN 80 (94)
T ss_dssp CEEEEEEECCT--TCSCEEEEECBTSCSBTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCBHHHHHHHHHT
T ss_pred EEEEEEEEECC--CCCCEEEEcccCCCCCCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHc
Confidence 56889999987 899999998754 2489999999999999999 99999999999999988889999999988
Q ss_pred CCCCeEEEEEEeC
Q psy10428 81 VPDETKLLVVDVA 93 (309)
Q Consensus 81 s~~~vvllvv~r~ 93 (309)
.+. .+.+.+.|.
T Consensus 81 ~~~-~v~l~v~R~ 92 (94)
T 2fe5_A 81 TSD-MVYLKVAKP 92 (94)
T ss_dssp CCS-EEEEEEECC
T ss_pred CCC-eEEEEEEcC
Confidence 765 444555554
No 25
>2jik_A Synaptojanin-2 binding protein; transmembrane, outer membrane, mitochondria distribution, PDZ, membrane, scaffold, mitochondrion, membrane protein; 1.35A {Homo sapiens} PDB: 2jin_A
Probab=99.45 E-value=9.3e-13 Score=103.51 Aligned_cols=85 Identities=26% Similarity=0.409 Sum_probs=72.4
Q ss_pred CCceEEEEEeeCCCCcceeEEEeccCC------CCCeEEEEeCCCCHHHHcC-CCCCCEEEEECCEEcCCCCHHHHHHHH
Q psy10428 6 TPVVRLCHILKWTDFDGYGFNLHGEKG------KTGQYIGKVDEGSPAEAAG-LKEGDHIIEVNSVNICNENHNQVVQRI 78 (309)
Q Consensus 6 ~~~pR~v~L~K~~~~~G~GFsl~ggk~------~~Gi~V~~V~pgSpA~~AG-Lq~GD~Il~VNG~~V~~~sh~dvv~~L 78 (309)
.+.+|.|.|.|++ .+|||.+.++.. ..+++|..|.++|||+++| |++||+|++|||.++.+.+|.++..++
T Consensus 5 ~~~~~~v~l~~~~--~~lG~~l~~g~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~ 82 (101)
T 2jik_A 5 LVTEEEINLTRGP--SGLGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILSVNGQDLKNLLHQDAVDLF 82 (101)
T ss_dssp GEEEEEEEEECCT--TCCCEEEEECTTSCSBTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECSSCCHHHHHHHH
T ss_pred CCccEEEEEEeCC--CCCCEEEeccccCCCccCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHH
Confidence 4578999999987 899999998754 2589999999999999999 999999999999999999999999999
Q ss_pred HhCCCCeEEEEEEeC
Q psy10428 79 KAVPDETKLLVVDVA 93 (309)
Q Consensus 79 k~s~~~vvllvv~r~ 93 (309)
+..+.. +.+.+.|.
T Consensus 83 ~~~g~~-v~l~v~R~ 96 (101)
T 2jik_A 83 RNAGYA-VSLRVQHR 96 (101)
T ss_dssp HTCCSE-EEEEEEEE
T ss_pred HhCCCe-EEEEEEeC
Confidence 877544 44555553
No 26
>3l4f_D SH3 and multiple ankyrin repeat domains protein 1; coiled-coil, PDZ, guanine-nucleotide releasing factor, phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus}
Probab=99.44 E-value=4.8e-13 Score=111.29 Aligned_cols=86 Identities=37% Similarity=0.477 Sum_probs=73.0
Q ss_pred CCCceEEEEEeeCCCCcceeEEEeccCCCC-------------CeEEEEeCCCCHHHHcCCCCCCEEEEECCEEcCCCCH
Q psy10428 5 KTPVVRLCHILKWTDFDGYGFNLHGEKGKT-------------GQYIGKVDEGSPAEAAGLKEGDHIIEVNSVNICNENH 71 (309)
Q Consensus 5 ~~~~pR~v~L~K~~~~~G~GFsl~ggk~~~-------------Gi~V~~V~pgSpA~~AGLq~GD~Il~VNG~~V~~~sh 71 (309)
....+|.|.|.|.+ ..+|||+|.++.... |++|..|.++|||+++||+.||+|++|||.+|.+.+|
T Consensus 24 ~~~~~r~v~l~r~~-~~g~Gf~i~g~~~~~~~~~~~~~~~~~~gv~V~~V~~gspA~~aGL~~GD~Il~Vng~~v~~~~~ 102 (132)
T 3l4f_D 24 YIIKEKTVLLQKKD-SEGFGFVLRGAKAQTPIEEFTPTPAFPALQYLESVDEGGVAWRAGLRMGDFLIEVNGQNVVKVGH 102 (132)
T ss_dssp CCCCCCEEEEECCT-TSCCCEEEEEECCSSCCSCCCCCTTSCCSEEEEEECTTSGGGGGTCCTTCEEEEESSSBCTTSCH
T ss_pred cCCCCEEEEEEECC-CCcEeEEEeccCCCCccccccccccCCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCH
Confidence 35678999999963 489999999987532 6899999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCeEEEEEE
Q psy10428 72 NQVVQRIKAVPDETKLLVVD 91 (309)
Q Consensus 72 ~dvv~~Lk~s~~~vvllvv~ 91 (309)
.+++.+|+..+..+.+.+++
T Consensus 103 ~~~~~~l~~~g~~v~l~v~~ 122 (132)
T 3l4f_D 103 RQVVNMIRQGGNTLMVKVVM 122 (132)
T ss_dssp HHHHHHHHHTTTEEEEEEEC
T ss_pred HHHHHHHHcCCCEEEEEEEE
Confidence 99999999876655444433
No 27
>2ego_A General receptor for phosphoinositides 1- associated scaffold protein; PDZ domain, ligand-free, protein binding; 1.80A {Rattus norvegicus} PDB: 2egn_A 2egk_A 2pnt_A
Probab=99.44 E-value=1.3e-12 Score=102.04 Aligned_cols=85 Identities=28% Similarity=0.414 Sum_probs=70.7
Q ss_pred CCceEEEEEeeCCCCcceeEEEec-------cCC-CCCeEEEEeCCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHH
Q psy10428 6 TPVVRLCHILKWTDFDGYGFNLHG-------EKG-KTGQYIGKVDEGSPAEAAGLKEGDHIIEVNSVNICNENHNQVVQR 77 (309)
Q Consensus 6 ~~~pR~v~L~K~~~~~G~GFsl~g-------gk~-~~Gi~V~~V~pgSpA~~AGLq~GD~Il~VNG~~V~~~sh~dvv~~ 77 (309)
|+++|.|.|.|.+ ..+|||.+.+ +.. ..+++|..|.++|||+++||++||+|++|||.++.+.+|.++..+
T Consensus 2 ~~~~r~v~l~k~~-~~~~Gf~l~~~g~~~~~~~~~~~~~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~ 80 (96)
T 2ego_A 2 SQQRKVLTLEKGD-NQTFGFEIQTYGLHHREEQRVEMVTFVARVHESSPAQLAGLTPGDTIASVNGLNVEGIRHREIVDI 80 (96)
T ss_dssp CCCEEEEEEECCT-TCCCSEEEEEEEC-------CCEEEEEEEECTTCHHHHTTCCTTCEEEEETTEECTTCCHHHHHHH
T ss_pred CCccEEEEEEeCC-CCCccEEEEeccccccCCCCCCCCeEEEEECCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHH
Confidence 6789999999985 4699999986 211 247899999999999999999999999999999988889999999
Q ss_pred HHhCCCCeEEEEEEe
Q psy10428 78 IKAVPDETKLLVVDV 92 (309)
Q Consensus 78 Lk~s~~~vvllvv~r 92 (309)
|+..++ .+.+.+.+
T Consensus 81 l~~~~~-~v~l~v~~ 94 (96)
T 2ego_A 81 IKASGN-VLRLETLY 94 (96)
T ss_dssp HHHTTT-EEEEEEEC
T ss_pred HHhCCC-eEEEEEEE
Confidence 988865 44444443
No 28
>1x6d_A Interleukin-16; PDZ domain, lymphocyte chemoattractant factor (LCF), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.2
Probab=99.44 E-value=8.5e-13 Score=107.00 Aligned_cols=90 Identities=14% Similarity=0.272 Sum_probs=77.3
Q ss_pred CCCceEEEEEeeCCCCcceeEEEeccCC--CCCeEEEEeCCCCHHHHcC-CCCCCEEEEECCEEcCCCCHHHHHHHHHhC
Q psy10428 5 KTPVVRLCHILKWTDFDGYGFNLHGEKG--KTGQYIGKVDEGSPAEAAG-LKEGDHIIEVNSVNICNENHNQVVQRIKAV 81 (309)
Q Consensus 5 ~~~~pR~v~L~K~~~~~G~GFsl~ggk~--~~Gi~V~~V~pgSpA~~AG-Lq~GD~Il~VNG~~V~~~sh~dvv~~Lk~s 81 (309)
.....+++.|.|.+ ..+|||.+.++.. ..|++|..|.+++||+++| |++||+|++|||.+|.+.+|.+++.+++..
T Consensus 12 ~~~~~~~v~l~~~~-~~~lG~~i~g~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~l~~~ 90 (119)
T 1x6d_A 12 QLDGIHVTILHKEE-GAGLGFSLAGGADLENKVITVHRVFPNGLASQEGTIQKGNEVLSINGKSLKGTTHHDALAILRQA 90 (119)
T ss_dssp SCTTEEEEEEECCT-TSCCSEEEECCSSSSCSSCEEEEECSSSHHHHHTSSCTTCBCCEETTEECSSCCHHHHHHHHHHT
T ss_pred CCCCeEEEEEEeCC-CCccCEEEeCCCCCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Confidence 35567888888863 4899999998864 3689999999999999999 999999999999999888999999999998
Q ss_pred CCCeEEEEEEeCCe
Q psy10428 82 PDETKLLVVDVASE 95 (309)
Q Consensus 82 ~~~vvllvv~r~~~ 95 (309)
++...++++.|.+.
T Consensus 91 ~~~~~~l~v~R~~~ 104 (119)
T 1x6d_A 91 REPRQAVIVTRKLT 104 (119)
T ss_dssp TSSSEEEEEEECCC
T ss_pred CCCeEEEEEEcCCC
Confidence 88777777777654
No 29
>2iwo_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP-1, HOST-virus interaction, structural genomics consortium, synaptosome, tight junction; 1.7A {Homo sapiens} PDB: 2iwp_A
Probab=99.44 E-value=2.7e-13 Score=110.91 Aligned_cols=87 Identities=20% Similarity=0.269 Sum_probs=70.1
Q ss_pred CCceEEEEEeeCCCCcceeEEEeccCC----CCCeEEEEeCCCCHHHHc-CCCCCCEEEEECCEEcCCCCHHHHHHHHHh
Q psy10428 6 TPVVRLCHILKWTDFDGYGFNLHGEKG----KTGQYIGKVDEGSPAEAA-GLKEGDHIIEVNSVNICNENHNQVVQRIKA 80 (309)
Q Consensus 6 ~~~pR~v~L~K~~~~~G~GFsl~ggk~----~~Gi~V~~V~pgSpA~~A-GLq~GD~Il~VNG~~V~~~sh~dvv~~Lk~ 80 (309)
+..+|.|.|.|++ ..+|||+|.++.+ ..+++|..|.++|||+++ ||++||+|++|||.++.+.+|.+++.+++.
T Consensus 22 ~~~~~~v~l~k~~-~~~lGf~i~gg~~~~~~~~~~~V~~V~~~spA~~aggL~~GD~Il~VnG~~v~~~~~~~~~~~l~~ 100 (120)
T 2iwo_A 22 SMGLRTVEMKKGP-TDSLGISIAGGVGSPLGDVPIFIAMMHPTGVAAQTQKLRVGDRIVTICGTSTEGMTHTQAVNLLKN 100 (120)
T ss_dssp ---CEEEEEEC-----CCCEEEEEEEEETTEEEEEEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTCBHHHHHHHHHH
T ss_pred CCCcEEEEEEcCC-CCCCCEEEecccCCCCCCCCEEEEEECCCCHHHHhCCCCCCCEEEEECCEECCCCCHHHHHHHHHc
Confidence 5678999999985 3599999998753 347999999999999999 899999999999999999999999999999
Q ss_pred CCCCeEEEEEEeCC
Q psy10428 81 VPDETKLLVVDVAS 94 (309)
Q Consensus 81 s~~~vvllvv~r~~ 94 (309)
.++.+ .+++.|.+
T Consensus 101 ~~~~v-~l~v~r~g 113 (120)
T 2iwo_A 101 ASGSI-EMQVVAGG 113 (120)
T ss_dssp CCSEE-EEEEECCT
T ss_pred CCCeE-EEEEEECC
Confidence 87664 45556554
No 30
>1wi4_A Synip, syntaxin binding protein 4; syntaxin4-interacting protein, STXBP4 protein, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: b.36.1.1
Probab=99.44 E-value=1.1e-12 Score=105.58 Aligned_cols=87 Identities=20% Similarity=0.309 Sum_probs=75.1
Q ss_pred CCCceEEEEEeeCCCCcceeEEEeccCC---CCCeEEEEeCCCCHHHHcC-CCCCCEEEEECCEEcCCCCHHHHHHHHHh
Q psy10428 5 KTPVVRLCHILKWTDFDGYGFNLHGEKG---KTGQYIGKVDEGSPAEAAG-LKEGDHIIEVNSVNICNENHNQVVQRIKA 80 (309)
Q Consensus 5 ~~~~pR~v~L~K~~~~~G~GFsl~ggk~---~~Gi~V~~V~pgSpA~~AG-Lq~GD~Il~VNG~~V~~~sh~dvv~~Lk~ 80 (309)
..+..|.|.|.|. .||||+|.++.. ..+++|..|.+++||+++| |++||+|++|||+++.+.+|++++.+|+.
T Consensus 12 ~~~~~~~v~l~k~---~glG~~i~gg~~~~~~~~~~V~~v~~~s~A~~aG~l~~GD~Il~Vng~~~~~~~~~~~~~~l~~ 88 (109)
T 1wi4_A 12 RDPAFRVITVTKE---TGLGLKILGGINRNEGPLVYIHEVIPGGDCYKDGRLKPGDQLVSINKESMIGVSFEEAKSIITR 88 (109)
T ss_dssp CCTTEEEEEECCS---SCCCEEEEECSSSSSCSSEEEEEECTTSHHHHHCSCCTTCBEEEETTSCCTTCCHHHHHHHHHH
T ss_pred CCCcEEEEEEeCC---CccCEEEEeccCCCCCCCEEEEEeCCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHc
Confidence 4567899999885 699999998754 2479999999999999999 99999999999999999999999999999
Q ss_pred CC---CCeEEEEEEeCC
Q psy10428 81 VP---DETKLLVVDVAS 94 (309)
Q Consensus 81 s~---~~vvllvv~r~~ 94 (309)
+. +..+.+.+.|.+
T Consensus 89 ~~~r~~~~~~l~v~R~~ 105 (109)
T 1wi4_A 89 AKLRSESPWEIAFIRSG 105 (109)
T ss_dssp SCCSSSSCEEEEEECCC
T ss_pred cccCCCceEEEEEEeCC
Confidence 87 666667776654
No 31
>2awx_A Synapse associated protein 97; membrane protein, synaptic signaling, trafficking protein; HET: HIS; 1.80A {Rattus norvegicus} PDB: 2g2l_A 2awu_A 2aww_A 3rl8_A
Probab=99.44 E-value=1.3e-12 Score=103.56 Aligned_cols=85 Identities=28% Similarity=0.481 Sum_probs=72.8
Q ss_pred ceEEEEEeeCCCCcceeEEEeccCC------CCCeEEEEeCCCCHHHHcC-CCCCCEEEEECCEEcCCCCHHHHHHHHHh
Q psy10428 8 VVRLCHILKWTDFDGYGFNLHGEKG------KTGQYIGKVDEGSPAEAAG-LKEGDHIIEVNSVNICNENHNQVVQRIKA 80 (309)
Q Consensus 8 ~pR~v~L~K~~~~~G~GFsl~ggk~------~~Gi~V~~V~pgSpA~~AG-Lq~GD~Il~VNG~~V~~~sh~dvv~~Lk~ 80 (309)
..+.|.|.|++ .+|||.+.++.+ ..+++|..|.++|||+++| |++||+|++|||.++.+.++.+++..++.
T Consensus 3 ~~~~v~l~k~~--~glG~~i~gg~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~ 80 (105)
T 2awx_A 3 KIMEIKLIKGP--KGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNSVSLEEVTHEEAVTALKN 80 (105)
T ss_dssp CEEEEEEECBT--TBSSEEEEECBTSCSBTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCBHHHHHHHHHS
T ss_pred eEEEEEEEECC--CCCCEEEeCccCCCCCCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHc
Confidence 56889999987 899999998754 2489999999999999999 99999999999999999999999999988
Q ss_pred CCCCeEEEEEEeCCe
Q psy10428 81 VPDETKLLVVDVASE 95 (309)
Q Consensus 81 s~~~vvllvv~r~~~ 95 (309)
.+ ..+.+.+.|.+.
T Consensus 81 ~~-~~v~l~v~R~~~ 94 (105)
T 2awx_A 81 TS-DFVYLKVAKPTS 94 (105)
T ss_dssp CC-SEEEEEEECCCC
T ss_pred CC-CeEEEEEEcCCC
Confidence 75 444566666543
No 32
>2opg_A Multiple PDZ domain protein; structural protein, structural genomics, structural genomics consortium, SGC; 1.50A {Homo sapiens}
Probab=99.44 E-value=2.5e-12 Score=100.40 Aligned_cols=87 Identities=23% Similarity=0.342 Sum_probs=74.0
Q ss_pred CCceEEEEEeeCCCCcceeEEEeccCCC--CCeEEEEeCCCCHHHHcC-CCCCCEEEEECCEEcCCCCHHHHHHHHHhCC
Q psy10428 6 TPVVRLCHILKWTDFDGYGFNLHGEKGK--TGQYIGKVDEGSPAEAAG-LKEGDHIIEVNSVNICNENHNQVVQRIKAVP 82 (309)
Q Consensus 6 ~~~pR~v~L~K~~~~~G~GFsl~ggk~~--~Gi~V~~V~pgSpA~~AG-Lq~GD~Il~VNG~~V~~~sh~dvv~~Lk~s~ 82 (309)
.++++.|.|.|.. .+|||.+.++... .+++|..|.++|||+++| |++||+|++|||.++.+.+|.++..+++..+
T Consensus 2 ~g~~~~v~l~~~~--~~lG~~l~~~~~~~~~gv~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~~~ 79 (98)
T 2opg_A 2 MGCETTIEISKGR--TGLGLSIVGGSDTLLGAIIIHEVYEEGAACKDGRLWAGDQILEVNGIDLRKATHDEAINVLRQTP 79 (98)
T ss_dssp CCEEEEEEEECBT--TBTCEEEEECTTSTTCSEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHTCC
T ss_pred CCCEEEEEEEECC--CcccEEEecCCCCCCCCEEEEEECCCChHHhCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Confidence 3678999999986 8999999987643 489999999999999999 9999999999999998888999999998876
Q ss_pred CCeEEEEEEeCCe
Q psy10428 83 DETKLLVVDVASE 95 (309)
Q Consensus 83 ~~vvllvv~r~~~ 95 (309)
..+.+.+.|.+.
T Consensus 80 -~~v~l~v~R~~~ 91 (98)
T 2opg_A 80 -QRVRLTLYRDEA 91 (98)
T ss_dssp -SEEEEEEEECSS
T ss_pred -CeEEEEEEcCCC
Confidence 444556666544
No 33
>2kjd_A Sodium/hydrogen exchange regulatory cofactor NHE- RF1; PDZ domain, protein, acetylation, cell projection, disease mutation, membrane; NMR {Homo sapiens}
Probab=99.43 E-value=1.3e-12 Score=106.89 Aligned_cols=90 Identities=51% Similarity=0.764 Sum_probs=78.8
Q ss_pred CCCceEEEEEeeCCCCcceeEEEeccCCCCCeEEEEeCCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCC
Q psy10428 5 KTPVVRLCHILKWTDFDGYGFNLHGEKGKTGQYIGKVDEGSPAEAAGLKEGDHIIEVNSVNICNENHNQVVQRIKAVPDE 84 (309)
Q Consensus 5 ~~~~pR~v~L~K~~~~~G~GFsl~ggk~~~Gi~V~~V~pgSpA~~AGLq~GD~Il~VNG~~V~~~sh~dvv~~Lk~s~~~ 84 (309)
.+..+|+|+|.+.. .+|||.+.+.....+++|..|.++|||+++||+.||+|++|||.++.+.++.++..+|+...+.
T Consensus 6 ~~~~~r~v~l~~~~--~g~G~~l~~~~~~~gv~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~ 83 (128)
T 2kjd_A 6 TMLRPRLCTMKKGP--SGYGFNLHSDKSKPGQFIRSVDPDSPAEASGLRAQDRIVEVNGVCMEGKQHGDVVSAIRAGGDE 83 (128)
T ss_dssp TTCCCEEEEEECCS--SSCCEEEEECSSSCSEEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHHTTCSE
T ss_pred CCCCcEEEEEecCC--CcccEEEEecCCCCCEEEEEeCCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCC
Confidence 46789999999987 8999999988766699999999999999999999999999999999877899999999988666
Q ss_pred eEEEEEEeCCee
Q psy10428 85 TKLLVVDVASEE 96 (309)
Q Consensus 85 vvllvv~r~~~~ 96 (309)
.+.+++.|.+..
T Consensus 84 ~~~l~v~R~g~~ 95 (128)
T 2kjd_A 84 TKLLVVDRETDE 95 (128)
T ss_dssp EEEEEECHHHHH
T ss_pred EEEEEEEeCCcc
Confidence 666777775543
No 34
>2i1n_A Discs, large homolog 3; DLG3, PDZ, PDZ domain, signal transduction, structural genom structural genomics consortium, SGC, signaling protein; 1.85A {Homo sapiens} PDB: 2wl7_A 3rl7_B 1rgr_A* 1kef_A 1zok_A 1iu0_A 1iu2_A
Probab=99.43 E-value=1.8e-12 Score=102.02 Aligned_cols=84 Identities=25% Similarity=0.374 Sum_probs=71.2
Q ss_pred ceEEEEEeeCCCCcceeEEEeccCC------CCCeEEEEeCCCCHHHHcC-CCCCCEEEEECCEEcCCCCHHHHHHHHHh
Q psy10428 8 VVRLCHILKWTDFDGYGFNLHGEKG------KTGQYIGKVDEGSPAEAAG-LKEGDHIIEVNSVNICNENHNQVVQRIKA 80 (309)
Q Consensus 8 ~pR~v~L~K~~~~~G~GFsl~ggk~------~~Gi~V~~V~pgSpA~~AG-Lq~GD~Il~VNG~~V~~~sh~dvv~~Lk~ 80 (309)
..+.|.|.|.. .+|||.+.++.+ ..|++|..|.++|||+++| |++||+|++|||.++.+.+|.+++.+++.
T Consensus 4 ~~~~v~l~k~~--~glG~~i~~g~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~ 81 (102)
T 2i1n_A 4 KYEEIVLERGN--SGLGFSIAGGIDNPHVPDDPGIFITKIIPGGAAAMDGRLGVNDCVLRVNEVDVSEVVHSRAVEALKE 81 (102)
T ss_dssp EEEEEEEECBT--TBTSEEEEECTTSCSSTTCCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECSSCCHHHHHHHHHH
T ss_pred eEEEEEEEECC--CcCCEEEEcccCCCCcCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHc
Confidence 46889999986 899999998754 4589999999999999999 99999999999999999999999999988
Q ss_pred CCCCeEEEEEEeCC
Q psy10428 81 VPDETKLLVVDVAS 94 (309)
Q Consensus 81 s~~~vvllvv~r~~ 94 (309)
.+..+ .+.+.|.+
T Consensus 82 ~g~~v-~l~v~R~~ 94 (102)
T 2i1n_A 82 AGPVV-RLVVRRRQ 94 (102)
T ss_dssp SCSEE-EEEEEEEC
T ss_pred CCCeE-EEEEEeCC
Confidence 65444 45555543
No 35
>2ehr_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}
Probab=99.43 E-value=6.1e-13 Score=107.52 Aligned_cols=86 Identities=29% Similarity=0.426 Sum_probs=74.2
Q ss_pred CCCCCceEEEEEeeCCCCcceeEEEeccCC----------CCCeEEEEeCCCCHHHHcC-CCCCCEEEEECCEEcCCCCH
Q psy10428 3 EDKTPVVRLCHILKWTDFDGYGFNLHGEKG----------KTGQYIGKVDEGSPAEAAG-LKEGDHIIEVNSVNICNENH 71 (309)
Q Consensus 3 e~~~~~pR~v~L~K~~~~~G~GFsl~ggk~----------~~Gi~V~~V~pgSpA~~AG-Lq~GD~Il~VNG~~V~~~sh 71 (309)
...|..+|+|.|.|.+ ..+|||.|.++.. ..+++|..|.++|||+++| |++||+|++|||.++.+.+|
T Consensus 10 ~~~~~~~~~v~l~k~~-~~~lG~~i~gg~~~~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~ 88 (117)
T 2ehr_A 10 FSHWGPPRIVEIFREP-NVSLGISIVGGQTVIKRLKNGEELKGIFIKQVLEDSPAGKTNALKTGDKILEVSGVDLQNASH 88 (117)
T ss_dssp SSCBCCCEEEEECCCS-SSCCCEEECCCCSCCCSSCCCSCCCSEEEEEECSSSTTTSSCSCCTTCEEEEESSCBCTTCCH
T ss_pred cccCCCCEEEEEEeCC-CCccCEEEeCCcccccccccCCCcCCEEEEEeCCCChHHHcCCCCCCCEEEEECCEECCCCCH
Confidence 3568899999999983 4899999988764 2589999999999999999 99999999999999999999
Q ss_pred HHHHHHHHhCCCCeEEEE
Q psy10428 72 NQVVQRIKAVPDETKLLV 89 (309)
Q Consensus 72 ~dvv~~Lk~s~~~vvllv 89 (309)
.+++.+++..+..+.+.+
T Consensus 89 ~~~~~~~~~~g~~v~l~v 106 (117)
T 2ehr_A 89 SEAVEAIKNAGNPVVFIV 106 (117)
T ss_dssp HHHHHHHHTSCSSEEEEE
T ss_pred HHHHHHHHcCCCeEEEEE
Confidence 999999988765554444
No 36
>3gge_A PDZ domain-containing protein GIPC2; structural genomics, structural genomics consort protein binding; 2.60A {Homo sapiens}
Probab=99.42 E-value=1.9e-12 Score=102.80 Aligned_cols=84 Identities=20% Similarity=0.400 Sum_probs=71.9
Q ss_pred CCceEEEEEeeCCCCcceeEEEeccCCCCCeEEEEeCCCCHHHHcC-CCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCC
Q psy10428 6 TPVVRLCHILKWTDFDGYGFNLHGEKGKTGQYIGKVDEGSPAEAAG-LKEGDHIIEVNSVNICNENHNQVVQRIKAVPDE 84 (309)
Q Consensus 6 ~~~pR~v~L~K~~~~~G~GFsl~ggk~~~Gi~V~~V~pgSpA~~AG-Lq~GD~Il~VNG~~V~~~sh~dvv~~Lk~s~~~ 84 (309)
.+++|.|.|.|.+ ++|||+|.++ +...+||..|.+||+|++.| |++||.|++|||+++.+++|.+++++|+..+..
T Consensus 3 ~g~~k~V~l~K~~--~~LG~tI~~~-g~g~~~I~rI~~gg~a~r~g~L~vGD~I~~VNG~~v~g~~h~evv~lLk~~~~g 79 (95)
T 3gge_A 3 KGIEKEVNVYKSE--DSLGLTITDN-GVGYAFIKRIKDGGVIDSVKTICVGDHIESINGENIVGWRHYDVAKKLKELKKE 79 (95)
T ss_dssp CEEEEEEEEECCS--SCCCEEEECS-SSSCCEEEEECTTSHHHHCTTCCTTCEEEEETTEECTTCCHHHHHHHHHHSCTT
T ss_pred CCeEEEEEEEECC--CCceEEEEcC-CCCcEEEEEEcCCChHHhcCCCCCCCEEEEECCEEccCCCHHHHHHHHHhCCCC
Confidence 5688999999987 8999999864 33468999999999999999 999999999999999999999999999997643
Q ss_pred --eEEEEEEe
Q psy10428 85 --TKLLVVDV 92 (309)
Q Consensus 85 --vvllvv~r 92 (309)
+.+.++++
T Consensus 80 ~~~~L~lv~p 89 (95)
T 3gge_A 80 ELFTMKLIEP 89 (95)
T ss_dssp CEEEEEEEEE
T ss_pred CEEEEEEECc
Confidence 44444444
No 37
>1d5g_A Human phosphatase HPTP1E; protein-peptide complex, hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 3lnx_A 3lny_A 3pdz_A 1vj6_A 1gm1_A 1ozi_A
Probab=99.42 E-value=3.3e-12 Score=99.33 Aligned_cols=86 Identities=21% Similarity=0.380 Sum_probs=73.0
Q ss_pred CCceEEEEEeeCCCCcceeEEEeccCC----CCCeEEEEeCCCCHHHHcC-CCCCCEEEEECCEEcCCCCHHHHHHHHHh
Q psy10428 6 TPVVRLCHILKWTDFDGYGFNLHGEKG----KTGQYIGKVDEGSPAEAAG-LKEGDHIIEVNSVNICNENHNQVVQRIKA 80 (309)
Q Consensus 6 ~~~pR~v~L~K~~~~~G~GFsl~ggk~----~~Gi~V~~V~pgSpA~~AG-Lq~GD~Il~VNG~~V~~~sh~dvv~~Lk~ 80 (309)
.+.++.+.|.|.. .+|||.+.++.. ..+++|..|.++|||+++| |++||+|++|||.++.+.+|.++..+++.
T Consensus 3 ~g~~~~v~l~k~~--~~lG~~i~~g~~~~~~~~g~~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~ 80 (96)
T 1d5g_A 3 PGDIFEVELAKND--NSLGISVTGGVNTSVRHGGIYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRN 80 (96)
T ss_dssp TTCEEEEEEECSS--SSCCEEEECCSSSCSSSSCCEEEEECTTSHHHHTTCCCTTCEEEEETTEECTTCCHHHHHHHHHS
T ss_pred CCCEEEEEEEeCC--CCCCEEEECCCCCCCCcCCEEEEEeCCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHc
Confidence 4578999999986 899999998754 2589999999999999999 99999999999999988899999999988
Q ss_pred CCCCeEEEEEEeCC
Q psy10428 81 VPDETKLLVVDVAS 94 (309)
Q Consensus 81 s~~~vvllvv~r~~ 94 (309)
.+ ..+.+.+.|.+
T Consensus 81 ~g-~~v~l~v~R~~ 93 (96)
T 1d5g_A 81 TG-QVVHLLLEKGQ 93 (96)
T ss_dssp CC-SEEEEEEECCS
T ss_pred CC-CeEEEEEEcCC
Confidence 64 44455666543
No 38
>1m5z_A GRIP, AMPA receptor interacting protein; six beta-strands and two alpha-helices, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1
Probab=99.42 E-value=2.6e-12 Score=98.94 Aligned_cols=85 Identities=21% Similarity=0.327 Sum_probs=71.3
Q ss_pred CceEEEEEeeCCCCcceeEEEeccCCCCCeEEEEeCCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCCeE
Q psy10428 7 PVVRLCHILKWTDFDGYGFNLHGEKGKTGQYIGKVDEGSPAEAAGLKEGDHIIEVNSVNICNENHNQVVQRIKAVPDETK 86 (309)
Q Consensus 7 ~~pR~v~L~K~~~~~G~GFsl~ggk~~~Gi~V~~V~pgSpA~~AGLq~GD~Il~VNG~~V~~~sh~dvv~~Lk~s~~~vv 86 (309)
...+.+.|.|.+...+|||.+.++....|++|..|.++|||+++||++||+|++|||.++.+.++.++..+++..+. .+
T Consensus 5 ~~~~~v~l~k~~~~~~~G~~~~~~~~~~gv~V~~V~~~spA~~aGl~~GD~I~~vng~~v~~~~~~~~~~~~~~~g~-~v 83 (91)
T 1m5z_A 5 VELHKVTLYKDSGMEDFGFSVADGLLEKGVYVKNIRPAGPGDLGGLKPYDRLLQVNHVRTRDFDCCLVVPLIAESGN-KL 83 (91)
T ss_dssp CEEEEEEEECCTTCSSSSEEEEECTTSSCEEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHHTSTT-EE
T ss_pred cceEEEEEEECCCCCCccEEEEeccCCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCC-EE
Confidence 46688899987644689999998876679999999999999999999999999999999988888888888887644 44
Q ss_pred EEEEEe
Q psy10428 87 LLVVDV 92 (309)
Q Consensus 87 llvv~r 92 (309)
.+.+.|
T Consensus 84 ~l~v~R 89 (91)
T 1m5z_A 84 DLVISR 89 (91)
T ss_dssp EEEEEE
T ss_pred EEEEEe
Confidence 455554
No 39
>4e34_A Golgi-associated PDZ and coiled-coil motif-contai protein; PDZ-peptide complex, protein transport-inhibitor complex; 1.40A {Homo sapiens} PDB: 4e35_A
Probab=99.42 E-value=1.5e-12 Score=99.51 Aligned_cols=80 Identities=29% Similarity=0.497 Sum_probs=68.9
Q ss_pred CceEEEEEeeCCCCcceeEEEeccCC-CCCeEEEEeCCCCHHHH-cCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCC
Q psy10428 7 PVVRLCHILKWTDFDGYGFNLHGEKG-KTGQYIGKVDEGSPAEA-AGLKEGDHIIEVNSVNICNENHNQVVQRIKAVPDE 84 (309)
Q Consensus 7 ~~pR~v~L~K~~~~~G~GFsl~ggk~-~~Gi~V~~V~pgSpA~~-AGLq~GD~Il~VNG~~V~~~sh~dvv~~Lk~s~~~ 84 (309)
+++|.|.|.|.+ ..+|||.+.++.. ..+++|..|.++|||++ +||++||+|++|||.++.+.+|.+++.+++..+..
T Consensus 1 g~~~~v~l~~~~-~~~lG~~i~~~~~~~~~~~V~~V~~gspA~~~agl~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~ 79 (87)
T 4e34_A 1 GPIRKVLLLKED-HEGLGISITGGKEHGVPILISEIHPGQPADRCGGLHVGDAILAVNGVNLRDTKHKEAVTILSQQRGE 79 (87)
T ss_dssp CCCEEEEEECCT-TBCCCEEEEEEGGGTEEEEEEEECTTSHHHHHSCCCTTEEEEEETTEECTTCCHHHHHHHHHHCCSE
T ss_pred CCEEEEEEEECC-CCcccEEEEccCCCCCCEEEEEECCCCHHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCe
Confidence 468999999975 4799999987743 24689999999999999 69999999999999999999999999999987665
Q ss_pred eEE
Q psy10428 85 TKL 87 (309)
Q Consensus 85 vvl 87 (309)
+.+
T Consensus 80 v~l 82 (87)
T 4e34_A 80 IEF 82 (87)
T ss_dssp EEE
T ss_pred EEE
Confidence 433
No 40
>2q9v_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; Cys Ser mutant, S genomics consortium, SGC, transferase; 2.00A {Homo sapiens}
Probab=99.42 E-value=1.1e-12 Score=100.96 Aligned_cols=83 Identities=24% Similarity=0.418 Sum_probs=70.2
Q ss_pred ceEEEEEeeCCCCcceeEEEeccCC-CCCeEEEEeCCCCHHHHcC-CCCCCEEEEECCEEcCCCCHHHHHHHHHhCCC-C
Q psy10428 8 VVRLCHILKWTDFDGYGFNLHGEKG-KTGQYIGKVDEGSPAEAAG-LKEGDHIIEVNSVNICNENHNQVVQRIKAVPD-E 84 (309)
Q Consensus 8 ~pR~v~L~K~~~~~G~GFsl~ggk~-~~Gi~V~~V~pgSpA~~AG-Lq~GD~Il~VNG~~V~~~sh~dvv~~Lk~s~~-~ 84 (309)
++|.|.|.|.+ .+|||.+.++.. ..+++|..|.++|||+++| |++||+|++|||.++.+.+|.++..+++..+. .
T Consensus 2 ~~~~v~l~~~~--~g~G~~~~~g~~~~~~~~V~~V~~~spA~~aG~L~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~~ 79 (90)
T 2q9v_A 2 MEQDIFLWRKE--TGFGFRILGGNEPGEPIYIGHIVPLGAADTDGRLRSGDELISVDGTPVIGKSHQLVVQLMQQAAKQG 79 (90)
T ss_dssp EEEEEEEECBT--TBCCEEEEECSSTTSCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTSCHHHHHHHHHHHHHHT
T ss_pred CcEEEEEEECC--CccCEEEEccccCCCCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCC
Confidence 57899999987 899999998743 3579999999999999999 99999999999999999999999999987643 2
Q ss_pred eEEEEEEe
Q psy10428 85 TKLLVVDV 92 (309)
Q Consensus 85 vvllvv~r 92 (309)
.+.+.+.|
T Consensus 80 ~v~l~v~R 87 (90)
T 2q9v_A 80 HVNLTVRQ 87 (90)
T ss_dssp EEEEEEEE
T ss_pred eEEEEEEe
Confidence 33455554
No 41
>2vsv_A Rhophilin-2; scaffold protein, RHO GTPase binding, protein-binding, RHOB, nitration, cytoplasm, PDZ domain, CAsp8; 1.82A {Homo sapiens}
Probab=99.41 E-value=1.4e-12 Score=105.50 Aligned_cols=81 Identities=21% Similarity=0.259 Sum_probs=69.4
Q ss_pred CceEEEEEeeCCCCcceeEEEeccCCCCCeEEEEeCCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCCeE
Q psy10428 7 PVVRLCHILKWTDFDGYGFNLHGEKGKTGQYIGKVDEGSPAEAAGLKEGDHIIEVNSVNICNENHNQVVQRIKAVPDETK 86 (309)
Q Consensus 7 ~~pR~v~L~K~~~~~G~GFsl~ggk~~~Gi~V~~V~pgSpA~~AGLq~GD~Il~VNG~~V~~~sh~dvv~~Lk~s~~~vv 86 (309)
..+|.|.|.|++ .+|||.+.+. .+++|..|.++|||+++||+.||+|++|||.++.+.+|.++..+|+..++..+
T Consensus 22 ~~~r~v~l~k~~--~~~G~~l~~~---~~v~V~~V~~gspA~~AGL~~GD~Il~VnG~~v~~~~~~dv~~~i~~~~~~~v 96 (109)
T 2vsv_A 22 SMPRSIRFTAEE--GDLGFTLRGN---APVQVHFLDPYCSASVAGAREGDYIVSIQLVDCKWLTLSEVMKLLKSFGEDEI 96 (109)
T ss_dssp HSCEEEEECCGG--GCCCEEEESS---SSCEEEEECTTSHHHHTTCCTTCEEEEETTEECTTCCHHHHHHHHHTTTTSCE
T ss_pred CCCEEEEEEeCC--CceeEEEeCC---CCeEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCeE
Confidence 368999999986 8999999765 47899999999999999999999999999999977799999999988876533
Q ss_pred EEEEEe
Q psy10428 87 LLVVDV 92 (309)
Q Consensus 87 llvv~r 92 (309)
.+.+.+
T Consensus 97 ~l~V~~ 102 (109)
T 2vsv_A 97 EMKVVS 102 (109)
T ss_dssp EEEEES
T ss_pred EEEEEE
Confidence 444444
No 42
>2jil_A GRIP1 protein, glutamate receptor interacting protein-1; endoplasmic reticulum, postsynaptic membrane, membrane, MEMB protein; 1.5A {Homo sapiens}
Probab=99.41 E-value=1.8e-12 Score=101.06 Aligned_cols=84 Identities=20% Similarity=0.399 Sum_probs=70.4
Q ss_pred ceEEEEEeeCCCCcceeEEEeccCC-----CCCeEEEEeCCCCHHHHcC-CCCCCEEEEECCEEcCCCCHHHHHHHHHhC
Q psy10428 8 VVRLCHILKWTDFDGYGFNLHGEKG-----KTGQYIGKVDEGSPAEAAG-LKEGDHIIEVNSVNICNENHNQVVQRIKAV 81 (309)
Q Consensus 8 ~pR~v~L~K~~~~~G~GFsl~ggk~-----~~Gi~V~~V~pgSpA~~AG-Lq~GD~Il~VNG~~V~~~sh~dvv~~Lk~s 81 (309)
+...|.|.|.. .+|||.+.++.. ..+++|..|.++|||+++| |++||+|++|||.++.+.++.++..+|+..
T Consensus 3 ~~~~v~l~k~~--~~lG~~i~~~~~~~~~~~~~~~V~~V~~~spA~~aG~l~~GD~I~~ing~~v~~~~~~~~~~~l~~~ 80 (97)
T 2jil_A 3 RTVEVTLHKEG--NTFGFVIRGGAHDDRNKSRPVVITSVRPGGPADREGTIKPGDRLLSVDGIRLLGTTHAEAMSILKQC 80 (97)
T ss_dssp EEEEEEEECBT--TBCSEEEEEECCSCC--CEEEEEEEECTTSHHHHHCCCCTTCEEEEETTEECSSCCHHHHHHHHHHS
T ss_pred eEEEEEEEeCC--CccCEEEeCcccCCCCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC
Confidence 45678888875 899999988753 3589999999999999999 999999999999999888899999999884
Q ss_pred CCCeEEEEEEeCC
Q psy10428 82 PDETKLLVVDVAS 94 (309)
Q Consensus 82 ~~~vvllvv~r~~ 94 (309)
+..+.+.+.|++
T Consensus 81 -g~~v~l~v~R~~ 92 (97)
T 2jil_A 81 -GQEAALLIEYDV 92 (97)
T ss_dssp -CSEEEEEEEEEC
T ss_pred -CCeEEEEEEeCC
Confidence 455556666644
No 43
>1qav_A Alpha-1 syntrophin (residues 77-171); beta-finger, heterodimer, membrane protein-oxidoreductase CO; 1.90A {Mus musculus} SCOP: b.36.1.1 PDB: 1z86_A 2pdz_A 2vrf_A
Probab=99.41 E-value=1.8e-12 Score=99.84 Aligned_cols=85 Identities=27% Similarity=0.388 Sum_probs=71.3
Q ss_pred CCceEEEEEeeCCCCcceeEEEeccCC-CCCeEEEEeCCCCHHHHc-CCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCC
Q psy10428 6 TPVVRLCHILKWTDFDGYGFNLHGEKG-KTGQYIGKVDEGSPAEAA-GLKEGDHIIEVNSVNICNENHNQVVQRIKAVPD 83 (309)
Q Consensus 6 ~~~pR~v~L~K~~~~~G~GFsl~ggk~-~~Gi~V~~V~pgSpA~~A-GLq~GD~Il~VNG~~V~~~sh~dvv~~Lk~s~~ 83 (309)
...+|+|.|.|.. ..+|||.+.++.. ..+++|..|.++|||+++ ||++||+|++|||.++.+.+|.+++.+++..+.
T Consensus 2 ~~~~~~v~l~k~~-~~~lG~~i~~~~~~~~g~~V~~V~~~spA~~aggl~~GD~I~~ing~~v~~~~~~~~~~~~~~~~~ 80 (90)
T 1qav_A 2 SLQRRRVTVRKAD-AGGLGISIKGGRENKMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQALKKTGK 80 (90)
T ss_dssp CSSCEEEEEECCT-TTCCCEEEEEEGGGTEEEEEEEECTTSHHHHTTCCCTTEEEEEETTEECTTCCHHHHHHHHHTCCS
T ss_pred CCccEEEEEEeCC-CCCcCEEEEcccCCCCCEEEEEECCCCHHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCC
Confidence 3578999999963 4899999987643 357999999999999999 899999999999999999999999999988755
Q ss_pred CeEEEEEEe
Q psy10428 84 ETKLLVVDV 92 (309)
Q Consensus 84 ~vvllvv~r 92 (309)
.+ .+.+.|
T Consensus 81 ~v-~l~v~r 88 (90)
T 1qav_A 81 EV-VLEVKY 88 (90)
T ss_dssp EE-EEEEEE
T ss_pred eE-EEEEEE
Confidence 44 444443
No 44
>2qg1_A Multiple PDZ domain protein; MPDZ, MUPP1, structural genomics, structural genomics consortium, SGC, signaling protein; 1.40A {Homo sapiens}
Probab=99.41 E-value=2.7e-12 Score=99.08 Aligned_cols=84 Identities=25% Similarity=0.376 Sum_probs=71.9
Q ss_pred ceEEEEEeeCCCCcceeEEEeccCCCCCeEEEEeCCCCHHHHcC-CCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCCeE
Q psy10428 8 VVRLCHILKWTDFDGYGFNLHGEKGKTGQYIGKVDEGSPAEAAG-LKEGDHIIEVNSVNICNENHNQVVQRIKAVPDETK 86 (309)
Q Consensus 8 ~pR~v~L~K~~~~~G~GFsl~ggk~~~Gi~V~~V~pgSpA~~AG-Lq~GD~Il~VNG~~V~~~sh~dvv~~Lk~s~~~vv 86 (309)
..+.+.|.|.+ ..+|||.+.++.+..|++|..|.++|||+++| |++||+|++|||.++.+.++.++..+++..+..+
T Consensus 4 ~~~~v~l~k~~-~~~lG~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~v- 81 (92)
T 2qg1_A 4 DTLTIGLQKKP-GKGLGLSIVGKRNDTGVFVSDIVKGGIADADGRLMQGDQILMVNGEDVRNATQEAVAALLKCSLGTV- 81 (92)
T ss_dssp CEEEEEEECCT-TSCCSEEEECCSSSCSCEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTCCHHHHHHHHHHCCSEE-
T ss_pred eEEEEEEEeCC-CCcccEEEEeccCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeE-
Confidence 46788999864 48999999988766799999999999999999 9999999999999999889999999998876554
Q ss_pred EEEEEeC
Q psy10428 87 LLVVDVA 93 (309)
Q Consensus 87 llvv~r~ 93 (309)
.+.+.|.
T Consensus 82 ~l~v~R~ 88 (92)
T 2qg1_A 82 TLEVGRI 88 (92)
T ss_dssp EEEEECC
T ss_pred EEEEEcc
Confidence 4555554
No 45
>1q3o_A Shank1; PDZ, GKAP, peptide binding protein; 1.80A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1q3p_A 3qjm_A 3qjn_A 3o5n_A*
Probab=99.41 E-value=2.1e-12 Score=103.05 Aligned_cols=85 Identities=38% Similarity=0.491 Sum_probs=70.6
Q ss_pred CCceEEEEEeeCCCCcceeEEEeccCCCC-------------CeEEEEeCCCCHHHHcCCCCCCEEEEECCEEcCCCCHH
Q psy10428 6 TPVVRLCHILKWTDFDGYGFNLHGEKGKT-------------GQYIGKVDEGSPAEAAGLKEGDHIIEVNSVNICNENHN 72 (309)
Q Consensus 6 ~~~pR~v~L~K~~~~~G~GFsl~ggk~~~-------------Gi~V~~V~pgSpA~~AGLq~GD~Il~VNG~~V~~~sh~ 72 (309)
...+|.+.|.|.. ..+|||.|.++.... |++|..|.++|||+++||++||+|++|||.++.+.++.
T Consensus 5 ~~~~~~v~l~~~~-~~g~G~~l~~~~~~~~~~~~~~~~~~~~gv~V~~V~~~spA~~aGl~~GD~I~~vng~~v~~~~~~ 83 (109)
T 1q3o_A 5 IIKEKTVLLQKKD-SEGFGFVLRGAKAQTPIEEFTPTPAFPALQYLESVDEGGVAWRAGLRMGDFLIEVNGQNVVKVGHR 83 (109)
T ss_dssp EEEEEEEEEECCT-TSCCSEEEEESSCCCTTSCCCCCSSCCSSEEEEEECTTSHHHHTTCCTTCEEEEETTEECTTCCHH
T ss_pred ccCcEEEEEEECC-CCCCcEEEEeccCCCCcccccccccCCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHH
Confidence 4578999998653 489999999886532 78999999999999999999999999999999888889
Q ss_pred HHHHHHHhCCCCeEEEEEE
Q psy10428 73 QVVQRIKAVPDETKLLVVD 91 (309)
Q Consensus 73 dvv~~Lk~s~~~vvllvv~ 91 (309)
++..+++..+..+.+.+++
T Consensus 84 ~~~~~l~~~~~~v~l~v~~ 102 (109)
T 1q3o_A 84 QVVNMIRQGGNTLMVKVVM 102 (109)
T ss_dssp HHHHHHHHTTTEEEEEEEE
T ss_pred HHHHHHHhCCCEEEEEEEE
Confidence 9999998875554444433
No 46
>1ufx_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.41 E-value=1.2e-12 Score=104.37 Aligned_cols=85 Identities=21% Similarity=0.298 Sum_probs=70.0
Q ss_pred CCceEEEEEeeCCCCcceeEEEeccCCC--CCeEEEEeCCCCHHHHcC-CCCCCEEEEECCEEcCCCCHHHHHHHHHhC-
Q psy10428 6 TPVVRLCHILKWTDFDGYGFNLHGEKGK--TGQYIGKVDEGSPAEAAG-LKEGDHIIEVNSVNICNENHNQVVQRIKAV- 81 (309)
Q Consensus 6 ~~~pR~v~L~K~~~~~G~GFsl~ggk~~--~Gi~V~~V~pgSpA~~AG-Lq~GD~Il~VNG~~V~~~sh~dvv~~Lk~s- 81 (309)
....|.|.|.|.. .+|||.|.++... +.++|..|.+++||+++| |++||+|++|||.++.+.+|++++.+|+.+
T Consensus 4 g~~~~~v~l~k~~--~glG~~i~gg~~~~~~~~~I~~v~~~s~A~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~ 81 (103)
T 1ufx_A 4 GSSGTLVRVKKSA--ATLGIAIEGGANTRQPLPRIVTIQRGGSAHNCGQLKVGHVILEVNGLTLRGKEHREAARIIAEAF 81 (103)
T ss_dssp CSSSEEEEEECCS--SSCCEEEECBTTSSCSSCEEEEECTTSHHHHHCSSCTTCBCCEETTEECTTCBHHHHHHHHHHHH
T ss_pred CCceEEEEEEcCC--CcCCeEEECCCCCCCCcEEEEEeCCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHHhc
Confidence 3457889998876 8999999988643 345999999999999999 999999999999999999999999999875
Q ss_pred ---CCCeEEEEEEe
Q psy10428 82 ---PDETKLLVVDV 92 (309)
Q Consensus 82 ---~~~vvllvv~r 92 (309)
.+..+.+++.|
T Consensus 82 ~~~~~~~i~l~v~r 95 (103)
T 1ufx_A 82 KTKDRDYIDFLVTE 95 (103)
T ss_dssp HCSSCSEEEEEECC
T ss_pred ccCCCCeEEEEEEE
Confidence 33333444444
No 47
>2byg_A Channel associated protein of synapse-110; DLG2, PDZ, PDZ domain, structural genomics, structural genom consortium, SGC, phosphorylation; 1.85A {Homo sapiens} SCOP: b.36.1.1
Probab=99.40 E-value=2.5e-12 Score=104.57 Aligned_cols=84 Identities=26% Similarity=0.449 Sum_probs=71.5
Q ss_pred CceEEEEEeeCCCCcceeEEEeccCC------CCCeEEEEeCCCCHHHHcC-CCCCCEEEEECCEEcCCCCHHHHHHHHH
Q psy10428 7 PVVRLCHILKWTDFDGYGFNLHGEKG------KTGQYIGKVDEGSPAEAAG-LKEGDHIIEVNSVNICNENHNQVVQRIK 79 (309)
Q Consensus 7 ~~pR~v~L~K~~~~~G~GFsl~ggk~------~~Gi~V~~V~pgSpA~~AG-Lq~GD~Il~VNG~~V~~~sh~dvv~~Lk 79 (309)
...+.|.|.|++ .||||+|.++.+ ..+++|..|.++|||+++| |++||+|++|||.++.+.++.+++.+++
T Consensus 23 ~~~~~v~l~k~~--~glG~~i~gg~~~~~~~~~~gv~V~~V~~gspA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~ 100 (117)
T 2byg_A 23 MTVVEIKLFKGP--KGLGFSIAGGVGNQHIPGDNSIYVTKIIDGGAAQKDGRLQVGDRLLMVNNYSLEEVTHEEAVAILK 100 (117)
T ss_dssp EEEEEEEEECBT--TBSSEEEEECTTSCSBTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHH
T ss_pred CceEEEEEEeCC--CCcCEEEEcccCCCCccCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence 367889999986 899999998753 3589999999999999999 9999999999999999889999999999
Q ss_pred hCCCCeEEEEEEeC
Q psy10428 80 AVPDETKLLVVDVA 93 (309)
Q Consensus 80 ~s~~~vvllvv~r~ 93 (309)
..+..+ .+++.|.
T Consensus 101 ~~g~~v-~l~v~R~ 113 (117)
T 2byg_A 101 NTSEVV-YLKVGKP 113 (117)
T ss_dssp TCCSEE-EEEEEEE
T ss_pred cCCCeE-EEEEEeC
Confidence 875444 4555553
No 48
>3cbz_A Dishevelled-2; PDZ domain, phage derived high affinity ligand, cytoplasm, developmental protein, phosphoprotein, WNT signaling pathway; 1.38A {Homo sapiens} PDB: 3cby_A 3cc0_A 3cbx_A 2rey_A 2f0a_A 1l6o_A 3fy5_A 2kaw_A* 1mc7_A
Probab=99.40 E-value=1e-12 Score=105.22 Aligned_cols=88 Identities=20% Similarity=0.393 Sum_probs=72.3
Q ss_pred CCceEEEEEeeCCCCcceeEEEeccCC---CCCeEEEEeCCCCHHHHcC-CCCCCEEEEECCEEcCCCCHHHHHHHHHhC
Q psy10428 6 TPVVRLCHILKWTDFDGYGFNLHGEKG---KTGQYIGKVDEGSPAEAAG-LKEGDHIIEVNSVNICNENHNQVVQRIKAV 81 (309)
Q Consensus 6 ~~~pR~v~L~K~~~~~G~GFsl~ggk~---~~Gi~V~~V~pgSpA~~AG-Lq~GD~Il~VNG~~V~~~sh~dvv~~Lk~s 81 (309)
+..++.|.|.|.+ ..+|||++.++.. ..+++|..|.++|||+++| |++||+|++|||+++.+.+|.+++.+|+..
T Consensus 3 ~~~~~~v~l~k~~-~~~lG~~i~g~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~ 81 (108)
T 3cbz_A 3 HMNIITVTLNMEK-YNFLGISIVGQSNERGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDMNFENMSNDDAVRVLRDI 81 (108)
T ss_dssp -CCEEEEEECHHH-HCCCCEEEEEECSSTTCCEEEEEEECTTSHHHHHCCCCTTCEEEEETTEETTSCCHHHHHHHHHHH
T ss_pred CceEEEEEEEeCC-CCccCEEEEcCcCCCCCCCEEEEEECCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhc
Confidence 4578999999853 4799999988743 4689999999999999999 999999999999999988999999999877
Q ss_pred --CCCeEEEEEEeCC
Q psy10428 82 --PDETKLLVVDVAS 94 (309)
Q Consensus 82 --~~~vvllvv~r~~ 94 (309)
....+.+++.|..
T Consensus 82 ~~~~~~v~l~v~R~~ 96 (108)
T 3cbz_A 82 VHKPGPIVLTVAKSG 96 (108)
T ss_dssp HTSSSCEEEEEECCC
T ss_pred ccCCCeEEEEEEeCC
Confidence 2233455666543
No 49
>2dls_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; PDZ domain, arhgef11, KIAA0380, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2omj_A 2os6_A
Probab=99.40 E-value=2.5e-12 Score=99.95 Aligned_cols=85 Identities=34% Similarity=0.442 Sum_probs=71.6
Q ss_pred CCCCCceEEEEEeeCCCCcceeEEEeccCCCCCeEEEEeCCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCC
Q psy10428 3 EDKTPVVRLCHILKWTDFDGYGFNLHGEKGKTGQYIGKVDEGSPAEAAGLKEGDHIIEVNSVNICNENHNQVVQRIKAVP 82 (309)
Q Consensus 3 e~~~~~pR~v~L~K~~~~~G~GFsl~ggk~~~Gi~V~~V~pgSpA~~AGLq~GD~Il~VNG~~V~~~sh~dvv~~Lk~s~ 82 (309)
....+.+|+|.|.|+. .+|||.+.+. .+++|..|.+++||+++||++||+|++|||.++...++.+++..++ .
T Consensus 3 ~~~~~~~r~v~l~~~~--~~~G~~l~~~---~g~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~~~-~- 75 (93)
T 2dls_A 3 SGSSGVQRCVIIQKDQ--HGFGFTVSGD---RIVLVQSVRPGGAAMKAGVKEGDRIIKVNGTMVTNSSHLEVVKLIK-S- 75 (93)
T ss_dssp CCCCCCEEEEEEECSS--SSCCEEEECS---SSCEEEEECSSSTTTTTTCCSSCEEEEETTEECSSSCHHHHHHHHT-S-
T ss_pred CCCCCCCEEEEEEeCC--CceeEEEeCC---CCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHhhc-C-
Confidence 4457789999999987 8999999865 4899999999999999999999999999999999888888888776 3
Q ss_pred CCeEEEEEEeCC
Q psy10428 83 DETKLLVVDVAS 94 (309)
Q Consensus 83 ~~vvllvv~r~~ 94 (309)
+..+.+.+.|..
T Consensus 76 g~~v~l~v~R~~ 87 (93)
T 2dls_A 76 GAYVALTLLGSS 87 (93)
T ss_dssp SSEEEEEEECCC
T ss_pred CCEEEEEEEECC
Confidence 455556666643
No 50
>3ngh_A PDZ domain-containing protein 1; adaptor protein, SR-BI, signaling protein; 1.80A {Mus musculus} SCOP: b.36.1.0
Probab=99.40 E-value=1.8e-12 Score=102.80 Aligned_cols=83 Identities=36% Similarity=0.522 Sum_probs=71.5
Q ss_pred eEEEEEeeCCCCcceeEEEeccCCCCCeEEEEeCCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCCeEEE
Q psy10428 9 VRLCHILKWTDFDGYGFNLHGEKGKTGQYIGKVDEGSPAEAAGLKEGDHIIEVNSVNICNENHNQVVQRIKAVPDETKLL 88 (309)
Q Consensus 9 pR~v~L~K~~~~~G~GFsl~ggk~~~Gi~V~~V~pgSpA~~AGLq~GD~Il~VNG~~V~~~sh~dvv~~Lk~s~~~vvll 88 (309)
||.|.|.|.+ ..+|||.+.......|++|..|.++|||+++||++||+|++|||.++.+.+|.++..+++..+..+ .+
T Consensus 2 ~r~v~l~~~~-~~~~G~~l~~~~~~~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~v-~l 79 (106)
T 3ngh_A 2 PRESKLSKQE-GQNYGFFLRIEKDTDGHLIRVIEEGSPAEKAGLLDGDRVLRINGVFVDKEEHAQVVELVRKSGNSV-TL 79 (106)
T ss_dssp CEEEEEECCT-TCCCCCEEECCTTCCSCEEECCCTTSHHHHTTCCTTCEEEEETTEECTTSCHHHHHHHHHHTTTEE-EE
T ss_pred CEEEEEEeCC-CCeeCEEEEEEeCCCCEEEEEeCCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCEE-EE
Confidence 7899999985 478999998887677899999999999999999999999999999999999999999998765544 44
Q ss_pred EEEeC
Q psy10428 89 VVDVA 93 (309)
Q Consensus 89 vv~r~ 93 (309)
.+.|.
T Consensus 80 ~v~r~ 84 (106)
T 3ngh_A 80 LVLDG 84 (106)
T ss_dssp EEECH
T ss_pred EEEEC
Confidence 55553
No 51
>1tp5_A Presynaptic density protein 95; PDZ-peptide ligand complex, peptide binding protein; 1.54A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1tp3_A 1tq3_A 1be9_A 1bfe_A
Probab=99.40 E-value=2.4e-12 Score=104.21 Aligned_cols=88 Identities=30% Similarity=0.503 Sum_probs=74.5
Q ss_pred CCCCCceEEEEEeeCCCCcceeEEEeccCCCCCeEEEEeCCCCHHHHcC-CCCCCEEEEECCEEcCCCCHHHHHHHHHhC
Q psy10428 3 EDKTPVVRLCHILKWTDFDGYGFNLHGEKGKTGQYIGKVDEGSPAEAAG-LKEGDHIIEVNSVNICNENHNQVVQRIKAV 81 (309)
Q Consensus 3 e~~~~~pR~v~L~K~~~~~G~GFsl~ggk~~~Gi~V~~V~pgSpA~~AG-Lq~GD~Il~VNG~~V~~~sh~dvv~~Lk~s 81 (309)
++....+|.|.|.|.. .||||.+.++....+++|..|.++|||+++| |++||+|++|||.++.+.++.+++.+++..
T Consensus 9 ~~~~~~~~~v~l~k~~--~glG~~l~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~ 86 (119)
T 1tp5_A 9 EDIPREPRRIVIHRGS--TGLGFNIVGGEDGEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNA 86 (119)
T ss_dssp SCCCCSCEEEEEECTT--SCCCEEEEECGGGCCEEEEEECTTSHHHHHSCCCTTEEEEEETTEECTTCCHHHHHHHHHTS
T ss_pred CCCCCccEEEEEEECC--CCccEEEecCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC
Confidence 4567789999999987 7899999987655689999999999999999 999999999999999888888888888776
Q ss_pred CCCeEEEEEEeC
Q psy10428 82 PDETKLLVVDVA 93 (309)
Q Consensus 82 ~~~vvllvv~r~ 93 (309)
+..+ .+.+.+.
T Consensus 87 ~~~v-~l~v~r~ 97 (119)
T 1tp5_A 87 GQTV-TIIAQYK 97 (119)
T ss_dssp CSEE-EEEEEEC
T ss_pred CCeE-EEEEEEC
Confidence 5544 4455554
No 52
>2eno_A Synaptojanin-2-binding protein; mitochondrial outer membrane protein 25, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.39 E-value=2.3e-12 Score=104.70 Aligned_cols=85 Identities=26% Similarity=0.409 Sum_probs=72.8
Q ss_pred CCceEEEEEeeCCCCcceeEEEeccCC------CCCeEEEEeCCCCHHHHcC-CCCCCEEEEECCEEcCCCCHHHHHHHH
Q psy10428 6 TPVVRLCHILKWTDFDGYGFNLHGEKG------KTGQYIGKVDEGSPAEAAG-LKEGDHIIEVNSVNICNENHNQVVQRI 78 (309)
Q Consensus 6 ~~~pR~v~L~K~~~~~G~GFsl~ggk~------~~Gi~V~~V~pgSpA~~AG-Lq~GD~Il~VNG~~V~~~sh~dvv~~L 78 (309)
+..+|.|.|.|.+ .+|||.|.++.. ..+++|..|.+++||+++| |++||+|++|||.+|.+.+|.+++.++
T Consensus 15 ~~~~~~v~l~r~~--~~lG~~i~~~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~~~~~~~~ 92 (120)
T 2eno_A 15 LVTEEEINLTRGP--SGLGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILSVNGQDLKNLLHQDAVDLF 92 (120)
T ss_dssp EEEEEEEEEECCS--SSCSEEEECCTTTCSSSSCCSEEEEEECSSSHHHHSCCSCTTCEEEEETTEECCSCCHHHHHHHH
T ss_pred CCceEEEEEEECC--CCCCEEEecccCCccccCCCCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHH
Confidence 4578999999987 899999998653 4589999999999999999 999999999999999999999999999
Q ss_pred HhCCCCeEEEEEEeC
Q psy10428 79 KAVPDETKLLVVDVA 93 (309)
Q Consensus 79 k~s~~~vvllvv~r~ 93 (309)
+..+.. +.+.+.|.
T Consensus 93 ~~~g~~-v~l~v~R~ 106 (120)
T 2eno_A 93 RNAGYA-VSLRVQHR 106 (120)
T ss_dssp HHHCSE-EEEEEEEE
T ss_pred HcCCCe-EEEEEEeC
Confidence 876544 44555554
No 53
>1wha_A KIAA0147 protein, scribble; PDZ domain, cellular signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.39 E-value=1.8e-12 Score=102.79 Aligned_cols=86 Identities=24% Similarity=0.548 Sum_probs=72.2
Q ss_pred CCceEEEEEeeCCCCcceeEEEeccCC-------CCCeEEEEeCCCCHHHHcC-CCCCCEEEEECCEEcCCCCHHHHHHH
Q psy10428 6 TPVVRLCHILKWTDFDGYGFNLHGEKG-------KTGQYIGKVDEGSPAEAAG-LKEGDHIIEVNSVNICNENHNQVVQR 77 (309)
Q Consensus 6 ~~~pR~v~L~K~~~~~G~GFsl~ggk~-------~~Gi~V~~V~pgSpA~~AG-Lq~GD~Il~VNG~~V~~~sh~dvv~~ 77 (309)
..+...+.|.|.. .+|||.|.++.. ..+++|..|.++|||+++| |++||+|++|||.++.+.+|.+++.+
T Consensus 5 ~~~~~~v~l~~~~--~glG~~l~~g~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~ 82 (105)
T 1wha_A 5 SSGRHVACLARSE--RGLGFSIAGGKGSTPYRAGDAGIFVSRIAEGGAAHRAGTLQVGDRVLSINGVDVTEARHDHAVSL 82 (105)
T ss_dssp CCEEEEEEECCCT--TCCSCEEECCTTSCCSSTTCCSCEEEECCTTSSHHHHSSCCTTCEEEEESSCBCTTCCHHHHHHH
T ss_pred CCeeEEEEEEeCC--CccCEEEEeccCCCcccCCCCCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHH
Confidence 3456778888876 789999998764 4689999999999999999 99999999999999988889999999
Q ss_pred HHhCCCCeEEEEEEeCC
Q psy10428 78 IKAVPDETKLLVVDVAS 94 (309)
Q Consensus 78 Lk~s~~~vvllvv~r~~ 94 (309)
|+..+..+ .+.+.|..
T Consensus 83 l~~~g~~v-~l~v~R~~ 98 (105)
T 1wha_A 83 LTAASPTI-ALLLEREA 98 (105)
T ss_dssp HTSCCSCE-EEEEEECC
T ss_pred HHcCCCeE-EEEEEECC
Confidence 98875554 45555543
No 54
>1ihj_A INAD; intermolecular disulfide bond, PDZ domain, signaling protein; 1.80A {Drosophila melanogaster} SCOP: b.36.1.1
Probab=99.39 E-value=3.2e-12 Score=99.72 Aligned_cols=85 Identities=26% Similarity=0.375 Sum_probs=70.7
Q ss_pred CceEEEEEeeCCCCcceeEEEeccCCC-------CCeEEEEeCCCCHHHHcC-CCCCCEEEEECCEEcCCCCHHHHHHHH
Q psy10428 7 PVVRLCHILKWTDFDGYGFNLHGEKGK-------TGQYIGKVDEGSPAEAAG-LKEGDHIIEVNSVNICNENHNQVVQRI 78 (309)
Q Consensus 7 ~~pR~v~L~K~~~~~G~GFsl~ggk~~-------~Gi~V~~V~pgSpA~~AG-Lq~GD~Il~VNG~~V~~~sh~dvv~~L 78 (309)
..++.|.|.|.+ ..+|||.+.++... .+++|..|.++|||+++| |++||+|++|||.++.+.++.++..++
T Consensus 4 e~~~~v~l~k~~-~~glG~~i~~~~~~~~~~~~~~g~~V~~V~~~spA~~aG~L~~GD~I~~ing~~v~~~~~~~~~~~l 82 (98)
T 1ihj_A 4 ELIHMVTLDKTG-KKSFGICIVRGEVKDSPNTKTTGIFIKGIVPDSPAHLCGRLKVGDRILSLNGKDVRNSTEQAVIDLI 82 (98)
T ss_dssp CEEEEEEEECTT-SSSCCEEEEEEEECCSSSCCEEEEEEEEECTTSHHHHHCSCCTTCEEEEETTEECTTCCHHHHHHHH
T ss_pred ceEEEEEEEeCC-CCCcCEEEeccccCCccccCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHH
Confidence 357889999943 38999999876532 379999999999999999 999999999999999988899999999
Q ss_pred HhCCCCeEEEEEEeC
Q psy10428 79 KAVPDETKLLVVDVA 93 (309)
Q Consensus 79 k~s~~~vvllvv~r~ 93 (309)
+.. +..+.+.+.|+
T Consensus 83 ~~~-g~~v~l~v~R~ 96 (98)
T 1ihj_A 83 KEA-DFKIELEIQTF 96 (98)
T ss_dssp HHS-CSEEEEEEEEC
T ss_pred hcC-CCeEEEEEEeC
Confidence 885 44555666664
No 55
>1um1_A KIAA1849 protein, RSGI RUH-007; PDZ domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.39 E-value=4e-12 Score=101.52 Aligned_cols=91 Identities=26% Similarity=0.323 Sum_probs=76.3
Q ss_pred CCCCCceEEEEEeeCCCCcceeEEEeccCC----CCCeEEEEeCCCCHHHHcC-CCCCCEEEEECCEEcCCCCHHHHHHH
Q psy10428 3 EDKTPVVRLCHILKWTDFDGYGFNLHGEKG----KTGQYIGKVDEGSPAEAAG-LKEGDHIIEVNSVNICNENHNQVVQR 77 (309)
Q Consensus 3 e~~~~~pR~v~L~K~~~~~G~GFsl~ggk~----~~Gi~V~~V~pgSpA~~AG-Lq~GD~Il~VNG~~V~~~sh~dvv~~ 77 (309)
....++.+.|.|.|.+ .+|||.+.++.. ..|++|..|.++|||+++| |++||+|++|||.++.+.+|.+++.+
T Consensus 3 s~~~~~~~~v~l~~~~--~glG~~l~~g~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~ 80 (110)
T 1um1_A 3 SGSSGYVFTVELERGP--SGLGMGLIDGMHTHLGAPGLYIQTLLPGSPAAADGRLSLGDRILEVNGSSLLGLGYLRAVDL 80 (110)
T ss_dssp CCSCCCEEEEEEECCT--TCCCEEEEETTTSTTCCSSEEEEEECTTSHHHHHSCCCTTCEEEEESSCBCSSCCHHHHHHH
T ss_pred CCCCCcEEEEEEEECC--CccCEEEeCCcCCCCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHH
Confidence 3456788999999987 899999988653 3589999999999999999 99999999999999998999999999
Q ss_pred HHhCCCCeEEEEEEeCCee
Q psy10428 78 IKAVPDETKLLVVDVASEE 96 (309)
Q Consensus 78 Lk~s~~~vvllvv~r~~~~ 96 (309)
++..+ ..+.+.+.|.+..
T Consensus 81 ~~~~~-~~v~l~v~R~~~~ 98 (110)
T 1um1_A 81 IRHGG-KKMRFLVAKSDVE 98 (110)
T ss_dssp HHTCC-SEEEEEEECCCHH
T ss_pred HHcCC-CeEEEEEEeCCcc
Confidence 98874 4445666666543
No 56
>2kpk_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; PDZ domain, ATP-binding, cell junction, cell membrane; NMR {Homo sapiens} PDB: 2kpl_A
Probab=99.38 E-value=5.4e-12 Score=104.09 Aligned_cols=89 Identities=22% Similarity=0.312 Sum_probs=74.4
Q ss_pred CCCCceEEEEEeeCCCCcceeEEEeccC-CCCCeEEEEeCCCCHHHHcC-CCCCCEEEEECCEEcCCCCHHHHHHHHHhC
Q psy10428 4 DKTPVVRLCHILKWTDFDGYGFNLHGEK-GKTGQYIGKVDEGSPAEAAG-LKEGDHIIEVNSVNICNENHNQVVQRIKAV 81 (309)
Q Consensus 4 ~~~~~pR~v~L~K~~~~~G~GFsl~ggk-~~~Gi~V~~V~pgSpA~~AG-Lq~GD~Il~VNG~~V~~~sh~dvv~~Lk~s 81 (309)
+..++...+.|.|+. .+|||.+.++. ...+++|..|.++|+|+++| |+.||+|++|||.++.+.+|.+++.+|+..
T Consensus 14 ~~~g~~~~v~l~~~~--~g~G~~i~g~~~~~~~v~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~~~~~~~l~~~ 91 (129)
T 2kpk_A 14 ELKGKFIHTKLRKSS--RGFGFTVVGGDEPDEFLQIKSLVLDGPAALDGKMETGDVIVSVNDTCVLGHTHAQVVKIFQSI 91 (129)
T ss_dssp TSCSEEEEEEEEECS--SCCSEEEEEEEETTEEEEEEEECTTSHHHHHSSCCTTCEEEEETTEECTTSCHHHHHHHHHHS
T ss_pred hcCCcEEEEEEEECC--CcccEEEeCccCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Confidence 345677888999976 89999999854 23469999999999999999 999999999999999988999999999987
Q ss_pred C-CCeEEEEEEeCC
Q psy10428 82 P-DETKLLVVDVAS 94 (309)
Q Consensus 82 ~-~~vvllvv~r~~ 94 (309)
. +..+.+.+.|..
T Consensus 92 ~~g~~v~l~v~R~~ 105 (129)
T 2kpk_A 92 PIGASVDLELCRGY 105 (129)
T ss_dssp CTTEEEEEEEEECS
T ss_pred CCCCeEEEEEEeCC
Confidence 5 555556666653
No 57
>1ueq_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.38 E-value=8.1e-12 Score=102.11 Aligned_cols=87 Identities=24% Similarity=0.350 Sum_probs=73.2
Q ss_pred CCceEEEEEeeCCCCcceeEEEeccCC-CCCeEEEEeCCCCHHHHcC-CCCCCEEEEECCEEcCCCCHHHHHHHHHhCC-
Q psy10428 6 TPVVRLCHILKWTDFDGYGFNLHGEKG-KTGQYIGKVDEGSPAEAAG-LKEGDHIIEVNSVNICNENHNQVVQRIKAVP- 82 (309)
Q Consensus 6 ~~~pR~v~L~K~~~~~G~GFsl~ggk~-~~Gi~V~~V~pgSpA~~AG-Lq~GD~Il~VNG~~V~~~sh~dvv~~Lk~s~- 82 (309)
.++.+.|.|.|.. .+|||.+.++.. ..+++|..|.+++||+++| |++||+|++|||+++.+.+|.++..+|+...
T Consensus 17 ~~~~~~v~l~~~~--~glG~~~~~g~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~ 94 (123)
T 1ueq_A 17 KGTFLSTTLKKSN--MGFGFTIIGGDEPDEFLQVKSVIPDGPAAQDGKMETGDVIVYINEVCVLGHTHADVVKLFQSVPI 94 (123)
T ss_dssp CSEEEEEEEECCT--TSCSEEEECCSSSSCCCEEEEECTTSHHHHTSCCCTTCEEEEETTEECTTSCHHHHHHHHHTSCT
T ss_pred CCcEEEEEEEeCC--CceeEEEecccCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCC
Confidence 4566788888876 899999997643 4579999999999999999 9999999999999998889999999999864
Q ss_pred CCeEEEEEEeCC
Q psy10428 83 DETKLLVVDVAS 94 (309)
Q Consensus 83 ~~vvllvv~r~~ 94 (309)
+..+.+.+.|..
T Consensus 95 g~~v~l~v~R~~ 106 (123)
T 1ueq_A 95 GQSVNLVLCRGY 106 (123)
T ss_dssp TCEEEEEEEESC
T ss_pred CCeEEEEEEeCC
Confidence 555566666654
No 58
>2dlu_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}
Probab=99.38 E-value=2.4e-12 Score=102.95 Aligned_cols=86 Identities=23% Similarity=0.385 Sum_probs=73.0
Q ss_pred CCCceEEEEEeeCCCCcceeEEEeccCCCCCeEEEEeCCCCHHHHcC-CCCCCEEEEECCEEcCCCCHHHHHHHHHhCCC
Q psy10428 5 KTPVVRLCHILKWTDFDGYGFNLHGEKGKTGQYIGKVDEGSPAEAAG-LKEGDHIIEVNSVNICNENHNQVVQRIKAVPD 83 (309)
Q Consensus 5 ~~~~pR~v~L~K~~~~~G~GFsl~ggk~~~Gi~V~~V~pgSpA~~AG-Lq~GD~Il~VNG~~V~~~sh~dvv~~Lk~s~~ 83 (309)
.|..+|.|.|.+.. .+|||.+.++.. .+++|..|.+++||+++| |++||+|++|||+++.+.++.++..+++..+.
T Consensus 12 ~~~~~~~v~l~~~~--~~lG~~l~~~~~-~g~~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~~g~ 88 (111)
T 2dlu_A 12 CWGHVEEVELINDG--SGLGFGIVGGKT-SGVVVRTIVPGGLADRDGRLQTGDHILKIGGTNVQGMTSEQVAQVLRNCGN 88 (111)
T ss_dssp SCSEEEEEEEECCS--SCCCEEEECCSS-SSBEEEEECTTSSHHHHTCCCSSCEEEEESSCCCTTSCHHHHHHHHHHHCS
T ss_pred CcCceEEEEEEeCC--CccCEEEeccCC-CCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCC
Confidence 46788999999976 899999987643 489999999999999999 99999999999999988899999999987644
Q ss_pred CeEEEEEEeCC
Q psy10428 84 ETKLLVVDVAS 94 (309)
Q Consensus 84 ~vvllvv~r~~ 94 (309)
.+.+.+.|..
T Consensus 89 -~v~l~v~R~~ 98 (111)
T 2dlu_A 89 -SVRMLVARDP 98 (111)
T ss_dssp -EEEEEEEESC
T ss_pred -eEEEEEEeCC
Confidence 4445555543
No 59
>3bpu_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; structural genomi consortium, SGC, ATP-binding, cell junction; 1.60A {Homo sapiens}
Probab=99.38 E-value=2.6e-12 Score=98.53 Aligned_cols=83 Identities=35% Similarity=0.495 Sum_probs=67.7
Q ss_pred CceEEEEEeeCCCCcceeEEEeccCCCCCeEEEEeCCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHhC-CCCe
Q psy10428 7 PVVRLCHILKWTDFDGYGFNLHGEKGKTGQYIGKVDEGSPAEAAGLKEGDHIIEVNSVNICNENHNQVVQRIKAV-PDET 85 (309)
Q Consensus 7 ~~pR~v~L~K~~~~~G~GFsl~ggk~~~Gi~V~~V~pgSpA~~AGLq~GD~Il~VNG~~V~~~sh~dvv~~Lk~s-~~~v 85 (309)
++.+.|+|.|++ .||||.+.+.....+++|..+ ++|||+ +||++||+|++|||.++.+.+|.++..+++.. .+..
T Consensus 2 ~~~~~v~l~k~~--~g~G~~~~~~~~~~~~~v~~v-~~spA~-aGl~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~g~~ 77 (88)
T 3bpu_A 2 MELITVHIVKGP--MGFGFTIADSPGGGGQRVKQI-VDSPRS-RGLKEGDLIVEVNKKNVQALTHNQVVDMLVESPKGSE 77 (88)
T ss_dssp EEEEEEEEECBT--TBSSCEEEECTTSSSEEEEEC-CC--CC-TTCCTTCEEEEETTEECTTSCHHHHHHHHHTSCTTCE
T ss_pred CcEEEEEEEcCC--CceeEEEEecCCCCcEEEEEe-cCChhH-hCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCCCE
Confidence 467899999987 899999987766668899887 999999 99999999999999999888889999999853 3455
Q ss_pred EEEEEEeC
Q psy10428 86 KLLVVDVA 93 (309)
Q Consensus 86 vllvv~r~ 93 (309)
+.+.+.|.
T Consensus 78 v~l~v~R~ 85 (88)
T 3bpu_A 78 VTLLVQRQ 85 (88)
T ss_dssp EEEEEEEE
T ss_pred EEEEEEeC
Confidence 55565554
No 60
>1nf3_C PAR-6B; semi-CRIB motif, switch I and II, PDZ domain, GTPase binding domain, signaling protein; HET: GNP; 2.10A {Mus musculus} SCOP: b.36.1.1 PDB: 2lc6_A 1ry4_A 1x8s_A 2lc7_A 1rzx_A
Probab=99.37 E-value=2.9e-12 Score=105.63 Aligned_cols=89 Identities=21% Similarity=0.366 Sum_probs=74.8
Q ss_pred CCCceEEEEEeeCCCCcceeEEEeccCC----------CCCeEEEEeCCCCHHHHcC-CCCCCEEEEECCEEcCCCCHHH
Q psy10428 5 KTPVVRLCHILKWTDFDGYGFNLHGEKG----------KTGQYIGKVDEGSPAEAAG-LKEGDHIIEVNSVNICNENHNQ 73 (309)
Q Consensus 5 ~~~~pR~v~L~K~~~~~G~GFsl~ggk~----------~~Gi~V~~V~pgSpA~~AG-Lq~GD~Il~VNG~~V~~~sh~d 73 (309)
.+..+|.|.|.|.+.+.+|||.+.++.. ..|++|..|.++|||+++| |++||+|++|||.++.+.+|.+
T Consensus 26 ~~~~~r~v~l~k~~~~~~lG~~i~~~~~~~~~~~g~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~~~ 105 (128)
T 1nf3_C 26 LPETHRRVRLCKYGTEKPLGFYIRDGSSVRVTPHGLEKVPGIFISRLVPGGLAQSTGLLAVNDEVLEVNGIEVSGKSLDQ 105 (128)
T ss_dssp SCTTCEEEEECCSSTTSCCCEEEEEEEEEEEETTEEEEEEEEEEEEECTTCHHHHHTCCCTTCEEEEETTEESTTCCHHH
T ss_pred CCCccEEEEEEECCCCCCccEEEEccccccccccccCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHH
Confidence 3567899999998545899999987642 2479999999999999999 9999999999999999999999
Q ss_pred HHHHHHhCCCCeEEEEEEeCC
Q psy10428 74 VVQRIKAVPDETKLLVVDVAS 94 (309)
Q Consensus 74 vv~~Lk~s~~~vvllvv~r~~ 94 (309)
++.+|+..+..+ .+.+.+.+
T Consensus 106 ~~~~l~~~~~~v-~l~v~r~~ 125 (128)
T 1nf3_C 106 VTDMMIANSRNL-IITVRPAN 125 (128)
T ss_dssp HHHHHHHTTTSE-EEEEECCC
T ss_pred HHHHHHcCCCeE-EEEEEECC
Confidence 999998876664 45555543
No 61
>2koj_A Partitioning defective 3 homolog; PDZ domain, structural genomics, alternative splicing, cell cycle, cell division, cell junction, coiled coil; NMR {Mus musculus} PDB: 2ogp_A
Probab=99.37 E-value=9.6e-12 Score=99.27 Aligned_cols=89 Identities=27% Similarity=0.381 Sum_probs=73.9
Q ss_pred CCCceEEEEEeeCCCCcceeEEEeccCCC----CCeEEEEeCCCCHHHHcC-CCCCCEEEEECCEEcCCCCHHHHHHHHH
Q psy10428 5 KTPVVRLCHILKWTDFDGYGFNLHGEKGK----TGQYIGKVDEGSPAEAAG-LKEGDHIIEVNSVNICNENHNQVVQRIK 79 (309)
Q Consensus 5 ~~~~pR~v~L~K~~~~~G~GFsl~ggk~~----~Gi~V~~V~pgSpA~~AG-Lq~GD~Il~VNG~~V~~~sh~dvv~~Lk 79 (309)
.....+.+.|.+.. .+|||.+.+.... .+++|..|.++|||+++| |++||+|++|||.++.+.++.++..+|+
T Consensus 8 ~~~~~~~~~l~~~~--~glG~~~~~~~~~~~~~~g~~V~~V~~~spA~~aG~l~~GD~I~~ing~~v~~~~~~~~~~~l~ 85 (111)
T 2koj_A 8 KVGKRLNIQLKKGT--EGLGFSITSRDVTIGGSAPIYVKNILPRGAAIQDGRLKAGDRLIEVNGVDLAGKSQEEVVSLLR 85 (111)
T ss_dssp SSCEEEEEEEECBT--TBTCEEEEECSCSSSSSSCEEEEEECSSSHHHHHCSSCTTCEEEEETTEECTTSCHHHHHHHHH
T ss_pred ccCcEEEEEEEECC--CccCEEEEeccCCCCCCcCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence 34566778888875 8999999877532 589999999999999999 9999999999999999889999999998
Q ss_pred hCC-CCeEEEEEEeCCe
Q psy10428 80 AVP-DETKLLVVDVASE 95 (309)
Q Consensus 80 ~s~-~~vvllvv~r~~~ 95 (309)
... +..+.+.+.|.+.
T Consensus 86 ~~~~g~~v~l~v~R~~~ 102 (111)
T 2koj_A 86 STKMEGTVSLLVFRQEE 102 (111)
T ss_dssp HCCCSSEEEEEEEECCC
T ss_pred hCCCCCeEEEEEEeCCC
Confidence 863 5555666666554
No 62
>2kv8_A RGS12, regulator of G-protein signaling 12; PDZ domain, signaling protein; NMR {Homo sapiens}
Probab=99.37 E-value=5.7e-13 Score=101.14 Aligned_cols=81 Identities=33% Similarity=0.561 Sum_probs=69.3
Q ss_pred CceEEEEEeeCCCCcceeEEEeccCCCCCeEEEEeCCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCCeE
Q psy10428 7 PVVRLCHILKWTDFDGYGFNLHGEKGKTGQYIGKVDEGSPAEAAGLKEGDHIIEVNSVNICNENHNQVVQRIKAVPDETK 86 (309)
Q Consensus 7 ~~pR~v~L~K~~~~~G~GFsl~ggk~~~Gi~V~~V~pgSpA~~AGLq~GD~Il~VNG~~V~~~sh~dvv~~Lk~s~~~vv 86 (309)
+++|.|.|.|+. .+|||.+.+. .+++|..|.++|||+++||++||+|++|||.++.+.++.++..+++..+.. +
T Consensus 1 ~~~r~v~l~~~~--~g~G~~~~~~---~~~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~-v 74 (83)
T 2kv8_A 1 PRVRSVEVARGR--AGYGFTLSGQ---APCVLSCVMRGSPADFVGLRAGDQILAVNEINVKKASHEDVVKLIGKCSGV-L 74 (83)
T ss_dssp CCEEEEEECCCS--SCCSCBCCCS---SSCBCCBCCTTSTTTTTTCCTTCEEEEETTEECSSCCHHHHHHHHTTCSSC-E
T ss_pred CCcEEEEEEeCC--CcccEEEEcC---CCeEEEEeCCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCe-E
Confidence 468999999987 8999998765 379999999999999999999999999999999888889999999776544 4
Q ss_pred EEEEEeC
Q psy10428 87 LLVVDVA 93 (309)
Q Consensus 87 llvv~r~ 93 (309)
.+.+.|+
T Consensus 75 ~l~v~R~ 81 (83)
T 2kv8_A 75 HMVIAEG 81 (83)
T ss_dssp EEEEECC
T ss_pred EEEEEcC
Confidence 4555553
No 63
>2db5_A INAD-like protein; PDZ domain, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ, structural genomics; NMR {Homo sapiens}
Probab=99.37 E-value=1.9e-12 Score=106.38 Aligned_cols=87 Identities=22% Similarity=0.359 Sum_probs=73.3
Q ss_pred CCCceEEEEEeeCCCCcceeEEEeccCCC----CCeEEEEeCCCCHHHHcC-CCCCCEEEEECCEEcC-CCCHHHHHHHH
Q psy10428 5 KTPVVRLCHILKWTDFDGYGFNLHGEKGK----TGQYIGKVDEGSPAEAAG-LKEGDHIIEVNSVNIC-NENHNQVVQRI 78 (309)
Q Consensus 5 ~~~~pR~v~L~K~~~~~G~GFsl~ggk~~----~Gi~V~~V~pgSpA~~AG-Lq~GD~Il~VNG~~V~-~~sh~dvv~~L 78 (309)
.+..++.|.|.|.+ +.+|||.|.++... .|++|..|.+++||+++| |++||+|++|||.+|. +.+|.+++.+|
T Consensus 22 ~~~~~~~v~l~k~~-~~~lG~~i~g~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~~l 100 (128)
T 2db5_A 22 QGRQIEYIDIERPS-TGGLGFSVVALRSQNLGKVDIFVKDVQPGSVADRDQRLKENDQILAINHTPLDQNISHQQAIALL 100 (128)
T ss_dssp TTCEEEEEEEECCS-SSCCCCEEEEEECSSSSCEEEEEECCCTTSHHHHTCCCCSSCBEEEESSCBCSTTSCHHHHHHHH
T ss_pred ccCceEEEEEEECC-CCccCEEEecccCCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCCHHHHHHHH
Confidence 36788999999985 47999999876533 379999999999999999 9999999999999997 88999999999
Q ss_pred HhCCCCeEEEEEEeC
Q psy10428 79 KAVPDETKLLVVDVA 93 (309)
Q Consensus 79 k~s~~~vvllvv~r~ 93 (309)
+..+. .+.+++.|.
T Consensus 101 ~~~~~-~v~l~v~r~ 114 (128)
T 2db5_A 101 QQTTG-SLRLIVARE 114 (128)
T ss_dssp HHCCS-EEEEEEEEC
T ss_pred HcCCC-eEEEEEEcC
Confidence 98654 445555554
No 64
>4amh_A Disks large homolog 1; permutation, protein folding, structural protein; 2.30A {Homo sapiens}
Probab=99.37 E-value=4.5e-12 Score=101.18 Aligned_cols=74 Identities=31% Similarity=0.527 Sum_probs=64.3
Q ss_pred CcceeEEEeccCCC------CCeEEEEeCCCCHHHHcC-CCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCCeEEEEEEe
Q psy10428 20 FDGYGFNLHGEKGK------TGQYIGKVDEGSPAEAAG-LKEGDHIIEVNSVNICNENHNQVVQRIKAVPDETKLLVVDV 92 (309)
Q Consensus 20 ~~G~GFsl~ggk~~------~Gi~V~~V~pgSpA~~AG-Lq~GD~Il~VNG~~V~~~sh~dvv~~Lk~s~~~vvllvv~r 92 (309)
..+|||+|.++.+. .+++|..|.++|||+++| |++||+|++|||.++.+.+|.+++.+++..++.+ .+.+.|
T Consensus 12 ~~~~Gf~i~gG~~~~~~~~~~gv~V~~V~~gspA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~~v-~l~v~R 90 (106)
T 4amh_A 12 SKGLGFSIAGGVGNQHWPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNNVALEEVTHEEAVTALKNTSDFV-YLKVAK 90 (106)
T ss_dssp CCCSCEEEEECTTSCSBTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECSSCCHHHHHHHHHSCCSEE-EEEEEC
T ss_pred CCccCEEEEeccCCccccCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHhCCCCeE-EEEEEe
Confidence 48999999998754 389999999999999999 9999999999999999999999999998886644 555666
Q ss_pred CC
Q psy10428 93 AS 94 (309)
Q Consensus 93 ~~ 94 (309)
.+
T Consensus 91 ~~ 92 (106)
T 4amh_A 91 PG 92 (106)
T ss_dssp CS
T ss_pred CC
Confidence 54
No 65
>2i04_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; PDZ, E6 binding, tumor suppressor, peptide binding protein; 2.15A {Mus musculus}
Probab=99.37 E-value=6.7e-12 Score=95.42 Aligned_cols=79 Identities=25% Similarity=0.386 Sum_probs=66.1
Q ss_pred EEEEeeCCCCcceeEEEeccC-CCCCeEEEEeCCCCHHHHcC-CCCCCEEEEECCEEcCCCCHHHHHHHHHhCC-CCeEE
Q psy10428 11 LCHILKWTDFDGYGFNLHGEK-GKTGQYIGKVDEGSPAEAAG-LKEGDHIIEVNSVNICNENHNQVVQRIKAVP-DETKL 87 (309)
Q Consensus 11 ~v~L~K~~~~~G~GFsl~ggk-~~~Gi~V~~V~pgSpA~~AG-Lq~GD~Il~VNG~~V~~~sh~dvv~~Lk~s~-~~vvl 87 (309)
.+.|.|.+ .||||.+.++. ...+++|..|.++|||+++| |++||+|++|||.++.+.+|.++..+++... +..+.
T Consensus 3 ~v~l~k~~--~g~G~~i~~~~~~~~~~~V~~v~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~g~~v~ 80 (85)
T 2i04_A 3 HTKLRKSS--RGFGFTVVGGDEPDEFLQIKSLVLDGPAALDGKMETGDVIVSVNDTCVLGHTHAQVVKIFQSIPIGASVD 80 (85)
T ss_dssp EEEEECBT--TBSSEEEEECCSTTBCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHTSCTTCEEE
T ss_pred EEEEEECC--CCCCEEEEcccCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCCeEE
Confidence 57788876 89999998754 34579999999999999999 9999999999999998889999999998864 44444
Q ss_pred EEEE
Q psy10428 88 LVVD 91 (309)
Q Consensus 88 lvv~ 91 (309)
+.+.
T Consensus 81 l~v~ 84 (85)
T 2i04_A 81 LELC 84 (85)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 4443
No 66
>1wf8_A Neurabin-I; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.37 E-value=4.5e-12 Score=100.84 Aligned_cols=86 Identities=21% Similarity=0.366 Sum_probs=71.2
Q ss_pred CCCceEEEEEeeCCCCcceeEEEec---cC----CCCCeEEEEeCCCCHHHHcC-CCCCCEEEEECCEEcCCCCHHHHHH
Q psy10428 5 KTPVVRLCHILKWTDFDGYGFNLHG---EK----GKTGQYIGKVDEGSPAEAAG-LKEGDHIIEVNSVNICNENHNQVVQ 76 (309)
Q Consensus 5 ~~~~pR~v~L~K~~~~~G~GFsl~g---gk----~~~Gi~V~~V~pgSpA~~AG-Lq~GD~Il~VNG~~V~~~sh~dvv~ 76 (309)
.....+.|.|.|.. .+|||.+.+ +. ...+++|..|.++|||+++| |++||+|++|||.++.+.+|.+++.
T Consensus 6 ~~~~~~~v~l~k~~--~glG~~i~~~~~g~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~ 83 (107)
T 1wf8_A 6 SGLELFPVELEKDE--DGLGISIIGMGVGADAGLEKLGIFVKTVTEGGAAQRDGRIQVNDQIVEVDGISLVGVTQNFAAT 83 (107)
T ss_dssp CCEEEEEEEEECBT--TBSCEEEEEEEESCCTTCCEEEEEEEEECTTCHHHHHCSSCTTCBEEEETTEECBSCCHHHHHH
T ss_pred CCceEEEEEEEECC--CcccEEEEecCCCCCCCCCCCCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHH
Confidence 34567889999876 899999998 22 23589999999999999999 9999999999999999999999999
Q ss_pred HHHhCCCCeEEEEEEeC
Q psy10428 77 RIKAVPDETKLLVVDVA 93 (309)
Q Consensus 77 ~Lk~s~~~vvllvv~r~ 93 (309)
+++..+..+ .+.+.|.
T Consensus 84 ~~~~~~~~v-~l~v~R~ 99 (107)
T 1wf8_A 84 VLRNTKGNV-RFVIGRE 99 (107)
T ss_dssp HHHHCCSEE-EEEEEEE
T ss_pred HHhcCCCeE-EEEEEeC
Confidence 998875544 4444443
No 67
>1uep_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.37 E-value=1.1e-12 Score=103.97 Aligned_cols=86 Identities=21% Similarity=0.338 Sum_probs=71.8
Q ss_pred CCceEEEEEeeCCCCcceeEEEeccCC-CCCeEEEEeCCCCHHHHcC-CCCCCEEEEECCEEcCCCCHHHHHHHHHhCC-
Q psy10428 6 TPVVRLCHILKWTDFDGYGFNLHGEKG-KTGQYIGKVDEGSPAEAAG-LKEGDHIIEVNSVNICNENHNQVVQRIKAVP- 82 (309)
Q Consensus 6 ~~~pR~v~L~K~~~~~G~GFsl~ggk~-~~Gi~V~~V~pgSpA~~AG-Lq~GD~Il~VNG~~V~~~sh~dvv~~Lk~s~- 82 (309)
...++.|.|.|.. .+|||.+.++.. ..+++|..|.++|||+++| |++||+|++|||++|.+.+|.+++.+|+...
T Consensus 7 ~~~~~~v~l~~~~--~g~G~~i~~g~~~~~~~~V~~V~~~spA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~l~~~~~ 84 (103)
T 1uep_A 7 GYKELDVHLRRME--SGFGFRILGGDEPGQPILIGAVIAMGSADRDGRLHPGDELVYVDGIPVAGKTHRYVIDLMHHAAR 84 (103)
T ss_dssp SEEEECCEEESSS--SSCCEEECCCCSTTSCCBEEEECTTSTTGGGTCCCTTCEEEEETTEECTTSCHHHHHHHHHHHHH
T ss_pred CceEEEEEEEeCC--CccCEEEeeecCCCCCeEEEEeCCCChHHhCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCC
Confidence 4467888999865 899999998653 4689999999999999999 9999999999999999889999999998873
Q ss_pred CCeEEEEEEeC
Q psy10428 83 DETKLLVVDVA 93 (309)
Q Consensus 83 ~~vvllvv~r~ 93 (309)
+..+.+.+.|.
T Consensus 85 g~~v~l~v~R~ 95 (103)
T 1uep_A 85 NGQVNLTVRRK 95 (103)
T ss_dssp HTEEEEEEEEE
T ss_pred CCcEEEEEEeC
Confidence 34445555554
No 68
>1wi2_A Riken cDNA 2700099C19; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1
Probab=99.37 E-value=8.3e-12 Score=98.93 Aligned_cols=85 Identities=31% Similarity=0.435 Sum_probs=71.9
Q ss_pred CCceEEEEEeeCCCCcceeEEEeccCC-CCCeEEEEeCCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCC
Q psy10428 6 TPVVRLCHILKWTDFDGYGFNLHGEKG-KTGQYIGKVDEGSPAEAAGLKEGDHIIEVNSVNICNENHNQVVQRIKAVPDE 84 (309)
Q Consensus 6 ~~~pR~v~L~K~~~~~G~GFsl~ggk~-~~Gi~V~~V~pgSpA~~AGLq~GD~Il~VNG~~V~~~sh~dvv~~Lk~s~~~ 84 (309)
...+|.|.|.|.+ ..+|||.+.++.. ..+++|..|.+++||+++||++||+|++|||..+.+.+|.+++.+|+. +.
T Consensus 13 ~~~~~~v~l~k~~-~~~lG~~~~~~~~~~~g~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~l~~-~~- 89 (104)
T 1wi2_A 13 QFLPRIVTLKKPP-GAQLGFNIRGGKASQLGIFISKVIPDSDAHRAGLQEGDQVLAVNDVDFQDIEHSKAVEILKT-AR- 89 (104)
T ss_dssp SSCCEEEEECCCT-TCCCSEEEECCSSSCCCCEEEEECTTSHHHHHTCCTTCEEEEETTEECSSCCHHHHHHHHHH-SS-
T ss_pred CCCCEEEEEEeCC-CCCccEEEEcccCCCCCEEEEEeCCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHhC-CC-
Confidence 3478999999985 4789999998653 358999999999999999999999999999999988889999999988 33
Q ss_pred eEEEEEEeC
Q psy10428 85 TKLLVVDVA 93 (309)
Q Consensus 85 vvllvv~r~ 93 (309)
.+.+.+.+.
T Consensus 90 ~v~l~v~r~ 98 (104)
T 1wi2_A 90 EISMRVRFF 98 (104)
T ss_dssp SEEEEEECC
T ss_pred EEEEEEEEC
Confidence 445566654
No 69
>1n7e_A AMPA receptor interacting protein GRIP; PDZ, protein binding; 1.50A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1n7f_A
Probab=99.37 E-value=1e-11 Score=96.94 Aligned_cols=85 Identities=18% Similarity=0.357 Sum_probs=70.4
Q ss_pred CceEEEEEeeCCCCcceeEEEeccCCC-CCeEEEEeCCCCHHHHcC-CCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCC
Q psy10428 7 PVVRLCHILKWTDFDGYGFNLHGEKGK-TGQYIGKVDEGSPAEAAG-LKEGDHIIEVNSVNICNENHNQVVQRIKAVPDE 84 (309)
Q Consensus 7 ~~pR~v~L~K~~~~~G~GFsl~ggk~~-~Gi~V~~V~pgSpA~~AG-Lq~GD~Il~VNG~~V~~~sh~dvv~~Lk~s~~~ 84 (309)
...+.+.|.+.. .+|||.+.+.... .+++|..|.++|||+++| |++||+|++|||.++.+.+|.++..+++.. +.
T Consensus 4 ~~~~~v~l~~~~--~~lG~~i~~~~~~~~~~~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~~-g~ 80 (97)
T 1n7e_A 4 AIIYTVELKRYG--GPLGITISGTEEPFDPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQMA-GE 80 (97)
T ss_dssp CCEEEEEEECTT--SCCCEEEECCSSTTSCCEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTCCHHHHHHHHHTC-CS
T ss_pred ceEEEEEEEeCC--CCcCEEEEcccCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC-CC
Confidence 456778887765 7799999877532 589999999999999999 999999999999999888999999999854 44
Q ss_pred eEEEEEEeCC
Q psy10428 85 TKLLVVDVAS 94 (309)
Q Consensus 85 vvllvv~r~~ 94 (309)
.+.+.+.|.+
T Consensus 81 ~v~l~v~R~~ 90 (97)
T 1n7e_A 81 TVTLKIKKQT 90 (97)
T ss_dssp EEEEEEECCC
T ss_pred eEEEEEEeCC
Confidence 5556666654
No 70
>2r4h_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; transferase, STRU genomics, structural genomics consortium, SGC, ATP-binding; HET: HIS; 2.05A {Homo sapiens}
Probab=99.37 E-value=6.8e-12 Score=100.94 Aligned_cols=86 Identities=24% Similarity=0.427 Sum_probs=71.9
Q ss_pred CCceEEEEEeeCCCCcceeEEEeccCC-CCCeEEEEeCCCCHHHHcC-CCCCCEEEEECCEEcCCCCHHHHHHHHHhCCC
Q psy10428 6 TPVVRLCHILKWTDFDGYGFNLHGEKG-KTGQYIGKVDEGSPAEAAG-LKEGDHIIEVNSVNICNENHNQVVQRIKAVPD 83 (309)
Q Consensus 6 ~~~pR~v~L~K~~~~~G~GFsl~ggk~-~~Gi~V~~V~pgSpA~~AG-Lq~GD~Il~VNG~~V~~~sh~dvv~~Lk~s~~ 83 (309)
...++.+.|.|+. .||||.+.++.. ..+++|..|.++|||+++| |++||+|++|||.++.+.++.+++.+++..+.
T Consensus 22 ~~~~~~v~l~~~~--~glG~~l~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~g~ 99 (112)
T 2r4h_A 22 SMDFYTVELERGA--KGFGFSLRGGREYNMDLYVLRLAEDGPAERSGKMRIGDEILEINGETTKNMKHSRAIELIKNGGR 99 (112)
T ss_dssp -CCEEEEEEECBT--TBTSEEEEECGGGTCCEEEEEECTTSHHHHTTCCCTTCEEEEETTEECTTCCHHHHHHHHHTTTT
T ss_pred CCceEEEEEEcCC--CccCEEEeccccCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCC
Confidence 3567899999986 799999987742 4689999999999999999 99999999999999998899999999987644
Q ss_pred CeEEEEEEeCC
Q psy10428 84 ETKLLVVDVAS 94 (309)
Q Consensus 84 ~vvllvv~r~~ 94 (309)
.+.+.+.|.+
T Consensus 100 -~v~l~v~R~~ 109 (112)
T 2r4h_A 100 -RVRLFLKRGE 109 (112)
T ss_dssp -EEEEEEECCE
T ss_pred -eEEEEEEeCC
Confidence 4455565543
No 71
>2uzc_A Human pdlim5, PDZ and LIM domain 5; metal-binding, enigma homolog, phosphorylation, signaling PR LIM domain, PDZ domain; 1.5A {Homo sapiens}
Probab=99.36 E-value=7.5e-12 Score=95.77 Aligned_cols=83 Identities=19% Similarity=0.313 Sum_probs=68.0
Q ss_pred ceEEEEEeeCCCCcceeEEEeccCC-CCCeEEEEeCCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCCeE
Q psy10428 8 VVRLCHILKWTDFDGYGFNLHGEKG-KTGQYIGKVDEGSPAEAAGLKEGDHIIEVNSVNICNENHNQVVQRIKAVPDETK 86 (309)
Q Consensus 8 ~pR~v~L~K~~~~~G~GFsl~ggk~-~~Gi~V~~V~pgSpA~~AGLq~GD~Il~VNG~~V~~~sh~dvv~~Lk~s~~~vv 86 (309)
.+..+.| +++ .+|||.+.++.. ..+++|..|.++|||+++||++||+|++|||.++.+.++.++..+++.. +..+
T Consensus 3 ~~~~v~l-~~~--~~~G~~l~~g~~~~~~~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~~~~~-g~~v 78 (88)
T 2uzc_A 3 SNYSVSL-VGP--APWGFRLQGGKDFNMPLTISSLKDGGKAAQANVRIGDVVLSIDGINAQGMTHLEAQNKIKGC-TGSL 78 (88)
T ss_dssp CEEEEEE-ESS--SCCCEEEEEEGGGTEEEEEEEECTTSHHHHTTCCTTCEEEEETTEECTTCCHHHHHHHHHTC-CSEE
T ss_pred cEEEEEE-cCC--CcccEEEECcCCCCCCeEEEEECCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhC-CCeE
Confidence 3566777 555 799999998654 3479999999999999999999999999999999888889999999877 4444
Q ss_pred EEEEEeCC
Q psy10428 87 LLVVDVAS 94 (309)
Q Consensus 87 llvv~r~~ 94 (309)
.+.+.|.+
T Consensus 79 ~l~v~R~g 86 (88)
T 2uzc_A 79 NMTLQRES 86 (88)
T ss_dssp EEEEECCC
T ss_pred EEEEEeCC
Confidence 55666543
No 72
>2daz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}
Probab=99.35 E-value=6.3e-12 Score=102.78 Aligned_cols=86 Identities=23% Similarity=0.431 Sum_probs=73.5
Q ss_pred CCceEEEEEeeCCCCcceeEEEeccCCC--CCeEEEEeCCCCHHHHcC-CCCCCEEEEECCEEcCCCCHHHHHHHHHhCC
Q psy10428 6 TPVVRLCHILKWTDFDGYGFNLHGEKGK--TGQYIGKVDEGSPAEAAG-LKEGDHIIEVNSVNICNENHNQVVQRIKAVP 82 (309)
Q Consensus 6 ~~~pR~v~L~K~~~~~G~GFsl~ggk~~--~Gi~V~~V~pgSpA~~AG-Lq~GD~Il~VNG~~V~~~sh~dvv~~Lk~s~ 82 (309)
.++.+.|.|.|.. .+|||.+.++... .+++|..|.++|||+++| |++||+|++|||.++.+.+|.+++.+++..+
T Consensus 23 ~~~~~~v~l~k~~--~glG~~l~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~Ing~~v~~~~~~~~~~~~~~~~ 100 (124)
T 2daz_A 23 PGELHIIELEKDK--NGLGLSLAGNKDRSRMSIFVVGINPEGPAAADGRMRIGDELLEINNQILYGRSHQNASAIIKTAP 100 (124)
T ss_dssp SSEEEEEEEECCS--SCCCEEEECBSSTTSCCEEEEEECTTSHHHHHTCCCTTCEECEESSCBCTTSCHHHHHHHHHHSC
T ss_pred CCceEEEEEEeCC--CccCEEEeccCCCCcCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC
Confidence 4567899999986 8999999987543 589999999999999999 9999999999999999999999999998886
Q ss_pred CCeEEEEEEeCC
Q psy10428 83 DETKLLVVDVAS 94 (309)
Q Consensus 83 ~~vvllvv~r~~ 94 (309)
..+ .+++.|.+
T Consensus 101 ~~v-~l~v~R~~ 111 (124)
T 2daz_A 101 SKV-KLVFIRNE 111 (124)
T ss_dssp SEE-EEEEEECT
T ss_pred CeE-EEEEEeCC
Confidence 644 45555554
No 73
>3hpk_A Protein interacting with PRKCA 1; oxidized, PDZ domain, kinase, protein binding; 2.20A {Rattus norvegicus} PDB: 3hpm_A
Probab=99.35 E-value=9.9e-12 Score=101.62 Aligned_cols=84 Identities=24% Similarity=0.275 Sum_probs=72.2
Q ss_pred CceEEEEEeeCCCCcceeEEEeccCC-CCCeEEEEeCCCCHHHHcC-CCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCC
Q psy10428 7 PVVRLCHILKWTDFDGYGFNLHGEKG-KTGQYIGKVDEGSPAEAAG-LKEGDHIIEVNSVNICNENHNQVVQRIKAVPDE 84 (309)
Q Consensus 7 ~~pR~v~L~K~~~~~G~GFsl~ggk~-~~Gi~V~~V~pgSpA~~AG-Lq~GD~Il~VNG~~V~~~sh~dvv~~Lk~s~~~ 84 (309)
-.+|.+.|.|.. ..+|||.+.++.. ..+++|..|.++|||+++| |++||+|++|||.++.+.+|.++..+++..++.
T Consensus 18 ~~~~~v~l~k~~-~~~lG~~i~gg~~~~~~~~V~~v~~gspA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~l~~~~~~ 96 (125)
T 3hpk_A 18 TVPGKVTLQKDA-QNLIGISIGGGAQYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGE 96 (125)
T ss_dssp EEEEEEEEECCT-TSCCCEEEEECSSCCSSEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHSCSE
T ss_pred CCCeEEEEEeCC-CCCcCEEEeccCCCCCCEEEEEeCCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCe
Confidence 367889999875 4789999998864 3579999999999999999 999999999999999989999999999998776
Q ss_pred eEEEEEEe
Q psy10428 85 TKLLVVDV 92 (309)
Q Consensus 85 vvllvv~r 92 (309)
+ .+.+.+
T Consensus 97 v-~l~v~r 103 (125)
T 3hpk_A 97 V-TIHYNK 103 (125)
T ss_dssp E-EEEEEE
T ss_pred E-EEEEEE
Confidence 4 444444
No 74
>1ujd_A KIAA0559 protein; PDZ domain, structural genomics, human cDNA, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.35 E-value=6.1e-12 Score=101.98 Aligned_cols=89 Identities=25% Similarity=0.332 Sum_probs=72.9
Q ss_pred CCceEEEEEeeCCC-----CcceeEEEeccCCC------CCeEEEEeCCCCHHHHcC-CCCCCEEEEECCEEcCCCCHHH
Q psy10428 6 TPVVRLCHILKWTD-----FDGYGFNLHGEKGK------TGQYIGKVDEGSPAEAAG-LKEGDHIIEVNSVNICNENHNQ 73 (309)
Q Consensus 6 ~~~pR~v~L~K~~~-----~~G~GFsl~ggk~~------~Gi~V~~V~pgSpA~~AG-Lq~GD~Il~VNG~~V~~~sh~d 73 (309)
....+.+.|.|... ..+|||+|.++... .+++|..|.++|||+++| |++||+|++|||.++.+.+|.+
T Consensus 10 ~~~~~~v~l~r~~~~~~~~~~glG~~i~g~~~~~~~~~~~g~~V~~v~~~s~A~~aG~L~~GD~Il~vng~~v~~~~~~~ 89 (117)
T 1ujd_A 10 IFPHARIKITRDSKDHTVSGNGLGIRIVGGKEIPGHSGEIGAYIAKILPGGSAEQTGKLMEGMQVLEWNGIPLTSKTYEE 89 (117)
T ss_dssp SSCEEEEEECCCSSSSCSSCCSCSEEEEEEEECSSSSSCEEEEEEEECTTCHHHHHSSCCTTCEEEEETTEECTTCCHHH
T ss_pred CCceEEEEEEecCcccCCCCCcccEEEeCCCCCCcccCCcCEEEEEECCCCHHHHcCCCCCCCEEEEECCEEcCCCCHHH
Confidence 34667888888751 37899999887632 379999999999999999 9999999999999999999999
Q ss_pred HHHHHHhCCCCeEEEEEEeCCe
Q psy10428 74 VVQRIKAVPDETKLLVVDVASE 95 (309)
Q Consensus 74 vv~~Lk~s~~~vvllvv~r~~~ 95 (309)
++.+|+..+.. +.+++.|+..
T Consensus 90 ~~~~l~~~~~~-v~l~v~R~~~ 110 (117)
T 1ujd_A 90 VQSIISQQSGE-AEICVRLDLN 110 (117)
T ss_dssp HHHHHSCCSSC-EEEEEESSCC
T ss_pred HHHHHhcCCCE-EEEEEEECCc
Confidence 99999886554 4566666543
No 75
>2yuy_A RHO GTPase activating protein 21; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.35 E-value=5.9e-13 Score=109.35 Aligned_cols=90 Identities=28% Similarity=0.361 Sum_probs=74.4
Q ss_pred CCCCCCceEEEEEeeCCCCcceeEEEeccC-----------------------------CCCCeEEEEeCCCCHHHHcCC
Q psy10428 2 SEDKTPVVRLCHILKWTDFDGYGFNLHGEK-----------------------------GKTGQYIGKVDEGSPAEAAGL 52 (309)
Q Consensus 2 ~e~~~~~pR~v~L~K~~~~~G~GFsl~ggk-----------------------------~~~Gi~V~~V~pgSpA~~AGL 52 (309)
+...++.+|+|.|.|.. .||||.|.+.. ...+++|..|.+++||+++||
T Consensus 2 ~~~~~~~~r~v~l~r~~--~g~Gf~l~~~t~y~~~~~~~~~~~~~~~G~~~G~~~~~~~~~~gv~V~~V~~~spA~~aGL 79 (126)
T 2yuy_A 2 SSGSSGGPKTVTLKRTS--QGFGFTLRHFIVYPPESAIQFSYKDEENGNRGGKQRNRLEPMDTIFVKQVKEGGPAFEAGL 79 (126)
T ss_dssp CCSCSSSCCCEEEECCS--SSCSCCBCCCCCCCCSSCCCSCSSSCCCCSCCCTTSCCCCCCCCCCBCCCCSSSHHHHHTC
T ss_pred CCCCCCCCEEEEEEECC--CCcceeecCccccCCHHHHHHHHHhhcCcceeceeeecccCCCCEEEEEECCCChHHHcCC
Confidence 35678999999999987 89999997510 124689999999999999999
Q ss_pred CCCCEEEEECCEEcCCCCHHHHHHHHHhCCCCeEEEEEEeCC
Q psy10428 53 KEGDHIIEVNSVNICNENHNQVVQRIKAVPDETKLLVVDVAS 94 (309)
Q Consensus 53 q~GD~Il~VNG~~V~~~sh~dvv~~Lk~s~~~vvllvv~r~~ 94 (309)
++||+|++|||.+|.+.+|.+++.+|+..+ ..+.+.+.|.+
T Consensus 80 ~~GD~I~~ing~~v~~~~~~~~~~~l~~~g-~~v~l~v~r~~ 120 (126)
T 2yuy_A 80 CTGDRIIKVNGESVIGKTYSQVIALIQNSD-TTLELSVMPKD 120 (126)
T ss_dssp CSSCCCCEETTEECSSCCHHHHHHHHHTCT-TEEEEECCCCC
T ss_pred CCCCEEEEECCEECCCCCHHHHHHHHHcCC-CEEEEEEEECC
Confidence 999999999999998889999999999874 44455555543
No 76
>2djt_A Unnamed protein product; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.35 E-value=7.5e-12 Score=98.79 Aligned_cols=87 Identities=23% Similarity=0.333 Sum_probs=72.3
Q ss_pred CCCceEEEEEeeCCCCcceeEEEeccCC---CCCeEEEEeCCCCHHHHcC-CCCCCEEEEECCEEcCCCCHHHHHHHHHh
Q psy10428 5 KTPVVRLCHILKWTDFDGYGFNLHGEKG---KTGQYIGKVDEGSPAEAAG-LKEGDHIIEVNSVNICNENHNQVVQRIKA 80 (309)
Q Consensus 5 ~~~~pR~v~L~K~~~~~G~GFsl~ggk~---~~Gi~V~~V~pgSpA~~AG-Lq~GD~Il~VNG~~V~~~sh~dvv~~Lk~ 80 (309)
....++.+.|.+.. .+|||.+.++.. ..+++|..|.+++||+++| |++||+|++|||.++.+.++.+++.+++.
T Consensus 8 ~~~~~~~v~l~~~~--~g~G~~l~~~~~~~~~~~v~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~ 85 (104)
T 2djt_A 8 QASGHFSVELVRGY--AGFGLTLGGGRDVAGDTPLAVRGLLKDGPAQRCGRLEVGDLVLHINGESTQGLTHAQAVERIRA 85 (104)
T ss_dssp SCCCCEEEEEECCS--SSCCEEEECCEETTEECCCEEEEECTTCHHHHHCSCCTTCBEEEETTEECTTCCHHHHHHHHHH
T ss_pred CCCceEEEEEEeCC--CCccEEEEeccCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHc
Confidence 34567889999876 899999988542 3589999999999999999 99999999999999988889999999988
Q ss_pred CCCCeEEEEEEeCC
Q psy10428 81 VPDETKLLVVDVAS 94 (309)
Q Consensus 81 s~~~vvllvv~r~~ 94 (309)
.+ ..+.+.+.|.+
T Consensus 86 ~g-~~v~l~v~R~g 98 (104)
T 2djt_A 86 GG-PQLHLVIRRPL 98 (104)
T ss_dssp TC-SEEEEEECCCC
T ss_pred CC-CeEEEEEEECC
Confidence 54 44455665544
No 77
>1sgh_B Ezrin-radixin-moesin binding phosphoprotein 50; FERM-peptide complex, structural protein; 3.50A {Homo sapiens} SCOP: j.117.1.1
Probab=99.35 E-value=3.3e-13 Score=88.61 Aligned_cols=37 Identities=24% Similarity=0.410 Sum_probs=35.6
Q ss_pred ccccccHHHHHHHHhhcccCCCCc-cchhhhhhhhhhhcC
Q psy10428 271 LNLNMSAKELRAKLASRKKYDPKK-DYLDIKKKYDIVQKL 309 (309)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 309 (309)
|+|+|||||||+++ ++|+|||+ .+||+.|||||++.|
T Consensus 2 L~L~mtaAeakek~--~~Kr~~KrapqMDw~KK~Eifsnl 39 (39)
T 1sgh_B 2 LDFNISLAMAKERA--HQKRSSKRAPQMDWSKKNELFSNL 39 (39)
T ss_pred cCccccHHHHHHHH--HhhcccccCCcccHHHHHHHHhcC
Confidence 89999999999999 99999999 999999999999976
No 78
>2jre_A C60-1 PDZ domain peptide; de novo protein; NMR {Synthetic}
Probab=99.34 E-value=1.3e-11 Score=98.06 Aligned_cols=89 Identities=20% Similarity=0.325 Sum_probs=70.9
Q ss_pred CCCceEEEEEeeCCCCcceeEEEeccCC------CCCeEEEEeCCCCHHHHcC-CCCCCEEEEECCEEcCCCCHHHHHHH
Q psy10428 5 KTPVVRLCHILKWTDFDGYGFNLHGEKG------KTGQYIGKVDEGSPAEAAG-LKEGDHIIEVNSVNICNENHNQVVQR 77 (309)
Q Consensus 5 ~~~~pR~v~L~K~~~~~G~GFsl~ggk~------~~Gi~V~~V~pgSpA~~AG-Lq~GD~Il~VNG~~V~~~sh~dvv~~ 77 (309)
...+.+.+.|.+...+.+|||.+.++.. ..+++|..|.++|||+++| |++||+|++|||.++.+.++.++..+
T Consensus 9 ~~~~~~~v~l~r~~~~~~lG~~~~~~~~~~~~~~~~gv~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~ 88 (108)
T 2jre_A 9 SGFSLYSVELFREKDTSSLGISISGMRDQSTTGEATGIYVKSLIPGSAAALDGRIEPNDKILRVDDVNVQGMAQSDVVEV 88 (108)
T ss_dssp SSCEEEEEEEECCSTTSCCSEEEECCCCCSCSSCCCCCEEEEECTTSHHHHHSSCCSSEEEEEETTEECTTSCHHHHHHH
T ss_pred cCcEEEEEEEEecCCCCCcCEEEEcccCCCCCCCCCCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHH
Confidence 3456677888643345899999987642 3489999999999999999 99999999999999988889999999
Q ss_pred HHhCCCCeEEEEEEeCC
Q psy10428 78 IKAVPDETKLLVVDVAS 94 (309)
Q Consensus 78 Lk~s~~~vvllvv~r~~ 94 (309)
++..+ ..+.+.+.|.+
T Consensus 89 l~~~g-~~v~l~v~R~~ 104 (108)
T 2jre_A 89 LRNAG-NPVRLLLIRRL 104 (108)
T ss_dssp HHHHC-SEEEEEEEECC
T ss_pred HHcCC-CeEEEEEEeCC
Confidence 98754 44455555544
No 79
>3nfk_A Tyrosine-protein phosphatase non-receptor type 4; PDZ-PDZ-binding site complex, protein binding; 1.43A {Homo sapiens} SCOP: b.36.1.1 PDB: 3nfl_A 2vph_A
Probab=99.34 E-value=5.8e-12 Score=99.93 Aligned_cols=85 Identities=28% Similarity=0.426 Sum_probs=71.1
Q ss_pred CceEEEEEeeCCCCcceeEEEeccCCC-CCeEEEEeCCCCHHHHcC--CCCCCEEEEECCEEcCCCCHHHHHHHHHhCCC
Q psy10428 7 PVVRLCHILKWTDFDGYGFNLHGEKGK-TGQYIGKVDEGSPAEAAG--LKEGDHIIEVNSVNICNENHNQVVQRIKAVPD 83 (309)
Q Consensus 7 ~~pR~v~L~K~~~~~G~GFsl~ggk~~-~Gi~V~~V~pgSpA~~AG--Lq~GD~Il~VNG~~V~~~sh~dvv~~Lk~s~~ 83 (309)
...+.|.|.|.. ..+|||.+.++... .+++|..|.++|||+++| |++||+|++|||.++.+.+|.+++.+++..+.
T Consensus 16 ~~~~~v~l~~~~-~~~~G~~~~gg~~~~~~~~V~~V~~~spA~~aG~rL~~GD~Il~ing~~v~~~~~~~~~~~i~~~~~ 94 (107)
T 3nfk_A 16 DNLVLIRMKPDE-NGRFGFNVKGGYDQKMPVIVSRVAPGTPADLCVPRLNEGDQVVLINGRDIAEHTHDQVVLFIKASCE 94 (107)
T ss_dssp CCCEEEEECCCT-TSCCCEEEEEEGGGTEEEEEEEECTTSHHHHSSSCCCTTCEEEEETTEECTTCCHHHHHHHHHCGGG
T ss_pred CCEEEEEEEcCC-CCCCCEEEEccCCCCCCeEEEEECCCCchHHcCCccCCCCEEEEECCEECCCCCHHHHHHHHHhccc
Confidence 457889998874 47999999887543 479999999999999999 99999999999999999999999999988764
Q ss_pred ---CeEEEEEEe
Q psy10428 84 ---ETKLLVVDV 92 (309)
Q Consensus 84 ---~vvllvv~r 92 (309)
..+.+.+.|
T Consensus 95 ~~~~~v~l~v~r 106 (107)
T 3nfk_A 95 RHSGELMLLVRP 106 (107)
T ss_dssp SBTTBEEEEEEC
T ss_pred cCCcEEEEEEEc
Confidence 344455554
No 80
>1um7_A Synapse-associated protein 102; PDZ, discs large homolog 3, DLG3-human presynaptic protein, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.34 E-value=2.5e-12 Score=102.77 Aligned_cols=89 Identities=28% Similarity=0.475 Sum_probs=75.4
Q ss_pred CCCCCceEEEEEeeCCCCcceeEEEeccCCCCCeEEEEeCCCCHHHHcC-CCCCCEEEEECCEEcCCCCHHHHHHHHHhC
Q psy10428 3 EDKTPVVRLCHILKWTDFDGYGFNLHGEKGKTGQYIGKVDEGSPAEAAG-LKEGDHIIEVNSVNICNENHNQVVQRIKAV 81 (309)
Q Consensus 3 e~~~~~pR~v~L~K~~~~~G~GFsl~ggk~~~Gi~V~~V~pgSpA~~AG-Lq~GD~Il~VNG~~V~~~sh~dvv~~Lk~s 81 (309)
.+.+..+|.|.|.|.. .+|||.+.++....+++|..|.+++||+++| |++||+|++|||+++.+.++.++..+++..
T Consensus 10 ~~~~~~~~~v~l~k~~--~glG~~l~~~~~~~gv~V~~V~~~s~A~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~~~~~ 87 (113)
T 1um7_A 10 GGDAREPRKIILHKGS--TGLGFNIVGGEDGEGIFVSFILAGGPADLSGELRRGDRILSVNGVNLRNATHEQAAAALKRA 87 (113)
T ss_dssp CCCCCSEEEEEEECCS--SCSSBCCBCCSTTCCCBCCCBCSSSHHHHTTCCCTTCEEEEESSCBCTTCCHHHHHHHHHSC
T ss_pred CcCCCceEEEEEEECC--CcccEEEEeccCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Confidence 3457789999999976 8999999988656789999999999999999 999999999999999988899999888876
Q ss_pred CCCeEEEEEEeCC
Q psy10428 82 PDETKLLVVDVAS 94 (309)
Q Consensus 82 ~~~vvllvv~r~~ 94 (309)
+. .+.+.+.+..
T Consensus 88 ~~-~v~l~v~r~~ 99 (113)
T 1um7_A 88 GQ-SVTIVAQYRP 99 (113)
T ss_dssp CS-EEEEEEECCH
T ss_pred CC-cEEEEEEECc
Confidence 44 4445555543
No 81
>2csj_A TJP2 protein; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.36.1.1
Probab=99.34 E-value=3.2e-12 Score=103.41 Aligned_cols=84 Identities=24% Similarity=0.310 Sum_probs=70.5
Q ss_pred CceEEEEEeeCCCCcceeEEEeccCC-------CCCeEEEEeCCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHH
Q psy10428 7 PVVRLCHILKWTDFDGYGFNLHGEKG-------KTGQYIGKVDEGSPAEAAGLKEGDHIIEVNSVNICNENHNQVVQRIK 79 (309)
Q Consensus 7 ~~pR~v~L~K~~~~~G~GFsl~ggk~-------~~Gi~V~~V~pgSpA~~AGLq~GD~Il~VNG~~V~~~sh~dvv~~Lk 79 (309)
..++.|.|.|.+ ..+|||.|.++.. ..|++|..|.+++||+ +||++||+|++|||.++.+.+|.+++.+++
T Consensus 13 ~~~~~v~l~k~~-~~glG~~i~gg~~~~~~~~~~~gv~V~~V~~~spA~-~gL~~GD~I~~Vng~~v~~~~~~~~~~~l~ 90 (117)
T 2csj_A 13 WEQYTVTLQKDS-KRGFGIAVSGGRDNPHFENGETSIVISDVLPGGPAD-GLLQENDRVVMVNGTPMEDVLHSFAVQQLR 90 (117)
T ss_dssp EEEEEEEEECCS-SSTTCEEEECCSSCCCCSSCCCBCEEEEECTTSSHH-HHBCTTCEEEEESSCBCBTCCHHHHHHHHH
T ss_pred ceEEEEEEEECC-CCccCEEEeCCcCCccccCCCCCEEEEEECCCCccc-ccCCCCCEEEEECCEECCCcCHHHHHHHHh
Confidence 467889999874 4899999998764 4579999999999997 889999999999999999999999999998
Q ss_pred hCCCCeEEEEEEeC
Q psy10428 80 AVPDETKLLVVDVA 93 (309)
Q Consensus 80 ~s~~~vvllvv~r~ 93 (309)
..+..+ .+.+.|.
T Consensus 91 ~~~~~v-~l~v~R~ 103 (117)
T 2csj_A 91 KSGKIA-AIVVKRP 103 (117)
T ss_dssp HSCSEE-EEEEEEE
T ss_pred cCCCeE-EEEEEEC
Confidence 875444 5555553
No 82
>2pa1_A PDZ and LIM domain protein 2; PDZ domain, structural genomics, structural genomics consort metal binding protein; 1.70A {Homo sapiens} PDB: 3pdv_A
Probab=99.33 E-value=1.3e-11 Score=94.34 Aligned_cols=73 Identities=26% Similarity=0.408 Sum_probs=62.8
Q ss_pred cceeEEEeccCC-CCCeEEEEeCCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCCeEEEEEEeCC
Q psy10428 21 DGYGFNLHGEKG-KTGQYIGKVDEGSPAEAAGLKEGDHIIEVNSVNICNENHNQVVQRIKAVPDETKLLVVDVAS 94 (309)
Q Consensus 21 ~G~GFsl~ggk~-~~Gi~V~~V~pgSpA~~AGLq~GD~Il~VNG~~V~~~sh~dvv~~Lk~s~~~vvllvv~r~~ 94 (309)
.+|||.+.++.. ..+++|..|.++|||+++||++||+|++|||.++.+.+|.++..+|+... ..+.+.+.|++
T Consensus 12 ~~lG~~l~~~~~~~~g~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~l~~~~-~~v~l~v~R~~ 85 (87)
T 2pa1_A 12 APWGFRITGGRDFHTPIMVTKVAERGKAKDADLRPGDIIVAINGESAEGMLHAEAQSKIRQSP-SPLRLQLDRIT 85 (87)
T ss_dssp SCCSEEEEEEGGGTEEEEEEEECSSSHHHHTTCCTTCEEEEETTEESTTCCHHHHHHHHHTCC-SSEEEEEEECC
T ss_pred CccCEEEecccCCCCCEEEEEECCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC-CeEEEEEEecC
Confidence 799999988754 24899999999999999999999999999999998888999999999887 44456666653
No 83
>2ejy_A 55 kDa erythrocyte membrane protein; GPC, maguk, PDZ, membrane protein; NMR {Homo sapiens} PDB: 2ev8_A
Probab=99.33 E-value=6.3e-12 Score=99.65 Aligned_cols=81 Identities=26% Similarity=0.335 Sum_probs=68.0
Q ss_pred ceEEEEEeeCCCCcceeEEEeccCCCCCeEEEEeCCCCHHHHcC-CCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCCeE
Q psy10428 8 VVRLCHILKWTDFDGYGFNLHGEKGKTGQYIGKVDEGSPAEAAG-LKEGDHIIEVNSVNICNENHNQVVQRIKAVPDETK 86 (309)
Q Consensus 8 ~pR~v~L~K~~~~~G~GFsl~ggk~~~Gi~V~~V~pgSpA~~AG-Lq~GD~Il~VNG~~V~~~sh~dvv~~Lk~s~~~vv 86 (309)
-+|.|.|.|.+ ..+|||.+..... .+++|..|.++|||+++| |++||+|++|||.++.+.+|+++..+|+..++ .+
T Consensus 12 ~~~~v~l~K~~-~~~lG~~l~~~~~-~gv~V~~V~~gspA~~aG~L~~GD~Il~ING~~v~~~~~~~~~~~l~~~~~-~v 88 (97)
T 2ejy_A 12 MVRLIQFEKVT-EEPMGICLKLNEK-QSCTVARILHGGMIHRQGSLHVGDEILEINGTNVTNHSVDQLQKAMKETKG-MI 88 (97)
T ss_dssp -CEEEEEEECS-SSCCSEEEEECTT-CCEEEEEECSSSHHHHHTCCCTTCEEEEETTBCCCSSCSHHHHHHHHHCCE-EE
T ss_pred ccEEEEEEeCC-CCCeeEEEEeCCC-CCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCC-eE
Confidence 57899999975 3799999986533 589999999999999999 99999999999999988889999999998754 33
Q ss_pred EEEEE
Q psy10428 87 LLVVD 91 (309)
Q Consensus 87 llvv~ 91 (309)
.+.+.
T Consensus 89 ~L~V~ 93 (97)
T 2ejy_A 89 SLKVI 93 (97)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 44444
No 84
>1qau_A Neuronal nitric oxide synthase (residues 1-130); beta-finger, oxidoreductase; 1.25A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1qav_B
Probab=99.33 E-value=3e-11 Score=96.50 Aligned_cols=87 Identities=22% Similarity=0.397 Sum_probs=72.8
Q ss_pred EEEEEeeCCCCcceeEEEeccCCCCCeEEEEeCCCCHHHHcCC-CCCCEEEEECCEEcCCCCHHHHHHHHHhCCCCeEEE
Q psy10428 10 RLCHILKWTDFDGYGFNLHGEKGKTGQYIGKVDEGSPAEAAGL-KEGDHIIEVNSVNICNENHNQVVQRIKAVPDETKLL 88 (309)
Q Consensus 10 R~v~L~K~~~~~G~GFsl~ggk~~~Gi~V~~V~pgSpA~~AGL-q~GD~Il~VNG~~V~~~sh~dvv~~Lk~s~~~vvll 88 (309)
..+.|.++. +.+|||.+.+..+..+++|..|.++|||+++|| +.||+|++|||..+.+.++.++..+++...+..+.+
T Consensus 3 ~~v~l~~~~-~~glG~~~~~~~~~~~~~V~~v~~~spA~~aGll~~GD~I~~ing~~v~~~~~~~~~~~l~~~~g~~v~l 81 (112)
T 1qau_A 3 ISVRLFKRK-VGGLGFLVKERVSKPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGIASETHVV 81 (112)
T ss_dssp EEEEEECBT-TTBTSEEEEECSSSSCEEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTSCHHHHHHHHHHSCSSSEEE
T ss_pred EEEEEEcCC-CCceeEEEEecCCCCCEEEEEeCCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCcEEE
Confidence 457787763 589999998876667899999999999999997 999999999999997777999999998865555566
Q ss_pred EEEeCCeee
Q psy10428 89 VVDVASEEY 97 (309)
Q Consensus 89 vv~r~~~~~ 97 (309)
.+.|++...
T Consensus 82 ~v~R~g~~~ 90 (112)
T 1qau_A 82 LILRGPEGF 90 (112)
T ss_dssp EEEECCTTS
T ss_pred EEEeCCccc
Confidence 777765544
No 85
>1v5q_A GRIP1 homolog, glutamate receptor interacting protein 1A-L homolog; PDZ domain, cellular signaling, structural genomics; NMR {Mus musculus} SCOP: b.36.1.1
Probab=99.33 E-value=8.3e-12 Score=101.92 Aligned_cols=88 Identities=18% Similarity=0.319 Sum_probs=72.9
Q ss_pred CCceEEEEEeeCCCCcceeEEEeccC-----CCCCeEEEEeCCCCHHHHcC-CCCCCEEEEECCEEcCCCCHHHHHHHHH
Q psy10428 6 TPVVRLCHILKWTDFDGYGFNLHGEK-----GKTGQYIGKVDEGSPAEAAG-LKEGDHIIEVNSVNICNENHNQVVQRIK 79 (309)
Q Consensus 6 ~~~pR~v~L~K~~~~~G~GFsl~ggk-----~~~Gi~V~~V~pgSpA~~AG-Lq~GD~Il~VNG~~V~~~sh~dvv~~Lk 79 (309)
...++.|.|.|+. +.+|||.|.++. ...+++|..|.+++||+++| |++||+|++|||+++.+.+|.++..+|+
T Consensus 13 ~~~~~~v~l~k~~-~~glG~~l~~~~~~~~~~~~~~~V~~V~~~spA~~aG~L~~GD~I~~ing~~v~~~~~~~~~~~l~ 91 (122)
T 1v5q_A 13 HTETTEVVLTADP-VTGFGIQLQGSVFATETLSSPPLISYIEADSPAERCGVLQIGDRVMAINGIPTEDSTFEEANQLLR 91 (122)
T ss_dssp CEEEEEEEECCCS-SSSSCEEEECCSCCSSSCSSCCEEEEECTTSHHHHSCCCCTTCCEEEETTEESSSSCHHHHHHHHH
T ss_pred cceeEEEEEEeCC-CCccCEEEecccccCCcCCCCcEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence 3577889998873 589999999762 23578999999999999999 9999999999999998888999999998
Q ss_pred hCC-CCeEEEEEEeCC
Q psy10428 80 AVP-DETKLLVVDVAS 94 (309)
Q Consensus 80 ~s~-~~vvllvv~r~~ 94 (309)
... +..+.+.+.|+.
T Consensus 92 ~~~~g~~v~l~v~R~~ 107 (122)
T 1v5q_A 92 DSSITSKVTLEIEFDV 107 (122)
T ss_dssp HHTTTTCEEEEEEEEC
T ss_pred hCCCCCeEEEEEEECC
Confidence 774 445556666654
No 86
>1uew_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.33 E-value=9.7e-12 Score=100.11 Aligned_cols=87 Identities=29% Similarity=0.393 Sum_probs=71.3
Q ss_pred CCceEEEEEeeCCCCcceeEEEeccCCC--------CCeEEEEeCCCCHHHH-cCCCCCCEEEEECCEEcCCCCHHHHHH
Q psy10428 6 TPVVRLCHILKWTDFDGYGFNLHGEKGK--------TGQYIGKVDEGSPAEA-AGLKEGDHIIEVNSVNICNENHNQVVQ 76 (309)
Q Consensus 6 ~~~pR~v~L~K~~~~~G~GFsl~ggk~~--------~Gi~V~~V~pgSpA~~-AGLq~GD~Il~VNG~~V~~~sh~dvv~ 76 (309)
..++|.|.|.|.. ..+|||.|.++... .+++|..|.++|||++ +||++||+|++|||..+.+.+|.++..
T Consensus 8 ~~~~~~v~l~~~~-~~~lGf~l~~~~~~~~~g~~~~~~~~V~~V~~~spA~~~agL~~GD~I~~ing~~v~~~~~~~~~~ 86 (114)
T 1uew_A 8 SLQTSDVVIHRKE-NEGFGFVIISSLNRPESGSTITVPHKIGRIIDGSPADRCAKLKVGDRILAVNGQSIINMPHADIVK 86 (114)
T ss_dssp CCCCEEEEEECCT-TSCCCEEEECCCCSCCSSCCSCCSCEEEEECTTCTTGGGSSCCTTCBEEEETTBCTTTSCHHHHHH
T ss_pred cccceEEEEEECC-CCCCCEEEEeecccCCCCcccccCeEEEEECCCChHHHhCCCCCCCEEEEECCEECCCCCHHHHHH
Confidence 4578899998863 37999999876422 2679999999999999 999999999999999998888999999
Q ss_pred HHHhCCCCeEEEEEEeCC
Q psy10428 77 RIKAVPDETKLLVVDVAS 94 (309)
Q Consensus 77 ~Lk~s~~~vvllvv~r~~ 94 (309)
+|+.. +..+.+.+.|.+
T Consensus 87 ~l~~~-g~~v~l~v~r~~ 103 (114)
T 1uew_A 87 LIKDA-GLSVTLRIIPQE 103 (114)
T ss_dssp HHHHT-TTEEEEEECCCS
T ss_pred HHHcC-CCeEEEEEEeCC
Confidence 99884 445455666644
No 87
>1rgw_A ZAsp protein; PDZ, cypher, oracle, muscle, Z-DISK, sarcomere, structural protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 1wjl_A
Probab=99.33 E-value=9.3e-12 Score=94.51 Aligned_cols=81 Identities=22% Similarity=0.350 Sum_probs=66.2
Q ss_pred eEEEEEeeCCCCcceeEEEeccCC-CCCeEEEEeCCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCCeEE
Q psy10428 9 VRLCHILKWTDFDGYGFNLHGEKG-KTGQYIGKVDEGSPAEAAGLKEGDHIIEVNSVNICNENHNQVVQRIKAVPDETKL 87 (309)
Q Consensus 9 pR~v~L~K~~~~~G~GFsl~ggk~-~~Gi~V~~V~pgSpA~~AGLq~GD~Il~VNG~~V~~~sh~dvv~~Lk~s~~~vvl 87 (309)
+..|.|. ++ .+|||.+.++.. ..+++|..|.++|||+++||++||+|++|||.++.+.++.++..+++..+.. +.
T Consensus 2 ~~~v~l~-~~--~~~G~~l~gg~~~~~~v~V~~V~~~spA~~aGl~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~-v~ 77 (85)
T 1rgw_A 2 AYSVTLT-GP--GPWGFRLQGGKDFNMPLTISRITPGSKAAQSQLSQGDLVVAIDGVNTDTMTHLEAQNKIKSASYN-LS 77 (85)
T ss_dssp EEEEEEC-CS--SCCCEEECCCGGGTSCCBEEEECTTSHHHHSSCCCCSBEEEETTEECTTCCHHHHHHHHTTCSSC-EE
T ss_pred cEEEEEe-CC--CccCEEEEeccCCCCCeEEEEECCCCHHHHcCCCCCCEEEEECCEECCCcCHHHHHHHHHcCCCe-EE
Confidence 3567774 43 799999987754 3478999999999999999999999999999999988999999888776655 45
Q ss_pred EEEEeC
Q psy10428 88 LVVDVA 93 (309)
Q Consensus 88 lvv~r~ 93 (309)
+.+.|.
T Consensus 78 l~v~R~ 83 (85)
T 1rgw_A 78 LTLQKS 83 (85)
T ss_dssp EEEESC
T ss_pred EEEEeC
Confidence 555554
No 88
>2o2t_A Multiple PDZ domain protein; structural protein, structural genomics, structural genomics consortium, SGC; 2.70A {Homo sapiens}
Probab=99.33 E-value=5e-12 Score=102.01 Aligned_cols=88 Identities=30% Similarity=0.452 Sum_probs=73.7
Q ss_pred CCceEEEEEeeCCCCcceeEEEeccCC----CCCeEEEEeCCCCHHHHcC-CCCCCEEEEECCEEcC-CCCHHHHHHHHH
Q psy10428 6 TPVVRLCHILKWTDFDGYGFNLHGEKG----KTGQYIGKVDEGSPAEAAG-LKEGDHIIEVNSVNIC-NENHNQVVQRIK 79 (309)
Q Consensus 6 ~~~pR~v~L~K~~~~~G~GFsl~ggk~----~~Gi~V~~V~pgSpA~~AG-Lq~GD~Il~VNG~~V~-~~sh~dvv~~Lk 79 (309)
+..++.|.|.|.+ ..+|||.+.++.. ..|++|..|.++|||+++| |++||+|++|||.++. +.+|.++..+++
T Consensus 18 ~~~~~~v~l~k~~-~~~lG~~i~~~~~~~~~~~gv~V~~V~~~spA~~aG~l~~GD~Il~ing~~v~~~~~~~~~~~~l~ 96 (117)
T 2o2t_A 18 GRHVEVFELLKPP-SGGLGFSVVGLRSENRGELGIFVQEIQEGSVAHRDGRLKETDQILAINGQALDQTITHQQAISILQ 96 (117)
T ss_dssp TSCEEEEEEECCS-SSCSSCCEEEEECCC--CEEEEECCCCTTSHHHHHCCCCTTCEEEEETTEECCTTSCHHHHHHHHH
T ss_pred CCeEEEEEEEECC-CCCCCEEEeecccCCCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCCHHHHHHHHH
Confidence 4678999999973 4899999987642 3589999999999999999 9999999999999997 889999999998
Q ss_pred hCCCCeEEEEEEeCCe
Q psy10428 80 AVPDETKLLVVDVASE 95 (309)
Q Consensus 80 ~s~~~vvllvv~r~~~ 95 (309)
..+. .+.+.+.|.+.
T Consensus 97 ~~~~-~v~l~v~R~~~ 111 (117)
T 2o2t_A 97 KAKD-TVQLVIARGSL 111 (117)
T ss_dssp HCCS-EEEEEEESSCC
T ss_pred cCCC-EEEEEEEeCCc
Confidence 8654 44566666543
No 89
>1wfg_A Regulating synaptic membrane exocytosis protein 2; PDZ domain, RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2css_A 1zub_A
Probab=99.32 E-value=1e-11 Score=102.94 Aligned_cols=86 Identities=26% Similarity=0.334 Sum_probs=68.7
Q ss_pred ceEEEEEeeC--------CCCcceeEEEeccCC----CCCeEEEEeCCCCHHHHcC-CCCCCEEEEECCEEcCCCCHHHH
Q psy10428 8 VVRLCHILKW--------TDFDGYGFNLHGEKG----KTGQYIGKVDEGSPAEAAG-LKEGDHIIEVNSVNICNENHNQV 74 (309)
Q Consensus 8 ~pR~v~L~K~--------~~~~G~GFsl~ggk~----~~Gi~V~~V~pgSpA~~AG-Lq~GD~Il~VNG~~V~~~sh~dv 74 (309)
....+.|.+. ....+|||.+.++.. ..+++|..|.+++||+++| |++||+|++|||+++.+.+|.++
T Consensus 27 ~i~~v~l~~~~~~~~i~k~~~~~lG~~i~gg~~~~~~~~gv~V~~V~~gspA~~aG~L~~GD~Il~ing~~v~~~~~~~~ 106 (131)
T 1wfg_A 27 LIGRILLNKRLKDGSVPRDSGAMLGLKVVGGKMTESGRLCAFITKVKKGSLADTVGHLRPGDEVLEWNGRLLQGATFEEV 106 (131)
T ss_dssp EEEEEEEECSCTTSCCCSCSCTTTTEEEEEEEECSSSCEEEEEEEECTTSHHHHTSCCCTTCEEEEETTEECTTCCHHHH
T ss_pred eeeEEEEeccceeEEEecCCCCCCCEEEecCccCCCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHH
Confidence 3445566655 234789999988653 2489999999999999999 99999999999999999999999
Q ss_pred HHHHHhC-CCCeEEEEEEeC
Q psy10428 75 VQRIKAV-PDETKLLVVDVA 93 (309)
Q Consensus 75 v~~Lk~s-~~~vvllvv~r~ 93 (309)
+.+|+.+ .+..+.+++.|.
T Consensus 107 ~~~l~~~~~g~~v~l~v~R~ 126 (131)
T 1wfg_A 107 YNIILESKPEPQVELVVSRS 126 (131)
T ss_dssp HHHHHHTSSSSEEEEEEEEE
T ss_pred HHHHHhcCCCCEEEEEEEcC
Confidence 9999887 345555555554
No 90
>1q7x_A PDZ2B domain of PTP-BAS (HPTP1E); phosphatase, structural proteomics in europe, spine, structural genomics, hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.32 E-value=9e-12 Score=99.11 Aligned_cols=88 Identities=22% Similarity=0.384 Sum_probs=74.4
Q ss_pred CCCceEEEEEeeCCCCcceeEEEe-----ccCC----CCCeEEEEeCCCCHHHHcC-CCCCCEEEEECCEEcCCCCHHHH
Q psy10428 5 KTPVVRLCHILKWTDFDGYGFNLH-----GEKG----KTGQYIGKVDEGSPAEAAG-LKEGDHIIEVNSVNICNENHNQV 74 (309)
Q Consensus 5 ~~~~pR~v~L~K~~~~~G~GFsl~-----ggk~----~~Gi~V~~V~pgSpA~~AG-Lq~GD~Il~VNG~~V~~~sh~dv 74 (309)
..++.+.|.|.|.+ .+|||.+. ++.. ..|++|..|.++|||+++| |++||+|++|||.++.+.+|.++
T Consensus 6 ~~~~~~~v~l~k~~--~~lG~~i~~~~~~gg~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~ 83 (108)
T 1q7x_A 6 KPGDIFEVELAKND--NSLGISVTVLFDKGGVNTSVRHGGIYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEGATHKQA 83 (108)
T ss_dssp CSSSEEEEEEESSS--CSCCEEESSSSSSBCBCTTSSSCCCBEEEECTTSTHHHHTCCCSSCEEEEETTEECBSCTTSHH
T ss_pred CCCcEEEEEEEECC--CCccEEEEEeccCCCccccCCCCCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHH
Confidence 35678999999986 89999998 6543 3589999999999999999 99999999999999988899999
Q ss_pred HHHHHhCCCCeEEEEEEeCCe
Q psy10428 75 VQRIKAVPDETKLLVVDVASE 95 (309)
Q Consensus 75 v~~Lk~s~~~vvllvv~r~~~ 95 (309)
+.+++..+ ..+.+.+.|.+.
T Consensus 84 ~~~~~~~g-~~v~l~v~R~~~ 103 (108)
T 1q7x_A 84 VETLRNTG-QVVHLLLEKGQS 103 (108)
T ss_dssp HHHHHHTT-SEEEEEEECCCC
T ss_pred HHHHHcCC-CeEEEEEEeCCc
Confidence 99998875 444566666543
No 91
>3soe_A Membrane-associated guanylate kinase, WW and PDZ containing protein 3; structural genomics consortium, SGC, PDZ domain, signaling P; 1.60A {Homo sapiens}
Probab=99.32 E-value=9.6e-12 Score=101.66 Aligned_cols=83 Identities=27% Similarity=0.386 Sum_probs=70.0
Q ss_pred CceEEEEEeeCCCCcceeEEEeccCCCCCeEEEEeCCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCC-CCe
Q psy10428 7 PVVRLCHILKWTDFDGYGFNLHGEKGKTGQYIGKVDEGSPAEAAGLKEGDHIIEVNSVNICNENHNQVVQRIKAVP-DET 85 (309)
Q Consensus 7 ~~pR~v~L~K~~~~~G~GFsl~ggk~~~Gi~V~~V~pgSpA~~AGLq~GD~Il~VNG~~V~~~sh~dvv~~Lk~s~-~~v 85 (309)
++.+.|+|.|++ .||||+|.++. .+.+|..|.+ +++.+||++||+|++|||.++.+.+|.+++.+|+.++ +..
T Consensus 11 ~~~~~V~L~Kg~--~G~GFsI~~~~--~g~~V~~I~~--~~~~aGL~~GD~Il~VNG~~v~~~~h~evv~~lk~~~~G~~ 84 (113)
T 3soe_A 11 GLLVTIPLIKGP--KGFGFAIADSP--TGQKVKMILD--SQWCQGLQKGDIIKEIYHQNVQNLTHLQVVEVLKQFPVGAD 84 (113)
T ss_dssp CEEEEEEEECBT--TBSSEEEEEET--TEEEEEEESC--GGGSTTCCTTCEEEEETTEECTTSCHHHHHHHHHHSCTTCE
T ss_pred CCEEEEEEEECC--CcccEEEeCCC--CCcEEEEecC--hHHhCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCCCE
Confidence 567899999987 89999997653 4678999988 4788999999999999999999999999999999874 555
Q ss_pred EEEEEEeCCe
Q psy10428 86 KLLVVDVASE 95 (309)
Q Consensus 86 vllvv~r~~~ 95 (309)
+.+++.|++.
T Consensus 85 v~L~V~R~g~ 94 (113)
T 3soe_A 85 VPLLILRGGP 94 (113)
T ss_dssp EEEEEEESSC
T ss_pred EEEEEEECCc
Confidence 5667777654
No 92
>3axa_A Afadin, nectin-3, protein AF-6; PDZ domain, fusion protein, cell adhesion; 2.78A {Mus musculus} PDB: 1xz9_A 2exg_A* 1t2m_A 2ain_A
Probab=99.32 E-value=1.2e-11 Score=98.17 Aligned_cols=86 Identities=21% Similarity=0.396 Sum_probs=69.1
Q ss_pred CCceEEEEEeeCCCCcceeEEEeccC----CCCCeEEEEeCCCCHHHHcC-CCCCCEEEEECCEEcCCCCHHHHHHHHHh
Q psy10428 6 TPVVRLCHILKWTDFDGYGFNLHGEK----GKTGQYIGKVDEGSPAEAAG-LKEGDHIIEVNSVNICNENHNQVVQRIKA 80 (309)
Q Consensus 6 ~~~pR~v~L~K~~~~~G~GFsl~ggk----~~~Gi~V~~V~pgSpA~~AG-Lq~GD~Il~VNG~~V~~~sh~dvv~~Lk~ 80 (309)
..+...+.| +.. .+|||.+.++. ...+++|..|.++|||+++| |++||+|++|||.++.+.+|.+++.+++.
T Consensus 9 ~~~~~~v~l-~~~--~glG~~i~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~ing~~v~~~~~~~~~~~~~~ 85 (106)
T 3axa_A 9 EPEIITVTL-KKQ--NGMGLSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQLLSVDGRSLVGLSQERAAELMTR 85 (106)
T ss_dssp -CCEEEEEE-ECS--SSCSEEEEEEECSSCSSEEEEEEEEBTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHT
T ss_pred CceEEEEEE-CCC--CccCEEEEeecCCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHc
Confidence 345566667 655 89999998753 23589999999999999999 99999999999999998999999999988
Q ss_pred CCCCeEEEEEEeCCe
Q psy10428 81 VPDETKLLVVDVASE 95 (309)
Q Consensus 81 s~~~vvllvv~r~~~ 95 (309)
.+. .+.+.+.|.+.
T Consensus 86 ~g~-~v~l~v~R~~~ 99 (106)
T 3axa_A 86 TSS-VVTLEVAKQGA 99 (106)
T ss_dssp CCS-EEEEEEECCCS
T ss_pred CCC-eEEEEEEeCCc
Confidence 654 44556666543
No 93
>2eeg_A PDZ and LIM domain protein 4; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.32 E-value=1.2e-11 Score=96.09 Aligned_cols=87 Identities=25% Similarity=0.293 Sum_probs=70.1
Q ss_pred CCCCceEEEEEeeCCCCcceeEEEeccCC-CCCeEEEEeCCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCC
Q psy10428 4 DKTPVVRLCHILKWTDFDGYGFNLHGEKG-KTGQYIGKVDEGSPAEAAGLKEGDHIIEVNSVNICNENHNQVVQRIKAVP 82 (309)
Q Consensus 4 ~~~~~pR~v~L~K~~~~~G~GFsl~ggk~-~~Gi~V~~V~pgSpA~~AGLq~GD~Il~VNG~~V~~~sh~dvv~~Lk~s~ 82 (309)
.....++.+.|. ++ .+|||.+.++.. ..+++|..|.+++||+++||++||+|++|||+++...++.++..+++..+
T Consensus 4 ~s~~~~~~v~l~-~~--~~~G~~l~gg~~~~~~v~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~~~~~g 80 (94)
T 2eeg_A 4 GSSGMPHSVTLR-GP--SPWGFRLVGGRDFSAPLTISRVHAGSKAALAALCPGDLIQAINGESTELMTHLEAQNRIKGCH 80 (94)
T ss_dssp CCCCCCEEEEEC-CS--SCCSCCEECCTTTTSCCEECCCCSSSHHHHTTCCTTCEEEEETTEETTTCCHHHHHHHHHTCC
T ss_pred CCcCceEEEEEe-CC--CccCEEEECccCCCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC
Confidence 344567888884 43 689999998764 35789999999999999999999999999999998888999998888764
Q ss_pred CCeEEEEEEeCC
Q psy10428 83 DETKLLVVDVAS 94 (309)
Q Consensus 83 ~~vvllvv~r~~ 94 (309)
..+ .+.+.|.+
T Consensus 81 ~~v-~l~v~R~g 91 (94)
T 2eeg_A 81 DHL-TLSVSSGP 91 (94)
T ss_dssp SCE-EEEEECCS
T ss_pred CeE-EEEEEeCC
Confidence 444 45555543
No 94
>1z87_A Alpha-1-syntrophin; protein binding; NMR {Mus musculus}
Probab=99.32 E-value=8.1e-12 Score=115.81 Aligned_cols=89 Identities=27% Similarity=0.346 Sum_probs=75.2
Q ss_pred CCCCCceEEEEEeeCCCCcceeEEEeccCC-CCCeEEEEeCCCCHHHH-cCCCCCCEEEEECCEEcCCCCHHHHHHHHHh
Q psy10428 3 EDKTPVVRLCHILKWTDFDGYGFNLHGEKG-KTGQYIGKVDEGSPAEA-AGLKEGDHIIEVNSVNICNENHNQVVQRIKA 80 (309)
Q Consensus 3 e~~~~~pR~v~L~K~~~~~G~GFsl~ggk~-~~Gi~V~~V~pgSpA~~-AGLq~GD~Il~VNG~~V~~~sh~dvv~~Lk~ 80 (309)
+.....+|.|.|.|.+ ..||||.|.++.. ..+++|..|.++|||++ +||++||+|++|||++|.+.+|.+++.+|+.
T Consensus 72 ~~~~~~~r~V~L~k~~-~~glGf~I~gg~d~~~gi~V~~V~~gspA~~~aGL~~GD~Il~VNG~~v~~~t~~e~v~~l~~ 150 (263)
T 1z87_A 72 EALLLQRRRVTVRKAD-AGGLGISIKGGRENKMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQALKK 150 (263)
T ss_dssp CTTSCSSEEECCCTTT-TCCCCCEEEEETTTTEEEEEEECCTTSHHHHCTTCCSSCEEEEESSCBCTTSCHHHHHHHHHH
T ss_pred CcCCCccEEEEEEeCC-CCCEeEEEeeccCCCCCEEEEEECCCCHHHHhCCCCCCCEEEEECCEECCCcCHHHHHHHHhc
Confidence 4445578999999974 4899999998764 35899999999999999 6899999999999999999999999999999
Q ss_pred CCCCeEEEEEEeC
Q psy10428 81 VPDETKLLVVDVA 93 (309)
Q Consensus 81 s~~~vvllvv~r~ 93 (309)
.+..+. +++.|.
T Consensus 151 ~g~~V~-L~V~R~ 162 (263)
T 1z87_A 151 TGKEVV-LEVKYM 162 (263)
T ss_dssp CCSCCC-EEEECC
T ss_pred CCCeEE-EEEEeC
Confidence 876654 445553
No 95
>1x5q_A LAP4 protein; PDZ domain, scribble homolog protein, hscrib, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.31 E-value=3.6e-11 Score=95.90 Aligned_cols=87 Identities=30% Similarity=0.491 Sum_probs=71.1
Q ss_pred CCceEEEEEeeCCCCcceeEEEeccCC-------CCCeEEEEeCCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHH
Q psy10428 6 TPVVRLCHILKWTDFDGYGFNLHGEKG-------KTGQYIGKVDEGSPAEAAGLKEGDHIIEVNSVNICNENHNQVVQRI 78 (309)
Q Consensus 6 ~~~pR~v~L~K~~~~~G~GFsl~ggk~-------~~Gi~V~~V~pgSpA~~AGLq~GD~Il~VNG~~V~~~sh~dvv~~L 78 (309)
..+...+.|.+.. .+|||.+.++.. ..+++|..|.++|||+++||++||+|++|||..+.+..+.+++..+
T Consensus 13 ~~~~~~~~l~~~~--~glG~~i~~g~~~~~~~~~~~g~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~~ 90 (110)
T 1x5q_A 13 EEEELTLTILRQT--GGLGISIAGGKGSTPYKGDDEGIFISRVSEEGPAARAGVRVGDKLLEVNGVALQGAEHHEAVEAL 90 (110)
T ss_dssp CCEEEEEEEECSS--SSCSEEEEECTTSCCSSTTCCSEEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHHHHHHH
T ss_pred CcceEEEEEecCC--CeeeEEEEccccCCccccCCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCcCHHHHHHHh
Confidence 4466777888764 899999987642 3689999999999999999999999999999999888899888888
Q ss_pred HhCCCCeEEEEEEeCCe
Q psy10428 79 KAVPDETKLLVVDVASE 95 (309)
Q Consensus 79 k~s~~~vvllvv~r~~~ 95 (309)
+.. +..+.+.+.|++.
T Consensus 91 ~~~-g~~v~l~v~R~g~ 106 (110)
T 1x5q_A 91 RGA-GTAVQMRVWRESG 106 (110)
T ss_dssp HSC-CSEEEEEEEECSS
T ss_pred hCC-CCeEEEEEEECCc
Confidence 774 4555566666543
No 96
>2kom_A Partitioning defective 3 homolog; PAR-3B, PDZ domain, PSI, structural genomics, alternative splicing, cell cycle, cell division, cell junction; NMR {Homo sapiens}
Probab=99.31 E-value=3.8e-11 Score=98.04 Aligned_cols=86 Identities=26% Similarity=0.363 Sum_probs=70.8
Q ss_pred CCceEEEEEeeCCCCcceeEEEeccCCC----CCeEEEEeCCCCHHHHcC-CCCCCEEEEECCEEcCCCCHHHHHHHHHh
Q psy10428 6 TPVVRLCHILKWTDFDGYGFNLHGEKGK----TGQYIGKVDEGSPAEAAG-LKEGDHIIEVNSVNICNENHNQVVQRIKA 80 (309)
Q Consensus 6 ~~~pR~v~L~K~~~~~G~GFsl~ggk~~----~Gi~V~~V~pgSpA~~AG-Lq~GD~Il~VNG~~V~~~sh~dvv~~Lk~ 80 (309)
+.+...+.|.+.. .+|||.+.+.... .+++|..|.++|||+++| |++||+|++|||+++.+.++.++..+|+.
T Consensus 28 ~~~~~~v~l~~~~--~~lG~~l~~~~~~~~g~~gv~V~~V~~gspA~~aG~L~~GD~Il~Ing~~v~~~~~~~~~~~l~~ 105 (121)
T 2kom_A 28 IGKRLNIQLKKGT--EGLGFSITSRDVTIGGSAPIYVKNILPRGAAIQDGRLKAGDRLIEVNGVDLVGKSQEEVVSLLRS 105 (121)
T ss_dssp SCEEEEEEEECCT--TCCCEEEECCCCSSSSSCCEEEEEECTTSHHHHHTCCCSSSEEEEETTEECTTSCHHHHHHHHHH
T ss_pred CCeEEEEEEEcCC--CcEeEEEEeccCCcCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEEcCCCCHHHHHHHHhc
Confidence 4455677777765 8999999877532 589999999999999999 99999999999999988889999999988
Q ss_pred CC-CCeEEEEEEeC
Q psy10428 81 VP-DETKLLVVDVA 93 (309)
Q Consensus 81 s~-~~vvllvv~r~ 93 (309)
.. +..+.+.+.|.
T Consensus 106 ~~~g~~v~l~v~R~ 119 (121)
T 2kom_A 106 TKMEGTVSLLVFRQ 119 (121)
T ss_dssp CCSSCEEEEEEEEC
T ss_pred CCCCCEEEEEEEeC
Confidence 63 45555666654
No 97
>1b8q_A Protein (neuronal nitric oxide synthase); PDZ domain, NNOS, nitric oxide synthase, oxidoreductase; NMR {Rattus norvegicus} SCOP: b.36.1.1
Probab=99.31 E-value=9.4e-12 Score=101.89 Aligned_cols=90 Identities=23% Similarity=0.416 Sum_probs=77.0
Q ss_pred CceEEEEEeeCCCCcceeEEEeccCCCCCeEEEEeCCCCHHHHcCC-CCCCEEEEECCEEcCCCCHHHHHHHHHhCCCCe
Q psy10428 7 PVVRLCHILKWTDFDGYGFNLHGEKGKTGQYIGKVDEGSPAEAAGL-KEGDHIIEVNSVNICNENHNQVVQRIKAVPDET 85 (309)
Q Consensus 7 ~~pR~v~L~K~~~~~G~GFsl~ggk~~~Gi~V~~V~pgSpA~~AGL-q~GD~Il~VNG~~V~~~sh~dvv~~Lk~s~~~v 85 (309)
..++.|.|.++. +.+|||.+.+..+..+++|..|.++|||+++|| ++||+|++|||..+.+.++.++..+|+...+..
T Consensus 7 ~~~~~v~l~~~~-~~glG~~~~~~~~~~~~~V~~V~~~spA~~aGll~~GD~I~~ing~~v~~~~~~~~~~~l~~~~g~~ 85 (127)
T 1b8q_A 7 PNVISVRLFKRK-VGGLGFLVKERVSKPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGIASET 85 (127)
T ss_dssp CCSEEEEEECTT-TSCCSCCEEECTTSSCEEECCCSSSSSHHHHSSCCTTTCCCEETTEECSSSCHHHHHHHHHSCCSSC
T ss_pred CceEEEEEEeCC-CCcEeEEEEecCCCCCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCe
Confidence 467889999874 579999998876656899999999999999997 999999999999998888999999998876666
Q ss_pred EEEEEEeCCeee
Q psy10428 86 KLLVVDVASEEY 97 (309)
Q Consensus 86 vllvv~r~~~~~ 97 (309)
+.+.+.|++...
T Consensus 86 v~l~v~R~g~~~ 97 (127)
T 1b8q_A 86 HVVLILRGPEGF 97 (127)
T ss_dssp EEEEEECCCCSE
T ss_pred EEEEEEeCCceE
Confidence 677777776544
No 98
>2pkt_A PDZ and LIM domain protein 1; PDZ domain, structural genomics, structural genomics consort unknown function; HET: PG4; 1.50A {Homo sapiens} PDB: 2v1w_A*
Probab=99.31 E-value=1.6e-11 Score=94.63 Aligned_cols=82 Identities=28% Similarity=0.321 Sum_probs=67.2
Q ss_pred eEEEEEeeCCCCcceeEEEeccCCC-CCeEEEEeCCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCCeEE
Q psy10428 9 VRLCHILKWTDFDGYGFNLHGEKGK-TGQYIGKVDEGSPAEAAGLKEGDHIIEVNSVNICNENHNQVVQRIKAVPDETKL 87 (309)
Q Consensus 9 pR~v~L~K~~~~~G~GFsl~ggk~~-~Gi~V~~V~pgSpA~~AGLq~GD~Il~VNG~~V~~~sh~dvv~~Lk~s~~~vvl 87 (309)
++.+.+... .+|||.+.++... .+++|..|.++|||+++||++||+|++|||.++.+..+.++..+++.. +..+.
T Consensus 4 ~~~v~~~~~---~~~G~~l~~~~~~~~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~-g~~v~ 79 (91)
T 2pkt_A 4 TQQIDLQGP---GPWGFRLVGGKDFEQPLAISRVTPGSKAALANLCIGDVITAIDGENTSNMTHLEAQNRIKGC-TDNLT 79 (91)
T ss_dssp EEEEEEESS---SCCSEEEEEEGGGTEEEEEEEECTTSHHHHTTCCTTCEEEEETTEECTTCCHHHHHHHHHTC-SSEEE
T ss_pred cEEEEECCC---CCCCEEEEccCCCCCCeEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHcC-CCeEE
Confidence 466666643 6899999887542 479999999999999999999999999999999888888999999884 45555
Q ss_pred EEEEeCC
Q psy10428 88 LVVDVAS 94 (309)
Q Consensus 88 lvv~r~~ 94 (309)
+.+.|++
T Consensus 80 l~v~R~g 86 (91)
T 2pkt_A 80 LTVARSE 86 (91)
T ss_dssp EEEEEEC
T ss_pred EEEEECC
Confidence 6666654
No 99
>2cs5_A Tyrosine-protein phosphatase, non-receptor type 4; PDZ domain, ptpase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.31 E-value=4.1e-12 Score=102.93 Aligned_cols=88 Identities=27% Similarity=0.422 Sum_probs=72.6
Q ss_pred CCceEEEEEeeCCCCcceeEEEeccCCC-CCeEEEEeCCCCHHHHc--CCCCCCEEEEECCEEcCCCCHHHHHHHHHhCC
Q psy10428 6 TPVVRLCHILKWTDFDGYGFNLHGEKGK-TGQYIGKVDEGSPAEAA--GLKEGDHIIEVNSVNICNENHNQVVQRIKAVP 82 (309)
Q Consensus 6 ~~~pR~v~L~K~~~~~G~GFsl~ggk~~-~Gi~V~~V~pgSpA~~A--GLq~GD~Il~VNG~~V~~~sh~dvv~~Lk~s~ 82 (309)
...+|+|.|.|+. ..+|||.+.++... .+++|..|.++|||+++ ||++||+|++|||.++.+.+|.+++.+++..+
T Consensus 13 ~~~~~~v~l~k~~-~~~~G~~l~gg~~~~~~v~V~~V~~~spA~~a~gGL~~GD~Il~ing~~v~~~~~~~~~~~~~~~~ 91 (119)
T 2cs5_A 13 HDNLVLIRMKPDE-NGRFGFNVKGGYDQKMPVIVSRVAPGTPADLCVPRLNEGDQVVLINGRDIAEHTHDQVVLFIKASC 91 (119)
T ss_dssp SSCCEEEEECCCS-SSCCSEEEEEEGGGTEEEEEEEECSSSTTTSSSSCCCTTCEEEEETTBCTTSSCHHHHHHHHHHHH
T ss_pred CCCeEEEEEEeCC-CCCcCEEEecccCCCCCeEEEEECCCCHHHHhhcCCCCCCEEEEECCEECCCCCHHHHHHHHHhcc
Confidence 3567999999975 35699999987532 36999999999999999 89999999999999999999999999998775
Q ss_pred C---CeEEEEEEeCC
Q psy10428 83 D---ETKLLVVDVAS 94 (309)
Q Consensus 83 ~---~vvllvv~r~~ 94 (309)
+ ..+.+++.|..
T Consensus 92 ~~~~~~v~l~v~R~~ 106 (119)
T 2cs5_A 92 ERHSGELMLLVRPNA 106 (119)
T ss_dssp HCCSSCEEEEEECCC
T ss_pred ccCCCEEEEEEEccc
Confidence 3 34455666653
No 100
>2z17_A Pleckstrin homology SEC7 and coiled-coil domains- binding protein; PDZ domain, cytoplasm, membrane, polymorphism, protein binding; 2.70A {Homo sapiens}
Probab=99.30 E-value=8.4e-12 Score=98.77 Aligned_cols=80 Identities=26% Similarity=0.363 Sum_probs=68.5
Q ss_pred CCCceEEEEEeeCCCCcceeEEEeccC--------CCCCeEEEEeCCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHH
Q psy10428 5 KTPVVRLCHILKWTDFDGYGFNLHGEK--------GKTGQYIGKVDEGSPAEAAGLKEGDHIIEVNSVNICNENHNQVVQ 76 (309)
Q Consensus 5 ~~~~pR~v~L~K~~~~~G~GFsl~ggk--------~~~Gi~V~~V~pgSpA~~AGLq~GD~Il~VNG~~V~~~sh~dvv~ 76 (309)
.+..+|.|.|.|.. ..+|||.+.+.. ...+++|..|.+++||+++||++||+|++|||.++.+.+|.++..
T Consensus 12 s~~~~~~v~l~~~~-~~~~G~~l~~~~~~~~~~~~~~~~~~V~~V~~~spA~~aGl~~GD~I~~vng~~v~~~~~~~~~~ 90 (104)
T 2z17_A 12 SWSQRKLVTVEKQD-NETFGFEIQSYRPQNQNACSSEMFTLICKIQEDSPAHCAGLQAGDVLANINGVSTEGFTYKQVVD 90 (104)
T ss_dssp CCSCCCEEEEECCT-TSCCSEEEEECCCCCCSSSCCSCCEEEEEECTTSHHHHHTCCTTCBCCEETTEECTTCCHHHHHH
T ss_pred CCCcceEEEEEeCC-CCCccEEEEeeecccCCcccCCCCeEEEEECCCChHHHcCCCCCCEEEEECCEEcCCCCHHHHHH
Confidence 46678899999874 368999998731 235899999999999999999999999999999998889999999
Q ss_pred HHHhCCCCe
Q psy10428 77 RIKAVPDET 85 (309)
Q Consensus 77 ~Lk~s~~~v 85 (309)
+|+..++.+
T Consensus 91 ~l~~~~~~v 99 (104)
T 2z17_A 91 LIRSSGNLL 99 (104)
T ss_dssp HHHHTTTEE
T ss_pred HHHhCCCcE
Confidence 999886533
No 101
>1va8_A Maguk P55 subfamily member 5; PDZ domain, palmitoylated 5, PALS1 protein, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.36.1.1
Probab=99.30 E-value=1.8e-11 Score=98.59 Aligned_cols=84 Identities=25% Similarity=0.371 Sum_probs=71.0
Q ss_pred ceEEEEEeeCCCCcceeEEEeccCCCCCeEEEEeCCCCHHHHcCC-CCCCEEEEECCEEcCCCCHHHHHHHHHhCCCCeE
Q psy10428 8 VVRLCHILKWTDFDGYGFNLHGEKGKTGQYIGKVDEGSPAEAAGL-KEGDHIIEVNSVNICNENHNQVVQRIKAVPDETK 86 (309)
Q Consensus 8 ~pR~v~L~K~~~~~G~GFsl~ggk~~~Gi~V~~V~pgSpA~~AGL-q~GD~Il~VNG~~V~~~sh~dvv~~Lk~s~~~vv 86 (309)
.+|.|.|.|.. ..+|||.+.+. ..+++|..|.+++||+++|| ++||+|++|||..|.+.+|.++..+|+..++. +
T Consensus 25 ~~~~v~l~k~~-~~~lG~~i~~~--~~gv~V~~V~~~spA~~aGll~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~~-v 100 (113)
T 1va8_A 25 TVKIVRIEKAR-DIPLGATVRNE--MDSVIISRIVKGGAAEKSGLLHEGDEVLEINGIEIRGKDVNEVFDLLSDMHGT-L 100 (113)
T ss_dssp ECEEEEEEECT-TCCCCEEEEEC--SSSEEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTCCHHHHHHHHHHCCEE-E
T ss_pred ceEEEEEEeCC-CCceeEEEEeC--CCCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCe-E
Confidence 67889999986 24999999876 35899999999999999998 99999999999999888999999999887654 4
Q ss_pred EEEEEeCCe
Q psy10428 87 LLVVDVASE 95 (309)
Q Consensus 87 llvv~r~~~ 95 (309)
.+.+.+.+.
T Consensus 101 ~l~v~r~~~ 109 (113)
T 1va8_A 101 TFVLIPSSG 109 (113)
T ss_dssp EEEEECCCC
T ss_pred EEEEEECCc
Confidence 455555543
No 102
>1vae_A Rhophilin 2, rhophilin, RHO GTPase binding protein 2; PDZ domain, intracellular signaling cascade, signal transduction; NMR {Mus musculus} SCOP: b.36.1.1
Probab=99.30 E-value=1.6e-12 Score=105.22 Aligned_cols=84 Identities=25% Similarity=0.262 Sum_probs=71.4
Q ss_pred CCCCceEEEEEeeCCCCcceeEEEeccCCCCCeEEEEeCCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCC
Q psy10428 4 DKTPVVRLCHILKWTDFDGYGFNLHGEKGKTGQYIGKVDEGSPAEAAGLKEGDHIIEVNSVNICNENHNQVVQRIKAVPD 83 (309)
Q Consensus 4 ~~~~~pR~v~L~K~~~~~G~GFsl~ggk~~~Gi~V~~V~pgSpA~~AGLq~GD~Il~VNG~~V~~~sh~dvv~~Lk~s~~ 83 (309)
..|..+|.|+|.|+. .+|||.+.+. .+++|..|.+++||+++||+.||+|++|||.+|.+.+|.++..+|+...+
T Consensus 11 ~~~~~~r~v~l~~~~--~~~G~~l~~~---~~v~V~~V~~~spA~~aGL~~GD~Il~InG~~v~~~~~~d~~~~i~~~~~ 85 (111)
T 1vae_A 11 KRWSPPRGIHFTVEE--GDLGFTLRGN---TPVQVHFLDPHCSASLAGAKEGDYIVSIQGVDCKWLTVSEVMKLLKSFGG 85 (111)
T ss_dssp CEECCCCCCCEECCS--SCCSCCEESS---SSCEECCCCTTSSHHHHHCCTTCEEEEETTEECSSCCHHHHHHHHHHTTT
T ss_pred cCCCCCeEEEEEcCC--CcccEEEeCC---CCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCC
Confidence 457788999999976 8999998765 47899999999999999999999999999999977799999999988776
Q ss_pred CeEEEEEEe
Q psy10428 84 ETKLLVVDV 92 (309)
Q Consensus 84 ~vvllvv~r 92 (309)
..+.+.+.+
T Consensus 86 ~~v~l~V~~ 94 (111)
T 1vae_A 86 EEVEMKVVS 94 (111)
T ss_dssp SEECEEEEC
T ss_pred ceEEEEEEe
Confidence 544444443
No 103
>2q3g_A PDZ and LIM domain protein 7; structural genomics, structural genomics consortium, SGC; 1.11A {Homo sapiens}
Probab=99.30 E-value=1.8e-11 Score=93.89 Aligned_cols=81 Identities=22% Similarity=0.327 Sum_probs=65.5
Q ss_pred eEEEEEeeCCCCcceeEEEeccCC-CCCeEEEEeCCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCCeEE
Q psy10428 9 VRLCHILKWTDFDGYGFNLHGEKG-KTGQYIGKVDEGSPAEAAGLKEGDHIIEVNSVNICNENHNQVVQRIKAVPDETKL 87 (309)
Q Consensus 9 pR~v~L~K~~~~~G~GFsl~ggk~-~~Gi~V~~V~pgSpA~~AGLq~GD~Il~VNG~~V~~~sh~dvv~~Lk~s~~~vvl 87 (309)
+..+.+.+ + .+|||.+.++.. ..+++|..|.++|||+++||++||+|++|||.++.+.+|.++..+++..+.. +.
T Consensus 4 ~~~v~~~~-~--~~~G~~l~gg~~~~~~v~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~~~~~g~~-v~ 79 (89)
T 2q3g_A 4 SFKVVLEG-P--APWGFRLQGGKDFNVPLSISRLTPGGKAAQAGVAVGDWVLSIDGENAGSLTHIEAQNKIRACGER-LS 79 (89)
T ss_dssp EEEEEEES-S--SCCCEEEEEEGGGTEEEEEEEECTTSHHHHTTCCTTCEEEEETTEEGGGCCHHHHHHHHHTCTTE-EE
T ss_pred EEEEEEcC-C--CcccEEEECcCCCCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCE-EE
Confidence 34566653 3 799999988654 3478999999999999999999999999999999888999999999877544 44
Q ss_pred EEEEeC
Q psy10428 88 LVVDVA 93 (309)
Q Consensus 88 lvv~r~ 93 (309)
+.+.|.
T Consensus 80 l~v~R~ 85 (89)
T 2q3g_A 80 LGLSRA 85 (89)
T ss_dssp EEEEEE
T ss_pred EEEEeC
Confidence 555554
No 104
>2gzv_A PRKCA-binding protein; protein kinase C, PDZ domain, structural genomics, structura genomics consortium, SGC, signaling protein; 1.12A {Homo sapiens} PDB: 2pku_A
Probab=99.30 E-value=2.5e-11 Score=98.31 Aligned_cols=84 Identities=24% Similarity=0.281 Sum_probs=70.4
Q ss_pred CCceEEEEEeeCCCCcceeEEEeccCCC-CCeEEEEeCCCCHHHHcC-CCCCCEEEEECCEEcCCCCHHHHHHHHHhCCC
Q psy10428 6 TPVVRLCHILKWTDFDGYGFNLHGEKGK-TGQYIGKVDEGSPAEAAG-LKEGDHIIEVNSVNICNENHNQVVQRIKAVPD 83 (309)
Q Consensus 6 ~~~pR~v~L~K~~~~~G~GFsl~ggk~~-~Gi~V~~V~pgSpA~~AG-Lq~GD~Il~VNG~~V~~~sh~dvv~~Lk~s~~ 83 (309)
...+|.|.|.|++ ..+|||.+.++... .+++|..|.++|||+++| |++||+|++|||.++.+.++.++..+|+..++
T Consensus 22 ~~~~~~V~l~~~~-~~~lG~~l~~~~~~~~~~~V~~V~~gspA~~aG~L~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~~ 100 (114)
T 2gzv_A 22 SMVPGKVTLQKDA-QNLIGISIGGGAQYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKG 100 (114)
T ss_dssp CCCCEEEEEECCT-TSCCSEEEEECCC--CCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHCCS
T ss_pred cCCCEEEEEEECC-CCcEeEEEEeCCCCCCCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCC
Confidence 3467999999986 35699999877543 479999999999999999 99999999999999999999999999988765
Q ss_pred CeEEEEEE
Q psy10428 84 ETKLLVVD 91 (309)
Q Consensus 84 ~vvllvv~ 91 (309)
.+ .+.+.
T Consensus 101 ~v-~l~v~ 107 (114)
T 2gzv_A 101 EV-TIHYN 107 (114)
T ss_dssp EE-EEEEE
T ss_pred eE-EEEEE
Confidence 43 34443
No 105
>1v62_A KIAA1719 protein; structural genomics, synaptic transmission, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.30 E-value=1.5e-11 Score=99.79 Aligned_cols=87 Identities=17% Similarity=0.232 Sum_probs=72.1
Q ss_pred CCCceEEEEEeeCCCCcceeEEEeccCC--CCCeEEEEeCCCCHHHHcC-CCCCCEEEEECCEEcCCCCHHHHHHHHHhC
Q psy10428 5 KTPVVRLCHILKWTDFDGYGFNLHGEKG--KTGQYIGKVDEGSPAEAAG-LKEGDHIIEVNSVNICNENHNQVVQRIKAV 81 (309)
Q Consensus 5 ~~~~pR~v~L~K~~~~~G~GFsl~ggk~--~~Gi~V~~V~pgSpA~~AG-Lq~GD~Il~VNG~~V~~~sh~dvv~~Lk~s 81 (309)
.+..++.|.|.|.. ..+|||.+.++.. ..+++|..|.+++||+++| |++||+|++|||.++.+.+|+++..+|+..
T Consensus 12 ~~~~~~~v~l~k~~-~~~lG~~i~~~~~~~~~~~~V~~V~~~spA~~aG~l~~GD~Il~Ing~~v~~~~~~~~~~~l~~~ 90 (117)
T 1v62_A 12 NASGPLMVEIVKTP-GSALGISLTTTSLRNKSVITIDRIKPASVVDRSGALHPGDHILSIDGTSMEHCSLLEATKLLASI 90 (117)
T ss_dssp CSSSSEEEEEECCT-TCCCCCEEEEECCSSSCEEEEEECCTTSHHHHHTCCCTTCBEEEETTEETTSCCHHHHHHHHHSC
T ss_pred CCCCcEEEEEEcCC-CCcccEEEEccCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Confidence 35678999999974 3689999988643 2349999999999999999 999999999999999999999999999965
Q ss_pred CCCeEEEEEEeC
Q psy10428 82 PDETKLLVVDVA 93 (309)
Q Consensus 82 ~~~vvllvv~r~ 93 (309)
+ ..+.+.+.|.
T Consensus 91 g-~~v~l~v~r~ 101 (117)
T 1v62_A 91 S-EKVRLEILPV 101 (117)
T ss_dssp S-SEEEEEECCB
T ss_pred C-CeEEEEEEEC
Confidence 4 4445555554
No 106
>3khf_A Microtubule-associated serine/threonine-protein kinase 3; MAST3, microtubule associated serine/threonine kinase 3, PDZ domain, structural genomics; 1.20A {Homo sapiens} PDB: 2w7r_A 2kqf_A 2kyl_A 3ps4_A
Probab=99.30 E-value=1.2e-11 Score=96.80 Aligned_cols=81 Identities=26% Similarity=0.340 Sum_probs=65.0
Q ss_pred EEEEeeCCCCcceeEEEeccCCC--------CCeEEEEeCCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCC
Q psy10428 11 LCHILKWTDFDGYGFNLHGEKGK--------TGQYIGKVDEGSPAEAAGLKEGDHIIEVNSVNICNENHNQVVQRIKAVP 82 (309)
Q Consensus 11 ~v~L~K~~~~~G~GFsl~ggk~~--------~Gi~V~~V~pgSpA~~AGLq~GD~Il~VNG~~V~~~sh~dvv~~Lk~s~ 82 (309)
.+.|.+.. .+|||.+.+.... .|++|..|.++|||+++||+.||+|++|||.++.+.+|.++..+++..+
T Consensus 5 ~v~l~~~~--~~~Gf~l~~~~~~~~~~~~~~~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~g 82 (99)
T 3khf_A 5 PIVIHSSG--KKYGFSLRAIRVYMGDSDVYTVHHVVWSVEDGSPAQEAGLRAGDLITHINGESVLGLVHMDVVELLLKSG 82 (99)
T ss_dssp CEEEEC-C--CCCCEEEEEEEEESSSSSCEEEEEEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHHHSC
T ss_pred CEEEEeCC--CCCcEEEEecccccCccccccCCeEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHhcCC
Confidence 46677765 8999999865421 2568999999999999999999999999999998889999999999765
Q ss_pred CCeEEEEEEeCC
Q psy10428 83 DETKLLVVDVAS 94 (309)
Q Consensus 83 ~~vvllvv~r~~ 94 (309)
.. +.+.+.|.+
T Consensus 83 ~~-v~l~v~r~~ 93 (99)
T 3khf_A 83 NK-ISLRTTALE 93 (99)
T ss_dssp SE-EEEEEECSC
T ss_pred CE-EEEEEEECC
Confidence 44 455566644
No 107
>2dm8_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}
Probab=99.30 E-value=9.1e-12 Score=100.18 Aligned_cols=86 Identities=29% Similarity=0.416 Sum_probs=72.6
Q ss_pred CceEEEEEeeCCCCcceeEEEeccCCC--CCeEEEEeCCCCHHHHcC-CCCCCEEEEECCEEcCCCCHHHHHHHHHhCCC
Q psy10428 7 PVVRLCHILKWTDFDGYGFNLHGEKGK--TGQYIGKVDEGSPAEAAG-LKEGDHIIEVNSVNICNENHNQVVQRIKAVPD 83 (309)
Q Consensus 7 ~~pR~v~L~K~~~~~G~GFsl~ggk~~--~Gi~V~~V~pgSpA~~AG-Lq~GD~Il~VNG~~V~~~sh~dvv~~Lk~s~~ 83 (309)
++.+.+.|.+.. .+|||.+.++... .+++|..|.++|||+++| |++||+|++|||+++.+.+|.+++.+++..+
T Consensus 16 ~~~~~v~l~~~~--~glG~~l~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~l~~~~- 92 (116)
T 2dm8_A 16 GQEMIIEISKGR--SGLGLSIVGGKDTPLNAIVIHEVYEEGAAARDGRLWAGDQILEVNGVDLRNSSHEEAITALRQTP- 92 (116)
T ss_dssp TSCEEEEEECCS--SCCCCCCBCCTTSSCSSEECCCCCSSSHHHHHTCCCTTCEEEEETTEECSSSCHHHHHHHHHTCC-
T ss_pred CCEEEEEEEECC--CcccEEEeCCCCCCcCCEEEEEECCCChHHhCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC-
Confidence 456889998876 8999999877543 489999999999999999 9999999999999998888999999998876
Q ss_pred CeEEEEEEeCCe
Q psy10428 84 ETKLLVVDVASE 95 (309)
Q Consensus 84 ~vvllvv~r~~~ 95 (309)
..+.+.+.|.+.
T Consensus 93 ~~v~l~v~R~~~ 104 (116)
T 2dm8_A 93 QKVRLVVYRDEA 104 (116)
T ss_dssp SEEEEEEECCSS
T ss_pred CeEEEEEEeCCc
Confidence 444566666543
No 108
>2dmz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}
Probab=99.30 E-value=2e-11 Score=100.18 Aligned_cols=87 Identities=22% Similarity=0.279 Sum_probs=70.5
Q ss_pred CCceEEEEEeeCCCCcceeEEEeccCC------CCCeEEEEeCCCCHHHHcC-CCCCCEEEEECCEEcCCCCHHHHHHHH
Q psy10428 6 TPVVRLCHILKWTDFDGYGFNLHGEKG------KTGQYIGKVDEGSPAEAAG-LKEGDHIIEVNSVNICNENHNQVVQRI 78 (309)
Q Consensus 6 ~~~pR~v~L~K~~~~~G~GFsl~ggk~------~~Gi~V~~V~pgSpA~~AG-Lq~GD~Il~VNG~~V~~~sh~dvv~~L 78 (309)
...++.|.|.+.. ..+|||.+.++.+ ..+++|..|.++|||+++| |++||+|++|||.++.+.+|.++..+|
T Consensus 13 ~~~~~~v~l~~~~-~~~lG~~i~~~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~l 91 (129)
T 2dmz_A 13 LFETYNVELVRKD-GQSLGIRIVGYVGTSHTGEASGIYVKSVIPGSAAYHNGHIQVNDKIVAVDGVNIQGFANHDVVEVL 91 (129)
T ss_dssp CEEEEEEEECCCT-TCCCCEEEEEECCCSSSCCCCEEEEEEECTTSHHHHHTCCCSSCBEEEETTBCCTTCCHHHHHHHH
T ss_pred CCcEEEEEEEeCC-CCCcCEEEEeecCCcccCCCCCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHH
Confidence 4467788886643 4899999988542 3589999999999999999 999999999999999888899999999
Q ss_pred HhCCCCeEEEEEEeCC
Q psy10428 79 KAVPDETKLLVVDVAS 94 (309)
Q Consensus 79 k~s~~~vvllvv~r~~ 94 (309)
+..+..+ .+.+.|.+
T Consensus 92 ~~~~~~v-~l~v~R~~ 106 (129)
T 2dmz_A 92 RNAGQVV-HLTLVRRK 106 (129)
T ss_dssp HHCCSSE-EEEEEEES
T ss_pred HcCCCeE-EEEEEeCC
Confidence 8854445 44555543
No 109
>2edv_A FERM and PDZ domain-containing protein 1; cytoskeletal-associated protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.29 E-value=3.2e-12 Score=100.16 Aligned_cols=88 Identities=22% Similarity=0.262 Sum_probs=73.5
Q ss_pred CCCCCCceEEEEEeeCCCCcceeEEEeccCCCCCeEEEEeCCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHhC
Q psy10428 2 SEDKTPVVRLCHILKWTDFDGYGFNLHGEKGKTGQYIGKVDEGSPAEAAGLKEGDHIIEVNSVNICNENHNQVVQRIKAV 81 (309)
Q Consensus 2 ~e~~~~~pR~v~L~K~~~~~G~GFsl~ggk~~~Gi~V~~V~pgSpA~~AGLq~GD~Il~VNG~~V~~~sh~dvv~~Lk~s 81 (309)
|...++.+|.|.|.|.+...+|||.+.+. .+++|..|.++|||+ +||++||+|++|||.+|.+.+|.+++.+++..
T Consensus 2 ssg~~~~~~~v~l~~~~~~~~~G~~l~~~---~~~~V~~V~~~spA~-agL~~GD~Il~ing~~v~~~~~~~~~~~~~~~ 77 (96)
T 2edv_A 2 SSGSSGVRHTVKIDKDTLLQDYGFHISES---LPLTVVAVTAGGSAH-GKLFPGDQILQMNNEPAEDLSWERAVDILREA 77 (96)
T ss_dssp CCCSSCEEEEEEECCCSSSCSCSBCCCSS---SSCBCCCBCSSSSST-TTSCTTCBEEEESSCBSTTCCHHHHHHHHHHC
T ss_pred CCCCCCccEEEEEEECCCCCcccEEEecC---CCeEEEEECCCCchh-hCCCCCCEEEEECCEECCCCCHHHHHHHHHcC
Confidence 45567889999999987555899998873 589999999999996 99999999999999999989999999999886
Q ss_pred CCCeEEEEEEeCC
Q psy10428 82 PDETKLLVVDVAS 94 (309)
Q Consensus 82 ~~~vvllvv~r~~ 94 (309)
+..+ .+.+.|..
T Consensus 78 g~~v-~l~v~R~~ 89 (96)
T 2edv_A 78 EDSL-SITVVRCT 89 (96)
T ss_dssp SSCE-EEEEEECC
T ss_pred CCeE-EEEEEECC
Confidence 5555 44555543
No 110
>2vz5_A TAX1-binding protein 3; WNT signaling pathway, protein binding, nucleus, cytoplasm, PDZ domain; 1.74A {Homo sapiens} PDB: 3dj1_A 3diw_A 2l4s_A 2l4t_A 3gj9_A 2kg2_A 3dj3_A
Probab=99.29 E-value=2.1e-11 Score=102.23 Aligned_cols=92 Identities=32% Similarity=0.463 Sum_probs=72.5
Q ss_pred CCceEEEEEeeCC--CCcceeEEEeccCC-------------CCCeEEEEeCCCCHHHHcCCCCCCEEEEECCEEcCCCC
Q psy10428 6 TPVVRLCHILKWT--DFDGYGFNLHGEKG-------------KTGQYIGKVDEGSPAEAAGLKEGDHIIEVNSVNICNEN 70 (309)
Q Consensus 6 ~~~pR~v~L~K~~--~~~G~GFsl~ggk~-------------~~Gi~V~~V~pgSpA~~AGLq~GD~Il~VNG~~V~~~s 70 (309)
.+..|.|.|.+.. ...+|||.+.++.+ ..|++|..|.++|||+++||++||+|++|||.++.+.+
T Consensus 21 ~~~~~~v~l~~~~~~~~~~lG~~i~~g~~~~~~~~~~~~~~~~~gv~V~~V~~~spA~~aGL~~GD~I~~vng~~v~~~~ 100 (139)
T 2vz5_A 21 QSMVQRVEIHKLRQGENLILGFSIGGGIDQDPSQNPFSEDKTDKGIYVTRVSEGGPAEIAGLQIGDKIMQVNGWDMTMVT 100 (139)
T ss_dssp -CEEEEEEEECEEETTEEECSEEEEECTTSCGGGCSSCSSTTCCCEEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCC
T ss_pred CCceEEEEEEEcCCCCcccccEEEEccccCChhhhhhcccCCCCCEEEEEECCCCHHHHCCCCCCCEEEEECCEEcCCCC
Confidence 4567888887743 12379999987543 36899999999999999999999999999999998889
Q ss_pred HHHHHHHHHhCCCCeEEEEEEeCCeee
Q psy10428 71 HNQVVQRIKAVPDETKLLVVDVASEEY 97 (309)
Q Consensus 71 h~dvv~~Lk~s~~~vvllvv~r~~~~~ 97 (309)
+.++..+|+...+..+.+.+.|++...
T Consensus 101 ~~~~~~~l~~~~g~~v~l~v~R~g~~~ 127 (139)
T 2vz5_A 101 HDQARKRLTKRSEEVVRLLVTRQSLQK 127 (139)
T ss_dssp HHHHHHHHCCTTCSEEEEEEEECC---
T ss_pred HHHHHHHHHhCCCCEEEEEEEECCEEE
Confidence 999999998765666667777766543
No 111
>2fcf_A Multiple PDZ domain protein; adaptor molecule, protein linker, structural genomics, struc genomics consortium, SGC, structural protein; 1.76A {Homo sapiens} SCOP: b.36.1.1
Probab=99.29 E-value=3.1e-11 Score=94.88 Aligned_cols=84 Identities=29% Similarity=0.502 Sum_probs=68.4
Q ss_pred ceEEEEEeeCCCCcceeEEEeccCC----------CCCeEEEEeCCCCHHHHcC-CCCCCEEEEECCEEcCCCCHHHHHH
Q psy10428 8 VVRLCHILKWTDFDGYGFNLHGEKG----------KTGQYIGKVDEGSPAEAAG-LKEGDHIIEVNSVNICNENHNQVVQ 76 (309)
Q Consensus 8 ~pR~v~L~K~~~~~G~GFsl~ggk~----------~~Gi~V~~V~pgSpA~~AG-Lq~GD~Il~VNG~~V~~~sh~dvv~ 76 (309)
.|+.+.|.+.. ...|||.+.+..+ ..|++|..|.++|||+++| |++||+|++|||.++.+.++.++..
T Consensus 4 dp~~v~l~~~~-~~~lG~~~~~~~~~~~~~~~~~~~~g~~V~~V~~~spA~~aG~l~~GD~I~~ing~~v~~~~~~~~~~ 82 (103)
T 2fcf_A 4 QPRRVELWREP-SKSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQAVE 82 (103)
T ss_dssp SCEEEEECCCC--CCCCEEEECCCC-------------EEEEEECSSSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHH
T ss_pred CCEEEEEEeCC-CCceeEEEEccCCCCcccccCCCCCCEEEEEeCCCCcHHHcCCCCCCCEEEEECCEECCCCCHHHHHH
Confidence 57889998874 4689999987643 1479999999999999999 9999999999999998888999999
Q ss_pred HHHhCCCCeEEEEEEeC
Q psy10428 77 RIKAVPDETKLLVVDVA 93 (309)
Q Consensus 77 ~Lk~s~~~vvllvv~r~ 93 (309)
+|+..++.+ .+.+.|.
T Consensus 83 ~l~~~~~~v-~l~v~r~ 98 (103)
T 2fcf_A 83 AIRKAGNPV-VFMVQSI 98 (103)
T ss_dssp HHHTCCSSE-EEEEECC
T ss_pred HHHhCCCcE-EEEEEEC
Confidence 999886644 4555553
No 112
>2w4f_A Protein LAP4; structural protein, phosphoprotein, UBL conjugation, leucine-rich repeat, alternative splicing, cytoplasm, circletail, coiled coil; 1.30A {Homo sapiens}
Probab=99.29 E-value=5e-11 Score=92.60 Aligned_cols=84 Identities=31% Similarity=0.526 Sum_probs=68.5
Q ss_pred eEEEEEeeCCCCcceeEEEeccCC-------CCCeEEEEeCCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHhC
Q psy10428 9 VRLCHILKWTDFDGYGFNLHGEKG-------KTGQYIGKVDEGSPAEAAGLKEGDHIIEVNSVNICNENHNQVVQRIKAV 81 (309)
Q Consensus 9 pR~v~L~K~~~~~G~GFsl~ggk~-------~~Gi~V~~V~pgSpA~~AGLq~GD~Il~VNG~~V~~~sh~dvv~~Lk~s 81 (309)
...+.+.+.. .+|||.+.++.. ..+++|..|.++|||+++||++||+|++|||.++.+..+.+++..++..
T Consensus 4 ~~~v~~~~~~--~glG~~i~~g~~~~~~~~~~~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~~~~~ 81 (97)
T 2w4f_A 4 ELTLTILRQT--GGLGISIAGGKGSTPYKGDDEGIFISRVSEEGPAARAGVRVGDKLLEVNGVALQGAEHHEAVEALRGA 81 (97)
T ss_dssp EEEEEEECBT--TBSSEEEEECTTSCCSBTTBCSEEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHHTS
T ss_pred EEEEEEEeCC--CceeEEEECCccCCcccCCCCCEEEEEECCCChHHHcCCCCCCEEEEECCEECCCcCHHHHHHHHhCC
Confidence 4567777764 899999987643 3689999999999999999999999999999999888888877777775
Q ss_pred CCCeEEEEEEeCCe
Q psy10428 82 PDETKLLVVDVASE 95 (309)
Q Consensus 82 ~~~vvllvv~r~~~ 95 (309)
+..+.+.+.|++.
T Consensus 82 -g~~v~l~v~R~g~ 94 (97)
T 2w4f_A 82 -GTAVQMRVWRERE 94 (97)
T ss_dssp -CSEEEEEEECCSS
T ss_pred -CCeEEEEEEeCCc
Confidence 4555666676553
No 113
>3egg_C Spinophilin; PP1, serine/threonine phosphatase, post synapti density, glutametergic receptors, carbohydrate metabolism, cycle, cell division; HET: MES; 1.85A {Rattus norvegicus} PDB: 3egh_C* 3hvq_C 2fn5_A
Probab=99.28 E-value=2.2e-11 Score=105.80 Aligned_cols=82 Identities=17% Similarity=0.340 Sum_probs=69.1
Q ss_pred ceEEEEEeeCCCCcceeEEEec---cC----CCCCeEEEEeCCCCHHHHcC-CCCCCEEEEECCEEcCCCCHHHHHHHHH
Q psy10428 8 VVRLCHILKWTDFDGYGFNLHG---EK----GKTGQYIGKVDEGSPAEAAG-LKEGDHIIEVNSVNICNENHNQVVQRIK 79 (309)
Q Consensus 8 ~pR~v~L~K~~~~~G~GFsl~g---gk----~~~Gi~V~~V~pgSpA~~AG-Lq~GD~Il~VNG~~V~~~sh~dvv~~Lk 79 (309)
....+.|.|+. .||||+|.+ +. ...+++|..|.++|||+++| |++||+|++|||..+.+.+|.+++.+|+
T Consensus 80 ~~~~v~l~k~~--~glG~~i~g~~~g~~~~~~~~gi~V~~V~~gspA~~aG~L~~GD~Il~VNG~~v~~~~~~~~~~~l~ 157 (170)
T 3egg_C 80 ELFPVELEKDS--EGLGISIIGMGAGADMGLEKLGIFVKTVTEGGAAHRDGRIQVNDLLVEVDGTSLVGVTQSFAASVLR 157 (170)
T ss_dssp EEEEEEEECBT--TBSSEEEEEECSSSSCCSSSBEEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTBCHHHHHHHHH
T ss_pred eEEEEEEEeCC--CeEeEEEEecccCCccccCCCCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence 44668888887 799999998 22 23579999999999999999 9999999999999999999999999999
Q ss_pred hCCCCeEEEEEEe
Q psy10428 80 AVPDETKLLVVDV 92 (309)
Q Consensus 80 ~s~~~vvllvv~r 92 (309)
..+..+ .+++.|
T Consensus 158 ~~g~~v-~L~V~R 169 (170)
T 3egg_C 158 NTKGRV-RFMIGR 169 (170)
T ss_dssp HCCSEE-EEEEEE
T ss_pred cCCCEE-EEEEEe
Confidence 976544 455554
No 114
>3e17_A Tight junction protein ZO-2; domain swapping, alternative promoter usage, alternative splicing, cell junction, cell membrane, disease mutation; 1.75A {Homo sapiens}
Probab=99.28 E-value=2.1e-11 Score=94.12 Aligned_cols=73 Identities=22% Similarity=0.340 Sum_probs=62.7
Q ss_pred EEEeeCCCCcceeEEEeccCCCCCeEEEEeCCCCHHHHcC-CCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCCeEEEE
Q psy10428 12 CHILKWTDFDGYGFNLHGEKGKTGQYIGKVDEGSPAEAAG-LKEGDHIIEVNSVNICNENHNQVVQRIKAVPDETKLLV 89 (309)
Q Consensus 12 v~L~K~~~~~G~GFsl~ggk~~~Gi~V~~V~pgSpA~~AG-Lq~GD~Il~VNG~~V~~~sh~dvv~~Lk~s~~~vvllv 89 (309)
+.|.+.....+|||.+.+ +++|..|.++|||+++| |+.||+|++|||.++.+.+|+++..+|+..++.+.+.+
T Consensus 4 v~l~~~~~~~~~G~~~~~-----gv~V~~V~~gspA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~i~~~~~~v~L~v 77 (88)
T 3e17_A 4 VLLMKSRANEEYGLRLGS-----QIFVKEMTRTGLATKDGNLHEGDIILKINGTVTENMSLTDARKLIEKSRGKLQLVV 77 (88)
T ss_dssp EEEECBTTBCCCCEEEEE-----EEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHTTTEEEEEE
T ss_pred EEEEeCCCCCCCCEEEeC-----CEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEE
Confidence 456664445789999875 59999999999999999 99999999999999999999999999999877654444
No 115
>2eeh_A PDZ domain-containing protein 7; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.28 E-value=4.2e-11 Score=94.05 Aligned_cols=87 Identities=26% Similarity=0.424 Sum_probs=71.0
Q ss_pred CCceEEEEEeeCCCCcceeEEEeccCC-CCCeEEEEeCCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCC
Q psy10428 6 TPVVRLCHILKWTDFDGYGFNLHGEKG-KTGQYIGKVDEGSPAEAAGLKEGDHIIEVNSVNICNENHNQVVQRIKAVPDE 84 (309)
Q Consensus 6 ~~~pR~v~L~K~~~~~G~GFsl~ggk~-~~Gi~V~~V~pgSpA~~AGLq~GD~Il~VNG~~V~~~sh~dvv~~Lk~s~~~ 84 (309)
...+|.|.|.|.+ ...|||.+..... ..+++|..|.++|||+++||++||+|++|||.++...++.+++..++. + .
T Consensus 8 ~~~~~~v~l~~~~-~~~lG~~~~~~~~~~~gv~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~~~~-~-~ 84 (100)
T 2eeh_A 8 SDIIHSVRVEKSP-AGRLGFSVRGGSEHGLGIFVSKVEEGSSAERAGLCVGDKITEVNGLSLESTTMGSAVKVLTS-S-S 84 (100)
T ss_dssp CCEECCEEECCCS-SSSCSEEEECCTTTTCCEEEEEECTTSHHHHHTCCSSCEEEEETTEECSSCCHHHHHHHHHS-C-S
T ss_pred CCeEEEEEEEECC-CCCccEEEEccccCCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHhhcC-C-C
Confidence 4578889999875 2459999987643 358999999999999999999999999999999988889999999887 3 4
Q ss_pred eEEEEEEeCCe
Q psy10428 85 TKLLVVDVASE 95 (309)
Q Consensus 85 vvllvv~r~~~ 95 (309)
.+.+.+.|++.
T Consensus 85 ~v~l~v~R~g~ 95 (100)
T 2eeh_A 85 RLHMMVRRMGS 95 (100)
T ss_dssp SEEEEEEECSC
T ss_pred EEEEEEEECCc
Confidence 44556666543
No 116
>2e7k_A Maguk P55 subfamily member 2; PDZ domain, MPP2 protein, discs large homolog 2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.27 E-value=1.7e-11 Score=95.13 Aligned_cols=81 Identities=20% Similarity=0.245 Sum_probs=68.0
Q ss_pred CCceEEEEEeeCCCCcceeEEEeccCCCCCeEEEEeCCCCHHHHcC-CCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCC
Q psy10428 6 TPVVRLCHILKWTDFDGYGFNLHGEKGKTGQYIGKVDEGSPAEAAG-LKEGDHIIEVNSVNICNENHNQVVQRIKAVPDE 84 (309)
Q Consensus 6 ~~~pR~v~L~K~~~~~G~GFsl~ggk~~~Gi~V~~V~pgSpA~~AG-Lq~GD~Il~VNG~~V~~~sh~dvv~~Lk~s~~~ 84 (309)
...+|+|.|.|.+ ..+|||.+.+. ..+++|..|.++|||+++| |++||+|++|||.++ +.+|+++..+|+..++.
T Consensus 4 ~~~~r~v~l~k~~-~~~lG~~i~~~--~~~v~V~~V~~~spA~~ag~L~~GD~I~~ing~~v-~~~~~~~~~~l~~~~~~ 79 (91)
T 2e7k_A 4 GSSGRMVGIRKTA-GEHLGVTFRVE--GGELVIARILHGGMVAQQGLLHVGDIIKEVNGQPV-GSDPRALQELLRNASGS 79 (91)
T ss_dssp CCCSCBCCBCCCT-TCCCCEEEEES--SSSEEEEEECSSSHHHHHCCCCTTCEEEEETTEEC-TTCHHHHHHHHHTCCSS
T ss_pred CCCcEEEEEEECC-CCcEeEEEEec--CCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEEC-CCCHHHHHHHHHcCCCe
Confidence 3467889998763 37899999874 4589999999999999987 999999999999999 99999999999987665
Q ss_pred eEEEEE
Q psy10428 85 TKLLVV 90 (309)
Q Consensus 85 vvllvv 90 (309)
+.+.++
T Consensus 80 v~l~v~ 85 (91)
T 2e7k_A 80 VILKIL 85 (91)
T ss_dssp BCEEEE
T ss_pred EEEEEE
Confidence 544433
No 117
>2h2b_A Tight junction protein ZO-1; PDZ domain, phage derived high affinity ligand, cell adhesio; 1.60A {Homo sapiens} PDB: 2h2c_A 2h3m_A 2rrm_A
Probab=99.27 E-value=4.1e-11 Score=94.96 Aligned_cols=86 Identities=23% Similarity=0.323 Sum_probs=69.2
Q ss_pred CCceEEEEEeeCCCCcceeEEEeccCC-------CCCeEEEEeCCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHH
Q psy10428 6 TPVVRLCHILKWTDFDGYGFNLHGEKG-------KTGQYIGKVDEGSPAEAAGLKEGDHIIEVNSVNICNENHNQVVQRI 78 (309)
Q Consensus 6 ~~~pR~v~L~K~~~~~G~GFsl~ggk~-------~~Gi~V~~V~pgSpA~~AGLq~GD~Il~VNG~~V~~~sh~dvv~~L 78 (309)
..+++.|.|.|.+ +.+|||.+.++.. ..+++|..|.++|||+ +||++||+|++|||.++.+.++.+.+..+
T Consensus 5 ~~~~~~v~l~k~~-~~glG~~i~~~~~~~~~~~~~~gv~V~~V~~~spA~-agl~~GD~I~~vng~~v~~~~~~~~~~~~ 82 (107)
T 2h2b_A 5 IWEQHTVTLHRAP-GFGFGIAISGGRDNPHFQSGETSIVISDVLKGGPAE-GQLQENDRVAMVNGVSMDNVEHAFAVQQL 82 (107)
T ss_dssp CEEEEEEEEECBT-TTBTCEEEEECTTSCCTTTCCCCEEEEEECTTSTTB-TTBCTTCEEEEETTEECTTCCHHHHHHHH
T ss_pred cceeEEEEEEeCC-CCccCEEEecCcCCCcccCCCCCEEEEEECCCCchh-hCCCCCCEEEEECCEECCCccHHHHHHHh
Confidence 4467999999984 4799999998764 3489999999999999 99999999999999999888777777777
Q ss_pred HhCCCCeEEEEEEeCC
Q psy10428 79 KAVPDETKLLVVDVAS 94 (309)
Q Consensus 79 k~s~~~vvllvv~r~~ 94 (309)
+..+..+ .+.+.|.+
T Consensus 83 ~~~g~~v-~l~v~R~~ 97 (107)
T 2h2b_A 83 RKSGKNA-KITIRRKK 97 (107)
T ss_dssp HTCCSEE-EEEEEEES
T ss_pred hCCCCEE-EEEEEECC
Confidence 7554444 45555543
No 118
>2g5m_B Neurabin-2; spinophilin, PDZ domain, CNS, synaptic transmission, protein binding; NMR {Rattus norvegicus}
Probab=99.27 E-value=2e-11 Score=97.79 Aligned_cols=84 Identities=17% Similarity=0.351 Sum_probs=69.9
Q ss_pred ceEEEEEeeCCCCcceeEEEec---cC----CCCCeEEEEeCCCCHHHHcC-CCCCCEEEEECCEEcCCCCHHHHHHHHH
Q psy10428 8 VVRLCHILKWTDFDGYGFNLHG---EK----GKTGQYIGKVDEGSPAEAAG-LKEGDHIIEVNSVNICNENHNQVVQRIK 79 (309)
Q Consensus 8 ~pR~v~L~K~~~~~G~GFsl~g---gk----~~~Gi~V~~V~pgSpA~~AG-Lq~GD~Il~VNG~~V~~~sh~dvv~~Lk 79 (309)
..+.|.|.|.. .+|||++.+ +. ...|++|..|.++|||+++| |++||+|++|||.++.+.+|.+++.+++
T Consensus 4 ~~~~v~l~k~~--~glG~~l~~~~~~~~~~~~~~g~~V~~V~~~s~A~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~ 81 (113)
T 2g5m_B 4 ELFPVELEKDS--EGLGISIIGMGAGADMGLEKLGIFVKTVTEGGAAHRDGRIQVNDLLVEVDGTSLVGVTQSFAASVLR 81 (113)
T ss_dssp EEEEEECCCCS--SCCCCEEEEEECCCCSSSCCEEEEEEECCTTSHHHHHTCSCTTCBEEEETTEECSSCCHHHHHHHHH
T ss_pred EEEEEEEEeCC--CCCCEEEEecCCCCcCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHh
Confidence 45678888876 899999988 32 23589999999999999999 9999999999999999889999999999
Q ss_pred hCCCCeEEEEEEeCC
Q psy10428 80 AVPDETKLLVVDVAS 94 (309)
Q Consensus 80 ~s~~~vvllvv~r~~ 94 (309)
..+..+. +.+.|.+
T Consensus 82 ~~g~~v~-l~v~R~~ 95 (113)
T 2g5m_B 82 NTKGRVR-FMIGRER 95 (113)
T ss_dssp HSCSSCE-EEEEECC
T ss_pred cCCCeEE-EEEEeCC
Confidence 8865554 4455544
No 119
>1wfv_A Membrane associated guanylate kinase inverted-2; atrophin-1 interacting protein 1, activin receptor interacting protein 1; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.27 E-value=5.5e-12 Score=99.11 Aligned_cols=88 Identities=23% Similarity=0.375 Sum_probs=71.3
Q ss_pred CCCceEEEEEeeCCCCcceeEEEeccCCC-CCeEEEEeCCCCHHHHcC-CCCCCEEEEECCEEcCCCCHHHHHHHHHhCC
Q psy10428 5 KTPVVRLCHILKWTDFDGYGFNLHGEKGK-TGQYIGKVDEGSPAEAAG-LKEGDHIIEVNSVNICNENHNQVVQRIKAVP 82 (309)
Q Consensus 5 ~~~~pR~v~L~K~~~~~G~GFsl~ggk~~-~Gi~V~~V~pgSpA~~AG-Lq~GD~Il~VNG~~V~~~sh~dvv~~Lk~s~ 82 (309)
.....+.+.|.+.. .+|||.+.++... .+++|..|.++|||+++| |++||+|++|||.++.+.+|.+++.+++..+
T Consensus 8 ~~~~~~~v~l~~~~--~g~G~~~~~~~~~~~~~~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~~g 85 (103)
T 1wfv_A 8 QDFDYFTVDMEKGA--KGFGFSIRGGREYKMDLYVLRLAEDGPAIRNGRMRVGDQIIEINGESTRDMTHARAIELIKSGG 85 (103)
T ss_dssp CCSCCEECCEECCT--TSSSBCCEEETTTTEEEECCCBCTTSHHHHHCSSCTTCEEEEETTEECSSCCHHHHHHHHHHHC
T ss_pred cCceEEEEEEecCC--CcCCEEEeccccCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC
Confidence 34566778888865 7899999877542 389999999999999999 9999999999999999889999999888554
Q ss_pred CCeEEEEEEeCCe
Q psy10428 83 DETKLLVVDVASE 95 (309)
Q Consensus 83 ~~vvllvv~r~~~ 95 (309)
. .+.+.+.|.+.
T Consensus 86 ~-~v~l~v~R~~~ 97 (103)
T 1wfv_A 86 R-RVRLLLKRGTG 97 (103)
T ss_dssp S-EECEEEECTTC
T ss_pred C-eEEEEEEECCC
Confidence 4 44456666543
No 120
>2iwq_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, membrane, HOST- interaction, structural genomics consortium, synaptosome, T junction; 1.80A {Homo sapiens}
Probab=99.26 E-value=5.4e-11 Score=97.69 Aligned_cols=87 Identities=28% Similarity=0.487 Sum_probs=70.9
Q ss_pred CCCceEEEEEeeCCCCcceeEEEeccCC----------CCCeEEEEeCCCCHHHHcC-CCCCCEEEEECCEEcCCCCHHH
Q psy10428 5 KTPVVRLCHILKWTDFDGYGFNLHGEKG----------KTGQYIGKVDEGSPAEAAG-LKEGDHIIEVNSVNICNENHNQ 73 (309)
Q Consensus 5 ~~~~pR~v~L~K~~~~~G~GFsl~ggk~----------~~Gi~V~~V~pgSpA~~AG-Lq~GD~Il~VNG~~V~~~sh~d 73 (309)
.+..|+.+.+.+.. ..+|||.+.++.. ..|++|..|.++|||+++| |++||+|++|||.++.+.++.+
T Consensus 21 ~~~~p~~v~l~k~~-~~~lGi~v~~~~~~~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~~~ 99 (123)
T 2iwq_A 21 QSMQPRRVELWREP-SKSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQ 99 (123)
T ss_dssp --CCCEEEEECCCT-TSCCSEEEEECC---------CCCCSEEEEEECSSSHHHHHCCCCTTCEEEEETTEECTTCCHHH
T ss_pred ccCCCEEEEEEecC-CCCccEEEEeccCccccccccCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHH
Confidence 35678999999874 4789999976532 2489999999999999999 9999999999999998888999
Q ss_pred HHHHHHhCCCCeEEEEEEeC
Q psy10428 74 VVQRIKAVPDETKLLVVDVA 93 (309)
Q Consensus 74 vv~~Lk~s~~~vvllvv~r~ 93 (309)
+..+|+..++.+ .+.+.|.
T Consensus 100 ~~~~l~~~~~~v-~l~v~r~ 118 (123)
T 2iwq_A 100 AVEAIRKAGNPV-VFMVQSI 118 (123)
T ss_dssp HHHHHHHCCSSE-EEEEECC
T ss_pred HHHHHHcCCCeE-EEEEEEC
Confidence 999999886644 4555553
No 121
>1n7t_A 99-MER peptide of densin-180-like protein; PDZ domain, C-terminal peptide complex, high affnity ligand, signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2h3l_A
Probab=99.26 E-value=1.5e-11 Score=96.97 Aligned_cols=86 Identities=23% Similarity=0.353 Sum_probs=70.1
Q ss_pred CCCCCceEEEEEeeCCCCcceeEEEeccC---------CCCCeEEEEeCCCCHHHHcCCCCCCEEEEECCEEcCCCCHHH
Q psy10428 3 EDKTPVVRLCHILKWTDFDGYGFNLHGEK---------GKTGQYIGKVDEGSPAEAAGLKEGDHIIEVNSVNICNENHNQ 73 (309)
Q Consensus 3 e~~~~~pR~v~L~K~~~~~G~GFsl~ggk---------~~~Gi~V~~V~pgSpA~~AGLq~GD~Il~VNG~~V~~~sh~d 73 (309)
.....+...+.|.+.+ +|||++.++. ...+++|..|.++|||++ ||++||+|++|||.++.+.+|.+
T Consensus 6 ~~~~~~~~~v~l~~~~---~lG~~i~gg~~~~~~p~~~~~~gv~V~~V~~~spA~~-gL~~GD~I~~vng~~v~~~~~~~ 81 (103)
T 1n7t_A 6 HELAKQEIRVRVEKDP---ELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPASK-LLQPGDKIIQANGYSFINIEHGQ 81 (103)
T ss_dssp SSSSCCCEEEEEECSS---CCCBEEEECTTSSBCSSCSSCCSEECCCBSSSSTTSS-SCCTTCEEEEETTEECSSCCHHH
T ss_pred cCcccEEEEEEEccCC---CccEEEEcccCCCCCccccCCCCEEEEEECCCCchHH-CCCCCCEEEEECCEECCCCCHHH
Confidence 3445566778888864 8999999865 245899999999999999 99999999999999999999999
Q ss_pred HHHHHHhCCCCeEEEEEEeC
Q psy10428 74 VVQRIKAVPDETKLLVVDVA 93 (309)
Q Consensus 74 vv~~Lk~s~~~vvllvv~r~ 93 (309)
++..++..+..+ .+.+.|+
T Consensus 82 ~~~~~~~~g~~v-~l~v~R~ 100 (103)
T 1n7t_A 82 AVSLLKTFQNTV-ELIIVRE 100 (103)
T ss_dssp HHHHHHHCCSEE-EEEEECC
T ss_pred HHHHhhcCCCeE-EEEEEec
Confidence 999998765444 4555553
No 122
>1mfg_A ERB-B2 interacting protein; PDZ domain, protein-peptide complex, erbin., signaling protein; 1.25A {Homo sapiens} SCOP: b.36.1.1 PDB: 1mfl_A
Probab=99.26 E-value=4.4e-11 Score=92.82 Aligned_cols=79 Identities=27% Similarity=0.426 Sum_probs=64.9
Q ss_pred eEEEEEeeCCCCcceeEEEeccCC---------CCCeEEEEeCCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHH
Q psy10428 9 VRLCHILKWTDFDGYGFNLHGEKG---------KTGQYIGKVDEGSPAEAAGLKEGDHIIEVNSVNICNENHNQVVQRIK 79 (309)
Q Consensus 9 pR~v~L~K~~~~~G~GFsl~ggk~---------~~Gi~V~~V~pgSpA~~AGLq~GD~Il~VNG~~V~~~sh~dvv~~Lk 79 (309)
...+.|.++ .+|||.|.++.+ ..|++|..|.++|||++ ||++||+|++|||.++.+.+|.+++..++
T Consensus 4 ~~~v~l~~~---~~lG~~i~gg~~~~~~p~~~~~~gv~V~~V~~~spA~~-gL~~GD~I~~vng~~v~~~~~~~~~~~~~ 79 (95)
T 1mfg_A 4 EIRVRVEKD---PELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPASK-LLQPGDKIIQANGYSFINIEHGQAVSLLK 79 (95)
T ss_dssp EEEEEEECS---SSCSEEEEECBTSCCCSSSTTCCCEEEEEECTTSTTTT-TCCTTCEEEEETTEECTTCBHHHHHHHHH
T ss_pred EEEEEECCC---CCCCEEEeCCcCccCCccccCCCCEEEEEECCCCchhh-CCCCCCEEEEECCEEcCCCCHHHHHHHhh
Confidence 355777775 389999998752 35899999999999999 99999999999999998888999999998
Q ss_pred hCCCCeEEEEEEe
Q psy10428 80 AVPDETKLLVVDV 92 (309)
Q Consensus 80 ~s~~~vvllvv~r 92 (309)
..+..+. +.+.|
T Consensus 80 ~~~~~v~-l~v~R 91 (95)
T 1mfg_A 80 TFQNTVE-LIIVR 91 (95)
T ss_dssp HCCSEEE-EEEEE
T ss_pred cCCCeEE-EEEEe
Confidence 7655444 44444
No 123
>3sfj_A TAX1-binding protein 3; PDZ:peptide complex, signaling protein-inhibitor complex; 1.24A {Homo sapiens} PDB: 3dj3_A
Probab=99.26 E-value=5.1e-11 Score=93.85 Aligned_cols=83 Identities=33% Similarity=0.496 Sum_probs=65.4
Q ss_pred EEEEEeeCC--CCcceeEEEeccCC-------------CCCeEEEEeCCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHH
Q psy10428 10 RLCHILKWT--DFDGYGFNLHGEKG-------------KTGQYIGKVDEGSPAEAAGLKEGDHIIEVNSVNICNENHNQV 74 (309)
Q Consensus 10 R~v~L~K~~--~~~G~GFsl~ggk~-------------~~Gi~V~~V~pgSpA~~AGLq~GD~Il~VNG~~V~~~sh~dv 74 (309)
+.+.+.+.. ...+|||++.++.. ..|++|..|.++|||+++||++||+|++|||.++.+.+|+++
T Consensus 6 ~~i~~~~~~~~~~~~lG~~i~g~~~~~~~~~~~~~~~~~~gv~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~ 85 (104)
T 3sfj_A 6 QRVEIHKLRQGENLILGFSIGGGIDQDPSQNPFSEDKTDKGIYVTRVSEGGPAEIAGLQIGDKIMQVNGWDMTMVTHDQA 85 (104)
T ss_dssp EEEEEECEEETTEEECSEEEEECTTSCGGGCSSCSSTTCCSEEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHHH
T ss_pred EEEEEEEccCCCCCcccEEEECccccCccccccccCCCCCCEEEEEECCCChHHHcCCCCCCEEEEECCEECCCCCHHHH
Confidence 345554432 12369999996543 357999999999999999999999999999999998999999
Q ss_pred HHHHHhCCCCeEEEEEEe
Q psy10428 75 VQRIKAVPDETKLLVVDV 92 (309)
Q Consensus 75 v~~Lk~s~~~vvllvv~r 92 (309)
...++...+..+.+.+.|
T Consensus 86 ~~~l~~~~g~~v~l~v~R 103 (104)
T 3sfj_A 86 RKRLTKRSEEVVRLLVTR 103 (104)
T ss_dssp HHHHTCTTCSEEEEEEEE
T ss_pred HHHHHhCCCCEEEEEEEc
Confidence 999987665555565554
No 124
>1uez_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.25 E-value=1.5e-11 Score=96.62 Aligned_cols=90 Identities=30% Similarity=0.510 Sum_probs=70.9
Q ss_pred CCCCCceEEEEEeeCCCCcceeEEEeccCC-CCCeEEEEeCCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHhC
Q psy10428 3 EDKTPVVRLCHILKWTDFDGYGFNLHGEKG-KTGQYIGKVDEGSPAEAAGLKEGDHIIEVNSVNICNENHNQVVQRIKAV 81 (309)
Q Consensus 3 e~~~~~pR~v~L~K~~~~~G~GFsl~ggk~-~~Gi~V~~V~pgSpA~~AGLq~GD~Il~VNG~~V~~~sh~dvv~~Lk~s 81 (309)
.....++|.|.|.+...+.+|||.+.+... ..+++|..|.+++||+++||++||+|++|||.++....+.+++..++..
T Consensus 3 ~~~~~~~~~v~l~~~~~~~~lG~~~~~~~~~~~g~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~~~~~ 82 (101)
T 1uez_A 3 SGSSGEVRLVSLRRAKAHEGLGFSIRGGSEHGVGIYVSLVEPGSLAEKEGLRVGDQILRVNDKSLARVTHAEAVKALKGS 82 (101)
T ss_dssp CCCSCCCEEECCCCCCTTTCSSEEEEECTTTTCCEEEEEECTTSHHHHHTCCSSCCEEEETTEECSSCCHHHHHHHSSSS
T ss_pred CCCCCccEEEEEEECCCCCcccEEEeCCCCCCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCcCHHHHHHhhcCC
Confidence 455678899999986556899999987743 3589999999999999999999999999999999888887666665443
Q ss_pred CCCeEEEEEEeCC
Q psy10428 82 PDETKLLVVDVAS 94 (309)
Q Consensus 82 ~~~vvllvv~r~~ 94 (309)
..+ .+.+.|.+
T Consensus 83 -~~v-~l~v~R~g 93 (101)
T 1uez_A 83 -KKL-VLSVYSAG 93 (101)
T ss_dssp -SSC-CEEECCCC
T ss_pred -CeE-EEEEEECC
Confidence 333 34555543
No 125
>3kzd_A TIAM-1, T-lymphoma invasion and metastasis-inducing prote; PDZ, cell junction, cell adhesion, signaling protein, nucleotide exchange factor; 1.30A {Homo sapiens} PDB: 3kze_A
Probab=99.25 E-value=5.7e-11 Score=94.03 Aligned_cols=75 Identities=31% Similarity=0.402 Sum_probs=62.3
Q ss_pred CceEEEEEeeCCC-CcceeEEEeccC--CCCCeEEEEeCCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHhC
Q psy10428 7 PVVRLCHILKWTD-FDGYGFNLHGEK--GKTGQYIGKVDEGSPAEAAGLKEGDHIIEVNSVNICNENHNQVVQRIKAV 81 (309)
Q Consensus 7 ~~pR~v~L~K~~~-~~G~GFsl~ggk--~~~Gi~V~~V~pgSpA~~AGLq~GD~Il~VNG~~V~~~sh~dvv~~Lk~s 81 (309)
..+|.|+|.|.+. ..+|||++.... +..+++|..|.++|||+++||+.||+|++|||.++.+.+|.++..++++.
T Consensus 5 ~~~~~v~i~k~~~~~~~~Gf~v~~~~~~~~~g~~V~~V~~~spA~~aGL~~GD~Il~vng~~v~~~~~~~l~~~l~~~ 82 (94)
T 3kzd_A 5 KVTHSIHIEKSDTAADTYGFSLSSVEEDGIRRLYVNSVKETGLASKKGLKAGDEILEINNRAADALNSSMLKDFLSQP 82 (94)
T ss_dssp CEEEEEEEEC------CCSEEEEEECSSSSCEEEEEEECTTSHHHHTTCCTTCEEEEETTEEGGGCCHHHHHHHHHSS
T ss_pred cceeEEEEEeCCCCcCCcCEEEEecCCCCcCCeEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHhCC
Confidence 4689999999862 248999998743 23589999999999999999999999999999999999999999999743
No 126
>2edz_A PDZ domain-containing protein 1; CFTR-associated protein of 70 kDa, Na/PI cotransporter C- terminal-associated protein, NAPI-CAP1; NMR {Mus musculus}
Probab=99.25 E-value=2.6e-11 Score=97.53 Aligned_cols=85 Identities=36% Similarity=0.548 Sum_probs=72.7
Q ss_pred ceEEEEEeeCCCCcceeEEEeccCCCCCeEEEEeCCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCCeEE
Q psy10428 8 VVRLCHILKWTDFDGYGFNLHGEKGKTGQYIGKVDEGSPAEAAGLKEGDHIIEVNSVNICNENHNQVVQRIKAVPDETKL 87 (309)
Q Consensus 8 ~pR~v~L~K~~~~~G~GFsl~ggk~~~Gi~V~~V~pgSpA~~AGLq~GD~Il~VNG~~V~~~sh~dvv~~Lk~s~~~vvl 87 (309)
.|+++.|.+.. ..+|||.+.......|++|..|.++|||+++||++||+|++|||.++.+.+|.++..+++.. +..+.
T Consensus 13 dp~~~~l~~~~-~~~~G~~l~~~~~~~g~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~l~~~-g~~v~ 90 (114)
T 2edz_A 13 NPRECKLSKQE-GQNYGFFLRIEKDTDGHLIRVIEEGSPAEKAGLLDGDRVLRINGVFVDKEEHAQVVELVRKS-GNSVT 90 (114)
T ss_dssp CCEEEEEECCT-TCCCSCEEECCTTCCSCEEECCCTTCTTGGGTCCTTCEEEEESSSBCSSSCHHHHHHHHHHT-CSEEE
T ss_pred CCEEEEEeCCC-CCcccEEEEEecCCCCeEEEEeCCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHcC-CCEEE
Confidence 68999998873 47899999877666799999999999999999999999999999999888899999999886 44555
Q ss_pred EEEEeCC
Q psy10428 88 LVVDVAS 94 (309)
Q Consensus 88 lvv~r~~ 94 (309)
+.+.|.+
T Consensus 91 l~v~R~~ 97 (114)
T 2edz_A 91 LLVLDGD 97 (114)
T ss_dssp EEEECHH
T ss_pred EEEEECC
Confidence 6666643
No 127
>1uju_A Scribble; PDZ domain, cellular signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.24 E-value=5.6e-12 Score=100.91 Aligned_cols=86 Identities=27% Similarity=0.366 Sum_probs=71.3
Q ss_pred CCceEEEEEeeCCCCcceeEEEeccCC----------CCCeEEEEeCCCCHHHHcC-CCCCCEEEEECCEEcCCCCHHHH
Q psy10428 6 TPVVRLCHILKWTDFDGYGFNLHGEKG----------KTGQYIGKVDEGSPAEAAG-LKEGDHIIEVNSVNICNENHNQV 74 (309)
Q Consensus 6 ~~~pR~v~L~K~~~~~G~GFsl~ggk~----------~~Gi~V~~V~pgSpA~~AG-Lq~GD~Il~VNG~~V~~~sh~dv 74 (309)
.+..|.|.|.|.+ ..+|||.+.++.. ..+++|..|.++|||+++| |++||+|++|||+++.+.+|.++
T Consensus 7 ~~~~~~v~l~k~~-~~~lG~~i~gg~~~~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~~~~ 85 (111)
T 1uju_A 7 GPGLRELCIQKAP-GERLGISIRGGARGHAGNPRDPTDEGIFISKVSPTGAAGRDGRLRVGLRLLEVNQQSLLGLTHGEA 85 (111)
T ss_dssp SCSSSCEEEECCT-TCCCCEEEECCSSSSCSCSSCTTCCCCEEEEECTTSHHHHHSSCCTTCBCCBBSSCBCTTSCHHHH
T ss_pred CCccEEEEEEECC-CCccCEEEECCccccccccccCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHH
Confidence 4567889999874 4799999998753 3579999999999999999 99999999999999988899999
Q ss_pred HHHHHhCCCCeEEEEEEeC
Q psy10428 75 VQRIKAVPDETKLLVVDVA 93 (309)
Q Consensus 75 v~~Lk~s~~~vvllvv~r~ 93 (309)
+.+++..+ ..+.+.+.|.
T Consensus 86 ~~~l~~~g-~~v~l~v~r~ 103 (111)
T 1uju_A 86 VQLLRSVG-DTLTVLVCDG 103 (111)
T ss_dssp HHHHSSCS-SEEEECCCCC
T ss_pred HHHHHcCC-CeEEEEEEEC
Confidence 99998764 4444555543
No 128
>1ujv_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics, KIAA0705 protein; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.24 E-value=8.2e-11 Score=92.27 Aligned_cols=87 Identities=29% Similarity=0.455 Sum_probs=71.8
Q ss_pred CCCCCceEEEEEeeCCCCcceeEEEeccCCCCCeEEEEeCCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCC
Q psy10428 3 EDKTPVVRLCHILKWTDFDGYGFNLHGEKGKTGQYIGKVDEGSPAEAAGLKEGDHIIEVNSVNICNENHNQVVQRIKAVP 82 (309)
Q Consensus 3 e~~~~~pR~v~L~K~~~~~G~GFsl~ggk~~~Gi~V~~V~pgSpA~~AGLq~GD~Il~VNG~~V~~~sh~dvv~~Lk~s~ 82 (309)
.....+.+.+.|.|.. .||||.|.... .|++|..|.++ |+++||++||+|++|||.++.+.+|.+++.+|+...
T Consensus 5 ~~~~~~~~~v~l~~~~--~g~G~~i~~~~--~Gv~V~~v~~~--a~~aGL~~GD~I~~vng~~v~~~~~~~~~~~l~~~~ 78 (96)
T 1ujv_A 5 SSGQAELMTLTIVKGA--QGFGFTIADSP--TGQRVKQILDI--QGCPGLCEGDLIVEINQQNVQNLSHTEVVDILKDCP 78 (96)
T ss_dssp CCCCCCCEEEEEECCS--SSSSEEEEEET--TEEEEEEESCG--GGSTTCCSSCEEEEETTEECSSCCHHHHHHHHHHSC
T ss_pred CCCCceEEEEEEEeCC--CceeEEEEcCC--CCEEEEEEecc--cccCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC
Confidence 3445677889999976 89999997542 37999999984 788999999999999999999999999999999874
Q ss_pred -CCeEEEEEEeCCe
Q psy10428 83 -DETKLLVVDVASE 95 (309)
Q Consensus 83 -~~vvllvv~r~~~ 95 (309)
+..+.+.+.|.+.
T Consensus 79 ~g~~v~l~v~R~g~ 92 (96)
T 1ujv_A 79 IGSETSLIIHRGSG 92 (96)
T ss_dssp TTSEEEEEEECCSS
T ss_pred CCCEEEEEEEECCC
Confidence 6666677777543
No 129
>2iwn_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, HOST-virus interaction, structural genomics consortium, synaptosome, tight junction; 1.35A {Homo sapiens}
Probab=99.23 E-value=7.4e-11 Score=91.19 Aligned_cols=82 Identities=24% Similarity=0.393 Sum_probs=66.8
Q ss_pred eEEEEEeeCCCCcceeEEEeccCC-----CCCeEEEEeCCCCHHHHcC-CCCCCEEEEECCEEcCCCCHHHHHHHHHhCC
Q psy10428 9 VRLCHILKWTDFDGYGFNLHGEKG-----KTGQYIGKVDEGSPAEAAG-LKEGDHIIEVNSVNICNENHNQVVQRIKAVP 82 (309)
Q Consensus 9 pR~v~L~K~~~~~G~GFsl~ggk~-----~~Gi~V~~V~pgSpA~~AG-Lq~GD~Il~VNG~~V~~~sh~dvv~~Lk~s~ 82 (309)
...+.|.+.. .+|||.+.+... ..+++|..|.++|||+++| |++||+|++|||.++.+.++.++..+++..+
T Consensus 5 ~~~v~l~~~~--~~lG~~i~~~~~~~~~~~~~~~V~~v~~~s~A~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~~~ 82 (97)
T 2iwn_A 5 TFDVELTKNV--QGLGITIAGYIGDKKLEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTG 82 (97)
T ss_dssp EEEEEEECBT--TBSCEEEECCCCC----CCCCEEEEECTTCHHHHHCCCCTTCEEEEETTEECTTSCHHHHHHHHHTCC
T ss_pred EEEEEEecCC--CCCcEEEEccCCCCCCCCCCEEEEEeCCCChHHhCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC
Confidence 4556777654 899999988732 4689999999999999999 9999999999999998889999998888754
Q ss_pred CCeEEEEEEeC
Q psy10428 83 DETKLLVVDVA 93 (309)
Q Consensus 83 ~~vvllvv~r~ 93 (309)
..+.+.+.|.
T Consensus 83 -~~v~l~v~r~ 92 (97)
T 2iwn_A 83 -QTVLLTLMRR 92 (97)
T ss_dssp -SEEEEEEEEE
T ss_pred -CeEEEEEEeC
Confidence 4444555553
No 130
>1wf7_A Enigma homologue protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1
Probab=99.23 E-value=3.8e-11 Score=94.81 Aligned_cols=87 Identities=20% Similarity=0.307 Sum_probs=70.7
Q ss_pred CCCceEEEEEeeCCCCcceeEEEeccCCC-CCeEEEEeCCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCC
Q psy10428 5 KTPVVRLCHILKWTDFDGYGFNLHGEKGK-TGQYIGKVDEGSPAEAAGLKEGDHIIEVNSVNICNENHNQVVQRIKAVPD 83 (309)
Q Consensus 5 ~~~~pR~v~L~K~~~~~G~GFsl~ggk~~-~Gi~V~~V~pgSpA~~AGLq~GD~Il~VNG~~V~~~sh~dvv~~Lk~s~~ 83 (309)
+.++...+.|. ++ .+|||.+.++... .+++|..|.++|||+++||++||+|++|||.++.+.++.++..+++..+.
T Consensus 2 ~~g~~~~v~l~-~~--~~~G~~l~gg~~~~~~v~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~~~~~g~ 78 (103)
T 1wf7_A 2 SSGSSGSVSLV-GP--APWGFRLQGGKDFNMPLTISSLKDGGKASQAHVRIGDVVLSIDGISAQGMTHLEAQNKIKACTG 78 (103)
T ss_dssp CCCCCEEEEEE-SS--SCCSCCEEEETTTTEEEEECCCCTTCHHHHTTCCTTCBEEEETTEECSSCCHHHHHHHHHHCSS
T ss_pred CCCCEEEEEEe-CC--CccCEEEeccccCCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCC
Confidence 35677788887 43 7899999987643 46899999999999999999999999999999988888999988888744
Q ss_pred CeEEEEEEeCCe
Q psy10428 84 ETKLLVVDVASE 95 (309)
Q Consensus 84 ~vvllvv~r~~~ 95 (309)
.+.+.+.|.+.
T Consensus 79 -~v~l~v~R~g~ 89 (103)
T 1wf7_A 79 -SLNMTLQRASA 89 (103)
T ss_dssp -EEEEEECCCSC
T ss_pred -eEEEEEEeCCC
Confidence 44556666543
No 131
>3r0h_A INAD, inactivation-NO-after-potential D protein; protein-protein complex, PDZ domain, peptide binding protein; 2.60A {Drosophila melanogaster}
Probab=99.23 E-value=1.5e-10 Score=101.20 Aligned_cols=98 Identities=22% Similarity=0.159 Sum_probs=78.8
Q ss_pred CCceEEEEEeeCCCCcceeEEEeccCCC---CCeEEEEeCCCCHHHHcC-CCCCCEEEEECCEEcCC--CCHHHHHHHHH
Q psy10428 6 TPVVRLCHILKWTDFDGYGFNLHGEKGK---TGQYIGKVDEGSPAEAAG-LKEGDHIIEVNSVNICN--ENHNQVVQRIK 79 (309)
Q Consensus 6 ~~~pR~v~L~K~~~~~G~GFsl~ggk~~---~Gi~V~~V~pgSpA~~AG-Lq~GD~Il~VNG~~V~~--~sh~dvv~~Lk 79 (309)
.+....+.|.+.. .+|||+|.++.+. .|++|..|.++|||+++| |+.||+|++|||+++.+ .+|.+++.+++
T Consensus 16 ~~~~~~v~~~~~~--~~lG~~i~~g~~~~~~~g~~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~~~~~~~~~~~ 93 (206)
T 3r0h_A 16 PNKKILIELKVEK--KPMGVIVCGGKNNHVTTGCVITHVYPEGQVAADKRLKIFDHICDINGTPIHVGSMTTLKVHQLFH 93 (206)
T ss_dssp TTSCEEEEEECTT--SCCCEEEECCSSSSCCSCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECCGGGSCHHHHHHHHH
T ss_pred CCCEEEEEEEeCC--CCcCEEEecccCCCCCCCeEEEEECCCChHHhcCCCCCCCEEEEECCEEcCCCccCHHHHHHHHH
Confidence 4567889999876 9999999987643 479999999999999999 99999999999999988 88999999999
Q ss_pred hCCCCeEEEEEEeCCeeeeEeeeeec
Q psy10428 80 AVPDETKLLVVDVASEEYFKSNNITI 105 (309)
Q Consensus 80 ~s~~~vvllvv~r~~~~~~~~~~~~i 105 (309)
..+...+.+.+.|.+........+.+
T Consensus 94 ~~~~~~v~l~v~R~~~~~~~~~~v~l 119 (206)
T 3r0h_A 94 TTYEKAVTLTVFRADPPELEKFNVDL 119 (206)
T ss_dssp SCCSSEEEEEEECCSSCCEEEEEEEE
T ss_pred hcCCCceEEEEEecccCCCcEEEEEE
Confidence 88777345566666554444344443
No 132
>1y7n_A Amyloid beta A4 precursor protein-binding family A member 1; copper chaperone for superoxide dismutase, neuronal adaptor, protein transport; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.22 E-value=9.5e-11 Score=91.22 Aligned_cols=77 Identities=23% Similarity=0.315 Sum_probs=61.8
Q ss_pred ceEEEEEeeCCCCcceeEEEeccCCCCCeEEEEeCCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCCeEE
Q psy10428 8 VVRLCHILKWTDFDGYGFNLHGEKGKTGQYIGKVDEGSPAEAAGLKEGDHIIEVNSVNICNENHNQVVQRIKAVPDETKL 87 (309)
Q Consensus 8 ~pR~v~L~K~~~~~G~GFsl~ggk~~~Gi~V~~V~pgSpA~~AGLq~GD~Il~VNG~~V~~~sh~dvv~~Lk~s~~~vvl 87 (309)
..+.+.+.+.....+|||.+.+ | +|..|.++|||+++||++||+|++|||.++.+.+|.++..+|+..+..+ .
T Consensus 11 ~~~~~~i~~~~~~~~lG~~~~~-----G-~V~~V~~~spA~~aGL~~GD~Il~Ing~~v~~~~~~~~~~~l~~~g~~v-~ 83 (90)
T 1y7n_A 11 NVTTVLIRRPDLRYQLGFSVQN-----G-IICSLMRGGIAERGGVRVGHRIIEINGQSVVATPHEKIVHILSNAVGEI-H 83 (90)
T ss_dssp SCEEEEEEESSTTSCCCEEEET-----T-EEEEECTTSHHHHHTCCSSCEEEEETTEECTTSCHHHHHHHHHHCCEEE-E
T ss_pred CcceEEEEeCCCccccCeEecC-----C-EEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeE-E
Confidence 3455555555455889999854 3 8999999999999999999999999999998889999999998775444 3
Q ss_pred EEEE
Q psy10428 88 LVVD 91 (309)
Q Consensus 88 lvv~ 91 (309)
+.+.
T Consensus 84 l~v~ 87 (90)
T 1y7n_A 84 MKTM 87 (90)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 4443
No 133
>3gsl_A Disks large homolog 4; PDZ domain, tandem, PSD-95, DLG4, SAP-90, GLUR6, cell juncti membrane, lipoprotein, membrane, palmitate, phosphoprotein; 2.05A {Rattus norvegicus} PDB: 3zrt_A 2ka9_A
Probab=99.22 E-value=9.6e-11 Score=100.89 Aligned_cols=84 Identities=24% Similarity=0.349 Sum_probs=71.4
Q ss_pred CceEEEEEeeCCCCcceeEEEeccCC------CCCeEEEEeCCCCHHHHcC-CCCCCEEEEECCEEcCCCCHHHHHHHHH
Q psy10428 7 PVVRLCHILKWTDFDGYGFNLHGEKG------KTGQYIGKVDEGSPAEAAG-LKEGDHIIEVNSVNICNENHNQVVQRIK 79 (309)
Q Consensus 7 ~~pR~v~L~K~~~~~G~GFsl~ggk~------~~Gi~V~~V~pgSpA~~AG-Lq~GD~Il~VNG~~V~~~sh~dvv~~Lk 79 (309)
.+.+.+.|.|.. .+|||.+.++.. ..|++|..|.++|||+++| |+.||+|++|||.++.+.++.++..+++
T Consensus 4 ~~~~~v~l~~~~--~~lG~~i~~g~~~~~~~~~~g~~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~ 81 (196)
T 3gsl_A 4 MEYEEITLERGN--SGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALK 81 (196)
T ss_dssp EEEEEEEEECBT--TBSSEEEECCTTSCTTSSCCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHH
T ss_pred cEEEEEEEEECC--CCCCEEEEcccCCcccCCCCCEEEEEECCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence 356889999986 899999998864 3589999999999999999 9999999999999999999999998888
Q ss_pred hCCCCeEEEEEEeC
Q psy10428 80 AVPDETKLLVVDVA 93 (309)
Q Consensus 80 ~s~~~vvllvv~r~ 93 (309)
..+..+.+ .+.|.
T Consensus 82 ~~g~~v~l-~v~r~ 94 (196)
T 3gsl_A 82 EAGSIVRL-YVMRR 94 (196)
T ss_dssp TSCSEEEE-EEEEE
T ss_pred hCCCcEEE-EEEec
Confidence 87655544 44443
No 134
>3tsv_A Tight junction protein ZO-1; PDZ, scaffolding, JAM, cell adhesion; 1.99A {Homo sapiens} PDB: 3shu_A
Probab=99.22 E-value=8.6e-11 Score=96.58 Aligned_cols=85 Identities=29% Similarity=0.463 Sum_probs=68.7
Q ss_pred CceEEEEEeeCCCCcceeEEEeccCCCCCeEEEEeCCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHh-CCCCe
Q psy10428 7 PVVRLCHILKWTDFDGYGFNLHGEKGKTGQYIGKVDEGSPAEAAGLKEGDHIIEVNSVNICNENHNQVVQRIKA-VPDET 85 (309)
Q Consensus 7 ~~pR~v~L~K~~~~~G~GFsl~ggk~~~Gi~V~~V~pgSpA~~AGLq~GD~Il~VNG~~V~~~sh~dvv~~Lk~-s~~~v 85 (309)
+.++++.+.+. .+|||.+.++.. .|++|..|.++|||+++||++||+|++|||.+|.+.++.++..+|.. ..+..
T Consensus 28 p~~~~~~~~~~---~~lG~~l~~~~~-~gv~V~~V~~gspA~~aGL~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~g~~ 103 (124)
T 3tsv_A 28 PSMKLVKFRKG---DSVGLRLAGGND-VGIFVAGVLEDSPAAKEGLEEGDQILRVNNVDFTNIIREEAVLFLLDLPKGEE 103 (124)
T ss_dssp CCCEEEEEECS---SCCCEEEEECTT-SCEEEEEECTTCHHHHTTCCTTEEEEEETTEECSSCCHHHHHHHHHHSCTTCE
T ss_pred CCeEEEEcCCC---CceeEEEecCCC-CCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhcCCCCE
Confidence 45566655554 689999987644 58999999999999999999999999999999988888999998876 34555
Q ss_pred EEEEEEeCCe
Q psy10428 86 KLLVVDVASE 95 (309)
Q Consensus 86 vllvv~r~~~ 95 (309)
+.+.+.|...
T Consensus 104 v~l~v~R~~~ 113 (124)
T 3tsv_A 104 VTILAQKKKD 113 (124)
T ss_dssp EEEEEEECHH
T ss_pred EEEEEEECCc
Confidence 5667777544
No 135
>1whd_A RGS3, regulator of G-protein signaling 3; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: b.36.1.1
Probab=99.21 E-value=3e-11 Score=95.12 Aligned_cols=82 Identities=26% Similarity=0.402 Sum_probs=69.1
Q ss_pred CCceEEEEEeeCCCCcceeEEEeccCCCCCeEEEEeCCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCCe
Q psy10428 6 TPVVRLCHILKWTDFDGYGFNLHGEKGKTGQYIGKVDEGSPAEAAGLKEGDHIIEVNSVNICNENHNQVVQRIKAVPDET 85 (309)
Q Consensus 6 ~~~pR~v~L~K~~~~~G~GFsl~ggk~~~Gi~V~~V~pgSpA~~AGLq~GD~Il~VNG~~V~~~sh~dvv~~Lk~s~~~v 85 (309)
+...+.+.|.+.. .+|||.+.+. .+++|..|.+++||+++||++||+|++|||.++.+.++.++..+++..++.
T Consensus 13 ~~~~~~v~l~~~~--~g~G~~~~~~---~~~~V~~V~~~spA~~aGL~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~~- 86 (100)
T 1whd_A 13 NGEKLQITIRRGK--DGFGFTICCD---SPVRVQAVDSGGPAERAGLQQLDTVLQLNERPVEHWKCVELAHEIRSCPSE- 86 (100)
T ss_dssp CCEEEEEEEECCS--SSSSCBCCCS---SSCBCCBCCTTSHHHHHTCCSSCEEEEETTEECTTCCHHHHHHHHHHCSSE-
T ss_pred ccceEEEEEECCC--CeeeEEEeCC---CCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCe-
Confidence 4466778888875 8999988765 479999999999999999999999999999999888999999999887655
Q ss_pred EEEEEEeC
Q psy10428 86 KLLVVDVA 93 (309)
Q Consensus 86 vllvv~r~ 93 (309)
+.+.+.|.
T Consensus 87 v~l~v~R~ 94 (100)
T 1whd_A 87 IILLVWRV 94 (100)
T ss_dssp EEEEEEEC
T ss_pred EEEEEEEC
Confidence 44555554
No 136
>2qkv_A Inactivation-NO-after-potential D protein; PDZ domain, scaffolding protein, membrane, sensory transduction, vision; 1.55A {Drosophila melanogaster} PDB: 2qkt_A 2qku_A
Probab=99.21 E-value=1.2e-10 Score=91.02 Aligned_cols=81 Identities=17% Similarity=0.147 Sum_probs=66.7
Q ss_pred ceEEEEEeeCCCCcceeEEEeccCCCCCeEEEEeCCCCHHHHcC-CCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCCeE
Q psy10428 8 VVRLCHILKWTDFDGYGFNLHGEKGKTGQYIGKVDEGSPAEAAG-LKEGDHIIEVNSVNICNENHNQVVQRIKAVPDETK 86 (309)
Q Consensus 8 ~pR~v~L~K~~~~~G~GFsl~ggk~~~Gi~V~~V~pgSpA~~AG-Lq~GD~Il~VNG~~V~~~sh~dvv~~Lk~s~~~vv 86 (309)
....+.|.+.. +.+|||.+.+. ..|++|..|.++|||+++| |++||+|++|||.++.+.++.++..+++..++.+
T Consensus 8 ~~~~v~l~~~~-~~glG~~~~~~--~~gv~V~~V~~~spA~~aG~L~~GD~I~~Ing~~v~~~~~~~~~~~~~~~~~~v- 83 (96)
T 2qkv_A 8 EKFNVDLMKKA-GKELGLSLSPN--EIGCTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGLPFQVSYALFKGANGKV- 83 (96)
T ss_dssp CCEEEEEECBT-TBCCCEEEEEC--SSSEEEEEECTTSCHHHHHHCCTTCEEEEETTEECTTCCHHHHHHHHHTCSSEE-
T ss_pred ceEEEEEEeCC-CCCccEEEEeC--CCcEEEEEeCCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHhcCCCcE-
Confidence 44667887653 47999998773 3589999999999999999 9999999999999999889999998888876654
Q ss_pred EEEEEe
Q psy10428 87 LLVVDV 92 (309)
Q Consensus 87 llvv~r 92 (309)
.+.+.|
T Consensus 84 ~l~v~R 89 (96)
T 2qkv_A 84 SMEVTR 89 (96)
T ss_dssp EEEEEC
T ss_pred EEEEEe
Confidence 455554
No 137
>3k1r_A Harmonin; protein-protein complex, alternative splicing, coiled coil, deafness, hearing, non-syndromic deafness, polymorphism; 2.30A {Homo sapiens} PDB: 2kbq_A 2kbr_A 2lsr_A
Probab=99.21 E-value=5.8e-11 Score=104.09 Aligned_cols=87 Identities=22% Similarity=0.420 Sum_probs=73.0
Q ss_pred CCceEEEEEeeCCCCcceeEEEeccCC-CCCeEEEEeCCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCC
Q psy10428 6 TPVVRLCHILKWTDFDGYGFNLHGEKG-KTGQYIGKVDEGSPAEAAGLKEGDHIIEVNSVNICNENHNQVVQRIKAVPDE 84 (309)
Q Consensus 6 ~~~pR~v~L~K~~~~~G~GFsl~ggk~-~~Gi~V~~V~pgSpA~~AGLq~GD~Il~VNG~~V~~~sh~dvv~~Lk~s~~~ 84 (309)
...++.|.|.|.+ ..+|||.+.++.. ..+++|..|.+||||+++||++||+|++|||.+|.+.+|.+++.+++. +.
T Consensus 82 ~~~~~~v~l~k~~-~~~lG~~i~~~~~~~~~~~V~~V~~gspA~~aGL~~GD~Il~vng~~v~~~~~~~~~~~l~~--~~ 158 (192)
T 3k1r_A 82 SRKLKEVRLDRLH-PEGLGLSVRGGLEFGCGLFISHLIKGGQADSVGLQVGDEIVRINGYSISSCTHEEVINLIRT--EK 158 (192)
T ss_dssp CSSCEEEEEETTS-TTCCCEEEEEEGGGTEEEEEEEECTTSHHHHTTCCTTEEEEEETTEECTTCCHHHHHHHHTS--SS
T ss_pred CCceEEEEEEeCC-CCceeEEEEcccccCCCEEEEEECCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHcC--CC
Confidence 4567899999984 3799999987643 358999999999999999999999999999999988889999999987 44
Q ss_pred eEEEEEEeCCe
Q psy10428 85 TKLLVVDVASE 95 (309)
Q Consensus 85 vvllvv~r~~~ 95 (309)
.+.+.+.|.+.
T Consensus 159 ~v~l~v~r~g~ 169 (192)
T 3k1r_A 159 TVSIKVRHIGL 169 (192)
T ss_dssp EEEEEEEECCE
T ss_pred eEEEEEEECCc
Confidence 55566676654
No 138
>1vb7_A PDZ and LIM domain 2; PDZ domain PDZ-LIM protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1
Probab=99.21 E-value=3.5e-11 Score=93.51 Aligned_cols=73 Identities=30% Similarity=0.427 Sum_probs=62.9
Q ss_pred cceeEEEeccCC-CCCeEEEEeCCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCCeEEEEEEeCC
Q psy10428 21 DGYGFNLHGEKG-KTGQYIGKVDEGSPAEAAGLKEGDHIIEVNSVNICNENHNQVVQRIKAVPDETKLLVVDVAS 94 (309)
Q Consensus 21 ~G~GFsl~ggk~-~~Gi~V~~V~pgSpA~~AGLq~GD~Il~VNG~~V~~~sh~dvv~~Lk~s~~~vvllvv~r~~ 94 (309)
.+|||.+.++.. ..+++|..|.++|||+++||++||+|++|||.++...+|.++..+++... ..+.+.+.|++
T Consensus 16 ~~lG~~l~~g~~~~~g~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~l~~~~-~~v~l~v~R~g 89 (94)
T 1vb7_A 16 APWGFRISGGRDFHTPIIVTKVTERGKAEAADLRPGDIIVAINGQSAENMLHAEAQSKIRQSA-SPLRLQLDRSS 89 (94)
T ss_dssp SCCSBCCEEETTTTEEEECCCBCTTSSHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHHTCC-SSEEEEEECCC
T ss_pred CCccEEEecccCCCCCeEEEEECCCCHHHHCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC-CcEEEEEEECC
Confidence 799999987653 34789999999999999999999999999999998888999999998876 44556666654
No 139
>1wg6_A Hypothetical protein (riken cDNA 2810455B10); structural genomics, PDZ domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.36.1.1 PDB: 2koh_A 2k1z_A 2k20_A
Probab=99.20 E-value=2.8e-11 Score=99.76 Aligned_cols=82 Identities=22% Similarity=0.336 Sum_probs=65.5
Q ss_pred EEEeeCCCCcceeEEEeccCC-----CCCeEEEEeCCCCHHHHcC-CCCCCEEEEECCEEcCCCCHHHHHHHHHhC----
Q psy10428 12 CHILKWTDFDGYGFNLHGEKG-----KTGQYIGKVDEGSPAEAAG-LKEGDHIIEVNSVNICNENHNQVVQRIKAV---- 81 (309)
Q Consensus 12 v~L~K~~~~~G~GFsl~ggk~-----~~Gi~V~~V~pgSpA~~AG-Lq~GD~Il~VNG~~V~~~sh~dvv~~Lk~s---- 81 (309)
+.|.|. .+.+|||.|.++.. ..+++|..|.++|||+++| |++||+|++|||+++.+.+|.+++.+|+.+
T Consensus 29 v~l~k~-~~~glG~~i~~~~~~~~~~~~gi~V~~V~~gspA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~~~ 107 (127)
T 1wg6_A 29 IPLNDS-GSAGLGVSLKGNKSRETGTDLGIFIKSIIHGGAAFKDGRLRMNDQLIAVNGETLLGKSNHEAMETLRRSMSME 107 (127)
T ss_dssp EECSSS-TTTCCCCEEEEEEETTTTEEEEEEEEECCSSSSTHHHHTSCSCCBEEEETTEESTTSCHHHHHHHHHHHHHHH
T ss_pred EEEeeC-CCCccCeEEecccCCCCCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHHhhccc
Confidence 444433 35899999988753 2489999999999999999 999999999999999999999999999876
Q ss_pred --CCCeEEEEEEeCC
Q psy10428 82 --PDETKLLVVDVAS 94 (309)
Q Consensus 82 --~~~vvllvv~r~~ 94 (309)
.+..+.+++.|..
T Consensus 108 g~~~~~v~l~v~R~~ 122 (127)
T 1wg6_A 108 GNIRGMIQLVILRRS 122 (127)
T ss_dssp HHHTCEEEEEEEECS
T ss_pred cCCCCEEEEEEEeCC
Confidence 1344455555543
No 140
>2yt7_A Amyloid beta A4 precursor protein-binding family A member 3; neuron-specific X11L2 protein, neuronal MUNC18-1-interacting protein 3, MINT-3; NMR {Homo sapiens}
Probab=99.20 E-value=1.3e-10 Score=91.56 Aligned_cols=86 Identities=19% Similarity=0.224 Sum_probs=68.7
Q ss_pred CCceEEEEEeeCCCCcceeEEEeccCC---CCCeEEEEeCCCCHHHH-cCCCCCCEEEEECCEEcCCCCHHHHHHHHHhC
Q psy10428 6 TPVVRLCHILKWTDFDGYGFNLHGEKG---KTGQYIGKVDEGSPAEA-AGLKEGDHIIEVNSVNICNENHNQVVQRIKAV 81 (309)
Q Consensus 6 ~~~pR~v~L~K~~~~~G~GFsl~ggk~---~~Gi~V~~V~pgSpA~~-AGLq~GD~Il~VNG~~V~~~sh~dvv~~Lk~s 81 (309)
....|.+.|.|.. ..+|||.+..... ..+++|..|.+++||++ +||++||+|++|||.++.+.+|.++..+|+..
T Consensus 7 ~~~~~~v~l~k~~-g~~lG~~i~~~~~~~~~~~~~V~~V~~~spA~~~ggl~~GD~I~~Ing~~v~~~~~~~~~~~l~~~ 85 (101)
T 2yt7_A 7 GDNCREVHLEKRR-GEGLGVALVESGWGSLLPTAVIANLLHGGPAERSGALSIGDRLTAINGTSLVGLPLAACQAAVRET 85 (101)
T ss_dssp TCCCEEEEEECCT-TCCCCEEEEECCCSSSSCCEEEEEECTTSTTGGGSSCCTTCEEEEESSCBCTTSCHHHHHHHHHHT
T ss_pred CCceEEEEEEeCC-CCccCEEEEeCCCCCCccCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Confidence 4567889998864 2689999975321 23699999999999999 55999999999999999999999999999884
Q ss_pred -CCCeEEEEEEe
Q psy10428 82 -PDETKLLVVDV 92 (309)
Q Consensus 82 -~~~vvllvv~r 92 (309)
.+..+.+.+.|
T Consensus 86 ~~g~~v~l~v~R 97 (101)
T 2yt7_A 86 KSQTSVTLSIVH 97 (101)
T ss_dssp TTSSEEEEEECC
T ss_pred CCCCeEEEEEEe
Confidence 34444555544
No 141
>2lob_A Golgi-associated PDZ and coiled-coil motif-contai protein; structural protein-hydrolase complex, peptide binding protei; NMR {Homo sapiens}
Probab=98.83 E-value=1.5e-12 Score=105.38 Aligned_cols=84 Identities=27% Similarity=0.443 Sum_probs=71.0
Q ss_pred CCCCCCceEEEEEeeCCCCcceeEEEeccCCC-CCeEEEEeCCCCHHHH-cCCCCCCEEEEECCEEcCCCCHHHHHHHHH
Q psy10428 2 SEDKTPVVRLCHILKWTDFDGYGFNLHGEKGK-TGQYIGKVDEGSPAEA-AGLKEGDHIIEVNSVNICNENHNQVVQRIK 79 (309)
Q Consensus 2 ~e~~~~~pR~v~L~K~~~~~G~GFsl~ggk~~-~Gi~V~~V~pgSpA~~-AGLq~GD~Il~VNG~~V~~~sh~dvv~~Lk 79 (309)
.+-.+..+|.|.|.|.. ..+|||.+.++... .+++|..|.++|||++ +||++||+|++|||.++.+.++.++..+++
T Consensus 21 e~~~~~~~~~v~l~k~~-~~glG~~l~~g~~~~~gv~V~~V~~~spA~~~aGL~~GD~Il~ING~~v~~~~~~~~~~~l~ 99 (112)
T 2lob_A 21 ENLYFQGIRKVLLLKED-HEGLGISITGGKEHGVPILISEIHPGQPADRCGGLHVGDAILAVNGVNLRDTKHKEAVTILS 99 (112)
Confidence 34457788999998874 47999999987543 4799999999999999 899999999999999998889999999998
Q ss_pred hCCCCeE
Q psy10428 80 AVPDETK 86 (309)
Q Consensus 80 ~s~~~vv 86 (309)
..++.+.
T Consensus 100 ~~~~~v~ 106 (112)
T 2lob_A 100 QQRGEIE 106 (112)
Confidence 7765543
No 142
>1v6b_A Harmonin isoform A1; structural genomics, usher syndrome, USH1, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Mus musculus} SCOP: b.36.1.1
Probab=99.18 E-value=7.9e-11 Score=95.71 Aligned_cols=83 Identities=25% Similarity=0.294 Sum_probs=67.0
Q ss_pred ceEEEEEeeCCCCcceeEEEeccCCC--CCeEEEEeCCCCHHHHc-CCCCCCEEEEECCEEcCCCCHHHHHHHHHhC---
Q psy10428 8 VVRLCHILKWTDFDGYGFNLHGEKGK--TGQYIGKVDEGSPAEAA-GLKEGDHIIEVNSVNICNENHNQVVQRIKAV--- 81 (309)
Q Consensus 8 ~pR~v~L~K~~~~~G~GFsl~ggk~~--~Gi~V~~V~pgSpA~~A-GLq~GD~Il~VNG~~V~~~sh~dvv~~Lk~s--- 81 (309)
..|.+.+.+. .||||+|.++... ..++|..|.++|||+++ ||++||+|++|||.++.+.+|.+++.+|+..
T Consensus 18 ~~~~~~~~~~---~glG~~i~gg~~~~~~~i~I~~V~~gspA~~aggL~~GD~Il~Ing~~v~~~~~~~~~~~l~~~~~~ 94 (118)
T 1v6b_A 18 DVRLLRIKKE---GSLDLALEGGVDSPVGKVVVSAVYEGGAAERHGGVVKGDEIMAINGKIVTDYTLAEAEAALQKAWNQ 94 (118)
T ss_dssp CEEEEEEESC---SCCCCEEEEBTTSSSCSEEEEECCTTSHHHHHCSSCTTCEEEEESSCBCTTCBHHHHHHHHHHHHHH
T ss_pred eEEEEEECCC---CccCEEEEcccCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHHhhhc
Confidence 4677777765 4899999887532 34999999999999999 7999999999999999999999999998764
Q ss_pred CCCeEEEEEEeC
Q psy10428 82 PDETKLLVVDVA 93 (309)
Q Consensus 82 ~~~vvllvv~r~ 93 (309)
.+..+.+++.|.
T Consensus 95 ~g~~v~l~v~r~ 106 (118)
T 1v6b_A 95 GGDWIDLVVAVC 106 (118)
T ss_dssp TCSEEEEEEECC
T ss_pred CCCeEEEEEEeC
Confidence 244445555553
No 143
>1uit_A Human discs large 5 protein; PDZ domain, HDLG5, maguk family, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.18 E-value=1.5e-10 Score=93.42 Aligned_cols=85 Identities=25% Similarity=0.350 Sum_probs=68.7
Q ss_pred CceEEEEEeeCCCCcceeEEEeccCCCCCeEEEEeCCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCCeE
Q psy10428 7 PVVRLCHILKWTDFDGYGFNLHGEKGKTGQYIGKVDEGSPAEAAGLKEGDHIIEVNSVNICNENHNQVVQRIKAVPDETK 86 (309)
Q Consensus 7 ~~pR~v~L~K~~~~~G~GFsl~ggk~~~Gi~V~~V~pgSpA~~AGLq~GD~Il~VNG~~V~~~sh~dvv~~Lk~s~~~vv 86 (309)
+.+|.|.|.+.. .+|||.+.++.. .|++|..|.+++||+++||++||+|++|||+++.+.++.+++..++.. +..+
T Consensus 18 ~~~~~v~l~~~~--~~lG~~~~~~~~-~gv~V~~V~~~spA~~aGL~~GD~Il~vng~~v~~~~~~~~~~~~~~~-g~~v 93 (117)
T 1uit_A 18 EEPRHVKVQKGS--EPLGISIVSGEK-GGIYVSKVTVGSIAHQAGLEYGDQLLEFNGINLRSATEQQARLIIGQQ-CDTI 93 (117)
T ss_dssp CCCEEEEEECSS--CCCCEEEEECTT-SCEEEEEECTTSHHHHHTCCTTCEECEETTEETTTCCHHHHHHHTTSC-CSEE
T ss_pred CCCEEEEEEeCC--CCccEEEEccCC-CCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHcC-CCeE
Confidence 467889999976 899999987743 489999999999999999999999999999999888777776555544 4444
Q ss_pred EEEEEeCCe
Q psy10428 87 LLVVDVASE 95 (309)
Q Consensus 87 llvv~r~~~ 95 (309)
.+.+.|.+.
T Consensus 94 ~l~v~r~~~ 102 (117)
T 1uit_A 94 TILAQYNPH 102 (117)
T ss_dssp EEEECCCSC
T ss_pred EEEEEECCc
Confidence 566666544
No 144
>3qik_A Phosphatidylinositol 3,4,5-trisphosphate-dependen exchanger 1 protein; PDZ domain, structural genomics consortium, SGC, hydrolase R; 2.29A {Homo sapiens}
Probab=99.18 E-value=1.4e-10 Score=92.93 Aligned_cols=78 Identities=26% Similarity=0.379 Sum_probs=64.2
Q ss_pred eEEEEEeeCCCCcceeEEEeccCCCCCeEEEEeCCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHh---CCCCe
Q psy10428 9 VRLCHILKWTDFDGYGFNLHGEKGKTGQYIGKVDEGSPAEAAGLKEGDHIIEVNSVNICNENHNQVVQRIKA---VPDET 85 (309)
Q Consensus 9 pR~v~L~K~~~~~G~GFsl~ggk~~~Gi~V~~V~pgSpA~~AGLq~GD~Il~VNG~~V~~~sh~dvv~~Lk~---s~~~v 85 (309)
.+.+.|.+.. .+|||.+... ..+++|..|.++|||+++||++||+|++|||..+...+|+++...++. .+..+
T Consensus 18 ~~~l~l~~~~--~g~G~~l~~~--~~~~~I~~V~~gSpA~~AGL~~GD~I~~Ing~~v~~~s~~dv~~~i~~~~~~g~~v 93 (101)
T 3qik_A 18 AKRLLILPQE--EDYGFDIEEK--NKAVVVKSVQRGSLAEVAGLQVGRKIYSINEDLVFLRPFSEVESILNQSFCSRRPL 93 (101)
T ss_dssp EEEEEECCCS--SSSSEEEEEE--TTEEEEEEECTTSHHHHHTCCTTCBEEEETTEESTTSCHHHHHHHHHHHHHTTCCE
T ss_pred cCeEEEEeCC--CcccEEEEcc--CCCeEEEEECCCCHHHHcCCCCCCEEEEECCEEcCcCCHHHHHHHHHHhhccCCeE
Confidence 3556667654 8999998864 347899999999999999999999999999999977899999999976 45556
Q ss_pred EEEEE
Q psy10428 86 KLLVV 90 (309)
Q Consensus 86 vllvv 90 (309)
.++++
T Consensus 94 ~LLV~ 98 (101)
T 3qik_A 94 RLLVA 98 (101)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 55554
No 145
>1v5l_A PDZ and LIM domain 3; actinin alpha 2 associated LIM protein; PDZ domain, cytoskeleton, actin binding, structural genomics; NMR {Mus musculus} SCOP: b.36.1.1
Probab=99.17 E-value=1.2e-11 Score=97.86 Aligned_cols=88 Identities=25% Similarity=0.279 Sum_probs=70.5
Q ss_pred CCceEEEEEeeCCCCcceeEEEeccCCC-CCeEEEEeCCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCC
Q psy10428 6 TPVVRLCHILKWTDFDGYGFNLHGEKGK-TGQYIGKVDEGSPAEAAGLKEGDHIIEVNSVNICNENHNQVVQRIKAVPDE 84 (309)
Q Consensus 6 ~~~pR~v~L~K~~~~~G~GFsl~ggk~~-~Gi~V~~V~pgSpA~~AGLq~GD~Il~VNG~~V~~~sh~dvv~~Lk~s~~~ 84 (309)
.+..+.+.+. .. .+|||.+.++.+. .+++|..|.++|||+++||++||+|++|||.++...+|.++..+|+.. +.
T Consensus 3 ~g~~~~v~~~-~~--~~lG~~l~~g~~~~~~~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~l~~~-g~ 78 (103)
T 1v5l_A 3 SGSSGNVVLP-GP--APWGFRLSGGIDFNQPLVITRITPGSKAAAANLCPGDVILAIDGFGTESMTHADAQDRIKAA-SY 78 (103)
T ss_dssp SCCCBCCEEE-SS--SCCSBCCEEETTTTEEEECSCBCTTSTTGGGTCCTTCBEEEETTEECSSCCHHHHHHHHTTC-CS
T ss_pred CCCEEEEEEc-CC--CCcCEEEeccccCCCCeEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhC-CC
Confidence 3455556554 33 6899999877643 378999999999999999999999999999999777799999999887 55
Q ss_pred eEEEEEEeCCeee
Q psy10428 85 TKLLVVDVASEEY 97 (309)
Q Consensus 85 vvllvv~r~~~~~ 97 (309)
.+.+.+.|++...
T Consensus 79 ~v~l~v~R~g~~~ 91 (103)
T 1v5l_A 79 QLCLKIDRAETRL 91 (103)
T ss_dssp EEECEECCCTTTT
T ss_pred eEEEEEEECCeEc
Confidence 5566777765443
No 146
>2qbw_A PDZ-fibronectin fusion protein; fibronectin PDZ, unknown function; 1.80A {Homo sapiens} PDB: 3ch8_A
Probab=99.17 E-value=2e-10 Score=99.79 Aligned_cols=70 Identities=30% Similarity=0.554 Sum_probs=61.1
Q ss_pred cceeEEEeccCC---------CCCeEEEEeCCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCCeEEEEEE
Q psy10428 21 DGYGFNLHGEKG---------KTGQYIGKVDEGSPAEAAGLKEGDHIIEVNSVNICNENHNQVVQRIKAVPDETKLLVVD 91 (309)
Q Consensus 21 ~G~GFsl~ggk~---------~~Gi~V~~V~pgSpA~~AGLq~GD~Il~VNG~~V~~~sh~dvv~~Lk~s~~~vvllvv~ 91 (309)
.||||+|.|+.+ ..|++|..|.++|||++ ||++||+|++|||.++.+.+|.+++.+++..++.+.+.+++
T Consensus 2 ~g~Gf~i~gg~~~~~~~~~~~~~g~~V~~v~~~spA~~-gl~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~v~r 80 (195)
T 2qbw_A 2 PELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPASK-LLQPGDKIIQANGYSFINIEHGQAVSLLKTFQNTVELIIVR 80 (195)
T ss_dssp CCSSEEEEECTTSCCCSSCTTCCSEEEEEECTTSTTTT-TCCTTCEEEEETTEECTTCCHHHHHHHHHHCCSEEEEEEEE
T ss_pred CcccEEEECCcCCCCCccccCCCCEEEEEECCCChHHh-CCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEE
Confidence 689999999753 46899999999999999 99999999999999999999999999999987755444444
No 147
>2la8_A Inactivation-NO-after-potential D protein, KON-TI peptide; peptide binding protein; NMR {Drosophila melanogaster}
Probab=99.16 E-value=1.3e-10 Score=92.96 Aligned_cols=80 Identities=18% Similarity=0.170 Sum_probs=65.9
Q ss_pred EEEEEeeCCCCcceeEEEeccCCCCCeEEEEeCCCCHHHHcC-CCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCCeEEE
Q psy10428 10 RLCHILKWTDFDGYGFNLHGEKGKTGQYIGKVDEGSPAEAAG-LKEGDHIIEVNSVNICNENHNQVVQRIKAVPDETKLL 88 (309)
Q Consensus 10 R~v~L~K~~~~~G~GFsl~ggk~~~Gi~V~~V~pgSpA~~AG-Lq~GD~Il~VNG~~V~~~sh~dvv~~Lk~s~~~vvll 88 (309)
..+.|.|.. ..+|||.+.+. ..|++|..|.++|||+++| |++||+|++|||.++.+.++.++..+++..++.+ .+
T Consensus 4 ~~v~L~k~~-~~glG~~i~~~--~~gv~V~~V~~gspA~~aG~L~~GD~Il~Ing~~v~~~~~~~~~~~~~~~~~~v-~l 79 (106)
T 2la8_A 4 FNVDLMKKA-GKELGLSLSPN--EIGCTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGLPFQVCYALFKGANGKV-SM 79 (106)
T ss_dssp EEEEECCBS-SSTTCCEEEEC--SSSEEEEECCTTSCHHHHTTCCTTCEEEEESSCBCSSSCHHHHHHHHHSCBSCE-EE
T ss_pred EEEEEEeCC-CCccCEEEEeC--CCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHhCCCCeE-EE
Confidence 457777553 48999998773 4689999999999999999 9999999999999999889999999888876655 44
Q ss_pred EEEeC
Q psy10428 89 VVDVA 93 (309)
Q Consensus 89 vv~r~ 93 (309)
.+.|.
T Consensus 80 ~v~R~ 84 (106)
T 2la8_A 80 EVTRP 84 (106)
T ss_dssp EEEEC
T ss_pred EEEeC
Confidence 44543
No 148
>3cyy_A Tight junction protein ZO-1; protein-ligand complex, cell junction, membrane, phosphoprot domain, tight junction, transmembrane; 2.40A {Homo sapiens}
Probab=99.15 E-value=4.7e-10 Score=86.08 Aligned_cols=82 Identities=18% Similarity=0.287 Sum_probs=65.4
Q ss_pred ceEEEEEeeCCCCcceeEEEeccCCCCCeEEEEeCCCCHHHHcC-CCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCCeE
Q psy10428 8 VVRLCHILKWTDFDGYGFNLHGEKGKTGQYIGKVDEGSPAEAAG-LKEGDHIIEVNSVNICNENHNQVVQRIKAVPDETK 86 (309)
Q Consensus 8 ~pR~v~L~K~~~~~G~GFsl~ggk~~~Gi~V~~V~pgSpA~~AG-Lq~GD~Il~VNG~~V~~~sh~dvv~~Lk~s~~~vv 86 (309)
++..+.+.+......|||.+. .|++|..|.++|||+++| |++||+|++|||.++.+.+|.++..+++...+ .+
T Consensus 2 ~~~~v~~~~~~~~~~~g~~~~-----~gv~V~~v~~~s~A~~aG~l~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~-~v 75 (92)
T 3cyy_A 2 KPTKVTLVKSAKNEEYGLRLA-----SHIFVKEISQDSLAARDGNIQEGDVVLKINGTVTENMSLTDAKTLIERSKG-KL 75 (92)
T ss_dssp CCEEEEEECSSTTSCCCEEEE-----EEEEEEEECTTCHHHHSCCCCTTCEEEEETTEECTTCCHHHHHHHHHTTTT-EE
T ss_pred CcEEEEEEeCCCCCCCCEEEe-----CCEEEEEECCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCC-cE
Confidence 456677766554468999876 369999999999999999 99999999999999977799999999988765 44
Q ss_pred EEEEEeCCe
Q psy10428 87 LLVVDVASE 95 (309)
Q Consensus 87 llvv~r~~~ 95 (309)
.+.+.|++.
T Consensus 76 ~l~v~r~g~ 84 (92)
T 3cyy_A 76 KMVVQRDER 84 (92)
T ss_dssp EEEEEC---
T ss_pred EEEEEeCCc
Confidence 566666553
No 149
>2d8i_A T-cell lymphoma invasion and metastasis 1 variant; PDZ domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.15 E-value=6.9e-11 Score=96.20 Aligned_cols=84 Identities=29% Similarity=0.341 Sum_probs=68.0
Q ss_pred CceEEEEEeeCCCC-cceeEEEeccCC--CCCeEEEEeCCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCC
Q psy10428 7 PVVRLCHILKWTDF-DGYGFNLHGEKG--KTGQYIGKVDEGSPAEAAGLKEGDHIIEVNSVNICNENHNQVVQRIKAVPD 83 (309)
Q Consensus 7 ~~pR~v~L~K~~~~-~G~GFsl~ggk~--~~Gi~V~~V~pgSpA~~AGLq~GD~Il~VNG~~V~~~sh~dvv~~Lk~s~~ 83 (309)
..+|.|.|.|.+.. .+|||.|.+... ..+++|..|.++|||+++||++||+|++|||.++...+|.++..+++..
T Consensus 14 ~~~~~v~l~k~~~~~~~~G~~v~~~~~~~~~gv~V~~V~~~spA~~aGL~~GD~Il~Ing~~v~~~~~~~~~~~l~~~-- 91 (114)
T 2d8i_A 14 KVTQSIHIEKSDTAADTYGFSLSSVEEDGIRRLYVNSVKETGLASKKGLKAGDEILEINNRAADALNSSMLKDFLSQP-- 91 (114)
T ss_dssp CEEEEEEEECSCTTTCCCCCEEEEEEETTEEEEEEEECCTTSSHHHHTCCTTCCEEEESSCBGGGCCHHHHHHHHTSS--
T ss_pred CceEEEEEEeCCCCccccCEEEEecCcCCcCCEEEEEeCCCCHHHHcCCCCCCEEEEECCEECCCcCHHHHHHHHhCC--
Confidence 46899999998632 279999886432 2479999999999999999999999999999999888899999888743
Q ss_pred CeEEEEEEeC
Q psy10428 84 ETKLLVVDVA 93 (309)
Q Consensus 84 ~vvllvv~r~ 93 (309)
.+.+++.|.
T Consensus 92 -~v~l~v~R~ 100 (114)
T 2d8i_A 92 -SLGLLVRTY 100 (114)
T ss_dssp -EEEEEEEEC
T ss_pred -cEEEEEEEC
Confidence 445555554
No 150
>3gsl_A Disks large homolog 4; PDZ domain, tandem, PSD-95, DLG4, SAP-90, GLUR6, cell juncti membrane, lipoprotein, membrane, palmitate, phosphoprotein; 2.05A {Rattus norvegicus} PDB: 3zrt_A 2ka9_A
Probab=99.14 E-value=4e-10 Score=96.94 Aligned_cols=84 Identities=33% Similarity=0.486 Sum_probs=68.6
Q ss_pred ceEEEEEeeCCCCcceeEEEeccCCC------CCeEEEEeCCCCHHHHcC-CCCCCEEEEECCEEcCCCCHHHHHHHHHh
Q psy10428 8 VVRLCHILKWTDFDGYGFNLHGEKGK------TGQYIGKVDEGSPAEAAG-LKEGDHIIEVNSVNICNENHNQVVQRIKA 80 (309)
Q Consensus 8 ~pR~v~L~K~~~~~G~GFsl~ggk~~------~Gi~V~~V~pgSpA~~AG-Lq~GD~Il~VNG~~V~~~sh~dvv~~Lk~ 80 (309)
..+.+.|.+.+ .+|||.+.++... .|++|..|.++|+|+++| |++||+|++|||.+|.+.+|.+++.+|+.
T Consensus 100 ~~~~v~l~~~~--~~lG~~~~~~~~~~~~~~~~gv~V~~V~~gs~A~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~ 177 (196)
T 3gsl_A 100 KVMEIKLIKGP--KGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVGLEDVMHEDAVAALKN 177 (196)
T ss_dssp EEEEEEEEEBT--TBSCEEEEESBTSCSBTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECSSCBHHHHHHHHHS
T ss_pred ccEEEEEecCC--CCceEEEEccCCCcCCCCCCCEEEEEECCCChHHhcCCCCCCCEEEEECCCcCCCCCHHHHHHHHHc
Confidence 45567777876 6999999876432 479999999999999999 99999999999999988889999999988
Q ss_pred CCCCeEEEEEEeCC
Q psy10428 81 VPDETKLLVVDVAS 94 (309)
Q Consensus 81 s~~~vvllvv~r~~ 94 (309)
.+..+ .+.+.|.+
T Consensus 178 ~~~~v-~l~v~R~~ 190 (196)
T 3gsl_A 178 TYDVV-YLKVAKPS 190 (196)
T ss_dssp CCEEE-EEEEEEES
T ss_pred CCCeE-EEEEeCCC
Confidence 75544 44455543
No 151
>1x5n_A Harmonin; PDZ domain, usher syndrome 1C protein, autoimmune enteropathy-related antigen AIE-75 ,antigen NY-CO-38/NY-CO- 37, PDZ-73 protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2kbs_A
Probab=99.13 E-value=1.7e-10 Score=92.48 Aligned_cols=87 Identities=26% Similarity=0.388 Sum_probs=70.0
Q ss_pred CCCCceEEEEEeeCCCCcceeEEEeccCC-CCCeEEEEeCCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCC
Q psy10428 4 DKTPVVRLCHILKWTDFDGYGFNLHGEKG-KTGQYIGKVDEGSPAEAAGLKEGDHIIEVNSVNICNENHNQVVQRIKAVP 82 (309)
Q Consensus 4 ~~~~~pR~v~L~K~~~~~G~GFsl~ggk~-~~Gi~V~~V~pgSpA~~AGLq~GD~Il~VNG~~V~~~sh~dvv~~Lk~s~ 82 (309)
...+.+|.+.+.+.. ..+|||.+.++.. ..+++|..|.+++||+++||++||+|++|||.++.+..+.++..+++..
T Consensus 11 ~~~~~~~~v~~~~~~-~~~lG~~l~~~~~~~~gv~V~~V~~~s~A~~aGL~~GD~Il~vng~~v~~~~~~~~~~~~~~~- 88 (114)
T 1x5n_A 11 NRENKEKKVFISLVG-SRGLGCSISSGPIQKPGIFISHVKPGSLSAEVGLEIGDQIVEVNGVDFSNLDHKEAVNVLKSS- 88 (114)
T ss_dssp CCCCSSEEEEECCCS-SCCCCEEEEECCSSSCSEEEEEECTTSTTTTTTCCTTCEEEEETTEETTSCCTTHHHHHHHHC-
T ss_pred CCCCCcEEEEEEEcC-CCceeEEEeecCCCCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHhcC-
Confidence 345677888886653 4899999987643 3589999999999999999999999999999999888877888888776
Q ss_pred CCeEEEEEEeC
Q psy10428 83 DETKLLVVDVA 93 (309)
Q Consensus 83 ~~vvllvv~r~ 93 (309)
.. +.+.+.|.
T Consensus 89 ~~-v~l~v~r~ 98 (114)
T 1x5n_A 89 RS-LTISIVAA 98 (114)
T ss_dssp SS-EEEEECSS
T ss_pred Ce-EEEEEEcC
Confidence 33 34555555
No 152
>1wif_A RSGI RUH-020, riken cDNA 4930408O21; PDZ domain, structural genomics, mouse cDNA, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.36.1.1
Probab=99.13 E-value=8.5e-11 Score=97.57 Aligned_cols=83 Identities=14% Similarity=0.140 Sum_probs=70.3
Q ss_pred CceEEEEEeeCCCCcceeEEEeccCCCCCeEEEEeCCCCHHHHcC-CCCCCEEEEECCEEcCCCCHHHHHHHHHhC-CCC
Q psy10428 7 PVVRLCHILKWTDFDGYGFNLHGEKGKTGQYIGKVDEGSPAEAAG-LKEGDHIIEVNSVNICNENHNQVVQRIKAV-PDE 84 (309)
Q Consensus 7 ~~pR~v~L~K~~~~~G~GFsl~ggk~~~Gi~V~~V~pgSpA~~AG-Lq~GD~Il~VNG~~V~~~sh~dvv~~Lk~s-~~~ 84 (309)
.....+.|.+.. .+|||.+.+. ..+++|..|.++|||+++| |++||+|++|||.+|.+.+|.+++.+|+.. .+.
T Consensus 26 ~~~~~~~l~k~~--~glG~~i~~~--~~~v~V~~V~~gspA~~aG~L~~GD~Il~VnG~~v~~~s~~d~~~~l~~~~~G~ 101 (126)
T 1wif_A 26 NKVIQTKLTVGN--LGLGLVVIQN--GPYLQISHLINKGAAASDGILQPGDVLISVGHANVLGYTLREFLKLLQNITIGT 101 (126)
T ss_dssp CCEEEEEEECCT--TCCCCCEEEE--TTEEEECCCCTTSSGGGCSSSCTTCBEEEESSSCCTTCCHHHHHHHHTSCCSSC
T ss_pred CceEEEEEecCC--ceEeEEEEcC--CCcEEEEEECCCCHHHHcCCCCCCCEEEEECCEEcCCCCHHHHHHHHhcCCCCC
Confidence 456677888876 8999998764 3578999999999999999 999999999999999888999999999874 355
Q ss_pred eEEEEEEeC
Q psy10428 85 TKLLVVDVA 93 (309)
Q Consensus 85 vvllvv~r~ 93 (309)
.+.+.+.|+
T Consensus 102 ~v~l~V~R~ 110 (126)
T 1wif_A 102 VLQIKAYRG 110 (126)
T ss_dssp EEEEEEESS
T ss_pred EEEEEEEEC
Confidence 666777765
No 153
>1uf1_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.13 E-value=9.7e-10 Score=90.03 Aligned_cols=88 Identities=30% Similarity=0.387 Sum_probs=70.2
Q ss_pred CCceEEEEEeeCCCCcceeEEEeccCC-CCCeEEEEeCCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCC
Q psy10428 6 TPVVRLCHILKWTDFDGYGFNLHGEKG-KTGQYIGKVDEGSPAEAAGLKEGDHIIEVNSVNICNENHNQVVQRIKAVPDE 84 (309)
Q Consensus 6 ~~~pR~v~L~K~~~~~G~GFsl~ggk~-~~Gi~V~~V~pgSpA~~AGLq~GD~Il~VNG~~V~~~sh~dvv~~Lk~s~~~ 84 (309)
.+.++.+.+.... ..+|||.+.++.. ..|++|..|.++|||+++||++||+|++|||.++.+.++.+++..++.. .
T Consensus 18 ~g~~~~v~v~~~~-~~~lG~~~~~~~~~~~gv~V~~V~~~spA~~aGL~~GD~I~~vng~~v~~~~~~~~~~~~~~~--~ 94 (128)
T 1uf1_A 18 GGDEKKVNLVLGD-GRSLGLTIRGGAEYGLGIYITGVDPGSEAEGSGLKVGDQILEVNGRSFLNILHDEAVRLLKSS--R 94 (128)
T ss_dssp CSSEEEEEEECCS-SCCCCEEEECCTTTTCCCEEEEECTTCHHHHHTCCTTCEEEEETTEECSSCCHHHHHHHHTTC--S
T ss_pred CCcEEEEEEEECC-CCccCEEEECcccCCCCEEEEEECCCCHHHHCCCCCCCEEEEECCEECCCCCHHHHHHHHhcC--C
Confidence 5677778877653 2689999987643 2489999999999999999999999999999999888888888888764 3
Q ss_pred eEEEEEEeCCee
Q psy10428 85 TKLLVVDVASEE 96 (309)
Q Consensus 85 vvllvv~r~~~~ 96 (309)
.+.+.+.|.+..
T Consensus 95 ~v~l~v~R~g~~ 106 (128)
T 1uf1_A 95 HLILTVKDVGRL 106 (128)
T ss_dssp EEEEEEECCSCC
T ss_pred eEEEEEEECCcc
Confidence 445666776543
No 154
>2edp_A Fragment, shroom family member 4; APX/shroom family member, KIAA1202 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.12 E-value=2.1e-10 Score=90.20 Aligned_cols=87 Identities=16% Similarity=0.284 Sum_probs=67.5
Q ss_pred CCceEEEEEeeCCCCcceeEEEeccCCC-CCeEEEEeCCCCHHHHc-CCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCC
Q psy10428 6 TPVVRLCHILKWTDFDGYGFNLHGEKGK-TGQYIGKVDEGSPAEAA-GLKEGDHIIEVNSVNICNENHNQVVQRIKAVPD 83 (309)
Q Consensus 6 ~~~pR~v~L~K~~~~~G~GFsl~ggk~~-~Gi~V~~V~pgSpA~~A-GLq~GD~Il~VNG~~V~~~sh~dvv~~Lk~s~~ 83 (309)
..+.+.+.+..... .+|||.+.++... .+++|..|.++|||+++ ||++||+|++|||.++... +.+++.+++..+.
T Consensus 7 ~~~~~~~~v~~~~~-~~~G~~~~gg~~~~~~v~V~~V~~~spA~~agGL~~GD~I~~ing~~v~~~-~~~~~~~~~~~~~ 84 (100)
T 2edp_A 7 GGSFQYVPVQLQGG-APWGFTLKGGLEHCEPLTVSKIEDGGKAALSQKMRTGDELVNINGTPLYGS-RQEALILIKGSFR 84 (100)
T ss_dssp CCCCEEEEEECCSC-SCCCCCEEEEGGGTEEEEECCCCTTSHHHHHTSCCTTCEEEEETTEECCSC-SHHHHHHHHTCCS
T ss_pred CCCcEEEEEEECCC-CCcCEEEeccCCCCCCeEEEEECCCCHHHHcCCCCCCCEEEEECCEEccch-HHHHHHHHHhCCC
Confidence 34556666665532 6899999886532 46899999999999999 8999999999999999775 7889999988755
Q ss_pred CeEEEEEEeCCe
Q psy10428 84 ETKLLVVDVASE 95 (309)
Q Consensus 84 ~vvllvv~r~~~ 95 (309)
.+ .+.+.|.+.
T Consensus 85 ~v-~l~v~R~~~ 95 (100)
T 2edp_A 85 IL-KLIVRRRNS 95 (100)
T ss_dssp SC-EEEEEECCC
T ss_pred eE-EEEEEeCCC
Confidence 54 455555543
No 155
>1p1d_A PDZ45, glutamate receptor interacting protein; PDZ domain, tandem repeats, scaffold protein, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1 b.36.1.1 PDB: 1p1e_A 1x5r_A
Probab=99.11 E-value=4.2e-10 Score=98.30 Aligned_cols=88 Identities=18% Similarity=0.317 Sum_probs=73.7
Q ss_pred CceEEEEEeeCCCCcceeEEEeccCC-----CCCeEEEEeCCCCHHHHcC-CCCCCEEEEECCEEcCCCCHHHHHHHHHh
Q psy10428 7 PVVRLCHILKWTDFDGYGFNLHGEKG-----KTGQYIGKVDEGSPAEAAG-LKEGDHIIEVNSVNICNENHNQVVQRIKA 80 (309)
Q Consensus 7 ~~pR~v~L~K~~~~~G~GFsl~ggk~-----~~Gi~V~~V~pgSpA~~AG-Lq~GD~Il~VNG~~V~~~sh~dvv~~Lk~ 80 (309)
.+.+.|.|.|++ +.||||.+.++.. ..+++|..|.++|||+++| |+.||+|++|||..+.+.+|.++..+|+.
T Consensus 5 ~~~~~v~l~~~~-~~glG~~i~~~~~~~~~~~~~~~V~~v~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~ 83 (196)
T 1p1d_A 5 TETTEVVLTADP-VTGFGIQLQGSVFATETLSSPPLISYIEADSPAERCGVLQIGDRVMAINGIPTEDSTFEEANQLLRD 83 (196)
T ss_dssp CEEEEEEEECBT-TTBCCCEEEECSSCSSSCSCSEEEEECCTTSHHHHTSCCCSSCCEEEETTBCSTTSCHHHHHHHHHT
T ss_pred cEEEEEEEEeCC-CCccCEEEeCCcCCCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHh
Confidence 467889999884 5899999998742 4579999999999999999 99999999999999987799999999988
Q ss_pred CC-CCeEEEEEEeCCe
Q psy10428 81 VP-DETKLLVVDVASE 95 (309)
Q Consensus 81 s~-~~vvllvv~r~~~ 95 (309)
.. +..+.+.+.|.+.
T Consensus 84 ~~~g~~v~l~v~R~~~ 99 (196)
T 1p1d_A 84 SSITSKVTLEIEFDVA 99 (196)
T ss_dssp CCSSSEEEEEEEECSC
T ss_pred CCCCCeEEEEEEecCC
Confidence 74 4555566666543
No 156
>2qt5_A Glutamate receptor-interacting protein 1; PDZ-peptide complex, PDZ tandem, alternative splicing, cell junction, cytoplasm; 2.30A {Rattus norvegicus}
Probab=99.11 E-value=6.7e-10 Score=97.05 Aligned_cols=87 Identities=20% Similarity=0.311 Sum_probs=71.9
Q ss_pred CCCceEEEEEeeCCCCcceeEEEeccCC-CCCeEEEEeCCCCHHHHc-CCCCCCEEEEECCEEcCCCCHHHHHHHHHhCC
Q psy10428 5 KTPVVRLCHILKWTDFDGYGFNLHGEKG-KTGQYIGKVDEGSPAEAA-GLKEGDHIIEVNSVNICNENHNQVVQRIKAVP 82 (309)
Q Consensus 5 ~~~~pR~v~L~K~~~~~G~GFsl~ggk~-~~Gi~V~~V~pgSpA~~A-GLq~GD~Il~VNG~~V~~~sh~dvv~~Lk~s~ 82 (309)
.+..++.|.|.+.. ..+|||.+.++.. ..+++|..|.++|||+++ ||+.||+|++|||.++.+.+|.++..+++..+
T Consensus 4 ~~~~~~~v~l~~~~-~~~lG~~i~~~~~~~~~~~V~~v~~~spA~~aggl~~GD~I~~vng~~v~~~~~~~~~~~~~~~g 82 (200)
T 2qt5_A 4 SFKGSTVVELMKKE-GTTLGLTVSGGIDKDGKPRVSNLRQGGIAARSDQLDVGDYIKAVNGINLAKFRHDEIISLLKNVG 82 (200)
T ss_dssp CCEEEEEEEEECCT-TCCCCEEEECCTTSSSCSEEEEECTTSHHHHTTSCCTTCEEEEETTEECTTSCHHHHHHHHHTCC
T ss_pred ccCCCEEEEEEeCC-CCCCCEEEecccCCCCCeEEEEECCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Confidence 45667889998764 5899999998754 357999999999999999 89999999999999999888899998888776
Q ss_pred CCeEEEEEEeC
Q psy10428 83 DETKLLVVDVA 93 (309)
Q Consensus 83 ~~vvllvv~r~ 93 (309)
..+ .+.+.|+
T Consensus 83 ~~v-~l~v~R~ 92 (200)
T 2qt5_A 83 ERV-VLEVEYE 92 (200)
T ss_dssp SEE-EEEEEEE
T ss_pred CeE-EEEEecc
Confidence 544 4444443
No 157
>1wh1_A KIAA1095 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.10 E-value=2.2e-10 Score=93.70 Aligned_cols=86 Identities=21% Similarity=0.402 Sum_probs=69.2
Q ss_pred ceEEEEEeeCCCCcceeEEEeccCC---CCCeEEEEeCCCCHHHHcC-CCCCCEEEEECCEEcCCCCHHHHHHHHHhCCC
Q psy10428 8 VVRLCHILKWTDFDGYGFNLHGEKG---KTGQYIGKVDEGSPAEAAG-LKEGDHIIEVNSVNICNENHNQVVQRIKAVPD 83 (309)
Q Consensus 8 ~pR~v~L~K~~~~~G~GFsl~ggk~---~~Gi~V~~V~pgSpA~~AG-Lq~GD~Il~VNG~~V~~~sh~dvv~~Lk~s~~ 83 (309)
..+.+.+.+...+.+|||.+..... ..|++|..|.+++||+++| |++||+|++|||..| .++.++..+|+...+
T Consensus 19 ~~~~~~~~~~~~~~~lG~~~~~~~~~~~~~gv~V~~V~~~spA~~aG~l~~GD~I~~ing~~v--~~~~~~~~~l~~~~g 96 (124)
T 1wh1_A 19 ELEEVDLYRMNSQDKLGLTVCYRTDDEDDIGIYISEIDPNSIAAKDGRIREGDRIIQINGIEV--QNREEAVALLTSEEN 96 (124)
T ss_dssp EECCBCCCCSSTTCCCCEEEECCCCCSSCCCEEEEEECSSSHHHHTCCCCTTCEEEEESSCBC--CSHHHHHHHHTCSSC
T ss_pred eEEEEEEEecCCCCcccEEEEecCCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEEC--CCHHHHHHHHHhCCC
Confidence 4455667776656789999987653 2689999999999999999 999999999999999 679999999987655
Q ss_pred CeEEEEEEeCCe
Q psy10428 84 ETKLLVVDVASE 95 (309)
Q Consensus 84 ~vvllvv~r~~~ 95 (309)
..+.+.+.|.+.
T Consensus 97 ~~v~l~v~R~g~ 108 (124)
T 1wh1_A 97 KNFSLLIARPEL 108 (124)
T ss_dssp CSCCEEEEECSS
T ss_pred CEEEEEEEECCE
Confidence 555566666654
No 158
>1w9e_A Syntenin 1; cell adhesion, adhesion/complex, PDZ domain, scaffolding protein signaling protein; 1.56A {Homo sapiens} SCOP: b.36.1.1 b.36.1.1 PDB: 1n99_A 1v1t_A 1obz_A 1w9o_A 1w9q_A 1ybo_A
Probab=99.09 E-value=1.1e-09 Score=93.40 Aligned_cols=85 Identities=20% Similarity=0.257 Sum_probs=69.0
Q ss_pred CCceEEEEEeeCCCCcceeEEEeccCCCCCeEEEEeCCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCCe
Q psy10428 6 TPVVRLCHILKWTDFDGYGFNLHGEKGKTGQYIGKVDEGSPAEAAGLKEGDHIIEVNSVNICNENHNQVVQRIKAVPDET 85 (309)
Q Consensus 6 ~~~pR~v~L~K~~~~~G~GFsl~ggk~~~Gi~V~~V~pgSpA~~AGLq~GD~Il~VNG~~V~~~sh~dvv~~Lk~s~~~v 85 (309)
.+.+|.|.|.|.. +.+|||.+... ..|++|..|.++|||+++||+.||+|++|||.++.+.++..+..+++...+..
T Consensus 2 a~~~r~v~l~k~~-~~~lG~~~~~~--~~g~~V~~v~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~~~~~~~~~ 78 (166)
T 1w9e_A 2 AMDPREVILCKDQ-DGKIGLRLKSI--DNGIFVQLVQANSPASLVGLRFGDQVLQINGENCAGWSSDKAHKVLKQAFGEK 78 (166)
T ss_dssp -CCCEEEEEECCT-TSCCSEEEEEE--TTEEEEEEECTTSHHHHTTCCTTCEEEEETTEECTTCCHHHHHHHHHHCCSSE
T ss_pred CCCCEEEEEEeCC-CCcEeEEEEeC--CCCEEEEEECCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHhcCCCCE
Confidence 3578999999974 57899998875 35899999999999999999999999999999997777655667777766655
Q ss_pred EEEEEEeC
Q psy10428 86 KLLVVDVA 93 (309)
Q Consensus 86 vllvv~r~ 93 (309)
+.+.+++.
T Consensus 79 v~l~vr~~ 86 (166)
T 1w9e_A 79 ITMTIRDR 86 (166)
T ss_dssp EEEEEECC
T ss_pred EEEEEEcC
Confidence 56666544
No 159
>2eaq_A LIM domain only protein 7; conserved hypothetical protein, structural genomics, NPPSFA; 1.46A {Homo sapiens}
Probab=99.07 E-value=7.2e-10 Score=84.94 Aligned_cols=82 Identities=20% Similarity=0.297 Sum_probs=62.7
Q ss_pred EEEEEeeCC-CCcceeEEEeccCCCCCeEEEEeCCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHhC-CCCeEE
Q psy10428 10 RLCHILKWT-DFDGYGFNLHGEKGKTGQYIGKVDEGSPAEAAGLKEGDHIIEVNSVNICNENHNQVVQRIKAV-PDETKL 87 (309)
Q Consensus 10 R~v~L~K~~-~~~G~GFsl~ggk~~~Gi~V~~V~pgSpA~~AGLq~GD~Il~VNG~~V~~~sh~dvv~~Lk~s-~~~vvl 87 (309)
+.+.+.+.+ .+.+|||.+... ..|++|..|.++|||+++||++||+|++|||.++.+.++.++..+++.. .+..+.
T Consensus 5 ~~~~~~~~~~~~~~lG~~~~~~--~~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~g~~v~ 82 (90)
T 2eaq_A 5 MRISINQTPGKSLDFGFTIKWD--IPGIFVASVEAGSPAEFSQLQVDDEIIAINNTKFSYNDSKEWEEAMAKAQETGHLV 82 (90)
T ss_dssp EEEEEECCTTCSSCCSEEEEEE--TTEEEEEEECTTSHHHHTTCCTTCEEEEETTEECCTTCHHHHHHHHHHHHHHTEEE
T ss_pred eEEEEEecCCCCCcccEEEEec--CCCEEEEEECCCChHHHcCCCCCCEEEEECCEEccCCCHHHHHHHHHhcCCCCEEE
Confidence 345555543 234799988754 3589999999999999999999999999999999888999999888753 234445
Q ss_pred EEEEeC
Q psy10428 88 LVVDVA 93 (309)
Q Consensus 88 lvv~r~ 93 (309)
+.+.|+
T Consensus 83 l~v~R~ 88 (90)
T 2eaq_A 83 MDVRRY 88 (90)
T ss_dssp EEEEEE
T ss_pred EEEEeC
Confidence 555553
No 160
>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A 3lh5_A
Probab=99.05 E-value=6.7e-10 Score=108.00 Aligned_cols=86 Identities=28% Similarity=0.433 Sum_probs=72.8
Q ss_pred CceEEEEEeeCCCCcceeEEEeccCCCCCeEEEEeCCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHh-CCCCe
Q psy10428 7 PVVRLCHILKWTDFDGYGFNLHGEKGKTGQYIGKVDEGSPAEAAGLKEGDHIIEVNSVNICNENHNQVVQRIKA-VPDET 85 (309)
Q Consensus 7 ~~pR~v~L~K~~~~~G~GFsl~ggk~~~Gi~V~~V~pgSpA~~AGLq~GD~Il~VNG~~V~~~sh~dvv~~Lk~-s~~~v 85 (309)
+.+|.|.+.++. +|||.+.++.. .|++|..|.+||||+++||++||+|++|||.++.+.+|++++.+|+. ..+..
T Consensus 8 ~~~~~v~~~k~~---~lG~~i~gg~~-~gi~V~~V~~gspA~~aGL~~GD~Il~VnG~~v~~~~~~e~~~~l~~~~~g~~ 83 (391)
T 3tsz_A 8 PSMKLVKFRKGD---SVGLRLAGGND-VGIFVAGVLEDSPAAKEGLEEGDQILRVNNVDFTNIIREEAVLFLLDLPKGEE 83 (391)
T ss_dssp -CEEEEEEECCS---SCCEEEEEETT-TEEEEEEECTTCHHHHTTCCTTEEEEEETTEECTTCCHHHHHHHHHHSCTTSE
T ss_pred CCcEEEEeecCC---ceeEEEEecCC-CCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhhcCCCe
Confidence 467888888874 79999998754 69999999999999999999999999999999998999999999987 45556
Q ss_pred EEEEEEeCCee
Q psy10428 86 KLLVVDVASEE 96 (309)
Q Consensus 86 vllvv~r~~~~ 96 (309)
+.+.+.+.+..
T Consensus 84 v~l~v~r~~~~ 94 (391)
T 3tsz_A 84 VTILAQKKKDV 94 (391)
T ss_dssp EEEEEEECHHH
T ss_pred EEEEEeeCCcc
Confidence 66777776543
No 161
>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell adhesion; 2.90A {Homo sapiens}
Probab=99.03 E-value=7.3e-10 Score=110.25 Aligned_cols=84 Identities=29% Similarity=0.449 Sum_probs=71.9
Q ss_pred eEEEEEeeCCCCcceeEEEeccCCCCCeEEEEeCCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHhC-CCCeEE
Q psy10428 9 VRLCHILKWTDFDGYGFNLHGEKGKTGQYIGKVDEGSPAEAAGLKEGDHIIEVNSVNICNENHNQVVQRIKAV-PDETKL 87 (309)
Q Consensus 9 pR~v~L~K~~~~~G~GFsl~ggk~~~Gi~V~~V~pgSpA~~AGLq~GD~Il~VNG~~V~~~sh~dvv~~Lk~s-~~~vvl 87 (309)
+|+|.|.|+ .+|||.+.++.. .|++|..|.+||||+++||++||+|++|||.+|.+.+|.+++.+|+.. .+..+.
T Consensus 2 ~r~V~l~k~---~~lG~~i~gg~~-~Gi~V~~V~~gspA~~aGL~~GD~Il~VNG~~v~~~t~~e~~~~L~~~~~g~~v~ 77 (468)
T 3shw_A 2 MKLVKFRKG---DSVGLRLAGGND-VGIFVAGVLEDSPAAKEGLEEGDQILRVNNVDFTNIIREEAVLFLLDLPKGEEVT 77 (468)
T ss_dssp EEEEEEECC---SSCCEEEEEETT-TEEEEEEECSSSHHHHTTCCTTEEEEEETTEECTTCCHHHHHHHHHHSCTTSEEE
T ss_pred ceEEEEecC---CccceEEEccCc-CCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhcCCCCEEE
Confidence 689999986 689999988754 589999999999999999999999999999999999999999999883 345556
Q ss_pred EEEEeCCee
Q psy10428 88 LVVDVASEE 96 (309)
Q Consensus 88 lvv~r~~~~ 96 (309)
+.+.+.+..
T Consensus 78 L~V~r~g~~ 86 (468)
T 3shw_A 78 ILAQKKKDV 86 (468)
T ss_dssp EEEEECHHH
T ss_pred EEEEECCcc
Confidence 667765443
No 162
>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus}
Probab=99.02 E-value=1.9e-09 Score=112.04 Aligned_cols=84 Identities=29% Similarity=0.507 Sum_probs=72.3
Q ss_pred ceEEEEEeeCCCCcceeEEEeccCCCCCeEEEEeCCCCHHHHcC-CCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCCeE
Q psy10428 8 VVRLCHILKWTDFDGYGFNLHGEKGKTGQYIGKVDEGSPAEAAG-LKEGDHIIEVNSVNICNENHNQVVQRIKAVPDETK 86 (309)
Q Consensus 8 ~pR~v~L~K~~~~~G~GFsl~ggk~~~Gi~V~~V~pgSpA~~AG-Lq~GD~Il~VNG~~V~~~sh~dvv~~Lk~s~~~vv 86 (309)
.+|.|.|.+.. .+|||.+.++....|++|..|.+||+|+++| |++||+|++|||.+|.+.+|.+++.+|+..++.+
T Consensus 307 ~~~~v~l~~~~--~~lG~~i~~~~~~~gv~V~~V~~gs~A~~aG~L~~GD~Il~VNg~~v~~~~~~e~~~~l~~~~~~v- 383 (721)
T 2xkx_A 307 EPRRIVIHRGS--TGLGFNIVGGEDGEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTV- 383 (721)
T ss_pred ceEEEEEEECC--CCccEEEeccCCCCCeEEEEeCCCChHHhcCCCccCCEEEEECCEECCCCCHHHHHHHHHhcCCeE-
Confidence 57889999876 7999999887655799999999999999999 9999999999999999889999999999876554
Q ss_pred EEEEEeCC
Q psy10428 87 LLVVDVAS 94 (309)
Q Consensus 87 llvv~r~~ 94 (309)
.+++.+..
T Consensus 384 ~L~v~r~~ 391 (721)
T 2xkx_A 384 TIIAQYKP 391 (721)
T ss_pred EEEEEeCc
Confidence 44555543
No 163
>2rcz_A Tight junction protein ZO-1; PDZ, domain-swapping, cell junction, membrane, phosphorylati domain, protein binding; 1.70A {Homo sapiens} PDB: 2jwe_A 2osg_A
Probab=99.02 E-value=2.9e-09 Score=79.34 Aligned_cols=67 Identities=21% Similarity=0.346 Sum_probs=57.1
Q ss_pred CcceeEEEeccCCCCCeEEEEeCCCCHHHHcC-CCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCCeEEEEEEe
Q psy10428 20 FDGYGFNLHGEKGKTGQYIGKVDEGSPAEAAG-LKEGDHIIEVNSVNICNENHNQVVQRIKAVPDETKLLVVDV 92 (309)
Q Consensus 20 ~~G~GFsl~ggk~~~Gi~V~~V~pgSpA~~AG-Lq~GD~Il~VNG~~V~~~sh~dvv~~Lk~s~~~vvllvv~r 92 (309)
...|||.+.. |++|..|.++|||+++| |++||+|++|||.++.+.+|.++..+++...+ .+.+.+.|
T Consensus 12 ~~~~g~~~~~-----gv~V~~v~~~s~A~~aG~l~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~-~v~l~v~R 79 (81)
T 2rcz_A 12 NEEYGLRLAS-----HIFVKEISQDSLAARDGNIQEGDVVLKINGTVTENMSLTDAKTLIERSKG-KLKMVVQR 79 (81)
T ss_dssp TCCCCEEEEE-----EEEEEEECTTSHHHHHSSCCTTCEEEEETTEECTTCCHHHHHHHHHTSTT-EEEEEEEC
T ss_pred CCCCCEEEeC-----CEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHCCCC-eEEEEEEe
Confidence 4689998762 69999999999999999 99999999999999977799999999987655 44455554
No 164
>3r0h_A INAD, inactivation-NO-after-potential D protein; protein-protein complex, PDZ domain, peptide binding protein; 2.60A {Drosophila melanogaster}
Probab=98.98 E-value=2.9e-09 Score=93.00 Aligned_cols=81 Identities=17% Similarity=0.164 Sum_probs=64.9
Q ss_pred eEEEEEeeCCCCcceeEEEeccCCCCCeEEEEeCCCCHHHHcC-CCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCCeEE
Q psy10428 9 VRLCHILKWTDFDGYGFNLHGEKGKTGQYIGKVDEGSPAEAAG-LKEGDHIIEVNSVNICNENHNQVVQRIKAVPDETKL 87 (309)
Q Consensus 9 pR~v~L~K~~~~~G~GFsl~ggk~~~Gi~V~~V~pgSpA~~AG-Lq~GD~Il~VNG~~V~~~sh~dvv~~Lk~s~~~vvl 87 (309)
...+.|.+.. ..+|||.+... ..|++|..|.++|+|+++| |++||+|++|||++|.+.+|.+++.+++..++.+.+
T Consensus 114 ~~~v~l~~~~-~~~lG~~~~~~--~~gv~V~~V~~gs~A~~aG~L~~GD~Il~VNg~~v~~~~~~~~~~~l~~~~~~v~L 190 (206)
T 3r0h_A 114 KFNVDLMKKA-GKELGLSLSPN--EIGCTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGLPFQVCYALFKGANGKVSM 190 (206)
T ss_dssp EEEEEEECCT-TCCCCEEEEEC--SSCEEEEEECTTSCHHHHHHCCTTCEEEEETTEECTTCCHHHHHHHHHTCCSEEEE
T ss_pred EEEEEEecCC-CCccCeEEEcC--CceEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEE
Confidence 3445555542 36899998865 3589999999999999999 999999999999999888999999999887665544
Q ss_pred EEEEe
Q psy10428 88 LVVDV 92 (309)
Q Consensus 88 lvv~r 92 (309)
++.+.
T Consensus 191 ~V~R~ 195 (206)
T 3r0h_A 191 EVTRP 195 (206)
T ss_dssp EEEEE
T ss_pred EEEeC
Confidence 44443
No 165
>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus}
Probab=98.96 E-value=2.3e-09 Score=111.48 Aligned_cols=85 Identities=24% Similarity=0.348 Sum_probs=72.9
Q ss_pred CCceEEEEEeeCCCCcceeEEEeccCC------CCCeEEEEeCCCCHHHHcC-CCCCCEEEEECCEEcCCCCHHHHHHHH
Q psy10428 6 TPVVRLCHILKWTDFDGYGFNLHGEKG------KTGQYIGKVDEGSPAEAAG-LKEGDHIIEVNSVNICNENHNQVVQRI 78 (309)
Q Consensus 6 ~~~pR~v~L~K~~~~~G~GFsl~ggk~------~~Gi~V~~V~pgSpA~~AG-Lq~GD~Il~VNG~~V~~~sh~dvv~~L 78 (309)
...++.|.|.|+. .||||+|.|+.+ ..|++|..|.+||||+++| |+.||+|++|||.++.+.+|.+++.+|
T Consensus 57 ~~~~~~v~l~k~~--~glGf~i~gg~~~~~~~~~~g~~V~~v~~gspA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l 134 (721)
T 2xkx_A 57 EMEYEEITLERGN--SGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEAL 134 (721)
T ss_pred CceEEEEEEEeCC--CCCCEEEeCCcCCcccCCCCCeEEEEeCCCCHHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHh
Confidence 3467899999987 799999999864 4689999999999999999 999999999999999999999999999
Q ss_pred HhCCCCeEEEEEEeC
Q psy10428 79 KAVPDETKLLVVDVA 93 (309)
Q Consensus 79 k~s~~~vvllvv~r~ 93 (309)
+..+..+.+. +.|.
T Consensus 135 ~~~g~~v~l~-v~R~ 148 (721)
T 2xkx_A 135 KEAGSIVRLY-VMRR 148 (721)
T ss_pred hccccccceE-EEec
Confidence 8876655444 4444
No 166
>2qt5_A Glutamate receptor-interacting protein 1; PDZ-peptide complex, PDZ tandem, alternative splicing, cell junction, cytoplasm; 2.30A {Rattus norvegicus}
Probab=98.90 E-value=7.7e-09 Score=90.27 Aligned_cols=84 Identities=20% Similarity=0.375 Sum_probs=67.4
Q ss_pred ceEEEEEeeCCCCcceeEEEeccCC-----CCCeEEEEeCCCCHHHHcC-CCCCCEEEEECCEEcCCCCHHHHHHHHHhC
Q psy10428 8 VVRLCHILKWTDFDGYGFNLHGEKG-----KTGQYIGKVDEGSPAEAAG-LKEGDHIIEVNSVNICNENHNQVVQRIKAV 81 (309)
Q Consensus 8 ~pR~v~L~K~~~~~G~GFsl~ggk~-----~~Gi~V~~V~pgSpA~~AG-Lq~GD~Il~VNG~~V~~~sh~dvv~~Lk~s 81 (309)
.+..+.|.+.. .+|||.+.++.. ..+++|..|.++|+|+++| |++||+|++|||.++.+.+|.++..+|+.
T Consensus 106 ~~~~v~l~~~~--~~lG~~l~~g~~~~~~~~~g~~V~~v~~~s~A~~aG~l~~GD~I~~ing~~v~~~~~~~~~~~l~~- 182 (200)
T 2qt5_A 106 RTVEVTLHKEG--NTFGFVIRGGAHDDRNKSRPVVITCVRPGGPADREGTIKPGDRLLSVDGIRLLGTTHAEAMSILKQ- 182 (200)
T ss_dssp EEEEEEEECBT--TBCSEEEEEECCSSTTTCEEEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHT-
T ss_pred eEEEEEEecCC--CCeEEEEECCCCCCccCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHc-
Confidence 34455565654 789999886642 2478999999999999999 99999999999999977799999999988
Q ss_pred CCCeEEEEEEeCC
Q psy10428 82 PDETKLLVVDVAS 94 (309)
Q Consensus 82 ~~~vvllvv~r~~ 94 (309)
.+..+.+.+.|++
T Consensus 183 ~~~~v~l~v~R~~ 195 (200)
T 2qt5_A 183 CGQEATLLIEYDV 195 (200)
T ss_dssp TCSEEEEEEEEEE
T ss_pred CCCeEEEEEEECC
Confidence 4555556666643
No 167
>2yub_A LIMK-2, LIM domain kinase 2; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=98.85 E-value=8.8e-09 Score=84.00 Aligned_cols=87 Identities=17% Similarity=0.268 Sum_probs=63.4
Q ss_pred ceEEEEEeeCCC----CcceeEEEeccC--CCCCeEEEEeCC--CCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHH
Q psy10428 8 VVRLCHILKWTD----FDGYGFNLHGEK--GKTGQYIGKVDE--GSPAEAAGLKEGDHIIEVNSVNICNENHNQVVQRIK 79 (309)
Q Consensus 8 ~pR~v~L~K~~~----~~G~GFsl~ggk--~~~Gi~V~~V~p--gSpA~~AGLq~GD~Il~VNG~~V~~~sh~dvv~~Lk 79 (309)
.|+.+.|.+.+. ..||+|.+.... ...+++|..|.+ ++||+++||++||+|++|||..|...++.++..+|+
T Consensus 12 ~~~~v~l~~~~~~~~g~~G~~v~l~~~~~~~~~gv~V~~V~~~~~spA~~aGL~~GD~Il~Vng~~v~~~~~~dl~~~l~ 91 (118)
T 2yub_A 12 LPYSVTLISMPATTECRRGFSVTVESASSNYATTVQVKEVNRMHISPNNRNAIHPGDRILEINGTPVRTLRVEEVEDAIK 91 (118)
T ss_dssp SCCEEEEEEECSCSSSSCSSEEEEECTTSSSCCEEEEEECCTTTSCTTHHHHCCTTCCEEEESSSBTTTSCHHHHHHHHH
T ss_pred CCceeEEeccCCccCCCceEEEEeccccccCCCcEEEEEecCCCCChHHHcCCCCCCEEEEECCEECCCcCHHHHHHHHH
Confidence 456677766321 124444433221 235899999999 999999999999999999999997667799999998
Q ss_pred hCCCCeEEEEEEeCCe
Q psy10428 80 AVPDETKLLVVDVASE 95 (309)
Q Consensus 80 ~s~~~vvllvv~r~~~ 95 (309)
.. +..+.+.+.|++.
T Consensus 92 ~~-g~~v~l~v~R~g~ 106 (118)
T 2yub_A 92 QT-SQTLQLLIEHDPV 106 (118)
T ss_dssp CC-SSCEEEEEEECSS
T ss_pred hC-CCEEEEEEEECCE
Confidence 87 5555566666554
No 168
>3id1_A Regulator of sigma E protease; hydrolase, cell inner membrane, cell membrane, membrane, metal-binding, metalloprotease, transmembrane; 1.67A {Escherichia coli k-12} PDB: 2zpl_A
Probab=98.80 E-value=4.3e-08 Score=76.61 Aligned_cols=73 Identities=14% Similarity=0.213 Sum_probs=57.6
Q ss_pred CeEEEEeCCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCC-CCeEEEEEEeCCeeeeEeeeeecCCCC
Q psy10428 35 GQYIGKVDEGSPAEAAGLKEGDHIIEVNSVNICNENHNQVVQRIKAVP-DETKLLVVDVASEEYFKSNNITISSSL 109 (309)
Q Consensus 35 Gi~V~~V~pgSpA~~AGLq~GD~Il~VNG~~V~~~sh~dvv~~Lk~s~-~~vvllvv~r~~~~~~~~~~~~i~~~~ 109 (309)
..+|..|.++|||+++||+.||+|++|||..| .+|.++...|.... +..+.+.+.|++........+.+..+.
T Consensus 3 ~p~V~~V~~~spA~~aGl~~GD~I~~ing~~v--~~~~d~~~~l~~~~~~~~v~l~v~R~g~~~~~~~~l~l~~~~ 76 (95)
T 3id1_A 3 RPVVGEIAANSIAAEAQIAPGTELKAVDGIET--PDWDAVRLQLVDKIGDESTTITVAPFGSDQRRDVKLDLRHWA 76 (95)
T ss_dssp CCBEEEECTTSHHHHTTCCTTCEEEEETTEEC--SSHHHHHHHHHHTTTCSEEEEEEECTTCCCCEEEEEECTTCC
T ss_pred CCEEEeeCCCCHHHHcCCCCCCEEEEECCEEC--CCHHHHHHHHHHhcCCCcEEEEEEECCCCceEEEEEEccccc
Confidence 35789999999999999999999999999999 89999999887654 356667778876433344566666653
No 169
>1sgh_B Ezrin-radixin-moesin binding phosphoprotein 50; FERM-peptide complex, structural protein; 3.50A {Homo sapiens} SCOP: j.117.1.1
Probab=98.77 E-value=1.2e-09 Score=71.72 Aligned_cols=36 Identities=25% Similarity=0.397 Sum_probs=34.5
Q ss_pred ccccccHHHHHHHHhhhhccCCCc-cccccccccceecc
Q psy10428 208 LNLNMSAKELRAKLASRKKYDPKK-DYLDIKKKYDISTN 245 (309)
Q Consensus 208 ~n~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 245 (309)
|+|+|||+|+|+++ ++|+|||+ +.||+.+||+|+++
T Consensus 2 L~L~mtaAeakek~--~~Kr~~KrapqMDw~KK~Eifsn 38 (39)
T 1sgh_B 2 LDFNISLAMAKERA--HQKRSSKRAPQMDWSKKNELFSN 38 (39)
T ss_pred cCccccHHHHHHHH--HhhcccccCCcccHHHHHHHHhc
Confidence 78999999999999 99999999 99999999999876
No 170
>1p1d_A PDZ45, glutamate receptor interacting protein; PDZ domain, tandem repeats, scaffold protein, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1 b.36.1.1 PDB: 1p1e_A 1x5r_A
Probab=98.74 E-value=7.3e-08 Score=83.97 Aligned_cols=83 Identities=16% Similarity=0.248 Sum_probs=65.6
Q ss_pred EEEEEeeCCCCcceeEEEeccCC---CCCeEEEEeCCCCHHHHcC-CCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCCe
Q psy10428 10 RLCHILKWTDFDGYGFNLHGEKG---KTGQYIGKVDEGSPAEAAG-LKEGDHIIEVNSVNICNENHNQVVQRIKAVPDET 85 (309)
Q Consensus 10 R~v~L~K~~~~~G~GFsl~ggk~---~~Gi~V~~V~pgSpA~~AG-Lq~GD~Il~VNG~~V~~~sh~dvv~~Lk~s~~~v 85 (309)
+.+.|.+. ...+|||.+..... ..+++|..|.++|||+++| |++||+|++|||.++.+.+|.++..+|+.. +..
T Consensus 109 ~~v~l~~~-~~~~lG~~~~~~~~~~~~~gv~V~~V~~~s~A~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~~-~~~ 186 (196)
T 1p1d_A 109 FHVKLPKK-HSVELGITISSPSSRKPGDPLVISDIKKGSVAHRTGTLELGDKLLAIDNIRLDSCSMEDAVQILQQC-EDL 186 (196)
T ss_dssp EEEEECCC-SSCCCCCEEECSCSSSTTCCCEEEECCSSSHHHHTSCCCTTCEEEEETTEEGGGCCHHHHHHHHHHC-TTC
T ss_pred EEEEecCC-CCCCcCEEEECCCCCCCCCCEEEEEECCCCcHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC-CCE
Confidence 44555543 23678999876532 3589999999999999999 999999999999999777799999999988 555
Q ss_pred EEEEEEeCC
Q psy10428 86 KLLVVDVAS 94 (309)
Q Consensus 86 vllvv~r~~ 94 (309)
+.+.+.|++
T Consensus 187 v~l~v~R~~ 195 (196)
T 1p1d_A 187 VKLKIRKDE 195 (196)
T ss_dssp EEEEEECCC
T ss_pred EEEEEEeCC
Confidence 556666653
No 171
>3suz_A Amyloid beta A4 precursor protein-binding family 2; APP binding; 2.70A {Rattus norvegicus} PDB: 1u3b_A 1u39_A 1x45_A 1u37_A 1u38_A 2yt8_A
Probab=98.65 E-value=2.2e-08 Score=97.08 Aligned_cols=87 Identities=16% Similarity=0.164 Sum_probs=69.0
Q ss_pred CceEEEEEeeCCCCcceeEEEeccCC---CCCeEEEEeCCCCHHHHcC-CCCCCEEEEECCEEcCCCCHHHHHHHHHhCC
Q psy10428 7 PVVRLCHILKWTDFDGYGFNLHGEKG---KTGQYIGKVDEGSPAEAAG-LKEGDHIIEVNSVNICNENHNQVVQRIKAVP 82 (309)
Q Consensus 7 ~~pR~v~L~K~~~~~G~GFsl~ggk~---~~Gi~V~~V~pgSpA~~AG-Lq~GD~Il~VNG~~V~~~sh~dvv~~Lk~s~ 82 (309)
...|.+.+.|.+ ..+|||.|.+... ..+++|..|.+||||+++| |+.||+|++|||.++.+.++.+++.+|+...
T Consensus 203 ~~~~~V~i~k~~-ge~lG~~i~~~~~g~~~~g~~V~~V~~gspA~~aG~L~~GD~Il~VnG~~v~~~~~~~~~~~l~~~~ 281 (388)
T 3suz_A 203 ENCKELQLEKHK-GEILGVVVVESGWGSILPTVILANMMNGGPAARSGKLSIGDQIMSINGTSLVGLPLATCQGIIKGLK 281 (388)
T ss_dssp SCCEEEEECCCS-SCCCCCCCBCC---CCSCCCBCCCCCCSSHHHHTCCCCTTCEEEEETTEECSSCCSTTHHHHTTTCT
T ss_pred ccceEEEEECCC-CCceeEEEEecCCCCcCCCEEEEeeCCCCHHHHcCCCCCCCEEEEECCEEccCCCHHHHHHHHHhcc
Confidence 456888998863 3799999887431 2468999999999999999 9999999999999998888899999998763
Q ss_pred -CCeEEEEEEeCC
Q psy10428 83 -DETKLLVVDVAS 94 (309)
Q Consensus 83 -~~vvllvv~r~~ 94 (309)
+..+.+.+.+.+
T Consensus 282 ~~~~v~l~v~r~~ 294 (388)
T 3suz_A 282 NQTQVKLNIVSCP 294 (388)
T ss_dssp TCSCEEEEEEECC
T ss_pred CCCcccccccccc
Confidence 333455555543
No 172
>2zpm_A Regulator of sigma E protease; metalloproteinase, membrane protein, PDZ domain, hydrolase, inner membrane, membrane, metal-binding; HET: MLY MSE; 0.98A {Escherichia coli} PDB: 3id2_A 3id3_A 3id4_A
Probab=98.61 E-value=1.7e-07 Score=71.61 Aligned_cols=61 Identities=21% Similarity=0.347 Sum_probs=50.8
Q ss_pred CeEEEEeCCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCCeEEEEEEeCCeee
Q psy10428 35 GQYIGKVDEGSPAEAAGLKEGDHIIEVNSVNICNENHNQVVQRIKAVPDETKLLVVDVASEEY 97 (309)
Q Consensus 35 Gi~V~~V~pgSpA~~AGLq~GD~Il~VNG~~V~~~sh~dvv~~Lk~s~~~vvllvv~r~~~~~ 97 (309)
+++|..|.++|||+++||+.||+|++|||..+ .+|.++...+....+..+.+.+.|++...
T Consensus 5 ~~~V~~v~~~spA~~aGl~~GD~I~~ing~~v--~~~~~~~~~l~~~~g~~v~l~v~R~g~~~ 65 (91)
T 2zpm_A 5 EPVLENVQPNSAASXAGLQAGDRIVXVDGQPL--TQWVTFVMLVRDNPGXSLALEIERQGSPL 65 (91)
T ss_dssp -CBCSEECTTSHHHHTTCCTTCEEEEETTEEC--CCHHHHHHHHHHCTTCCEEEEEEETTEEE
T ss_pred CeEEEEECCCChHHhcCCCCCCEEEEECCeEc--CCHHHHHHHHhcCCCCeEEEEEEECCeEE
Confidence 35788999999999999999999999999999 78999999988765555566777776543
No 173
>2i6v_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type 2 secretion system, protein transport, membrane protein; 1.63A {Vibrio cholerae} SCOP: b.36.1.5
Probab=98.59 E-value=1.9e-07 Score=71.36 Aligned_cols=61 Identities=16% Similarity=0.277 Sum_probs=50.4
Q ss_pred CeEEEEeCCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHhC-CCCeEEEEEEeCCeee
Q psy10428 35 GQYIGKVDEGSPAEAAGLKEGDHIIEVNSVNICNENHNQVVQRIKAV-PDETKLLVVDVASEEY 97 (309)
Q Consensus 35 Gi~V~~V~pgSpA~~AGLq~GD~Il~VNG~~V~~~sh~dvv~~Lk~s-~~~vvllvv~r~~~~~ 97 (309)
|+.|..+.++|+|+++||++||+|++|||.++ .+|.++..++... .+..+.+.+.|++...
T Consensus 20 G~~V~~~~~~s~A~~aGl~~GD~I~~ing~~v--~~~~d~~~~~~~~~~g~~v~l~v~R~g~~~ 81 (87)
T 2i6v_A 20 GYRVSPGKDPVLFESIGLQDGDMAVALNGLDL--TDPNVMNTLFQSMNEMTEMSLTVERDGQQH 81 (87)
T ss_dssp EEEEEECSCHHHHHHTTCCTTCEEEEETTEET--TCHHHHHHHHHTGGGCSEEEEEEEETTEEE
T ss_pred EEEEEeCCCCCHHHHCCCCCCCEEEEECCEEC--CCHHHHHHHHHhcCCCCEEEEEEEECCEEE
Confidence 67788888999999999999999999999999 8999998888754 3555567777776543
No 174
>2l97_A HTRA, putative serine protease; HTRA-PDZ, protein binding; NMR {Streptococcus pneumoniae}
Probab=98.58 E-value=3.9e-07 Score=75.50 Aligned_cols=60 Identities=18% Similarity=0.231 Sum_probs=51.9
Q ss_pred CCeEEEEeCCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHhC-CCCeEEEEEEeCCee
Q psy10428 34 TGQYIGKVDEGSPAEAAGLKEGDHIIEVNSVNICNENHNQVVQRIKAV-PDETKLLVVDVASEE 96 (309)
Q Consensus 34 ~Gi~V~~V~pgSpA~~AGLq~GD~Il~VNG~~V~~~sh~dvv~~Lk~s-~~~vvllvv~r~~~~ 96 (309)
.|++|..|.++|||+ +||+.||+|++|||..+ .++.++..++... .+..+.+.+.|++..
T Consensus 57 ~g~~V~~V~~~spA~-aGL~~GD~I~~inG~~v--~~~~~l~~~l~~~~~g~~v~l~v~R~g~~ 117 (134)
T 2l97_A 57 SGVIVRSVQSNMPAN-GHLEKYDVITKVDDKEI--ASSTDLQSALYNHSIGDTIKITYYRNGKE 117 (134)
T ss_dssp SCEEEEECSTTSGGG-TTSCSSCEEEEETTEEC--CCHHHHHHHHHHSSTTCEEEEEEEETTEE
T ss_pred CCEEEEEECCCCchH-HCCCCCCEEEEECCEEc--CCHHHHHHHHHhCCCCCEEEEEEEECCEE
Confidence 589999999999999 99999999999999999 8899999888776 455666777777654
No 175
>3i18_A LMO2051 protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 1.70A {Listeria monocytogenes} PDB: 2kjk_A 3i1e_A
Probab=98.57 E-value=3.3e-07 Score=71.92 Aligned_cols=62 Identities=19% Similarity=0.303 Sum_probs=52.6
Q ss_pred CCeEEEEeCCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHhC-CCCeEEEEEEeCCeeee
Q psy10428 34 TGQYIGKVDEGSPAEAAGLKEGDHIIEVNSVNICNENHNQVVQRIKAV-PDETKLLVVDVASEEYF 98 (309)
Q Consensus 34 ~Gi~V~~V~pgSpA~~AGLq~GD~Il~VNG~~V~~~sh~dvv~~Lk~s-~~~vvllvv~r~~~~~~ 98 (309)
.|++|..|.++|||+. ||++||+|++|||..+ .+|.++..+|... .+..+.+.+.|++....
T Consensus 7 ~Gv~V~~V~~~spA~~-GL~~GD~I~~Ing~~v--~~~~dl~~~l~~~~~g~~v~l~v~R~g~~~~ 69 (100)
T 3i18_A 7 DGVYVMSVKDDVPAAD-VLHAGDLITEIDGNAF--KSSQEFIDYIHSKKVGDTVKINYKHGDKNEQ 69 (100)
T ss_dssp CCEEEEEECTTSGGGG-TCCTTCEEEEETTBCC--SSHHHHHHHHHTSCTTCEEEEEEEETTEEEE
T ss_pred CCEEEEEeCCCCchHH-CCCCCCEEEEECCEEC--CCHHHHHHHHHhCCCCCEEEEEEEECCEEEE
Confidence 5899999999999995 9999999999999999 8899999999874 45666677778766543
No 176
>2pzd_A Serine protease HTRA2; PDZ domain, apoptosis, mitochondria, peptid module, hydrolase; 2.75A {Homo sapiens} SCOP: b.36.1.4
Probab=98.54 E-value=5.4e-07 Score=71.75 Aligned_cols=61 Identities=28% Similarity=0.437 Sum_probs=51.1
Q ss_pred CCCeEEEEeCCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCCeEEEEEEeCCeee
Q psy10428 33 KTGQYIGKVDEGSPAEAAGLKEGDHIIEVNSVNICNENHNQVVQRIKAVPDETKLLVVDVASEEY 97 (309)
Q Consensus 33 ~~Gi~V~~V~pgSpA~~AGLq~GD~Il~VNG~~V~~~sh~dvv~~Lk~s~~~vvllvv~r~~~~~ 97 (309)
..|++|..|.++|||+++||++||+|++|||..+ .++.++..++.. + ..+.+.+.|++...
T Consensus 34 ~~gv~V~~V~~~spA~~aGl~~GD~I~~ing~~v--~~~~~~~~~l~~-~-~~v~l~v~R~g~~~ 94 (113)
T 2pzd_A 34 QHGVLIHKVILGSPAHRAGLRPGDVILAIGEQMV--QNAEDVYEAVRT-Q-SQLAVQIRRGRETL 94 (113)
T ss_dssp SSCEEEEEEBTTSHHHHHTCCTTCEEEEETTEEC--CSHHHHHHHHHH-C-SSEEEEEEETTEEE
T ss_pred CCCeEEEEeCCCChHHHcCCCCCCEEEEECCEEC--CCHHHHHHHHhC-C-CeEEEEEEECCEEE
Confidence 3589999999999999999999999999999999 688999988877 3 44456667776544
No 177
>2kl1_A YLBL protein; structure genomics, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; NMR {Geobacillus thermodenitrificans}
Probab=98.50 E-value=3.2e-07 Score=71.42 Aligned_cols=61 Identities=20% Similarity=0.312 Sum_probs=51.7
Q ss_pred CCeEEEEeCCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHhC-CCCeEEEEEEeCCeee
Q psy10428 34 TGQYIGKVDEGSPAEAAGLKEGDHIIEVNSVNICNENHNQVVQRIKAV-PDETKLLVVDVASEEY 97 (309)
Q Consensus 34 ~Gi~V~~V~pgSpA~~AGLq~GD~Il~VNG~~V~~~sh~dvv~~Lk~s-~~~vvllvv~r~~~~~ 97 (309)
.|++|..|.++|||++ ||++||+|++|||.++ .++.++..+|... .+..+.+.+.|++...
T Consensus 5 ~Gv~V~~V~~~spA~~-GL~~GD~Il~InG~~v--~~~~~l~~~l~~~~~g~~v~l~v~R~g~~~ 66 (94)
T 2kl1_A 5 KGVYVMSVLPNMPAAG-RLEAGDRIAAIDGQPI--NTSEQIVSYVREKQAGDRVRVTFIRDRKQH 66 (94)
T ss_dssp CCEECCCCCTTSTTBT-TBCTTCEEEEETTBCC--CCHHHHHHHHHHSCTTCCEEEEEEETTEEE
T ss_pred CcEEEEEECCCChHHh-CCCCCCEEEEECCEEC--CCHHHHHHHHHhCCCCCEEEEEEEECCEEE
Confidence 4789999999999999 9999999999999999 7889999999876 4556667777776543
No 178
>2kjp_A Uncharacterized protein YLBL; mixed alpha-beta protein, cell membrane, hydrolase, membrane, protease, serine protease, transmembrane; NMR {Bacillus subtilis}
Probab=98.49 E-value=7.1e-08 Score=75.02 Aligned_cols=59 Identities=24% Similarity=0.426 Sum_probs=50.5
Q ss_pred CeEEEEeCCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHhC-CCCeEEEEEEeCCee
Q psy10428 35 GQYIGKVDEGSPAEAAGLKEGDHIIEVNSVNICNENHNQVVQRIKAV-PDETKLLVVDVASEE 96 (309)
Q Consensus 35 Gi~V~~V~pgSpA~~AGLq~GD~Il~VNG~~V~~~sh~dvv~~Lk~s-~~~vvllvv~r~~~~ 96 (309)
|++|..|.++|||++ ||++||+|++|||.++ .++.++..+|... .+..+.+.+.|++..
T Consensus 2 Gv~V~~V~~~spA~~-GL~~GD~I~~InG~~v--~~~~~l~~~l~~~~~g~~v~l~v~R~g~~ 61 (91)
T 2kjp_A 2 GIYASSVVENMPAKG-KIEVGDKIISADGKNY--QSAEKLIDYISSKKAGDKVTLKIEREEKE 61 (91)
T ss_dssp CSSCCCCCCSSCCSS-CCCSSCEEEEETTBCC--SSHHHHHHHHSSCCSSCEECEEEESSSCE
T ss_pred ceEEEEECCCChHHH-cCCCCCEEEEECCEEC--CCHHHHHHHHHcCCCCCEEEEEEEECCEE
Confidence 678899999999999 9999999999999999 7889999999876 456666777776644
No 179
>2p3w_A Probable serine protease HTRA3; PDZ domain, phage derived high affinity ligand, protein BIND; 1.70A {Homo sapiens}
Probab=98.43 E-value=1.6e-06 Score=68.92 Aligned_cols=60 Identities=23% Similarity=0.495 Sum_probs=49.8
Q ss_pred CCeEEEEeCCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCCeEEEEEEeCCeee
Q psy10428 34 TGQYIGKVDEGSPAEAAGLKEGDHIIEVNSVNICNENHNQVVQRIKAVPDETKLLVVDVASEEY 97 (309)
Q Consensus 34 ~Gi~V~~V~pgSpA~~AGLq~GD~Il~VNG~~V~~~sh~dvv~~Lk~s~~~vvllvv~r~~~~~ 97 (309)
.|++|..|.++|||+++||++||+|++|||..+ .++.++...+.. +. .+.+.+.|++...
T Consensus 35 ~gv~V~~V~~~spA~~aGl~~GD~I~~ing~~v--~~~~~~~~~l~~-g~-~v~l~v~R~g~~~ 94 (112)
T 2p3w_A 35 SGIYVQEVAPNSPSQRGGIQDGDIIVKVNGRPL--VDSSELQEAVLT-ES-PLLLEVRRGNDDL 94 (112)
T ss_dssp SSEEEEEECTTSHHHHHTCCTTCEEEEETTEEC--CSHHHHHHHHHH-CS-SEEEEEEETTEEE
T ss_pred CCeEEEEECCCChHHHCCCCCCCEEEEECCEEC--CCHHHHHHHHhC-CC-eEEEEEEECCEEE
Confidence 589999999999999999999999999999999 789999888853 33 4456667766543
No 180
>1fc6_A Photosystem II D1 protease; D1 C-terminal processing protease, serine protease, serine- lysine catalytic DYAD, PDZ domain, photosynthesis; 1.80A {Scenedesmus obliquus} SCOP: b.36.1.3 c.14.1.2 PDB: 1fc9_A 1fc7_A 1fcf_A
Probab=98.42 E-value=1.1e-06 Score=84.75 Aligned_cols=77 Identities=19% Similarity=0.312 Sum_probs=63.1
Q ss_pred CCcceeEEEecc-CCCCCeEEEEeCCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCCeEEEEEEeCCe
Q psy10428 19 DFDGYGFNLHGE-KGKTGQYIGKVDEGSPAEAAGLKEGDHIIEVNSVNICNENHNQVVQRIKAVPDETKLLVVDVASE 95 (309)
Q Consensus 19 ~~~G~GFsl~gg-k~~~Gi~V~~V~pgSpA~~AGLq~GD~Il~VNG~~V~~~sh~dvv~~Lk~s~~~vvllvv~r~~~ 95 (309)
.+.|+|+.+... ....+++|..|.++|||+++||++||+|++|||+++.+.+..++..+|+...+..+.+.+.|.+.
T Consensus 83 ~~~giG~~~~~~~~~~~~~~V~~v~~~spA~~aGl~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~r~g~ 160 (388)
T 1fc6_A 83 SVTGVGLEITYDGGSGKDVVVLTPAPGGPAEKAGARAGDVIVTVDGTAVKGMSLYDVSDLLQGEADSQVEVVLHAPGA 160 (388)
T ss_dssp SCBBCSEEEEECTTCSSCEEEEEECTTSHHHHTTCCTTCEEEEETTEECTTCCHHHHHHHHCBSTTCEEEEEEEETTE
T ss_pred ceEEEEEEEEEeecCCCcEEEEEeCCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHhcCCCCEEEEEEEeCCC
Confidence 356889988754 22358999999999999999999999999999999987777889888876656666677777665
No 181
>2i4s_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type 2 secretion system, protein transport, membrane protein; 1.92A {Vibrio cholerae} SCOP: b.36.1.5
Probab=98.42 E-value=8.3e-07 Score=70.22 Aligned_cols=61 Identities=16% Similarity=0.256 Sum_probs=49.0
Q ss_pred CeEEEEeCCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHh-CCCCeEEEEEEeCCeee
Q psy10428 35 GQYIGKVDEGSPAEAAGLKEGDHIIEVNSVNICNENHNQVVQRIKA-VPDETKLLVVDVASEEY 97 (309)
Q Consensus 35 Gi~V~~V~pgSpA~~AGLq~GD~Il~VNG~~V~~~sh~dvv~~Lk~-s~~~vvllvv~r~~~~~ 97 (309)
|+.|..+.++|+|+++||++||+|++|||.++ .+|.++..++.. ..+..+.+.+.|++...
T Consensus 38 G~~V~~~~pas~A~~aGl~~GDvI~~ing~~v--~~~~d~~~~~~~~~~g~~v~l~v~R~g~~~ 99 (105)
T 2i4s_A 38 GYRVSPGKDPVLFESIGLQDGDMAVALNGLDL--TDPNVMNTLFQSMNEMTEMSLTVERDGQQH 99 (105)
T ss_dssp EEEEEECSCTHHHHHHTCCTTCEEEEETTEET--TSTTHHHHHHHHHTTCSEEEEEEEETTEEE
T ss_pred EEEEecCCCCCHHHHcCCCCCCEEEEECCEEC--CCHHHHHHHHHhcCCCCeEEEEEEECCEEE
Confidence 56677888888999999999999999999999 788888888765 34555567777776543
No 182
>1y8t_A Hypothetical protein RV0983; serine protease, structural genomics, PSI, protein structure initiative; 2.00A {Mycobacterium tuberculosis} SCOP: b.36.1.4 b.47.1.1 PDB: 2z9i_A
Probab=98.37 E-value=1.9e-06 Score=80.71 Aligned_cols=73 Identities=22% Similarity=0.355 Sum_probs=57.6
Q ss_pred ceeEEEeccCCCCCeEEEEeCCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHhC-CCCeEEEEEEe-CCee
Q psy10428 22 GYGFNLHGEKGKTGQYIGKVDEGSPAEAAGLKEGDHIIEVNSVNICNENHNQVVQRIKAV-PDETKLLVVDV-ASEE 96 (309)
Q Consensus 22 G~GFsl~ggk~~~Gi~V~~V~pgSpA~~AGLq~GD~Il~VNG~~V~~~sh~dvv~~Lk~s-~~~vvllvv~r-~~~~ 96 (309)
.+|+.+.......+++|..|.++|||+++||+.||+|++|||..+ .++.++..++... .+..+.+.+.| ++..
T Consensus 230 ~lGi~~~~~~~~~g~~V~~v~~~spA~~aGl~~GD~I~~ing~~v--~~~~~l~~~l~~~~~g~~v~l~v~R~~g~~ 304 (324)
T 1y8t_A 230 SLGVQVTNDKDTLGAKIVEVVAGGAAANAGVPKGVVVTKVDDRPI--NSADALVAAVRSKAPGATVALTFQDPSGGS 304 (324)
T ss_dssp ECCEEEESCSSSSSEEEEEECTTSTTTTTTCCTTCEEEEETTEEC--CSHHHHHHHHHTSCTTCEEEEEEECSSCCE
T ss_pred ccceEeeeccCCCceEEEEECCCChHHHcCCCCCCEEEEECCEEC--CCHHHHHHHHHhcCCCCEEEEEEEECCCCE
Confidence 455555433234689999999999999999999999999999999 8899999888763 45566677777 6644
No 183
>3suz_A Amyloid beta A4 precursor protein-binding family 2; APP binding; 2.70A {Rattus norvegicus} PDB: 1u3b_A 1u39_A 1x45_A 1u37_A 1u38_A 2yt8_A
Probab=98.32 E-value=7.3e-08 Score=93.36 Aligned_cols=65 Identities=25% Similarity=0.431 Sum_probs=0.0
Q ss_pred cceeEEEeccCCCCCeEEEEeCCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCCeEEEEEE
Q psy10428 21 DGYGFNLHGEKGKTGQYIGKVDEGSPAEAAGLKEGDHIIEVNSVNICNENHNQVVQRIKAVPDETKLLVVD 91 (309)
Q Consensus 21 ~G~GFsl~ggk~~~Gi~V~~V~pgSpA~~AGLq~GD~Il~VNG~~V~~~sh~dvv~~Lk~s~~~vvllvv~ 91 (309)
.+|||.+.++ +|..|.++|+|+++||++||+|++|||.+|.+.+|++++.+|+..++.+.+.++.
T Consensus 308 ~~lG~~i~~g------~I~~V~~gs~A~~aGL~~GD~Il~VNg~~v~~~s~~~~~~~l~~~~~~v~L~V~p 372 (388)
T 3suz_A 308 YQLGFSVQNG------IICSLMRGGIAERGGVRVGHRIIEINGQSVVATAHEKIVQALSNSVGEIHMKTMP 372 (388)
T ss_dssp -----------------------------------------------------------------------
T ss_pred CccceEEecC------EEEEeecCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEEEEEe
Confidence 5688876643 8999999999999999999999999999998889999999999887666555443
No 184
>3rle_A Golgi reassembly-stacking protein 2; PDZ, tether, golgin, membrane protein; 1.65A {Homo sapiens} PDB: 4edj_A
Probab=98.28 E-value=2.6e-06 Score=75.34 Aligned_cols=71 Identities=21% Similarity=0.238 Sum_probs=56.0
Q ss_pred cceeEEEecc----CCCCCeEEEEeCCCCHHHHcCCCC-CCEEEEECCEEcCCCCHHHHHHHHHhCCCCeEEEEEEeCC
Q psy10428 21 DGYGFNLHGE----KGKTGQYIGKVDEGSPAEAAGLKE-GDHIIEVNSVNICNENHNQVVQRIKAVPDETKLLVVDVAS 94 (309)
Q Consensus 21 ~G~GFsl~gg----k~~~Gi~V~~V~pgSpA~~AGLq~-GD~Il~VNG~~V~~~sh~dvv~~Lk~s~~~vvllvv~r~~ 94 (309)
..+||.+... ....|++|..|.++|||+++||++ ||+|++|||. + .++.++..+|+...+..+.+.+.|.+
T Consensus 95 ~~lGi~~~~~~~~~~~~~Gv~V~~V~~~spA~~aGl~~~GD~I~~ing~-v--~~~~~l~~~l~~~~g~~v~l~v~r~~ 170 (209)
T 3rle_A 95 GLLGVSIRFCSFDGANENVWHVLEVESNSPAALAGLRPHSDYIIGADTV-M--NESEDLFSLIETHEAKPLKLYVYNTD 170 (209)
T ss_dssp SSSCEEEEEEECTTGGGSCEEEEEECTTSHHHHHTCCTTTEEEEEESSC-C--CSSSCHHHHHHHTTTSCEEEEEEETT
T ss_pred CccceEEeecChhHccccceEEEEeCCCChHHHCCCCCCCCEEEECCCE-e--CCHHHHHHHHHhCCCCeEEEEEEECC
Confidence 3578877632 122589999999999999999999 9999999997 7 78888999998875555566666644
No 185
>3stj_A Protease DEGQ; serine protease, PDZ domain, protease, chaperone, DEGP, DEGQ hydrolase; 2.60A {Escherichia coli}
Probab=98.28 E-value=3.4e-06 Score=80.42 Aligned_cols=64 Identities=23% Similarity=0.331 Sum_probs=55.4
Q ss_pred CCeEEEEeCCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHhC-CCCeEEEEEEeCCeeeeE
Q psy10428 34 TGQYIGKVDEGSPAEAAGLKEGDHIIEVNSVNICNENHNQVVQRIKAV-PDETKLLVVDVASEEYFK 99 (309)
Q Consensus 34 ~Gi~V~~V~pgSpA~~AGLq~GD~Il~VNG~~V~~~sh~dvv~~Lk~s-~~~vvllvv~r~~~~~~~ 99 (309)
.|++|..|.++|||+++||++||+|++|||+.| .++.++..+|... .+..+.+.+.|++.....
T Consensus 263 ~G~~V~~V~~~spA~~aGL~~GDvI~~ing~~v--~~~~~l~~~l~~~~~g~~v~l~v~R~g~~~~~ 327 (345)
T 3stj_A 263 RGAFVSEVLPGSGSAKAGVKAGDIITSLNGKPL--NSFAELRSRIATTEPGTKVKLGLLRNGKPLEV 327 (345)
T ss_dssp SSEEEEEECTTSHHHHHTCCTTCEECEETTEEC--SCHHHHHHHHHTSCTTCEEEEEEEETTEEEEE
T ss_pred ceEEEEEeccCChHHHcCCCCCCEEEEECCEEC--CCHHHHHHHHHhcCCCCEEEEEEEECCEEEEE
Confidence 588999999999999999999999999999999 7999999999774 566667788888765543
No 186
>1w9e_A Syntenin 1; cell adhesion, adhesion/complex, PDZ domain, scaffolding protein signaling protein; 1.56A {Homo sapiens} SCOP: b.36.1.1 b.36.1.1 PDB: 1n99_A 1v1t_A 1obz_A 1w9o_A 1w9q_A 1ybo_A
Probab=98.25 E-value=8.3e-06 Score=69.10 Aligned_cols=71 Identities=21% Similarity=0.246 Sum_probs=57.3
Q ss_pred ceEEEEEeeCCCCcceeEEEeccCCCCCeEEEEeCCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCCe
Q psy10428 8 VVRLCHILKWTDFDGYGFNLHGEKGKTGQYIGKVDEGSPAEAAGLKEGDHIIEVNSVNICNENHNQVVQRIKAVPDET 85 (309)
Q Consensus 8 ~pR~v~L~K~~~~~G~GFsl~ggk~~~Gi~V~~V~pgSpA~~AGLq~GD~Il~VNG~~V~~~sh~dvv~~Lk~s~~~v 85 (309)
..+.+.|.+. ....|||.+.. + +|..|.++|+|+++||+.||+|++|||.++.+..+..+...+...+..+
T Consensus 88 ~~~~v~l~~~-~~~~lG~~~~~-----g-~v~~v~~~s~a~~aGl~~GD~I~~ing~~v~~~~~~~v~~~v~r~g~~~ 158 (166)
T 1w9e_A 88 FERTITMHKD-STGHVGFIFKN-----G-KITSIVKDSSAARNGLLTEHNICEINGQNVIGLKDSQIADILSTSGTVV 158 (166)
T ss_dssp TCEEEEEECC-TTSCCSEEEET-----T-EEEEECTTSHHHHTTCCSSEEEEEETTEECTTCCHHHHHHHHHHSCSEE
T ss_pred CcEEEEEecC-CCCcEeEEEeC-----C-EEEEEccCCHHHHcCCCCCCEEEEECCEECCCCChHHHHHHHhhCCCEE
Confidence 4566666643 23678988872 4 8999999999999999999999999999999888888887777765433
No 187
>1te0_A Protease DEGS; two domains, serine protease, PDZ, alpha-beta protein, hydro; 2.20A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3gdv_A* 3gcn_A* 3gds_A* 3gdu_A* 3gco_A* 1sot_A 1soz_A 1vcw_A 2r3y_A
Probab=98.20 E-value=4.6e-06 Score=78.12 Aligned_cols=62 Identities=21% Similarity=0.318 Sum_probs=53.8
Q ss_pred CCeEEEEeCCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHh-CCCCeEEEEEEeCCeee
Q psy10428 34 TGQYIGKVDEGSPAEAAGLKEGDHIIEVNSVNICNENHNQVVQRIKA-VPDETKLLVVDVASEEY 97 (309)
Q Consensus 34 ~Gi~V~~V~pgSpA~~AGLq~GD~Il~VNG~~V~~~sh~dvv~~Lk~-s~~~vvllvv~r~~~~~ 97 (309)
.|++|..|.++|||+++||++||+|++|||+.+ .++.++..+|+. ..+..+.+.+.|++...
T Consensus 244 ~g~~V~~V~~~spA~~aGL~~GD~I~~ing~~v--~~~~~l~~~l~~~~~g~~v~l~v~R~g~~~ 306 (318)
T 1te0_A 244 QGIVVNEVSPDGPAANAGIQVNDLIISVDNKPA--ISALETMDQVAEIRPGSVIPVVVMRDDKQL 306 (318)
T ss_dssp CCEEEEEECTTSTTTTTCCCTTCCEEEETTEEC--CCHHHHHHHHHTSCTTCEEEEEEESSSCEE
T ss_pred CcEEEEEeCCCChHHHCCCCCCCEEEEECCEEc--CCHHHHHHHHHhcCCCCEEEEEEEECCEEE
Confidence 589999999999999999999999999999999 789999999986 45666677788876544
No 188
>4a8c_A Periplasmic PH-dependent serine endoprotease DEGQ; chaperone, hydrolase; 7.50A {Escherichia coli} PDB: 4a8a_A 4a8b_A 4a9g_A
Probab=98.20 E-value=9.1e-06 Score=79.63 Aligned_cols=63 Identities=30% Similarity=0.405 Sum_probs=54.3
Q ss_pred CCeEEEEeCCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCCeEEEEEEeCCeeeeE
Q psy10428 34 TGQYIGKVDEGSPAEAAGLKEGDHIIEVNSVNICNENHNQVVQRIKAVPDETKLLVVDVASEEYFK 99 (309)
Q Consensus 34 ~Gi~V~~V~pgSpA~~AGLq~GD~Il~VNG~~V~~~sh~dvv~~Lk~s~~~vvllvv~r~~~~~~~ 99 (309)
.|++|..|.++|||+++||++||+|++|||.++ .+|+++..+|+..++ .+.+.+.|++...+.
T Consensus 363 ~gv~V~~V~~~spA~~aGL~~GD~I~~vng~~v--~~~~~~~~~l~~~~~-~v~l~v~R~g~~~~~ 425 (436)
T 4a8c_A 363 KGIKIDEVVKGSPAAQAGLQKDDVIIGVNRDRV--NSIAEMRKVLAAKPA-IIALQIVRGNESIYL 425 (436)
T ss_pred CCEEEEEeCCCCHHHHcCCCCCCEEEEECCEEC--CCHHHHHHHHHhCCC-eEEEEEEECCEEEEE
Confidence 489999999999999999999999999999999 789999999988655 556677777765543
No 189
>3rle_A Golgi reassembly-stacking protein 2; PDZ, tether, golgin, membrane protein; 1.65A {Homo sapiens} PDB: 4edj_A
Probab=98.20 E-value=2.6e-06 Score=75.29 Aligned_cols=61 Identities=23% Similarity=0.383 Sum_probs=46.4
Q ss_pred CCCeEEEEeCCCCHHHHcCCCCC-CEEEEECCEEcCCCCHHHHHH-HHHhCCCCeEEEEEEeCCe
Q psy10428 33 KTGQYIGKVDEGSPAEAAGLKEG-DHIIEVNSVNICNENHNQVVQ-RIKAVPDETKLLVVDVASE 95 (309)
Q Consensus 33 ~~Gi~V~~V~pgSpA~~AGLq~G-D~Il~VNG~~V~~~sh~dvv~-~Lk~s~~~vvllvv~r~~~ 95 (309)
..|++|..|.++|||+++||+.| |+|++|||..+ .+|.++.. ++....+..+.+.+.|.+.
T Consensus 15 ~~G~~V~~V~~~SpA~~AGL~~G~D~I~~ing~~v--~~~~~~~~~~~~~~~g~~v~l~v~R~~~ 77 (209)
T 3rle_A 15 TEGYHVLRVQENSPGHRAGLEPFFDFIVSINGSRL--NKDNDTLKDLLKANVEKPVKMLIYSSKT 77 (209)
T ss_dssp SEEEEEEEECTTSHHHHTTCCTTTEEEEEETTEEC--CSSSSHHHHHHHHTTTSCEEEEEEETTT
T ss_pred CCEEEEEEECCCCHHHHCCCCcCCeEEEEECCEEC--cCHHHHHHHHHhcCCCCEEEEEEEecCC
Confidence 35799999999999999999999 99999999999 55555443 3444445555566666543
No 190
>1lcy_A HTRA2 serine protease; apoptosis, PDZ domain, caspase activation, binding, hydrolase; 2.00A {Homo sapiens} SCOP: b.36.1.4 b.47.1.1
Probab=98.15 E-value=8.4e-06 Score=76.71 Aligned_cols=61 Identities=28% Similarity=0.417 Sum_probs=52.0
Q ss_pred CCeEEEEeCCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCCeEEEEEEeCCeeee
Q psy10428 34 TGQYIGKVDEGSPAEAAGLKEGDHIIEVNSVNICNENHNQVVQRIKAVPDETKLLVVDVASEEYF 98 (309)
Q Consensus 34 ~Gi~V~~V~pgSpA~~AGLq~GD~Il~VNG~~V~~~sh~dvv~~Lk~s~~~vvllvv~r~~~~~~ 98 (309)
.|++|..|.++|||+++||++||+|++|||..| .++.++..+|+. + ..+.+.+.|++....
T Consensus 256 ~gv~V~~V~~~spA~~aGl~~GDvI~~ing~~v--~~~~~l~~~l~~-~-~~v~l~v~R~g~~~~ 316 (325)
T 1lcy_A 256 HGVLIHKVILGSPAHRAGLRPGDVILAIGEQMV--QNAEDVYEAVRT-Q-SQLAVQIRRGRETLT 316 (325)
T ss_dssp SCEEEEEECTTSHHHHHTCCTTCEEEEETTEEC--CSHHHHHHHHTT-C-SSEEEEEEETTEEEE
T ss_pred CCeEEEEeCcCChHHHCCCCCCCEEEEECCEEc--CCHHHHHHHHhC-C-CeEEEEEEECCEEEE
Confidence 589999999999999999999999999999999 889999998876 3 445567778776543
No 191
>3pv2_A DEGQ; trypsin fold, PDZ domain, chaperone protease, hydrolase; 2.15A {Legionella fallonii} PDB: 3pv3_A 3pv5_A 3pv4_A
Probab=98.12 E-value=9.4e-06 Score=80.04 Aligned_cols=62 Identities=19% Similarity=0.241 Sum_probs=52.8
Q ss_pred CCeEEEEeCCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCCeEEEEEEeCCeeee
Q psy10428 34 TGQYIGKVDEGSPAEAAGLKEGDHIIEVNSVNICNENHNQVVQRIKAVPDETKLLVVDVASEEYF 98 (309)
Q Consensus 34 ~Gi~V~~V~pgSpA~~AGLq~GD~Il~VNG~~V~~~sh~dvv~~Lk~s~~~vvllvv~r~~~~~~ 98 (309)
.|++|..|.++|||+++||++||+|++|||.++ .+++++..+|+.. +..+.+.+.|++...+
T Consensus 386 ~Gv~V~~V~~gspA~~aGL~~GD~I~~Vng~~v--~~~~~~~~~l~~~-~~~v~l~v~R~g~~~~ 447 (451)
T 3pv2_A 386 IGVQVVGASENSAGWRAGIRPGDIIISANKKPV--TDVKSLQTIAQEK-KKELLVQVLRGPGSMY 447 (451)
T ss_dssp EEEEEEEECTTSHHHHHTCCTTCEEEEETTEEC--CSHHHHHHHTTSS-CSCEEEEEEETTEEEE
T ss_pred CceEEEEECCCCHHHHcCCCCCCEEEEECCEEC--CCHHHHHHHHhcC-CCeEEEEEEECCEEEE
Confidence 378999999999999999999999999999999 8899999999875 4455667777776543
No 192
>2hga_A Conserved protein MTH1368; GFT structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: b.36.1.6
Probab=98.09 E-value=7.3e-06 Score=67.31 Aligned_cols=58 Identities=24% Similarity=0.240 Sum_probs=49.0
Q ss_pred CCeEEEEeCCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHh-CCCCeEEEEEEeCCe
Q psy10428 34 TGQYIGKVDEGSPAEAAGLKEGDHIIEVNSVNICNENHNQVVQRIKA-VPDETKLLVVDVASE 95 (309)
Q Consensus 34 ~Gi~V~~V~pgSpA~~AGLq~GD~Il~VNG~~V~~~sh~dvv~~Lk~-s~~~vvllvv~r~~~ 95 (309)
.|++|..|.+++||+++ |+.||+|++|||..+ .+|.++...+.. ..+..+.+.+ |++.
T Consensus 25 ~gv~V~~V~~~spA~~a-L~~GD~Il~InG~~v--~~~~dl~~~l~~~~~g~~v~l~V-R~g~ 83 (125)
T 2hga_A 25 DGVQIDSVVPGSPASKV-LTPGLVIESINGMPT--SNLTTYSAALKTISVGEVINITT-DQGT 83 (125)
T ss_dssp CCEEEEEECSSSGGGGT-SCTTCEEEEETTEEC--SSHHHHHHHHTTCCTTCEEEEEE-TTEE
T ss_pred CceEEEEECCCChHHHh-cCCCCEEEEECCEEc--CCHHHHHHHHHhcCCCCEEEEEE-ECCE
Confidence 58999999999999999 999999999999999 889999988875 3455556666 6554
No 193
>3k50_A Putative S41 protease; structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.00A {Bacteroides fragilis nctc 9343}
Probab=98.08 E-value=3.6e-06 Score=82.12 Aligned_cols=71 Identities=24% Similarity=0.286 Sum_probs=52.6
Q ss_pred CcceeEEEeccCCCC---CeEEEEeCCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCCeEEEEEEeCC
Q psy10428 20 FDGYGFNLHGEKGKT---GQYIGKVDEGSPAEAAGLKEGDHIIEVNSVNICNENHNQVVQRIKAVPDETKLLVVDVAS 94 (309)
Q Consensus 20 ~~G~GFsl~ggk~~~---Gi~V~~V~pgSpA~~AGLq~GD~Il~VNG~~V~~~sh~dvv~~Lk~s~~~vvllvv~r~~ 94 (309)
+.||||.+....+.. .++|..|.++|||+++||+.||+|++|||..|.+.. +..+++. .+..+.+.+.|.+
T Consensus 73 ~~G~~~~l~~~~~~~~~~~~~V~~V~~gsPA~~AGL~~GD~I~~InG~~v~~~~---~~~~l~~-~g~~v~l~v~R~g 146 (403)
T 3k50_A 73 SYGFDYTLYKVLDNDTAYNALISYVVPGSPAEEAGLQRGHWIMMMNGDYITKKV---ESELLQG-STRQLQIGVYKEV 146 (403)
T ss_dssp BCSEEEEEEECTTCSSCEEEEEEEECTTSHHHHTTCCTTCEEEEETTBCBCTTT---GGGGTSC-SCEEEEEEEEEEE
T ss_pred ccceEEEEEEcCCCCcceeEEEEEeCCCChHHHcCCCCCCEEEEECCEEccchh---HHHHhhC-CCCEEEEEEEeCC
Confidence 467888876543221 378999999999999999999999999999995543 5556655 5555556665543
No 194
>3pv2_A DEGQ; trypsin fold, PDZ domain, chaperone protease, hydrolase; 2.15A {Legionella fallonii} PDB: 3pv3_A 3pv5_A 3pv4_A
Probab=98.06 E-value=2e-05 Score=77.74 Aligned_cols=62 Identities=32% Similarity=0.474 Sum_probs=53.4
Q ss_pred CCeEEEEeCCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHh-CCCCeEEEEEEeCCeee
Q psy10428 34 TGQYIGKVDEGSPAEAAGLKEGDHIIEVNSVNICNENHNQVVQRIKA-VPDETKLLVVDVASEEY 97 (309)
Q Consensus 34 ~Gi~V~~V~pgSpA~~AGLq~GD~Il~VNG~~V~~~sh~dvv~~Lk~-s~~~vvllvv~r~~~~~ 97 (309)
.|++|..|.++|||+++||+.||+|++|||+.| .+|.++...+.. ..+..+.+.+.|++...
T Consensus 282 ~G~~V~~V~~~spA~~aGL~~GDvI~~vnG~~v--~~~~~l~~~l~~~~~g~~v~l~V~R~g~~~ 344 (451)
T 3pv2_A 282 QGALVSQVNPNSPAELAGLKAGDIITQINDTKI--TQATQVKTTISLLRVGSTVKIIVERDNKPL 344 (451)
T ss_dssp CCEEEEEECTTSHHHHHTCCTTCEEEEETTEEC--CSHHHHHHHHHTSCTTCEEEEEEEETTEEE
T ss_pred ceEEEEecCCCChHHHcCCCCCCEEEEECCEEc--CCHHHHHHHHHhcCCCCEEEEEEEECCEEE
Confidence 589999999999999999999999999999999 889999998876 34566667777876554
No 195
>4a8c_A Periplasmic PH-dependent serine endoprotease DEGQ; chaperone, hydrolase; 7.50A {Escherichia coli} PDB: 4a8a_A 4a8b_A 4a9g_A
Probab=98.02 E-value=2.4e-05 Score=76.61 Aligned_cols=62 Identities=24% Similarity=0.372 Sum_probs=52.3
Q ss_pred CCeEEEEeCCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHhC-CCCeEEEEEEeCCeee
Q psy10428 34 TGQYIGKVDEGSPAEAAGLKEGDHIIEVNSVNICNENHNQVVQRIKAV-PDETKLLVVDVASEEY 97 (309)
Q Consensus 34 ~Gi~V~~V~pgSpA~~AGLq~GD~Il~VNG~~V~~~sh~dvv~~Lk~s-~~~vvllvv~r~~~~~ 97 (309)
.|++|..|.++|||+++||+.||+|++|||+.+ .+|.++...+... .+..+.+.+.|++...
T Consensus 263 ~G~~V~~V~~~spA~~aGL~~GD~I~~vnG~~v--~~~~~l~~~l~~~~~g~~v~l~v~R~g~~~ 325 (436)
T 4a8c_A 263 RGAFVSEVLPGSGSAKAGVKAGDIITSLNGKPL--NSFAELRSRIATTEPGTKVKLGLLRNGKPL 325 (436)
T ss_pred cceEEEEECCCChHHHCCCCCCCEEEEECCEEC--CCHHHHHHHHHhcCCCCEEEEEEEECCEEE
Confidence 589999999999999999999999999999999 8899998888654 3555566777776554
No 196
>4fgm_A Aminopeptidase N family protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, peptidase_M61, PDZ; 2.39A {Idiomarina loihiensis L2TR}
Probab=98.00 E-value=1.7e-05 Score=80.95 Aligned_cols=72 Identities=21% Similarity=0.295 Sum_probs=56.1
Q ss_pred cceeEEEeccCCCCCeEEEEeCCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHh-CCCCeEEEEEEeCCeee
Q psy10428 21 DGYGFNLHGEKGKTGQYIGKVDEGSPAEAAGLKEGDHIIEVNSVNICNENHNQVVQRIKA-VPDETKLLVVDVASEEY 97 (309)
Q Consensus 21 ~G~GFsl~ggk~~~Gi~V~~V~pgSpA~~AGLq~GD~Il~VNG~~V~~~sh~dvv~~Lk~-s~~~vvllvv~r~~~~~ 97 (309)
.++|+.+... ..|++|..|.++|||+++||++||+|++|||..|. ..++..+|.. ..+..+.+.+.|++...
T Consensus 485 ~~lG~~~~~~--~~gv~V~~V~~~spA~~AGL~~GD~I~aInG~~v~---~~~l~~~l~~~~~g~~v~l~v~R~g~~~ 557 (597)
T 4fgm_A 485 VNFGAKYKAS--PQGLDVLNVYHDESAYHAGLSAGDKIIAIDHLQAT---EQSVKRILERYIPGDTVTIHAFRRDELM 557 (597)
T ss_dssp CCCSEEEEEE--TTEEEEEEECTTSHHHHHTCCTTCEEEEETTEECC---TTTHHHHHTTCCTTCEEEEEEEETTEEE
T ss_pred cccceEEecc--CCeEEEEEeCCCChHHHCCCCCCCEEEEECCEECC---HHHHHHHHHhcCCCCEEEEEEEECCEEE
Confidence 4688877644 23799999999999999999999999999999993 4566667765 34566677778876543
No 197
>3qo6_A Protease DO-like 1, chloroplastic; protease, HTRA, PH-sensor, hydrolase, photosynthesis; 2.50A {Arabidopsis thaliana}
Probab=97.97 E-value=1.5e-05 Score=75.72 Aligned_cols=62 Identities=21% Similarity=0.301 Sum_probs=53.1
Q ss_pred CCeEEEEeCCCCHHHHcCCCC-----------CCEEEEECCEEcCCCCHHHHHHHHHhC-CCCeEEEEEEeCCeee
Q psy10428 34 TGQYIGKVDEGSPAEAAGLKE-----------GDHIIEVNSVNICNENHNQVVQRIKAV-PDETKLLVVDVASEEY 97 (309)
Q Consensus 34 ~Gi~V~~V~pgSpA~~AGLq~-----------GD~Il~VNG~~V~~~sh~dvv~~Lk~s-~~~vvllvv~r~~~~~ 97 (309)
.|++|..|.++|||+++||+. ||+|++|||++| .++.++...|... .+..+.+.+.|++...
T Consensus 251 ~Gv~V~~V~~~spA~~AGl~~~~~~~~~~l~~GDvI~~ing~~v--~~~~dl~~~l~~~~~g~~v~l~v~R~g~~~ 324 (348)
T 3qo6_A 251 SGVLVLDAPPSGPAGKAGLQSTKRDGYGRLVLGDIITSVNGTKV--SNGSDLYRILDQCKVGDEVTVEVLRGDHKE 324 (348)
T ss_dssp SSEEEEECCSSSHHHHHTCCCCEECSSSCEECCCEECEETTBCC--SSSHHHHHHHTTCCTTCEEEEEEECSSSEE
T ss_pred ceEEEEEecCCChHHHcCCccccccccCCCCCCCEEEEECCEEe--CCHHHHHHHHHhCCCcCEEEEEEEECCEEE
Confidence 489999999999999999999 999999999999 7889999998653 4666677778876554
No 198
>2krg_A Na(+)/H(+) exchange regulatory cofactor NHE-RF1; acetylation, cell projection, disease mutation, membrane, phosphoprotein, polymorphism; NMR {Homo sapiens}
Probab=97.96 E-value=5.4e-06 Score=74.39 Aligned_cols=41 Identities=20% Similarity=0.332 Sum_probs=36.7
Q ss_pred ccccccccccHHHHHHHHhhhhccCCCc-cccccccccceeccc
Q psy10428 204 NQNNLNLNMSAKELRAKLASRKKYDPKK-DYLDIKKKYDISTNQ 246 (309)
Q Consensus 204 ~~~~~n~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 246 (309)
....|+|||+|||+|+++.+|| ++|+ +.||+.+||+|+++.
T Consensus 175 ~~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~d~~~~~~~~~~~ 216 (216)
T 2krg_A 175 SDPILDFNISLAMAKERAHQKR--SSKRAPQMDWSKKNELFSNL 216 (216)
T ss_dssp SSCCCCHHHHHHTTGGGTTCCC--CCCCCSCCCCSCCCCCSCCC
T ss_pred CCcccccChhHHHHHHHHHhcc--ccccCcccCHHHHHHHHhcC
Confidence 3488999999999999998877 7798 999999999999863
No 199
>1ky9_A Protease DO, DEGP, HTRA; protein quality control, serine protease, trypsin, chaperone, PDZ, ATP-independent, temperature-regulated, periplasm; 2.80A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3ou0_A 4a8d_A 3otp_A 3mh7_A 3mh4_A 3mh5_A* 3mh6_A* 3cs0_A 2zle_A
Probab=97.72 E-value=4.5e-06 Score=82.26 Aligned_cols=71 Identities=24% Similarity=0.410 Sum_probs=0.0
Q ss_pred eeEEEeccCCCCCeEEEEeCCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCCeEEEEEEeCCee
Q psy10428 23 YGFNLHGEKGKTGQYIGKVDEGSPAEAAGLKEGDHIIEVNSVNICNENHNQVVQRIKAVPDETKLLVVDVASEE 96 (309)
Q Consensus 23 ~GFsl~ggk~~~Gi~V~~V~pgSpA~~AGLq~GD~Il~VNG~~V~~~sh~dvv~~Lk~s~~~vvllvv~r~~~~ 96 (309)
+||.+.......|++|..|.++|||+++||++||+|++|||..+ .+++++..+|+...+ .+.+.+.|++..
T Consensus 372 ~G~~l~~~~~~~gv~V~~V~~gspA~~aGL~~GDiI~~vng~~v--~~~~~l~~~l~~~~~-~v~l~v~R~g~~ 442 (448)
T 1ky9_A 372 EGAEMSNKGKDQGVVVNNVKTGTPAAQIGLKKGDVIIGANQQAV--KNIAELRKVLDSKPS-VLALNIQRGDST 442 (448)
T ss_dssp --------------------------------------------------------------------------
T ss_pred cceEeeccCCCCeEEEEEecCCCHHHHcCCCCCCEEEEECCEEC--CCHHHHHHHHHcCCC-eEEEEEEECCEE
Confidence 36655322223578999999999999999999999999999999 688999999987655 445566665543
No 200
>3num_A Serine protease HTRA1; DEGP, hydrolase; 2.75A {Homo sapiens} PDB: 3nzi_A 2ytw_A 2joa_A
Probab=97.61 E-value=8.4e-06 Score=76.79 Aligned_cols=59 Identities=41% Similarity=0.556 Sum_probs=0.0
Q ss_pred CCeEEEEeCCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCCeEEEEEEeCCee
Q psy10428 34 TGQYIGKVDEGSPAEAAGLKEGDHIIEVNSVNICNENHNQVVQRIKAVPDETKLLVVDVASEE 96 (309)
Q Consensus 34 ~Gi~V~~V~pgSpA~~AGLq~GD~Il~VNG~~V~~~sh~dvv~~Lk~s~~~vvllvv~r~~~~ 96 (309)
.|++|..|.++|||+++||++||+|++|||..+ .++.++..+++. +..+.+.+.|++..
T Consensus 254 ~g~~V~~v~~~spA~~aGl~~GD~I~~ing~~v--~~~~~~~~~l~~--~~~v~l~v~R~g~~ 312 (332)
T 3num_A 254 SGAYIIEVIPDTPAEAGGLKENDVIISINGQSV--VSANDVSDVIKR--ESTLNMVVRRGNED 312 (332)
T ss_dssp ---------------------------------------------------------------
T ss_pred CceEEEEeccCCChHHcCCCCCCEEEEECCEEC--CCHHHHHHHHhC--CCeEEEEEEECCEE
Confidence 478999999999999999999999999999999 788888888865 33345556665543
No 201
>1ky9_A Protease DO, DEGP, HTRA; protein quality control, serine protease, trypsin, chaperone, PDZ, ATP-independent, temperature-regulated, periplasm; 2.80A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3ou0_A 4a8d_A 3otp_A 3mh7_A 3mh4_A 3mh5_A* 3mh6_A* 3cs0_A 2zle_A
Probab=97.33 E-value=4.2e-05 Score=75.33 Aligned_cols=61 Identities=21% Similarity=0.308 Sum_probs=49.8
Q ss_pred CCeEEEEeCCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHhC-CCCeEEEEEEeCCee
Q psy10428 34 TGQYIGKVDEGSPAEAAGLKEGDHIIEVNSVNICNENHNQVVQRIKAV-PDETKLLVVDVASEE 96 (309)
Q Consensus 34 ~Gi~V~~V~pgSpA~~AGLq~GD~Il~VNG~~V~~~sh~dvv~~Lk~s-~~~vvllvv~r~~~~ 96 (309)
.|++|..|.++|||+++||+.||+|++|||..+ .++.++..++... .+..+.+.+.|++..
T Consensus 286 ~G~~V~~V~~gspA~~AGL~~GDvI~~inG~~v--~~~~~l~~~l~~~~~g~~v~l~v~R~g~~ 347 (448)
T 1ky9_A 286 RGAFVSQVLPNSSAAKAGIKAGDVITSLNGKPI--SSFAALRAQVGTMPVGSKLTLGLLRDGKQ 347 (448)
T ss_dssp CSEECCCCTTCSSSTTTTCCTTCEECBSSSSBC--CSSHHHHHHTTSSBTTCCCEEEEESSSCE
T ss_pred CceEEEEeccCCHHHHcCCCCCCEEEEECCEEc--CCHHHHHHHHHhcCCCCEEEEEEEECCEE
Confidence 489999999999999999999999999999999 7788888888653 344445666776543
No 202
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=97.30 E-value=0.00036 Score=73.97 Aligned_cols=70 Identities=10% Similarity=0.119 Sum_probs=57.3
Q ss_pred CcceeEEEeccCCCCCeEEEEeCCC--------CHHHHcC--CCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCCeEEEE
Q psy10428 20 FDGYGFNLHGEKGKTGQYIGKVDEG--------SPAEAAG--LKEGDHIIEVNSVNICNENHNQVVQRIKAVPDETKLLV 89 (309)
Q Consensus 20 ~~G~GFsl~ggk~~~Gi~V~~V~pg--------SpA~~AG--Lq~GD~Il~VNG~~V~~~sh~dvv~~Lk~s~~~vvllv 89 (309)
+.|+|+.+... ..+++|..|.+| |||+++| |+ ||+|++|||+++.+. .++..+|+...+..+.+.
T Consensus 736 ~~g~G~~~~~~--~~~~~v~~v~~~~~~~~~~~spa~~ag~~l~-GD~I~~i~g~~~~~~--~~~~~~~~~~~g~~v~l~ 810 (1045)
T 1k32_A 736 SGRIACDFKLD--GDHYVVAKAYAGDYSNEGEKSPIFEYGIDPT-GYLIEDIDGETVGAG--SNIYRVLSEKAGTSARIR 810 (1045)
T ss_dssp CCBCSEEEEEE--TTEEEEEEECBSCTTSTTCBCGGGGGTCCCT-TCEEEEETTEECBTT--BCHHHHHHTTTTSEEEEE
T ss_pred cceecEEEEEe--CCEEEEEEecCCCcccccCCChHHHCCCCcC-CCEEEEECCEEccch--hhHHHhhcCCCCCEEEEE
Confidence 45888877653 247899999998 9999999 99 999999999999554 478888888777777788
Q ss_pred EEeCC
Q psy10428 90 VDVAS 94 (309)
Q Consensus 90 v~r~~ 94 (309)
+.|.+
T Consensus 811 v~r~~ 815 (1045)
T 1k32_A 811 LSGKG 815 (1045)
T ss_dssp EECSS
T ss_pred EECCC
Confidence 88765
No 203
>4fln_A Protease DO-like 2, chloroplastic; protease, DEG, PDZ, hydrolase; 2.80A {Arabidopsis thaliana}
Probab=96.53 E-value=0.0071 Score=61.05 Aligned_cols=67 Identities=21% Similarity=0.213 Sum_probs=49.1
Q ss_pred CCeEEEEeCCCCHHHHcCCCCCCEEEEECCEEcCCCC--------HHHHHHHHHhC-CCCeEEEEEEeCCeeeeEee
Q psy10428 34 TGQYIGKVDEGSPAEAAGLKEGDHIIEVNSVNICNEN--------HNQVVQRIKAV-PDETKLLVVDVASEEYFKSN 101 (309)
Q Consensus 34 ~Gi~V~~V~pgSpA~~AGLq~GD~Il~VNG~~V~~~s--------h~dvv~~Lk~s-~~~vvllvv~r~~~~~~~~~ 101 (309)
.|++|..|.++|||+++ |+.||+|++|||+.|.... ..++..++... .+..+.+.+.|++...-...
T Consensus 277 ~Gv~V~~V~~~spA~~a-l~~GDvI~~idg~~V~~~g~~~~~~~~~~~l~~~v~~~~~Gd~v~l~v~R~Gk~~~v~V 352 (539)
T 4fln_A 277 EGVLVRRVEPTSDASKV-LKEGDVIVSFDDLHVGCEGTVPFRSSERIAFRYLISQKFAGDIAEIGIIRAGEHKKVQV 352 (539)
T ss_dssp BCEEEEEECTTSGGGGT-CCTTCEEEEETTEECBSSSEEECSTTCEEETHHHHHTSCTTCEEEEEEEETTEEEEEEE
T ss_pred CceeeecccCCChHHhC-ccCCCEEEEECCEEeCcCCeeccccchhHHHHHHHHcCCCCCEEEEEEEECCEEEEEEE
Confidence 58999999999999876 9999999999999994321 11234455443 46677778888877654433
No 204
>4fln_A Protease DO-like 2, chloroplastic; protease, DEG, PDZ, hydrolase; 2.80A {Arabidopsis thaliana}
Probab=96.49 E-value=0.004 Score=62.83 Aligned_cols=56 Identities=11% Similarity=0.121 Sum_probs=49.9
Q ss_pred CCCeEEEEeCCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCCeEEEEE
Q psy10428 33 KTGQYIGKVDEGSPAEAAGLKEGDHIIEVNSVNICNENHNQVVQRIKAVPDETKLLVV 90 (309)
Q Consensus 33 ~~Gi~V~~V~pgSpA~~AGLq~GD~Il~VNG~~V~~~sh~dvv~~Lk~s~~~vvllvv 90 (309)
..+++|..|.++++|..+|++.||+|++|||++| .+..++.++|+++.+..+.+.+
T Consensus 414 ~~gVvvs~V~~~s~a~~~g~~~gdiI~~vNg~~V--~s~~~l~~~l~~~k~~~l~~~~ 469 (539)
T 4fln_A 414 EQIVILSQVLANEVNIGYEDMNNQQVLKFNGIPI--RNIHHLAHLIDMCKDKYLVFEF 469 (539)
T ss_dssp CCCEEEEEECCCGGGTTCSSCCSEEEEEETTEEC--CSHHHHHHHHHTCCSSEEEEEE
T ss_pred ceEEEEEEecCCchhhhcCCCCCCEEEeECCEEc--CCHHHHHHHHHHcCCCeEEEEE
Confidence 3579999999999999999999999999999999 8999999999999877654443
No 205
>2d10_E Ezrin-radixin-moesin binding phosphoprotein 50; protein-peptide complex, cell adhesion; 2.50A {Mus musculus}
Probab=91.11 E-value=0.077 Score=32.26 Aligned_cols=22 Identities=27% Similarity=0.436 Sum_probs=18.0
Q ss_pred ccCCCCc-cchhhhhhhhhhhcC
Q psy10428 288 KKYDPKK-DYLDIKKKYDIVQKL 309 (309)
Q Consensus 288 ~~~~~~~-~~~~~~~~~~~~~~~ 309 (309)
-|.++|+ .+||..||+||++-|
T Consensus 6 ~kR~~krap~MDw~kk~eifsn~ 28 (28)
T 2d10_E 6 QKRSSKRAPQMDWSKKNELFSNL 28 (28)
T ss_pred hccccccCCcccHHHHHHHHhcC
Confidence 5667777 789999999999754
No 206
>2d11_E Na(+)/H(+) exchange regulatory cofactor NHE-RF2; protein-peptide complex, cell adhesion; 2.81A {Mus musculus}
Probab=90.35 E-value=0.1 Score=31.78 Aligned_cols=22 Identities=18% Similarity=0.252 Sum_probs=17.9
Q ss_pred ccCCCCc-cchhhhhhhhhhhcC
Q psy10428 288 KKYDPKK-DYLDIKKKYDIVQKL 309 (309)
Q Consensus 288 ~~~~~~~-~~~~~~~~~~~~~~~ 309 (309)
-|.++|+ .+||..||+||++-|
T Consensus 6 ~kR~~krap~MDw~kk~eifsn~ 28 (28)
T 2d11_E 6 AMRVNKRAPQMDWNRKREIFSNF 28 (28)
T ss_pred hccccccCCcccHHHHHHHHhcC
Confidence 5667777 789999999999754
No 207
>3owt_C Regulatory protein SIR3; RCT domain, protein binding; 2.00A {Saccharomyces cerevisiae}
Probab=48.37 E-value=3.9 Score=23.99 Aligned_cols=9 Identities=56% Similarity=1.062 Sum_probs=7.1
Q ss_pred hhhhhhhhh
Q psy10428 298 DIKKKYDIV 306 (309)
Q Consensus 298 ~~~~~~~~~ 306 (309)
.|||||+||
T Consensus 16 klkkkyqii 24 (27)
T 3owt_C 16 KLKKKYQII 24 (27)
T ss_pred HHHhhheee
Confidence 378889887
No 208
>2do1_A Nuclear protein HCC-1; SAP domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.140.2.1
Probab=34.22 E-value=20 Score=24.96 Aligned_cols=20 Identities=20% Similarity=0.340 Sum_probs=16.1
Q ss_pred cccHHHHHHHHhhcccCCCCc
Q psy10428 274 NMSAKELRAKLASRKKYDPKK 294 (309)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~ 294 (309)
.||++|||+.|..|. .+.+.
T Consensus 12 klkV~eLK~~L~~rG-L~~~G 31 (55)
T 2do1_A 12 KLKLAELKQECLARG-LETKG 31 (55)
T ss_dssp TSCHHHHHHHHHHHT-CCCCS
T ss_pred HCcHHHHHHHHHHcC-CCCCC
Confidence 699999999998876 45544
No 209
>3dor_A Protein CT_858, CPAF; mature CPAF, dimer, transferase; 2.20A {Chlamydia trachomatis} PDB: 3dpm_A* 3dpn_A 3dja_A
Probab=33.81 E-value=54 Score=33.20 Aligned_cols=39 Identities=15% Similarity=0.324 Sum_probs=25.2
Q ss_pred eeEEEeccCCCCCeEEEEeCCCCHHHHcCCCCCCEEEEECCEEc
Q psy10428 23 YGFNLHGEKGKTGQYIGKVDEGSPAEAAGLKEGDHIIEVNSVNI 66 (309)
Q Consensus 23 ~GFsl~ggk~~~Gi~V~~V~pgSpA~~AGLq~GD~Il~VNG~~V 66 (309)
+||.+....+. .++|..+.... +++..||+|++|||+++
T Consensus 86 ~Pf~vki~iDG-~i~V~dv~~~~----s~I~vGdEIlsING~pv 124 (583)
T 3dor_A 86 LPYTVQKSSDG-RFYFVDIMTFS----SEIRVGDELLEVDGAPV 124 (583)
T ss_dssp CSEEEEECTTS-CEEEEEECSSC----CSSCTTCEEEEETTEEH
T ss_pred CCeEEEEEECC-cEEEEeccccc----cCCCCCCEEEEECCccH
Confidence 45655412222 36776653332 27999999999999998
No 210
>2ad6_B Methanol dehydrogenase subunit 2; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: a.137.2.1 PDB: 1g72_B* 2ad7_B* 2ad8_B* 4aah_B*
Probab=29.20 E-value=16 Score=26.43 Aligned_cols=21 Identities=33% Similarity=0.699 Sum_probs=16.3
Q ss_pred ccCCCCccchhhhhhhhhhhc
Q psy10428 288 KKYDPKKDYLDIKKKYDIVQK 308 (309)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~ 308 (309)
-|||||-+.-.|-|--+-|+.
T Consensus 26 sKYDPkHdp~EL~KQ~~si~a 46 (69)
T 2ad6_B 26 SKYDPKHDPVELNKQEESIKA 46 (69)
T ss_dssp STTCCCCCHHHHTHHHHHHHH
T ss_pred CcCCCCCCHHHHHHHHHHHHH
Confidence 489999998888877666653
No 211
>1w6s_B Methanol dehydrogenase subunit 2; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: a.137.2.1 PDB: 1h4j_B* 1h4i_B* 2d0v_B*
Probab=25.31 E-value=21 Score=26.19 Aligned_cols=20 Identities=40% Similarity=0.717 Sum_probs=15.7
Q ss_pred ccCCCCccchhhhhhhhhhh
Q psy10428 288 KKYDPKKDYLDIKKKYDIVQ 307 (309)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~ 307 (309)
-|||||-+.-.|-|--+-|+
T Consensus 26 sKYDPkHdp~EL~KQ~~si~ 45 (74)
T 1w6s_B 26 SKYDPKHDPKELNKQADSIK 45 (74)
T ss_dssp STTCCCCCHHHHTHHHHHHH
T ss_pred CcCCCCCCHHHHHHHHHHHH
Confidence 48999999888877666554
No 212
>1lrw_B Methanol dehydrogenase subunit 2; heavy subunits: 8-fold beta-propeller superbarrel, oxidoreductase; HET: PQQ; 2.50A {Paracoccus denitrificans} SCOP: a.137.2.1
Probab=22.14 E-value=26 Score=26.15 Aligned_cols=20 Identities=30% Similarity=0.579 Sum_probs=15.7
Q ss_pred ccCCCCccchhhhhhhhhhh
Q psy10428 288 KKYDPKKDYLDIKKKYDIVQ 307 (309)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~ 307 (309)
-|||||-+.-.|-|--+-|+
T Consensus 26 sKYDPkHdp~EL~KQ~~si~ 45 (83)
T 1lrw_B 26 SKYDPQHDPAELSKQGESLA 45 (83)
T ss_dssp STTCCCCCHHHHTHHHHHHH
T ss_pred CcCCCCCCHHHHHHHHHHHH
Confidence 48999999888877666554
No 213
>1zrj_A E1B-55KDA-associated protein 5 isoform C; SAP domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.140.2.1
Probab=20.35 E-value=48 Score=22.54 Aligned_cols=20 Identities=30% Similarity=0.521 Sum_probs=16.2
Q ss_pred cccHHHHHHHHhhcccCCCCc
Q psy10428 274 NMSAKELRAKLASRKKYDPKK 294 (309)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~ 294 (309)
.|+++|||+.|.+|. .+.+.
T Consensus 12 klkV~eLK~eLk~Rg-L~~~G 31 (50)
T 1zrj_A 12 RLKVNELREELQRRG-LDTRG 31 (50)
T ss_dssp GSCHHHHHHHHHHTT-CCCCS
T ss_pred HCcHHHHHHHHHHcC-CCCCC
Confidence 699999999999886 45543
Done!