RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10428
(309 letters)
>2eei_A PDZ domain-containing protein 1; regulatory factor, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 106
Score = 136 bits (344), Expect = 1e-40
Identities = 32/106 (30%), Positives = 54/106 (50%), Gaps = 2/106 (1%)
Query: 2 SEDKTPVVRLCHILKWTDFDGYGFNLHGEKGKTGQYIGKVDEGSPAEAAGLKEGDHIIEV 61
S + RLC+++K + YGF+L +GK G Y+ + A AG+ DH+IEV
Sbjct: 2 SSGSSGQPRLCYLVK--EGGSYGFSLKTVQGKKGVYMTDITPQGVAMRAGVLADDHLIEV 59
Query: 62 NSVNICNENHNQVVQRIKAVPDETKLLVVDVASEEYFKSNNITISS 107
N N+ + +H +VV+++K L+VD +++ SS
Sbjct: 60 NGENVEDASHEEVVEKVKKSGSRVMFLLVDKETDKRHVEQKSGPSS 105
>2jxo_A Ezrin-radixin-moesin-binding phosphoprotein 50; nherf-1, PDZ
domain, PDZ2, acetylation, cell projection, membrane,
polymorphism; NMR {Homo sapiens}
Length = 98
Score = 131 bits (331), Expect = 1e-38
Identities = 48/90 (53%), Positives = 60/90 (66%), Gaps = 2/90 (2%)
Query: 10 RLCHILKWTDFDGYGFNLHGEKGKTGQYIGKVDEGSPAEAAGLKEGDHIIEVNSVNICNE 69
RLC + K GYGFNLH +K K GQ+I VD SPAEA+GL+ D I+EVN V + +
Sbjct: 11 RLCTMKKGPS--GYGFNLHSDKSKPGQFIRSVDPDSPAEASGLRAQDRIVEVNGVCMEGK 68
Query: 70 NHNQVVQRIKAVPDETKLLVVDVASEEYFK 99
H VV I+A DETKLLVVD ++E+FK
Sbjct: 69 QHGDVVSAIRAGGDETKLLVVDRETDEFFK 98
>2krg_A Na(+)/H(+) exchange regulatory cofactor NHE-RF1; acetylation, cell
projection, disease mutation, membrane, phosphoprotein,
polymorphism; NMR {Homo sapiens}
Length = 216
Score = 133 bits (336), Expect = 3e-38
Identities = 66/236 (27%), Positives = 107/236 (45%), Gaps = 31/236 (13%)
Query: 10 RLCHILKWTDFDGYGFNLHGEKGKTGQYIGKVDEGSPAEAAGLKEGDHIIEVNSVNICNE 69
RLC + K GYGFNLH +K K GQ+I VD SPAEA+GL+ D I+EVN V + +
Sbjct: 11 RLCTMKKGPS--GYGFNLHSDKSKPGQFIRSVDPDSPAEASGLRAQDRIVEVNGVCMEGK 68
Query: 70 NHNQVVQRIKAVPDETKLLVVDVASEEYFKSNNITISSSLPDIVHLRTPATSGNSNHVEK 129
H VV I+A DETKLLVVD ++E+FK + S + L P T+G
Sbjct: 69 QHGDVVSAIRAGGDETKLLVVDRETDEFFKKCRVIPSQEHLN-GPLPVPFTNGEIQKENS 127
Query: 130 PSSEAASEEYFKSNNITISSSLPDIVHLRTPATSGNSNHVEKPSSEESNNSTNQSLTNNT 189
+ A + + S++++ + + ++
Sbjct: 128 REALAEAAL---------------------------ESPRPALVRSASSDTSEELNSQDS 160
Query: 190 PTPTTNTNNTTNHENQNNLNLNMSAKELRAKLASRKKYDPKKDYLDIKKKYDISTN 245
P +T ++ + L+ N+S + + A +K+ + +D KK ++ +N
Sbjct: 161 PPKQDSTAPSSTSSSDPILDFNISLAMAKER-AHQKRSSKRAPQMDWSKKNELFSN 215
>2kjd_A Sodium/hydrogen exchange regulatory cofactor NHE- RF1; PDZ domain,
protein, acetylation, cell projection, disease mutation,
membrane; NMR {Homo sapiens}
Length = 128
Score = 130 bits (328), Expect = 5e-38
Identities = 53/115 (46%), Positives = 68/115 (59%), Gaps = 3/115 (2%)
Query: 10 RLCHILKWTDFDGYGFNLHGEKGKTGQYIGKVDEGSPAEAAGLKEGDHIIEVNSVNICNE 69
RLC + K GYGFNLH +K K GQ+I VD SPAEA+GL+ D I+EVN V + +
Sbjct: 11 RLCTMKKGPS--GYGFNLHSDKSKPGQFIRSVDPDSPAEASGLRAQDRIVEVNGVCMEGK 68
Query: 70 NHNQVVQRIKAVPDETKLLVVDVASEEYFKSNNITISSSLPDIVHLRTPATSGNS 124
H VV I+A DETKLLVVD ++E+FK + S + L P T+G
Sbjct: 69 QHGDVVSAIRAGGDETKLLVVDRETDEFFKKCRVIPSQEHLNGP-LPVPFTNGEI 122
>2vsp_A PDZ domain-containing protein 1; membrane, cytoplasm,
phosphoprotein, transport protein, CAsp; 2.60A {Homo
sapiens} PDB: 2eej_A
Length = 91
Score = 127 bits (321), Expect = 2e-37
Identities = 34/87 (39%), Positives = 55/87 (63%), Gaps = 2/87 (2%)
Query: 10 RLCHILKWTDFDGYGFNLHGEKGKTGQYIGKVDEGSPAEAAGLKEGDHIIEVNSVNICNE 69
+LC + K + GYGF+L+ +G G +I +V +G PA+ AGL++ D IIEVN VN+ +E
Sbjct: 5 KLCRLAKGEN--GYGFHLNAIRGLPGSFIKEVQKGGPADLAGLEDEDVIIEVNGVNVLDE 62
Query: 70 NHNQVVQRIKAVPDETKLLVVDVASEE 96
+ +VV RI++ LLV +++
Sbjct: 63 PYEKVVDRIQSSGKNVTLLVCGKKAQD 89
>1g9o_A NHE-RF; PDZ domain, complex, signaling protein; 1.50A {Homo
sapiens} SCOP: b.36.1.1 PDB: 1i92_A 1gq4_A 1gq5_A
2ocs_A
Length = 91
Score = 127 bits (321), Expect = 3e-37
Identities = 48/89 (53%), Positives = 60/89 (67%), Gaps = 2/89 (2%)
Query: 10 RLCHILKWTDFDGYGFNLHGEKGKTGQYIGKVDEGSPAEAAGLKEGDHIIEVNSVNICNE 69
RLC + K + GYGF+LHGEKGK GQYI V+ GSPAE AGL GD ++EVN N+ E
Sbjct: 5 RLCCLEKGPN--GYGFHLHGEKGKLGQYIRLVEPGSPAEKAGLLAGDRLVEVNGENVEKE 62
Query: 70 NHNQVVQRIKAVPDETKLLVVDVASEEYF 98
H QVV RI+A + +LLVVD ++E
Sbjct: 63 THQQVVSRIRAALNAVRLLVVDPETDEQL 91
>3r68_A Na(+)/H(+) exchange regulatory cofactor NHE-RF3; PDZ domain,
adaptor protein, SR-BI, signaling protein; 1.30A {Mus
musculus} PDB: 3r69_A*
Length = 95
Score = 127 bits (320), Expect = 3e-37
Identities = 35/90 (38%), Positives = 52/90 (57%), Gaps = 2/90 (2%)
Query: 10 RLCHILKWTDFDGYGFNLHGEKGKTGQYIGKVDEGSPAEAAGLKEGDHIIEVNSVNICNE 69
R+ I K ++ GYGF L + GQ I ++ GSPAEAAGLK D ++ VN ++
Sbjct: 7 RVVVIKKGSN--GYGFYLRAGPEQKGQIIKDIEPGSPAEAAGLKNNDLVVAVNGKSVEAL 64
Query: 70 NHNQVVQRIKAVPDETKLLVVDVASEEYFK 99
+H+ VV+ I+ D+T LLV+D E +
Sbjct: 65 DHDGVVEMIRKGGDQTTLLVLDKELERPHR 94
>2he4_A Na(+)/H(+) exchange regulatory cofactor NHE-RF2; phosphorylation,
structural genomics, structural genomics consortium,
SGC, unknown function; 1.45A {Homo sapiens} PDB: 2ozf_A
Length = 90
Score = 126 bits (319), Expect = 4e-37
Identities = 43/86 (50%), Positives = 54/86 (62%), Gaps = 2/86 (2%)
Query: 10 RLCHILKWTDFDGYGFNLHGEKGKTGQYIGKVDEGSPAEAAGLKEGDHIIEVNSVNICNE 69
RLCH+ K GYGFNLH +K + GQYI VD GSPA +GL+ D +IEVN N+
Sbjct: 6 RLCHLRKGPQ--GYGFNLHSDKSRPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGL 63
Query: 70 NHNQVVQRIKAVPDETKLLVVDVASE 95
H +VV IKA DE +LLVV ++
Sbjct: 64 RHAEVVASIKAREDEARLLVVGPSTR 89
>2edz_A PDZ domain-containing protein 1; CFTR-associated protein of 70 kDa,
Na/PI cotransporter C- terminal-associated protein,
NAPI-CAP1; NMR {Mus musculus}
Length = 114
Score = 127 bits (320), Expect = 5e-37
Identities = 37/105 (35%), Positives = 53/105 (50%), Gaps = 1/105 (0%)
Query: 2 SEDKTPVVRLCHILKWTDFDGYGFNLHGEKGKTGQYIGKVDEGSPAEAAGLKEGDHIIEV 61
T R C + K + YGF L EK G I ++EGSPAE AGL +GD ++ +
Sbjct: 7 GMASTFNPRECKLSKQ-EGQNYGFFLRIEKDTDGHLIRVIEEGSPAEKAGLLDGDRVLRI 65
Query: 62 NSVNICNENHNQVVQRIKAVPDETKLLVVDVASEEYFKSNNITIS 106
N V + E H QVV+ ++ + LLV+D S E N + +
Sbjct: 66 NGVFVDKEEHAQVVELVRKSGNSVTLLVLDGDSYEKAVKNQVDLK 110
>3ngh_A PDZ domain-containing protein 1; adaptor protein, SR-BI, signaling
protein; 1.80A {Mus musculus}
Length = 106
Score = 126 bits (319), Expect = 7e-37
Identities = 35/98 (35%), Positives = 51/98 (52%), Gaps = 1/98 (1%)
Query: 10 RLCHILKWTDFDGYGFNLHGEKGKTGQYIGKVDEGSPAEAAGLKEGDHIIEVNSVNICNE 69
R + K + YGF L EK G I ++EGSPAE AGL +GD ++ +N V + E
Sbjct: 3 RESKLSKQ-EGQNYGFFLRIEKDTDGHLIRVIEEGSPAEKAGLLDGDRVLRINGVFVDKE 61
Query: 70 NHNQVVQRIKAVPDETKLLVVDVASEEYFKSNNITISS 107
H QVV+ ++ + LLV+D S E N + +
Sbjct: 62 EHAQVVELVRKSGNSVTLLVLDGDSYEKAVKNQVDLKE 99
>2d90_A PDZ domain containing protein 1; structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Mus musculus}
Length = 102
Score = 125 bits (315), Expect = 2e-36
Identities = 35/92 (38%), Positives = 54/92 (58%), Gaps = 2/92 (2%)
Query: 10 RLCHILKWTDFDGYGFNLHGEKGKTGQYIGKVDEGSPAEAAGLKEGDHIIEVNSVNICNE 69
R+ I K ++ GYGF L + GQ I ++ GSPAEAAGLK D ++ VN ++
Sbjct: 8 RVVVIKKGSN--GYGFYLRAGPEQKGQIIKDIEPGSPAEAAGLKNNDLVVAVNGKSVEAL 65
Query: 70 NHNQVVQRIKAVPDETKLLVVDVASEEYFKSN 101
+H+ VV+ I+ D+T LLV+D +E + +
Sbjct: 66 DHDGVVEMIRKGGDQTTLLVLDKEAESIYSLS 97
>2v90_A PDZ domain-containing protein 3; membrane, protein-binding; 2.00A
{Homo sapiens}
Length = 96
Score = 118 bits (298), Expect = 8e-34
Identities = 30/93 (32%), Positives = 47/93 (50%), Gaps = 5/93 (5%)
Query: 10 RLCHILKWTDFDGYGFNLHGEK---GKTGQYIGKVDEGSPAEAAGLKEGDHIIEVNSVNI 66
R H+ K G+GF L EK G+ GQ++ +VD G PA+ AG++ GD ++ V ++
Sbjct: 5 RCLHLEKGPQ--GFGFLLREEKGLDGRPGQFLWEVDPGLPAKKAGMQAGDRLVAVAGESV 62
Query: 67 CNENHNQVVQRIKAVPDETKLLVVDVASEEYFK 99
H + V RI+ L VVD ++
Sbjct: 63 EGLGHEETVSRIQGQGSCVSLTVVDPEADRETS 95
>2kv8_A RGS12, regulator of G-protein signaling 12; PDZ domain, signaling
protein; NMR {Homo sapiens}
Length = 83
Score = 116 bits (293), Expect = 3e-33
Identities = 26/85 (30%), Positives = 41/85 (48%), Gaps = 5/85 (5%)
Query: 7 PVVRLCHILKWTDFDGYGFNLHGEKGKTGQYIGKVDEGSPAEAAGLKEGDHIIEVNSVNI 66
P VR + + GYGF L G+ + V GSPA+ GL+ GD I+ VN +N+
Sbjct: 1 PRVRSVEVAR--GRAGYGFTLSGQAP---CVLSCVMRGSPADFVGLRAGDQILAVNEINV 55
Query: 67 CNENHNQVVQRIKAVPDETKLLVVD 91
+H VV+ I +++ +
Sbjct: 56 KKASHEDVVKLIGKCSGVLHMVIAE 80
>3qe1_A Sorting nexin-27, G protein-activated inward RECT potassium channel
3 chimera; PDZ domain, PDZ binding, GIRK3 regulation,
early endosomes; 1.68A {Rattus norvegicus} PDB: 3qdo_A
3qgl_A
Length = 107
Score = 110 bits (278), Expect = 9e-31
Identities = 35/103 (33%), Positives = 50/103 (48%), Gaps = 15/103 (14%)
Query: 7 PVVRLCHILKWTDFDGYGFNLHGEKGKT-------------GQYIGKVDEGSPAEAAGLK 53
R+ I+K GYGFN+ G+ + Q++ V G A+ AG++
Sbjct: 5 GSPRVVRIVKSES--GYGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLPGGAADRAGVR 62
Query: 54 EGDHIIEVNSVNICNENHNQVVQRIKAVPDETKLLVVDVASEE 96
+GD I+EVN VN+ H QVV I+A E L V+ V SE
Sbjct: 63 KGDRILEVNGVNVEGATHKQVVDLIRAGEKELILTVLSVESES 105
>2dls_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; PDZ
domain, arhgef11, KIAA0380, structural genomics,
NPPSFA; NMR {Homo sapiens} PDB: 2omj_A 2os6_A
Length = 93
Score = 110 bits (276), Expect = 1e-30
Identities = 31/93 (33%), Positives = 47/93 (50%), Gaps = 6/93 (6%)
Query: 2 SEDKTPVVRLCHILKWTDFDGYGFNLHGEKGKTGQYIGKVDEGSPAEAAGLKEGDHIIEV 61
S + V R I K D G+GF + G++ + V G A AG+KEGD II+V
Sbjct: 2 SSGSSGVQRCVIIQK--DQHGFGFTVSGDRI---VLVQSVRPGGAAMKAGVKEGDRIIKV 56
Query: 62 NSVNICNENHNQVVQRIKAVPDETKLLVVDVAS 94
N + N +H +VV+ IK+ L ++ +S
Sbjct: 57 NGTMVTNSSHLEVVKLIKSGAYVA-LTLLGSSS 88
>2ego_A General receptor for phosphoinositides 1- associated scaffold
protein; PDZ domain, ligand-free, protein binding;
1.80A {Rattus norvegicus} PDB: 2egn_A 2egk_A 2pnt_A
Length = 96
Score = 106 bits (266), Expect = 3e-29
Identities = 24/91 (26%), Positives = 43/91 (47%), Gaps = 9/91 (9%)
Query: 10 RLCHILKWTDFDGYGFNLHG--------EKGKTGQYIGKVDEGSPAEAAGLKEGDHIIEV 61
++ + K D +GF + ++ + ++ +V E SPA+ AGL GD I V
Sbjct: 6 KVLTLEK-GDNQTFGFEIQTYGLHHREEQRVEMVTFVARVHESSPAQLAGLTPGDTIASV 64
Query: 62 NSVNICNENHNQVVQRIKAVPDETKLLVVDV 92
N +N+ H ++V IKA + +L +
Sbjct: 65 NGLNVEGIRHREIVDIIKASGNVLRLETLYG 95
>2f5y_A Regulator of G-protein signalling 3 isoform 1; PDZ domain, RGS-3,
human, structural genomics, structural GE consortium,
SGC, signaling protein; 2.39A {Homo sapiens} SCOP:
b.36.1.1
Length = 91
Score = 105 bits (265), Expect = 5e-29
Identities = 23/87 (26%), Positives = 42/87 (48%), Gaps = 5/87 (5%)
Query: 9 VRLCHILKWTDFDGYGFNLHGEKGKTGQYIGKVDEGSPAEAAGLKEGDHIIEVNSVNICN 68
R I + DG+GF + + + VD G PAE AGL++ D ++++N + +
Sbjct: 4 YRQITIPR--GKDGFGFTICCDSP---VRVQAVDSGGPAERAGLQQLDTVLQLNERPVEH 58
Query: 69 ENHNQVVQRIKAVPDETKLLVVDVASE 95
++ I++ P E LLV + +
Sbjct: 59 WKCVELAHEIRSCPSEIILLVWRMVPQ 85
>1whd_A RGS3, regulator of G-protein signaling 3; PDZ domain, structural
genomics, riken structural genomics/proteomics
initiative, RSGI, signaling protein; NMR {Mus musculus}
SCOP: b.36.1.1
Length = 100
Score = 104 bits (262), Expect = 1e-28
Identities = 22/90 (24%), Positives = 41/90 (45%), Gaps = 5/90 (5%)
Query: 2 SEDKTPVVRLCHILKWTDFDGYGFNLHGEKGKTGQYIGKVDEGSPAEAAGLKEGDHIIEV 61
+ + I + DG+GF + + + VD G PAE AGL++ D ++++
Sbjct: 9 GDPENGEKLQITIRR--GKDGFGFTICCDSP---VRVQAVDSGGPAERAGLQQLDTVLQL 63
Query: 62 NSVNICNENHNQVVQRIKAVPDETKLLVVD 91
N + + ++ I++ P E LLV
Sbjct: 64 NERPVEHWKCVELAHEIRSCPSEIILLVWR 93
>2z17_A Pleckstrin homology SEC7 and coiled-coil domains- binding protein;
PDZ domain, cytoplasm, membrane, polymorphism, protein
binding; 2.70A {Homo sapiens}
Length = 104
Score = 104 bits (262), Expect = 1e-28
Identities = 23/97 (23%), Positives = 42/97 (43%), Gaps = 9/97 (9%)
Query: 2 SEDKTPVVRLCHILKWTDFDGYGFNLHGEKGKTG--------QYIGKVDEGSPAEAAGLK 53
S+ +L + K D + +GF + + + I K+ E SPA AGL+
Sbjct: 9 SDFSWSQRKLVTVEK-QDNETFGFEIQSYRPQNQNACSSEMFTLICKIQEDSPAHCAGLQ 67
Query: 54 EGDHIIEVNSVNICNENHNQVVQRIKAVPDETKLLVV 90
GD + +N V+ + QVV I++ + + +
Sbjct: 68 AGDVLANINGVSTEGFTYKQVVDLIRSSGNLLTIETL 104
>1m5z_A GRIP, AMPA receptor interacting protein; six beta-strands and two
alpha-helices, protein binding; NMR {Rattus norvegicus}
SCOP: b.36.1.1
Length = 91
Score = 102 bits (255), Expect = 1e-27
Identities = 20/85 (23%), Positives = 40/85 (47%), Gaps = 1/85 (1%)
Query: 6 TPV-VRLCHILKWTDFDGYGFNLHGEKGKTGQYIGKVDEGSPAEAAGLKEGDHIIEVNSV 64
TPV + + K + + +GF++ + G Y+ + P + GLK D +++VN V
Sbjct: 3 TPVELHKVTLYKDSGMEDFGFSVADGLLEKGVYVKNIRPAGPGDLGGLKPYDRLLQVNHV 62
Query: 65 NICNENHNQVVQRIKAVPDETKLLV 89
+ + VV I ++ L++
Sbjct: 63 RTRDFDCCLVVPLIAESGNKLDLVI 87
>3khf_A Microtubule-associated serine/threonine-protein kinase 3; MAST3,
microtubule associated serine/threonine kinase 3, PDZ
domain, structural genomics; 1.20A {Homo sapiens} PDB:
2w7r_A 2kqf_A 2kyl_A 3ps4_A
Length = 99
Score = 102 bits (256), Expect = 1e-27
Identities = 23/96 (23%), Positives = 43/96 (44%), Gaps = 9/96 (9%)
Query: 9 VRLCHILKWTDFDGYGFNLHGEKGKTG--------QYIGKVDEGSPAEAAGLKEGDHIIE 60
+R ++ + YGF+L + G + V++GSPA+ AGL+ GD I
Sbjct: 2 MRPPIVIH-SSGKKYGFSLRAIRVYMGDSDVYTVHHVVWSVEDGSPAQEAGLRAGDLITH 60
Query: 61 VNSVNICNENHNQVVQRIKAVPDETKLLVVDVASEE 96
+N ++ H VV+ + ++ L + + E
Sbjct: 61 INGESVLGLVHMDVVELLLKSGNKISLRTTALENTE 96
>1q3o_A Shank1; PDZ, GKAP, peptide binding protein; 1.80A {Rattus
norvegicus} SCOP: b.36.1.1 PDB: 1q3p_A 3qjm_A 3qjn_A
3o5n_A*
Length = 109
Score = 101 bits (252), Expect = 5e-27
Identities = 35/102 (34%), Positives = 47/102 (46%), Gaps = 14/102 (13%)
Query: 4 DKTPVVRLCHILKWTDFDGYGFNLHGEKGKTG-------------QYIGKVDEGSPAEAA 50
D + + K D +G+GF L G K +T QY+ VDEG A A
Sbjct: 3 DYIIKEKTVLLQK-KDSEGFGFVLRGAKAQTPIEEFTPTPAFPALQYLESVDEGGVAWRA 61
Query: 51 GLKEGDHIIEVNSVNICNENHNQVVQRIKAVPDETKLLVVDV 92
GL+ GD +IEVN N+ H QVV I+ + + VV V
Sbjct: 62 GLRMGDFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVKVVMV 103
>3bpu_A Membrane-associated guanylate kinase, WW and PDZ containing
protein 1; structural genomi consortium, SGC,
ATP-binding, cell junction; 1.60A {Homo sapiens}
Length = 88
Score = 98.1 bits (245), Expect = 3e-26
Identities = 30/81 (37%), Positives = 41/81 (50%), Gaps = 6/81 (7%)
Query: 13 HILKWTDFDGYGFNLHGEKGKTGQYIGKVDEGSPAEAAGLKEGDHIIEVNSVNICNENHN 72
HI+K G+GF + G GQ + ++ + + GLKEGD I+EVN N+ HN
Sbjct: 8 HIVKGPM--GFGFTIADSPGGGGQRVKQIVD--SPRSRGLKEGDLIVEVNKKNVQALTHN 63
Query: 73 QVVQRIKAVP--DETKLLVVD 91
QVV + P E LLV
Sbjct: 64 QVVDMLVESPKGSEVTLLVQR 84
>2eaq_A LIM domain only protein 7; conserved hypothetical protein,
structural genomics, NPPSFA; 1.46A {Homo sapiens}
Length = 90
Score = 96.3 bits (240), Expect = 2e-25
Identities = 21/84 (25%), Positives = 37/84 (44%), Gaps = 3/84 (3%)
Query: 9 VRLCHILKWTDFDGYGFNLHGEKGKTGQYIGKVDEGSPAEAAGLKEGDHIIEVNSVNICN 68
+R+ +GF + G ++ V+ GSPAE + L+ D II +N+
Sbjct: 5 MRISINQTPGKSLDFGFTIKW--DIPGIFVASVEAGSPAEFSQLQVDDEIIAINNTKFSY 62
Query: 69 ENHNQVVQRIKAVPDETKLLVVDV 92
+ + + + ET LV+DV
Sbjct: 63 NDSKEWEEAMAKAQ-ETGHLVMDV 85
>3l4f_D SH3 and multiple ankyrin repeat domains protein 1; coiled-coil,
PDZ, guanine-nucleotide releasing factor,
phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus}
Length = 132
Score = 96.2 bits (239), Expect = 8e-25
Identities = 35/104 (33%), Positives = 47/104 (45%), Gaps = 14/104 (13%)
Query: 2 SEDKTPVVRLCHILKWTDFDGYGFNLHGEKGKTG-------------QYIGKVDEGSPAE 48
D + + K D +G+GF L G K +T QY+ VDEG A
Sbjct: 21 GSDYIIKEKTVLLQK-KDSEGFGFVLRGAKAQTPIEEFTPTPAFPALQYLESVDEGGVAW 79
Query: 49 AAGLKEGDHIIEVNSVNICNENHNQVVQRIKAVPDETKLLVVDV 92
AGL+ GD +IEVN N+ H QVV I+ + + VV V
Sbjct: 80 RAGLRMGDFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVKVVMV 123
>2yuy_A RHO GTPase activating protein 21; PDZ domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 126
Score = 93.8 bits (233), Expect = 5e-24
Identities = 21/85 (24%), Positives = 38/85 (44%)
Query: 12 CHILKWTDFDGYGFNLHGEKGKTGQYIGKVDEGSPAEAAGLKEGDHIIEVNSVNICNENH 71
+ + G + + ++ +V EG PA AGL GD II+VN ++ + +
Sbjct: 39 FSYKDEENGNRGGKQRNRLEPMDTIFVKQVKEGGPAFEAGLCTGDRIIKVNGESVIGKTY 98
Query: 72 NQVVQRIKAVPDETKLLVVDVASEE 96
+QV+ I+ +L V+ S
Sbjct: 99 SQVIALIQNSDTTLELSVMPKDSGP 123
>1vae_A Rhophilin 2, rhophilin, RHO GTPase binding protein 2; PDZ domain,
intracellular signaling cascade, signal transduction;
NMR {Mus musculus} SCOP: b.36.1.1
Length = 111
Score = 92.2 bits (229), Expect = 1e-23
Identities = 21/89 (23%), Positives = 37/89 (41%), Gaps = 6/89 (6%)
Query: 9 VRLCHILKWTDFDGYGFNLHGEKGKTGQYIGKVDEGSPAEAAGLKEGDHIIEVNSVNICN 68
R H + GF L G + +D A AG KEGD+I+ + V+
Sbjct: 16 PRGIHFTV--EEGDLGFTLRGNTP---VQVHFLDPHCSASLAGAKEGDYIVSIQGVDCKW 70
Query: 69 ENHNQVVQRIKAVPDET-KLLVVDVASEE 96
++V++ +K+ E ++ VV +
Sbjct: 71 LTVSEVMKLLKSFGGEEVEMKVVSLLDST 99
>2vsv_A Rhophilin-2; scaffold protein, RHO GTPase binding, protein-binding,
RHOB, nitration, cytoplasm, PDZ domain, CAsp8; 1.82A
{Homo sapiens}
Length = 109
Score = 89.9 bits (223), Expect = 9e-23
Identities = 20/90 (22%), Positives = 39/90 (43%), Gaps = 6/90 (6%)
Query: 10 RLCHILKWTDFDGYGFNLHGEKGKTGQYIGKVDEGSPAEAAGLKEGDHIIEVNSVNICNE 69
R + GF L G + +D A AG +EGD+I+ + V+
Sbjct: 25 RSIRFTA--EEGDLGFTLRGNAP---VQVHFLDPYCSASVAGAREGDYIVSIQLVDCKWL 79
Query: 70 NHNQVVQRIKAVPDET-KLLVVDVASEEYF 98
++V++ +K+ ++ ++ VV + E F
Sbjct: 80 TLSEVMKLLKSFGEDEIEMKVVSLLDEVTF 109
>3i4w_A Disks large homolog 4; alpha and beta protein, alternative
splicing, cell junction, cell membrane, lipoprotein,
membrane, palmitate, phosphoprotein; 1.35A {Homo
sapiens} PDB: 3k82_A* 3jxt_A* 2he2_A 1pdr_A 2i0i_A
Length = 104
Score = 89.7 bits (223), Expect = 9e-23
Identities = 27/101 (26%), Positives = 45/101 (44%), Gaps = 4/101 (3%)
Query: 2 SEDKTPVVRLCHILKWTDFDGYGFNLHGEKGKTGQYIGKVDEGSPAEAAG-LKEGDHIIE 60
ED R I + G GFN+ G + G +I + G PA+ +G L++GD I+
Sbjct: 5 EEDIPREPRRIVIHR--GSTGLGFNIVGGEXGEGIFISFILAGGPADLSGELRKGDQILS 62
Query: 61 VNSVNICNENHNQVVQRIKAVPDETKLLV-VDVASEEYFKS 100
VN V++ N +H Q +K ++ F++
Sbjct: 63 VNGVDLRNASHEQAAIALKNAGQTVTIIAQYKPEEYSRFEA 103
>1um7_A Synapse-associated protein 102; PDZ, discs large homolog 3,
DLG3-human presynaptic protein, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo
sapiens} SCOP: b.36.1.1
Length = 113
Score = 82.8 bits (205), Expect = 4e-20
Identities = 24/88 (27%), Positives = 38/88 (43%), Gaps = 3/88 (3%)
Query: 3 EDKTPVVRLCHILKWTDFDGYGFNLHGEKGKTGQYIGKVDEGSPAEAAG-LKEGDHIIEV 61
R + K G GFN+ G + G ++ + G PA+ +G L+ GD I+ V
Sbjct: 10 GGDAREPRKIILHK--GSTGLGFNIVGGEDGEGIFVSFILAGGPADLSGELRRGDRILSV 67
Query: 62 NSVNICNENHNQVVQRIKAVPDETKLLV 89
N VN+ N H Q +K ++
Sbjct: 68 NGVNLRNATHEQAAAALKRAGQSVTIVA 95
>1uez_A KIAA1526 protein; PDZ domain, structural genomics, riken
structural genomics/proteomics initiative, RSGI,
protein binding; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 101
Score = 81.6 bits (202), Expect = 1e-19
Identities = 25/89 (28%), Positives = 41/89 (46%), Gaps = 1/89 (1%)
Query: 2 SEDKTPVVRLCHILKWTDFDGYGFNLHGEK-GKTGQYIGKVDEGSPAEAAGLKEGDHIIE 60
S + VRL + + +G GF++ G G Y+ V+ GS AE GL+ GD I+
Sbjct: 2 SSGSSGEVRLVSLRRAKAHEGLGFSIRGGSEHGVGIYVSLVEPGSLAEKEGLRVGDQILR 61
Query: 61 VNSVNICNENHNQVVQRIKAVPDETKLLV 89
VN ++ H + V+ +K +
Sbjct: 62 VNDKSLARVTHAEAVKALKGSKKLVLSVY 90
>1tp5_A Presynaptic density protein 95; PDZ-peptide ligand complex, peptide
binding protein; 1.54A {Rattus norvegicus} SCOP:
b.36.1.1 PDB: 1tp3_A 1tq3_A 1be9_A 1bfe_A
Length = 119
Score = 81.7 bits (202), Expect = 1e-19
Identities = 30/109 (27%), Positives = 49/109 (44%), Gaps = 4/109 (3%)
Query: 2 SEDKTPVVRLCHILKWTDFDGYGFNLHGEKGKTGQYIGKVDEGSPAEAAG-LKEGDHIIE 60
ED R I + G GFN+ G + G +I + G PA+ +G L++GD I+
Sbjct: 8 EEDIPREPRRIVIHR--GSTGLGFNIVGGEDGEGIFISFILAGGPADLSGELRKGDQILS 65
Query: 61 VNSVNICNENHNQVVQRIKAVPDETKLLVV-DVASEEYFKSNNITISSS 108
VN V++ N +H Q +K ++ F++N+ SS
Sbjct: 66 VNGVDLRNASHEQAAIALKNAGQTVTIIAQYKPEEYSRFEANSRVDSSG 114
>2edv_A FERM and PDZ domain-containing protein 1; cytoskeletal-associated
protein, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 96
Score = 80.5 bits (199), Expect = 2e-19
Identities = 20/89 (22%), Positives = 34/89 (38%), Gaps = 4/89 (4%)
Query: 2 SEDKTPVVRLCHILKWTDFDGYGFNLHGEKGKTGQYIGKVDEGSPAEAAGLKEGDHIIEV 61
S + V I K T YGF++ + V G A L GD I+++
Sbjct: 2 SSGSSGVRHTVKIDKDTLLQDYGFHISESLP---LTVVAVTAGGSAHG-KLFPGDQILQM 57
Query: 62 NSVNICNENHNQVVQRIKAVPDETKLLVV 90
N+ + + + V ++ D + VV
Sbjct: 58 NNEPAEDLSWERAVDILREAEDSLSITVV 86
>1v5l_A PDZ and LIM domain 3; actinin alpha 2 associated LIM protein; PDZ
domain, cytoskeleton, actin binding, structural
genomics; NMR {Mus musculus} SCOP: b.36.1.1
Length = 103
Score = 79.7 bits (197), Expect = 5e-19
Identities = 20/69 (28%), Positives = 29/69 (42%), Gaps = 1/69 (1%)
Query: 22 GYGFNLHGEKG-KTGQYIGKVDEGSPAEAAGLKEGDHIIEVNSVNICNENHNQVVQRIKA 80
+GF L G I ++ GS A AA L GD I+ ++ + H RIKA
Sbjct: 16 PWGFRLSGGIDFNQPLVITRITPGSKAAAANLCPGDVILAIDGFGTESMTHADAQDRIKA 75
Query: 81 VPDETKLLV 89
+ L +
Sbjct: 76 ASYQLCLKI 84
>1x5n_A Harmonin; PDZ domain, usher syndrome 1C protein, autoimmune
enteropathy-related antigen AIE-75 ,antigen
NY-CO-38/NY-CO- 37, PDZ-73 protein; NMR {Homo sapiens}
SCOP: b.36.1.1 PDB: 2kbs_A
Length = 114
Score = 79.5 bits (196), Expect = 7e-19
Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 1/83 (1%)
Query: 21 DGYGFNLHGEKG-KTGQYIGKVDEGSPAEAAGLKEGDHIIEVNSVNICNENHNQVVQRIK 79
G G ++ K G +I V GS + GL+ GD I+EVN V+ N +H + V +K
Sbjct: 27 RGLGCSISSGPIQKPGIFISHVKPGSLSAEVGLEIGDQIVEVNGVDFSNLDHKEAVNVLK 86
Query: 80 AVPDETKLLVVDVASEEYFKSNN 102
+ T +V E + +
Sbjct: 87 SSRSLTISIVAAAGRELFMTDRS 109
>2vz5_A TAX1-binding protein 3; WNT signaling pathway, protein binding,
nucleus, cytoplasm, PDZ domain; 1.74A {Homo sapiens}
PDB: 3dj1_A 3diw_A 2l4s_A 2l4t_A 3gj9_A 2kg2_A 3dj3_A
Length = 139
Score = 80.1 bits (197), Expect = 1e-18
Identities = 29/110 (26%), Positives = 51/110 (46%), Gaps = 13/110 (11%)
Query: 13 HILKWTDFDGYGFNLHG-------------EKGKTGQYIGKVDEGSPAEAAGLKEGDHII 59
H L+ + GF++ G +K G Y+ +V EG PAE AGL+ GD I+
Sbjct: 30 HKLRQGENLILGFSIGGGIDQDPSQNPFSEDKTDKGIYVTRVSEGGPAEIAGLQIGDKIM 89
Query: 60 EVNSVNICNENHNQVVQRIKAVPDETKLLVVDVASEEYFKSNNITISSSL 109
+VN ++ H+Q +R+ +E L+V S + ++ + +
Sbjct: 90 QVNGWDMTMVTHDQARKRLTKRSEEVVRLLVTRQSLQKAVQQSMLSETEV 139
>1uit_A Human discs large 5 protein; PDZ domain, HDLG5, maguk family,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo
sapiens} SCOP: b.36.1.1
Length = 117
Score = 79.1 bits (195), Expect = 1e-18
Identities = 23/88 (26%), Positives = 36/88 (40%), Gaps = 3/88 (3%)
Query: 2 SEDKTPVVRLCHILKWTDFDGYGFNLHGEKGKTGQYIGKVDEGSPAEAAGLKEGDHIIEV 61
R + K + G ++ + K G Y+ KV GS A AGL+ GD ++E
Sbjct: 13 DRPYVEEPRHVKVQK--GSEPLGISIVSGE-KGGIYVSKVTVGSIAHQAGLEYGDQLLEF 69
Query: 62 NSVNICNENHNQVVQRIKAVPDETKLLV 89
N +N+ + Q I D +L
Sbjct: 70 NGINLRSATEQQARLIIGQQCDTITILA 97
>2eeg_A PDZ and LIM domain protein 4; PDZ domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 94
Score = 77.7 bits (192), Expect = 2e-18
Identities = 22/69 (31%), Positives = 28/69 (40%), Gaps = 1/69 (1%)
Query: 22 GYGFNLHGEKG-KTGQYIGKVDEGSPAEAAGLKEGDHIIEVNSVNICNENHNQVVQRIKA 80
+GF L G + I +V GS A A L GD I +N + H + RIK
Sbjct: 19 PWGFRLVGGRDFSAPLTISRVHAGSKAALAALCPGDLIQAINGESTELMTHLEAQNRIKG 78
Query: 81 VPDETKLLV 89
D L V
Sbjct: 79 CHDHLTLSV 87
>1ujv_A Membrane associated guanylate kinase inverted-2 (MAGI-2);
atrophin-1 interacting protein 1, PDZ domain,
structural genomics, KIAA0705 protein; NMR {Homo
sapiens} SCOP: b.36.1.1
Length = 96
Score = 77.4 bits (191), Expect = 2e-18
Identities = 26/86 (30%), Positives = 42/86 (48%), Gaps = 8/86 (9%)
Query: 6 TPVVRLCHILKWTDFDGYGFNLHGEKGKTGQYIGKVDEGSPAEAAGLKEGDHIIEVNSVN 65
+ I+K G+GF + TGQ + ++ + GL EGD I+E+N N
Sbjct: 8 QAELMTLTIVK--GAQGFGFTIAD--SPTGQRVKQILD--IQGCPGLCEGDLIVEINQQN 61
Query: 66 ICNENHNQVVQRIKAVP--DETKLLV 89
+ N +H +VV +K P ET L++
Sbjct: 62 VQNLSHTEVVDILKDCPIGSETSLII 87
>2uzc_A Human pdlim5, PDZ and LIM domain 5; metal-binding, enigma
homolog, phosphorylation, signaling PR LIM domain, PDZ
domain; 1.5A {Homo sapiens}
Length = 88
Score = 76.5 bits (189), Expect = 5e-18
Identities = 15/69 (21%), Positives = 29/69 (42%), Gaps = 1/69 (1%)
Query: 22 GYGFNLHGEK-GKTGQYIGKVDEGSPAEAAGLKEGDHIIEVNSVNICNENHNQVVQRIKA 80
+GF L G K I + +G A A ++ GD ++ ++ +N H + +IK
Sbjct: 14 PWGFRLQGGKDFNMPLTISSLKDGGKAAQANVRIGDVVLSIDGINAQGMTHLEAQNKIKG 73
Query: 81 VPDETKLLV 89
+ +
Sbjct: 74 CTGSLNMTL 82
>1wf7_A Enigma homologue protein; PDZ domain, structural genomics, riken
structural genomics/proteomics initiative, RSGI,
unknown function; NMR {Mus musculus} SCOP: b.36.1.1
Length = 103
Score = 77.0 bits (190), Expect = 5e-18
Identities = 15/69 (21%), Positives = 30/69 (43%), Gaps = 1/69 (1%)
Query: 22 GYGFNLHGEKG-KTGQYIGKVDEGSPAEAAGLKEGDHIIEVNSVNICNENHNQVVQRIKA 80
+GF L G K I + +G A A ++ GD ++ ++ ++ H + +IKA
Sbjct: 16 PWGFRLQGGKDFNMPLTISSLKDGGKASQAHVRIGDVVLSIDGISAQGMTHLEAQNKIKA 75
Query: 81 VPDETKLLV 89
+ +
Sbjct: 76 CTGSLNMTL 84
>1rgw_A ZAsp protein; PDZ, cypher, oracle, muscle, Z-DISK, sarcomere,
structural protein; NMR {Homo sapiens} SCOP: b.36.1.1
PDB: 1wjl_A
Length = 85
Score = 76.1 bits (188), Expect = 7e-18
Identities = 18/69 (26%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
Query: 22 GYGFNLHGEKG-KTGQYIGKVDEGSPAEAAGLKEGDHIIEVNSVNICNENHNQVVQRIKA 80
+GF L G K I ++ GS A + L +GD ++ ++ VN H + +IK+
Sbjct: 12 PWGFRLQGGKDFNMPLTISRITPGSKAAQSQLSQGDLVVAIDGVNTDTMTHLEAQNKIKS 71
Query: 81 VPDETKLLV 89
L +
Sbjct: 72 ASYNLSLTL 80
>2pa1_A PDZ and LIM domain protein 2; PDZ domain, structural genomics,
structural genomics consort metal binding protein;
1.70A {Homo sapiens} PDB: 3pdv_A
Length = 87
Score = 75.4 bits (186), Expect = 1e-17
Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
Query: 22 GYGFNLHGEKG-KTGQYIGKVDEGSPAEAAGLKEGDHIIEVNSVNICNENHNQVVQRIKA 80
+GF + G + T + KV E A+ A L+ GD I+ +N + H + +I+
Sbjct: 13 PWGFRITGGRDFHTPIMVTKVAERGKAKDADLRPGDIIVAINGESAEGMLHAEAQSKIRQ 72
Query: 81 VPDETKLLV 89
P +L +
Sbjct: 73 SPSPLRLQL 81
>1r6j_A Syntenin 1; PDZ, membrane protein; 0.73A {Homo sapiens} SCOP:
b.36.1.1 PDB: 1nte_A 1obx_A 1oby_A
Length = 82
Score = 75.0 bits (185), Expect = 1e-17
Identities = 15/81 (18%), Positives = 27/81 (33%), Gaps = 7/81 (8%)
Query: 10 RLCHILKWTDFDGYGFNLHGEKGKTGQYIGKVDEGSPAEAAGLKEGDHIIEVNSVNICNE 69
R + K GF K I + + S A GL +I E+N N+
Sbjct: 6 RTITMHK-DSTGHVGFIFKNGK------ITSIVKDSSAARNGLLTEHNICEINGQNVIGL 58
Query: 70 NHNQVVQRIKAVPDETKLLVV 90
+Q+ + + ++
Sbjct: 59 KDSQIADILSTSGTVVTITIM 79
>1vb7_A PDZ and LIM domain 2; PDZ domain PDZ-LIM protein, structural
genomics, riken structural genomics/proteomics
initiative, RSGI, unknown function; NMR {Mus musculus}
SCOP: b.36.1.1
Length = 94
Score = 75.4 bits (186), Expect = 1e-17
Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Query: 22 GYGFNLHGEKG-KTGQYIGKVDEGSPAEAAGLKEGDHIIEVNSVNICNENHNQVVQRIKA 80
+GF + G + T + KV E AEAA L+ GD I+ +N + N H + +I+
Sbjct: 17 PWGFRISGGRDFHTPIIVTKVTERGKAEAADLRPGDIIVAINGQSAENMLHAEAQSKIRQ 76
Query: 81 VPDETKLLV 89
+L +
Sbjct: 77 SASPLRLQL 85
>2q3g_A PDZ and LIM domain protein 7; structural genomics, structural
genomics consortium, SGC; 1.11A {Homo sapiens}
Length = 89
Score = 75.0 bits (185), Expect = 2e-17
Identities = 17/69 (24%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
Query: 22 GYGFNLHGEKG-KTGQYIGKVDEGSPAEAAGLKEGDHIIEVNSVNICNENHNQVVQRIKA 80
+GF L G K I ++ G A AG+ GD ++ ++ N + H + +I+A
Sbjct: 14 PWGFRLQGGKDFNVPLSISRLTPGGKAAQAGVAVGDWVLSIDGENAGSLTHIEAQNKIRA 73
Query: 81 VPDETKLLV 89
+ L +
Sbjct: 74 CGERLSLGL 82
>3soe_A Membrane-associated guanylate kinase, WW and PDZ containing protein
3; structural genomics consortium, SGC, PDZ domain,
signaling P; 1.60A {Homo sapiens}
Length = 113
Score = 75.6 bits (186), Expect = 2e-17
Identities = 26/102 (25%), Positives = 41/102 (40%), Gaps = 6/102 (5%)
Query: 1 MSEDKTPVVRLCHILKWTDFDGYGFNLHGEKGKTGQYIGKVDEGSPAEAAGLKEGDHIIE 60
M+ L I G+GF + TGQ + + GL++GD I E
Sbjct: 3 MATLYKKAGLLVTIPLIKGPKGFGFAIAD--SPTGQKVKMI--LDSQWCQGLQKGDIIKE 58
Query: 61 VNSVNICNENHNQVVQRIKAVP--DETKLLVVDVASEEYFKS 100
+ N+ N H QVV+ +K P + LL++ K+
Sbjct: 59 IYHQNVQNLTHLQVVEVLKQFPVGADVPLLILRGGPPSPTKT 100
>2pkt_A PDZ and LIM domain protein 1; PDZ domain, structural genomics,
structural genomics consort unknown function; HET: PG4;
1.50A {Homo sapiens} PDB: 2v1w_A*
Length = 91
Score = 74.3 bits (183), Expect = 3e-17
Identities = 24/69 (34%), Positives = 30/69 (43%), Gaps = 1/69 (1%)
Query: 22 GYGFNLHGEK-GKTGQYIGKVDEGSPAEAAGLKEGDHIIEVNSVNICNENHNQVVQRIKA 80
+GF L G K + I +V GS A A L GD I ++ N N H + RIK
Sbjct: 14 PWGFRLVGGKDFEQPLAISRVTPGSKAALANLCIGDVITAIDGENTSNMTHLEAQNRIKG 73
Query: 81 VPDETKLLV 89
D L V
Sbjct: 74 CTDNLTLTV 82
>1y7n_A Amyloid beta A4 precursor protein-binding family A member 1;
copper chaperone for superoxide dismutase, neuronal
adaptor, protein transport; NMR {Homo sapiens} SCOP:
b.36.1.1
Length = 90
Score = 74.4 bits (183), Expect = 3e-17
Identities = 16/72 (22%), Positives = 29/72 (40%), Gaps = 6/72 (8%)
Query: 22 GYGFNLHGEKGKTGQYIGKVDEGSPAEAAGLKEGDHIIEVNSVNICNENHNQVVQRIKAV 81
GF++ I + G AE G++ G IIE+N ++ H ++V +
Sbjct: 25 QLGFSVQN------GIICSLMRGGIAERGGVRVGHRIIEINGQSVVATPHEKIVHILSNA 78
Query: 82 PDETKLLVVDVA 93
E + + A
Sbjct: 79 VGEIHMKTMPAA 90
>1wi2_A Riken cDNA 2700099C19; structural genomics, riken structural
genomics/proteomics initiative, RSGI, unknown function;
NMR {Mus musculus} SCOP: b.36.1.1
Length = 104
Score = 74.7 bits (184), Expect = 3e-17
Identities = 28/89 (31%), Positives = 45/89 (50%), Gaps = 3/89 (3%)
Query: 2 SEDKTPVVRLCHILKWTDFDGYGFNLHGEKG-KTGQYIGKVDEGSPAEAAGLKEGDHIIE 60
+E + R+ + K GFN+ G K + G +I KV S A AGL+EGD ++
Sbjct: 9 NELTQFLPRIVTLKK-PPGAQLGFNIRGGKASQLGIFISKVIPDSDAHRAGLQEGDQVLA 67
Query: 61 VNSVNICNENHNQVVQRIKAVPDETKLLV 89
VN V+ + H++ V+ +K E + V
Sbjct: 68 VNDVDFQDIEHSKAVEILKTA-REISMRV 95
>1w9e_A Syntenin 1; cell adhesion, adhesion/complex, PDZ domain,
scaffolding protein signaling protein; 1.56A {Homo
sapiens} SCOP: b.36.1.1 b.36.1.1 PDB: 1n99_A 1v1t_A
1obz_A 1w9o_A 1w9q_A 1ybo_A
Length = 166
Score = 76.4 bits (188), Expect = 4e-17
Identities = 17/81 (20%), Positives = 32/81 (39%), Gaps = 3/81 (3%)
Query: 10 RLCHILKWTDFDGYGFNLHGEKGKTGQYIGKVDEGSPAEAAGLKEGDHIIEVNSVNICNE 69
R + K G L G ++ V SPA GL+ GD ++++N N
Sbjct: 6 REVILCK-DQDGKIGLRLKSIDN--GIFVQLVQANSPASLVGLRFGDQVLQINGENCAGW 62
Query: 70 NHNQVVQRIKAVPDETKLLVV 90
+ ++ + +K E + +
Sbjct: 63 SSDKAHKVLKQAFGEKITMTI 83
Score = 55.2 bits (133), Expect = 2e-09
Identities = 13/84 (15%), Positives = 27/84 (32%), Gaps = 1/84 (1%)
Query: 8 VVRLCHILKWTDFDGYGFNLHGEKGKTGQYIGKVDEGSPAEAAGLKEGDHIIEVNSVNIC 67
+R + G K G+ + + S A GL +I E+N N+
Sbjct: 82 TIRDRPFERTITMHKDSTGHVGFIFKNGKITS-IVKDSSAARNGLLTEHNICEINGQNVI 140
Query: 68 NENHNQVVQRIKAVPDETKLLVVD 91
+Q+ + + ++
Sbjct: 141 GLKDSQIADILSTSGTVVTITIMP 164
>1x5q_A LAP4 protein; PDZ domain, scribble homolog protein, hscrib,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.36.1.1
Length = 110
Score = 73.9 bits (182), Expect = 8e-17
Identities = 20/76 (26%), Positives = 37/76 (48%), Gaps = 7/76 (9%)
Query: 21 DGYGFNLHG-------EKGKTGQYIGKVDEGSPAEAAGLKEGDHIIEVNSVNICNENHNQ 73
G G ++ G + G +I +V E PA AG++ GD ++EVN V + H++
Sbjct: 26 GGLGISIAGGKGSTPYKGDDEGIFISRVSEEGPAARAGVRVGDKLLEVNGVALQGAEHHE 85
Query: 74 VVQRIKAVPDETKLLV 89
V+ ++ ++ V
Sbjct: 86 AVEALRGAGTAVQMRV 101
>2w4f_A Protein LAP4; structural protein, phosphoprotein, UBL
conjugation, leucine-rich repeat, alternative splicing,
cytoplasm, circletail, coiled coil; 1.30A {Homo
sapiens}
Length = 97
Score = 73.5 bits (181), Expect = 8e-17
Identities = 20/76 (26%), Positives = 37/76 (48%), Gaps = 7/76 (9%)
Query: 21 DGYGFNLHG-------EKGKTGQYIGKVDEGSPAEAAGLKEGDHIIEVNSVNICNENHNQ 73
G G ++ G + G +I +V E PA AG++ GD ++EVN V + H++
Sbjct: 14 GGLGISIAGGKGSTPYKGDDEGIFISRVSEEGPAARAGVRVGDKLLEVNGVALQGAEHHE 73
Query: 74 VVQRIKAVPDETKLLV 89
V+ ++ ++ V
Sbjct: 74 AVEALRGAGTAVQMRV 89
>2qt5_A Glutamate receptor-interacting protein 1; PDZ-peptide complex, PDZ
tandem, alternative splicing, cell junction, cytoplasm;
2.30A {Rattus norvegicus}
Length = 200
Score = 75.5 bits (186), Expect = 2e-16
Identities = 20/83 (24%), Positives = 36/83 (43%), Gaps = 7/83 (8%)
Query: 21 DGYGFNLHG-----EKGKTGQYIGKVDEGSPAEAAG-LKEGDHIIEVNSVNICNENHNQV 74
+ +GF + G I V G PA+ G +K GD ++ V+ + + H +
Sbjct: 117 NTFGFVIRGGAHDDRNKSRPVVITCVRPGGPADREGTIKPGDRLLSVDGIRLLGTTHAEA 176
Query: 75 VQRIKAVPDETKLLVV-DVASEE 96
+ +K E LL+ DV+ +
Sbjct: 177 MSILKQCGQEATLLIEYDVSVMD 199
Score = 73.6 bits (181), Expect = 8e-16
Identities = 19/97 (19%), Positives = 42/97 (43%), Gaps = 3/97 (3%)
Query: 9 VRLCHILKWTDFDGYGFNLHGEKGKTGQ-YIGKVDEGSPAEAAG-LKEGDHIIEVNSVNI 66
+ ++K + G + G K G+ + + +G A + L GD+I VN +N+
Sbjct: 8 STVVELMK-KEGTTLGLTVSGGIDKDGKPRVSNLRQGGIAARSDQLDVGDYIKAVNGINL 66
Query: 67 CNENHNQVVQRIKAVPDETKLLVVDVASEEYFKSNNI 103
H++++ +K V + L V + +++
Sbjct: 67 AKFRHDEIISLLKNVGERVVLEVEYELPPVSIQGSSV 103
>1uf1_A KIAA1526 protein; PDZ domain, structural genomics, riken structural
genomics/proteomics initiative, RSGI, protein binding;
NMR {Homo sapiens} SCOP: b.36.1.1
Length = 128
Score = 73.3 bits (180), Expect = 2e-16
Identities = 32/94 (34%), Positives = 44/94 (46%), Gaps = 6/94 (6%)
Query: 22 GYGFNLHGEK-GKTGQYIGKVDEGSPAEAAGLKEGDHIIEVNSVNICNENHNQVVQRIKA 80
G + G G YI VD GS AE +GLK GD I+EVN + N H++ V+ +K+
Sbjct: 33 SLGLTIRGGAEYGLGIYITGVDPGSEAEGSGLKVGDQILEVNGRSFLNILHDEAVRLLKS 92
Query: 81 VPDETKLLVVDVASEEYFKS----NNITISSSLP 110
L V DV + ++ SSS P
Sbjct: 93 SRHLI-LTVKDVGRLPHARTTVDETKWIASSSGP 125
>3tsv_A Tight junction protein ZO-1; PDZ, scaffolding, JAM, cell adhesion;
1.99A {Homo sapiens} PDB: 3shu_A
Length = 124
Score = 71.8 bits (176), Expect = 7e-16
Identities = 25/98 (25%), Positives = 44/98 (44%), Gaps = 4/98 (4%)
Query: 2 SEDKTPVVRLCHILKWTDFDGYGFNLHGEKGKTGQYIGKVDEGSPAEAAGLKEGDHIIEV 61
P ++L K D G L G G ++ V E SPA GL+EGD I+ V
Sbjct: 23 HMILRPSMKLVKFRK---GDSVGLRLAGGN-DVGIFVAGVLEDSPAAKEGLEEGDQILRV 78
Query: 62 NSVNICNENHNQVVQRIKAVPDETKLLVVDVASEEYFK 99
N+V+ N + V + +P ++ ++ ++ ++
Sbjct: 79 NNVDFTNIIREEAVLFLLDLPKGEEVTILAQKKKDVYR 116
>2dc2_A GOPC, golgi associated PDZ and coiled-coil motif containing
isoform B; GOPC PDZ domain, structural protein; NMR
{Homo sapiens}
Length = 103
Score = 71.2 bits (175), Expect = 7e-16
Identities = 29/98 (29%), Positives = 44/98 (44%), Gaps = 3/98 (3%)
Query: 2 SEDKTPVVRLCHILKWTDFDGYGFNLHGEKGK-TGQYIGKVDEGSPAEAAG-LKEGDHII 59
+R +LK D +G G ++ G K I ++ G PA+ G L GD I+
Sbjct: 3 KSQGVGPIRKVLLLK-EDHEGLGISITGGKEHGVPILISEIHPGQPADRCGGLHVGDAIL 61
Query: 60 EVNSVNICNENHNQVVQRIKAVPDETKLLVVDVASEEY 97
VN VN+ + H + V + E + VV VA E +
Sbjct: 62 AVNGVNLRDTKHKEAVTILSQQRGEIEFEVVYVALEHH 99
>1uew_A Membrane associated guanylate kinase inverted-2 (MAGI-2);
atrophin-1 interacting protein 1, PDZ domain, structural
genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 114
Score = 70.9 bits (174), Expect = 1e-15
Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 9/79 (11%)
Query: 21 DGYGFNLHGEKGKT--------GQYIGKVDEGSPAEAAG-LKEGDHIIEVNSVNICNENH 71
+G+GF + + IG++ +GSPA+ LK GD I+ VN +I N H
Sbjct: 22 EGFGFVIISSLNRPESGSTITVPHKIGRIIDGSPADRCAKLKVGDRILAVNGQSIINMPH 81
Query: 72 NQVVQRIKAVPDETKLLVV 90
+V+ IK L ++
Sbjct: 82 ADIVKLIKDAGLSVTLRII 100
>1um1_A KIAA1849 protein, RSGI RUH-007; PDZ domain, human cDNA,
structural genomics, riken structural
genomics/proteomics initiative, unknown function; NMR
{Homo sapiens} SCOP: b.36.1.1
Length = 110
Score = 70.4 bits (173), Expect = 1e-15
Identities = 25/74 (33%), Positives = 34/74 (45%), Gaps = 5/74 (6%)
Query: 21 DGYGFNL----HGEKGKTGQYIGKVDEGSPAEAAG-LKEGDHIIEVNSVNICNENHNQVV 75
G G L H G G YI + GSPA A G L GD I+EVN ++ + + V
Sbjct: 19 SGLGMGLIDGMHTHLGAPGLYIQTLLPGSPAAADGRLSLGDRILEVNGSSLLGLGYLRAV 78
Query: 76 QRIKAVPDETKLLV 89
I+ + + LV
Sbjct: 79 DLIRHGGKKMRFLV 92
>2djt_A Unnamed protein product; PDZ domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 104
Score = 69.6 bits (171), Expect = 2e-15
Identities = 20/72 (27%), Positives = 35/72 (48%), Gaps = 4/72 (5%)
Query: 22 GYGFNLHG---EKGKTGQYIGKVDEGSPAEAAG-LKEGDHIIEVNSVNICNENHNQVVQR 77
G+G L G G T + + + PA+ G L+ GD ++ +N + H Q V+R
Sbjct: 23 GFGLTLGGGRDVAGDTPLAVRGLLKDGPAQRCGRLEVGDLVLHINGESTQGLTHAQAVER 82
Query: 78 IKAVPDETKLLV 89
I+A + L++
Sbjct: 83 IRAGGPQLHLVI 94
>2eeh_A PDZ domain-containing protein 7; structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 100
Score = 69.3 bits (170), Expect = 3e-15
Identities = 23/89 (25%), Positives = 42/89 (47%), Gaps = 3/89 (3%)
Query: 2 SEDKTPVVRLCHILKWTDFDGYGFNLHGEKG-KTGQYIGKVDEGSPAEAAGLKEGDHIIE 60
+ ++ + K + GF++ G G ++ KV+EGS AE AGL GD I E
Sbjct: 4 GSSGSDIIHSVRVEK-SPAGRLGFSVRGGSEHGLGIFVSKVEEGSSAERAGLCVGDKITE 62
Query: 61 VNSVNICNENHNQVVQRIKAVPDETKLLV 89
VN +++ + V+ + + ++V
Sbjct: 63 VNGLSLESTTMGSAVKVLTSS-SRLHMMV 90
>1qau_A Neuronal nitric oxide synthase (residues 1-130); beta-finger,
oxidoreductase; 1.25A {Rattus norvegicus} SCOP: b.36.1.1
PDB: 1qav_B
Length = 112
Score = 69.4 bits (170), Expect = 3e-15
Identities = 18/88 (20%), Positives = 40/88 (45%), Gaps = 1/88 (1%)
Query: 22 GYGFNLHGEKGKTGQYIGKVDEGSPAEAAG-LKEGDHIIEVNSVNICNENHNQVVQRIKA 80
G GF + K I + G AE +G ++ GD I+ VN + + +++ ++ ++
Sbjct: 14 GLGFLVKERVSKPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRG 73
Query: 81 VPDETKLLVVDVASEEYFKSNNITISSS 108
+ ET ++++ E + T +
Sbjct: 74 IASETHVVLILRGPEGFTTHLETTFTGD 101
>3o46_A Maguk P55 subfamily member 7; PDZ domain, structural genomics
consortium, SGC, protein BIN; 1.30A {Homo sapiens}
Length = 93
Score = 68.5 bits (168), Expect = 4e-15
Identities = 14/89 (15%), Positives = 41/89 (46%), Gaps = 3/89 (3%)
Query: 9 VRLCHILKWTDFDGYGFNLHGEKGKTGQYIGKVDEGSPAEAAG-LKEGDHIIEVNSVNIC 67
V++ ++K + + G + ++ + ++ G A+ +G + GD + EVN + +
Sbjct: 5 VKIIRLVK--NREPLGATIKKDEQTGAIIVARIMRGGAADRSGLIHVGDELREVNGIPVE 62
Query: 68 NENHNQVVQRIKAVPDETKLLVVDVASEE 96
++ +++Q + ++ + EE
Sbjct: 63 DKRPEEIIQILAQSQGAITFKIIPGSKEE 91
>1b8q_A Protein (neuronal nitric oxide synthase); PDZ domain, NNOS, nitric
oxide synthase, oxidoreductase; NMR {Rattus norvegicus}
SCOP: b.36.1.1
Length = 127
Score = 69.1 bits (169), Expect = 7e-15
Identities = 22/112 (19%), Positives = 47/112 (41%), Gaps = 8/112 (7%)
Query: 22 GYGFNLHGEKGKTGQYIGKVDEGSPAEAAG-LKEGDHIIEVNSVNICNENHNQVVQRIKA 80
G GF + K I + G AE +G ++ GD I+ VN + + +++ ++ ++
Sbjct: 21 GLGFLVKERVSKPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRG 80
Query: 81 VPDETKLLVVDVASEEYFKSNNITISSSLPDIVHLRTPATSGNSNHVEKPSS 132
+ ET ++++ E + T + TP T + + P+
Sbjct: 81 IASETHVVLILRGPEGFTTHLETTFTGD-------GTPKTIRVTQPLGPPTK 125
>1wfv_A Membrane associated guanylate kinase inverted-2; atrophin-1
interacting protein 1, activin receptor interacting
protein 1; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 103
Score = 68.1 bits (167), Expect = 9e-15
Identities = 21/71 (29%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Query: 21 DGYGFNLHGEKG-KTGQYIGKVDEGSPAEAAG-LKEGDHIIEVNSVNICNENHNQVVQRI 78
G+GF++ G + K Y+ ++ E PA G ++ GD IIE+N + + H + ++ I
Sbjct: 22 KGFGFSIRGGREYKMDLYVLRLAEDGPAIRNGRMRVGDQIIEINGESTRDMTHARAIELI 81
Query: 79 KAVPDETKLLV 89
K+ +LL+
Sbjct: 82 KSGGRRVRLLL 92
>1p1d_A PDZ45, glutamate receptor interacting protein; PDZ domain, tandem
repeats, scaffold protein, protein binding; NMR {Rattus
norvegicus} SCOP: b.36.1.1 b.36.1.1 PDB: 1p1e_A 1x5r_A
Length = 196
Score = 70.6 bits (173), Expect = 9e-15
Identities = 18/94 (19%), Positives = 38/94 (40%), Gaps = 5/94 (5%)
Query: 1 MSEDKTPVVRLCHI-LKWTDFDGYGFNLHGEKGKT---GQYIGKVDEGSPAEAAG-LKEG 55
++E P H+ L G + + I + +GS A G L+ G
Sbjct: 98 VAESVIPSSGTFHVKLPKKHSVELGITISSPSSRKPGDPLVISDIKKGSVAHRTGTLELG 157
Query: 56 DHIIEVNSVNICNENHNQVVQRIKAVPDETKLLV 89
D ++ ++++ + + + VQ ++ D KL +
Sbjct: 158 DKLLAIDNIRLDSCSMEDAVQILQQCEDLVKLKI 191
Score = 67.9 bits (166), Expect = 8e-14
Identities = 19/93 (20%), Positives = 38/93 (40%), Gaps = 12/93 (12%)
Query: 10 RLCH------ILKWTDFDGYGFNLHG-----EKGKTGQYIGKVDEGSPAEAAG-LKEGDH 57
++ H +L G+G L G E + I ++ SPAE G L+ GD
Sbjct: 1 QVVHTETTEVVLTADPVTGFGIQLQGSVFATETLSSPPLISYIEADSPAERCGVLQIGDR 60
Query: 58 IIEVNSVNICNENHNQVVQRIKAVPDETKLLVV 90
++ +N + + + Q ++ +K+ +
Sbjct: 61 VMAINGIPTEDSTFEEANQLLRDSSITSKVTLE 93
>2qg1_A Multiple PDZ domain protein; MPDZ, MUPP1, structural genomics,
structural genomics consortium, SGC, signaling protein;
1.40A {Homo sapiens}
Length = 92
Score = 67.3 bits (165), Expect = 1e-14
Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Query: 22 GYGFNLHGEKGKTGQYIGKVDEGSPAEAAG-LKEGDHIIEVNSVNICNENHNQVVQRIKA 80
G G ++ G++ TG ++ + +G A+A G L +GD I+ VN ++ N V +K
Sbjct: 17 GLGLSIVGKRNDTGVFVSDIVKGGIADADGRLMQGDQILMVNGEDVRNATQEAVAALLKC 76
Query: 81 VPDETKLLV 89
L V
Sbjct: 77 SLGTVTLEV 85
>1ihj_A INAD; intermolecular disulfide bond, PDZ domain, signaling
protein; 1.80A {Drosophila melanogaster} SCOP: b.36.1.1
Length = 98
Score = 67.3 bits (165), Expect = 1e-14
Identities = 19/78 (24%), Positives = 31/78 (39%), Gaps = 8/78 (10%)
Query: 21 DGYGFNL-------HGEKGKTGQYIGKVDEGSPAEAAG-LKEGDHIIEVNSVNICNENHN 72
+G + TG +I + SPA G LK GD I+ +N ++ N
Sbjct: 17 KSFGICIVRGEVKDSPNTKTTGIFIKGIVPDSPAHLCGRLKVGDRILSLNGKDVRNSTEQ 76
Query: 73 QVVQRIKAVPDETKLLVV 90
V+ IK + +L +
Sbjct: 77 AVIDLIKEADFKIELEIQ 94
>2ehr_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated to
tight junctions, PATJ; NMR {Homo sapiens}
Length = 117
Score = 67.9 bits (166), Expect = 2e-14
Identities = 25/93 (26%), Positives = 42/93 (45%), Gaps = 12/93 (12%)
Query: 9 VRLCHILKWTDFDGYGFNLHG----------EKGKTGQYIGKVDEGSPAEAAG-LKEGDH 57
R+ I + G ++ G + G +I +V E SPA LK GD
Sbjct: 16 PRIVEIFR-EPNVSLGISIVGGQTVIKRLKNGEELKGIFIKQVLEDSPAGKTNALKTGDK 74
Query: 58 IIEVNSVNICNENHNQVVQRIKAVPDETKLLVV 90
I+EV+ V++ N +H++ V+ IK + +V
Sbjct: 75 ILEVSGVDLQNASHSEAVEAIKNAGNPVVFIVQ 107
>2dkr_A LIN-7 homolog B; LIN-7B, PDZ, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 93
Score = 66.9 bits (164), Expect = 2e-14
Identities = 26/72 (36%), Positives = 41/72 (56%), Gaps = 2/72 (2%)
Query: 21 DGYGFNL-HGEKGKTGQYIGKVDEGSPAEAAG-LKEGDHIIEVNSVNICNENHNQVVQRI 78
+G GFN+ G++ + YI +V G A+ G LK GD ++ VN V++ E H + V+ +
Sbjct: 16 EGLGFNIMGGKEQNSPIYISRVIPGGVADRHGGLKRGDQLLSVNGVSVEGEQHEKAVELL 75
Query: 79 KAVPDETKLLVV 90
KA KL+V
Sbjct: 76 KAAQGSVKLVVR 87
>2vwr_A Ligand of NUMB protein X 2; protein-binding, metal-binding, zinc,
LNX2_human, zinc-finger, polymorphism, ring finger
protein 1; 1.3A {Homo sapiens}
Length = 95
Score = 66.5 bits (163), Expect = 2e-14
Identities = 15/70 (21%), Positives = 27/70 (38%), Gaps = 1/70 (1%)
Query: 21 DGYGFNLHGEKGKTGQYIGKVDEGSPAEAAG-LKEGDHIIEVNSVNICNENHNQVVQRIK 79
+ G L + G +I + EG A G L D ++ +N ++ Q I+
Sbjct: 16 EQLGIKLVRRTDEPGVFILDLLEGGLAAQDGRLSSNDRVLAINGHDLKYGTPELAAQIIQ 75
Query: 80 AVPDETKLLV 89
A + L +
Sbjct: 76 ASGERVNLTI 85
>2cs5_A Tyrosine-protein phosphatase, non-receptor type 4; PDZ domain,
ptpase, structural genomics, NPPSFA; NMR {Homo sapiens}
SCOP: b.36.1.1
Length = 119
Score = 67.6 bits (165), Expect = 2e-14
Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 3/72 (4%)
Query: 22 GYGFNLHGEKG-KTGQYIGKVDEGSPAEAA--GLKEGDHIIEVNSVNICNENHNQVVQRI 78
+GFN+ G K + +V G+PA+ L EGD ++ +N +I H+QVV I
Sbjct: 28 RFGFNVKGGYDQKMPVIVSRVAPGTPADLCVPRLNEGDQVVLINGRDIAEHTHDQVVLFI 87
Query: 79 KAVPDETKLLVV 90
KA + ++
Sbjct: 88 KASCERHSGELM 99
>2csj_A TJP2 protein; PDZ domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Mus musculus} SCOP: b.36.1.1
Length = 117
Score = 67.1 bits (164), Expect = 3e-14
Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 8/75 (10%)
Query: 22 GYGFNL-------HGEKGKTGQYIGKVDEGSPAEAAGLKEGDHIIEVNSVNICNENHNQV 74
G+G + H E G+T I V G PA+ L+E D ++ VN + + H+
Sbjct: 27 GFGIAVSGGRDNPHFENGETSIVISDVLPGGPADG-LLQENDRVVMVNGTPMEDVLHSFA 85
Query: 75 VQRIKAVPDETKLLV 89
VQ+++ ++V
Sbjct: 86 VQQLRKSGKIAAIVV 100
>3gsl_A Disks large homolog 4; PDZ domain, tandem, PSD-95, DLG4, SAP-90,
GLUR6, cell juncti membrane, lipoprotein, membrane,
palmitate, phosphoprotein; 2.05A {Rattus norvegicus}
PDB: 3zrt_A 2ka9_A
Length = 196
Score = 69.0 bits (169), Expect = 3e-14
Identities = 26/83 (31%), Positives = 37/83 (44%), Gaps = 7/83 (8%)
Query: 21 DGYGFNLHGEK------GKTGQYIGKVDEGSPAEAAG-LKEGDHIIEVNSVNICNENHNQ 73
G GF++ G G Y+ K+ EG A G L+ GD I+ VNSV + + H
Sbjct: 111 KGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVGLEDVMHED 170
Query: 74 VVQRIKAVPDETKLLVVDVASEE 96
V +K D L V ++ E
Sbjct: 171 AVAALKNTYDVVYLKVAKPSNAE 193
Score = 66.7 bits (163), Expect = 2e-13
Identities = 21/94 (22%), Positives = 34/94 (36%), Gaps = 7/94 (7%)
Query: 22 GYGFNLHG------EKGKTGQYIGKVDEGSPAEAAG-LKEGDHIIEVNSVNICNENHNQV 74
G GF++ G +I K+ G A G L+ D I+ VN V++ H+
Sbjct: 17 GLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAA 76
Query: 75 VQRIKAVPDETKLLVVDVASEEYFKSNNITISSS 108
V+ +K +L V+ I
Sbjct: 77 VEALKEAGSIVRLYVMRRKPPAEKVMEIKLIKGP 110
>1v5q_A GRIP1 homolog, glutamate receptor interacting protein 1A-L homolog;
PDZ domain, cellular signaling, structural genomics; NMR
{Mus musculus} SCOP: b.36.1.1
Length = 122
Score = 67.2 bits (164), Expect = 3e-14
Identities = 17/76 (22%), Positives = 32/76 (42%), Gaps = 6/76 (7%)
Query: 21 DGYGFNLHGEKGKTGQ-----YIGKVDEGSPAEAAG-LKEGDHIIEVNSVNICNENHNQV 74
G+G L G T I ++ SPAE G L+ GD ++ +N + + +
Sbjct: 27 TGFGIQLQGSVFATETLSSPPLISYIEADSPAERCGVLQIGDRVMAINGIPTEDSTFEEA 86
Query: 75 VQRIKAVPDETKLLVV 90
Q ++ +K+ +
Sbjct: 87 NQLLRDSSITSKVTLE 102
>3nfk_A Tyrosine-protein phosphatase non-receptor type 4; PDZ-PDZ-binding
site complex, protein binding; 1.43A {Homo sapiens} PDB:
3nfl_A 2vph_A
Length = 107
Score = 66.4 bits (162), Expect = 4e-14
Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 3/72 (4%)
Query: 22 GYGFNLHGEKG-KTGQYIGKVDEGSPAEAA--GLKEGDHIIEVNSVNICNENHNQVVQRI 78
+GFN+ G K + +V G+PA+ L EGD ++ +N +I H+QVV I
Sbjct: 30 RFGFNVKGGYDQKMPVIVSRVAPGTPADLCVPRLNEGDQVVLINGRDIAEHTHDQVVLFI 89
Query: 79 KAVPDETKLLVV 90
KA + ++
Sbjct: 90 KASCERHSGELM 101
>3k1r_A Harmonin; protein-protein complex, alternative splicing, coiled
coil, deafness, hearing, non-syndromic deafness,
polymorphism; 2.30A {Homo sapiens} PDB: 2kbq_A 2kbr_A
Length = 192
Score = 68.8 bits (168), Expect = 4e-14
Identities = 20/92 (21%), Positives = 42/92 (45%), Gaps = 2/92 (2%)
Query: 21 DGYGFNLHG-EKGKTGQYIGKVDEGSPAEAAGLKEGDHIIEVNSVNICNENHNQVVQRIK 79
+G G ++ G + G +I + +G A++ GL+ GD I+ +N +I + H +V+ I+
Sbjct: 96 EGLGLSVRGGLEFGCGLFISHLIKGGQADSVGLQVGDEIVRINGYSISSCTHEEVINLIR 155
Query: 80 AVPDETKLLVVDVASEEYFKSNNITISSSLPD 111
+ V + S + ++ D
Sbjct: 156 TE-KTVSIKVRHIGLIPVKSSPDEPLTWQYVD 186
>1v62_A KIAA1719 protein; structural genomics, synaptic transmission,
riken structural genomics/proteomics initiative, RSGI,
protein binding; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 117
Score = 66.7 bits (163), Expect = 4e-14
Identities = 15/92 (16%), Positives = 42/92 (45%), Gaps = 4/92 (4%)
Query: 2 SEDKTPVVRLCHILKWTDFDGYGFNLHG--EKGKTGQYIGKVDEGSPAEAAG-LKEGDHI 58
+ + I+K T G +L + K+ I ++ S + +G L GDHI
Sbjct: 9 TVANASGPLMVEIVK-TPGSALGISLTTTSLRNKSVITIDRIKPASVVDRSGALHPGDHI 67
Query: 59 IEVNSVNICNENHNQVVQRIKAVPDETKLLVV 90
+ ++ ++ + + + + + ++ ++ +L ++
Sbjct: 68 LSIDGTSMEHCSLLEATKLLASISEKVRLEIL 99
>2h2b_A Tight junction protein ZO-1; PDZ domain, phage derived high
affinity ligand, cell adhesio; 1.60A {Homo sapiens}
PDB: 2h2c_A 2h3m_A 2rrm_A
Length = 107
Score = 66.2 bits (162), Expect = 5e-14
Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 8/75 (10%)
Query: 22 GYGFNL-------HGEKGKTGQYIGKVDEGSPAEAAGLKEGDHIIEVNSVNICNENHNQV 74
G+G + H + G+T I V +G PAE L+E D + VN V++ N H
Sbjct: 20 GFGIAISGGRDNPHFQSGETSIVISDVLKGGPAEG-QLQENDRVAMVNGVSMDNVEHAFA 78
Query: 75 VQRIKAVPDETKLLV 89
VQ+++ K+ +
Sbjct: 79 VQQLRKSGKNAKITI 93
>1ujd_A KIAA0559 protein; PDZ domain, structural genomics, human cDNA,
riken structural genomics/proteomics initiative, RSGI,
unknown function; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 117
Score = 66.3 bits (162), Expect = 6e-14
Identities = 21/76 (27%), Positives = 35/76 (46%), Gaps = 7/76 (9%)
Query: 21 DGYGFNLHG------EKGKTGQYIGKVDEGSPAEAAG-LKEGDHIIEVNSVNICNENHNQ 73
+G G + G G+ G YI K+ G AE G L EG ++E N + + ++ + +
Sbjct: 30 NGLGIRIVGGKEIPGHSGEIGAYIAKILPGGSAEQTGKLMEGMQVLEWNGIPLTSKTYEE 89
Query: 74 VVQRIKAVPDETKLLV 89
V I E ++ V
Sbjct: 90 VQSIISQQSGEAEICV 105
>1qav_A Alpha-1 syntrophin (residues 77-171); beta-finger, heterodimer,
membrane protein-oxidoreductase CO; 1.90A {Mus
musculus} SCOP: b.36.1.1 PDB: 1z86_A 2pdz_A 2vrf_A
Length = 90
Score = 65.4 bits (160), Expect = 6e-14
Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 2/71 (2%)
Query: 21 DGYGFNLHGEKG-KTGQYIGKVDEGSPAEAAG-LKEGDHIIEVNSVNICNENHNQVVQRI 78
G G ++ G + K I K+ +G A+ L GD I+ VN ++ + H++ VQ +
Sbjct: 16 GGLGISIKGGRENKMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQAL 75
Query: 79 KAVPDETKLLV 89
K E L V
Sbjct: 76 KKTGKEVVLEV 86
>2dlu_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated
to tight junctions, PATJ; NMR {Homo sapiens}
Length = 111
Score = 65.9 bits (161), Expect = 7e-14
Identities = 20/69 (28%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
Query: 22 GYGFNLHGEKGKTGQYIGKVDEGSPAEAAG-LKEGDHIIEVNSVNICNENHNQVVQRIKA 80
G GF + G K +G + + G A+ G L+ GDHI+++ N+ QV Q ++
Sbjct: 27 GLGFGIVGGKT-SGVVVRTIVPGGLADRDGRLQTGDHILKIGGTNVQGMTSEQVAQVLRN 85
Query: 81 VPDETKLLV 89
+ ++LV
Sbjct: 86 CGNSVRMLV 94
>2lob_A Golgi-associated PDZ and coiled-coil motif-contai protein;
structural protein-hydrolase complex, peptide binding
protei; NMR {Homo sapiens}
Length = 112
Score = 65.2 bits (159), Expect = 1e-13
Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 2/72 (2%)
Query: 21 DGYGFNLHGEKGK-TGQYIGKVDEGSPAEAAG-LKEGDHIIEVNSVNICNENHNQVVQRI 78
+G G ++ G K I ++ G PA+ G L GD I+ VN VN+ + H + V +
Sbjct: 39 EGLGISITGGKEHGVPILISEIHPGQPADRCGGLHVGDAILAVNGVNLRDTKHKEAVTIL 98
Query: 79 KAVPDETKLLVV 90
E + VV
Sbjct: 99 SQQRGEIEFEVV 110
>2d8i_A T-cell lymphoma invasion and metastasis 1 variant; PDZ domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 114
Score = 65.1 bits (158), Expect = 2e-13
Identities = 26/80 (32%), Positives = 35/80 (43%), Gaps = 3/80 (3%)
Query: 3 EDKTPVVRLCHILK-WTDFDGYGFNLHG--EKGKTGQYIGKVDEGSPAEAAGLKEGDHII 59
E V + HI K T D YGF+L E G Y+ V E A GLK GD I+
Sbjct: 10 EICPKVTQSIHIEKSDTAADTYGFSLSSVEEDGIRRLYVNSVKETGLASKKGLKAGDEIL 69
Query: 60 EVNSVNICNENHNQVVQRIK 79
E+N+ N + + +
Sbjct: 70 EINNRAADALNSSMLKDFLS 89
>1d5g_A Human phosphatase HPTP1E; protein-peptide complex, hydrolase; NMR
{Homo sapiens} SCOP: b.36.1.1 PDB: 3lnx_A 3lny_A 3pdz_A
1vj6_A 1gm1_A 1ozi_A
Length = 96
Score = 64.1 bits (157), Expect = 2e-13
Identities = 18/73 (24%), Positives = 32/73 (43%), Gaps = 5/73 (6%)
Query: 22 GYGFNLHG----EKGKTGQYIGKVDEGSPAEAAG-LKEGDHIIEVNSVNICNENHNQVVQ 76
G ++ G G Y+ V AE+ G + +GD ++ VN V++ H Q V+
Sbjct: 17 SLGISVTGGVNTSVRHGGIYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVE 76
Query: 77 RIKAVPDETKLLV 89
++ LL+
Sbjct: 77 TLRNTGQVVHLLL 89
>2jil_A GRIP1 protein, glutamate receptor interacting protein-1;
endoplasmic reticulum, postsynaptic membrane, membrane,
MEMB protein; 1.5A {Homo sapiens}
Length = 97
Score = 64.2 bits (157), Expect = 2e-13
Identities = 18/75 (24%), Positives = 32/75 (42%), Gaps = 6/75 (8%)
Query: 21 DGYGFNLHG-----EKGKTGQYIGKVDEGSPAEAAG-LKEGDHIIEVNSVNICNENHNQV 74
+ +GF + G I V G PA+ G +K GD ++ V+ + + H +
Sbjct: 14 NTFGFVIRGGAHDDRNKSRPVVITSVRPGGPADREGTIKPGDRLLSVDGIRLLGTTHAEA 73
Query: 75 VQRIKAVPDETKLLV 89
+ +K E LL+
Sbjct: 74 MSILKQCGQEAALLI 88
>2r4h_A Membrane-associated guanylate kinase, WW and PDZ containing protein
1; transferase, STRU genomics, structural genomics
consortium, SGC, ATP-binding; HET: HIS; 2.05A {Homo
sapiens}
Length = 112
Score = 64.7 bits (158), Expect = 2e-13
Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 21 DGYGFNLHG-EKGKTGQYIGKVDEGSPAEAAG-LKEGDHIIEVNSVNICNENHNQVVQRI 78
G+GF+L G + Y+ ++ E PAE +G ++ GD I+E+N N H++ ++ I
Sbjct: 35 KGFGFSLRGGREYNMDLYVLRLAEDGPAERSGKMRIGDEILEINGETTKNMKHSRAIELI 94
Query: 79 KAVPDETKLLV 89
K +L +
Sbjct: 95 KNGGRRVRLFL 105
>1wha_A KIAA0147 protein, scribble; PDZ domain, cellular signaling,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo
sapiens} SCOP: b.36.1.1
Length = 105
Score = 64.3 bits (157), Expect = 2e-13
Identities = 21/77 (27%), Positives = 36/77 (46%), Gaps = 8/77 (10%)
Query: 21 DGYGFNLHG-------EKGKTGQYIGKVDEGSPAEAAG-LKEGDHIIEVNSVNICNENHN 72
G GF++ G G G ++ ++ EG A AG L+ GD ++ +N V++ H+
Sbjct: 18 RGLGFSIAGGKGSTPYRAGDAGIFVSRIAEGGAAHRAGTLQVGDRVLSINGVDVTEARHD 77
Query: 73 QVVQRIKAVPDETKLLV 89
V + A LL+
Sbjct: 78 HAVSLLTAASPTIALLL 94
>1nf3_C PAR-6B; semi-CRIB motif, switch I and II, PDZ domain, GTPase
binding domain, signaling protein; HET: GNP; 2.10A {Mus
musculus} SCOP: b.36.1.1 PDB: 2lc6_A 1ry4_A 1x8s_A
2lc7_A 1rzx_A
Length = 128
Score = 64.9 bits (158), Expect = 3e-13
Identities = 20/93 (21%), Positives = 38/93 (40%), Gaps = 11/93 (11%)
Query: 9 VRLCHILKWTDFDGYGFNL----------HGEKGKTGQYIGKVDEGSPAEAAG-LKEGDH 57
R + K+ GF + HG + G +I ++ G A++ G L D
Sbjct: 30 HRRVRLCKYGTEKPLGFYIRDGSSVRVTPHGLEKVPGIFISRLVPGGLAQSTGLLAVNDE 89
Query: 58 IIEVNSVNICNENHNQVVQRIKAVPDETKLLVV 90
++EVN + + ++ +QV + A + V
Sbjct: 90 VLEVNGIEVSGKSLDQVTDMMIANSRNLIITVR 122
>2edp_A Fragment, shroom family member 4; APX/shroom family member,
KIAA1202 protein, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 100
Score = 63.5 bits (155), Expect = 3e-13
Identities = 15/70 (21%), Positives = 30/70 (42%), Gaps = 3/70 (4%)
Query: 22 GYGFNLHGEKG-KTGQYIGKVDEGSPAEAAG-LKEGDHIIEVNSVNICNENHNQVVQRIK 79
+GF L G + K+++G A + ++ GD ++ +N + + + IK
Sbjct: 22 PWGFTLKGGLEHCEPLTVSKIEDGGKAALSQKMRTGDELVNINGTPLYGS-RQEALILIK 80
Query: 80 AVPDETKLLV 89
KL+V
Sbjct: 81 GSFRILKLIV 90
>2fe5_A Presynaptic protein SAP102; PDZ domain, DLG3, human, structural
genomics, structural GEN consortium, SGC, structural
protein; HET: GOL; 1.10A {Homo sapiens} SCOP: b.36.1.1
PDB: 2x7z_A 2oqs_A 1qlc_A 2i0l_A
Length = 94
Score = 63.5 bits (155), Expect = 4e-13
Identities = 24/76 (31%), Positives = 36/76 (47%), Gaps = 7/76 (9%)
Query: 21 DGYGFNLHG------EKGKTGQYIGKVDEGSPAEAAG-LKEGDHIIEVNSVNICNENHNQ 73
G GF++ G G YI K+ EG A+ G L+ GD ++ VN+ N+ + H +
Sbjct: 14 KGLGFSIAGGIGNQHIPGDNSIYITKIIEGGAAQKDGRLQIGDRLLAVNNTNLQDVRHEE 73
Query: 74 VVQRIKAVPDETKLLV 89
V +K D L V
Sbjct: 74 AVASLKNTSDMVYLKV 89
>3r0h_A INAD, inactivation-NO-after-potential D protein; protein-protein
complex, PDZ domain, peptide binding protein; 2.60A
{Drosophila melanogaster}
Length = 206
Score = 66.1 bits (161), Expect = 4e-13
Identities = 15/89 (16%), Positives = 26/89 (29%), Gaps = 3/89 (3%)
Query: 3 EDKTPVVRLCHILKWTDFDGYGFNLHGEKGKTGQYIGKVDEGSPAEAAG-LKEGDHIIEV 61
D + + L G +L + G I + +G E L+ GD I +
Sbjct: 107 ADPPELEKFNVDLMKKAGKELGLSLSPNE--IGCTIADLIQGQYPEIDSKLQRGDIITKF 164
Query: 62 NSVNICNENHNQVVQRIKAVPDETKLLVV 90
N + K + + V
Sbjct: 165 NGDALEGLPFQVCYALFKGANGKVSMEVT 193
Score = 54.9 bits (132), Expect = 4e-09
Identities = 19/90 (21%), Positives = 32/90 (35%), Gaps = 6/90 (6%)
Query: 22 GYGFNLHG---EKGKTGQYIGKVDEGSPAEAAG-LKEGDHIIEVN--SVNICNENHNQVV 75
G + G TG I V A LK DHI ++N +++ + +V
Sbjct: 30 PMGVIVCGGKNNHVTTGCVITHVYPEGQVAADKRLKIFDHICDINGTPIHVGSMTTLKVH 89
Query: 76 QRIKAVPDETKLLVVDVASEEYFKSNNITI 105
Q ++ L V A + N+ +
Sbjct: 90 QLFHTTYEKAVTLTVFRADPPELEKFNVDL 119
>2daz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated to
tight junctions, PATJ; NMR {Homo sapiens}
Length = 124
Score = 64.0 bits (156), Expect = 4e-13
Identities = 18/71 (25%), Positives = 36/71 (50%), Gaps = 3/71 (4%)
Query: 22 GYGFNLHG--EKGKTGQYIGKVDEGSPAEAAG-LKEGDHIIEVNSVNICNENHNQVVQRI 78
G G +L G ++ + ++ ++ PA A G ++ GD ++E+N+ + +H I
Sbjct: 37 GLGLSLAGNKDRSRMSIFVVGINPEGPAAADGRMRIGDELLEINNQILYGRSHQNASAII 96
Query: 79 KAVPDETKLLV 89
K P + KL+
Sbjct: 97 KTAPSKVKLVF 107
>1wf8_A Neurabin-I; PDZ domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: b.36.1.1
Length = 107
Score = 63.5 bits (155), Expect = 4e-13
Identities = 14/69 (20%), Positives = 29/69 (42%), Gaps = 1/69 (1%)
Query: 22 GYGFNLHGEKGKTGQYIGKVDEGSPAEAAG-LKEGDHIIEVNSVNICNENHNQVVQRIKA 80
G G K G ++ V EG A+ G ++ D I+EV+ +++ N ++
Sbjct: 28 GMGVGADAGLEKLGIFVKTVTEGGAAQRDGRIQVNDQIVEVDGISLVGVTQNFAATVLRN 87
Query: 81 VPDETKLLV 89
+ ++
Sbjct: 88 TKGNVRFVI 96
>2fcf_A Multiple PDZ domain protein; adaptor molecule, protein linker,
structural genomics, struc genomics consortium, SGC,
structural protein; 1.76A {Homo sapiens} SCOP: b.36.1.1
Length = 103
Score = 63.1 bits (154), Expect = 5e-13
Identities = 23/85 (27%), Positives = 39/85 (45%), Gaps = 11/85 (12%)
Query: 21 DGYGFNLHG----------EKGKTGQYIGKVDEGSPAEAAG-LKEGDHIIEVNSVNICNE 69
G ++ G + G +I V E SPA G LK GD I+EV+ +++ +
Sbjct: 16 KSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDA 75
Query: 70 NHNQVVQRIKAVPDETKLLVVDVAS 94
+H Q V+ I+ + +V + S
Sbjct: 76 SHEQAVEAIRKAGNPVVFMVQSIIS 100
>2jik_A Synaptojanin-2 binding protein; transmembrane, outer membrane,
mitochondria distribution, PDZ, membrane, scaffold,
mitochondrion, membrane protein; 1.35A {Homo sapiens}
PDB: 2jin_A
Length = 101
Score = 63.1 bits (154), Expect = 5e-13
Identities = 22/76 (28%), Positives = 32/76 (42%), Gaps = 7/76 (9%)
Query: 21 DGYGFNLHG------EKGKTGQYIGKVDEGSPAEAAG-LKEGDHIIEVNSVNICNENHNQ 73
G GFN+ G +G Y+ ++ E A G L+EGD I+ VN ++ N H
Sbjct: 18 SGLGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILSVNGQDLKNLLHQD 77
Query: 74 VVQRIKAVPDETKLLV 89
V + L V
Sbjct: 78 AVDLFRNAGYAVSLRV 93
>1q7x_A PDZ2B domain of PTP-BAS (HPTP1E); phosphatase, structural
proteomics in europe, spine, structural genomics,
hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 108
Score = 63.1 bits (154), Expect = 6e-13
Identities = 18/79 (22%), Positives = 33/79 (41%), Gaps = 10/79 (12%)
Query: 21 DGYGFNLHGEKGKTGQ---------YIGKVDEGSPAEAAG-LKEGDHIIEVNSVNICNEN 70
+ G ++ K G Y+ V AE+ G + +GD ++ VN V++
Sbjct: 20 NSLGISVTVLFDKGGVNTSVRHGGIYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEGAT 79
Query: 71 HNQVVQRIKAVPDETKLLV 89
H Q V+ ++ LL+
Sbjct: 80 HKQAVETLRNTGQVVHLLL 98
>3axa_A Afadin, nectin-3, protein AF-6; PDZ domain, fusion protein, cell
adhesion; 2.78A {Mus musculus} PDB: 1xz9_A 2exg_A*
1t2m_A 2ain_A
Length = 106
Score = 63.1 bits (154), Expect = 6e-13
Identities = 15/74 (20%), Positives = 31/74 (41%), Gaps = 5/74 (6%)
Query: 21 DGYGFNLHG----EKGKTGQYIGKVDEGSPAEAAG-LKEGDHIIEVNSVNICNENHNQVV 75
+G G ++ + K G Y+ V +G A+ G L GD ++ V+ ++ + +
Sbjct: 21 NGMGLSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQLLSVDGRSLVGLSQERAA 80
Query: 76 QRIKAVPDETKLLV 89
+ + L V
Sbjct: 81 ELMTRTSSVVTLEV 94
>2i1n_A Discs, large homolog 3; DLG3, PDZ, PDZ domain, signal
transduction, structural genom structural genomics
consortium, SGC, signaling protein; 1.85A {Homo
sapiens} PDB: 2wl7_A 3rl7_B 1rgr_A* 1kef_A 1zok_A
1iu0_A 1iu2_A
Length = 102
Score = 62.7 bits (153), Expect = 8e-13
Identities = 20/76 (26%), Positives = 34/76 (44%), Gaps = 7/76 (9%)
Query: 21 DGYGFNLHG------EKGKTGQYIGKVDEGSPAEAAG-LKEGDHIIEVNSVNICNENHNQ 73
G GF++ G G +I K+ G A G L D ++ VN V++ H++
Sbjct: 15 SGLGFSIAGGIDNPHVPDDPGIFITKIIPGGAAAMDGRLGVNDCVLRVNEVDVSEVVHSR 74
Query: 74 VVQRIKAVPDETKLLV 89
V+ +K +L+V
Sbjct: 75 AVEALKEAGPVVRLVV 90
>2qkv_A Inactivation-NO-after-potential D protein; PDZ domain,
scaffolding protein, membrane, sensory transduction,
vision; 1.55A {Drosophila melanogaster} PDB: 2qkt_A
2qku_A
Length = 96
Score = 62.3 bits (152), Expect = 8e-13
Identities = 13/70 (18%), Positives = 22/70 (31%), Gaps = 3/70 (4%)
Query: 22 GYGFNLHGEKGKTGQYIGKVDEGSPAEAAG-LKEGDHIIEVNSVNICNENHNQVVQRIKA 80
G +L + G I + +G E L+ GD I + N + K
Sbjct: 21 ELGLSLSP--NEIGCTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGLPFQVSYALFKG 78
Query: 81 VPDETKLLVV 90
+ + V
Sbjct: 79 ANGKVSMEVT 88
>2awx_A Synapse associated protein 97; membrane protein, synaptic
signaling, trafficking protein; HET: HIS; 1.80A {Rattus
norvegicus} PDB: 2g2l_A 2awu_A 2aww_A 3rl8_A
Length = 105
Score = 62.8 bits (153), Expect = 9e-13
Identities = 24/76 (31%), Positives = 35/76 (46%), Gaps = 7/76 (9%)
Query: 21 DGYGFNLHG------EKGKTGQYIGKVDEGSPAEAAG-LKEGDHIIEVNSVNICNENHNQ 73
G GF++ G G Y+ K+ EG A G L+ GD ++ VNSV++ H +
Sbjct: 14 KGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNSVSLEEVTHEE 73
Query: 74 VVQRIKAVPDETKLLV 89
V +K D L V
Sbjct: 74 AVTALKNTSDFVYLKV 89
>2dmz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated to
tight junctions, PATJ; NMR {Homo sapiens}
Length = 129
Score = 63.2 bits (154), Expect = 9e-13
Identities = 19/76 (25%), Positives = 32/76 (42%), Gaps = 7/76 (9%)
Query: 22 GYGFNLHG------EKGKTGQYIGKVDEGSPAEAAG-LKEGDHIIEVNSVNICNENHNQV 74
G + G +G Y+ V GS A G ++ D I+ V+ VNI ++ V
Sbjct: 28 SLGIRIVGYVGTSHTGEASGIYVKSVIPGSAAYHNGHIQVNDKIVAVDGVNIQGFANHDV 87
Query: 75 VQRIKAVPDETKLLVV 90
V+ ++ L +V
Sbjct: 88 VEVLRNAGQVVHLTLV 103
>2opg_A Multiple PDZ domain protein; structural protein, structural
genomics, structural genomics consortium, SGC; 1.50A
{Homo sapiens}
Length = 98
Score = 62.3 bits (152), Expect = 1e-12
Identities = 18/72 (25%), Positives = 33/72 (45%), Gaps = 3/72 (4%)
Query: 21 DGYGFNLHG--EKGKTGQYIGKVDEGSPAEAAG-LKEGDHIIEVNSVNICNENHNQVVQR 77
G G ++ G + I +V E A G L GD I+EVN +++ H++ +
Sbjct: 15 TGLGLSIVGGSDTLLGAIIIHEVYEEGAACKDGRLWAGDQILEVNGIDLRKATHDEAINV 74
Query: 78 IKAVPDETKLLV 89
++ P +L +
Sbjct: 75 LRQTPQRVRLTL 86
>2dm8_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated
to tight junctions, PATJ; NMR {Homo sapiens}
Length = 116
Score = 62.4 bits (152), Expect = 1e-12
Identities = 21/72 (29%), Positives = 36/72 (50%), Gaps = 3/72 (4%)
Query: 21 DGYGFNLHG--EKGKTGQYIGKVDEGSPAEAAG-LKEGDHIIEVNSVNICNENHNQVVQR 77
G G ++ G + I +V E A G L GD I+EVN V++ N +H + +
Sbjct: 28 SGLGLSIVGGKDTPLNAIVIHEVYEEGAAARDGRLWAGDQILEVNGVDLRNSSHEEAITA 87
Query: 78 IKAVPDETKLLV 89
++ P + +L+V
Sbjct: 88 LRQTPQKVRLVV 99
>1wif_A RSGI RUH-020, riken cDNA 4930408O21; PDZ domain, structural
genomics, mouse cDNA, riken structural
genomics/proteomics initiative; NMR {Mus musculus} SCOP:
b.36.1.1
Length = 126
Score = 63.0 bits (153), Expect = 1e-12
Identities = 11/71 (15%), Positives = 25/71 (35%), Gaps = 5/71 (7%)
Query: 22 GYGFNLHGEKGKTGQYIGKVDEGSPAEAAG-LKEGDHIIEVNSVNICNENHNQVVQRIKA 80
G G + I + A + G L+ GD +I V N+ + ++ ++
Sbjct: 39 GLGLVVIQ--NGPYLQISHLINKGAAASDGILQPGDVLISVGHANVLGYTLREFLKLLQN 96
Query: 81 VP--DETKLLV 89
+ ++
Sbjct: 97 ITIGTVLQIKA 107
>2iwo_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP-1, HOST-virus
interaction, structural genomics consortium,
synaptosome, tight junction; 1.7A {Homo sapiens} PDB:
2iwp_A
Length = 120
Score = 62.4 bits (152), Expect = 1e-12
Identities = 16/75 (21%), Positives = 27/75 (36%), Gaps = 5/75 (6%)
Query: 21 DGYGFNLHG----EKGKTGQYIGKVDEGSPAEAAG-LKEGDHIIEVNSVNICNENHNQVV 75
D G ++ G G +I + A L+ GD I+ + + H Q V
Sbjct: 36 DSLGISIAGGVGSPLGDVPIFIAMMHPTGVAAQTQKLRVGDRIVTICGTSTEGMTHTQAV 95
Query: 76 QRIKAVPDETKLLVV 90
+K ++ VV
Sbjct: 96 NLLKNASGSIEMQVV 110
>2iwn_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1,
HOST-virus interaction, structural genomics consortium,
synaptosome, tight junction; 1.35A {Homo sapiens}
Length = 97
Score = 61.9 bits (151), Expect = 1e-12
Identities = 16/75 (21%), Positives = 32/75 (42%), Gaps = 6/75 (8%)
Query: 21 DGYGFNLHG-----EKGKTGQYIGKVDEGSPAEAAG-LKEGDHIIEVNSVNICNENHNQV 74
G G + G + +G ++ + + S E G ++ GD II V+ N+ + Q
Sbjct: 15 QGLGITIAGYIGDKKLEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQA 74
Query: 75 VQRIKAVPDETKLLV 89
V+ ++ L +
Sbjct: 75 VEVLRHTGQTVLLTL 89
>3kzd_A TIAM-1, T-lymphoma invasion and metastasis-inducing prote; PDZ,
cell junction, cell adhesion, signaling protein,
nucleotide exchange factor; 1.30A {Homo sapiens} PDB:
3kze_A
Length = 94
Score = 61.9 bits (150), Expect = 1e-12
Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
Query: 21 DGYGFNLHG--EKGKTGQYIGKVDEGSPAEAAGLKEGDHIIEVNSVNICNENHNQVVQRI 78
D YGF+L E G Y+ V E A GLK GD I+E+N+ N + + +
Sbjct: 20 DTYGFSLSSVEEDGIRRLYVNSVKETGLASKKGLKAGDEILEINNRAADALNSSMLKDFL 79
Query: 79 K 79
Sbjct: 80 S 80
>2eno_A Synaptojanin-2-binding protein; mitochondrial outer membrane
protein 25, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 120
Score = 62.5 bits (152), Expect = 2e-12
Identities = 22/76 (28%), Positives = 32/76 (42%), Gaps = 7/76 (9%)
Query: 21 DGYGFNLHG------EKGKTGQYIGKVDEGSPAEAAG-LKEGDHIIEVNSVNICNENHNQ 73
G GFN+ G +G Y+ ++ E A G L+EGD I+ VN ++ N H
Sbjct: 28 SGLGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILSVNGQDLKNLLHQD 87
Query: 74 VVQRIKAVPDETKLLV 89
V + L V
Sbjct: 88 AVDLFRNAGYAVSLRV 103
>2jre_A C60-1 PDZ domain peptide; de novo protein; NMR {Synthetic}
Length = 108
Score = 62.0 bits (151), Expect = 2e-12
Identities = 19/83 (22%), Positives = 37/83 (44%), Gaps = 7/83 (8%)
Query: 14 ILKWTDFDGYGFNLHG------EKGKTGQYIGKVDEGSPAEAAG-LKEGDHIIEVNSVNI 66
+ + D G ++ G TG Y+ + GS A G ++ D I+ V+ VN+
Sbjct: 18 LFREKDTSSLGISISGMRDQSTTGEATGIYVKSLIPGSAAALDGRIEPNDKILRVDDVNV 77
Query: 67 CNENHNQVVQRIKAVPDETKLLV 89
+ VV+ ++ + +LL+
Sbjct: 78 QGMAQSDVVEVLRNAGNPVRLLL 100
>2fne_A Multiple PDZ domain protein; structural protein, structural
genomics, SGC, structural genomics consortium, unknown
function; 1.83A {Homo sapiens} SCOP: b.36.1.1
Length = 117
Score = 62.0 bits (151), Expect = 2e-12
Identities = 23/75 (30%), Positives = 32/75 (42%), Gaps = 5/75 (6%)
Query: 21 DGYGFNLHG----EKGKTGQYIGKVDEGSPAEAAG-LKEGDHIIEVNSVNICNENHNQVV 75
DG GF++ G G Y+ V A G LK GD II VN ++ H + V
Sbjct: 36 DGLGFSIVGGYGSPHGDLPIYVKTVFAKGAASEDGRLKRGDQIIAVNGQSLEGVTHEEAV 95
Query: 76 QRIKAVPDETKLLVV 90
+K L+V+
Sbjct: 96 AILKRTKGTVTLMVL 110
>1n7e_A AMPA receptor interacting protein GRIP; PDZ, protein binding;
1.50A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1n7f_A
Length = 97
Score = 61.6 bits (150), Expect = 2e-12
Identities = 13/71 (18%), Positives = 30/71 (42%), Gaps = 2/71 (2%)
Query: 22 GYGFNLHGEKGKTGQ-YIGKVDEGSPAEAAG-LKEGDHIIEVNSVNICNENHNQVVQRIK 79
G + G + I + +G AE G + GD I+ +NS ++ + ++ + ++
Sbjct: 17 PLGITISGTEEPFDPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQ 76
Query: 80 AVPDETKLLVV 90
+ L +
Sbjct: 77 MAGETVTLKIK 87
>1x6d_A Interleukin-16; PDZ domain, lymphocyte chemoattractant factor
(LCF), structural genomics, NPPSFA; NMR {Homo sapiens}
SCOP: b.36.1.2
Length = 119
Score = 62.1 bits (151), Expect = 2e-12
Identities = 14/80 (17%), Positives = 36/80 (45%), Gaps = 3/80 (3%)
Query: 14 ILKWTDFDGYGFNLHG--EKGKTGQYIGKVDEGSPAEAAG-LKEGDHIIEVNSVNICNEN 70
IL + G GF+L G + + +V A G +++G+ ++ +N ++
Sbjct: 20 ILHKEEGAGLGFSLAGGADLENKVITVHRVFPNGLASQEGTIQKGNEVLSINGKSLKGTT 79
Query: 71 HNQVVQRIKAVPDETKLLVV 90
H+ + ++ + + ++V
Sbjct: 80 HHDALAILRQAREPRQAVIV 99
>1uhp_A Hypothetical protein KIAA1095; PDZ domain, semaphorin cytoplasmic
domain associated protein, structural genomics; NMR
{Homo sapiens} SCOP: b.36.1.1
Length = 107
Score = 61.6 bits (150), Expect = 2e-12
Identities = 21/80 (26%), Positives = 34/80 (42%), Gaps = 10/80 (12%)
Query: 21 DGYGFNLHG---------EKGKTGQYIGKVDEGSPAEAAG-LKEGDHIIEVNSVNICNEN 70
GFN+ G G ++ K+ + PA G L+ D IIEVN ++
Sbjct: 19 GSLGFNIIGGRPSVDNHDGSSSEGIFVSKIVDSGPAAKEGGLQIHDRIIEVNGRDLSRAT 78
Query: 71 HNQVVQRIKAVPDETKLLVV 90
H+Q V+ K + + V+
Sbjct: 79 HDQAVEAFKTAKEPIVVQVL 98
>1wfg_A Regulating synaptic membrane exocytosis protein 2; PDZ domain,
RAB3-interacting molecule, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
SCOP: b.36.1.1 PDB: 2css_A 1zub_A
Length = 131
Score = 62.1 bits (151), Expect = 2e-12
Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 6/76 (7%)
Query: 21 DGYGFNLHG----EKGKTGQYIGKVDEGSPAEAAG-LKEGDHIIEVNSVNICNENHNQVV 75
G + G E G+ +I KV +GS A+ G L+ GD ++E N + +V
Sbjct: 48 AMLGLKVVGGKMTESGRLCAFITKVKKGSLADTVGHLRPGDEVLEWNGRLLQGATFEEVY 107
Query: 76 QRIKAVPDETKL-LVV 90
I E ++ LVV
Sbjct: 108 NIILESKPEPQVELVV 123
>1va8_A Maguk P55 subfamily member 5; PDZ domain, palmitoylated 5, PALS1
protein, structural genomics, riken structural
genomics/proteomics initiative; NMR {Mus musculus} SCOP:
b.36.1.1
Length = 113
Score = 61.7 bits (150), Expect = 3e-12
Identities = 20/83 (24%), Positives = 39/83 (46%), Gaps = 4/83 (4%)
Query: 9 VRLCHILKWTDFDGYGFNLHGEKGKTGQYIGKVDEGSPAEAAG-LKEGDHIIEVNSVNIC 67
V++ I K D G + E I ++ +G AE +G L EGD ++E+N + I
Sbjct: 26 VKIVRIEKARD-IPLGATVRNEMD--SVIISRIVKGGAAEKSGLLHEGDEVLEINGIEIR 82
Query: 68 NENHNQVVQRIKAVPDETKLLVV 90
++ N+V + + +++
Sbjct: 83 GKDVNEVFDLLSDMHGTLTFVLI 105
>2xkx_A Disks large homolog 4; structural protein, scaffold protein,
membrane associated GU kinase; 22.9A {Rattus norvegicus}
Length = 721
Score = 66.1 bits (160), Expect = 3e-12
Identities = 30/226 (13%), Positives = 67/226 (29%), Gaps = 15/226 (6%)
Query: 22 GYGFNLHGEK------GKTGQYIGKVDEGSPAEAAG-LKEGDHIIEVNSVNICNENHNQV 74
G GF++ G +I K+ G A G L+ D I+ VN V++ H+
Sbjct: 71 GLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAA 130
Query: 75 VQRIKAVPDETKLLVVDVASEEYFKSNNITISSSLPDIVHLRTPATSGNSNHVEK----- 129
V+ +K +L V+ I + + +
Sbjct: 131 VEALKEAGSIVRLYVMRRKPPAEKVMEIKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTK 190
Query: 130 --PSSEAASEEYFKSNNITISSSLPDIVHLR-TPATSGNSNHVEKPSSEESNNSTNQSLT 186
A + + + ++ + + + A + N + + + S
Sbjct: 191 IIEGGAAHKDGRLQIGDKILAVNSVGLEDVMHEDAVAALKNTYDVVYLKVAKPSNAYLSD 250
Query: 187 NNTPTPTTNTNNTTNHENQNNLNLNMSAKELRAKLASRKKYDPKKD 232
+ P T + + ++ + + S ++Y P
Sbjct: 251 SYAPPDITTSYSQHLDNEISHSSYLGTDYPTAMTPTSPRRYSPVAK 296
Score = 62.2 bits (150), Expect = 6e-11
Identities = 32/130 (24%), Positives = 49/130 (37%), Gaps = 3/130 (2%)
Query: 2 SEDKTPVVRLCHILKWTDFDGYGFNLHGEKGKTGQYIGKVDEGSPAEAAG-LKEGDHIIE 60
ED R I + G GFN+ G + G +I + G PA+ +G L++GD I+
Sbjct: 301 EEDIPREPRRIVIHR--GSTGLGFNIVGGEDGEGIFISFILAGGPADLSGELRKGDQILS 358
Query: 61 VNSVNICNENHNQVVQRIKAVPDETKLLVVDVASEEYFKSNNITISSSLPDIVHLRTPAT 120
VN V++ N +H Q +K ++ E I L +
Sbjct: 359 VNGVDLRNASHEQAAIALKNAGQTVTIIAQYKPEEYSRFEAKIHDLREQLMNSSLGSGTA 418
Query: 121 SGNSNHVEKP 130
S SN
Sbjct: 419 SLRSNPKRGF 428
Score = 45.3 bits (106), Expect = 2e-05
Identities = 29/146 (19%), Positives = 46/146 (31%), Gaps = 7/146 (4%)
Query: 21 DGYGFNLHGEKG------KTGQYIGKVDEGSPAEAAG-LKEGDHIIEVNSVNICNENHNQ 73
G GF++ G G Y+ K+ EG A G L+ GD I+ VNSV + + H
Sbjct: 165 KGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVGLEDVMHED 224
Query: 74 VVQRIKAVPDETKLLVVDVASEEYFKSNNITISSSLPDIVHLRTPATSGNSNHVEKPSSE 133
V +K D L V ++ S ++ + S +
Sbjct: 225 AVAALKNTYDVVYLKVAKPSNAYLSDSYAPPDITTSYSQHLDNEISHSSYLGTDYPTAMT 284
Query: 134 AASEEYFKSNNITISSSLPDIVHLRT 159
S + + R
Sbjct: 285 PTSPRRYSPVAKDLLGEEDIPREPRR 310
>2la8_A Inactivation-NO-after-potential D protein, KON-TI peptide;
peptide binding protein; NMR {Drosophila melanogaster}
Length = 106
Score = 61.2 bits (149), Expect = 3e-12
Identities = 13/70 (18%), Positives = 22/70 (31%), Gaps = 3/70 (4%)
Query: 22 GYGFNLHGEKGKTGQYIGKVDEGSPAEAAG-LKEGDHIIEVNSVNICNENHNQVVQRIKA 80
G +L + G I + +G E L+ GD I + N + K
Sbjct: 15 ELGLSLSP--NEIGCTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGLPFQVCYALFKG 72
Query: 81 VPDETKLLVV 90
+ + V
Sbjct: 73 ANGKVSMEVT 82
>2iwq_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, membrane,
HOST- interaction, structural genomics consortium,
synaptosome, T junction; 1.80A {Homo sapiens}
Length = 123
Score = 61.7 bits (150), Expect = 3e-12
Identities = 22/79 (27%), Positives = 37/79 (46%), Gaps = 11/79 (13%)
Query: 22 GYGFNLHG----------EKGKTGQYIGKVDEGSPAEAAG-LKEGDHIIEVNSVNICNEN 70
G ++ G + G +I V E SPA G LK GD I+EV+ +++ + +
Sbjct: 37 SLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDAS 96
Query: 71 HNQVVQRIKAVPDETKLLV 89
H Q V+ I+ + +V
Sbjct: 97 HEQAVEAIRKAGNPVVFMV 115
>3cbz_A Dishevelled-2; PDZ domain, phage derived high affinity ligand,
cytoplasm, developmental protein, phosphoprotein, WNT
signaling pathway; 1.38A {Homo sapiens} PDB: 3cby_A
3cc0_A 3cbx_A 2rey_A 2f0a_A 1l6o_A 3fy5_A 2kaw_A* 1mc7_A
Length = 108
Score = 60.9 bits (148), Expect = 4e-12
Identities = 23/91 (25%), Positives = 46/91 (50%), Gaps = 4/91 (4%)
Query: 21 DGYGFNLHG---EKGKTGQYIGKVDEGSPAEAAG-LKEGDHIIEVNSVNICNENHNQVVQ 76
+ G ++ G E+G G YIG + +G A G ++ GD +++VN +N N +++ V+
Sbjct: 17 NFLGISIVGQSNERGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDMNFENMSNDDAVR 76
Query: 77 RIKAVPDETKLLVVDVASEEYFKSNNITISS 107
++ + + +V+ VA N + I
Sbjct: 77 VLRDIVHKPGPIVLTVAKSGGGSGNEVWIDG 107
>2g5m_B Neurabin-2; spinophilin, PDZ domain, CNS, synaptic transmission,
protein binding; NMR {Rattus norvegicus}
Length = 113
Score = 61.2 bits (149), Expect = 4e-12
Identities = 12/69 (17%), Positives = 27/69 (39%), Gaps = 1/69 (1%)
Query: 22 GYGFNLHGEKGKTGQYIGKVDEGSPAEAAG-LKEGDHIIEVNSVNICNENHNQVVQRIKA 80
G G K G ++ V EG A G ++ D ++EV+ ++ + ++
Sbjct: 23 GMGAGADMGLEKLGIFVKTVTEGGAAHRDGRIQVNDLLVEVDGTSLVGVTQSFAASVLRN 82
Query: 81 VPDETKLLV 89
+ ++
Sbjct: 83 TKGRVRFMI 91
>1i16_A Interleukin 16, LCF; cytokine, lymphocyte chemoattractant factor,
PDZ domain; NMR {Homo sapiens} SCOP: b.36.1.2
Length = 130
Score = 61.4 bits (149), Expect = 5e-12
Identities = 18/75 (24%), Positives = 35/75 (46%), Gaps = 5/75 (6%)
Query: 21 DGYGFNLHG----EKGKTGQYIGKVDEGSPAEAAG-LKEGDHIIEVNSVNICNENHNQVV 75
G GF+L G G I ++ +G+ +E + ++ GD I+++ + +
Sbjct: 40 AGLGFSLEGGKGSLHGDKPLTINRIFKGAASEQSETVQPGDEILQLGGTAMQGLTRFEAW 99
Query: 76 QRIKAVPDETKLLVV 90
IKA+PD +V+
Sbjct: 100 NIIKALPDGPVTIVI 114
>2koj_A Partitioning defective 3 homolog; PDZ domain, structural
genomics, alternative splicing, cell cycle, cell
division, cell junction, coiled coil; NMR {Mus
musculus} PDB: 2ogp_A
Length = 111
Score = 60.8 bits (148), Expect = 5e-12
Identities = 21/76 (27%), Positives = 37/76 (48%), Gaps = 6/76 (7%)
Query: 21 DGYGFNLHG----EKGKTGQYIGKVDEGSPAEAAG-LKEGDHIIEVNSVNICNENHNQVV 75
+G GF++ G Y+ + A G LK GD +IEVN V++ ++ +VV
Sbjct: 22 EGLGFSITSRDVTIGGSAPIYVKNILPRGAAIQDGRLKAGDRLIEVNGVDLAGKSQEEVV 81
Query: 76 QRIKAVPDETKL-LVV 90
+++ E + L+V
Sbjct: 82 SLLRSTKMEGTVSLLV 97
>2q9v_A Membrane-associated guanylate kinase, WW and PDZ containing
protein 1; Cys Ser mutant, S genomics consortium, SGC,
transferase; 2.00A {Homo sapiens}
Length = 90
Score = 60.0 bits (146), Expect = 6e-12
Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 3/72 (4%)
Query: 22 GYGFNLHGEKG-KTGQYIGKVDEGSPAEAAG-LKEGDHIIEVNSVNICNENHNQVVQRIK 79
G+GF + G YIG + A+ G L+ GD +I V+ + ++H VVQ ++
Sbjct: 14 GFGFRILGGNEPGEPIYIGHIVPLGAADTDGRLRSGDELISVDGTPVIGKSHQLVVQLMQ 73
Query: 80 AVPDETKL-LVV 90
+ + L V
Sbjct: 74 QAAKQGHVNLTV 85
>1uep_A Membrane associated guanylate kinase inverted-2 (MAGI-2);
atrophin-1 interacting protein 1, PDZ domain,
structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 103
Score = 60.4 bits (147), Expect = 6e-12
Identities = 17/73 (23%), Positives = 32/73 (43%), Gaps = 3/73 (4%)
Query: 21 DGYGFNLHG-EKGKTGQYIGKVDEGSPAEAAG-LKEGDHIIEVNSVNICNENHNQVVQRI 78
G+GF + G ++ IG V A+ G L GD ++ V+ + + + H V+ +
Sbjct: 20 SGFGFRILGGDEPGQPILIGAVIAMGSADRDGRLHPGDELVYVDGIPVAGKTHRYVIDLM 79
Query: 79 KAVPDETKL-LVV 90
++ L V
Sbjct: 80 HHAARNGQVNLTV 92
>2rcz_A Tight junction protein ZO-1; PDZ, domain-swapping, cell junction,
membrane, phosphorylati domain, protein binding; 1.70A
{Homo sapiens} PDB: 2jwe_A 2osg_A
Length = 81
Score = 59.6 bits (145), Expect = 6e-12
Identities = 14/70 (20%), Positives = 31/70 (44%), Gaps = 6/70 (8%)
Query: 21 DGYGFNLHGEKGKTGQYIGKVDEGSPAEAAG-LKEGDHIIEVNSVNICNENHNQVVQRIK 79
+ YG L ++ ++ + S A G ++EGD ++++N N + I+
Sbjct: 13 EEYGLRLAS-----HIFVKEISQDSLAARDGNIQEGDVVLKINGTVTENMSLTDAKTLIE 67
Query: 80 AVPDETKLLV 89
+ K++V
Sbjct: 68 RSKGKLKMVV 77
>2byg_A Channel associated protein of synapse-110; DLG2, PDZ, PDZ domain,
structural genomics, structural genom consortium, SGC,
phosphorylation; 1.85A {Homo sapiens} SCOP: b.36.1.1
Length = 117
Score = 60.5 bits (147), Expect = 7e-12
Identities = 20/76 (26%), Positives = 35/76 (46%), Gaps = 7/76 (9%)
Query: 21 DGYGFNLHG------EKGKTGQYIGKVDEGSPAEAAG-LKEGDHIIEVNSVNICNENHNQ 73
G GF++ G G Y+ K+ +G A+ G L+ GD ++ VN+ ++ H +
Sbjct: 35 KGLGFSIAGGVGNQHIPGDNSIYVTKIIDGGAAQKDGRLQVGDRLLMVNNYSLEEVTHEE 94
Query: 74 VVQRIKAVPDETKLLV 89
V +K + L V
Sbjct: 95 AVAILKNTSEVVYLKV 110
>2d92_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated to
tight junctions, PATJ; NMR {Homo sapiens}
Length = 108
Score = 60.1 bits (146), Expect = 7e-12
Identities = 19/75 (25%), Positives = 34/75 (45%), Gaps = 6/75 (8%)
Query: 22 GYGFNLHG-----EKGKTGQYIGKVDEGSPAEAAG-LKEGDHIIEVNSVNICNENHNQVV 75
G GF++ + ++ I + AE +G L GD ++ VN + N + + V
Sbjct: 27 GLGFSILDYQDPLDPTRSVIVIRSLVADGVAERSGGLLPGDRLVSVNEYCLDNTSLAEAV 86
Query: 76 QRIKAVPDETKLLVV 90
+ +KAVP L +
Sbjct: 87 EILKAVPPGLVHLGI 101
>3b76_A E3 ubiquitin-protein ligase LNX; PDZ, bound ligand, structural
genomics, structural genomics consortium, SGC,
metal-binding; 1.75A {Homo sapiens}
Length = 118
Score = 60.5 bits (147), Expect = 7e-12
Identities = 14/75 (18%), Positives = 29/75 (38%), Gaps = 5/75 (6%)
Query: 21 DGYGFNLHG----EKGKTGQYIGKVDEGSPAEAAG-LKEGDHIIEVNSVNICNENHNQVV 75
+ G + G + Y+ V+ G G +K GD ++ V+ V + + ++ V
Sbjct: 36 ESLGMTVAGGASHREWDLPIYVISVEPGGVISRDGRIKTGDILLNVDGVELTEVSRSEAV 95
Query: 76 QRIKAVPDETKLLVV 90
+K L +
Sbjct: 96 ALLKRTSSSIVLKAL 110
>2o2t_A Multiple PDZ domain protein; structural protein, structural
genomics, structural genomics consortium, SGC; 2.70A
{Homo sapiens}
Length = 117
Score = 60.1 bits (146), Expect = 1e-11
Identities = 23/84 (27%), Positives = 43/84 (51%), Gaps = 6/84 (7%)
Query: 22 GYGFNLHG----EKGKTGQYIGKVDEGSPAEAAG-LKEGDHIIEVNSVNIC-NENHNQVV 75
G GF++ G +G+ G ++ ++ EGS A G LKE D I+ +N + H Q +
Sbjct: 33 GLGFSVVGLRSENRGELGIFVQEIQEGSVAHRDGRLKETDQILAINGQALDQTITHQQAI 92
Query: 76 QRIKAVPDETKLLVVDVASEEYFK 99
++ D +L++ + +Y+K
Sbjct: 93 SILQKAKDTVQLVIARGSLPQYYK 116
>1uju_A Scribble; PDZ domain, cellular signaling, structural genomics,
riken structural genomics/proteomics initiative, RSGI,
signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 111
Score = 59.7 bits (145), Expect = 1e-11
Identities = 21/82 (25%), Positives = 36/82 (43%), Gaps = 11/82 (13%)
Query: 21 DGYGFNLHG----------EKGKTGQYIGKVDEGSPAEAAG-LKEGDHIIEVNSVNICNE 69
+ G ++ G + G +I KV A G L+ G ++EVN ++
Sbjct: 21 ERLGISIRGGARGHAGNPRDPTDEGIFISKVSPTGAAGRDGRLRVGLRLLEVNQQSLLGL 80
Query: 70 NHNQVVQRIKAVPDETKLLVVD 91
H + VQ +++V D +LV D
Sbjct: 81 THGEAVQLLRSVGDTLTVLVCD 102
>2ejy_A 55 kDa erythrocyte membrane protein; GPC, maguk, PDZ, membrane
protein; NMR {Homo sapiens} PDB: 2ev8_A
Length = 97
Score = 59.3 bits (144), Expect = 1e-11
Identities = 22/89 (24%), Positives = 37/89 (41%), Gaps = 3/89 (3%)
Query: 3 EDKTPVVRLCHILKWTDFDGYGFNLHGEKGKTGQYIGKVDEGSPAEAAG-LKEGDHIIEV 61
+VRL K T+ + G L K + ++ G G L GD I+E+
Sbjct: 7 HHSGHMVRLIQFEKVTE-EPMGICLKLN-EKQSCTVARILHGGMIHRQGSLHVGDEILEI 64
Query: 62 NSVNICNENHNQVVQRIKAVPDETKLLVV 90
N N+ N + +Q+ + +K L V+
Sbjct: 65 NGTNVTNHSVDQLQKAMKETKGMISLKVI 93
>1mfg_A ERB-B2 interacting protein; PDZ domain, protein-peptide complex,
erbin., signaling protein; 1.25A {Homo sapiens} SCOP:
b.36.1.1 PDB: 1mfl_A
Length = 95
Score = 59.3 bits (144), Expect = 1e-11
Identities = 19/77 (24%), Positives = 32/77 (41%), Gaps = 10/77 (12%)
Query: 22 GYGFNLHG---------EKGKTGQYIGKVDEGSPAEAAGLKEGDHIIEVNSVNICNENHN 72
GF++ G G ++ +V PA L+ GD II+ N + N H
Sbjct: 14 ELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPASKL-LQPGDKIIQANGYSFINIEHG 72
Query: 73 QVVQRIKAVPDETKLLV 89
Q V +K + +L++
Sbjct: 73 QAVSLLKTFQNTVELII 89
>2yt7_A Amyloid beta A4 precursor protein-binding family A member 3;
neuron-specific X11L2 protein, neuronal
MUNC18-1-interacting protein 3, MINT-3; NMR {Homo
sapiens}
Length = 101
Score = 59.4 bits (144), Expect = 1e-11
Identities = 18/93 (19%), Positives = 31/93 (33%), Gaps = 5/93 (5%)
Query: 2 SEDKTPVVRLCHILKWTDFDGYGFNLHG---EKGKTGQYIGKVDEGSPAEAAG-LKEGDH 57
S R H+ K +G G L I + G PAE +G L GD
Sbjct: 3 SGSSGDNCREVHLEKRRG-EGLGVALVESGWGSLLPTAVIANLLHGGPAERSGALSIGDR 61
Query: 58 IIEVNSVNICNENHNQVVQRIKAVPDETKLLVV 90
+ +N ++ ++ +T + +
Sbjct: 62 LTAINGTSLVGLPLAACQAAVRETKSQTSVTLS 94
>3gge_A PDZ domain-containing protein GIPC2; structural genomics,
structural genomics consort protein binding; 2.60A {Homo
sapiens}
Length = 95
Score = 59.0 bits (143), Expect = 2e-11
Identities = 16/81 (19%), Positives = 35/81 (43%), Gaps = 2/81 (2%)
Query: 21 DGYGFNLHGEKGKTGQYIGKVDEGSPAEAAG-LKEGDHIIEVNSVNICNENHNQVVQRIK 79
D G + G +I ++ +G ++ + GDHI +N NI H V +++K
Sbjct: 16 DSLGLTITDN-GVGYAFIKRIKDGGVIDSVKTICVGDHIESINGENIVGWRHYDVAKKLK 74
Query: 80 AVPDETKLLVVDVASEEYFKS 100
+ E + + ++ ++
Sbjct: 75 ELKKEELFTMKLIEPKKSSEA 95
>2i04_A Membrane-associated guanylate kinase, WW and PDZ
domain-containing protein 1; PDZ, E6 binding, tumor
suppressor, peptide binding protein; 2.15A {Mus
musculus}
Length = 85
Score = 58.4 bits (142), Expect = 2e-11
Identities = 19/72 (26%), Positives = 34/72 (47%), Gaps = 3/72 (4%)
Query: 22 GYGFNLHG-EKGKTGQYIGKVDEGSPAEAAG-LKEGDHIIEVNSVNICNENHNQVVQRIK 79
G+GF + G ++ I + PA G ++ GD I+ VN + H QVV+ +
Sbjct: 12 GFGFTVVGGDEPDEFLQIKSLVLDGPAALDGKMETGDVIVSVNDTCVLGHTHAQVVKIFQ 71
Query: 80 AVPDETKL-LVV 90
++P + L +
Sbjct: 72 SIPIGASVDLEL 83
>1kwa_A Hcask/LIN-2 protein; PDZ domain, neurexin, syndecan, receptor
clustering, kinase; 1.93A {Homo sapiens} SCOP: b.36.1.1
Length = 88
Score = 58.5 bits (142), Expect = 2e-11
Identities = 18/90 (20%), Positives = 36/90 (40%), Gaps = 4/90 (4%)
Query: 9 VRLCHILKWTDFDGYGFNLHGEKGKTGQYIGKVDEGSPAE-AAGLKEGDHIIEVNSVNIC 67
RL K TD + G L + + ++ G L GD I E+N +++
Sbjct: 2 SRLVQFQKNTD-EPMGITLKMNELN-HCIVARIMHGGMIHRQGTLHVGDEIREINGISVA 59
Query: 68 NENHNQVVQRIKAVPDETKLLVVDVASEEY 97
N+ Q+ + ++ + +V + E+
Sbjct: 60 NQTVEQLQKMLREMRGSITFKIVP-SYREF 88
>1n7t_A 99-MER peptide of densin-180-like protein; PDZ domain, C-terminal
peptide complex, high affnity ligand, signaling
protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2h3l_A
Length = 103
Score = 59.0 bits (143), Expect = 2e-11
Identities = 19/77 (24%), Positives = 32/77 (41%), Gaps = 10/77 (12%)
Query: 22 GYGFNLHG---------EKGKTGQYIGKVDEGSPAEAAGLKEGDHIIEVNSVNICNENHN 72
GF++ G G ++ +V PA L+ GD II+ N + N H
Sbjct: 22 ELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPASKL-LQPGDKIIQANGYSFINIEHG 80
Query: 73 QVVQRIKAVPDETKLLV 89
Q V +K + +L++
Sbjct: 81 QAVSLLKTFQNTVELII 97
>2db5_A INAD-like protein; PDZ domain, hinadl, PALS1- associated tight
junction protein, protein associated to tight junctions,
PATJ, structural genomics; NMR {Homo sapiens}
Length = 128
Score = 59.4 bits (144), Expect = 2e-11
Identities = 20/76 (26%), Positives = 34/76 (44%), Gaps = 6/76 (7%)
Query: 21 DGYGFNLHG----EKGKTGQYIGKVDEGSPAEAAG-LKEGDHIIEVNSVNIC-NENHNQV 74
G GF++ GK ++ V GS A+ LKE D I+ +N + N +H Q
Sbjct: 37 GGLGFSVVALRSQNLGKVDIFVKDVQPGSVADRDQRLKENDQILAINHTPLDQNISHQQA 96
Query: 75 VQRIKAVPDETKLLVV 90
+ ++ +L+V
Sbjct: 97 IALLQQTTGSLRLIVA 112
>3cyy_A Tight junction protein ZO-1; protein-ligand complex, cell
junction, membrane, phosphoprot domain, tight junction,
transmembrane; 2.40A {Homo sapiens}
Length = 92
Score = 58.2 bits (141), Expect = 3e-11
Identities = 15/78 (19%), Positives = 34/78 (43%), Gaps = 6/78 (7%)
Query: 13 HILKWTDFDGYGFNLHGEKGKTGQYIGKVDEGSPAEAAG-LKEGDHIIEVNSVNICNENH 71
++K + YG L ++ ++ + S A G ++EGD ++++N N +
Sbjct: 7 TLVKSAKNEEYGLRLAS-----HIFVKEISQDSLAARDGNIQEGDVVLKINGTVTENMSL 61
Query: 72 NQVVQRIKAVPDETKLLV 89
I+ + K++V
Sbjct: 62 TDAKTLIERSKGKLKMVV 79
>2kom_A Partitioning defective 3 homolog; PAR-3B, PDZ domain, PSI,
structural genomics, alternative splicing, cell cycle,
cell division, cell junction; NMR {Homo sapiens}
Length = 121
Score = 58.9 bits (143), Expect = 3e-11
Identities = 21/76 (27%), Positives = 37/76 (48%), Gaps = 6/76 (7%)
Query: 21 DGYGFNLHG----EKGKTGQYIGKVDEGSPAEAAG-LKEGDHIIEVNSVNICNENHNQVV 75
+G GF++ G Y+ + A G LK GD +IEVN V++ ++ +VV
Sbjct: 41 EGLGFSITSRDVTIGGSAPIYVKNILPRGAAIQDGRLKAGDRLIEVNGVDLVGKSQEEVV 100
Query: 76 QRIKAVPDETKL-LVV 90
+++ E + L+V
Sbjct: 101 SLLRSTKMEGTVSLLV 116
>2gzv_A PRKCA-binding protein; protein kinase C, PDZ domain, structural
genomics, structura genomics consortium, SGC, signaling
protein; 1.12A {Homo sapiens} PDB: 2pku_A
Length = 114
Score = 58.6 bits (142), Expect = 3e-11
Identities = 18/71 (25%), Positives = 32/71 (45%), Gaps = 2/71 (2%)
Query: 21 DGYGFNLHG-EKGKTGQYIGKVDEGSPAEAAG-LKEGDHIIEVNSVNICNENHNQVVQRI 78
+ G ++ G + YI +V + +PA G + GD I VN +I + +V + I
Sbjct: 36 NLIGISIGGGAQYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMI 95
Query: 79 KAVPDETKLLV 89
+ V E +
Sbjct: 96 QEVKGEVTIHY 106
>3suz_A Amyloid beta A4 precursor protein-binding family 2; APP binding;
2.70A {Rattus norvegicus} PDB: 1u3b_A 1u39_A 1x45_A
1u37_A 1u38_A 2yt8_A
Length = 388
Score = 62.3 bits (150), Expect = 4e-11
Identities = 17/76 (22%), Positives = 30/76 (39%), Gaps = 6/76 (7%)
Query: 21 DGYGFNLHGEKGKTGQYIGKVDEGSPAEAAGLKEGDHIIEVNSVNICNENHNQVVQRIKA 80
GF++ I + G AE G++ G IIE+N ++ H ++VQ +
Sbjct: 308 YQLGFSVQN------GIICSLMRGGIAERGGVRVGHRIIEINGQSVVATAHEKIVQALSN 361
Query: 81 VPDETKLLVVDVASEE 96
E + + A
Sbjct: 362 SVGEIHMKTMPAAMFR 377
Score = 49.6 bits (117), Expect = 5e-07
Identities = 15/85 (17%), Positives = 32/85 (37%), Gaps = 4/85 (4%)
Query: 12 CHILKWTDFDGYGFNLHGEKGKTGQ---YIGKVDEGSPAEAAG-LKEGDHIIEVNSVNIC 67
L+ + G + + + + G PA +G L GD I+ +N ++
Sbjct: 207 ELQLEKHKGEILGVVVVESGWGSILPTVILANMMNGGPAARSGKLSIGDQIMSINGTSLV 266
Query: 68 NENHNQVVQRIKAVPDETKLLVVDV 92
IK + ++T++ + V
Sbjct: 267 GLPLATCQGIIKGLKNQTQVKLNIV 291
>3hpk_A Protein interacting with PRKCA 1; oxidized, PDZ domain, kinase,
protein binding; 2.20A {Rattus norvegicus} PDB: 3hpm_A
Length = 125
Score = 58.6 bits (142), Expect = 4e-11
Identities = 18/70 (25%), Positives = 31/70 (44%), Gaps = 2/70 (2%)
Query: 22 GYGFNLHG-EKGKTGQYIGKVDEGSPAEAAG-LKEGDHIIEVNSVNICNENHNQVVQRIK 79
G ++ G + YI +V + +PA G + GD I VN +I + +V + I+
Sbjct: 32 LIGISIGGGAQYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQ 91
Query: 80 AVPDETKLLV 89
V E +
Sbjct: 92 EVKGEVTIHY 101
>1wi4_A Synip, syntaxin binding protein 4; syntaxin4-interacting protein,
STXBP4 protein, structural genomics, NPPSFA; NMR {Mus
musculus} SCOP: b.36.1.1
Length = 109
Score = 57.4 bits (139), Expect = 8e-11
Identities = 16/93 (17%), Positives = 30/93 (32%), Gaps = 4/93 (4%)
Query: 2 SEDKTPVVRLCHILKWTDFDGYGFNLHGEKGKTGQ---YIGKVDEGSPAEAAG-LKEGDH 57
S ++ T G G + G + YI +V G G LK GD
Sbjct: 6 SGSPLDRDPAFRVITVTKETGLGLKILGGINRNEGPLVYIHEVIPGGDCYKDGRLKPGDQ 65
Query: 58 IIEVNSVNICNENHNQVVQRIKAVPDETKLLVV 90
++ +N ++ + + I ++
Sbjct: 66 LVSINKESMIGVSFEEAKSIITRAKLRSESPWE 98
>1ufx_A KIAA1526 protein; PDZ domain, structural genomics, riken
structural genomics/proteomics initiative, RSGI,
protein binding; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 103
Score = 57.0 bits (138), Expect = 9e-11
Identities = 16/74 (21%), Positives = 26/74 (35%), Gaps = 3/74 (4%)
Query: 22 GYGFNLHG--EKGKTGQYIGKVDEGSPAEAAG-LKEGDHIIEVNSVNICNENHNQVVQRI 78
G + G + I + G A G LK G I+EVN + + + H + + I
Sbjct: 18 TLGIAIEGGANTRQPLPRIVTIQRGGSAHNCGQLKVGHVILEVNGLTLRGKEHREAARII 77
Query: 79 KAVPDETKLLVVDV 92
+D
Sbjct: 78 AEAFKTKDRDYIDF 91
>2kpk_A Membrane-associated guanylate kinase, WW and PDZ containing protein
1; PDZ domain, ATP-binding, cell junction, cell
membrane; NMR {Homo sapiens} PDB: 2kpl_A
Length = 129
Score = 57.1 bits (138), Expect = 1e-10
Identities = 19/72 (26%), Positives = 34/72 (47%), Gaps = 3/72 (4%)
Query: 22 GYGFNLHG-EKGKTGQYIGKVDEGSPAEAAG-LKEGDHIIEVNSVNICNENHNQVVQRIK 79
G+GF + G ++ I + PA G ++ GD I+ VN + H QVV+ +
Sbjct: 30 GFGFTVVGGDEPDEFLQIKSLVLDGPAALDGKMETGDVIVSVNDTCVLGHTHAQVVKIFQ 89
Query: 80 AVPDETKL-LVV 90
++P + L +
Sbjct: 90 SIPIGASVDLEL 101
>1ueq_A Membrane associated guanylate kinase inverted-2 (MAGI-2);
atrophin-1 interacting protein 1, PDZ domain, structural
genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 123
Score = 56.3 bits (136), Expect = 3e-10
Identities = 20/73 (27%), Positives = 35/73 (47%), Gaps = 3/73 (4%)
Query: 21 DGYGFNLHG-EKGKTGQYIGKVDEGSPAEAAG-LKEGDHIIEVNSVNICNENHNQVVQRI 78
G+GF + G ++ + V PA G ++ GD I+ +N V + H VV+
Sbjct: 30 MGFGFTIIGGDEPDEFLQVKSVIPDGPAAQDGKMETGDVIVYINEVCVLGHTHADVVKLF 89
Query: 79 KAVPDETKL-LVV 90
++VP + LV+
Sbjct: 90 QSVPIGQSVNLVL 102
>3e17_A Tight junction protein ZO-2; domain swapping, alternative
promoter usage, alternative splicing, cell junction,
cell membrane, disease mutation; 1.75A {Homo sapiens}
Length = 88
Score = 55.0 bits (133), Expect = 3e-10
Identities = 13/63 (20%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Query: 28 HGEKGKTGQYIGKVDEGSPAEAAG-LKEGDHIIEVNSVNICNENHNQVVQRIKAVPDETK 86
+G + + ++ ++ A G L EGD I+++N N + + I+ + +
Sbjct: 15 YGLRLGSQIFVKEMTRTGLATKDGNLHEGDIILKINGTVTENMSLTDARKLIEKSRGKLQ 74
Query: 87 LLV 89
L+V
Sbjct: 75 LVV 77
>3egg_C Spinophilin; PP1, serine/threonine phosphatase, post synapti
density, glutametergic receptors, carbohydrate
metabolism, cycle, cell division; HET: MES; 1.85A
{Rattus norvegicus} PDB: 3egh_C* 3hvq_C 2fn5_A
Length = 170
Score = 56.5 bits (136), Expect = 5e-10
Identities = 12/69 (17%), Positives = 27/69 (39%), Gaps = 1/69 (1%)
Query: 22 GYGFNLHGEKGKTGQYIGKVDEGSPAEAAG-LKEGDHIIEVNSVNICNENHNQVVQRIKA 80
G G K G ++ V EG A G ++ D ++EV+ ++ + ++
Sbjct: 99 GMGAGADMGLEKLGIFVKTVTEGGAAHRDGRIQVNDLLVEVDGTSLVGVTQSFAASVLRN 158
Query: 81 VPDETKLLV 89
+ ++
Sbjct: 159 TKGRVRFMI 167
>1v6b_A Harmonin isoform A1; structural genomics, usher syndrome, USH1,
riken structural genomics/proteomics initiative, RSGI,
protein binding; NMR {Mus musculus} SCOP: b.36.1.1
Length = 118
Score = 54.8 bits (132), Expect = 8e-10
Identities = 13/80 (16%), Positives = 29/80 (36%), Gaps = 3/80 (3%)
Query: 13 HILKWTDFDGYGFNLHG--EKGKTGQYIGKVDEGSPAEAAG-LKEGDHIIEVNSVNICNE 69
+L+ L G + + V EG AE G + +GD I+ +N + +
Sbjct: 20 RLLRIKKEGSLDLALEGGVDSPVGKVVVSAVYEGGAAERHGGVVKGDEIMAINGKIVTDY 79
Query: 70 NHNQVVQRIKAVPDETKLLV 89
+ ++ ++ +
Sbjct: 80 TLAEAEAALQKAWNQGGDWI 99
>2zpm_A Regulator of sigma E protease; metalloproteinase, membrane
protein, PDZ domain, hydrolase, inner membrane,
membrane, metal-binding; HET: MLY MSE; 0.98A
{Escherichia coli} PDB: 3id2_A 3id3_A 3id4_A
Length = 91
Score = 54.0 bits (130), Expect = 8e-10
Identities = 13/59 (22%), Positives = 23/59 (38%), Gaps = 2/59 (3%)
Query: 38 IGKVDEGSPAEAAGLKEGDHIIEVNSVNICNENHNQVVQRIKAVPDETKLLVVDVASEE 96
+ V S A AGL+ GD I+ V+ + V ++ P + L ++
Sbjct: 8 LENVQPNSAASXAGLQAGDRIVXVDGQPL--TQWVTFVMLVRDNPGXSLALEIERQGSP 64
>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM,
tight junction, cell adhesio; 2.50A {Homo sapiens} PDB:
3tsw_A 3lh5_A
Length = 391
Score = 57.5 bits (138), Expect = 1e-09
Identities = 25/88 (28%), Positives = 40/88 (45%), Gaps = 4/88 (4%)
Query: 3 EDKTPVVRLCHILKWTDFDGYGFNLHGEKGKTGQYIGKVDEGSPAEAAGLKEGDHIIEVN 62
P ++L K D G L G G ++ V E SPA GL+EGD I+ VN
Sbjct: 4 MILRPSMKLVKFRK---GDSVGLRLAGGN-DVGIFVAGVLEDSPAAKEGLEEGDQILRVN 59
Query: 63 SVNICNENHNQVVQRIKAVPDETKLLVV 90
+V+ N + V + +P ++ ++
Sbjct: 60 NVDFTNIIREEAVLFLLDLPKGEEVTIL 87
>1wh1_A KIAA1095 protein; PDZ domain, structural genomics, riken structural
genomics/proteomics initiative, RSGI, unknown function;
NMR {Homo sapiens} SCOP: b.36.1.1
Length = 124
Score = 53.7 bits (129), Expect = 2e-09
Identities = 18/79 (22%), Positives = 33/79 (41%), Gaps = 5/79 (6%)
Query: 16 KWTDFDGYGFNLHG---EKGKTGQYIGKVDEGSPAEAAG-LKEGDHIIEVNSVNICNENH 71
+ D G + ++ G YI ++D S A G ++EGD II++N + + N
Sbjct: 27 RMNSQDKLGLTVCYRTDDEDDIGIYISEIDPNSIAAKDGRIREGDRIIQINGIEVQNREE 86
Query: 72 NQVVQRIKAVPDETKLLVV 90
+ + LL+
Sbjct: 87 AVALLTSEE-NKNFSLLIA 104
>1z87_A Alpha-1-syntrophin; protein binding; NMR {Mus musculus}
Length = 263
Score = 55.5 bits (133), Expect = 4e-09
Identities = 27/114 (23%), Positives = 46/114 (40%), Gaps = 3/114 (2%)
Query: 21 DGYGFNLHGEKG-KTGQYIGKVDEGSPAEAAG-LKEGDHIIEVNSVNICNENHNQVVQRI 78
G G ++ G + K I K+ +G A+ L GD I+ VN ++ + H++ VQ +
Sbjct: 89 GGLGISIKGGRENKMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQAL 148
Query: 79 KAVPDETKLLVVDVASEEYFKSNNITISSSLPDIVHLRTPATSGNSNHVEKPSS 132
K E L V E N +S+ +P S+ +P +
Sbjct: 149 KKTGKEVV-LEVKYMKEVSPYFKNSAGGTSVGWDSPPASPLQRQPSSPGPQPRN 201
>1wg6_A Hypothetical protein (riken cDNA 2810455B10); structural genomics,
PDZ domain, riken structural genomics/proteomics
initiative, RSGI; NMR {Mus musculus} SCOP: b.36.1.1 PDB:
2koh_A 2k1z_A 2k20_A
Length = 127
Score = 52.5 bits (126), Expect = 7e-09
Identities = 15/85 (17%), Positives = 33/85 (38%), Gaps = 6/85 (7%)
Query: 14 ILKWTDFDGYGFNLHG-----EKGKTGQYIGKVDEGSPAEAAG-LKEGDHIIEVNSVNIC 67
L + G G +L G G +I + G A G L+ D +I VN +
Sbjct: 30 PLNDSGSAGLGVSLKGNKSRETGTDLGIFIKSIIHGGAAFKDGRLRMNDQLIAVNGETLL 89
Query: 68 NENHNQVVQRIKAVPDETKLLVVDV 92
+++++ ++ ++ + +
Sbjct: 90 GKSNHEAMETLRRSMSMEGNIRGMI 114
>2pzd_A Serine protease HTRA2; PDZ domain, apoptosis, mitochondria,
peptid module, hydrolase; 2.75A {Homo sapiens} SCOP:
b.36.1.4
Length = 113
Score = 49.6 bits (119), Expect = 5e-08
Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 4/56 (7%)
Query: 35 GQYIGKVDEGSPAEAAGLKEGDHIIEVNSVNICNENHNQVVQRIKAVPDETKLLVV 90
G I KV GSPA AGL+ GD I+ + + +N V + ++ + +
Sbjct: 36 GVLIHKVILGSPAHRAGLRPGDVILAIGEQMV--QNAEDVYEAVR--TQSQLAVQI 87
>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell
adhesion; 2.90A {Homo sapiens}
Length = 468
Score = 52.6 bits (125), Expect = 6e-08
Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
Query: 21 DGYGFNLHGEKGKTGQYIGKVDEGSPAEAAGLKEGDHIIEVNSVNICNENHNQVVQRIKA 80
D G L G G ++ V E SPA GL+EGD I+ VN+V+ N + V +
Sbjct: 11 DSVGLRLAGGN-DVGIFVAGVLEDSPAAKEGLEEGDQILRVNNVDFTNIIREEAVLFLLD 69
Query: 81 VPDETKLLVV 90
+P ++ ++
Sbjct: 70 LPKGEEVTIL 79
>2e7k_A Maguk P55 subfamily member 2; PDZ domain, MPP2 protein, discs
large homolog 2, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 91
Score = 48.6 bits (116), Expect = 7e-08
Identities = 16/83 (19%), Positives = 30/83 (36%), Gaps = 5/83 (6%)
Query: 9 VRLCHILKWTDFDGYGFNLHGEKGKTGQYIGKVDEGSPAE-AAGLKEGDHIIEVNSVNIC 67
R+ I K + G E G+ I ++ G L GD I EVN +
Sbjct: 7 GRMVGIRKTAG-EHLGVTFRVEGGEL--VIARILHGGMVAQQGLLHVGDIIKEVNGQPVG 63
Query: 68 NENHNQVVQRIKAVPDETKLLVV 90
+ + + + ++ L ++
Sbjct: 64 S-DPRALQELLRNASGSVILKIL 85
>3id1_A Regulator of sigma E protease; hydrolase, cell inner membrane, cell
membrane, membrane, metal-binding, metalloprotease,
transmembrane; 1.67A {Escherichia coli k-12} PDB: 2zpl_A
Length = 95
Score = 48.0 bits (114), Expect = 1e-07
Identities = 10/75 (13%), Positives = 29/75 (38%), Gaps = 3/75 (4%)
Query: 38 IGKVDEGSPAEAAGLKEGDHIIEVNSVNICNENHNQVVQRI-KAVPDETKLLVVDVASEE 96
+G++ S A A + G + V+ + + + V ++ + DE+ + V +
Sbjct: 6 VGEIAANSIAAEAQIAPGTELKAVDGIET--PDWDAVRLQLVDKIGDESTTITVAPFGSD 63
Query: 97 YFKSNNITISSSLPD 111
+ + + +
Sbjct: 64 QRRDVKLDLRHWAFE 78
>2qbw_A PDZ-fibronectin fusion protein; fibronectin PDZ, unknown function;
1.80A {Homo sapiens} PDB: 3ch8_A
Length = 195
Score = 49.5 bits (117), Expect = 2e-07
Identities = 24/127 (18%), Positives = 42/127 (33%), Gaps = 12/127 (9%)
Query: 21 DGYGFNLHG---------EKGKTGQYIGKVDEGSPAEAAGLKEGDHIIEVNSVNICNENH 71
GF++ G G ++ +V PA L+ GD II+ N + N H
Sbjct: 2 PELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPASKL-LQPGDKIIQANGYSFINIEH 60
Query: 72 NQVVQRIKAVPDETKLLVVDVASEEYFKSNNITISSSLPDIVHLRTPATSGNSNHVEKPS 131
Q V +K + +L++ V I + + + P+
Sbjct: 61 GQAVSLLKTFQNTVELII--VREVGNGAKQEIRVRVEKDGGSGGVSSVPTNLEVVAATPT 118
Query: 132 SEAASEE 138
S S +
Sbjct: 119 SLLISWD 125
>1ky9_A Protease DO, DEGP, HTRA; protein quality control, serine protease,
trypsin, chaperone, PDZ, ATP-independent,
temperature-regulated, periplasm; 2.80A {Escherichia
coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3ou0_A 4a8d_A 3otp_A
3mh7_A 3mh4_A 3mh5_A* 3mh6_A* 3cs0_A 2zle_A
Length = 448
Score = 49.6 bits (119), Expect = 5e-07
Identities = 16/64 (25%), Positives = 29/64 (45%), Gaps = 2/64 (3%)
Query: 26 NLHGEKGKTGQYIGKVDEGSPAEAAGLKEGDHIIEVNSVNICNENHNQVVQRIKAVPDET 85
+ + G + V G+PA GLK+GD II N + +N ++ + + + P
Sbjct: 375 EMSNKGKDQGVVVNNVKTGTPAAQIGLKKGDVIIGANQQAV--KNIAELRKVLDSKPSVL 432
Query: 86 KLLV 89
L +
Sbjct: 433 ALNI 436
Score = 43.1 bits (102), Expect = 6e-05
Identities = 12/38 (31%), Positives = 18/38 (47%)
Query: 29 GEKGKTGQYIGKVDEGSPAEAAGLKEGDHIIEVNSVNI 66
+ G ++ +V S A AG+K GD I +N I
Sbjct: 281 KVDAQRGAFVSQVLPNSSAAKAGIKAGDVITSLNGKPI 318
>4a8c_A Periplasmic PH-dependent serine endoprotease DEGQ; chaperone,
hydrolase; 7.50A {Escherichia coli} PDB: 4a8a_A 4a8b_A
4a9g_A
Length = 436
Score = 49.2 bits (118), Expect = 6e-07
Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Query: 26 NLHGEKGKTGQYIGKVDEGSPAEAAGLKEGDHIIEVNSVNICNENHNQVVQRIKAVPDET 85
+ + G G I +V +GSPA AGL++ D II VN + + ++ + + A P
Sbjct: 355 DGQLKDGGKGIKIDEVVKGSPAAQAGLQKDDVIIGVNRDRV--NSIAEMRKVLAAKPAII 412
Query: 86 KLLV 89
L +
Sbjct: 413 ALQI 416
Score = 43.4 bits (103), Expect = 5e-05
Identities = 11/38 (28%), Positives = 19/38 (50%)
Query: 29 GEKGKTGQYIGKVDEGSPAEAAGLKEGDHIIEVNSVNI 66
+ G ++ +V GS + AG+K GD I +N +
Sbjct: 258 NLDVQRGAFVSEVLPGSGSAKAGVKAGDIITSLNGKPL 295
>2p3w_A Probable serine protease HTRA3; PDZ domain, phage derived high
affinity ligand, protein BIND; 1.70A {Homo sapiens}
Length = 112
Score = 45.8 bits (109), Expect = 1e-06
Identities = 11/32 (34%), Positives = 21/32 (65%)
Query: 35 GQYIGKVDEGSPAEAAGLKEGDHIIEVNSVNI 66
G Y+ +V SP++ G+++GD I++VN +
Sbjct: 36 GIYVQEVAPNSPSQRGGIQDGDIIVKVNGRPL 67
>3k50_A Putative S41 protease; structural genomics, joint center for
structural genomics, JCSG, protein structure initiative;
2.00A {Bacteroides fragilis nctc 9343}
Length = 403
Score = 47.5 bits (113), Expect = 2e-06
Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
Query: 22 GYGFNLHGEKGKTGQYIGKVD---EGSPAEAAGLKEGDHIIEVNSVNICNENHNQVVQR 77
G+ + L+ Y + GSPAE AGL+ G I+ +N I + ++++Q
Sbjct: 75 GFDYTLYKVLDNDTAYNALISYVVPGSPAEEAGLQRGHWIMMMNGDYITKKVESELLQG 133
>3pv2_A DEGQ; trypsin fold, PDZ domain, chaperone protease, hydrolase;
2.15A {Legionella fallonii} PDB: 3pv3_A 3pv5_A 3pv4_A
Length = 451
Score = 47.3 bits (113), Expect = 3e-06
Identities = 12/60 (20%), Positives = 20/60 (33%), Gaps = 2/60 (3%)
Query: 30 EKGKTGQYIGKVDEGSPAEAAGLKEGDHIIEVNSVNICNENHNQVVQRIKAVPDETKLLV 89
G + E S AG++ GD II N + + + + E + V
Sbjct: 382 HGNVIGVQVVGASENSAGWRAGIRPGDIIISANKKPV--TDVKSLQTIAQEKKKELLVQV 439
Score = 44.2 bits (105), Expect = 3e-05
Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Query: 24 GFNLHGEKGKTGQYIGKVDEGSPAEAAGLKEGDHIIEVNSVNI 66
+ G + +V+ SPAE AGLK GD I ++N I
Sbjct: 274 AMGY--PEDFQGALVSQVNPNSPAELAGLKAGDIITQINDTKI 314
>1lcy_A HTRA2 serine protease; apoptosis, PDZ domain, caspase activation,
binding, hydrolase; 2.00A {Homo sapiens} SCOP: b.36.1.4
b.47.1.1
Length = 325
Score = 46.9 bits (112), Expect = 3e-06
Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 4/56 (7%)
Query: 35 GQYIGKVDEGSPAEAAGLKEGDHIIEVNSVNICNENHNQVVQRIKAVPDETKLLVV 90
G I KV GSPA AGL+ GD I+ + + +N V + ++ + +
Sbjct: 257 GVLIHKVILGSPAHRAGLRPGDVILAIGEQMV--QNAEDVYEAVR--TQSQLAVQI 308
>4fgm_A Aminopeptidase N family protein; structural genomics, PSI-biology,
northeast structural genom consortium, NESG,
peptidase_M61, PDZ; 2.39A {Idiomarina loihiensis L2TR}
Length = 597
Score = 46.5 bits (109), Expect = 7e-06
Identities = 16/95 (16%), Positives = 33/95 (34%), Gaps = 4/95 (4%)
Query: 23 YGFNLHGEKGKTGQYIGKVDEGSPAEAAGLKEGDHIIEVNSVNICNENHNQVVQRIKAVP 82
F + G + V A AGL GD II ++ + ++ ++++R P
Sbjct: 485 VNFGAKYKASPQGLDVLNVYHDESAYHAGLSAGDKIIAIDHLQATEQSVKRILERYI--P 542
Query: 83 DETKLLVVDVASEEYFKSNNITISSSLPDIVHLRT 117
+T + + + + +T L
Sbjct: 543 GDT--VTIHAFRRDELMTLELTWQEPAKSSYVLSV 575
>1y8t_A Hypothetical protein RV0983; serine protease, structural genomics,
PSI, protein structure initiative; 2.00A {Mycobacterium
tuberculosis} SCOP: b.36.1.4 b.47.1.1 PDB: 2z9i_A
Length = 324
Score = 45.7 bits (109), Expect = 9e-06
Identities = 15/57 (26%), Positives = 23/57 (40%)
Query: 35 GQYIGKVDEGSPAEAAGLKEGDHIIEVNSVNICNENHNQVVQRIKAVPDETKLLVVD 91
G I +V G A AG+ +G + +V+ I + + R KA L D
Sbjct: 243 GAKIVEVVAGGAAANAGVPKGVVVTKVDDRPINSADALVAAVRSKAPGATVALTFQD 299
>3num_A Serine protease HTRA1; DEGP, hydrolase; 2.75A {Homo sapiens} PDB:
3nzi_A 3nwu_A 2ytw_A 2joa_A
Length = 332
Score = 45.7 bits (109), Expect = 9e-06
Identities = 20/45 (44%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Query: 35 GQYIGKVDEGSPAEAAGLKEGDHIIEVNSVNICNENHNQVVQRIK 79
G YI +V +PAEA GLKE D II +N ++ + N V IK
Sbjct: 255 GAYIIEVIPDTPAEAGGLKENDVIISINGQSV--VSANDVSDVIK 297
>2l97_A HTRA, putative serine protease; HTRA-PDZ, protein binding; NMR
{Streptococcus pneumoniae}
Length = 134
Score = 42.2 bits (100), Expect = 2e-05
Identities = 9/38 (23%), Positives = 15/38 (39%), Gaps = 1/38 (2%)
Query: 29 GEKGKTGQYIGKVDEGSPAEAAGLKEGDHIIEVNSVNI 66
+G + V PA L++ D I +V+ I
Sbjct: 52 PSNVTSGVIVRSVQSNMPAN-GHLEKYDVITKVDDKEI 88
>1te0_A Protease DEGS; two domains, serine protease, PDZ, alpha-beta
protein, hydro; 2.20A {Escherichia coli} SCOP: b.36.1.4
b.47.1.1 PDB: 3gdv_A* 3gcn_A* 3gds_A* 3gdu_A* 3gco_A*
1sot_A 1soz_A 1vcw_A 2r3y_A
Length = 318
Score = 43.3 bits (103), Expect = 4e-05
Identities = 11/38 (28%), Positives = 17/38 (44%)
Query: 29 GEKGKTGQYIGKVDEGSPAEAAGLKEGDHIIEVNSVNI 66
G G + +V PA AG++ D II V++
Sbjct: 239 GIDQLQGIVVNEVSPDGPAANAGIQVNDLIISVDNKPA 276
>3stj_A Protease DEGQ; serine protease, PDZ domain, protease, chaperone,
DEGP, DEGQ hydrolase; 2.60A {Escherichia coli}
Length = 345
Score = 43.0 bits (102), Expect = 7e-05
Identities = 11/38 (28%), Positives = 19/38 (50%)
Query: 29 GEKGKTGQYIGKVDEGSPAEAAGLKEGDHIIEVNSVNI 66
+ G ++ +V GS + AG+K GD I +N +
Sbjct: 258 NLDVQRGAFVSEVLPGSGSAKAGVKAGDIITSLNGKPL 295
>1fc6_A Photosystem II D1 protease; D1 C-terminal processing protease,
serine protease, serine- lysine catalytic DYAD, PDZ
domain, photosynthesis; 1.80A {Scenedesmus obliquus}
SCOP: b.36.1.3 c.14.1.2 PDB: 1fc9_A 1fc7_A 1fcf_A
Length = 388
Score = 42.6 bits (101), Expect = 9e-05
Identities = 11/37 (29%), Positives = 18/37 (48%)
Query: 43 EGSPAEAAGLKEGDHIIEVNSVNICNENHNQVVQRIK 79
G PAE AG + GD I+ V+ + + V ++
Sbjct: 108 PGGPAEKAGARAGDVIVTVDGTAVKGMSLYDVSDLLQ 144
>2kl1_A YLBL protein; structure genomics, structural genomics, PSI-2,
protein STRU initiative, northeast structural genomics
consortium; NMR {Geobacillus thermodenitrificans}
Length = 94
Score = 39.2 bits (92), Expect = 1e-04
Identities = 11/36 (30%), Positives = 15/36 (41%), Gaps = 1/36 (2%)
Query: 31 KGKTGQYIGKVDEGSPAEAAGLKEGDHIIEVNSVNI 66
G Y+ V PA A L+ GD I ++ I
Sbjct: 2 NEAKGVYVMSVLPNMPA-AGRLEAGDRIAAIDGQPI 36
>2i4s_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type
2 secretion system, protein transport, membrane
protein; 1.92A {Vibrio cholerae} SCOP: b.36.1.5
Length = 105
Score = 39.1 bits (91), Expect = 2e-04
Identities = 9/54 (16%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Query: 34 TGQYIGKVDEGSPAEAAGLKEGDHIIEVNSVNICNENHNQVVQRIKAVPDETKL 87
G + + E+ GL++GD + +N +++ + N + +++ + T++
Sbjct: 37 LGYRVSPGKDPVLFESIGLQDGDMAVALNGLDL--TDPNVMNTLFQSMNEMTEM 88
>2hga_A Conserved protein MTH1368; GFT structural genomics, PSI, protein
structure initiative; NMR
{Methanothermobacterthermautotrophicus} SCOP: b.36.1.6
Length = 125
Score = 39.8 bits (93), Expect = 2e-04
Identities = 15/59 (25%), Positives = 20/59 (33%), Gaps = 4/59 (6%)
Query: 34 TGQYIGKVDEGSPAEAAGLKEGDHIIEVNSVNICNENHNQVVQRIKAV-PDETKLLVVD 91
G I V GSPA L G I +N + N +K + E + D
Sbjct: 25 DGVQIDSVVPGSPASKV-LTPGLVIESINGMPT--SNLTTYSAALKTISVGEVINITTD 80
>2kjp_A Uncharacterized protein YLBL; mixed alpha-beta protein, cell
membrane, hydrolase, membrane, protease, serine
protease, transmembrane; NMR {Bacillus subtilis}
Length = 91
Score = 38.4 bits (90), Expect = 2e-04
Identities = 11/32 (34%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 35 GQYIGKVDEGSPAEAAGLKEGDHIIEVNSVNI 66
G Y V E PA+ ++ GD II + N
Sbjct: 2 GIYASSVVENMPAKG-KIEVGDKIISADGKNY 32
>3rle_A Golgi reassembly-stacking protein 2; PDZ, tether, golgin, membrane
protein; 1.65A {Homo sapiens}
Length = 209
Score = 40.5 bits (94), Expect = 3e-04
Identities = 20/95 (21%), Positives = 35/95 (36%), Gaps = 11/95 (11%)
Query: 4 DKTPVVRLCHILKWTDFDGYG-------FNLHGEKGKTGQYIGKVDEGSPAEAAGLKE-G 55
KT +R + + G G F + ++ +V+ SPA AGL+
Sbjct: 75 SKTLELRETSVTPSNLWGGQGLLGVSIRFCSFDGANENVWHVLEVESNSPAALAGLRPHS 134
Query: 56 DHIIEVNSVNICNENHNQVVQRIKAVPDETKLLVV 90
D+II ++V + I+ + L V
Sbjct: 135 DYIIGADTVMN---ESEDLFSLIETHEAKPLKLYV 166
Score = 40.1 bits (93), Expect = 4e-04
Identities = 17/67 (25%), Positives = 28/67 (41%), Gaps = 1/67 (1%)
Query: 32 GKTGQYIGKVDEGSPAEAAGLK-EGDHIIEVNSVNICNENHNQVVQRIKAVPDETKLLVV 90
G G ++ +V E SP AGL+ D I+ +N + +N V K+L+
Sbjct: 14 GTEGYHVLRVQENSPGHRAGLEPFFDFIVSINGSRLNKDNDTLKDLLKANVEKPVKMLIY 73
Query: 91 DVASEEY 97
+ E
Sbjct: 74 SSKTLEL 80
>2i6v_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type
2 secretion system, protein transport, membrane
protein; 1.63A {Vibrio cholerae} SCOP: b.36.1.5
Length = 87
Score = 36.3 bits (84), Expect = 0.001
Identities = 9/54 (16%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Query: 34 TGQYIGKVDEGSPAEAAGLKEGDHIIEVNSVNICNENHNQVVQRIKAVPDETKL 87
G + + E+ GL++GD + +N +++ + N + +++ + T++
Sbjct: 19 LGYRVSPGKDPVLFESIGLQDGDMAVALNGLDL--TDPNVMNTLFQSMNEMTEM 70
>3i18_A LMO2051 protein; alpha-beta protein, structural genomics, PSI-2,
protein structure initiative, northeast structural
genomics consortium; 1.70A {Listeria monocytogenes}
PDB: 2kjk_A 3i1e_A
Length = 100
Score = 35.4 bits (82), Expect = 0.004
Identities = 10/32 (31%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
Query: 35 GQYIGKVDEGSPAEAAGLKEGDHIIEVNSVNI 66
G Y+ V + PA L GD I E++
Sbjct: 8 GVYVMSVKDDVPAADV-LHAGDLITEIDGNAF 38
>3qo6_A Protease DO-like 1, chloroplastic; protease, HTRA, PH-sensor,
hydrolase, photosynthesis; 2.50A {Arabidopsis thaliana}
Length = 348
Score = 35.3 bits (82), Expect = 0.019
Identities = 12/46 (26%), Positives = 16/46 (34%), Gaps = 11/46 (23%)
Query: 32 GKTGQYIGKVDEGSPAEAAGLKE-----------GDHIIEVNSVNI 66
G +G + PA AGL+ GD I VN +
Sbjct: 249 GVSGVLVLDAPPSGPAGKAGLQSTKRDGYGRLVLGDIITSVNGTKV 294
>2yub_A LIMK-2, LIM domain kinase 2; PDZ domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Mus musculus}
Length = 118
Score = 33.6 bits (76), Expect = 0.020
Identities = 14/64 (21%), Positives = 24/64 (37%), Gaps = 2/64 (3%)
Query: 28 HGEKGKTGQYIGKVDEG--SPAEAAGLKEGDHIIEVNSVNICNENHNQVVQRIKAVPDET 85
T + +V+ SP + GD I+E+N + +V IK
Sbjct: 38 ASSNYATTVQVKEVNRMHISPNNRNAIHPGDRILEINGTPVRTLRVEEVEDAIKQTSQTL 97
Query: 86 KLLV 89
+LL+
Sbjct: 98 QLLI 101
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 32.3 bits (73), Expect = 0.22
Identities = 40/248 (16%), Positives = 78/248 (31%), Gaps = 70/248 (28%)
Query: 52 LKEGDHIIEVNSVNICNENHNQVVQR----IKAVPDETKLLVVDVASEEYFKSNNITISS 107
L G +E + + + Q K +P+ T+ D +E +
Sbjct: 11 LSHGS--LEH-VLLVPTASFFIASQLQEQFNKILPEPTEGFAAD---DE---------PT 55
Query: 108 SLPD--------IVHLRTPATSGNSNHVEKPSSEAASEEYFKSNNI-TISSSLPDIVHLR 158
+ + + L P+ G + V Y + N+I +++ L
Sbjct: 56 TPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTT 115
Query: 159 TPATSG------NSNHVEKPSSEESNNSTNQSLTNNTPTPTT----------NTNN---- 198
T + + K ++ +NS +L NT++
Sbjct: 116 LVKTKELIKNYITARIMAKRPFDKKSNS---ALFRAVGEGNAQLVAIFGGQGNTDDYFEE 172
Query: 199 -----TTNHENQNNLNLNMSAKELRAKLASRKKYDPKKDY---LDIKKKYDISTNQSLTN 250
T H +L + SA+ L ++L R D +K + L+I + L N
Sbjct: 173 LRDLYQTYHVLVGDL-IKFSAETL-SEL-IRTTLDAEKVFTQGLNIL--------EWLEN 221
Query: 251 NTPTPTTN 258
+ TP +
Sbjct: 222 PSNTPDKD 229
>1ve4_A ATP phosphoribosyltransferase; riken structural genomics/proteomics
initiative structural genomics; 1.20A {Thermus
thermophilus} SCOP: c.94.1.1
Length = 206
Score = 30.2 bits (69), Expect = 0.57
Identities = 10/49 (20%), Positives = 20/49 (40%), Gaps = 8/49 (16%)
Query: 41 VDEGSPAEAAGLKEGDHIIEVNSVNICNENH--------NQVVQRIKAV 81
V G+ AAGL E + + + + N ++QR++ +
Sbjct: 155 VQTGATLRAAGLVEVEVLAHSTARLVVNRQALKLKRAVLKPLIQRLREL 203
>2vd2_A ATP phosphoribosyltransferase; HISG, glycosyltransferase, histidine
biosynthes amino-acid biosynthesis; 2.85A {Bacillus
subtilis}
Length = 214
Score = 30.2 bits (69), Expect = 0.65
Identities = 12/49 (24%), Positives = 20/49 (40%), Gaps = 8/49 (16%)
Query: 41 VDEGSPAEAAGLKEGDHIIEVNSVNICNENH--------NQVVQRIKAV 81
V G + GL E +HI ++ S I N +++ R+ V
Sbjct: 159 VSTGQTLKENGLVETEHICDITSRFIVNPVSYRMKDDVIDEMASRLSLV 207
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.5 bits (65), Expect = 0.80
Identities = 12/38 (31%), Positives = 15/38 (39%), Gaps = 15/38 (39%)
Query: 203 ENQNNLNLNMSAKELRAKLASRKKYDPKKDY---LDIK 237
E Q + K+L+A L K Y D L IK
Sbjct: 18 EKQ-------ALKKLQASL---KLYAD--DSAPALAIK 43
Score = 29.5 bits (65), Expect = 0.80
Identities = 12/38 (31%), Positives = 15/38 (39%), Gaps = 15/38 (39%)
Query: 266 ENQNNLNLNMSAKELRAKLASRKKYDPKKDY---LDIK 300
E Q + K+L+A L K Y D L IK
Sbjct: 18 EKQ-------ALKKLQASL---KLYAD--DSAPALAIK 43
>2vd3_A ATP phosphoribosyltransferase; metal-binding, glycosyltransferase,
HISG, histidine, magnesi transferase; HET: HIS; 2.45A
{Methanobacterium thermoautotrophicum}
Length = 289
Score = 29.9 bits (68), Expect = 0.86
Identities = 9/49 (18%), Positives = 16/49 (32%), Gaps = 8/49 (16%)
Query: 41 VDEGSPAEAAGLKEGDHIIEVNSVNICNENH--------NQVVQRIKAV 81
G+ L+ D I+E + I N ++ I+ V
Sbjct: 162 SSTGTTLRMNHLRVIDTILESSVKLIANRESYATKSGIIEELRTGIRGV 210
>1h3d_A ATP-phosphoribosyltransferase; hisitidine biosynthesis,
glycosyltransferase; HET: AMP TLA; 2.7A {Escherichia
coli} SCOP: c.94.1.1 d.58.5.3 PDB: 1q1k_A*
Length = 299
Score = 29.9 bits (68), Expect = 0.88
Identities = 15/66 (22%), Positives = 30/66 (45%), Gaps = 11/66 (16%)
Query: 41 VDEGSPAEAAGLKEGDHIIEVNSVNICNENH---------NQVVQRIKAVPD--ETKLLV 89
V G+ EA GL+E + I + I + ++++ RI+ V E+K ++
Sbjct: 171 VSTGATLEANGLREVEVIYRSKACLIQRDGEMEESKQQLIDKLLTRIQGVIQARESKYIM 230
Query: 90 VDVASE 95
+ +E
Sbjct: 231 MHAPTE 236
>1z7m_E ATP phosphoribosyltransferase; ATP-PRT, histidine biosynthesis,
hiszg, alloste evolution; 2.90A {Lactococcus lactis}
SCOP: c.94.1.1 PDB: 1z7n_E*
Length = 208
Score = 29.8 bits (68), Expect = 0.93
Identities = 10/49 (20%), Positives = 25/49 (51%), Gaps = 8/49 (16%)
Query: 41 VDEGSPAEAAGLKEGDHIIEVNSVNICNENH--------NQVVQRIKAV 81
V+ G+ A GL+ + I ++++ I N++ ++V+R++
Sbjct: 157 VETGNTLSANGLEVIEKISDISTRMIVNKSSFKFKKDKIIEMVERLEDA 205
>1o63_A ATP phosphoribosyltransferase; structural genomics; 2.00A
{Thermotoga maritima} SCOP: c.94.1.1 PDB: 1o64_A 1usy_E*
1usy_H*
Length = 219
Score = 29.1 bits (66), Expect = 1.3
Identities = 6/49 (12%), Positives = 17/49 (34%), Gaps = 8/49 (16%)
Query: 41 VDEGSPAEAAGLKEGDHIIEVNSVNICNENH--------NQVVQRIKAV 81
+ G + L+ D I + + + N +++++ V
Sbjct: 150 TETGRTLKENNLEILDEIFVIRTHVVVNPVSYRTKREEVVSFLEKLQEV 198
>3bs6_A Inner membrane protein OXAA; YIDC/OXA1/ALB3 family, membrane
insertion, chaperone, SEC translocon, periplasmic
domain, beta supersandwich fold; HET: PG4 PGE 2PE; 1.80A
{Escherichia coli}
Length = 280
Score = 29.6 bits (66), Expect = 1.3
Identities = 17/139 (12%), Positives = 37/139 (26%), Gaps = 14/139 (10%)
Query: 177 SNNSTNQSLTNNTPTPTTNTNNTTNHENQNNLNLNMSAKELRAKLASRKKYDPKKDYLDI 236
+ + P + E QN L + M+ + A K + K+
Sbjct: 61 GRDGPDNPANGPRPLYNVEKDAYVLAEGQNELQVPMTYTD-AAGNTFTKTFVLKRG---- 115
Query: 237 KKKYDISTNQSLTNNTPTP-------TTNTNNTTNHENQNNLNLNMSAKELRAKLASRKK 289
Y ++ N ++ N P + T + A ++ +
Sbjct: 116 --DYAVNVNYNVQNAGEKPLEISSFGQLKQSITLPPHLDTGSSNFALHTFRGAAYSTPDE 173
Query: 290 YDPKKDYLDIKKKYDIVQK 308
K + I ++
Sbjct: 174 KYEKYKFDTIADNENLNIS 192
>2w4o_A Calcium/calmodulin-dependent protein kinase type IV;
calmodulin-binding, nucleotide-binding,
serine/threonine-protein kinase, ATP-binding; HET: DKI;
2.17A {Homo sapiens}
Length = 349
Score = 28.8 bits (65), Expect = 2.4
Identities = 9/60 (15%), Positives = 20/60 (33%), Gaps = 1/60 (1%)
Query: 250 NNTPTPTTNTNNTTNHENQNNLNLNMSAKELRAKLASRKKYDPKKDYLDIKKKYDIVQKL 309
++ + T N Q+ ++ SA A L D + +++ +L
Sbjct: 3 HHHHHSSGVDLGTENLYFQSMSSVTASAAPGTASLVPDYWIDGSN-RDALSDFFEVESEL 61
>3blc_A Inner membrane protein OXAA; YIDC, membrane assembly facilitator,
chaperone, periplasmic inner membrane, transmembrane;
2.50A {Escherichia coli K12}
Length = 330
Score = 28.3 bits (63), Expect = 3.3
Identities = 20/155 (12%), Positives = 46/155 (29%), Gaps = 23/155 (14%)
Query: 117 TPATSGNSNHVEKPSSEAASEEYFKSNNITISSSLP--DIVHLR----TPATSGNSNHVE 170
T +G++ P+S K++ + ++ + D+ +
Sbjct: 16 TTTAAGSAADQGVPASGQGKLISVKTDVLDLTINTRGGDVEQALLPAYPKELNSTQPFQL 75
Query: 171 KPSSEE----------SNNSTNQSLTNNTPTPTTNTNNTTNHENQNNLNLNMSAKELRAK 220
+S + + + P + E QN L + M+ + A
Sbjct: 76 LETSPQFIYQAQSGLTGRDGPDNPANGPRPLYNVEKDAYVLAEGQNELQVPMTYTD-AAG 134
Query: 221 LASRKKYDPKKDYLDIKKKYDISTNQSLTNNTPTP 255
K + K+ Y ++ N ++ N P
Sbjct: 135 NTFTKTFVLKRG------DYAVNVNYNVQNAGEKP 163
>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics,
tubercidin, structu genomics, structural genomics
consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB:
4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A*
3qow_A* 3qox_A* 4er3_A* 3sr4_A*
Length = 438
Score = 28.3 bits (62), Expect = 4.0
Identities = 12/74 (16%), Positives = 20/74 (27%)
Query: 158 RTPATSGNSNHVEKPSSEESNNSTNQSLTNNTPTPTTNTNNTTNHENQNNLNLNMSAKEL 217
R SN E + ++ T + + +
Sbjct: 361 RRQQRESKSNAATPTKGPEGKVAGPADAPMDSGAEEEKAGAATVKKPSPSKARKKKLNKK 420
Query: 218 RAKLASRKKYDPKK 231
K+A RK+ PKK
Sbjct: 421 GRKMAGRKRGRPKK 434
>3vti_C Hydrogenase maturation factor; transferase, carbamoyltransfer,
maturation of [NIFE]-hydroge nitrIle synthesis, iron;
2.56A {Thermoanaerobacter tengcongensis}
Length = 314
Score = 28.0 bits (63), Expect = 4.0
Identities = 7/22 (31%), Positives = 11/22 (50%)
Query: 38 IGKVDEGSPAEAAGLKEGDHII 59
IG + EG+ K GD ++
Sbjct: 127 IGVLYEGANVSIKNAKPGDIVL 148
>1k32_A Tricorn protease; protein degradation, substrate gating, serine
protease, beta propeller, proteasome, hydrolase; 2.00A
{Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1
b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Length = 1045
Score = 27.1 bits (59), Expect = 8.9
Identities = 12/80 (15%), Positives = 27/80 (33%), Gaps = 4/80 (5%)
Query: 18 TDFDGYGFNLHGEKGKTGQYIGKVDEGSPAEAAGLK-EGDHIIEVNSVNICNENHNQVVQ 76
DF G + K G Y + E SP G+ G I +++ + + + +
Sbjct: 741 CDFKLDGDHYVVAKAYAGDYSNE-GEKSPIFEYGIDPTGYLIEDIDGETV--GAGSNIYR 797
Query: 77 RIKAVPDETKLLVVDVASEE 96
+ + + + +
Sbjct: 798 VLSEKAGTSARIRLSGKGGD 817
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.305 0.123 0.338
Gapped
Lambda K H
0.267 0.0425 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,367,103
Number of extensions: 245406
Number of successful extensions: 719
Number of sequences better than 10.0: 1
Number of HSP's gapped: 634
Number of HSP's successfully gapped: 222
Length of query: 309
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 216
Effective length of database: 4,105,140
Effective search space: 886710240
Effective search space used: 886710240
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.9 bits)
S2: 57 (26.5 bits)