BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10429
(207 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2OZL|B Chain B, Human Pyruvate Dehydrogenase S264e Variant
pdb|2OZL|D Chain D, Human Pyruvate Dehydrogenase S264e Variant
Length = 341
Score = 341 bits (875), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 157/201 (78%), Positives = 181/201 (90%)
Query: 1 MTVRDALNSALDEEMARDEKVFLLGEEVALYDGAYKVSRGLWKKYGDKRVLDTPITEIGF 60
+TVRDA+N +DEE+ RDEKVFLLGEEVA YDGAYKVSRGLWKKYGDKR++DTPI+E+GF
Sbjct: 15 VTVRDAINQGMDEELERDEKVFLLGEEVAQYDGAYKVSRGLWKKYGDKRIIDTPISEMGF 74
Query: 61 AGIAVGAAMAGLRPVCEFMTFNFSMQAIDHIINSAAKTFYMSAGTVNVPIVFRGPNGAAS 120
AGIAVGAAMAGLRP+CEFMTFNFSMQAID +INSAAKT+YMS G VPIVFRGPNGA++
Sbjct: 75 AGIAVGAAMAGLRPICEFMTFNFSMQAIDQVINSAAKTYYMSGGLQPVPIVFRGPNGASA 134
Query: 121 GVAAQHSQCFGAWFTQCPGLKVVSPYNSEDAKGLLKAAIRDPDPVVFLENELLYGVQYPM 180
GVAAQHSQCF AW+ CPGLKVVSP+NSEDAKGL+K+AIRD +PVV LENEL+YGV +
Sbjct: 135 GVAAQHSQCFAAWYGHCPGLKVVSPWNSEDAKGLIKSAIRDNNPVVVLENELMYGVPFEF 194
Query: 181 GDEALSKDFVLPIGKAKVEKQ 201
EA SKDF++PIGKAK+E+Q
Sbjct: 195 PPEAQSKDFLIPIGKAKIERQ 215
>pdb|3EXE|B Chain B, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXE|D Chain D, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXE|F Chain F, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXE|H Chain H, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXF|B Chain B, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXF|D Chain D, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXF|F Chain F, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXF|H Chain H, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|B Chain B, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|D Chain D, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|F Chain F, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|H Chain H, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|J Chain J, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|L Chain L, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|N Chain N, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|P Chain P, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|R Chain R, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|T Chain T, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|V Chain V, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|X Chain X, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|Z Chain Z, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|2 Chain 2, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|4 Chain 4, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|6 Chain 6, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXH|B Chain B, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXH|D Chain D, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXH|F Chain F, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXH|H Chain H, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXI|B Chain B, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex With
The Subunit-Binding Domain (Sbd) Of E2p, But Sbd Cannot
Be Modeled Into The Electron Density
Length = 329
Score = 341 bits (875), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 157/201 (78%), Positives = 181/201 (90%)
Query: 1 MTVRDALNSALDEEMARDEKVFLLGEEVALYDGAYKVSRGLWKKYGDKRVLDTPITEIGF 60
+TVRDA+N +DEE+ RDEKVFLLGEEVA YDGAYKVSRGLWKKYGDKR++DTPI+E+GF
Sbjct: 3 VTVRDAINQGMDEELERDEKVFLLGEEVAQYDGAYKVSRGLWKKYGDKRIIDTPISEMGF 62
Query: 61 AGIAVGAAMAGLRPVCEFMTFNFSMQAIDHIINSAAKTFYMSAGTVNVPIVFRGPNGAAS 120
AGIAVGAAMAGLRP+CEFMTFNFSMQAID +INSAAKT+YMS G VPIVFRGPNGA++
Sbjct: 63 AGIAVGAAMAGLRPICEFMTFNFSMQAIDQVINSAAKTYYMSGGLQPVPIVFRGPNGASA 122
Query: 121 GVAAQHSQCFGAWFTQCPGLKVVSPYNSEDAKGLLKAAIRDPDPVVFLENELLYGVQYPM 180
GVAAQHSQCF AW+ CPGLKVVSP+NSEDAKGL+K+AIRD +PVV LENEL+YGV +
Sbjct: 123 GVAAQHSQCFAAWYGHCPGLKVVSPWNSEDAKGLIKSAIRDNNPVVVLENELMYGVPFEF 182
Query: 181 GDEALSKDFVLPIGKAKVEKQ 201
EA SKDF++PIGKAK+E+Q
Sbjct: 183 PPEAQSKDFLIPIGKAKIERQ 203
>pdb|1NI4|B Chain B, Human Pyruvate Dehydrogenase
pdb|1NI4|D Chain D, Human Pyruvate Dehydrogenase
Length = 341
Score = 301 bits (772), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 153/201 (76%), Positives = 174/201 (86%)
Query: 1 MTVRDALNSALDEEMARDEKVFLLGEEVALYDGAYKVSRGLWKKYGDKRVLDTPITEIGF 60
+TVRDA+N DEE+ RDEKVFLLGEEVA YDGAYKVSRGLWKKYGDKR++DTPI+E GF
Sbjct: 15 VTVRDAINQGXDEELERDEKVFLLGEEVAQYDGAYKVSRGLWKKYGDKRIIDTPISEXGF 74
Query: 61 AGIAVGAAMAGLRPVCEFMTFNFSMQAIDHIINSAAKTFYMSAGTVNVPIVFRGPNGAAS 120
AGIAVGAA AGLRP+CEF TFNFS QAID +INSAAKT+Y S G VPIVFRGPNGA++
Sbjct: 75 AGIAVGAAXAGLRPICEFXTFNFSXQAIDQVINSAAKTYYXSGGLQPVPIVFRGPNGASA 134
Query: 121 GVAAQHSQCFGAWFTQCPGLKVVSPYNSEDAKGLLKAAIRDPDPVVFLENELLYGVQYPM 180
GVAAQHSQCF AW+ CPGLKVVSP+NSEDAKGL+K+AIRD +PVV LENEL YGV +
Sbjct: 135 GVAAQHSQCFAAWYGHCPGLKVVSPWNSEDAKGLIKSAIRDNNPVVVLENELXYGVPFEF 194
Query: 181 GDEALSKDFVLPIGKAKVEKQ 201
EA SKDF++PIGKAK+E+Q
Sbjct: 195 PPEAQSKDFLIPIGKAKIERQ 215
>pdb|1UM9|B Chain B, Branched-chain 2-oxo Acid Dehydrogenase (e1) From Thermus
Thermophilus Hb8 In Apo-form
pdb|1UM9|D Chain D, Branched-chain 2-oxo Acid Dehydrogenase (e1) From Thermus
Thermophilus Hb8 In Apo-form
pdb|1UMB|B Chain B, Branched-Chain 2-Oxo Acid Dehydrogenase (E1) From Thermus
Thermophilus Hb8 In Holo-Form
pdb|1UMB|D Chain D, Branched-Chain 2-Oxo Acid Dehydrogenase (E1) From Thermus
Thermophilus Hb8 In Holo-Form
pdb|1UMC|B Chain B, Branched-Chain 2-Oxo Acid Dehydrogenase (E1) From Thermus
Thermophilus Hb8 With 4-Methylpentanoate
pdb|1UMC|D Chain D, Branched-Chain 2-Oxo Acid Dehydrogenase (E1) From Thermus
Thermophilus Hb8 With 4-Methylpentanoate
pdb|1UMD|B Chain B, Branched-Chain 2-Oxo Acid Dehydrogenase (E1) From Thermus
Thermophilus Hb8 With 4-Methyl-2-Oxopentanoate As An
Intermediate
pdb|1UMD|D Chain D, Branched-Chain 2-Oxo Acid Dehydrogenase (E1) From Thermus
Thermophilus Hb8 With 4-Methyl-2-Oxopentanoate As An
Intermediate
Length = 324
Score = 163 bits (413), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 91/201 (45%), Positives = 119/201 (59%), Gaps = 3/201 (1%)
Query: 1 MTVRDALNSALDEEMARDEKVFLLGEEVALYDGAYKVSRGLWKKYGDKRVLDTPITEIGF 60
MT+ ALN ALDEEMA+D +V +LGE+V G + V+ GL +KYG RV+DTP++E
Sbjct: 4 MTMVQALNRALDEEMAKDPRVVVLGEDVGKRGGVFLVTEGLLQKYGPDRVMDTPLSEAAI 63
Query: 61 AGIAVGAAMAGLRPVCEFMTFNFSMQAIDHIINSAAKTFYMSAGTVNVPIVFRGPNGAAS 120
G A+G A GLRPV E ++ D +++ AK Y S G P+V R P+G
Sbjct: 64 VGAALGMAAHGLRPVAEIQFADYIFPGFDQLVSQVAKLRYRSGGQFTAPLVVRMPSGGGV 123
Query: 121 GVAAQHSQCFGAWFTQCPGLKVVSPYNSEDAKGLLKAAIRDPDPVVFLENELLYGVQYPM 180
HSQ A F GLKVV+ DAKGLLKAAIRD DPVVFLE + LY +
Sbjct: 124 RGGHHHSQSPEAHFVHTAGLKVVAVSTPYDAKGLLKAAIRDEDPVVFLEPKRLY---RSV 180
Query: 181 GDEALSKDFVLPIGKAKVEKQ 201
+E +D+ LPIGKA + ++
Sbjct: 181 KEEVPEEDYTLPIGKAALRRE 201
>pdb|1IK6|A Chain A, 3d Structure Of The E1beta Subunit Of Pyruvate
Dehydrogenase From The Archeon Pyrobaculum Aerophilum
Length = 369
Score = 163 bits (412), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 89/196 (45%), Positives = 120/196 (61%), Gaps = 3/196 (1%)
Query: 6 ALNSALDEEMARDEKVFLLGEEVALYDGAYKVSRGLWKKYGDKRVLDTPITEIGFAGIAV 65
A+N AL EEM RDE+V +LGE+V G + V+ GL++++G +RV+DTP+ E G G A+
Sbjct: 56 AINMALHEEMERDERVVVLGEDVGKKGGVFLVTEGLYERFGPERVIDTPLNEGGILGFAM 115
Query: 66 GAAMAGLRPVCEFMTFNFSMQAIDHIINSAAKTFYMSAGTVNVPIVFRGPNGAASGVAAQ 125
G AMAGL+PV E +F D ++N AK Y S G P+V R P G+ +
Sbjct: 116 GMAMAGLKPVAEIQFVDFIWLGADELLNHIAKLRYRSGGNYKAPLVVRTPVGSGTRGGLY 175
Query: 126 HSQCFGAWFTQCPGLKVVSPYNSEDAKGLLKAAIRDPDPVVFLENELLYGVQYPMGDEAL 185
HS A F PGL VV P +AKGLLKAAIR DPVVFLE ++LY + P +E
Sbjct: 176 HSNSPEAIFVHTPGLVVVMPSTPYNAKGLLKAAIRGDDPVVFLEPKILY--RAPR-EEVP 232
Query: 186 SKDFVLPIGKAKVEKQ 201
D+V+ IGKA+V ++
Sbjct: 233 EGDYVVEIGKARVARE 248
>pdb|1W85|B Chain B, The Crystal Structure Of Pyruvate Dehydrogenase E1 Bound
To The Peripheral Subunit Binding Domain Of E2
pdb|1W85|D Chain D, The Crystal Structure Of Pyruvate Dehydrogenase E1 Bound
To The Peripheral Subunit Binding Domain Of E2
pdb|1W85|F Chain F, The Crystal Structure Of Pyruvate Dehydrogenase E1 Bound
To The Peripheral Subunit Binding Domain Of E2
pdb|1W85|H Chain H, The Crystal Structure Of Pyruvate Dehydrogenase E1 Bound
To The Peripheral Subunit Binding Domain Of E2
pdb|1W88|B Chain B, The Crystal Structure Of Pyruvate Dehydrogenase E1(D180n,
E183q) Bound To The Peripheral Subunit Binding Domain Of
E2
pdb|1W88|D Chain D, The Crystal Structure Of Pyruvate Dehydrogenase E1(D180n,
E183q) Bound To The Peripheral Subunit Binding Domain Of
E2
pdb|1W88|F Chain F, The Crystal Structure Of Pyruvate Dehydrogenase E1(D180n,
E183q) Bound To The Peripheral Subunit Binding Domain Of
E2
pdb|1W88|H Chain H, The Crystal Structure Of Pyruvate Dehydrogenase E1(D180n,
E183q) Bound To The Peripheral Subunit Binding Domain Of
E2
Length = 324
Score = 149 bits (375), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 77/201 (38%), Positives = 109/201 (54%), Gaps = 3/201 (1%)
Query: 1 MTVRDALNSALDEEMARDEKVFLLGEEVALYDGAYKVSRGLWKKYGDKRVLDTPITEIGF 60
MT+ A+ AL E+ D V + GE+V + G ++ + GL ++G+ RV DTP+ E G
Sbjct: 3 MTMVQAITDALRIELKNDPNVLIFGEDVGVNGGVFRATEGLQAEFGEDRVFDTPLAESGI 62
Query: 61 AGIAVGAAMAGLRPVCEFMTFNFSMQAIDHIINSAAKTFYMSAGTVNVPIVFRGPNGAAS 120
G+A+G A+ G RPV E F F + +D I A+ Y + G ++PI R P G
Sbjct: 63 GGLAIGLALQGFRPVPEIQFFGFVYEVMDSICGQMARIRYRTGGRYHMPITIRSPFGGGV 122
Query: 121 GVAAQHSQCFGAWFTQCPGLKVVSPYNSEDAKGLLKAAIRDPDPVVFLENELLYGVQYPM 180
HS Q PGLKVV P DAKGLL +AIRD DPV+FLE+ LY
Sbjct: 123 HTPELHSDSLEGLVAQQPGLKVVIPSTPYDAKGLLISAIRDNDPVIFLEHLKLY---RSF 179
Query: 181 GDEALSKDFVLPIGKAKVEKQ 201
E ++ +PIGKA ++++
Sbjct: 180 RQEVPEGEYTIPIGKADIKRE 200
>pdb|3DUF|B Chain B, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DUF|D Chain D, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DUF|F Chain F, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DUF|H Chain H, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DV0|B Chain B, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DV0|D Chain D, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DV0|F Chain F, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DV0|H Chain H, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DVA|B Chain B, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DVA|D Chain D, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DVA|F Chain F, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DVA|H Chain H, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
Length = 325
Score = 149 bits (375), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 77/201 (38%), Positives = 109/201 (54%), Gaps = 3/201 (1%)
Query: 1 MTVRDALNSALDEEMARDEKVFLLGEEVALYDGAYKVSRGLWKKYGDKRVLDTPITEIGF 60
MT+ A+ AL E+ D V + GE+V + G ++ + GL ++G+ RV DTP+ E G
Sbjct: 4 MTMVQAITDALRIELKNDPNVLIFGEDVGVNGGVFRATEGLQAEFGEDRVFDTPLAESGI 63
Query: 61 AGIAVGAAMAGLRPVCEFMTFNFSMQAIDHIINSAAKTFYMSAGTVNVPIVFRGPNGAAS 120
G+A+G A+ G RPV E F F + +D I A+ Y + G ++PI R P G
Sbjct: 64 GGLAIGLALQGFRPVPEIQFFGFVYEVMDSICGQMARIRYRTGGRYHMPITIRSPFGGGV 123
Query: 121 GVAAQHSQCFGAWFTQCPGLKVVSPYNSEDAKGLLKAAIRDPDPVVFLENELLYGVQYPM 180
HS Q PGLKVV P DAKGLL +AIRD DPV+FLE+ LY
Sbjct: 124 HTPELHSDSLEGLVAQQPGLKVVIPSTPYDAKGLLISAIRDNDPVIFLEHLKLY---RSF 180
Query: 181 GDEALSKDFVLPIGKAKVEKQ 201
E ++ +PIGKA ++++
Sbjct: 181 RQEVPEGEYTIPIGKADIKRE 201
>pdb|2BP7|B Chain B, New Crystal Form Of The Pseudomonas Putida Branched-Chain
Dehydrogenase (E1)
pdb|2BP7|D Chain D, New Crystal Form Of The Pseudomonas Putida Branched-Chain
Dehydrogenase (E1)
pdb|2BP7|F Chain F, New Crystal Form Of The Pseudomonas Putida Branched-Chain
Dehydrogenase (E1)
pdb|2BP7|H Chain H, New Crystal Form Of The Pseudomonas Putida Branched-Chain
Dehydrogenase (E1)
Length = 339
Score = 137 bits (344), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 75/174 (43%), Positives = 97/174 (55%)
Query: 1 MTVRDALNSALDEEMARDEKVFLLGEEVALYDGAYKVSRGLWKKYGDKRVLDTPITEIGF 60
MT+ AL SA+D + RD+ V + G++V + G ++ + GL KYG RV D PI+E G
Sbjct: 6 MTMIQALRSAMDVMLERDDNVVVYGQDVGYFGGVFRCTEGLQTKYGKSRVFDAPISESGI 65
Query: 61 AGIAVGAAMAGLRPVCEFMTFNFSMQAIDHIINSAAKTFYMSAGTVNVPIVFRGPNGAAS 120
G AVG GLRPV E ++ A D I++ A+ Y SAG P+ R P G
Sbjct: 66 VGTAVGMGAYGLRPVVEIQFADYFYPASDQIVSEMARLRYRSAGEFIAPLTLRMPCGGGI 125
Query: 121 GVAAQHSQCFGAWFTQCPGLKVVSPYNSEDAKGLLKAAIRDPDPVVFLENELLY 174
HSQ A FTQ GL+ V P N DAKGLL A+I DPV+FLE + LY
Sbjct: 126 YGGQTHSQSPEAMFTQVCGLRTVMPSNPYDAKGLLIASIECDDPVIFLEPKRLY 179
>pdb|1QS0|B Chain B, Crystal Structure Of Pseudomonas Putida 2-Oxoisovalerate
Dehydrogenase (Branched-Chain Alpha-Keto Acid
Dehydrogenase, E1b)
Length = 338
Score = 134 bits (338), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 73/169 (43%), Positives = 93/169 (55%)
Query: 6 ALNSALDEEMARDEKVFLLGEEVALYDGAYKVSRGLWKKYGDKRVLDTPITEIGFAGIAV 65
AL SA D + RD+ V + G++V + G ++ + GL KYG RV D PI+E G G AV
Sbjct: 10 ALRSAXDVXLERDDNVVVYGQDVGYFGGVFRCTEGLQTKYGKSRVFDAPISESGIVGTAV 69
Query: 66 GAAMAGLRPVCEFMTFNFSMQAIDHIINSAAKTFYMSAGTVNVPIVFRGPNGAASGVAAQ 125
G GLRPV E ++ A D I++ A+ Y SAG P+ R P G
Sbjct: 70 GXGAYGLRPVVEIQFADYFYPASDQIVSEXARLRYRSAGEFIAPLTLRXPCGGGIYGGQT 129
Query: 126 HSQCFGAWFTQCPGLKVVSPYNSEDAKGLLKAAIRDPDPVVFLENELLY 174
HSQ A FTQ GL+ V P N DAKGLL A+I DPV+FLE + LY
Sbjct: 130 HSQSPEAXFTQVCGLRTVXPSNPYDAKGLLIASIECDDPVIFLEPKRLY 178
>pdb|1DTW|B Chain B, Human Branched-Chain Alpha-Keto Acid Dehydrogenase
pdb|1OLS|B Chain B, Roles Of His291-Alpha And His146-Beta' In The Reductive
Acylation Reaction Catalyzed By Human Branched-Chain
Alpha-Ketoacid Dehydrogenase
pdb|1OLU|B Chain B, Roles Of His291-Alpha And His146-Beta' In The Reductive
Acylation Reaction Catalyzed By Human Branched-Chain
Alpha-Ketoacid Dehydrogenase
pdb|1V11|B Chain B, Crosstalk Between Cofactor Binding And The Phosphorylation
Loop Conformation In The Bckd Machine
pdb|1V16|B Chain B, Crosstalk Between Cofactor Binding And The Phosphorylation
Loop Conformation In The Bckd Machine
pdb|1V1M|B Chain B, Crosstalk Between Cofactor Binding And The Phosphorylation
Loop Conformation In The Bckd Machine
pdb|1V1R|B Chain B, Crosstalk Between Cofactor Binding And The Phosphorylation
Loop Conformation In The Bckd Machine
pdb|1U5B|B Chain B, Crystal Structure Of The Human Mitochondrial
Branched-Chain Alpha- Ketoacid Dehydrogenase
pdb|1X7W|B Chain B, Crystal Structure Of The Human Mitochondrial
Branched-Chain Alpha- Ketoacid Dehydrogenase
pdb|1X7X|B Chain B, Crystal Structure Of The Human Mitochondrial
Branched-Chain Alpha- Ketoacid Dehydrogenase
pdb|1X7Y|B Chain B, Crystal Structure Of The Human Mitochondrial
Branched-chain Alpha- Ketoacid Dehydrogenase
pdb|1X7Z|B Chain B, Crystal Structure Of The Human Mitochondrial
Branched-Chain Alpha- Ketoacid Dehydrogenase
pdb|1X80|B Chain B, Crystal Structure Of The Human Mitochondrial
Branched-chain Alpha- Ketoacid Dehydrogenase
pdb|1WCI|B Chain B, Reactivity Modulation Of Human Branched-chain Alpha-
Ketoacid Dehydrogenase By An Internal Molecular Switch
pdb|2BEU|B Chain B, Reactivity Modulation Of Human Branched-Chain Alpha-
Ketoacid Dehydrogenase By An Internal Molecular Switch
pdb|2BEV|B Chain B, Reactivity Modulation Of Human Branched-Chain Alpha-
Ketoacid Dehydrogenase By An Internal Molecular Switch
pdb|2BEW|B Chain B, Reactivity Modulation Of Human Branched-Chain Alpha-
Ketoacid Dehydrogenase By An Internal Molecular Switch
pdb|2BFB|B Chain B, Reactivity Modulation Of Human Branched-Chain Alpha-
Ketoacid Dehydrogenase By An Internal Molecular Switch
pdb|2BFC|B Chain B, Reactivity Modulation Of Human Branched-Chain Alpha-
Ketoacid Dehydrogenase By An Internal Molecular Switch
pdb|2BFD|B Chain B, Reactivity Modulation Of Human Branched-Chain Alpha-
Ketoacid Dehydrogenase By An Internal Molecular Switch
pdb|2BFE|B Chain B, Reactivity Modulation Of Human Branched-Chain Alpha-
Ketoacid Dehydrogenase By An Internal Molecular Switch
pdb|2BFF|B Chain B, Reactivity Modulation Of Human Branched-Chain Alpha-
Ketoacid Dehydrogenase By An Internal Molecular Switch
Length = 342
Score = 124 bits (310), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 70/202 (34%), Positives = 107/202 (52%), Gaps = 5/202 (2%)
Query: 1 MTVRDALNSALDEEMARDEKVFLLGEEVALYDGAYKVSRGLWKKYGDKRVLDTPITEIGF 60
M + ++ SALD +A+D + GE+VA + G ++ + GL KYG RV +TP+ E G
Sbjct: 21 MNLFQSVTSALDNSLAKDPTAVIFGEDVA-FGGVFRCTVGLRDKYGKDRVFNTPLCEQGI 79
Query: 61 AGIAVGAAMAGLRPVCEFMTFNFSMQAIDHIINSAAKTFYMSAGTVNV-PIVFRGPNGAA 119
G +G A+ G + E ++ A D I+N AAK Y S N + R P G
Sbjct: 80 VGFGIGIAVTGATAIAEIQFADYIFPAFDQIVNEAAKYRYRSGDLFNCGSLTIRSPWGCV 139
Query: 120 SGVAAQHSQCFGAWFTQCPGLKVVSPYNSEDAKGLLKAAIRDPDPVVFLENELLYGVQYP 179
A HSQ A+F CPG+KVV P + AKGLL + I D +P +F E ++LY
Sbjct: 140 GHGALYHSQSPEAFFAHCPGIKVVIPRSPFQAKGLLLSCIEDKNPCIFFEPKILYRA--- 196
Query: 180 MGDEALSKDFVLPIGKAKVEKQ 201
+E + + +P+ +A+V ++
Sbjct: 197 AAEEVPIEPYNIPLSQAEVIQE 218
>pdb|2J9F|B Chain B, Human Branched-Chain Alpha-Ketoacid Dehydrogenase-
Decarboxylase E1b
pdb|2J9F|D Chain D, Human Branched-Chain Alpha-Ketoacid Dehydrogenase-
Decarboxylase E1b
Length = 350
Score = 124 bits (310), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 70/202 (34%), Positives = 107/202 (52%), Gaps = 5/202 (2%)
Query: 1 MTVRDALNSALDEEMARDEKVFLLGEEVALYDGAYKVSRGLWKKYGDKRVLDTPITEIGF 60
M + ++ SALD +A+D + GE+VA + G ++ + GL KYG RV +TP+ E G
Sbjct: 21 MNLFQSVTSALDNSLAKDPTAVIFGEDVA-FGGVFRCTVGLRDKYGKDRVFNTPLCEQGI 79
Query: 61 AGIAVGAAMAGLRPVCEFMTFNFSMQAIDHIINSAAKTFYMSAGTVNV-PIVFRGPNGAA 119
G +G A+ G + E ++ A D I+N AAK Y S N + R P G
Sbjct: 80 VGFGIGIAVTGATAIAEIQFADYIFPAFDQIVNEAAKYRYRSGDLFNCGSLTIRSPWGCV 139
Query: 120 SGVAAQHSQCFGAWFTQCPGLKVVSPYNSEDAKGLLKAAIRDPDPVVFLENELLYGVQYP 179
A HSQ A+F CPG+KVV P + AKGLL + I D +P +F E ++LY
Sbjct: 140 GHGALYHSQSPEAFFAHCPGIKVVIPRSPFQAKGLLLSCIEDKNPCIFFEPKILYRA--- 196
Query: 180 MGDEALSKDFVLPIGKAKVEKQ 201
+E + + +P+ +A+V ++
Sbjct: 197 AAEEVPIEPYNIPLSQAEVIQE 218
>pdb|1OLX|B Chain B, Roles Of His291-alpha And His146-beta' In The Reductive
Acylation Reaction Catalyzed By Human Branched-chain
Alpha-ketoacid Dehydrogenase
Length = 342
Score = 120 bits (300), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 69/202 (34%), Positives = 106/202 (52%), Gaps = 5/202 (2%)
Query: 1 MTVRDALNSALDEEMARDEKVFLLGEEVALYDGAYKVSRGLWKKYGDKRVLDTPITEIGF 60
M + ++ SALD +A+D + GE+VA + G ++ + GL KYG RV +TP+ E G
Sbjct: 21 MNLFQSVTSALDNSLAKDPTAVIFGEDVA-FGGVFRCTVGLRDKYGKDRVFNTPLCEQGI 79
Query: 61 AGIAVGAAMAGLRPVCEFMTFNFSMQAIDHIINSAAKTFYMSAGTVNV-PIVFRGPNGAA 119
G +G A+ G + E ++ A D I+N AAK Y S N + R P G
Sbjct: 80 VGFGIGIAVTGATAIAEIQFADYIFPAFDQIVNEAAKYRYRSGDLFNCGSLTIRSPWGCV 139
Query: 120 SGVAAQHSQCFGAWFTQCPGLKVVSPYNSEDAKGLLKAAIRDPDPVVFLENELLYGVQYP 179
A SQ A+F CPG+KVV P + AKGLL + I D +P +F E ++LY
Sbjct: 140 GHGALYASQSPEAFFAHCPGIKVVIPRSPFQAKGLLLSCIEDKNPCIFFEPKILYRA--- 196
Query: 180 MGDEALSKDFVLPIGKAKVEKQ 201
+E + + +P+ +A+V ++
Sbjct: 197 AAEEVPIEPYNIPLSQAEVIQE 218
>pdb|2O1X|A Chain A, 1-deoxy-d-xylulose 5-phosphate Synthase (dxs) From
Deinococcus Radiodurans
pdb|2O1X|B Chain B, 1-deoxy-d-xylulose 5-phosphate Synthase (dxs) From
Deinococcus Radiodurans
pdb|2O1X|C Chain C, 1-deoxy-d-xylulose 5-phosphate Synthase (dxs) From
Deinococcus Radiodurans
pdb|2O1X|D Chain D, 1-deoxy-d-xylulose 5-phosphate Synthase (dxs) From
Deinococcus Radiodurans
Length = 629
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 45/180 (25%), Positives = 73/180 (40%), Gaps = 23/180 (12%)
Query: 6 ALNSALDEEMARDEKVFLLGEEVALYDGAYKVSRGLWKKYGDKRVLDTPITEIGFAGIAV 65
A A+ E D + F++ + G + SR +Y LD I E A
Sbjct: 327 AFGEAVTEWAKTDPRTFVVTPAMREGSGLVEFSRVHPHRY-----LDVGIAEEVAVTTAA 381
Query: 66 GAAMAGLRPVCEFMTFNFSMQAIDHIINSAAKTFYMSAGTVNVPIVFRGPNGAASGVAAQ 125
G A+ G+RPV + F +A D +++ A V I G GA A
Sbjct: 382 GMALQGMRPVVAIYS-TFLQRAYDQVLHDVAIEHL----NVTFCIDRAGIVGAD---GAT 433
Query: 126 HSQCFGAWFTQC-PGLKVVSPYNSEDAKGLLKAAIRDPDPVVFLENELLYGVQYPMGDEA 184
H+ F F + PG+++ P ++ + +G+LK A P + ++YP G+ A
Sbjct: 434 HNGVFDLSFLRSIPGVRIGLPKDAAELRGMLKYAQTHDGP---------FAIRYPRGNTA 484
>pdb|2Y7O|A Chain A, Structure Of N-Terminal Domain Of Candida Albicans Als9-2
- G299w Mutant
Length = 312
Score = 30.8 bits (68), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 5/56 (8%)
Query: 77 EFMTFNFSMQAIDHIINSAAKTFYMSAGTVNVPIVFRGPNGAASGVAAQHSQCFGA 132
EF TF ++ +NS + ++ +GTV +PI F G S V S+CF A
Sbjct: 87 EFTTF----SSLSCTVNSVSVSYARVSGTVKLPITFN-VGGTGSSVDLADSKCFTA 137
>pdb|2Y7L|A Chain A, Structure Of N-Terminal Domain Of Candida Albicans Als9-2
In Complex With Human Fibrinogen Gamma Peptide
Length = 312
Score = 30.8 bits (68), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 5/56 (8%)
Query: 77 EFMTFNFSMQAIDHIINSAAKTFYMSAGTVNVPIVFRGPNGAASGVAAQHSQCFGA 132
EF TF ++ +NS + ++ +GTV +PI F G S V S+CF A
Sbjct: 87 EFTTF----SSLSCTVNSVSVSYARVSGTVKLPITFN-VGGTGSSVDLADSKCFTA 137
>pdb|2YLH|A Chain A, Structure Of N-Terminal Domain Of Candida Albicans Als9-2
G299w Mutant
Length = 312
Score = 30.8 bits (68), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 5/56 (8%)
Query: 77 EFMTFNFSMQAIDHIINSAAKTFYMSAGTVNVPIVFRGPNGAASGVAAQHSQCFGA 132
EF TF ++ +NS + ++ +GTV +PI F G S V S+CF A
Sbjct: 87 EFTTF----SSLSCTVNSVSVSYARVSGTVKLPITFN-VGGTGSSVDLADSKCFTA 137
>pdb|2Y7M|A Chain A, Structure Of N-Terminal Domain Of Candida Albicans Als9-2
(Pt Derivative)
pdb|2Y7N|A Chain A, Structure Of N-Terminal Domain Of Candida Albicans Als9-2
- Apo Form
Length = 312
Score = 30.8 bits (68), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 5/56 (8%)
Query: 77 EFMTFNFSMQAIDHIINSAAKTFYMSAGTVNVPIVFRGPNGAASGVAAQHSQCFGA 132
EF TF ++ +NS + ++ +GTV +PI F G S V S+CF A
Sbjct: 87 EFTTF----SSLSCTVNSVSVSYARVSGTVKLPITFN-VGGTGSSVDLADSKCFTA 137
>pdb|1MR5|A Chain A, Orthorhombic Form Of Trypanosoma Cruzi Trans-Sialidase
pdb|1MS0|A Chain A, Monoclinic Form Of Trypanosoma Cruzi Trans-Sialidase, In
Complex With 3-Deoxy-2,3-Dehydro-N-Acetylneuraminic Acid
(Dana)and Lactose
pdb|1MS0|B Chain B, Monoclinic Form Of Trypanosoma Cruzi Trans-Sialidase, In
Complex With 3-Deoxy-2,3-Dehydro-N-Acetylneuraminic Acid
(Dana)and Lactose
pdb|1MS1|A Chain A, Monoclinic Form Of Trypanosoma Cruzi Trans-sialidase, In
Complex With 3-deoxy-2,3-dehydro-n-acetylneuraminic Acid
(dana)
pdb|1MS1|B Chain B, Monoclinic Form Of Trypanosoma Cruzi Trans-sialidase, In
Complex With 3-deoxy-2,3-dehydro-n-acetylneuraminic Acid
(dana)
pdb|1MS3|A Chain A, Monoclinic Form Of Trypanosoma Cruzi Trans-Sialidase
pdb|1MS3|B Chain B, Monoclinic Form Of Trypanosoma Cruzi Trans-Sialidase
pdb|1MS4|A Chain A, Triclinic Form Of Trypanosoma Cruzi Trans-Sialidase
pdb|1MS4|B Chain B, Triclinic Form Of Trypanosoma Cruzi Trans-Sialidase
pdb|1MS8|A Chain A, Triclinic Form Of Trypanosoma Cruzi Trans-Sialidase, In
Complex With 3-Deoxy-2,3-Dehydro-N-Acetylneuraminic Acid
(Dana)
pdb|1MS8|B Chain B, Triclinic Form Of Trypanosoma Cruzi Trans-Sialidase, In
Complex With 3-Deoxy-2,3-Dehydro-N-Acetylneuraminic Acid
(Dana)
pdb|1MS9|A Chain A, Triclinic Form Of Trypanosoma Cruzi Trans-Sialidase, In
Complex With Lactose
pdb|1MS9|B Chain B, Triclinic Form Of Trypanosoma Cruzi Trans-Sialidase, In
Complex With Lactose
pdb|2AH2|A Chain A, Trypanosoma Cruzi Trans-Sialidase In Complex With
2,3-Difluorosialic Acid (Covalent Intermediate)
pdb|3B69|A Chain A, T Cruzi Trans-Sialidase Complex With Benzoylated Nana
Derivative
pdb|3OPZ|A Chain A, Crystal Structure Of Trans-Sialidase In Complex With The
Fab Fragment Of A Neutralizing Monoclonal Igg Antibody
pdb|3OPZ|B Chain B, Crystal Structure Of Trans-Sialidase In Complex With The
Fab Fragment Of A Neutralizing Monoclonal Igg Antibody
pdb|3OPZ|C Chain C, Crystal Structure Of Trans-Sialidase In Complex With The
Fab Fragment Of A Neutralizing Monoclonal Igg Antibody
Length = 648
Score = 28.5 bits (62), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 39/99 (39%), Gaps = 6/99 (6%)
Query: 18 DEKVFLLGEEVALYDGAYKVSRGLWKKYGDKRVLDT--PITEI--GFAGIAVGAAMAGLR 73
D V + G ++ + G+Y SR W +GD R D + E+ AG + A++
Sbjct: 110 DPTVIVKGNKLYVLVGSYNSSRSYWTSHGDARDWDILLAVGEVTKSTAGGKITASIKWGS 169
Query: 74 PVC--EFMTFNFSMQAIDHIINSAAKTFYMSAGTVNVPI 110
PV EF + + A S G + P+
Sbjct: 170 PVSLKEFFPAEMEGMHTNQFLGGAGVAIVASNGNLVYPV 208
>pdb|1S0I|A Chain A, Trypanosoma Cruzi Trans-Sialidase In Complex With Sialyl-
Lactose (Michaelis Complex)
pdb|1S0J|A Chain A, Trypanosoma Cruzi Trans-Sialidase In Complex With Munana
(Michaelis Complex)
Length = 648
Score = 28.5 bits (62), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 39/99 (39%), Gaps = 6/99 (6%)
Query: 18 DEKVFLLGEEVALYDGAYKVSRGLWKKYGDKRVLDT--PITEI--GFAGIAVGAAMAGLR 73
D V + G ++ + G+Y SR W +GD R D + E+ AG + A++
Sbjct: 110 DPTVIVKGNKLYVLVGSYNSSRSYWTSHGDARDWDILLAVGEVTKSTAGGKITASIKWGS 169
Query: 74 PVC--EFMTFNFSMQAIDHIINSAAKTFYMSAGTVNVPI 110
PV EF + + A S G + P+
Sbjct: 170 PVSLKEFFPAEMEGMHTNQFLGGAGVAIVASNGNLVYPV 208
>pdb|3PJQ|A Chain A, Trypanosoma Cruzi Trans-Sialidase-Like Inactive Isoform
(Including The Natural Mutation Tyr342his) In Complex
With Lactose
Length = 648
Score = 28.5 bits (62), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 39/99 (39%), Gaps = 6/99 (6%)
Query: 18 DEKVFLLGEEVALYDGAYKVSRGLWKKYGDKRVLDT--PITEI--GFAGIAVGAAMAGLR 73
D V + G ++ + G+Y SR W +GD R D + E+ AG + A++
Sbjct: 110 DPTVIVKGNKLYVLVGSYNSSRSYWTSHGDARDWDILLAVGEVTKSTAGGKITASIKWGS 169
Query: 74 PVC--EFMTFNFSMQAIDHIINSAAKTFYMSAGTVNVPI 110
PV EF + + A S G + P+
Sbjct: 170 PVSLKEFFPAEMEGMHTNQFLGGAGVAIVASNGNLVYPV 208
>pdb|1MS5|A Chain A, Triclinic Form Of Trypanosoma Cruzi Trans-Sialidase,
Soaked With N-Acetylneuraminyl-A-2,3-Thio-Galactoside
(Na-S-Gal)
pdb|1MS5|B Chain B, Triclinic Form Of Trypanosoma Cruzi Trans-Sialidase,
Soaked With N-Acetylneuraminyl-A-2,3-Thio-Galactoside
(Na-S-Gal)
Length = 648
Score = 28.5 bits (62), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 39/99 (39%), Gaps = 6/99 (6%)
Query: 18 DEKVFLLGEEVALYDGAYKVSRGLWKKYGDKRVLDT--PITEI--GFAGIAVGAAMAGLR 73
D V + G ++ + G+Y SR W +GD R D + E+ AG + A++
Sbjct: 110 DPTVIVKGNKLYVLVGSYNSSRSYWTSHGDARDWDILLAVGEVTKSTAGGKITASIKWGS 169
Query: 74 PVC--EFMTFNFSMQAIDHIINSAAKTFYMSAGTVNVPI 110
PV EF + + A S G + P+
Sbjct: 170 PVSLKEFFPAEMEGMHTNQFLGGAGVAIVASNGNLVYPV 208
>pdb|1FOH|A Chain A, Phenol Hydroxylase From Trichosporon Cutaneum
pdb|1FOH|B Chain B, Phenol Hydroxylase From Trichosporon Cutaneum
pdb|1FOH|C Chain C, Phenol Hydroxylase From Trichosporon Cutaneum
pdb|1FOH|D Chain D, Phenol Hydroxylase From Trichosporon Cutaneum
Length = 664
Score = 28.1 bits (61), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 17/34 (50%)
Query: 36 KVSRGLWKKYGDKRVLDTPITEIGFAGIAVGAAM 69
+ S GLW +GD+ V D I FAG A A
Sbjct: 491 RHSEGLWMHFGDRLVTDGRFRIIVFAGKATDATQ 524
>pdb|1PN0|A Chain A, Phenol Hydroxylase From Trichosporon Cutaneum
pdb|1PN0|B Chain B, Phenol Hydroxylase From Trichosporon Cutaneum
pdb|1PN0|C Chain C, Phenol Hydroxylase From Trichosporon Cutaneum
pdb|1PN0|D Chain D, Phenol Hydroxylase From Trichosporon Cutaneum
Length = 665
Score = 28.1 bits (61), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 17/34 (50%)
Query: 36 KVSRGLWKKYGDKRVLDTPITEIGFAGIAVGAAM 69
+ S GLW +GD+ V D I FAG A A
Sbjct: 492 RHSEGLWMHFGDRLVTDGRFRIIVFAGKATDATQ 525
>pdb|2W61|A Chain A, Saccharomyces Cerevisiae Gas2p Apostructure (E176q Mutant)
Length = 555
Score = 27.7 bits (60), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 25/50 (50%)
Query: 139 GLKVVSPYNSEDAKGLLKAAIRDPDPVVFLENELLYGVQYPMGDEALSKD 188
G +V + + + A +KAAIRD + N V Y D+A+++D
Sbjct: 174 GNQVTNDHTNTFASPFVKAAIRDAKEYISHSNHRKIPVGYSTNDDAMTRD 223
>pdb|2W62|A Chain A, Saccharomyces Cerevisiae Gas2p In Complex With
Laminaripentaose
pdb|2W63|A Chain A, Saccharomyces Cerevisiae Gas2p In Complex With
Laminaritriose And Laminaritetraose
Length = 555
Score = 27.7 bits (60), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 25/50 (50%)
Query: 139 GLKVVSPYNSEDAKGLLKAAIRDPDPVVFLENELLYGVQYPMGDEALSKD 188
G +V + + + A +KAAIRD + N V Y D+A+++D
Sbjct: 174 GNEVTNDHTNTFASPFVKAAIRDAKEYISHSNHRKIPVGYSTNDDAMTRD 223
>pdb|1UW7|A Chain A, Nsp9 Protein From Sars-Coronavirus
Length = 143
Score = 26.6 bits (57), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 3/67 (4%)
Query: 96 AKTFYMSAGTVNVPIVFRGPNGAASGVAAQHSQC-FGAWFTQCPGLKVVSPYNSEDAKGL 154
+ + Y AG + V +F+GPN S VA + C G T C ++ YN+
Sbjct: 13 STSLYKKAGFLEV--LFQGPNNELSPVALRQMSCAAGTTQTACTDDNALAYYNNSKGGRF 70
Query: 155 LKAAIRD 161
+ A + D
Sbjct: 71 VLALLSD 77
>pdb|2K4Q|A Chain A, The Solution Structure Of Gpv, The Major Tail Protein From
Bacteriophage Lambda
Length = 156
Score = 26.6 bits (57), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 21/34 (61%)
Query: 174 YGVQYPMGDEALSKDFVLPIGKAKVEKQVIMKTL 207
Y +++P G + + +V IGKA K+VI +T+
Sbjct: 111 YKIRFPNGTVDVFRGWVSSIGKAVTAKEVITRTV 144
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,080,867
Number of Sequences: 62578
Number of extensions: 245786
Number of successful extensions: 610
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 578
Number of HSP's gapped (non-prelim): 30
length of query: 207
length of database: 14,973,337
effective HSP length: 94
effective length of query: 113
effective length of database: 9,091,005
effective search space: 1027283565
effective search space used: 1027283565
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)